Query 011674
Match_columns 480
No_of_seqs 286 out of 3672
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 100.0 7.9E-43 1.7E-47 324.4 3.6 392 3-412 79-481 (873)
2 PLN00113 leucine-rich repeat r 100.0 5.8E-38 1.3E-42 339.6 23.1 366 1-382 163-559 (968)
3 PLN00113 leucine-rich repeat r 100.0 8E-38 1.7E-42 338.6 22.5 366 1-382 139-535 (968)
4 KOG4194 Membrane glycoprotein 100.0 4.4E-37 9.5E-42 286.3 5.1 361 5-382 55-428 (873)
5 KOG0444 Cytoskeletal regulator 100.0 2.8E-32 6.1E-37 256.4 -5.1 358 2-382 7-374 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 1.3E-30 2.8E-35 245.3 -3.3 370 25-414 5-383 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2.9E-30 6.4E-35 230.8 -9.7 358 2-383 114-541 (565)
8 KOG0618 Serine/threonine phosp 99.9 1.9E-28 4E-33 240.5 -2.8 249 116-382 239-488 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 2E-28 4.3E-33 219.2 -9.5 350 22-384 86-519 (565)
10 KOG0618 Serine/threonine phosp 99.9 3.9E-25 8.4E-30 217.4 -5.2 355 3-384 46-466 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.4E-21 5.3E-26 210.7 22.1 336 19-383 550-906 (1153)
12 KOG4237 Extracellular matrix p 99.9 1.4E-24 3.1E-29 194.2 -4.3 268 4-274 69-358 (498)
13 PLN03210 Resistant to P. syrin 99.9 5.1E-21 1.1E-25 208.2 19.6 328 1-357 557-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 2.2E-23 4.7E-28 186.7 -3.0 301 51-397 67-373 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-20 2.7E-25 191.1 14.0 262 51-364 201-463 (788)
16 cd00116 LRR_RI Leucine-rich re 99.8 1.7E-19 3.7E-24 171.0 18.0 281 6-309 2-318 (319)
17 PRK15387 E3 ubiquitin-protein 99.8 2.2E-20 4.8E-25 189.3 12.4 264 27-342 201-465 (788)
18 cd00116 LRR_RI Leucine-rich re 99.8 5.7E-18 1.2E-22 160.6 18.1 277 31-333 2-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 2.2E-17 4.8E-22 168.6 13.3 158 100-275 200-359 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.6E-17 3.5E-22 169.6 11.1 224 76-336 200-429 (754)
21 KOG1909 Ran GTPase-activating 99.5 1.7E-14 3.6E-19 128.4 5.2 207 182-396 86-325 (382)
22 KOG1909 Ran GTPase-activating 99.5 1.2E-13 2.7E-18 122.9 10.0 136 166-310 157-310 (382)
23 KOG0617 Ras suppressor protein 99.4 8.7E-16 1.9E-20 122.7 -6.8 161 23-205 29-190 (264)
24 KOG3207 Beta-tubulin folding c 99.4 5.3E-14 1.1E-18 128.7 1.4 212 139-361 119-341 (505)
25 KOG4341 F-box protein containi 99.4 4.7E-13 1E-17 121.9 4.7 302 99-411 138-467 (483)
26 KOG3207 Beta-tubulin folding c 99.4 3.6E-13 7.9E-18 123.3 3.8 209 164-384 119-340 (505)
27 KOG0617 Ras suppressor protein 99.4 1.3E-14 2.9E-19 116.0 -4.9 159 116-280 31-191 (264)
28 KOG2120 SCF ubiquitin ligase, 99.2 4.2E-12 9.1E-17 110.8 3.0 203 189-404 186-395 (419)
29 KOG4341 F-box protein containi 99.2 1.1E-11 2.4E-16 113.1 3.0 297 28-354 139-460 (483)
30 PF14580 LRR_9: Leucine-rich r 99.2 3.8E-11 8.2E-16 100.5 5.9 107 142-251 20-126 (175)
31 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.9E-16 101.9 3.8 36 51-88 19-55 (175)
32 KOG2120 SCF ubiquitin ligase, 99.1 4.4E-11 9.6E-16 104.5 2.8 189 27-216 185-390 (419)
33 KOG1259 Nischarin, modulator o 99.1 3E-11 6.5E-16 105.7 1.6 133 185-337 281-414 (490)
34 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.8E-16 107.1 0.1 129 238-384 284-413 (490)
35 KOG0532 Leucine-rich repeat (L 99.1 1.5E-11 3.2E-16 116.5 -1.1 209 125-357 57-271 (722)
36 COG5238 RNA1 Ran GTPase-activa 99.1 4.1E-10 8.8E-15 97.3 7.2 234 46-311 25-285 (388)
37 COG4886 Leucine-rich repeat (L 99.0 3.8E-10 8.3E-15 110.2 6.2 195 31-233 97-297 (394)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 120.5 3.2 174 25-202 543-731 (889)
39 COG4886 Leucine-rich repeat (L 99.0 2E-09 4.3E-14 105.2 8.9 175 166-361 116-292 (394)
40 COG5238 RNA1 Ran GTPase-activa 98.9 2.5E-09 5.4E-14 92.5 7.3 221 23-251 26-285 (388)
41 KOG0532 Leucine-rich repeat (L 98.9 2.8E-11 6.1E-16 114.6 -5.7 184 6-198 79-270 (722)
42 KOG0531 Protein phosphatase 1, 98.9 2E-10 4.3E-15 112.4 -0.7 103 97-202 70-176 (414)
43 PLN03150 hypothetical protein; 98.8 5E-09 1.1E-13 107.2 7.4 103 28-130 419-527 (623)
44 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.8E-14 73.8 3.1 59 299-357 2-60 (61)
45 KOG4658 Apoptotic ATPase [Sign 98.8 1.8E-09 3.8E-14 113.0 3.6 129 27-177 523-653 (889)
46 PLN03150 hypothetical protein; 98.8 1E-08 2.2E-13 105.0 8.4 109 264-384 420-529 (623)
47 KOG0531 Protein phosphatase 1, 98.8 3E-10 6.6E-15 111.0 -2.7 244 116-384 70-319 (414)
48 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.7E-14 73.8 2.2 60 51-110 1-60 (61)
49 KOG2982 Uncharacterized conser 98.7 4.5E-09 9.8E-14 92.1 2.6 204 53-275 47-262 (418)
50 KOG2982 Uncharacterized conser 98.7 1.4E-08 3E-13 89.2 3.3 187 164-361 69-264 (418)
51 KOG1859 Leucine-rich repeat pr 98.6 5.2E-10 1.1E-14 109.1 -7.6 81 117-200 186-266 (1096)
52 KOG3665 ZYG-1-like serine/thre 98.6 8.3E-08 1.8E-12 98.1 6.8 196 25-222 58-284 (699)
53 KOG1859 Leucine-rich repeat pr 98.6 2.2E-09 4.8E-14 104.8 -4.5 131 239-387 165-296 (1096)
54 KOG3665 ZYG-1-like serine/thre 98.5 2.9E-07 6.3E-12 94.2 6.9 127 3-131 123-263 (699)
55 KOG1947 Leucine rich repeat pr 98.3 5.4E-07 1.2E-11 90.7 5.5 133 139-271 186-330 (482)
56 KOG1644 U2-associated snRNP A' 98.1 5.5E-06 1.2E-10 69.1 5.5 100 99-198 42-150 (233)
57 KOG1644 U2-associated snRNP A' 98.1 2.7E-06 5.9E-11 70.9 3.6 106 165-271 41-149 (233)
58 KOG1947 Leucine rich repeat pr 98.1 7E-06 1.5E-10 82.6 7.0 112 164-275 186-308 (482)
59 PF12799 LRR_4: Leucine Rich r 98.0 8E-06 1.7E-10 51.3 3.8 36 52-88 2-37 (44)
60 KOG4579 Leucine-rich repeat (L 98.0 7.5E-07 1.6E-11 69.3 -1.3 43 117-159 99-141 (177)
61 KOG4579 Leucine-rich repeat (L 97.9 3.3E-06 7.3E-11 65.8 0.2 107 30-137 30-142 (177)
62 PRK15386 type III secretion pr 97.8 7.3E-05 1.6E-09 70.9 8.4 88 25-125 50-139 (426)
63 PRK15386 type III secretion pr 97.8 5.4E-05 1.2E-09 71.7 7.5 52 98-151 51-104 (426)
64 PF12799 LRR_4: Leucine Rich r 97.8 3.3E-05 7.3E-10 48.4 3.8 38 119-156 2-39 (44)
65 KOG4308 LRR-containing protein 97.6 6.1E-06 1.3E-10 81.0 -2.2 234 140-382 203-472 (478)
66 PF13306 LRR_5: Leucine rich r 97.6 9.3E-05 2E-09 59.6 4.4 59 293-354 53-111 (129)
67 KOG4308 LRR-containing protein 97.6 6.1E-06 1.3E-10 81.0 -3.1 298 77-382 89-444 (478)
68 KOG2739 Leucine-rich acidic nu 97.5 3.5E-05 7.6E-10 67.2 0.9 106 236-355 41-152 (260)
69 KOG2123 Uncharacterized conser 97.5 1.1E-05 2.4E-10 70.6 -2.4 79 27-109 19-98 (388)
70 KOG2739 Leucine-rich acidic nu 97.3 5.6E-05 1.2E-09 66.0 -0.1 79 51-131 43-129 (260)
71 PF13306 LRR_5: Leucine rich r 97.1 0.0011 2.4E-08 53.2 5.9 108 256-380 6-113 (129)
72 KOG2123 Uncharacterized conser 96.9 0.00012 2.6E-09 64.4 -2.0 100 141-244 19-123 (388)
73 KOG3864 Uncharacterized conser 96.6 0.00048 1E-08 57.8 -0.3 103 299-401 102-209 (221)
74 KOG3864 Uncharacterized conser 96.1 0.0029 6.3E-08 53.3 1.5 81 190-271 103-185 (221)
75 smart00367 LRR_CC Leucine-rich 95.4 0.02 4.4E-07 31.1 2.7 25 1-25 1-25 (26)
76 PF00560 LRR_1: Leucine Rich R 94.8 0.016 3.4E-07 30.1 1.1 20 119-138 1-20 (22)
77 PF13504 LRR_7: Leucine rich r 93.7 0.041 8.9E-07 26.4 1.3 14 119-132 2-15 (17)
78 smart00367 LRR_CC Leucine-rich 93.7 0.096 2.1E-06 28.4 2.9 25 369-393 1-25 (26)
79 PF00560 LRR_1: Leucine Rich R 93.1 0.042 9E-07 28.4 0.7 12 77-88 2-13 (22)
80 PF13516 LRR_6: Leucine Rich r 92.6 0.077 1.7E-06 28.1 1.4 12 29-40 4-15 (24)
81 PF13516 LRR_6: Leucine Rich r 91.7 0.094 2E-06 27.7 1.1 21 188-208 2-22 (24)
82 smart00370 LRR Leucine-rich re 90.6 0.19 4.1E-06 27.1 1.6 20 118-137 2-21 (26)
83 smart00369 LRR_TYP Leucine-ric 90.6 0.19 4.1E-06 27.1 1.6 20 118-137 2-21 (26)
84 smart00370 LRR Leucine-rich re 89.9 0.33 7.2E-06 26.1 2.2 21 75-95 2-22 (26)
85 smart00369 LRR_TYP Leucine-ric 89.9 0.33 7.2E-06 26.1 2.2 21 75-95 2-22 (26)
86 KOG4242 Predicted myosin-I-bin 88.8 1.2 2.6E-05 42.9 6.4 72 324-396 415-493 (553)
87 KOG4242 Predicted myosin-I-bin 86.9 6.9 0.00015 38.1 10.1 174 26-204 164-370 (553)
88 smart00368 LRR_RI Leucine rich 85.6 1.1 2.3E-05 24.7 2.6 21 2-23 2-22 (28)
89 TIGR00864 PCC polycystin catio 84.5 0.48 1E-05 55.5 1.6 46 352-397 1-46 (2740)
90 smart00368 LRR_RI Leucine rich 83.6 1.5 3.2E-05 24.2 2.6 23 188-210 2-24 (28)
91 KOG0473 Leucine-rich repeat pr 80.4 0.032 7E-07 48.2 -7.2 88 258-360 38-125 (326)
92 smart00365 LRR_SD22 Leucine-ri 75.1 3 6.5E-05 22.5 2.0 11 101-111 4-14 (26)
93 smart00364 LRR_BAC Leucine-ric 74.4 2 4.3E-05 23.2 1.1 18 118-135 2-19 (26)
94 KOG0473 Leucine-rich repeat pr 74.3 0.049 1.1E-06 47.2 -7.8 84 23-109 38-121 (326)
95 KOG3763 mRNA export factor TAP 71.2 3.6 7.8E-05 40.7 2.9 35 164-198 216-254 (585)
96 KOG3763 mRNA export factor TAP 68.5 5.8 0.00012 39.4 3.6 81 320-401 216-306 (585)
97 PF07723 LRR_2: Leucine Rich R 26.9 52 0.0011 17.7 1.5 20 372-391 2-21 (26)
98 PRK09718 hypothetical protein; 22.9 1E+02 0.0022 30.6 3.7 33 325-361 211-243 (512)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-43 Score=324.43 Aligned_cols=392 Identities=20% Similarity=0.257 Sum_probs=347.3
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEc
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 82 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 82 (480)
.-+.|+|++| .+.+..+..|.++++|+.+++..|.++. +|...+...+|+.|+|.+|.|..+-...++-++.|+.|||
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3467999999 7898999999999999999999999987 4555556777999999999999888889999999999999
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCCh
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINE 156 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~ 156 (480)
+.|.|+.+....|..-.++++|+|++|.++.+. .+.+|-.|.+++|.++.+|...+ .+++|+.|+|..|.+..+
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 999999876667777789999999999999765 67799999999999999999988 599999999999988644
Q ss_pred hHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHh
Q 011674 157 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 234 (480)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 234 (480)
.+..|.++++|+.|.+..|.+..+ ..|..+.++++|+++.|++....-.++..+ .+|+.|++++|.|..+.+..+
T Consensus 237 -e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W- 313 (873)
T KOG4194|consen 237 -EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW- 313 (873)
T ss_pred -hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-
Confidence 346788999999999999999988 688899999999999999998777777777 999999999999998888776
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc
Q 011674 235 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 314 (480)
Q Consensus 235 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 314 (480)
+.+++|++|+|+.|+++...+..|..+..|++|+++.|.+...... +|.++.+|++|+|++|.+...+
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~------------af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG------------AFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh------------HHHHhhhhhhhcCcCCeEEEEE
Confidence 6799999999999999999999999999999999999999887666 8999999999999999887654
Q ss_pred c---ccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHH
Q 011674 315 L---FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 391 (480)
Q Consensus 315 ~---~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 391 (480)
. ..|.++++|++|+|.+|++..+...+|.++++|++|+|.+|.|..+-+.+|..+ .|++|.+..-.++|||.+.|+
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHH
Confidence 3 347789999999999999999988999999999999999999999999999988 999999999999999999999
Q ss_pred HHhCCceeeeeeeccccCCCC
Q 011674 392 CKMHPRIEVWHELSVICPSDQ 412 (480)
Q Consensus 392 ~~~~~~l~~~~~~~~~~~~~~ 412 (480)
.+|.-+..+.......|..+.
T Consensus 461 ~qWl~~~~lq~sv~a~CayPe 481 (873)
T KOG4194|consen 461 AQWLYRRKLQSSVIAKCAYPE 481 (873)
T ss_pred HHHHHhcccccceeeeccCCc
Confidence 988876666655555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-38 Score=339.64 Aligned_cols=366 Identities=23% Similarity=0.233 Sum_probs=231.0
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|+|++| .+....+..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..++++++|++|
T Consensus 163 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 468999999998 5666667788899999999999999888888888999999999999999888888888999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCCC-----CCCCCCCCEEEcCCCccc-chhccCCCCCCccEEEccCCCCC
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFI 154 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~ 154 (480)
++++|.+.+..|..+.++++|++|++++|.+.+ +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 999998888888888888999999998888763 235778888888888776 46666667788888888888776
Q ss_pred ChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHH
Q 011674 155 NEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 232 (480)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 232 (480)
+..+. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+..+... .+|+.|++++|.+....+..
T Consensus 322 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 322 GKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CcCCh-hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHH
Confidence 54332 234677777777777776543 345566666667666666654444444433 44444444444444333333
Q ss_pred Hh-----------------------cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhh
Q 011674 233 LA-----------------------GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 289 (480)
Q Consensus 233 ~~-----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 289 (480)
+. ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~--------- 470 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--------- 470 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---------
Confidence 21 2344444444444444444333334444444444444444433332
Q ss_pred cHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC
Q 011674 290 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 369 (480)
Q Consensus 290 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 369 (480)
....++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+
T Consensus 471 ----~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 471 ----SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ----ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 1122344444444444444444444444455555555554444444444445555555555555544444444444
Q ss_pred CCCcEEEcCCCcc
Q 011674 370 RSLKLLDLHGGWL 382 (480)
Q Consensus 370 ~~L~~l~l~~n~~ 382 (480)
++|+.|++++|.+
T Consensus 547 ~~L~~L~Ls~N~l 559 (968)
T PLN00113 547 PVLSQLDLSQNQL 559 (968)
T ss_pred ccCCEEECCCCcc
Confidence 4555555555543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8e-38 Score=338.59 Aligned_cols=366 Identities=20% Similarity=0.206 Sum_probs=308.0
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|+|++| .++...+..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..+.++++|++|
T Consensus 139 l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 478999999999 5776677889999999999999999998889999999999999999999999899999999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCCC-----CCCCCCCCEEEcCCCccc-chhccCCCCCCccEEEccCCCCC
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFI 154 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~ 154 (480)
++++|.+.+..|..+.++++|++|++++|.+.+ +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 999999999899999999999999999998874 447899999999999987 57778889999999999999987
Q ss_pred ChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHH
Q 011674 155 NEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 232 (480)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 232 (480)
+..+. .+.++++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+..+..+ ++|+.|++++|.+....+..
T Consensus 298 ~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 298 GEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred cCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChh
Confidence 54442 245789999999999998765 567889999999999999988788888887 89999999999998776666
Q ss_pred HhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccc
Q 011674 233 LAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 312 (480)
Q Consensus 233 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 312 (480)
+ ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+
T Consensus 376 ~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~------------~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 376 L-CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------------EFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred H-hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh------------hHhcCCCCCEEECcCCcccC
Confidence 5 3578899999999988887788888888888888888888776655 45555555555555555544
Q ss_pred ccccccc-----------------------ccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC
Q 011674 313 ATLFPLS-----------------------TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 369 (480)
Q Consensus 313 ~~~~~~~-----------------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 369 (480)
..+..+. ..++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 3333222 23567777777777777767778888999999999999988888888888
Q ss_pred CCCcEEEcCCCcc
Q 011674 370 RSLKLLDLHGGWL 382 (480)
Q Consensus 370 ~~L~~l~l~~n~~ 382 (480)
++|+.|++++|.+
T Consensus 523 ~~L~~L~Ls~N~l 535 (968)
T PLN00113 523 KKLVSLDLSHNQL 535 (968)
T ss_pred cCCCEEECCCCcc
Confidence 9999999999986
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=286.29 Aligned_cols=361 Identities=22% Similarity=0.269 Sum_probs=313.3
Q ss_pred cEEecCCCCCCChhhHHhhhCC--CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEc
Q 011674 5 KELDLSRCVKVTDAGMKHLLSI--STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 82 (480)
Q Consensus 5 ~~L~L~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 82 (480)
+.|+.++. ++.......+..+ +.-+.|++++|.+..+.+..|.++++|+++++..|.++.+ |..-.-..+|+.|+|
T Consensus 55 ~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCcc-ccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-ccccccccceeEEee
Confidence 45666666 4544333444433 4556799999999999999999999999999999988765 433344457999999
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCCh
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINE 156 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~ 156 (480)
.+|.|+.+....+..++.|+.|||+.|.++.++ .-.++++|++++|.|+.+..+.+ .+.+|..|.|+.|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 999999999999999999999999999998765 45689999999999999888777 778999999999999998
Q ss_pred hHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHh
Q 011674 157 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 234 (480)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 234 (480)
|.. .|.+++.|+.|+|..|.+... -.|.++++|+.|.+..|.+....-..|..+ .++++|+|+.|.+....-..++
T Consensus 213 p~r-~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l-~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 213 PQR-SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL-EKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred CHH-HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee-cccceeecccchhhhhhccccc
Confidence 874 577899999999999998776 578899999999999999887666666666 8999999999999887666665
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc
Q 011674 235 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 314 (480)
Q Consensus 235 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 314 (480)
.+..|+.|+++.|.|..+.++.+..+++|++|+++.|.++.+.++ .|..+..|++|+|++|.+..+.
T Consensus 291 -gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~------------sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 291 -GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG------------SFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred -ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh------------HHHHHHHhhhhcccccchHHHH
Confidence 499999999999999999899999999999999999999999887 8999999999999999999888
Q ss_pred cccccccccCceeecCCCCCChh---hHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 315 LFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 315 ~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
..+|..+.+|++|||++|.++.. ....|.++++|+.|++.||++..+.-.+|.+++.|++|||.+|.+
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 88899999999999999988653 345688899999999999999998889999999999999999997
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.8e-32 Score=256.39 Aligned_cols=358 Identities=21% Similarity=0.206 Sum_probs=208.8
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
|..|-+|+++|..-++.-++....|+.++.|.|...++.. +|+.++.+.+|+.|.+++|++... -..++.++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 4455566666633334455556666666666666666654 456666666666666666665543 24566666666666
Q ss_pred ccCCcCCc-hhhHhhcCCCCCcEEEccccCCCCCC----CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCC
Q 011674 82 LWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFIN 155 (480)
Q Consensus 82 l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~ 155 (480)
+.+|++.. -+|..+-++..|..|+|++|++...| ..+++-.|++++|+|..+|..++ ++..|-.|++++|.+..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 66665432 23334446666666666666666554 34556666666666666666666 66666666666666666
Q ss_pred hhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCC-hhHHHHHhhcCCCcEEEccCCCCCcchHHH
Q 011674 156 EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGI 232 (480)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 232 (480)
.|+... .+..|+.|++++|.+... ..+..+++|+.|.+++.+-+- ..+..+-.+ .+|..++++.|.+...+-..
T Consensus 165 LPPQ~R--RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPecl 241 (1255)
T KOG0444|consen 165 LPPQIR--RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPECL 241 (1255)
T ss_pred cCHHHH--HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHHH
Confidence 665433 556666666666665443 344445556666666543221 122233333 56666666666666555544
Q ss_pred HhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccc
Q 011674 233 LAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 312 (480)
Q Consensus 233 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 312 (480)
+ .+++|+.|+|++|.++.... ......+|++|+++.|+++..+. ++..++.|+.|.+.+|+++-
T Consensus 242 y--~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-------------avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 242 Y--KLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-------------AVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred h--hhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-------------HHhhhHHHHHHHhccCcccc
Confidence 3 46666666666666654322 23344566666666666665433 35566666666666666542
Q ss_pred c-ccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 313 A-TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 313 ~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
. +|..++.+..|+++..++|.+.- .|+.++.|+.|+.|.++.|++.. .|.++.-++.|+.||+..|+-
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence 2 35566666666666666665543 35666666666666666666543 344555556666667666653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-30 Score=245.29 Aligned_cols=370 Identities=18% Similarity=0.203 Sum_probs=301.8
Q ss_pred CCCCCcEEEcCCCcCC-HHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcE
Q 011674 25 SISTLEKLWLSETGLT-ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 103 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 103 (480)
-++-.+-+|+++|.++ +..|.....++.++.|.|....+.. .|+.++.|.+|++|.+++|++.. ....+..+|.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 3567788899999988 5578888899999999998887755 57899999999999999998875 4556888999999
Q ss_pred EEccccCCCC--CC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCc
Q 011674 104 LNLAWTGVTK--LP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 177 (480)
Q Consensus 104 L~l~~n~l~~--l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (480)
+.++.|++.. +| .+..|..||+++|.+.++|..+...+++-.|++++|++..+|... |.++..|-+|++++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~l-finLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSL-FINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchH-HHhhHhHhhhccccch
Confidence 9999998774 44 677889999999999999999999999999999999999888765 4588999999999999
Q ss_pred cCcc-hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHH
Q 011674 178 LSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 256 (480)
Q Consensus 178 l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 256 (480)
+..+ |.+..+..|++|++++|.+.......++.+ .+|+.|++++..-+-.........+.+|..++++.|.+.. .|+
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe 239 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE 239 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chH
Confidence 9888 678889999999999998877666666666 7888899998755432222222468899999999998864 567
Q ss_pred HhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCCh
Q 011674 257 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 336 (480)
Q Consensus 257 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 336 (480)
.+..+++|+.|++++|.++..-.. .+...+|++|+|+.|+++. .|.++..++.|+.|.+.+|+++-
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~-------------~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMT-------------EGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeecc-------------HHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccc
Confidence 788999999999999999876433 4556788999999999987 58889999999999999997643
Q ss_pred h-hHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCCceeeeeeeccccCCCCCC
Q 011674 337 V-SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG 414 (480)
Q Consensus 337 ~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 414 (480)
. .|..++.+.+|+.+...+|.+. ..|+.+..|+.|+.|.|+.|.+++-+.-.++......+.+..+..-+.|+.++.
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 2 3678899999999999998874 678888999999999999999998887777766666666666665555555544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.9e-30 Score=230.82 Aligned_cols=358 Identities=20% Similarity=0.213 Sum_probs=250.9
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+.|++|+++.| .+. ..++.++.+..|+.++..+|++.. .|.++.++.+|..|++.+|.+....+..+. ++.|++||
T Consensus 114 ~~l~~l~~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 114 ISLVKLDCSSN-ELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhhhhhcccc-cee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence 35667777777 344 345667777788888888888776 456677788888888888887776655555 78888888
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC---CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChh
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER 157 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 157 (480)
..+|-++. .|..++.+.+|..|+++.|++..+| +|..|.+++++.|.+..+|.... ++.+|..|++.+|.+..+|
T Consensus 190 ~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 190 CNSNLLET-LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred cchhhhhc-CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence 88887764 5667888888888888888877655 56667777777777777777766 7777777777777777777
Q ss_pred HHHhhhcCCCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCCChhHH------------------------------
Q 011674 158 EAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVE------------------------------ 206 (480)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~------------------------------ 206 (480)
.... -+.+|++||+++|.++.+ ..++++ .|+.|-+.+|.+.....+
T Consensus 269 de~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 269 DEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred hHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 6554 466777777777777777 455555 677777776654311000
Q ss_pred -----------HHHhhcCCCcEEEccCCCCCcchHHHHhcCC-CCCcEEEccCCCCChH---------------------
Q 011674 207 -----------MVACVGANLRNLNLSNTRFSSAGVGILAGHL-PNLEILSLSGTQIDDY--------------------- 253 (480)
Q Consensus 207 -----------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--------------------- 253 (480)
..... .+.+.|.+++-.++..+...|-..- .-+..+++++|++...
T Consensus 346 ~~~t~~~~~~~~~~~~-i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAI-ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhh-hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 00011 3445555665555555554442111 1245566666655432
Q ss_pred --HHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCC
Q 011674 254 --AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 331 (480)
Q Consensus 254 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 331 (480)
.+..++.+++|..|++++|.+...+.+ ++.+-.|+.|+++.|++.. .|..+..+..++.+-.++
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-------------~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEE-------------MGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASN 490 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchh-------------hhhhhhhheeccccccccc-chHHHhhHHHHHHHHhcc
Confidence 334456778888888888877766544 5666778888888887765 466666666677777777
Q ss_pred CCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCccc
Q 011674 332 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 383 (480)
Q Consensus 332 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~ 383 (480)
|++..+.+..+.++.+|..||+.+|.+.. .|..+++|.+|++|+++|||+-
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 88888877788999999999999999975 4667899999999999999973
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-28 Score=240.54 Aligned_cols=249 Identities=22% Similarity=0.272 Sum_probs=209.0
Q ss_pred CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcch-hhccCCCCCeee
Q 011674 116 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLD 194 (480)
Q Consensus 116 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~ 194 (480)
...+|++++++.+.+..+|+++..+.+|+.+....|.+...+.... ...+|++|...+|.+..++ .....+.|++|+
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 3468889999999999999888899999999999999877776544 5688899999999988884 445699999999
Q ss_pred CcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccc
Q 011674 195 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 274 (480)
Q Consensus 195 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l 274 (480)
+..|++.......+......+..|+.+.|++...+...- ..++.|+.|++.+|.+++.....+.+.++|+.|++++|.+
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e-~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE-NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccc-hhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 999999887666665553457888888888776653222 3467899999999999988777888999999999999999
Q ss_pred cccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEec
Q 011674 275 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 354 (480)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 354 (480)
..++.. .+.+++.|++|+|+||+++.+ |..+..++.|++|...+|.+.... .+..++.|+.+|++
T Consensus 396 ~~fpas------------~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 396 NSFPAS------------KLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLS 460 (1081)
T ss_pred ccCCHH------------HHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecc
Confidence 988776 789999999999999999885 688899999999999999998764 78899999999999
Q ss_pred CCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 355 DAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 355 ~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
.|.++..........++|++||++||..
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9999887665555559999999999983
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2e-28 Score=219.16 Aligned_cols=350 Identities=21% Similarity=0.242 Sum_probs=189.3
Q ss_pred hhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCC
Q 011674 22 HLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 101 (480)
Q Consensus 22 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L 101 (480)
+++.+..++.++.++|++.. .|..+..+.+|+.++.+.|.+.. .++.++.+..|+.++..+|++++ .|..+..+.+|
T Consensus 86 aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l 162 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKL 162 (565)
T ss_pred HHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHHHHHHHH
Confidence 33334444444444444433 23334444444444444444332 23334444444555554554443 23334444455
Q ss_pred cEEEccccCCCCCC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCc
Q 011674 102 SFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 177 (480)
Q Consensus 102 ~~L~l~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (480)
..+++.+|.+..++ .++.|+++|...|-+..+|+.++.+.+|+-|++..|.+...|. |.+|..|+.+.++.|.
T Consensus 163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe---f~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE---FPGCSLLKELHVGENQ 239 (565)
T ss_pred HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC---CCccHHHHHHHhcccH
Confidence 55555555555444 3556666666666666666666666666666666666655552 3356666666666666
Q ss_pred cCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChH--
Q 011674 178 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-- 253 (480)
Q Consensus 178 l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 253 (480)
+..+ ....+++++..||+.+|++.. .|..+..+ .+|+.|++++|.++..+... +++ +|+.|.+.+|.+..+
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL-rsL~rLDlSNN~is~Lp~sL--gnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL-RSLERLDLSNNDISSLPYSL--GNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred HHhhHHHHhcccccceeeecccccccc-CchHHHHh-hhhhhhcccCCccccCCccc--ccc-eeeehhhcCCchHHHHH
Confidence 6555 234456666666666666654 33344444 56666666666666555443 344 555555555543322
Q ss_pred ---------------------------------------------------------------HHHHhh--cCCCccEEE
Q 011674 254 ---------------------------------------------------------------AISYMS--MMPSLKFID 268 (480)
Q Consensus 254 ---------------------------------------------------------------~~~~~~--~~~~L~~L~ 268 (480)
+.+.|. .-.-....+
T Consensus 315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence 111111 001123334
Q ss_pred ccCccccccccccccchh----------hhhcH-HHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChh
Q 011674 269 ISNTDIKGFIQQVGAETD----------LVLSL-TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 337 (480)
Q Consensus 269 l~~~~l~~~~~~~~~~~~----------~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 337 (480)
+++|++.+.+.+...... .+.+. ..+..+++|..|++++|.+.+. |..++.+..|+.|+++.|++...
T Consensus 395 fskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 395 FSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred cccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccc
Confidence 444433332222110000 00000 2345667777788887777663 56666677788888888877654
Q ss_pred hHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 338 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 338 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
|..+.....++.+-.++|++....+..+..+.+|..||+.+|.+..
T Consensus 474 -P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 474 -PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred -hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 4555556667777777788877777778888999999999998744
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.9e-25 Score=217.42 Aligned_cols=355 Identities=20% Similarity=0.217 Sum_probs=232.7
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEc
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 82 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 82 (480)
+|+.|+|++| ++.+. +..+..+++|+.|.++.|.+.. .|....++.+|++|+|.+|... ..|..+..+.+|++|++
T Consensus 46 ~L~~l~lsnn-~~~~f-p~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNN-QISSF-PIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeecccc-ccccC-CchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 3778888887 45533 4456777888888888887766 4466778888888888777554 35778888888888888
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEcccc-------------------CCCC--CCCCCCCCE-EEcCCCcccchhc-----
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWT-------------------GVTK--LPNISSLEC-LNLSNCTIDSILE----- 135 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n-------------------~l~~--l~~~~~L~~-L~l~~~~l~~~~~----- 135 (480)
+.|.+.. .|..+..+..+..+..++| .+.. .....+++. |++++|.+..+.-
T Consensus 122 S~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 122 SFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred chhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccc
Confidence 8887653 2333333333333333322 1110 001112222 4444444331000
Q ss_pred -------------cCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCC
Q 011674 136 -------------GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIG 201 (480)
Q Consensus 136 -------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~ 201 (480)
.....++|+.|+.+.|.+...... ....+|+++++++|.++.+ ..+..+.+|+.++...|.++
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcchHHHHhcccceEecccchhHH
Confidence 001234555666666655532221 1356788888888887777 45567788888888888775
Q ss_pred ChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhh----------------------
Q 011674 202 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---------------------- 259 (480)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------- 259 (480)
. .+..+... .+|+.|.+..|.+...++.. +...+|++|++..|.+.......+.
T Consensus 278 ~-lp~ri~~~-~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 278 A-LPLRISRI-TSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred h-hHHHHhhh-hhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 4 33344444 66777777777666655533 3466677777777666543332222
Q ss_pred ---cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCCh
Q 011674 260 ---MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 336 (480)
Q Consensus 260 ---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 336 (480)
..+.|+.|.+.+|.+++...+ .+.++++|+.|+|+.|++..++...+.+++.|++|+|++|+++.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p------------~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFP------------VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchh------------hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 223566667777777665444 78889999999999999998877888999999999999999988
Q ss_pred hhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 337 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 337 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
+ +..+..++.|++|...+|++...+ .+..++.|+.+|++.|.+..
T Consensus 422 L-p~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 422 L-PDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred h-hHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhh
Confidence 6 477889999999999999987643 67788999999999998733
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.4e-21 Score=210.70 Aligned_cols=336 Identities=17% Similarity=0.136 Sum_probs=233.6
Q ss_pred hHHhhhCCCCCcEEEcCCCcC------CHHHHHHHcCC-CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchh
Q 011674 19 GMKHLLSISTLEKLWLSETGL------TADGIALLSSL-QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 91 (480)
Q Consensus 19 ~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 91 (480)
...+|.+|++|+.|.+..+.. ....|..|..+ .+|+.|.+.++.+... |..| ...+|+.|++.++++.. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-c
Confidence 456688899999998865532 22234455555 4589999988876543 4455 46789999999988774 4
Q ss_pred hHhhcCCCCCcEEEccccC-CCCCC---CCCCCCEEEcCCCc-ccchhccCCCCCCccEEEccCCC-CCChhHHHhhhcC
Q 011674 92 AAVLKMFPRLSFLNLAWTG-VTKLP---NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIET 165 (480)
Q Consensus 92 ~~~l~~l~~L~~L~l~~n~-l~~l~---~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 165 (480)
+..+..+++|+.|+++++. +..+| .+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|... ++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CC
Confidence 5566788999999998763 44444 57789999998874 56788888889999999999874 34444322 57
Q ss_pred CCceEEEccCCcc-CcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCc-------chHHHHhcCC
Q 011674 166 SLLSFLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-------AGVGILAGHL 237 (480)
Q Consensus 166 ~~L~~L~l~~~~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~~l 237 (480)
++|+.|++++|.. ..++. ..++|++|++++|.+..... .+ .+ ++|+.|.+.++.... ..+. ....+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP~-~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~~-~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFPS-NL-RL-ENLDELILCEMKSEKLWERVQPLTPL-MTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccccccc-cc-cc-cccccccccccchhhccccccccchh-hhhcc
Confidence 8899999988753 33332 24678899998888764322 11 23 678888777643211 1111 11235
Q ss_pred CCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccc
Q 011674 238 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 317 (480)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (480)
++|+.|++++|......|..++.+++|+.|++++|...+..|. .+ ++++|+.|++++|......+.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~- 843 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPD- 843 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCccccccc-
Confidence 7899999998876666677788899999999988865444443 12 678889999998754332232
Q ss_pred ccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCccc
Q 011674 318 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 383 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~ 383 (480)
..++|+.|+|++|.+... |..+..+++|+.|++++|.-....+..+..+++|+.+++++|.-.
T Consensus 844 --~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 844 --ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred --cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 236788999999988765 567888899999999886544444555566788888888888643
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-24 Score=194.22 Aligned_cols=268 Identities=19% Similarity=0.182 Sum_probs=173.5
Q ss_pred CcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCC-CCCCHHHHhhccCCCCCCEEEc
Q 011674 4 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDL 82 (480)
Q Consensus 4 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l 82 (480)
-..++|..| +|+..+..+|+.+++||.|||++|.|+.+.|++|.++++|.+|-+.+ |+|+......|.++..|+.|.+
T Consensus 69 tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 457788888 78888888999999999999999999998899999998888888776 8888888888999999999999
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccc-------------hhccCCCCCCcc
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS-------------ILEGNENKAPLA 144 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~-------------~~~~~~~~~~L~ 144 (480)
.-|++.-...++|..+++|..|.+..|.+..++ .+..++.+.+..|.+.. .|-.........
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888888888889999999999888877544 56677777777665221 111111111111
Q ss_pred EEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc---hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEcc
Q 011674 145 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 221 (480)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 221 (480)
...+...++..+...........+..--.+.+..... ..|..+++|+.|++++|+++.+...+|... ..+++|.|.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~-a~l~eL~L~ 306 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA-AELQELYLT 306 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch-hhhhhhhcC
Confidence 1111111111111111100011111111111211111 356666777777777777776666666666 667777777
Q ss_pred CCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccc
Q 011674 222 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 274 (480)
Q Consensus 222 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l 274 (480)
.|++.......| ..+..|+.|+|.+|+|+...|.+|....+|.+|++-.|.+
T Consensus 307 ~N~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 776666555555 3466777777777777766666666666677776665543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=5.1e-21 Score=208.17 Aligned_cols=328 Identities=20% Similarity=0.238 Sum_probs=235.9
Q ss_pred CCCCcEEecCCCC-----CCChhhHHhhhCC-CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCC
Q 011674 1 MTCLKELDLSRCV-----KVTDAGMKHLLSI-STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVL 74 (480)
Q Consensus 1 l~~L~~L~L~~~~-----~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 74 (480)
|++|+.|.+..+. .+....+..+..+ ++|+.|++.++.+.. .|..| .+.+|++|+++++.+.. .+..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLEK-LWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCccccc-cccccccC
Confidence 5788888886541 1111223445544 469999999988866 45555 57899999999998765 56677889
Q ss_pred CCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccC-CCCCC----CCCCCCEEEcCCC-cccchhccCCCCCCccEEEc
Q 011674 75 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTKLP----NISSLECLNLSNC-TIDSILEGNENKAPLAKISL 148 (480)
Q Consensus 75 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-l~~l~----~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l 148 (480)
++|+.|+++++......|. +..+++|++|++++|. +..+| .+++|+.|++++| .+..+|..+ .+++|+.|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 9999999998754434453 7788999999999874 44443 6789999999997 466777765 7889999999
Q ss_pred cCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCC-------ChhHHHHHhhcCCCcEEEcc
Q 011674 149 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIG-------DDSVEMVACVGANLRNLNLS 221 (480)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~~~L~~L~L~ 221 (480)
++|......+. ...+|+.|++++|.+..++....+++|++|.+.++... ...+ .....+++|+.|+++
T Consensus 712 sgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 712 SGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTP-LMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCcccccc----ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccch-hhhhccccchheeCC
Confidence 99865432221 24689999999999888866667888888888764321 1111 112223789999999
Q ss_pred CCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCC
Q 011674 222 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 301 (480)
Q Consensus 222 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 301 (480)
+|......+..+ +.+++|+.|++++|......|..+ .+++|+.|++++|......+. ..++|+
T Consensus 787 ~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---------------~~~nL~ 849 (1153)
T PLN03210 787 DIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---------------ISTNIS 849 (1153)
T ss_pred CCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---------------cccccC
Confidence 986555445444 579999999999875333334333 678999999999875444332 236789
Q ss_pred EEeCCCCCccccccccccccccCceeecCCC-CCChhhHHhhcCCCCCCEEEecCCc
Q 011674 302 RLNLEQTQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDAV 357 (480)
Q Consensus 302 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 357 (480)
+|+|++|.+.. .|..+..+++|+.|++++| ++... +..+..+++|+.+++++|.
T Consensus 850 ~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCc
Confidence 99999999876 4677888999999999997 56654 4456778889999999885
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-23 Score=186.72 Aligned_cols=301 Identities=19% Similarity=0.168 Sum_probs=200.5
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCcc
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 130 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l 130 (480)
+.-..+.|..|.|+.+++.+|+.+++|+.|||++|.|+.+.|++|..++.|..|-+.+ +|+|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg------------------~NkI 128 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG------------------NNKI 128 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc------------------CCch
Confidence 3466777888888888888888888888888888888888888887776655544443 2444
Q ss_pred cchhccCC-CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHH
Q 011674 131 DSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEM 207 (480)
Q Consensus 131 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~ 207 (480)
..+|...+ .+..++.|.+..|.+.-+... .|..++++..|.+..|.+..+ ..+..+..++.+.+..|.+...
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~-al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---- 203 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQD-ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---- 203 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHH-HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc----
Confidence 55555444 455555555555554433332 234667777777777776666 3556666667666666542211
Q ss_pred HHhhcCCCcEEE--ccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhh-cCCCccEEEccCccccccccccccc
Q 011674 208 VACVGANLRNLN--LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKGFIQQVGAE 284 (480)
Q Consensus 208 ~~~~~~~L~~L~--L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~ 284 (480)
.+|+++- +..+.+. + +.........+.+.++..+.+..|. ....+..--.+.+.+...-|.
T Consensus 204 -----CnL~wla~~~a~~~ie------t-sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---- 267 (498)
T KOG4237|consen 204 -----CNLPWLADDLAMNPIE------T-SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA---- 267 (498)
T ss_pred -----cccchhhhHHhhchhh------c-ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH----
Confidence 1222210 0000000 0 1111222223333444433333332 112222212233334433333
Q ss_pred hhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCccccc
Q 011674 285 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 364 (480)
Q Consensus 285 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 364 (480)
..|+.+++|++|+|++|+++.+...+|.++.++++|.|.+|++..+....|.++..|+.|++.+|+|+...+.
T Consensus 268 -------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 268 -------KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred -------HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 3799999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred CCCCCCCCcEEEcCCCcccCHHHHHHHHHhCCc
Q 011674 365 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 397 (480)
Q Consensus 365 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 397 (480)
.|....+|.+|++-+||+.|++.+.|+..|+..
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 999999999999999999999999999888753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.2e-20 Score=191.09 Aligned_cols=262 Identities=18% Similarity=0.185 Sum_probs=150.3
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCC-CCCCCEEEcCCCc
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCT 129 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~L~~L~l~~~~ 129 (480)
..-..|+++++.++. +|..+. ++|+.|++.+|+++.. |. ..++|++|++++|+++.+|. .++|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCc
Confidence 345566666666653 344443 2566666666666642 22 24566666666666666653 3466666666666
Q ss_pred ccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHH
Q 011674 130 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 209 (480)
Q Consensus 130 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 209 (480)
+..+|... ..|+.|++++|.+..++. .+++|+.|++++|.+..++.+ ...|+.|++++|.++...
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP----- 338 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP----- 338 (788)
T ss_pred hhhhhhch---hhcCEEECcCCccccccc-----cccccceeECCCCccccCCCC--cccccccccccCcccccc-----
Confidence 66655422 456666666666665543 135667777777666665432 235666666666665422
Q ss_pred hhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhh
Q 011674 210 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 289 (480)
Q Consensus 210 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 289 (480)
.++.+|+.|++++|.++..+. ..++|+.|++++|++... |. ..++|+.|++++|.+++.+..
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~l--------- 400 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPVL--------- 400 (788)
T ss_pred ccccccceEecCCCccCCCCC-----CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCCc---------
Confidence 121456677777776665432 134566666666666542 21 124566777777766653221
Q ss_pred cHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCccccc
Q 011674 290 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 364 (480)
Q Consensus 290 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 364 (480)
..+|+.|++++|+++.+ |.. +.+|+.|++++|+++.+ |..+..+++|+.|++++|.+++..+.
T Consensus 401 -------~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 -------PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -------ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHH
Confidence 14566677777766653 221 23566677777766643 45566666777777777766655433
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=1.7e-19 Score=171.04 Aligned_cols=281 Identities=24% Similarity=0.221 Sum_probs=162.1
Q ss_pred EEecCCCCCCC-hhhHHhhhCCCCCcEEEcCCCcCCHH----HHHHHcCCCCCCEEEcCCCCCC------HHHHhhccCC
Q 011674 6 ELDLSRCVKVT-DAGMKHLLSISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT------DLVLRSLQVL 74 (480)
Q Consensus 6 ~L~L~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~------~~~~~~~~~l 74 (480)
.|+|.++ .++ ......+..+++|++|+++++.+++. ++..+...++|++|+++++.+. ...+..+..+
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 5777777 454 44556667788899999999998664 3344557788999999988776 3345677788
Q ss_pred CCCCEEEccCCcCCchhhHhhcCCCC---CcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCC-CCccEEEccC
Q 011674 75 TKLEYLDLWGSQVSNRGAAVLKMFPR---LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENK-APLAKISLAG 150 (480)
Q Consensus 75 ~~L~~L~l~~~~i~~~~~~~l~~l~~---L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~ 150 (480)
++|++|++++|.+....+..+..+.. |++|++++|.+.+-. ...+...+..+ ++|++|++++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~--------------~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG--------------LRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH--------------HHHHHHHHHhCCCCceEEEcCC
Confidence 89999999999887655555554444 777777777655200 00111122222 4444444444
Q ss_pred CCCCChhH---HHhhhcCCCceEEEccCCccCcc------hhhccCCCCCeeeCcCCCCCChhHHHHHhh---cCCCcEE
Q 011674 151 TTFINERE---AFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNL 218 (480)
Q Consensus 151 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L 218 (480)
|.+..... ...+..++.|++|++++|.+.+. ..+..+++|++|++++|.+++.....+... +++|++|
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 44432110 11222345556666665555421 223344566666666666655444333222 1557777
Q ss_pred EccCCCCCcchHHHHhcCC----CCCcEEEccCCCCChHH----HHHhhcCCCccEEEccCccccccccccccchhhhhc
Q 011674 219 NLSNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 290 (480)
Q Consensus 219 ~L~~n~l~~~~~~~~~~~l----~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 290 (480)
++++|.+++.....+...+ +.|++|++++|.+++.. ...+..+++|+.+++++|.+...... ..
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~--------~~ 298 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ--------LL 298 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH--------HH
Confidence 7777766664444433322 56777777777766322 23344556777777777776644211 11
Q ss_pred HHHhhcC-CCCCEEeCCCCC
Q 011674 291 LTALQNL-NHLERLNLEQTQ 309 (480)
Q Consensus 291 ~~~~~~~-~~L~~L~L~~n~ 309 (480)
...+... +.|+++++.+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 299 AESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhhcCCchhhcccCCCC
Confidence 1234444 567777776664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=2.2e-20 Score=189.27 Aligned_cols=264 Identities=20% Similarity=0.208 Sum_probs=198.0
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEc
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 106 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 106 (480)
..-..|+++++.++. +|..+. ++|+.|++.+|.++.. |. .+++|++|++++|+++.. |. ..++|++|++
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 456678888888875 444443 4788888888887763 22 247888999988888864 32 2467888888
Q ss_pred cccCCCCCCC-CCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhc
Q 011674 107 AWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT 185 (480)
Q Consensus 107 ~~n~l~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 185 (480)
++|.++.++. ..+|+.|++++|.+..+|.. .++|+.|++++|.+..++.. ...|+.|.+++|.+..++.+
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----p~~L~~L~Ls~N~L~~LP~l- 340 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPTL- 340 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----cccccccccccCcccccccc-
Confidence 8888887774 35788889999988888763 36788999999888876541 34688888999988877643
Q ss_pred cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCcc
Q 011674 186 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 265 (480)
Q Consensus 186 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 265 (480)
..+|+.|++++|++..... .+.+|+.|++++|.+...+. .+.+|+.|++++|.++.... ..++|+
T Consensus 341 -p~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~Lt~LP~----l~s~L~ 405 (788)
T PRK15387 341 -PSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLPV----LPSELK 405 (788)
T ss_pred -ccccceEecCCCccCCCCC-----CCcccceehhhccccccCcc-----cccccceEEecCCcccCCCC----cccCCC
Confidence 2579999999998886322 22678889999998886542 24679999999999886432 236799
Q ss_pred EEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhh
Q 011674 266 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 342 (480)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 342 (480)
.|++++|.++..+.. ..+|+.|++++|+++. .|..+..+++|+.|+|++|.+++..+..+
T Consensus 406 ~LdLS~N~LssIP~l----------------~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 406 ELMVSGNRLTSLPML----------------PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEEccCCcCCCCCcc----------------hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 999999998865321 2467889999999986 47778889999999999999988766655
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=5.7e-18 Score=160.63 Aligned_cols=277 Identities=22% Similarity=0.175 Sum_probs=189.8
Q ss_pred EEEcCCCcCCH-HHHHHHcCCCCCCEEEcCCCCCCHH----HHhhccCCCCCCEEEccCCcCCc------hhhHhhcCCC
Q 011674 31 KLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVSN------RGAAVLKMFP 99 (480)
Q Consensus 31 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~------~~~~~l~~l~ 99 (480)
.|+|.++.+++ .....+..+++|++|+++++.++.. .+..+...++|++++++++.+.. ..+.++..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 3345667788899999999988654 34455677789999998887662 2233455565
Q ss_pred CCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCC---CCccEEEccCCCCCChhHHH---hhhcC-CCceEEE
Q 011674 100 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENK---APLAKISLAGTTFINEREAF---LYIET-SLLSFLD 172 (480)
Q Consensus 100 ~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~---~~~~~-~~L~~L~ 172 (480)
+|++|++++|.+.. ..+..+... ++|++|++++|.+....... .+..+ ++|+.|+
T Consensus 82 ~L~~L~l~~~~~~~------------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 82 GLQELDLSDNALGP------------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ceeEEEccCCCCCh------------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 66666666555432 111111111 55888888887776322211 23345 8999999
Q ss_pred ccCCccCcc------hhhccCCCCCeeeCcCCCCCChhHHHHHhhc---CCCcEEEccCCCCCcchHHHH---hcCCCCC
Q 011674 173 VSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGIL---AGHLPNL 240 (480)
Q Consensus 173 l~~~~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~---~~~l~~L 240 (480)
+++|.++.. ..+..+++|++|++++|.+.+.....++... ++|++|++++|.+++.....+ ...+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 999998832 3566778999999999999865544433222 599999999999987665433 3467899
Q ss_pred cEEEccCCCCChHHHHHhhc-----CCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc
Q 011674 241 EILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 315 (480)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (480)
++|++++|.+++.....+.. .+.|++|++++|.++.... ......+..+++|+++++++|.+++...
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~--------~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA--------KDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH--------HHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 99999999999755554442 3799999999999873311 1122356677899999999999987643
Q ss_pred cc----cccc-ccCceeecCCCC
Q 011674 316 FP----LSTF-KELIHLSLRNAS 333 (480)
Q Consensus 316 ~~----~~~~-~~L~~L~L~~n~ 333 (480)
.. +... +.|+++++.+|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCC
Confidence 33 3344 689999988875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.2e-17 Score=168.64 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred CCcEEEccccCCCCCC--CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCc
Q 011674 100 RLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 177 (480)
Q Consensus 100 ~L~~L~l~~n~l~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (480)
.|+.|++++|.++.++ ...+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~----s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP----SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh----CCCCEEECcCCc
Confidence 4445555555444444 12345555555555444444332 234555555555444433221 345555555554
Q ss_pred cCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHH
Q 011674 178 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 257 (480)
Q Consensus 178 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 257 (480)
+..++.- -.++|+.|++++|.++... ..+ +++|+.|++++|.++..+.. ..++|+.|++++|.++.. |..
T Consensus 274 L~~LP~~-l~~sL~~L~Ls~N~Lt~LP-~~l---p~sL~~L~Ls~N~Lt~LP~~----l~~sL~~L~Ls~N~Lt~L-P~~ 343 (754)
T PRK15370 274 ISCLPEN-LPEELRYLSVYDNSIRTLP-AHL---PSGITHLNVQSNSLTALPET----LPPGLKTLEAGENALTSL-PAS 343 (754)
T ss_pred cCccccc-cCCCCcEEECCCCccccCc-ccc---hhhHHHHHhcCCccccCCcc----ccccceeccccCCccccC-Chh
Confidence 4443210 1134555555555444321 111 12344445555544433221 123444455554444432 111
Q ss_pred hhcCCCccEEEccCcccc
Q 011674 258 MSMMPSLKFIDISNTDIK 275 (480)
Q Consensus 258 ~~~~~~L~~L~l~~~~l~ 275 (480)
+ +++|+.|++++|.++
T Consensus 344 l--~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 344 L--PPELQVLDVSKNQIT 359 (754)
T ss_pred h--cCcccEEECCCCCCC
Confidence 1 134445555544444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.6e-17 Score=169.65 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=107.8
Q ss_pred CCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCC--CCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCC
Q 011674 76 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 153 (480)
Q Consensus 76 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 153 (480)
+|+.|++++|+++.. |..+ .++|++|++++|.++.+|. ..+|+.|++++|.+..+|..+. .+|+.|++++|.+
T Consensus 200 ~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 200 QITTLILDNNELKSL-PENL--QGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 444444444444432 2211 1244444444444444431 1245555555555554444432 2455555555555
Q ss_pred CChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHH
Q 011674 154 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 233 (480)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 233 (480)
..+|..+ .++|+.|++++|.++.++.. ..+.|+.|++++|.++.... .+ +++|+.|++++|.++..+...
T Consensus 275 ~~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~Lt~LP~~l- 344 (754)
T PRK15370 275 SCLPENL----PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPE-TL---PPGLKTLEAGENALTSLPASL- 344 (754)
T ss_pred Ccccccc----CCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCc-cc---cccceeccccCCccccCChhh-
Confidence 4443321 13455555555555544211 11345566666665553221 11 145666666666665543211
Q ss_pred hcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccc
Q 011674 234 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 313 (480)
Q Consensus 234 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 313 (480)
+++|+.|++++|+++.. |..+ .++|+.|++++|.++..++. +. .+|+.|++++|++...
T Consensus 345 ---~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~~-------------l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 345 ---PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPEN-------------LP--AALQIMQASRNNLVRL 403 (754)
T ss_pred ---cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCHh-------------HH--HHHHHHhhccCCcccC
Confidence 35666666666666532 2222 24566666666666654332 11 2456666666666543
Q ss_pred cccc----ccccccCceeecCCCCCCh
Q 011674 314 TLFP----LSTFKELIHLSLRNASLTD 336 (480)
Q Consensus 314 ~~~~----~~~~~~L~~L~L~~n~l~~ 336 (480)
|.. ...++.+..|++.+|.++.
T Consensus 404 -P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 404 -PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -chhHHHHhhcCCCccEEEeeCCCccH
Confidence 222 2233566666776666653
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=1.7e-14 Score=128.41 Aligned_cols=207 Identities=21% Similarity=0.273 Sum_probs=145.1
Q ss_pred hhhccCCCCCeeeCcCCCCCChhHHHHHhh---cCCCcEEEccCCCCCcchHHHH------------hcCCCCCcEEEcc
Q 011674 182 CFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGIL------------AGHLPNLEILSLS 246 (480)
Q Consensus 182 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~------------~~~l~~L~~L~l~ 246 (480)
+++..+|+|++|++|+|.+...++..+..+ +..|++|.|.+|++.......+ .+..+.|+.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 355667777888888877766555544333 3667778888887766554432 1345689999999
Q ss_pred CCCCChHH----HHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc----ccc
Q 011674 247 GTQIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPL 318 (480)
Q Consensus 247 ~n~l~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~ 318 (480)
+|++.+.. ...|...+.|+.+.+..|.+..- +......++..|++|+.|+|..|.++.... ..+
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e--------G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE--------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCc--------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 99887543 34455778999999998887532 112334578899999999999998876543 335
Q ss_pred cccccCceeecCCCCCChhhHHhh-----cCCCCCCEEEecCCccCcccccC----CCCCCCCcEEEcCCCcc-cCHHHH
Q 011674 319 STFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWL-LTEDAI 388 (480)
Q Consensus 319 ~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~~----~~~~~~L~~l~l~~n~~-~~~~~~ 388 (480)
..+++|++|++++|.+.+.+...+ ...|+|+.+.+.+|.|+...... +...+.|..|+|++|.+ -.+..+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i 317 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGI 317 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhH
Confidence 567899999999998877655444 34789999999999988754432 33458999999999987 233455
Q ss_pred HHHHHhCC
Q 011674 389 LQFCKMHP 396 (480)
Q Consensus 389 ~~~~~~~~ 396 (480)
..+...++
T Consensus 318 ~ei~~~~~ 325 (382)
T KOG1909|consen 318 DEIASKFD 325 (382)
T ss_pred HHHHHhcc
Confidence 55555553
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-13 Score=122.95 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=61.9
Q ss_pred CCceEEEccCCccCcc------hhhccCCCCCeeeCcCCCCCChhH----HHHHhhcCCCcEEEccCCCCCcchHHHHh-
Q 011674 166 SLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILA- 234 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~- 234 (480)
+.|+++..++|.+... ..+...+.|+.+.+..|.|...+. ..+..+ ++|+.|+|.+|.++..+...+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHH
Confidence 4444444444444332 233444455555555554433322 222222 5555555555544443332221
Q ss_pred --cCCCCCcEEEccCCCCChHHHHHhh-----cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCC
Q 011674 235 --GHLPNLEILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 307 (480)
Q Consensus 235 --~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 307 (480)
+.+++|+.|++++|.+......+|. ..|+|+.+.+.+|.++... ...........+.|..|+|++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da--------~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA--------ALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH--------HHHHHHHHhcchhhHHhcCCc
Confidence 2334455555555555433222221 3455666666666555321 112222344456666666776
Q ss_pred CCc
Q 011674 308 TQV 310 (480)
Q Consensus 308 n~l 310 (480)
|.+
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 666
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=8.7e-16 Score=122.72 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=100.7
Q ss_pred hhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCc
Q 011674 23 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 102 (480)
Q Consensus 23 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 102 (480)
+-++.+++.|.+++|+++.+ |..++.+.+|+.|++.+|+++. .|..++.++.|++|++..|++. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 34566667777777777663 3445677777777777777655 4556677777777777766655 3566666666666
Q ss_pred EEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-
Q 011674 103 FLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF- 181 (480)
Q Consensus 103 ~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 181 (480)
.|++.+|.+.. ..+|..++.+..|+.|++++|.+...|+... ++++|+.|.+..|.+-.+
T Consensus 106 vldltynnl~e-----------------~~lpgnff~m~tlralyl~dndfe~lp~dvg--~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 106 VLDLTYNNLNE-----------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVG--KLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred hhhcccccccc-----------------ccCCcchhHHHHHHHHHhcCCCcccCChhhh--hhcceeEEeeccCchhhCc
Confidence 66666554432 1355555566666666666666666665433 566666666666665444
Q ss_pred hhhccCCCCCeeeCcCCCCCChhH
Q 011674 182 CFLTQMKALEHLDLSSSMIGDDSV 205 (480)
Q Consensus 182 ~~~~~~~~L~~L~l~~n~l~~~~~ 205 (480)
..++.+..|++|.+.+|+++...+
T Consensus 167 keig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecCh
Confidence 456666677777777776665433
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.3e-14 Score=128.68 Aligned_cols=212 Identities=24% Similarity=0.268 Sum_probs=134.8
Q ss_pred CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc----hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCC
Q 011674 139 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 214 (480)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 214 (480)
++++|+++.+.++.....+..-....|++++.|+++.|-+..+ .....+|+|+.|+++.|.+....-.......++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4555566666555544222111222567777777777766555 344567777777777776543222222222378
Q ss_pred CcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHh
Q 011674 215 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 294 (480)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (480)
|+.|.++.|+++...+......+|+|+.|++..|..-.........+..|++|+|++|++...... ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----------~~~ 267 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----------YKV 267 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----------ccc
Confidence 888888888888877777777788888888888842222222233456788888888887665322 256
Q ss_pred hcCCCCCEEeCCCCCcccccccc------ccccccCceeecCCCCCChh-hHHhhcCCCCCCEEEecCCccCcc
Q 011674 295 QNLNHLERLNLEQTQVSDATLFP------LSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 295 ~~~~~L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
+.++.|..|+++.+.+.++.... ...+++|+.|+++.|++.+. ....+..+++|+.|.+..|.+...
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 77888888888888877643222 24568888888888888553 234556678888888888777654
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.36 E-value=4.7e-13 Score=121.90 Aligned_cols=302 Identities=22% Similarity=0.259 Sum_probs=210.3
Q ss_pred CCCcEEEccccCCCCC-------CCCCCCCEEEcCCCc-cc--chhccCCCCCCccEEEccCCCC-CChhHHHhhhcCCC
Q 011674 99 PRLSFLNLAWTGVTKL-------PNISSLECLNLSNCT-ID--SILEGNENKAPLAKISLAGTTF-INEREAFLYIETSL 167 (480)
Q Consensus 99 ~~L~~L~l~~n~l~~l-------~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~ 167 (480)
.-|+.|.++++.-... ..++++++|++.+|. ++ ..-.....+.+|++|++..|.. +...-......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577788877654432 267888888888875 22 1222223788888888888643 33333334457899
Q ss_pred ceEEEccCCc-cCc--c-hhhccCCCCCeeeCcCCC-CCChhHHHHHhhcCCCcEEEccCC-CCCcchHHHHhcCCCCCc
Q 011674 168 LSFLDVSNSS-LSR--F-CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLE 241 (480)
Q Consensus 168 L~~L~l~~~~-l~~--~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~ 241 (480)
|++|+++.|. +.+ + +...++..++.+...+|. .........+..+.-+.++++.+| .+++.....+...+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999886 333 2 455677778888777773 333333344433355777777676 678888777777788999
Q ss_pred EEEccCC-CCChHHHHHhh-cCCCccEEEccCccc-cccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccc-c-ccc
Q 011674 242 ILSLSGT-QIDDYAISYMS-MMPSLKFIDISNTDI-KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-A-TLF 316 (480)
Q Consensus 242 ~L~l~~n-~l~~~~~~~~~-~~~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~-~~~ 316 (480)
.|..+++ .+++.....++ .+++|+.+.+.+|+- +..-.. .--++++.|+.+++..+.... . ...
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-----------~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-----------MLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh-----------hhhcCChhhhhhcccccceehhhhHhh
Confidence 9999885 45555555555 789999999999873 322111 013478899999999986432 2 122
Q ss_pred cccccccCceeecCCC-CCChhhHHhh----cCCCCCCEEEecCCc-cCcccccCCCCCCCCcEEEcCCCcccCHHHHHH
Q 011674 317 PLSTFKELIHLSLRNA-SLTDVSLHQL----SSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ 390 (480)
Q Consensus 317 ~~~~~~~L~~L~L~~n-~l~~~~~~~l----~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 390 (480)
.-.+++.|+++.+++| .+++.+...+ .....|+.+.++++. +++...+.+..|++|+.+++.+|..++..++..
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 2346899999999999 4555543344 346789999999997 455667778889999999999999999999999
Q ss_pred HHHhCCceeeeeeeccccCCC
Q 011674 391 FCKMHPRIEVWHELSVICPSD 411 (480)
Q Consensus 391 ~~~~~~~l~~~~~~~~~~~~~ 411 (480)
+....|++.+...+....++.
T Consensus 447 ~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 447 FATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred HHhhCccceehhhccCCCCcc
Confidence 999999999987777765543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.6e-13 Score=123.28 Aligned_cols=209 Identities=20% Similarity=0.258 Sum_probs=156.1
Q ss_pred cCCCceEEEccCCccCcch---hhccCCCCCeeeCcCCCCCCh-hHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCC
Q 011674 164 ETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 239 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 239 (480)
++..|+.+.+.++.+...+ ....|++++.||++.|-+... ..-.++.-+++|+.|+++.|.+...........+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 5788999999999877764 778999999999999977642 223344444999999999998766544444346789
Q ss_pred CcEEEccCCCCChHHHHH-hhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc-ccc
Q 011674 240 LEILSLSGTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFP 317 (480)
Q Consensus 240 L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~ 317 (480)
|+.|.++.|.++.-...+ ...+|+|+.|++..|........ ....+..|++|+|++|++.+.. ...
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------STKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------hhhhhhHHhhccccCCcccccccccc
Confidence 999999999998544444 34899999999999952222111 3455678999999999987753 234
Q ss_pred ccccccCceeecCCCCCChhhHHh------hcCCCCCCEEEecCCccCcc-cccCCCCCCCCcEEEcCCCcccC
Q 011674 318 LSTFKELIHLSLRNASLTDVSLHQ------LSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
.+.++.|+.|.++.|.+.++.... ...+++|++|++..|+|.+. ....+...++|+++.+..|++..
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 677899999999999887753222 35689999999999999763 23344556888888888888743
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=1.3e-14 Score=115.98 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=110.7
Q ss_pred CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-hhhccCCCCCeee
Q 011674 116 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD 194 (480)
Q Consensus 116 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~ 194 (480)
.+.++..|.+++|.++.+|+.+..+.+|+.|++.+|++...|.... .++.|+.|+++-|.+... ..|+.+|.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4566677778888888888888888888888888888777776543 677788888877777666 5777888888888
Q ss_pred CcCCCCCCh-hHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcc
Q 011674 195 LSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 273 (480)
Q Consensus 195 l~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 273 (480)
+.+|.+... .+..|..+ ..|+.|++++|.+...++.. +.+++|+.|.+.+|.+-. .|..++.+..|++|++.+|.
T Consensus 109 ltynnl~e~~lpgnff~m-~tlralyl~dndfe~lp~dv--g~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEILPPDV--GKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHH-HHHHHHHhcCCCcccCChhh--hhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccce
Confidence 888776542 23334444 56777777777776666554 567777777777776543 34456666677777777777
Q ss_pred ccccccc
Q 011674 274 IKGFIQQ 280 (480)
Q Consensus 274 l~~~~~~ 280 (480)
++..+|.
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 6665554
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.2e-12 Score=110.78 Aligned_cols=203 Identities=21% Similarity=0.242 Sum_probs=113.2
Q ss_pred CCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCC-CCChHHH-HHhhcCCCccE
Q 011674 189 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAI-SYMSMMPSLKF 266 (480)
Q Consensus 189 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~ 266 (480)
.|+++|+++..++......+-.-|.+|+.|.|.++.+.+.....++ .-.+|+.|+++.+ .++.... ..+..|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3555555555444433333332224555555555555544443332 2345555555543 2332211 12335555555
Q ss_pred EEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCc--ccc-ccccccccccCceeecCCC-CCChhhHHhh
Q 011674 267 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV--SDA-TLFPLSTFKELIHLSLRNA-SLTDVSLHQL 342 (480)
Q Consensus 267 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 342 (480)
|++++|.++...-. +..-.--++|..|+++|+.- ... .......||+|.+|||+.| .+++.....+
T Consensus 265 LNlsWc~l~~~~Vt----------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT----------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchhhh----------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 55555554332111 00111124566677776532 111 1122346788888888888 6666666778
Q ss_pred cCCCCCCEEEecCCccCc-ccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCCceeeeeee
Q 011674 343 SSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHEL 404 (480)
Q Consensus 343 ~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~l~~~~~~ 404 (480)
.+++.|++|.++.|.... ...-.+...|+|.+||+.+| +.+....-+.+..+++.+....
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKINCQH 395 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCcccccccee
Confidence 889999999999886322 22234456699999999999 4677888888888888766433
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.17 E-value=1.1e-11 Score=113.11 Aligned_cols=297 Identities=24% Similarity=0.249 Sum_probs=152.7
Q ss_pred CCcEEEcCCCcCCHH-HHHHH-cCCCCCCEEEcCCCC-CCHHHHhhc-cCCCCCCEEEccCC-cCCchhhHh-hcCCCCC
Q 011674 28 TLEKLWLSETGLTAD-GIALL-SSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAV-LKMFPRL 101 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~L~L~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~i~~~~~~~-l~~l~~L 101 (480)
.|+.|.++++.-.+. ....+ .++++++.|.+.+|. +++..-..+ ..|++|++|++..| .+++..... -..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 556666665542221 11222 356666666666663 333322223 35666777766663 344433332 2356666
Q ss_pred cEEEccccCCC-C------CCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhH-HHhhhcCCCceEEEc
Q 011674 102 SFLNLAWTGVT-K------LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE-AFLYIETSLLSFLDV 173 (480)
Q Consensus 102 ~~L~l~~n~l~-~------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l 173 (480)
++|+++|+.-. + ..++..++.+.+++|. -.+... ......+..+..+++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~-----------------------e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL-----------------------ELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc-----------------------cccHHHHHHHhccChHhhccch
Confidence 77777666321 1 1123333333333331 111100 111112344444554
Q ss_pred cCCc-cCcc---hhhccCCCCCeeeCcCC-CCCChhHHHHHhhcCCCcEEEccCC-CCCcchHHHHhcCCCCCcEEEccC
Q 011674 174 SNSS-LSRF---CFLTQMKALEHLDLSSS-MIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSG 247 (480)
Q Consensus 174 ~~~~-l~~~---~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 247 (480)
..|. ++.. ..-..+..|+.|+.+++ .+++.....+..-+.+|+.+-++.| .+++.....+..+++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 4443 2222 12234566677776665 3555555666655577777777776 466666666666777777777777
Q ss_pred CCCChH--HHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCc-cccccccccccccC
Q 011674 248 TQIDDY--AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV-SDATLFPLSTFKEL 324 (480)
Q Consensus 248 n~l~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~L 324 (480)
+..... ....-..++.|+.+.++.|........ ...-..-.....|..+.|++++. ++...+.+..+++|
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 654321 122222677777777777664322100 00000123456777888888763 44455566778888
Q ss_pred ceeecCCCC-CChhhH-HhhcCCCCCCEEEec
Q 011674 325 IHLSLRNAS-LTDVSL-HQLSSLSKLTNLSIR 354 (480)
Q Consensus 325 ~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~l~ 354 (480)
+.+++-.|+ ++.... ..-.++|+++..-+-
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 888888873 333322 233567777766543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.8e-11 Score=100.50 Aligned_cols=107 Identities=28% Similarity=0.339 Sum_probs=28.4
Q ss_pred CccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEcc
Q 011674 142 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 221 (480)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 221 (480)
.+++|++.+|.+..+... . ..+..|+.|++++|.++.++.+..++.|++|++++|.++.........+ ++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L-~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l-p~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENL-G-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL-PNLQELYLS 96 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH--TT--EEE-T
T ss_pred ccccccccccccccccch-h-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC-CcCCEEECc
Confidence 344444444444433221 0 0245566666666666666666666666666666666665432111223 666666666
Q ss_pred CCCCCcchHHHHhcCCCCCcEEEccCCCCC
Q 011674 222 NTRFSSAGVGILAGHLPNLEILSLSGTQID 251 (480)
Q Consensus 222 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 251 (480)
+|.+.+...-.....+++|+.|++.+|.++
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666554332222234555555555555443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.2e-11 Score=101.88 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=4.9
Q ss_pred CCCCEEEcCCCCCCHHHHhhcc-CCCCCCEEEccCCcCC
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQ-VLTKLEYLDLWGSQVS 88 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~ 88 (480)
.++++|+|+||.|+.+ +.++ .+.+|+.|++++|.|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~ 55 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT 55 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc
Confidence 3344555555544432 2333 2344444444444444
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.4e-11 Score=104.49 Aligned_cols=189 Identities=22% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCCcEEEcCCCcCCHHHH-HHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCC-cCCchhhH-hhcCCCCCcE
Q 011674 27 STLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAA-VLKMFPRLSF 103 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~-~l~~l~~L~~ 103 (480)
+.|+++||++..++.... ..+..|.+|+.|.+.|+++.+.+...+++..+|+.|+++.+ .++..... .+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 479999999999887654 34568999999999999999988889999999999999986 46544333 3578999999
Q ss_pred EEccccCCCCC------C-CCCCCCEEEcCCCcc----cchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEE
Q 011674 104 LNLAWTGVTKL------P-NISSLECLNLSNCTI----DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 172 (480)
Q Consensus 104 L~l~~n~l~~l------~-~~~~L~~L~l~~~~l----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 172 (480)
|+++||.+..- . --++|..|+++|+.- ..+..-...+++|.+|+++++....-.....|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999987631 1 236788899988742 233333338899999999988655433334455788999999
Q ss_pred ccCCccCcc---hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCc
Q 011674 173 VSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 216 (480)
Q Consensus 173 l~~~~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 216 (480)
++.|..-.. -.+...|.|.+|++.++ ..+..++.+...+++|+
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc-cCchHHHHHHHhCcccc
Confidence 998875443 35667788999998887 34445666655545554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3e-11 Score=105.66 Aligned_cols=133 Identities=25% Similarity=0.381 Sum_probs=90.6
Q ss_pred ccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCc
Q 011674 185 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 264 (480)
Q Consensus 185 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 264 (480)
...+.|+++|+++|.|+.. -+.+ .+.|.++.|++++|.+...+.- ..+++|+.|++++|.++.+. .+-..+.++
T Consensus 281 dTWq~LtelDLS~N~I~~i-DESv-KL~Pkir~L~lS~N~i~~v~nL---a~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQI-DESV-KLAPKLRRLILSQNRIRTVQNL---AELPQLQLLDLSGNLLAECV-GWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchhhh-hhhh-hhccceeEEeccccceeeehhh---hhcccceEeecccchhHhhh-hhHhhhcCE
Confidence 3445677777777766532 1222 2237777888888877766652 24778888888888766532 233466778
Q ss_pred cEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc-cccccccccCceeecCCCCCChh
Q 011674 265 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDV 337 (480)
Q Consensus 265 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~ 337 (480)
+.|.+++|.+... ..++.+.+|..|++++|+|.... ...++++|-|+.+.|.+|.+...
T Consensus 355 KtL~La~N~iE~L--------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeeehhhhhHhhh--------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888888876644 25677788888888888886542 34577888888888888877654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.7e-11 Score=107.09 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=94.2
Q ss_pred CCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccc
Q 011674 238 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 317 (480)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (480)
..|++|++++|.++.+ ...+.-.|.++.|+++.|.+... ..++.+++|+.|+|++|.++.. ..+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--------------~nLa~L~~L~~LDLS~N~Ls~~-~Gw 347 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--------------QNLAELPQLQLLDLSGNLLAEC-VGW 347 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--------------hhhhhcccceEeecccchhHhh-hhh
Confidence 4577888888877653 34455667888888888887755 2467778888888888877653 444
Q ss_pred ccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc-cccCCCCCCCCcEEEcCCCcccC
Q 011674 318 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
-..+.+.+.|.|++|.+.+.. .+..+-+|..||+++|+|... ....+.++|.|+++.+.+||+..
T Consensus 348 h~KLGNIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 556778888888888776643 567778888888888888664 33456777888888888888733
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=1.5e-11 Score=116.50 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=159.1
Q ss_pred cCCCcccchhccCC--CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCC
Q 011674 125 LSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIG 201 (480)
Q Consensus 125 l~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~ 201 (480)
|++-.+..+|.+.. .+..-...+++.|.+..+|..+. .+..|+.+.+..|.+..+ .++.++..|.+++++.|++.
T Consensus 57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccchhhcCCCccccccccchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 33334444444433 34444567777777777766443 456688888888888877 68888999999999999988
Q ss_pred ChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcccccccccc
Q 011674 202 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV 281 (480)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 281 (480)
.... .++. --|+.|.+++|+++..+... +....|..|+.+.|.+.... ..++++.+|+.|.+..|.+..++++
T Consensus 135 ~lp~-~lC~--lpLkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~E- 207 (722)
T KOG0532|consen 135 HLPD-GLCD--LPLKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEE- 207 (722)
T ss_pred cCCh-hhhc--CcceeEEEecCccccCCccc--ccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHH-
Confidence 6443 3444 46999999999999877766 46889999999999987654 4578899999999999999988776
Q ss_pred ccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhh---cCCCCCCEEEecCCc
Q 011674 282 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSKLTNLSIRDAV 357 (480)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~ 357 (480)
+..+ .|.+||+++|++.. +|..|..+..|++|.|.+|.+.... ..+ +...-.++|+..-|+
T Consensus 208 ------------l~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPP-AqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 ------------LCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPP-AQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ------------HhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCCh-HHHHhccceeeeeeecchhcc
Confidence 5544 59999999999987 5888999999999999999998753 333 334456888888885
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.05 E-value=4.1e-10 Score=97.29 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=123.5
Q ss_pred HHcCCCCCCEEEcCCCCCCHHHHhhc----cCCCCCCEEEccCCc---CCchhhH-------hhcCCCCCcEEEccccCC
Q 011674 46 LLSSLQNLSVLDLGGLPVTDLVLRSL----QVLTKLEYLDLWGSQ---VSNRGAA-------VLKMFPRLSFLNLAWTGV 111 (480)
Q Consensus 46 ~~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~---i~~~~~~-------~l~~l~~L~~L~l~~n~l 111 (480)
.+..+..++.++|+||.|.+....++ ++-.+|+..+++.-. ..+..+. ++-+||+|+..+|+.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 33457777888888887776655544 344577777776532 2222232 223344444444443332
Q ss_pred CCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCC
Q 011674 112 TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 191 (480)
Q Consensus 112 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~ 191 (480)
..- ....+.+.+.+...|.+|.+++|.++.+.+.-.... |.. +..| .-...-|.|+
T Consensus 105 g~~--------------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka---l~~--la~n-----KKaa~kp~Le 160 (388)
T COG5238 105 GSE--------------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA---LFH--LAYN-----KKAADKPKLE 160 (388)
T ss_pred Ccc--------------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH---HHH--HHHH-----hhhccCCCce
Confidence 210 001122233345555666666655543322111000 000 0000 1234567788
Q ss_pred eeeCcCCCCCChhHHHHHhhc---CCCcEEEccCCCCCcchHHHHh----cCCCCCcEEEccCCCCChHH----HHHhhc
Q 011674 192 HLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDDYA----ISYMSM 260 (480)
Q Consensus 192 ~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~~~ 260 (480)
...+..|++.......++..+ ..|+++.+..|.|...+...+. ..+.+|+.|++.+|.++... ..+++.
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 888888887765555554433 4688888888888766544321 23678888888888777433 334456
Q ss_pred CCCccEEEccCccccccccccccchhhhhcHHHhh--cCCCCCEEeCCCCCcc
Q 011674 261 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVS 311 (480)
Q Consensus 261 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~ 311 (480)
++.|++|.+..|-++.... ...+..|. ..++|..|.+..|.+.
T Consensus 241 W~~lrEL~lnDClls~~G~--------~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGV--------KSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cchhhhccccchhhccccH--------HHHHHHhhhhcCCCccccccchhhhc
Confidence 6677888887776653311 11112222 2466677776666543
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.8e-10 Score=110.16 Aligned_cols=195 Identities=30% Similarity=0.381 Sum_probs=131.4
Q ss_pred EEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCC-CCCEEEccCCcCCchhhHhhcCCCCCcEEEcccc
Q 011674 31 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT-KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 109 (480)
Q Consensus 31 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n 109 (480)
.+++..+.+... ...+..++.++.|++.++.++.. +....... +|+.|++++|.+.. .+..++.++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 466666666332 23344667777777777777664 23344443 77778887777764 3344667777888888888
Q ss_pred CCCCCC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCc-chhh
Q 011674 110 GVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-FCFL 184 (480)
Q Consensus 110 ~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~ 184 (480)
++..++ ..++|+.|++++|.+..+|..+.....|+++.+++|.....+... .++.++..+.+.+|.+.. ...+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~--~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL--SNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhh--hhcccccccccCCceeeeccchh
Confidence 777765 356777888888888887777666677888888877544444322 256777777777777766 3666
Q ss_pred ccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHH
Q 011674 185 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 233 (480)
Q Consensus 185 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 233 (480)
..++.+++|++++|.+..... ++.. .+++.|+++++.+........
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~-~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSL-TNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccccccceecccccccccccc--cccc-CccCEEeccCccccccchhhh
Confidence 777778888888888776444 4444 778888888887776655543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=1.7e-10 Score=120.54 Aligned_cols=174 Identities=26% Similarity=0.294 Sum_probs=103.5
Q ss_pred CCCCCcEEEcCCCc--CCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCc
Q 011674 25 SISTLEKLWLSETG--LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 102 (480)
Q Consensus 25 ~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 102 (480)
.++.|++|-+..|. +.......|..++.|++|+|++|.-.+..|..++.+-+||+|+++++.+. ..|..+.++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 45578888777775 44444556777888888888887776777888888888888888888877 4677778888888
Q ss_pred EEEccccCCC-C----CCCCCCCCEEEcCCCccc---chhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCce----E
Q 011674 103 FLNLAWTGVT-K----LPNISSLECLNLSNCTID---SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS----F 170 (480)
Q Consensus 103 ~L~l~~n~l~-~----l~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~ 170 (480)
+|++..+.-. . ...+++|++|.+...... ..-..+..+.+|+.+....... .+.. .+.....|. .
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e--~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE--DLLGMTRLRSLLQS 698 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHh--hhhhhHHHHHHhHh
Confidence 8888766422 1 124778888877665422 1222334555555555533322 0000 111222222 2
Q ss_pred EEccCCcc-CcchhhccCCCCCeeeCcCCCCCC
Q 011674 171 LDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGD 202 (480)
Q Consensus 171 L~l~~~~l-~~~~~~~~~~~L~~L~l~~n~l~~ 202 (480)
+.+.++.. +....+..+.+|+.|.+.++.+..
T Consensus 699 l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 699 LSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhcccccceeecccccccCcceEEEEcCCCch
Confidence 22222222 222556667777777777776653
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=2e-09 Score=105.15 Aligned_cols=175 Identities=29% Similarity=0.425 Sum_probs=76.0
Q ss_pred CCceEEEccCCccCcchhhccCC--CCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 166 SLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
+.+..|++.+|.+..++...... +|+.|++++|.+.... ..+..+ ++|+.|++++|.+.+.+.... ..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNL-PNLKNLDLSFNDLSDLPKLLS--NLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhcc-ccccccccCCchhhhhhhhhh--hhhhhhhe
Confidence 34444444444444443322222 4444444444443321 122222 444444444444444443321 24445555
Q ss_pred EccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccccc
Q 011674 244 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 323 (480)
Q Consensus 244 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 323 (480)
++++|++....+. +.....|+++.+++|.+...+. .+..+.++..+.+.+|++... +..++.+++
T Consensus 192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~ 256 (394)
T COG4886 192 DLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLEDL-PESIGNLSN 256 (394)
T ss_pred eccCCccccCchh-hhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeeec-cchhccccc
Confidence 5555544433221 1222334555555543222111 234444455555555554432 344445555
Q ss_pred CceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 324 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 324 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
++.|++++|.+++... +....+++.|++++|.+...
T Consensus 257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 5555555555554432 44555555555555555443
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.93 E-value=2.5e-09 Score=92.52 Aligned_cols=221 Identities=20% Similarity=0.195 Sum_probs=123.2
Q ss_pred hhCCCCCcEEEcCCCcCCHHHHHHH----cCCCCCCEEEcCCCCC---CHH-------HHhhccCCCCCCEEEccCCcCC
Q 011674 23 LLSISTLEKLWLSETGLTADGIALL----SSLQNLSVLDLGGLPV---TDL-------VLRSLQVLTKLEYLDLWGSQVS 88 (480)
Q Consensus 23 l~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~~---~~~-------~~~~~~~l~~L~~L~l~~~~i~ 88 (480)
+.-+..+..++|++|.|...-..++ .+-.+|+..++++-.. .+. ...++.+||+|+.++|++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4457888888888888876555444 3567788888876421 122 3345578899999999998877
Q ss_pred chhhH----hhcCCCCCcEEEccccCCCCCCCCC---CCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChh---H
Q 011674 89 NRGAA----VLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER---E 158 (480)
Q Consensus 89 ~~~~~----~l~~l~~L~~L~l~~n~l~~l~~~~---~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~---~ 158 (480)
...|. .+.+-+.|.+|.+++|++..+.+-. .|.+| ..-.....-+.|+.+....|++...+ .
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 55444 3456677888888887766433100 00000 00011112233444444444433211 1
Q ss_pred HHhhhcCCCceEEEccCCccCcc-------hhhccCCCCCeeeCcCCCCCChhHHHHHhhc---CCCcEEEccCCCCCcc
Q 011674 159 AFLYIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSA 228 (480)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~ 228 (480)
...+....+|+.+.+..|+|..- ..+.-+.+|+.||+..|-++..+...++... +.|++|.+.+|-++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 22232335677777777766543 1233456777777777766655555444332 3456777777766665
Q ss_pred hHHHHhc-----CCCCCcEEEccCCCCC
Q 011674 229 GVGILAG-----HLPNLEILSLSGTQID 251 (480)
Q Consensus 229 ~~~~~~~-----~l~~L~~L~l~~n~l~ 251 (480)
+...++. ..|+|..|...+|.+.
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhhc
Confidence 5554432 2356666666665443
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=2.8e-11 Score=114.64 Aligned_cols=184 Identities=19% Similarity=0.249 Sum_probs=128.6
Q ss_pred EEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCC
Q 011674 6 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS 85 (480)
Q Consensus 6 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 85 (480)
..||+.| .+.+ .+..++.|..|+.+.+..|.+.. +|..++++..|++|+|+.|+++.. |..+..|+ |+.|.+++|
T Consensus 79 ~aDlsrN-R~~e-lp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRN-RFSE-LPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhcccc-cccc-CchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecC
Confidence 3456666 3442 34555667777778888777765 566777888888888888877653 45555555 888888888
Q ss_pred cCCchhhHhhcCCCCCcEEEccccCCCCCC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHh
Q 011674 86 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL 161 (480)
Q Consensus 86 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 161 (480)
+++. +|..++.++.|..|+.+.|.+..++ ++.+|+.|.+++|++..+|+.+. .-.|..|+++.|++..+|..
T Consensus 154 kl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~-- 229 (722)
T KOG0532|consen 154 KLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVD-- 229 (722)
T ss_pred cccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchh--
Confidence 8774 5666777778888888888877765 56777888888888888888777 66778888888888877764
Q ss_pred hhcCCCceEEEccCCccCcchh----hccCCCCCeeeCcCC
Q 011674 162 YIETSLLSFLDVSNSSLSRFCF----LTQMKALEHLDLSSS 198 (480)
Q Consensus 162 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~n 198 (480)
|.++..|++|.|.+|.+...++ -+...-.++|+..-|
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 4478888888888888776631 122233455555555
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=2e-10 Score=112.35 Aligned_cols=103 Identities=28% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCCCcEEEccccCCCC----CCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEE
Q 011674 97 MFPRLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 172 (480)
Q Consensus 97 ~l~~L~~L~l~~n~l~~----l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 172 (480)
.+..++.+++..|.+.. +..+.+|+.+++.+|.+..+...+..+++|++|++++|.+..+.+.- .++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh---hccchhhhe
Confidence 34445555555555544 44555666666666666655444444555555555555554443321 234455555
Q ss_pred ccCCccCcchhhccCCCCCeeeCcCCCCCC
Q 011674 173 VSNSSLSRFCFLTQMKALEHLDLSSSMIGD 202 (480)
Q Consensus 173 l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 202 (480)
+++|.+..+..+..++.|+.+++++|.+..
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhh
Confidence 555555555555555555555555555543
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=5e-09 Score=107.23 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=83.1
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
.++.|+|++|.+.+..|..++++++|+.|+|++|.+.+..|..++.+++|+.|++++|.+++..|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCCC-CC----C-CCCCCEEEcCCCcc
Q 011674 108 WTGVTK-LP----N-ISSLECLNLSNCTI 130 (480)
Q Consensus 108 ~n~l~~-l~----~-~~~L~~L~l~~~~l 130 (480)
+|.+.+ +| . ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 888774 33 1 23556777777753
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.2e-09 Score=73.80 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCc
Q 011674 299 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 357 (480)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 357 (480)
+|++|++++|+++.+.+..|..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544444444445555555555555544444444455555555555443
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.8e-09 Score=113.02 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=64.1
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCC--CCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP--VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
...|...+.++.+... +.. ..+++|++|-+.+|. +.......|..++.|++||+++|.--+..|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4445555555544331 111 134456666666654 333334445666666666666554444455555555555554
Q ss_pred EccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCc
Q 011674 105 NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 177 (480)
Q Consensus 105 ~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (480)
++ +++.+..+|.++.+++.|.+|++..+.....++. ....+++|++|.+....
T Consensus 601 ~L-------------------~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DL-------------------SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred cc-------------------cCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 44 4455555555555555555555555443222211 11135666666655443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=1e-08 Score=105.00 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=80.7
Q ss_pred ccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhc
Q 011674 264 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 343 (480)
Q Consensus 264 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 343 (480)
++.|++++|.+.+..+. .+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|++++..+..++
T Consensus 420 v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 66777777777777666 677778888888888887777777777778888888888887777777777
Q ss_pred CCCCCCEEEecCCccCcccccCCCCC-CCCcEEEcCCCcccC
Q 011674 344 SLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT 384 (480)
Q Consensus 344 ~l~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~l~l~~n~~~~ 384 (480)
.+++|+.|++++|.+++..+..+... .++..+++.+|+..|
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 78888888888888777766655442 456677777776544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=3e-10 Score=111.05 Aligned_cols=244 Identities=24% Similarity=0.292 Sum_probs=170.0
Q ss_pred CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeC
Q 011674 116 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 195 (480)
Q Consensus 116 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 195 (480)
.+..++.++++.|.+..+-..+..+++|+.|++.+|.+..+... ...+++|++|++++|.|+.+..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhhee
Confidence 45667777788888887666677889999999999988876652 2357899999999999999988888888999999
Q ss_pred cCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcccc
Q 011674 196 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 275 (480)
Q Consensus 196 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 275 (480)
++|.+... ..+..+ ..|+.+++++|.+....... ...+..++.+.+.+|.+.... .+..+..+..+++..|.+.
T Consensus 148 ~~N~i~~~--~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 148 SGNLISDI--SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCcchhc--cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 99988743 233333 78888889988888777621 135788888888888776442 2333344555577777766
Q ss_pred ccccccccchhhhhcHHHhhcCC--CCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEe
Q 011674 276 GFIQQVGAETDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 353 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 353 (480)
...+ +..+. .|+.+++++|.+.... ..+..+..+..+++.+|++.... .+...+.+..+..
T Consensus 222 ~~~~--------------l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 222 KLEG--------------LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWL 284 (414)
T ss_pred eccC--------------cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhcc
Confidence 4422 12222 3788889998887632 55667788888888888776643 3455666777777
Q ss_pred cCCccCccc---ccC-CCCCCCCcEEEcCCCcccC
Q 011674 354 RDAVLTNSG---LGS-FKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 354 ~~n~i~~~~---~~~-~~~~~~L~~l~l~~n~~~~ 384 (480)
..+.+.... ... ....+.+..+.+.+++.-.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 285 NDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred CcchhcchhhhhccccccccccccccccccCcccc
Confidence 777655321 111 3344788888888887633
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.2e-09 Score=73.84 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=37.8
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccC
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG 110 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~ 110 (480)
++|++|++++|.+....+..|.++++|++|++++|.++...+.+|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666666666555666666666666666666666666666666666666666654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.5e-09 Score=92.13 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=90.7
Q ss_pred CCEEEcCCCCCCHHHH-hhc-cCCCCCCEEEccCCcCCchh--hHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCC
Q 011674 53 LSVLDLGGLPVTDLVL-RSL-QVLTKLEYLDLWGSQVSNRG--AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNC 128 (480)
Q Consensus 53 L~~L~L~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~i~~~~--~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~ 128 (480)
++.|.+.++.+..+.. ..| ..++.++.+||.+|.|++.. ...+.++|.|++|+++.|++..
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s--------------- 111 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS--------------- 111 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC---------------
Confidence 3344445554443211 112 34556666666666666432 2234556666666666655442
Q ss_pred cccchhccC-CCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc----hhhc-cCCCCCeeeCcCCCCCC
Q 011674 129 TIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLT-QMKALEHLDLSSSMIGD 202 (480)
Q Consensus 129 ~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~-~~~~L~~L~l~~n~l~~ 202 (480)
....+ ...++|+.|.+.+..+.-.........+|.++.|.++.|.++.+ .... .-+.+.+|....|....
T Consensus 112 ----~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~ 187 (418)
T KOG2982|consen 112 ----DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL 187 (418)
T ss_pred ----ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence 21222 13344444444444332111111222344444444444432221 0111 11233344333332110
Q ss_pred -hhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChH-HHHHhhcCCCccEEEccCcccc
Q 011674 203 -DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIK 275 (480)
Q Consensus 203 -~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~~~l~ 275 (480)
.....+...++++..+.+..|.+.......-...++.+..|+++.+++.+. ..+.+..++.|..|.++++.+.
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 011122233366666666666665555444434455555666666666542 2344556666666666665544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.4e-08 Score=89.16 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=122.0
Q ss_pred cCCCceEEEccCCccCcc----hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCC
Q 011674 164 ETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 239 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 239 (480)
.++.++.+++..|.++.+ ..+.++|.|+.|+++.|.+....-...... .+|+.|.|.+..+.......+...+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345666666666666665 244567777777777777665332221233 778888888888887777777777888
Q ss_pred CcEEEccCCCCChHH--HHHhh-cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc-c
Q 011674 240 LEILSLSGTQIDDYA--ISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-L 315 (480)
Q Consensus 240 L~~L~l~~n~l~~~~--~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~ 315 (480)
+++|+++.|.+.... ..... ..+.++.++...|........ ...-+-++++..+.+..|.+.+.. .
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~----------~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK----------NKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH----------HhHHhhcccchheeeecCcccchhhc
Confidence 888888888433211 11111 223566666666654322111 122345678888888888876643 3
Q ss_pred ccccccccCceeecCCCCCChh-hHHhhcCCCCCCEEEecCCccCcc
Q 011674 316 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 316 ~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
.....+|.+.-|.|+.+++.+. ..+.+.++++|..|.++++.+.+.
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 3455677888899999988764 346788899999999999988764
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=5.2e-10 Score=109.08 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=36.1
Q ss_pred CCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCc
Q 011674 117 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 196 (480)
Q Consensus 117 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~ 196 (480)
++.|+.|+|++|++..+. .+..+.+|++|+|+.|.+..++... ...|. |+.|.+++|.++.+..+.++.+|+.||++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~-~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLS-MVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccc-hhhhh-heeeeecccHHHhhhhHHhhhhhhccchh
Confidence 344444444444444443 3334444444444444444333211 11222 44555555555444444455555555555
Q ss_pred CCCC
Q 011674 197 SSMI 200 (480)
Q Consensus 197 ~n~l 200 (480)
+|-+
T Consensus 263 yNll 266 (1096)
T KOG1859|consen 263 YNLL 266 (1096)
T ss_pred Hhhh
Confidence 5443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=8.3e-08 Score=98.08 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=136.3
Q ss_pred CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCH-------------HHHhhc--cCCCCCCEEEccCCc-CC
Q 011674 25 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-------------LVLRSL--QVLTKLEYLDLWGSQ-VS 88 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-------------~~~~~~--~~l~~L~~L~l~~~~-i~ 88 (480)
.--++..+++.+..........+.+.. |++|.+++..... ..-..+ ..-.+|++|++++.. +.
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 344667777777666665555555555 7888776542111 111111 112489999998864 33
Q ss_pred chhhHhhc-CCCCCcEEEccccCCCC------CCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHh
Q 011674 89 NRGAAVLK-MFPRLSFLNLAWTGVTK------LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFL 161 (480)
Q Consensus 89 ~~~~~~l~-~l~~L~~L~l~~n~l~~------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 161 (480)
...+..++ .+|.|+.|.+.+-.+.. +.++++|..||+++++++.+ .++..+++|+.|.+.+-.+........
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 33344443 57999999998876653 45889999999999999888 778899999999999988876554444
Q ss_pred hhcCCCceEEEccCCccCcc--------hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccC
Q 011674 162 YIETSLLSFLDVSNSSLSRF--------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 222 (480)
Q Consensus 162 ~~~~~~L~~L~l~~~~l~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 222 (480)
.-++++|+.||+|....... ..-..+|+|+.||++++.+.....+.+....++|+.+.+-+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 45799999999997654332 34456899999999999988877777766657777665443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.2e-09 Score=104.83 Aligned_cols=131 Identities=22% Similarity=0.276 Sum_probs=99.2
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccc
Q 011674 239 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 318 (480)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 318 (480)
.|...+.++|++... ..++.-++.++.|++++|+++.. ..++.|+.|++|||+.|.+..+..-..
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--------------~~Lr~l~~LkhLDlsyN~L~~vp~l~~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--------------DNLRRLPKLKHLDLSYNCLRHVPQLSM 229 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--------------HHHHhcccccccccccchhccccccch
Confidence 466777788877643 34566778899999999998765 368899999999999998887654444
Q ss_pred cccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccc-cCCCCCCCCcEEEcCCCcccCHHH
Q 011674 319 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKPPRSLKLLDLHGGWLLTEDA 387 (480)
Q Consensus 319 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~ 387 (480)
.+|. |+.|.+++|.++... .+.++.+|+.||+++|-+.+..- ..+..+..|+.|+|.|||+.|..-
T Consensus 230 ~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 230 VGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 5565 999999999887653 57788999999999998876422 223334778999999999876543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.46 E-value=2.9e-07 Score=94.20 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCcEEecCCCCCCChhhHHhhh-CCCCCcEEEcCCCcCCHH-HHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 3 CLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+|++|+|+|...+...++..++ .+|.|++|.+.+-.+... ......++++|..||++++.++.. ..++++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 6888888888777777777776 478888888887665432 234445888888888888888775 677888888888
Q ss_pred EccCCcCCc-hhhHhhcCCCCCcEEEccccCCCCCC-----------CCCCCCEEEcCCCccc
Q 011674 81 DLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP-----------NISSLECLNLSNCTID 131 (480)
Q Consensus 81 ~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~l~~l~-----------~~~~L~~L~l~~~~l~ 131 (480)
.+.+-.+.. .....+-++++|+.||+|......-+ .+++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 887766553 23334567888888888865433211 4677888888877665
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.34 E-value=5.4e-07 Score=90.66 Aligned_cols=133 Identities=26% Similarity=0.336 Sum_probs=79.6
Q ss_pred CCCCccEEEccCCCCCCh-hHHHhhhcCCCceEEEccCC-c-cCc-----chhhccCCCCCeeeCcCCC-CCChhHHHHH
Q 011674 139 NKAPLAKISLAGTTFINE-REAFLYIETSLLSFLDVSNS-S-LSR-----FCFLTQMKALEHLDLSSSM-IGDDSVEMVA 209 (480)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~-~-l~~-----~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~ 209 (480)
.++.|+.+.+.++..... ........++.|+.|+++.+ . +.. ......+++|+.|+++++. +++.....++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666533221 11112235677777777652 1 111 1234456777888887776 7777777777
Q ss_pred hhcCCCcEEEccCCC-CCcchHHHHhcCCCCCcEEEccCCCCC-hH-HHHHhhcCCCccEEEccC
Q 011674 210 CVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQID-DY-AISYMSMMPSLKFIDISN 271 (480)
Q Consensus 210 ~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~~~~L~~L~l~~ 271 (480)
..|++|+.|.+.+|. +++.+...+...+++|++|++++|... +. .......+++++.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 766778888877776 677777777777778888888876542 22 222233566666655443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.5e-06 Score=69.09 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCcEEEccccCCCC---CCCCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEcc
Q 011674 99 PRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 174 (480)
Q Consensus 99 ~~L~~L~l~~n~l~~---l~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 174 (480)
.+...++|+.|.+.. +|.+++|.+|.+++|.|+.+.+.+. ..++|..|.+.+|.+..+...-....||.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 456667777776553 5567788899999999998888887 567788888888888766555555578888888888
Q ss_pred CCccCcc-----hhhccCCCCCeeeCcCC
Q 011674 175 NSSLSRF-----CFLTQMKALEHLDLSSS 198 (480)
Q Consensus 175 ~~~l~~~-----~~~~~~~~L~~L~l~~n 198 (480)
+|.+..- ..+..+|+|+.||+..-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 8877654 35567888888887764
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=2.7e-06 Score=70.89 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=72.6
Q ss_pred CCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEE
Q 011674 165 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 244 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 244 (480)
......+++++|.+...+.+..+++|.+|.+.+|.|+...+..-..+ ++|+.|.+.+|.+...+.-.-...||.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchhccCCccceee
Confidence 45677888999998888888889999999999998887655433333 78888888888776544333224577888888
Q ss_pred ccCCCCChHHH---HHhhcCCCccEEEccC
Q 011674 245 LSGTQIDDYAI---SYMSMMPSLKFIDISN 271 (480)
Q Consensus 245 l~~n~l~~~~~---~~~~~~~~L~~L~l~~ 271 (480)
+-+|.++...- ..+..+|+|+.||+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77776653211 1233556666666554
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.07 E-value=7e-06 Score=82.57 Aligned_cols=112 Identities=29% Similarity=0.402 Sum_probs=83.6
Q ss_pred cCCCceEEEccCCc-cCc--c-hhhccCCCCCeeeCcCC-C-CCC--hhHHHHHhhcCCCcEEEccCCC-CCcchHHHHh
Q 011674 164 ETSLLSFLDVSNSS-LSR--F-CFLTQMKALEHLDLSSS-M-IGD--DSVEMVACVGANLRNLNLSNTR-FSSAGVGILA 234 (480)
Q Consensus 164 ~~~~L~~L~l~~~~-l~~--~-~~~~~~~~L~~L~l~~n-~-l~~--~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 234 (480)
.++.|+.+.+..+. +.. . +....++.|+.|+++++ . +.. .....+...+++|+.++++.+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 47889999988774 443 3 56678899999999873 2 221 1223345555889999999987 8888888887
Q ss_pred cCCCCCcEEEccCCC-CChHHHHHhh-cCCCccEEEccCcccc
Q 011674 235 GHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIK 275 (480)
Q Consensus 235 ~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~~~l~ 275 (480)
..|++|+.|.+.+|. +++.....+. .+++|++|++++|...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 779999999988887 6766555554 7888999999988754
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=8e-06 Score=51.26 Aligned_cols=36 Identities=42% Similarity=0.497 Sum_probs=15.5
Q ss_pred CCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCC
Q 011674 52 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 88 (480)
Q Consensus 52 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 88 (480)
+|++|++++|.++.. +..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 344444444444432 223444444444444444444
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=7.5e-07 Score=69.35 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=19.4
Q ss_pred CCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHH
Q 011674 117 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA 159 (480)
Q Consensus 117 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 159 (480)
++.|+.|+++.|++...|..+..+.++..|+..++....++..
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 3344444444444444444444444444455444444444433
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=3.3e-06 Score=65.80 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=53.0
Q ss_pred cEEEcCCCcCCHHH--HHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 30 EKLWLSETGLTADG--IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 30 ~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
-.++|+.|++..+. +..+.....|+..+|++|.+....+..-.+.+.++.|++++|.+++ .|..+..++.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccc
Confidence 34455555443211 1222344445555555555544333333344455555555555553 33345555556666666
Q ss_pred ccCCCCCC----CCCCCCEEEcCCCcccchhccC
Q 011674 108 WTGVTKLP----NISSLECLNLSNCTIDSILEGN 137 (480)
Q Consensus 108 ~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~ 137 (480)
.|.+...+ .+.++-.|+..+|.+..++..+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 55555433 3455555566666555555443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=7.3e-05 Score=70.85 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCC-cCCchhhHhhcCCCCCcE
Q 011674 25 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSF 103 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~ 103 (480)
.++++++|++++|.++.. | . -..+|++|.+++|.-....|..+. ++|++|++++| .+.. .| ..|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-LP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-LP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-cc------cccce
Confidence 456666666666655542 2 1 122466666665543333333321 35666666655 3321 11 23455
Q ss_pred EEccccCCCCCCCC-CCCCEEEc
Q 011674 104 LNLAWTGVTKLPNI-SSLECLNL 125 (480)
Q Consensus 104 L~l~~n~l~~l~~~-~~L~~L~l 125 (480)
|++..+....++.+ ++|+.|.+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I 139 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSI 139 (426)
T ss_pred EEeCCCCCcccccCcchHhheec
Confidence 55554443333333 24455544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=5.4e-05 Score=71.74 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=24.0
Q ss_pred CCCCcEEEccccCCCCCCCCC-CCCEEEcCCC-cccchhccCCCCCCccEEEccCC
Q 011674 98 FPRLSFLNLAWTGVTKLPNIS-SLECLNLSNC-TIDSILEGNENKAPLAKISLAGT 151 (480)
Q Consensus 98 l~~L~~L~l~~n~l~~l~~~~-~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~ 151 (480)
+.+++.|+++.|.++.+|.++ +|++|.+++| .+..+|..+ ..+|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344555555555555444333 3555555543 233333322 234555555554
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3.3e-05 Score=48.43 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCCh
Q 011674 119 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 156 (480)
Q Consensus 119 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 156 (480)
+|++|++++|.++.+|+.+.++++|+.|++++|.+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666666566666666666666655543
No 65
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.61 E-value=6.1e-06 Score=80.98 Aligned_cols=234 Identities=23% Similarity=0.201 Sum_probs=116.8
Q ss_pred CCCccEEEccCCCCCChh---HHHhhhcCCC-ceEEEccCCccCcc------hhhccC-CCCCeeeCcCCCCCChhHHHH
Q 011674 140 KAPLAKISLAGTTFINER---EAFLYIETSL-LSFLDVSNSSLSRF------CFLTQM-KALEHLDLSSSMIGDDSVEMV 208 (480)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~~-L~~L~l~~~~l~~~------~~~~~~-~~L~~L~l~~n~l~~~~~~~~ 208 (480)
..++++|.+++|.++... ....+...+. +..+++.+|.+.+. +.+..+ +.++.++++.|.++......+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 455666666666554211 1112223333 55577777776543 344445 677888888888877665554
Q ss_pred Hhhc---CCCcEEEccCCCCCcchHHHHhcC---CCCCcEEEccCCCCChHHH-----HHhhcCCCccEEEccCcccccc
Q 011674 209 ACVG---ANLRNLNLSNTRFSSAGVGILAGH---LPNLEILSLSGTQIDDYAI-----SYMSMMPSLKFIDISNTDIKGF 277 (480)
Q Consensus 209 ~~~~---~~L~~L~L~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~~~l~~~ 277 (480)
+... ++++.+.++.|.+.+......... ...+.++.+.++......+ .....-..+....++++...+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE 362 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence 4332 577788888888877665544322 2345555555433222111 1111111222223333332211
Q ss_pred ccccccchhhhhcHHHhhcCC-CCCEEeCCCCCccccc----cccccccccCceeecCCCCCChhhHHhh-----cCCCC
Q 011674 278 IQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSLHQL-----SSLSK 347 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~ 347 (480)
... .......+.. .+..+++..+.+.+.. ...+...+.++.++++.|...+..+..+ .+. .
T Consensus 363 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~ 433 (478)
T KOG4308|consen 363 GLA--------LLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-S 433 (478)
T ss_pred HHH--------HHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-c
Confidence 000 0001122222 2455555555444322 2233455778888888876554433222 223 7
Q ss_pred CCEEEecCCccCcccccCC----CCCCCCcEEEcCCCcc
Q 011674 348 LTNLSIRDAVLTNSGLGSF----KPPRSLKLLDLHGGWL 382 (480)
Q Consensus 348 L~~L~l~~n~i~~~~~~~~----~~~~~L~~l~l~~n~~ 382 (480)
++.++++.|.++..+.... ..-+....+.+..|.+
T Consensus 434 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (478)
T KOG4308|consen 434 LKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVI 472 (478)
T ss_pred chhhhhccChhhhcchHHHHHHHhcCCCcceeecccCcc
Confidence 8888888887766544322 2225666666666654
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=9.3e-05 Score=59.58 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=19.8
Q ss_pred HhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEec
Q 011674 293 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 354 (480)
Q Consensus 293 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 354 (480)
+|.++++++.+.+.. .+.......+..+++|+.+++..+ +.......+..+ .|+.+.+.
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 344444444444433 222223333444444444444332 333333334443 44444444
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.56 E-value=6.1e-06 Score=81.01 Aligned_cols=298 Identities=27% Similarity=0.303 Sum_probs=174.3
Q ss_pred CCEEEccCCcCCchhhH----hhcCCCCCcEEEccccCCCC---------CCCC-CCCCEEEcCCCccc-----chhccC
Q 011674 77 LEYLDLWGSQVSNRGAA----VLKMFPRLSFLNLAWTGVTK---------LPNI-SSLECLNLSNCTID-----SILEGN 137 (480)
Q Consensus 77 L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~~n~l~~---------l~~~-~~L~~L~l~~~~l~-----~~~~~~ 137 (480)
+.++.+.+|.+.+.... ++...+.|..|++++|.+.+ +... ..+++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66666777666654433 33455667777777776663 1222 45666666666655 355566
Q ss_pred CCCCCccEEEccCCCCCChh-----HHHh--hhcCCCceEEEccCCccCcc------hhhccCCC-CCeeeCcCCCCCCh
Q 011674 138 ENKAPLAKISLAGTTFINER-----EAFL--YIETSLLSFLDVSNSSLSRF------CFLTQMKA-LEHLDLSSSMIGDD 203 (480)
Q Consensus 138 ~~~~~L~~L~l~~~~~~~~~-----~~~~--~~~~~~L~~L~l~~~~l~~~------~~~~~~~~-L~~L~l~~n~l~~~ 203 (480)
....+++.++++.|.+.... .... +....+++.|++.+|.++.. ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 67778888888888764211 1111 12356788888888887654 24444555 77788888888877
Q ss_pred hHHHHHhhc----CCCcEEEccCCCCCcchHHHHh---cCCCCCcEEEccCCCCChHHHHHh----hcCCCccEEEccCc
Q 011674 204 SVEMVACVG----ANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYM----SMMPSLKFIDISNT 272 (480)
Q Consensus 204 ~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~~ 272 (480)
+.......+ ..+++++++.|.+++.+..... ..++.++++.+..|.+.+...... .....+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 666655544 3457888888888876655443 345678888888888876543332 23344555555544
Q ss_pred cccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc----cccccc-ccCceeecCCCCCChhh----HHhhc
Q 011674 273 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPLSTF-KELIHLSLRNASLTDVS----LHQLS 343 (480)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~~-~~L~~L~L~~n~l~~~~----~~~l~ 343 (480)
......+. +.... ....-..+.....+++...+... .+.... +.+..+++..+.+.+.. +..+.
T Consensus 329 ~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 401 (478)
T KOG4308|consen 329 GKGTRGGT-----SVLAE--ADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLA 401 (478)
T ss_pred CccchhHH-----HHHHH--HHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhh
Confidence 43222111 00010 11111222233444444433221 112222 34777777777655432 23456
Q ss_pred CCCCCCEEEecCCccCcccccCC-----CCCCCCcEEEcCCCcc
Q 011674 344 SLSKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHGGWL 382 (480)
Q Consensus 344 ~l~~L~~L~l~~n~i~~~~~~~~-----~~~~~L~~l~l~~n~~ 382 (480)
..+.++.++++.|...+.....+ .+. .++.++++.|++
T Consensus 402 ~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 402 SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred hcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 68899999999998766544322 223 899999999986
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.48 E-value=3.5e-05 Score=67.23 Aligned_cols=106 Identities=26% Similarity=0.377 Sum_probs=65.3
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCc--cccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT--DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 313 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 313 (480)
.+..|+.|.+.+..++.. ..+..+++|+.|.++.| .+.+-... ....+++|+++++++|++..+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v------------l~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV------------LAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee------------hhhhCCceeEEeecCCccccc
Confidence 345666666666666543 34567778888888887 33333222 244558888888888877642
Q ss_pred -ccccccccccCceeecCCCCC---ChhhHHhhcCCCCCCEEEecC
Q 011674 314 -TLFPLSTFKELIHLSLRNASL---TDVSLHQLSSLSKLTNLSIRD 355 (480)
Q Consensus 314 -~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~l~~ 355 (480)
....+..+++|..|++.+|.. .+-....|.-+++|++||-.+
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 122345567777888887743 333344566677777776544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=1.1e-05 Score=70.60 Aligned_cols=79 Identities=27% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhH-hhcCCCCCcEEE
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA-VLKMFPRLSFLN 105 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~ 105 (480)
.+.+.|++.+|.++++. ...+|+.|+.|.|+-|.|+.. ..|..|++|+.|.|..|.|.+...- -+.++|+|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34444555555554432 233555555555555555443 3344555555555555555443221 234555555555
Q ss_pred cccc
Q 011674 106 LAWT 109 (480)
Q Consensus 106 l~~n 109 (480)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5444
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=5.6e-05 Score=65.96 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=34.9
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCC--cCCchhhHhhcCCCCCcEEEccccCCCCCC------CCCCCCE
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS--QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLEC 122 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~------~~~~L~~ 122 (480)
..|+.|++.+..++.. ..|..+++|++|.++.| ++.+-......++|+|+++++++|++..+. .+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3344444444433332 23444455555555555 333322222333455555555555544322 3444555
Q ss_pred EEcCCCccc
Q 011674 123 LNLSNCTID 131 (480)
Q Consensus 123 L~l~~~~l~ 131 (480)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 555555443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.12 E-value=0.0011 Score=53.22 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=67.2
Q ss_pred HHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCC
Q 011674 256 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 335 (480)
Q Consensus 256 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 335 (480)
..|..+++|+.+.+.. .+...... +|.++++|+.+.+.++ +..+....+..+++++.+.+.. .+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~------------~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN------------AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT------------TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh------------hccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 3566777888888874 45544444 6888888999999885 7776677788888899999976 555
Q ss_pred hhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCC
Q 011674 336 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 336 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n 380 (480)
......+..+++|+.+++..+ +.......+..+ +++.+.+..+
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence 555567788999999999775 666666778777 8888888753
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00012 Score=64.38 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=60.7
Q ss_pred CCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChh-HHHHHhhcCCCcEEE
Q 011674 141 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLN 219 (480)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~ 219 (480)
.+.+.|+.-+|.+..+.. ..+++.|++|.|+-|.|+.+..+..|++|++|++..|.|.+.. ...+..+ ++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHh
Confidence 445566666666655443 2357777777777777777777777777777777777776543 2333344 6777777
Q ss_pred ccCCCCCcchHH----HHhcCCCCCcEEE
Q 011674 220 LSNTRFSSAGVG----ILAGHLPNLEILS 244 (480)
Q Consensus 220 L~~n~l~~~~~~----~~~~~l~~L~~L~ 244 (480)
|..|.-.+.... .....+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 766644332221 2224466666664
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00048 Score=57.85 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCCEEeCCCCCccccccccccccccCceeecCCC-CCChhhHHhhcC-CCCCCEEEecCC-ccCcccccCCCCCCCCcEE
Q 011674 299 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSS-LSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLL 375 (480)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~-l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~l 375 (480)
.++.++-+++.|..++.+-+..+++++.|.+.+| .+.+...+.+++ .++|+.|+|++| +||+.+...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666666666666666677777777776 444444444433 466777777766 3666666666666777777
Q ss_pred EcCCCcccCHHH--HHHHHHhCCceeee
Q 011674 376 DLHGGWLLTEDA--ILQFCKMHPRIEVW 401 (480)
Q Consensus 376 ~l~~n~~~~~~~--~~~~~~~~~~l~~~ 401 (480)
.+.+=+.+.... ...+...+|..++.
T Consensus 182 ~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 182 HLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HhcCchhhhchHHHHHHHHHhCccccee
Confidence 776655433222 22334556655554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.0029 Score=53.28 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=42.5
Q ss_pred CCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCC-CCCcchHHHHhcCCCCCcEEEccCC-CCChHHHHHhhcCCCccEE
Q 011674 190 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFI 267 (480)
Q Consensus 190 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 267 (480)
++.++-++..|...+.+.+..+ +.++.|.+.+| .+.+....-+.+-.++|+.|++++| +|++-....+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555555555555555555555 55555555555 3334444444334455666666654 3555555555555555555
Q ss_pred EccC
Q 011674 268 DISN 271 (480)
Q Consensus 268 ~l~~ 271 (480)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.35 E-value=0.02 Score=31.09 Aligned_cols=25 Identities=44% Similarity=0.763 Sum_probs=21.1
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhC
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLS 25 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~ 25 (480)
|++|++|+|++|..+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6899999999998899988877653
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.016 Score=30.08 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=13.9
Q ss_pred CCCEEEcCCCcccchhccCC
Q 011674 119 SLECLNLSNCTIDSILEGNE 138 (480)
Q Consensus 119 ~L~~L~l~~~~l~~~~~~~~ 138 (480)
+|++|++++|.++.+|+++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 46777777777777776643
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.75 E-value=0.041 Score=26.39 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=4.8
Q ss_pred CCCEEEcCCCcccc
Q 011674 119 SLECLNLSNCTIDS 132 (480)
Q Consensus 119 ~L~~L~l~~~~l~~ 132 (480)
+|+.|++++|.++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.73 E-value=0.096 Score=28.37 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.9
Q ss_pred CCCCcEEEcCCCcccCHHHHHHHHH
Q 011674 369 PRSLKLLDLHGGWLLTEDAILQFCK 393 (480)
Q Consensus 369 ~~~L~~l~l~~n~~~~~~~~~~~~~ 393 (480)
|++|++|++++|+.+++.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4789999999999999998877653
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.09 E-value=0.042 Score=28.44 Aligned_cols=12 Identities=58% Similarity=1.007 Sum_probs=6.6
Q ss_pred CCEEEccCCcCC
Q 011674 77 LEYLDLWGSQVS 88 (480)
Q Consensus 77 L~~L~l~~~~i~ 88 (480)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.61 E-value=0.077 Score=28.08 Aligned_cols=12 Identities=50% Similarity=0.512 Sum_probs=3.8
Q ss_pred CcEEEcCCCcCC
Q 011674 29 LEKLWLSETGLT 40 (480)
Q Consensus 29 L~~L~l~~~~~~ 40 (480)
|++|+|++|+++
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 333333333333
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.74 E-value=0.094 Score=27.72 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.8
Q ss_pred CCCCeeeCcCCCCCChhHHHH
Q 011674 188 KALEHLDLSSSMIGDDSVEMV 208 (480)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~~~~ 208 (480)
++|++|++++|.+++.+...+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.62 E-value=0.19 Score=27.13 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=12.3
Q ss_pred CCCCEEEcCCCcccchhccC
Q 011674 118 SSLECLNLSNCTIDSILEGN 137 (480)
Q Consensus 118 ~~L~~L~l~~~~l~~~~~~~ 137 (480)
++|++|++++|.+..+|++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.62 E-value=0.19 Score=27.13 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=12.3
Q ss_pred CCCCEEEcCCCcccchhccC
Q 011674 118 SSLECLNLSNCTIDSILEGN 137 (480)
Q Consensus 118 ~~L~~L~l~~~~l~~~~~~~ 137 (480)
++|++|++++|.+..+|++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666554
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.88 E-value=0.33 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=12.5
Q ss_pred CCCCEEEccCCcCCchhhHhh
Q 011674 75 TKLEYLDLWGSQVSNRGAAVL 95 (480)
Q Consensus 75 ~~L~~L~l~~~~i~~~~~~~l 95 (480)
++|++|++++|++....+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.88 E-value=0.33 Score=26.15 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=12.5
Q ss_pred CCCCEEEccCCcCCchhhHhh
Q 011674 75 TKLEYLDLWGSQVSNRGAAVL 95 (480)
Q Consensus 75 ~~L~~L~l~~~~i~~~~~~~l 95 (480)
++|++|++++|++....+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.76 E-value=1.2 Score=42.94 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=44.0
Q ss_pred CceeecCCCCCChhh---HHhhcCCCCCCEEEecCCccCccccc----CCCCCCCCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 324 LIHLSLRNASLTDVS---LHQLSSLSKLTNLSIRDAVLTNSGLG----SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 324 L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
+..+.++.|.+.... ...+..-+.+.+|++++|...+.+.. ....-.+++.+..+.|. +.+..+.......|
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~-p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL-PEDPGLGPRNEERP 493 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC-ccccccchhhhhcc
Confidence 666777777654321 22345567888999999887664332 22333678888887776 46555555544444
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.95 E-value=6.9 Score=38.07 Aligned_cols=174 Identities=16% Similarity=0.019 Sum_probs=82.8
Q ss_pred CCCCcEEEcCCCcCCHHHHHHHcC--CCCCCEEEcCCCCCCHHHHhhcc---CCCCCCEEEccCCcCCchhhHhhcCC--
Q 011674 26 ISTLEKLWLSETGLTADGIALLSS--LQNLSVLDLGGLPVTDLVLRSLQ---VLTKLEYLDLWGSQVSNRGAAVLKMF-- 98 (480)
Q Consensus 26 ~~~L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~~~~~~l~~l-- 98 (480)
-+.+++++++.|.+.+..+-.+.. ++ +.++.|..+......+. .=..+.+++++.|...+..+..+..+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 367788888888776655533321 22 55566655443222221 11256677777776665555443222
Q ss_pred -CCCcEEEccccCCCC--------CCCCCCCCEEEcCCCccc-----chhccCC----CCCCccEEEccCCCCCCh-hHH
Q 011674 99 -PRLSFLNLAWTGVTK--------LPNISSLECLNLSNCTID-----SILEGNE----NKAPLAKISLAGTTFINE-REA 159 (480)
Q Consensus 99 -~~L~~L~l~~n~l~~--------l~~~~~L~~L~l~~~~l~-----~~~~~~~----~~~~L~~L~l~~~~~~~~-~~~ 159 (480)
..++.++.+...+.. .+.-.++...+++.|... +.+.... .-.++ +|++..+..... +..
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks 318 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKS 318 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhh
Confidence 235555555544331 112235555566555432 2222222 23444 566655544321 111
Q ss_pred Hhhh----cCCCceEEEccCCccCcchhhc---cCCCCCeeeCcCCCCCChh
Q 011674 160 FLYI----ETSLLSFLDVSNSSLSRFCFLT---QMKALEHLDLSSSMIGDDS 204 (480)
Q Consensus 160 ~~~~----~~~~L~~L~l~~~~l~~~~~~~---~~~~L~~L~l~~n~l~~~~ 204 (480)
.... ..+.=-++++..|......... +-..+++|....|...+.+
T Consensus 319 ~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 319 MLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEG 370 (553)
T ss_pred hhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccc
Confidence 1100 1111223555555554442222 2245888888888766543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.64 E-value=1.1 Score=24.72 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=11.8
Q ss_pred CCCcEEecCCCCCCChhhHHhh
Q 011674 2 TCLKELDLSRCVKVTDAGMKHL 23 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l 23 (480)
++|++|+|++| .+++.+...+
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARAL 22 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHH
Confidence 45666666666 4555555444
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=84.47 E-value=0.48 Score=55.51 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=39.4
Q ss_pred EecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCCc
Q 011674 352 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 397 (480)
Q Consensus 352 ~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 397 (480)
||++|+|+......|..+++|+.|+|++||+.|+|.+.||.++...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 5788888888778888889999999999999999999998776543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.61 E-value=1.5 Score=24.17 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=13.9
Q ss_pred CCCCeeeCcCCCCCChhHHHHHh
Q 011674 188 KALEHLDLSSSMIGDDSVEMVAC 210 (480)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~~~~~~ 210 (480)
++|++|++++|.+...+...++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45666666666666655555543
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.45 E-value=0.032 Score=48.22 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=46.7
Q ss_pred hhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChh
Q 011674 258 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 337 (480)
Q Consensus 258 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 337 (480)
+......+.||++.|.+-.... .|.-++.+.+|+++.|.+.. .|..+.+...++.+++..|..+..
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-------------n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-------------NFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQ 103 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-------------chHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhC
Confidence 3344455555555555433211 23444455566666665543 345555555666666666655443
Q ss_pred hHHhhcCCCCCCEEEecCCccCc
Q 011674 338 SLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 338 ~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
|..+...|.+++++..++.+..
T Consensus 104 -p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 104 -PKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred -CccccccCCcchhhhccCcchH
Confidence 4455666666666666665443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.09 E-value=3 Score=22.54 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.3
Q ss_pred CcEEEccccCC
Q 011674 101 LSFLNLAWTGV 111 (480)
Q Consensus 101 L~~L~l~~n~l 111 (480)
|+.|++++|.+
T Consensus 4 L~~L~L~~NkI 14 (26)
T smart00365 4 LEELDLSQNKI 14 (26)
T ss_pred cCEEECCCCcc
Confidence 33333333333
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.43 E-value=2 Score=23.19 Aligned_cols=18 Identities=44% Similarity=0.514 Sum_probs=11.4
Q ss_pred CCCCEEEcCCCcccchhc
Q 011674 118 SSLECLNLSNCTIDSILE 135 (480)
Q Consensus 118 ~~L~~L~l~~~~l~~~~~ 135 (480)
++|++|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666666666654
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.28 E-value=0.049 Score=47.15 Aligned_cols=84 Identities=18% Similarity=0.012 Sum_probs=34.8
Q ss_pred hhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCc
Q 011674 23 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 102 (480)
Q Consensus 23 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 102 (480)
+..+...+.||++.|.+... -..|..++.|..|+++.|.+.. .|..+.+...++.+++..|+.+ ..|..++..++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 33444444555544443221 1223334444444444443322 2344444444444444444433 2344444444444
Q ss_pred EEEcccc
Q 011674 103 FLNLAWT 109 (480)
Q Consensus 103 ~L~l~~n 109 (480)
++++..+
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 4444433
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.24 E-value=3.6 Score=40.73 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=16.8
Q ss_pred cCCCceEEEccCCccCcchhhc----cCCCCCeeeCcCC
Q 011674 164 ETSLLSFLDVSNSSLSRFCFLT----QMKALEHLDLSSS 198 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~~~~~----~~~~L~~L~l~~n 198 (480)
+.+.+..+.+++|++..+..+. ..|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555555554443222 2345555555555
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.54 E-value=5.8 Score=39.37 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=46.3
Q ss_pred ccccCceeecCCCCCChhhH--HhhcCCCCCCEEEecCC--ccCcc-cccCCCCCCCCcEEEcCCCcccCHH-----HHH
Q 011674 320 TFKELIHLSLRNASLTDVSL--HQLSSLSKLTNLSIRDA--VLTNS-GLGSFKPPRSLKLLDLHGGWLLTED-----AIL 389 (480)
Q Consensus 320 ~~~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n--~i~~~-~~~~~~~~~~L~~l~l~~n~~~~~~-----~~~ 389 (480)
+.+.+..+.|++|++..+.. ..-...|+|+.|+|++| .+... ....+.. ..|++|.+.|||+.+.- -+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence 44666667777776544321 12244678888888888 33221 1122222 55889999999874432 244
Q ss_pred HHHHhCCceeee
Q 011674 390 QFCKMHPRIEVW 401 (480)
Q Consensus 390 ~~~~~~~~l~~~ 401 (480)
.+.+.+|.+...
T Consensus 295 ~i~~~FPKL~~L 306 (585)
T KOG3763|consen 295 AIRELFPKLLRL 306 (585)
T ss_pred HHHHhcchheee
Confidence 455677766544
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=26.90 E-value=52 Score=17.65 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=8.9
Q ss_pred CcEEEcCCCcccCHHHHHHH
Q 011674 372 LKLLDLHGGWLLTEDAILQF 391 (480)
Q Consensus 372 L~~l~l~~n~~~~~~~~~~~ 391 (480)
|++|.|.+..+..+..+..+
T Consensus 2 LKtL~L~~v~f~~~~~l~~L 21 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERL 21 (26)
T ss_pred CeEEEeeEEEECChhHHHHh
Confidence 44555555444333334333
No 98
>PRK09718 hypothetical protein; Validated
Probab=22.88 E-value=1e+02 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=17.3
Q ss_pred ceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 325 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 325 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
+...+.+|.+.+.. | .-..|+..|++.|.+.+.
T Consensus 211 Kka~F~~cDLt~Ad---F-~qT~LkgVDFSdC~Le~~ 243 (512)
T PRK09718 211 KEISFIKSNLTAVM---F-DHVRISTGNFKDCITEQL 243 (512)
T ss_pred CCCEEeCCCCCCCC---c-CCCcCCCcccccccccce
Confidence 45555555554432 2 124477777777766543
Done!