Query 011674
Match_columns 480
No_of_seqs 286 out of 3672
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 2.6E-42 8.7E-47 355.2 22.8 382 1-395 56-572 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-41 3.8E-46 350.4 18.4 241 139-396 305-571 (606)
3 3t6q_A CD180 antigen; protein- 100.0 8.3E-41 2.8E-45 343.9 23.0 379 2-382 33-512 (606)
4 3rgz_A Protein brassinosteroid 100.0 1.6E-41 5.4E-46 357.3 16.4 353 27-382 294-716 (768)
5 2z63_A TOLL-like receptor 4, v 100.0 8.9E-41 3E-45 341.3 19.2 209 165-388 324-536 (570)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-40 1.3E-44 339.1 21.1 359 2-381 32-508 (606)
7 3rgz_A Protein brassinosteroid 100.0 2.9E-40 1E-44 347.6 19.7 364 2-382 151-550 (768)
8 3v47_A TOLL-like receptor 5B a 100.0 2.7E-39 9.1E-44 321.1 23.9 365 6-387 14-412 (455)
9 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-39 2E-43 326.3 26.0 369 2-388 26-515 (549)
10 4eco_A Uncharacterized protein 100.0 7.5E-40 2.6E-44 336.9 15.2 343 20-384 199-601 (636)
11 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-38 4.3E-43 321.5 20.7 368 2-391 21-489 (520)
12 4eco_A Uncharacterized protein 100.0 1.7E-39 5.7E-44 334.3 13.2 359 3-382 82-578 (636)
13 1o6v_A Internalin A; bacterial 100.0 8.8E-37 3E-41 303.3 30.0 341 2-384 46-389 (466)
14 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-38 3.3E-42 325.4 22.8 154 2-156 25-186 (680)
15 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-37 4.3E-42 324.5 23.6 109 2-111 49-157 (680)
16 4g8a_A TOLL-like receptor 4; l 100.0 4.9E-38 1.7E-42 325.2 20.3 380 2-395 52-592 (635)
17 2z63_A TOLL-like receptor 4, v 100.0 4.2E-38 1.4E-42 321.6 17.9 365 2-382 28-506 (570)
18 4ecn_A Leucine-rich repeat pro 100.0 9.8E-38 3.4E-42 326.6 20.4 328 44-382 441-818 (876)
19 4ecn_A Leucine-rich repeat pro 100.0 6.3E-38 2.2E-42 328.0 17.5 344 1-364 447-845 (876)
20 3v47_A TOLL-like receptor 5B a 100.0 2.8E-37 9.4E-42 306.6 20.9 346 2-361 30-410 (455)
21 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-38 1.1E-42 335.4 10.2 271 2-275 24-375 (844)
22 1z7x_W Ribonuclease inhibitor; 100.0 5.2E-36 1.8E-40 297.9 24.3 391 2-401 3-460 (461)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-37 1.5E-41 312.8 16.9 369 2-393 52-520 (562)
24 1o6v_A Internalin A; bacterial 100.0 5.7E-35 2E-39 290.3 30.1 322 1-362 67-391 (466)
25 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-37 2.5E-41 325.0 11.8 381 5-393 7-570 (844)
26 4fmz_A Internalin; leucine ric 100.0 6.3E-34 2.2E-38 272.0 29.5 304 25-382 42-345 (347)
27 2id5_A Lingo-1, leucine rich r 100.0 2.1E-35 7.3E-40 294.6 19.7 326 30-396 14-346 (477)
28 4fmz_A Internalin; leucine ric 100.0 3.5E-34 1.2E-38 273.8 27.3 300 1-359 43-346 (347)
29 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-34 7.8E-39 292.5 25.0 358 2-383 5-464 (549)
30 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-35 2.5E-39 294.0 19.4 336 1-360 44-482 (520)
31 3o6n_A APL1; leucine-rich repe 100.0 4.5E-34 1.5E-38 277.4 22.6 311 25-389 43-358 (390)
32 2id5_A Lingo-1, leucine rich r 100.0 8.1E-34 2.8E-38 283.2 17.8 313 5-336 14-334 (477)
33 3oja_B Anopheles plasmodium-re 100.0 3.9E-33 1.3E-37 285.3 23.2 316 26-391 50-366 (597)
34 1z7x_W Ribonuclease inhibitor; 100.0 6.2E-33 2.1E-37 275.8 22.8 361 26-396 2-423 (461)
35 3o6n_A APL1; leucine-rich repe 100.0 3.1E-33 1.1E-37 271.5 19.3 307 1-362 44-355 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-33 6.1E-38 286.3 15.4 335 1-360 75-511 (562)
37 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-32 1.2E-36 268.1 23.1 307 22-360 37-353 (457)
38 3ogk_B Coronatine-insensitive 100.0 8.3E-33 2.8E-37 283.6 19.4 391 1-402 72-544 (592)
39 3oja_B Anopheles plasmodium-re 100.0 2.3E-32 7.7E-37 279.7 19.4 305 1-360 50-359 (597)
40 2p1m_B Transport inhibitor res 100.0 1.4E-31 4.8E-36 274.6 23.6 390 1-402 65-537 (594)
41 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-32 1.9E-36 279.9 17.5 344 1-360 75-581 (635)
42 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-31 1.2E-35 261.0 22.0 301 45-384 36-353 (457)
43 1jl5_A Outer protein YOPM; leu 100.0 4.2E-32 1.4E-36 267.3 14.8 329 2-382 11-369 (454)
44 1jl5_A Outer protein YOPM; leu 100.0 2.6E-30 8.9E-35 254.6 24.8 321 3-383 72-409 (454)
45 3ogk_B Coronatine-insensitive 100.0 5.6E-30 1.9E-34 262.6 23.4 343 25-380 162-548 (592)
46 1xku_A Decorin; proteoglycan, 100.0 2.5E-29 8.6E-34 238.2 19.3 286 28-380 32-329 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.5E-33 232.7 21.1 266 52-383 32-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 2E-29 6.8E-34 239.1 14.5 287 28-357 34-331 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 7.9E-29 2.7E-33 235.0 16.5 281 52-381 34-331 (332)
50 2p1m_B Transport inhibitor res 100.0 1E-28 3.4E-33 253.4 16.1 366 1-381 104-542 (594)
51 2z66_A Variable lymphocyte rec 99.9 8.8E-28 3E-32 225.1 12.9 255 102-395 10-273 (306)
52 3zyj_A Leucine-rich repeat-con 99.9 2.2E-27 7.6E-32 233.8 15.6 257 120-395 45-304 (440)
53 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.2E-32 226.7 15.1 283 73-394 29-326 (353)
54 3zyi_A Leucine-rich repeat-con 99.9 4.1E-27 1.4E-31 232.8 16.5 256 121-395 57-315 (452)
55 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-28 1.6E-32 227.8 8.0 261 28-356 11-272 (317)
56 2z80_A TOLL-like receptor 2, v 99.9 2.1E-26 7.3E-31 220.2 18.0 277 24-337 28-316 (353)
57 1ogq_A PGIP-2, polygalacturona 99.9 6.9E-28 2.4E-32 226.1 6.6 242 51-332 50-301 (313)
58 1ogq_A PGIP-2, polygalacturona 99.9 6.7E-28 2.3E-32 226.2 6.4 249 118-385 50-306 (313)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-27 7.2E-32 223.4 9.4 257 4-272 12-272 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.9E-31 215.2 11.4 220 166-399 32-254 (285)
61 3g06_A SSPH2 (leucine-rich rep 99.9 3E-25 1E-29 225.1 20.2 266 27-344 40-306 (622)
62 3g06_A SSPH2 (leucine-rich rep 99.9 5.1E-25 1.7E-29 223.4 21.0 256 51-382 40-296 (622)
63 2z66_A Variable lymphocyte rec 99.9 6.4E-26 2.2E-30 212.4 13.1 241 77-335 9-261 (306)
64 3zyj_A Leucine-rich repeat-con 99.9 9.6E-26 3.3E-30 222.1 14.1 243 28-275 44-292 (440)
65 3zyi_A Leucine-rich repeat-con 99.9 1E-25 3.4E-30 222.8 14.0 242 28-274 55-302 (452)
66 3oja_A Leucine-rich immune mol 99.9 1.2E-25 4E-30 223.5 9.4 236 51-354 34-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-24 7.8E-29 199.7 15.1 204 142-360 33-239 (285)
68 4fcg_A Uncharacterized protein 99.9 9.7E-25 3.3E-29 205.9 11.9 230 119-381 82-312 (328)
69 3oja_A Leucine-rich immune mol 99.9 4.8E-25 1.6E-29 219.1 8.7 235 25-270 32-270 (487)
70 4fcg_A Uncharacterized protein 99.9 2.7E-24 9.4E-29 202.8 11.8 202 165-384 80-291 (328)
71 1wwl_A Monocyte differentiatio 99.9 8.3E-25 2.8E-29 205.2 4.9 247 118-383 43-309 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 6.5E-24 2.2E-28 195.6 10.7 211 167-392 29-247 (276)
73 2o6q_A Variable lymphocyte rec 99.9 2E-23 7E-28 191.5 13.4 206 167-387 17-222 (270)
74 1wwl_A Monocyte differentiatio 99.9 3.4E-25 1.2E-29 207.9 1.0 248 70-361 38-311 (312)
75 1p9a_G Platelet glycoprotein I 99.9 6.4E-23 2.2E-27 189.8 14.0 212 164-394 8-219 (290)
76 2ca6_A RAN GTPase-activating p 99.9 1.1E-22 3.6E-27 196.9 15.1 251 21-271 26-339 (386)
77 3goz_A Leucine-rich repeat-con 99.9 1.9E-22 6.4E-27 193.3 16.3 65 32-96 3-72 (362)
78 2ast_B S-phase kinase-associat 99.9 4.9E-22 1.7E-26 188.6 18.9 254 76-367 48-314 (336)
79 3goz_A Leucine-rich repeat-con 99.9 1.7E-22 5.7E-27 193.6 14.9 229 6-249 2-264 (362)
80 2ca6_A RAN GTPase-activating p 99.9 1E-22 3.5E-27 197.1 13.4 256 132-396 23-330 (386)
81 2ast_B S-phase kinase-associat 99.9 2.1E-21 7E-26 184.3 19.4 220 166-401 70-301 (336)
82 2z62_A TOLL-like receptor 4, v 99.9 2.5E-22 8.5E-27 185.0 12.3 217 126-360 15-238 (276)
83 2o6q_A Variable lymphocyte rec 99.9 6.3E-22 2.2E-26 181.6 12.7 203 119-360 17-219 (270)
84 3rfs_A Internalin B, repeat mo 99.9 4.4E-22 1.5E-26 182.7 11.5 195 165-382 40-234 (272)
85 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.5E-26 182.2 15.4 194 23-229 37-233 (308)
86 3rfs_A Internalin B, repeat mo 99.9 2E-21 6.8E-26 178.4 13.5 203 166-386 19-221 (272)
87 1h6u_A Internalin H; cell adhe 99.9 9E-21 3.1E-25 177.1 16.4 189 166-382 41-229 (308)
88 3m19_A Variable lymphocyte rec 99.9 3.5E-21 1.2E-25 174.6 12.6 189 189-394 15-204 (251)
89 4glp_A Monocyte differentiatio 99.8 9.6E-22 3.3E-26 184.2 8.0 221 3-228 65-309 (310)
90 1p9a_G Platelet glycoprotein I 99.8 7.3E-21 2.5E-25 176.0 13.0 202 116-360 8-209 (290)
91 4glp_A Monocyte differentiatio 99.8 1.1E-21 3.9E-26 183.7 6.7 221 25-252 62-308 (310)
92 2xwt_C Thyrotropin receptor; s 99.8 3.7E-21 1.3E-25 173.1 7.6 191 27-223 31-236 (239)
93 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.2E-25 169.7 7.9 195 167-381 32-237 (239)
94 3m19_A Variable lymphocyte rec 99.8 7.1E-20 2.4E-24 165.9 11.8 181 166-361 14-194 (251)
95 2v9t_B SLIT homolog 2 protein 99.8 2.3E-19 8E-24 158.8 12.0 164 216-395 14-177 (220)
96 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5E-23 160.7 15.4 174 164-363 44-217 (291)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-19 1.7E-23 156.7 11.7 166 215-396 13-179 (220)
98 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 8E-23 159.3 14.8 189 167-383 25-213 (291)
99 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.2E-24 171.8 7.1 185 191-391 21-210 (361)
100 1m9s_A Internalin B; cell inva 99.8 6.7E-18 2.3E-22 171.1 14.7 176 164-365 41-216 (605)
101 4ezg_A Putative uncharacterize 99.7 3.4E-18 1.2E-22 148.7 10.6 146 26-179 43-194 (197)
102 1m9s_A Internalin B; cell inva 99.7 3.7E-18 1.3E-22 172.9 11.4 192 165-384 20-211 (605)
103 3cvr_A Invasion plasmid antige 99.7 1.4E-17 4.7E-22 166.9 15.3 182 28-232 60-249 (571)
104 3e6j_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 148.8 12.8 158 213-387 19-176 (229)
105 4ay9_X Follicle-stimulating ho 99.7 2.1E-18 7.2E-23 164.2 7.3 236 103-380 13-256 (350)
106 2o6s_A Variable lymphocyte rec 99.7 4.8E-18 1.6E-22 149.2 8.9 178 170-369 11-188 (208)
107 3sb4_A Hypothetical leucine ri 99.7 1.7E-18 5.9E-23 163.4 6.5 282 3-352 26-327 (329)
108 3cvr_A Invasion plasmid antige 99.7 2.5E-17 8.6E-22 165.0 14.7 186 51-260 59-252 (571)
109 4ay9_X Follicle-stimulating ho 99.7 2.8E-18 9.6E-23 163.4 5.4 231 5-248 12-256 (350)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 148.2 8.5 154 191-360 14-167 (220)
111 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.3E-22 156.8 10.3 218 140-377 100-328 (329)
112 2o6s_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 141.2 13.3 154 216-385 10-163 (208)
113 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 152.3 7.5 169 166-361 19-187 (263)
114 4ezg_A Putative uncharacterize 99.7 6.4E-17 2.2E-21 140.6 11.6 153 186-360 42-195 (197)
115 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.7E-22 157.7 8.0 174 144-335 21-202 (361)
116 1xeu_A Internalin C; cellular 99.7 5.3E-17 1.8E-21 147.8 9.8 170 186-384 17-186 (263)
117 2v9t_B SLIT homolog 2 protein 99.7 3.6E-17 1.2E-21 144.7 8.3 153 191-360 14-166 (220)
118 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 8E-21 140.4 10.2 127 27-153 40-171 (229)
119 1dce_A Protein (RAB geranylger 99.6 3.1E-19 1.1E-23 179.7 -11.7 187 24-227 346-547 (567)
120 1w8a_A SLIT protein; signaling 99.6 6.5E-16 2.2E-20 133.5 9.2 141 241-395 11-151 (192)
121 2wfh_A SLIT homolog 2 protein 99.6 1E-15 3.5E-20 132.2 10.3 140 241-396 13-152 (193)
122 4fs7_A Uncharacterized protein 99.6 1E-15 3.4E-20 148.2 9.9 309 40-380 60-376 (394)
123 2ell_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 131.1 5.3 131 25-157 22-163 (168)
124 2o6r_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 124.5 11.9 140 240-394 9-149 (177)
125 1dce_A Protein (RAB geranylger 99.6 6.4E-17 2.2E-21 162.9 -2.0 106 239-361 442-548 (567)
126 3un9_A NLR family member X1; l 99.6 3.8E-15 1.3E-19 142.1 8.9 188 187-382 71-282 (372)
127 4fdw_A Leucine rich hypothetic 99.6 2.4E-14 8.3E-19 137.9 14.1 260 50-358 112-382 (401)
128 4fdw_A Leucine rich hypothetic 99.6 1.2E-14 4E-19 140.1 11.2 260 4-311 115-383 (401)
129 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 125.5 7.1 133 213-360 24-161 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.3E-20 124.3 5.2 85 294-378 60-148 (149)
131 2je0_A Acidic leucine-rich nuc 99.5 6.5E-15 2.2E-19 121.7 7.6 122 26-149 16-148 (149)
132 4b8c_D Glucose-repressible alc 99.5 2.6E-15 9E-20 155.9 5.9 150 43-198 216-369 (727)
133 1w8a_A SLIT protein; signaling 99.5 1.7E-14 5.8E-19 124.6 9.4 129 216-360 11-140 (192)
134 4fs7_A Uncharacterized protein 99.5 1.9E-14 6.6E-19 139.1 10.2 331 15-375 59-393 (394)
135 2o6r_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 119.7 10.5 130 215-360 9-138 (177)
136 4b8c_D Glucose-repressible alc 99.5 8.4E-15 2.9E-19 152.1 6.0 172 94-274 219-403 (727)
137 2wfh_A SLIT homolog 2 protein 99.5 7.4E-14 2.5E-18 120.5 10.6 128 216-360 13-140 (193)
138 3un9_A NLR family member X1; l 99.5 7.9E-14 2.7E-18 133.0 10.1 188 165-360 71-284 (372)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.7E-19 122.8 4.7 131 236-382 17-152 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-14 2.5E-18 118.8 7.7 106 239-358 43-152 (176)
141 4gt6_A Cell surface protein; l 99.4 8.1E-13 2.8E-17 127.7 14.1 324 20-381 56-389 (394)
142 3g39_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 111.0 10.4 114 264-392 11-125 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 109.9 10.0 109 264-387 14-122 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.8E-19 126.5 -3.7 125 235-376 45-180 (198)
145 1ds9_A Outer arm dynein; leuci 99.4 8.2E-15 2.8E-19 127.3 -4.7 106 70-178 43-152 (198)
146 4gt6_A Cell surface protein; l 99.3 3.4E-12 1.2E-16 123.3 11.4 319 3-358 65-390 (394)
147 3g39_A Variable lymphocyte rec 99.3 1.9E-12 6.4E-17 109.2 5.7 85 27-111 30-114 (170)
148 2r9u_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 108.0 5.8 102 30-134 15-121 (174)
149 4h09_A Hypothetical leucine ri 99.2 2.1E-10 7.3E-15 110.1 14.4 303 21-370 40-356 (379)
150 4h09_A Hypothetical leucine ri 99.2 2.4E-10 8.3E-15 109.7 13.1 305 3-347 47-357 (379)
151 2ifg_A High affinity nerve gro 99.1 9.9E-11 3.4E-15 111.0 9.4 100 294-394 27-127 (347)
152 3e4g_A ATP synthase subunit S, 99.1 8.2E-11 2.8E-15 97.7 5.8 105 298-402 61-173 (176)
153 2ifg_A High affinity nerve gro 99.0 1.8E-10 6.2E-15 109.2 6.9 99 31-131 12-116 (347)
154 2ra8_A Uncharacterized protein 99.0 2.5E-09 8.4E-14 101.0 12.2 132 140-273 192-341 (362)
155 2ra8_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 103.4 9.7 60 296-357 277-341 (362)
156 3e4g_A ATP synthase subunit S, 98.9 2.4E-09 8.2E-14 88.8 7.8 99 3-102 62-170 (176)
157 1io0_A Tropomodulin; LRR prote 98.9 8.3E-09 2.8E-13 87.9 11.4 112 20-131 29-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.8 2.7E-08 9.3E-13 84.7 10.8 69 184-252 32-107 (185)
159 3rw6_A Nuclear RNA export fact 98.2 3.1E-07 1E-11 82.2 1.9 41 49-89 168-210 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.4E-06 4.7E-11 77.9 5.2 82 24-107 167-259 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.1 1.6E-05 5.5E-10 67.1 10.3 109 23-131 37-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 1.6E-05 5.6E-10 67.1 9.0 116 187-310 40-169 (197)
163 3rfe_A Platelet glycoprotein I 97.5 0.00016 5.5E-09 57.0 5.7 69 325-396 11-81 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.022 7.7E-07 44.5 6.2 36 299-334 32-67 (130)
165 2lz0_A Uncharacterized protein 75.8 4.9 0.00017 29.3 5.1 45 310-355 8-52 (100)
166 2lz0_A Uncharacterized protein 73.0 3.4 0.00012 30.2 3.7 39 293-332 15-53 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-42 Score=355.21 Aligned_cols=382 Identities=21% Similarity=0.203 Sum_probs=249.7
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..|.++++|++|
T Consensus 56 l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 356777777776 4665556666667777777777766666556666666666666666666665544555555555555
Q ss_pred EccCCcCC------------------------chhhHhhcCCCCCc--EEEccccCCCC---------------------
Q 011674 81 DLWGSQVS------------------------NRGAAVLKMFPRLS--FLNLAWTGVTK--------------------- 113 (480)
Q Consensus 81 ~l~~~~i~------------------------~~~~~~l~~l~~L~--~L~l~~n~l~~--------------------- 113 (480)
++++|.+. +..+..+..+++|+ +|++++|.+..
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 55554444 33344444455554 44444433221
Q ss_pred -----------------------------------------------------------CCCCCCCCEEEcCCCcccchh
Q 011674 114 -----------------------------------------------------------LPNISSLECLNLSNCTIDSIL 134 (480)
Q Consensus 114 -----------------------------------------------------------l~~~~~L~~L~l~~~~l~~~~ 134 (480)
+..+++|++|++++|.+..+|
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp 294 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC
Confidence 223567888888888888888
Q ss_pred ccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc---hhhccCCCCCeeeCcCCCCCC---------
Q 011674 135 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGD--------- 202 (480)
Q Consensus 135 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~L~l~~n~l~~--------- 202 (480)
..+..+++|++|++++|.+...++. .+.++++|++|++++|.+... ..+..+++|++|++++|.+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 8888888888888888888766442 234566666666666654421 224445555555555554443
Q ss_pred -----------------hhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCcc
Q 011674 203 -----------------DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 265 (480)
Q Consensus 203 -----------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 265 (480)
..+..+..+ ++|++|++++|.+....+...+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 333333333 45555555555544433333234456666666666666655555666666777
Q ss_pred EEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCC
Q 011674 266 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 345 (480)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 345 (480)
+|++++|.+.+.... ....+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus 453 ~L~L~~n~l~~~~~~---------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQ---------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp EEECTTCBCGGGEEC---------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred EEECCCCCCCccccc---------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 777777766542110 01257788899999999999888888888889999999999999988888888899
Q ss_pred CCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 346 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 346 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
++| +|++++|.+++..+..+..+++|+.+++++|++.|++...++..+.
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 999 9999999998887777777889999999999999888866665543
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-41 Score=350.45 Aligned_cols=241 Identities=15% Similarity=0.106 Sum_probs=158.6
Q ss_pred CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChh--HHHHHhh-----
Q 011674 139 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACV----- 211 (480)
Q Consensus 139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~----- 211 (480)
.+++|++|++++|.+..++. + .+++|+.|++++|.......+..+++|++|++++|.++... +..+..+
T Consensus 305 ~~~~L~~L~l~~n~l~~lp~---~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQLKQFPT---L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp TTCCCSEEEEESCCCSSCCC---C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred ccccCCEEEcccccCccccc---C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 44567777777777755552 1 45556666655553222223344445555555554443321 2223333
Q ss_pred -----------------cCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccc
Q 011674 212 -----------------GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 274 (480)
Q Consensus 212 -----------------~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l 274 (480)
+++|+.|++++|.+....+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 381 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 381 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp EECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred eECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 155555555555555444422234566677777777766665566666777777777777776
Q ss_pred ccc-ccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEe
Q 011674 275 KGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 353 (480)
Q Consensus 275 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 353 (480)
.+. .+. .++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 461 ~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 461 KDNTLSN------------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp GGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCcchHH------------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 652 343 5778888888888888888877778888888888888888888877778888888888888
Q ss_pred cCCccCcccccCCCCCC-CCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 354 RDAVLTNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 354 ~~n~i~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
++|+++... ..+..++ +|+++++++|++.|++...|+.++..
T Consensus 529 ~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 529 SFNRIETSK-GILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp TTSCCCCEE-SCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred CCCcCcccC-HhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 888887543 3366665 58899999998888888888877664
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-41 Score=343.94 Aligned_cols=379 Identities=18% Similarity=0.147 Sum_probs=260.0
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+++++|+|++| .++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46899999999 78888888999999999999999999998889999999999999999999998899999999999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchh-ccCCCCCCcc--EEEccCCCC
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL-EGNENKAPLA--KISLAGTTF 153 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~--~L~l~~~~~ 153 (480)
+++|.+++..+..+.++++|++|++++|.+..++ .+++|++|++++|.+..++ ..+..+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999999987888999999999999999988752 4678899999988887653 3344566666 566666655
Q ss_pred CChhHHH-------------------------------------------------------------------------
Q 011674 154 INEREAF------------------------------------------------------------------------- 160 (480)
Q Consensus 154 ~~~~~~~------------------------------------------------------------------------- 160 (480)
.+.++..
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 4322211
Q ss_pred -hhhcCCCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCC
Q 011674 161 -LYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 238 (480)
Q Consensus 161 -~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 238 (480)
.+..+++|++|++++|.++.+ ..+..+++|++|++++|.+....+..+..+ ++|++|++++|.+....+...+..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccccchhhhhccC
Confidence 133456666677766666655 345566667777777776665555444444 55666666655544222222123455
Q ss_pred CCcEEEccCCCCChHH--HHHhhcCCCccEEEccCccccccccccccchhh-------------hhcHHHhhcCCCCCEE
Q 011674 239 NLEILSLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL-------------VLSLTALQNLNHLERL 303 (480)
Q Consensus 239 ~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~L~~L 303 (480)
+|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+........ ......+..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 5555555555554433 333444455555555555444333321000000 0000135666777777
Q ss_pred eCCCCCccccccccccccccCceeecCCCCCChhh---HHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCC
Q 011674 304 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS---LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 304 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n 380 (480)
++++|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 77777776666666777777777777777766521 234667777788888887777777777777788888888888
Q ss_pred cc
Q 011674 381 WL 382 (480)
Q Consensus 381 ~~ 382 (480)
.+
T Consensus 511 ~l 512 (606)
T 3t6q_A 511 RL 512 (606)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-41 Score=357.27 Aligned_cols=353 Identities=20% Similarity=0.146 Sum_probs=266.5
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhh-ccCCCCCCEEEccCCcCCchhhHhhcCCC-CCcEE
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFP-RLSFL 104 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~l~~l~-~L~~L 104 (480)
++|++|++++|.+++..|..|+++++|++|++++|.+.+..|.. |.++++|++|++++|.+++..|..+..++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 55666666666555555555556666666666666555333332 55666666666666665555555555554 66666
Q ss_pred EccccCCCC-----CCC--CCCCCEEEcCCCccc-chhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCC
Q 011674 105 NLAWTGVTK-----LPN--ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 176 (480)
Q Consensus 105 ~l~~n~l~~-----l~~--~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (480)
++++|.+++ +.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEEECCCC
Confidence 666665542 112 567888888888887 5777777889999999999888754332 3457889999999999
Q ss_pred ccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHH
Q 011674 177 SLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 254 (480)
Q Consensus 177 ~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 254 (480)
.+.+. ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+..+ +.+++|+.|++++|.+.+..
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEEC
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcC
Confidence 88754 567888999999999999987777777777 899999999999987766665 56899999999999998888
Q ss_pred HHHhhcCCCccEEEccCccccccccccccchhhh----------------------------------------h-----
Q 011674 255 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV----------------------------------------L----- 289 (480)
Q Consensus 255 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~----------------------------------------~----- 289 (480)
|..+..+++|+.|++++|.+.+..|......... .
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 8889999999999999999887666432110000 0
Q ss_pred -------------cHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCC
Q 011674 290 -------------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 356 (480)
Q Consensus 290 -------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 356 (480)
....++.+++|+.|++++|++++.+|..++.+++|+.|+|++|.+++..|..++.+++|+.|++++|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 0012445678999999999999989999999999999999999999888899999999999999999
Q ss_pred ccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 357 VLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 357 ~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
++++..+..+..++.|++|++++|++
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred cccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999999999986
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=341.35 Aligned_cols=209 Identities=21% Similarity=0.191 Sum_probs=170.2
Q ss_pred CCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChh--HHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcE
Q 011674 165 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 242 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 242 (480)
+++|+.|++++|.+........+++|++|++++|.++... +..+..+ ++|++|++++|.+...+.. +..+++|++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~--~~~l~~L~~ 400 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN--FLGLEQLEH 400 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEEEEEE--EETCTTCCE
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCcccccccc--ccccCCCCE
Confidence 4455555555555444433367788888888888887653 4556666 8899999999988876655 357889999
Q ss_pred EEccCCCCChHHH-HHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcc-ccccccccc
Q 011674 243 LSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-DATLFPLST 320 (480)
Q Consensus 243 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~ 320 (480)
|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+. .+.++++|++|++++|.+. +..|..+..
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------IFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------------hhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 9999988876544 4577889999999999998887666 6889999999999999987 456788999
Q ss_pred cccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHH
Q 011674 321 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 388 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 388 (480)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+++..
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999998788899999999999999999998888888999999999999999887653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-40 Score=339.11 Aligned_cols=359 Identities=21% Similarity=0.167 Sum_probs=213.8
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+|++| .++......|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 34666666666 45555555666666666666666666665555666666666666666666665566666666666666
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCC--CC----CCCCCCEEEcCCCccc------------------------
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP----NISSLECLNLSNCTID------------------------ 131 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~--l~----~~~~L~~L~l~~~~l~------------------------ 131 (480)
+++|.+.+..+..++++++|++|++++|.+.+ ++ .+++|++|++++|.+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 66666665554556666666666666665553 22 4555555555555544
Q ss_pred ----chhccCCCCCCccEEEccCCCCC-----------------------------------------------------
Q 011674 132 ----SILEGNENKAPLAKISLAGTTFI----------------------------------------------------- 154 (480)
Q Consensus 132 ----~~~~~~~~~~~L~~L~l~~~~~~----------------------------------------------------- 154 (480)
.+++......+|++|++++|.+.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 33333333335566666655442
Q ss_pred ----------------------------ChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHH
Q 011674 155 ----------------------------NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 206 (480)
Q Consensus 155 ----------------------------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 206 (480)
.++ .+..+++|+.|++++|.+..++.+ .+++|++|++++|......
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC--
T ss_pred cccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch--
Confidence 111 133456889999999999888877 9999999999999544322
Q ss_pred HHHhhcCCCcEEEccCCCCCcch--HHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccc
Q 011674 207 MVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 284 (480)
Q Consensus 207 ~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 284 (480)
.+..+ ++|++|++++|.++... +..+ ..+++|++|++++|.+.... ..+..+++|+.|++++|.+.+..+..
T Consensus 345 ~~~~l-~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~--- 418 (606)
T 3vq2_A 345 KKVAL-PSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFS--- 418 (606)
T ss_dssp CCCCC-TTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTT---
T ss_pred hhccC-CCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChh---
Confidence 33344 89999999999988763 3333 46788888888888776543 45666777777777777776654410
Q ss_pred hhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCCh-hhHHhhcCCCCCCEEEecCCccCcccc
Q 011674 285 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD-VSLHQLSSLSKLTNLSIRDAVLTNSGL 363 (480)
Q Consensus 285 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~ 363 (480)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+
T Consensus 419 --------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 419 --------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp --------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred --------hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 34444455555555554444444444444444444444444443 123334444444444444444444444
Q ss_pred cCCCCCCCCcEEEcCCCc
Q 011674 364 GSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 364 ~~~~~~~~L~~l~l~~n~ 381 (480)
..+..+++|++|++++|.
T Consensus 491 ~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhhcccccCCEEECCCCc
Confidence 444444444444444444
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-40 Score=347.58 Aligned_cols=364 Identities=24% Similarity=0.262 Sum_probs=236.0
Q ss_pred CCCcEEecCCCCCCChhhHHh---hhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCC
Q 011674 2 TCLKELDLSRCVKVTDAGMKH---LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 78 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 78 (480)
++|++|+|++| .++...+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..|. ++++++|+
T Consensus 151 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 151 NSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 34555555555 344333333 4455555555555555544322 25677788888888877776555 88888999
Q ss_pred EEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCC-C--CCCCCCEEEcCCCccc-chhccCCC-CCCccEEEccCCCC
Q 011674 79 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-P--NISSLECLNLSNCTID-SILEGNEN-KAPLAKISLAGTTF 153 (480)
Q Consensus 79 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l-~--~~~~L~~L~l~~~~l~-~~~~~~~~-~~~L~~L~l~~~~~ 153 (480)
+|++++|.+++..+..+..+++|++|++++|.+.+. + .+++|++|++++|.+. .+|..+.. +++|++|++++|.+
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 999999988888888888999999999998887642 2 5778888888888887 67777775 48899999988887
Q ss_pred CChhHHHhhhcCCCceEEEccCCccCc-ch--hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchH
Q 011674 154 INEREAFLYIETSLLSFLDVSNSSLSR-FC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 230 (480)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 230 (480)
.+..+. .+.++++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+..+..+.++|+.|++++|.+++..+
T Consensus 307 ~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 307 YGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 643332 24578888888888888763 32 377888888888888887655555555552266666666666554333
Q ss_pred HHHh-------------------------cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccch
Q 011674 231 GILA-------------------------GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET 285 (480)
Q Consensus 231 ~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 285 (480)
..+. ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+.
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----- 460 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----- 460 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-----
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-----
Confidence 2221 2344444444444444444444444444455555554444444443
Q ss_pred hhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccC
Q 011674 286 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 365 (480)
Q Consensus 286 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 365 (480)
.+..+++|++|++++|++.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..
T Consensus 461 -------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 461 -------ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp -------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred -------HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 4556666666666666666555666666666666666666666555566666666666666666666666666
Q ss_pred CCCCCCCcEEEcCCCcc
Q 011674 366 FKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 366 ~~~~~~L~~l~l~~n~~ 382 (480)
+..+++|+.|++++|++
T Consensus 534 l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GGGCTTCCEEECCSSEE
T ss_pred HcCCCCCCEEECCCCcc
Confidence 66666666666666665
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-39 Score=321.06 Aligned_cols=365 Identities=18% Similarity=0.151 Sum_probs=303.9
Q ss_pred EEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCH-HHHhhccCCCCCCEEEccC
Q 011674 6 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLWG 84 (480)
Q Consensus 6 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~ 84 (480)
.++.+++ .++..+. -.++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus 14 ~~~c~~~-~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINR-GLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSS-CCSSCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCC-CcccCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555 4443322 23789999999999998878889999999999999998864 3456789999999999999
Q ss_pred CcCCchhhHhhcCCCCCcEEEccccCCCC-------CCCCCCCCEEEcCCCcccchh-cc-CCCCCCccEEEccCCCCCC
Q 011674 85 SQVSNRGAAVLKMFPRLSFLNLAWTGVTK-------LPNISSLECLNLSNCTIDSIL-EG-NENKAPLAKISLAGTTFIN 155 (480)
Q Consensus 85 ~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-------l~~~~~L~~L~l~~~~l~~~~-~~-~~~~~~L~~L~l~~~~~~~ 155 (480)
|.+++..+..+.++++|++|++++|.+++ +..+++|++|++++|.+..+. .. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99998888889999999999999999875 667899999999999998774 44 5689999999999999876
Q ss_pred hhHH-HhhhcCCCceEEEccCCccCcchh----------hccCCCCCeeeCcCCCCCChhHHHHHhhc--CCCcEEEccC
Q 011674 156 EREA-FLYIETSLLSFLDVSNSSLSRFCF----------LTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSN 222 (480)
Q Consensus 156 ~~~~-~~~~~~~~L~~L~l~~~~l~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~ 222 (480)
..+. +.......++.|++++|.+...+. +..+++|++|++++|.+....+..+.... .+|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 5442 221123789999999999877632 33568999999999999988887776553 7899999998
Q ss_pred CCCCcchHH----------HHh-cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcH
Q 011674 223 TRFSSAGVG----------ILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 291 (480)
Q Consensus 223 n~l~~~~~~----------~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 291 (480)
|........ .+. -.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------- 317 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----------- 317 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----------
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-----------
Confidence 855432211 110 1246899999999999998888899999999999999999988776
Q ss_pred HHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCC
Q 011674 292 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 371 (480)
Q Consensus 292 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 371 (480)
.|.++++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++.....+..+++
T Consensus 318 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 318 -AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp -TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 6889999999999999999988889999999999999999999988888999999999999999999987777888999
Q ss_pred CcEEEcCCCcccCHHH
Q 011674 372 LKLLDLHGGWLLTEDA 387 (480)
Q Consensus 372 L~~l~l~~n~~~~~~~ 387 (480)
|++|++++|++.+++.
T Consensus 397 L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCCcccCCC
Confidence 9999999999988775
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-39 Score=326.27 Aligned_cols=369 Identities=19% Similarity=0.204 Sum_probs=278.1
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47999999999 68877778899999999999999999988888899999999999999999988888899999999999
Q ss_pred ccCCcCCch-hhHhhcCCCCCcEEEccccC-CCC-----CCCCCCCCEEEcCCCcccc-hhccCCCCCCccEEEccCCCC
Q 011674 82 LWGSQVSNR-GAAVLKMFPRLSFLNLAWTG-VTK-----LPNISSLECLNLSNCTIDS-ILEGNENKAPLAKISLAGTTF 153 (480)
Q Consensus 82 l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~-l~~-----l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~~ 153 (480)
+++|.+++. .+..+.++++|++|++++|. +.. +..+++|++|++++|.+.. .|..+..+++|++|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999998863 45678899999999999987 433 4568889999999998885 566677788888888888877
Q ss_pred CChhHHHhhhcCCCceEEEccCCccCcch-----h---------------------------------------------
Q 011674 154 INEREAFLYIETSLLSFLDVSNSSLSRFC-----F--------------------------------------------- 183 (480)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~--------------------------------------------- 183 (480)
...+..+ +..+++|++|++++|.+.+.+ .
T Consensus 185 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 AFLLEIF-ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TTHHHHH-HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cccchhh-HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 6665543 345677777777777665420 0
Q ss_pred ------------------------------------------hccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEcc
Q 011674 184 ------------------------------------------LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 221 (480)
Q Consensus 184 ------------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 221 (480)
+...++|++|++++|.+.......+..+ ++|+.|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l-~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL-KSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC-TTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC-ccccEEEcc
Confidence 0112345555566665554433333445 788888888
Q ss_pred CCCCCcchHHH--HhcCCCCCcEEEccCCCCChHHH--HHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcC
Q 011674 222 NTRFSSAGVGI--LAGHLPNLEILSLSGTQIDDYAI--SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 297 (480)
Q Consensus 222 ~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 297 (480)
+|.+.+..+.. ..+.+++|+.|++++|.+++..+ ..+..+++|++|++++|.++..+.. +..+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-------------~~~~ 409 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-------------CQWP 409 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-------------CCCC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-------------hccc
Confidence 88887755432 23567888888888888876643 4577888888888888888754332 4455
Q ss_pred CCCCEEeCCCCCccccccc-----------------cccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 298 NHLERLNLEQTQVSDATLF-----------------PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~-----------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
++|++|++++|.++..... ....+++|++|++++|+++.+. . ...+++|++|++++|++++
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip-~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP-D-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C-GGGCTTCCEEECCSSCCCC
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCC-C-cccCccCCEEecCCCccCC
Confidence 5666666666655432111 1136788999999999888653 2 4578999999999999998
Q ss_pred ccccCCCCCCCCcEEEcCCCcccCHHHH
Q 011674 361 SGLGSFKPPRSLKLLDLHGGWLLTEDAI 388 (480)
Q Consensus 361 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 388 (480)
..+..+..+++|+.|++++|++.|++..
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8887788899999999999999998873
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-40 Score=336.87 Aligned_cols=343 Identities=14% Similarity=0.193 Sum_probs=289.3
Q ss_pred HHhhhCCCCCcEEEcCCCcCCHH-----------------HHHHHc--CCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 20 MKHLLSISTLEKLWLSETGLTAD-----------------GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 20 ~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+..|..|+++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 45688999999999999999985 778888 99999999999999999999999999999999
Q ss_pred EccCCc-CCc-hhhHhhcCC------CCCcEEEccccCCCCCC------CCCCCCEEEcCCCccc-chhccCCCCCCccE
Q 011674 81 DLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVTKLP------NISSLECLNLSNCTID-SILEGNENKAPLAK 145 (480)
Q Consensus 81 ~l~~~~-i~~-~~~~~l~~l------~~L~~L~l~~n~l~~l~------~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~ 145 (480)
++++|+ +++ ..|..+..+ ++|++|++++|.++.+| .+++|++|++++|.+. .+| .+..+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 999998 988 788888776 99999999999998766 4789999999999999 888 7778999999
Q ss_pred EEccCCCCCChhHHHhhhcCCC-ceEEEccCCccCcchh-hcc--CCCCCeeeCcCCCCCChhHHHHH-------hhcCC
Q 011674 146 ISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFCF-LTQ--MKALEHLDLSSSMIGDDSVEMVA-------CVGAN 214 (480)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~-~~~--~~~L~~L~l~~n~l~~~~~~~~~-------~~~~~ 214 (480)
|++++|.+..++.. +..+++ |+.|++++|.+..++. +.. +++|++|++++|.+....+..+. .. ++
T Consensus 358 L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~ 434 (636)
T 4eco_A 358 LNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-IN 434 (636)
T ss_dssp EECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CC
T ss_pred EECCCCccccccHh--hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CC
Confidence 99999998866654 457888 9999999999987743 333 34899999999999887666555 44 68
Q ss_pred CcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCC-------CccEEEccCccccccccccccchhh
Q 011674 215 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP-------SLKFIDISNTDIKGFIQQVGAETDL 287 (480)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~l~~~~l~~~~~~~~~~~~~ 287 (480)
|+.|++++|.++..+...+ ..+++|++|++++|.++......+.... +|+.|++++|.++..+.
T Consensus 435 L~~L~Ls~N~l~~lp~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------- 505 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD-------- 505 (636)
T ss_dssp EEEEECCSSCCCSCCTHHH-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG--------
T ss_pred CCEEECcCCccCcCCHHHH-ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh--------
Confidence 9999999999997766554 5689999999999999855444444332 89999999999996543
Q ss_pred hhcHHHhh--cCCCCCEEeCCCCCccccccccccccccCceeecC------CCCCChhhHHhhcCCCCCCEEEecCCccC
Q 011674 288 VLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR------NASLTDVSLHQLSSLSKLTNLSIRDAVLT 359 (480)
Q Consensus 288 ~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 359 (480)
.+. .+++|++|++++|++++ .|..+..+++|++|+|+ +|.+.+..+..+..+++|++|++++|.++
T Consensus 506 -----~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 506 -----DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp -----GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred -----hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 354 89999999999999998 67888899999999994 56777777888999999999999999995
Q ss_pred cccccCCCCCCCCcEEEcCCCcccC
Q 011674 360 NSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 360 ~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
. .+..+. ++|+.|++++|++.+
T Consensus 580 ~-ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 580 K-VNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp B-CCSCCC--TTCCEEECCSCTTCE
T ss_pred c-cCHhHh--CcCCEEECcCCCCcc
Confidence 4 444443 899999999998743
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=321.54 Aligned_cols=368 Identities=20% Similarity=0.186 Sum_probs=270.3
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++.. |.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE-ECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec-Ccc--ccCCccEEe
Confidence 47888999988 67777777888889999999999988887778888889999999998888753 333 788899999
Q ss_pred ccCCcCCch-hhHhhcCCCCCcEEEccccCCCC--CCCCCCC--CEEEcCCCcc--c-chhccCC---------------
Q 011674 82 LWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTK--LPNISSL--ECLNLSNCTI--D-SILEGNE--------------- 138 (480)
Q Consensus 82 l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~l~~--l~~~~~L--~~L~l~~~~l--~-~~~~~~~--------------- 138 (480)
+++|.+++. .|..++++++|++|++++|.++. +..+++| ++|++++|.+ . ..|..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 998888863 56788888889999988888764 3355666 8888888776 2 2222222
Q ss_pred -----------CCCCccEEEccCCC------------------------------CCChh--HHHhhhcCCCceEEEccC
Q 011674 139 -----------NKAPLAKISLAGTT------------------------------FINER--EAFLYIETSLLSFLDVSN 175 (480)
Q Consensus 139 -----------~~~~L~~L~l~~~~------------------------------~~~~~--~~~~~~~~~~L~~L~l~~ 175 (480)
.+++|+.+++++|. +.+.. ........++|++|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 23444444444432 22110 000011234677777777
Q ss_pred CccCc-c-hhh-----ccCCCCCeeeCcCCCC--------------------------CChhHHHHHhhcCCCcEEEccC
Q 011674 176 SSLSR-F-CFL-----TQMKALEHLDLSSSMI--------------------------GDDSVEMVACVGANLRNLNLSN 222 (480)
Q Consensus 176 ~~l~~-~-~~~-----~~~~~L~~L~l~~n~l--------------------------~~~~~~~~~~~~~~L~~L~L~~ 222 (480)
|.+.+ + ..+ ..+++|+.+++++|.+ ..... +..+ ++|++|++++
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~Ls~ 333 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKI-SPFLHLDFSN 333 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-CCCCEEECCS
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc--hhhC-CcccEEEeEC
Confidence 76653 2 222 4555555555555554 22110 0233 7899999999
Q ss_pred CCCCcchHHHHhcCCCCCcEEEccCCCCCh--HHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCC
Q 011674 223 TRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL 300 (480)
Q Consensus 223 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 300 (480)
|.+++..+..+ ..+++|++|++++|++++ ..+..+..+++|+.|++++|.+.+..+.. .+..+++|
T Consensus 334 n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----------~~~~l~~L 401 (520)
T 2z7x_B 334 NLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----------DCSWTKSL 401 (520)
T ss_dssp SCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----------SCCCCTTC
T ss_pred CccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----------hhccCccC
Confidence 99988666555 578999999999999987 44577889999999999999998833330 47788999
Q ss_pred CEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCC
Q 011674 301 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 301 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n 380 (480)
++|++++|++++..+..+. ++|++|++++|+++.. +..+..+++|++|++++|.++......+..+++|++|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 9999999999876665543 7999999999999965 555669999999999999999766556888899999999999
Q ss_pred cccCHHHHHHH
Q 011674 381 WLLTEDAILQF 391 (480)
Q Consensus 381 ~~~~~~~~~~~ 391 (480)
++.|++...|+
T Consensus 479 ~~~c~c~~~~~ 489 (520)
T 2z7x_B 479 PWDCSCPRIDY 489 (520)
T ss_dssp CBCCCHHHHHH
T ss_pred CCcccCCchHH
Confidence 99999998887
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-39 Score=334.28 Aligned_cols=359 Identities=14% Similarity=0.161 Sum_probs=304.9
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCc--------------------------------------------
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG-------------------------------------------- 38 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------------------------------------- 38 (480)
+++.|+|+++ .+....++.++++++|++|+|++|.
T Consensus 82 ~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 82 RVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5789999999 6776777899999999999999884
Q ss_pred ----------------------------------CCHHHHHHHcCCCCCCEEEcCCCCCCHH-----------------H
Q 011674 39 ----------------------------------LTADGIALLSSLQNLSVLDLGGLPVTDL-----------------V 67 (480)
Q Consensus 39 ----------------------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~ 67 (480)
+++ +|..|+++++|++|+|++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 334 566788999999999999999985 7
Q ss_pred Hhhcc--CCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccC-CCC--CC----C------CCCCCEEEcCCCcccc
Q 011674 68 LRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTIDS 132 (480)
Q Consensus 68 ~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-l~~--l~----~------~~~L~~L~l~~~~l~~ 132 (480)
|..++ ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ +| . +++|++|++++|.+..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 88888 99999999999999999999999999999999999998 875 43 3 3899999999999999
Q ss_pred hhc--cCCCCCCccEEEccCCCCC-ChhHHHhhhcCCCceEEEccCCccCcc-hhhccCCC-CCeeeCcCCCCCChhHHH
Q 011674 133 ILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVEM 207 (480)
Q Consensus 133 ~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~~~ 207 (480)
+|. .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+..+ ..+..+++ |++|++++|.++. .+..
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~ 395 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNI 395 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cchh
Confidence 998 8889999999999999998 555 456889999999999999877 46888899 9999999999884 3333
Q ss_pred HHhh-cCCCcEEEccCCCCCcchHHHHhc-------CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcccccccc
Q 011674 208 VACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 279 (480)
Q Consensus 208 ~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 279 (480)
+... .++|+.|++++|.+....+..+ . .+++|+.|++++|.++...+..+..+++|+.|++++|.++..+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 3332 1379999999999988666544 2 46799999999999997776677789999999999999996554
Q ss_pred ccccchhhhhcHHHhhc-------CCCCCEEeCCCCCcccccccccc--ccccCceeecCCCCCChhhHHhhcCCCCCCE
Q 011674 280 QVGAETDLVLSLTALQN-------LNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTN 350 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~-------~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 350 (480)
. .+.. +++|++|++++|.++. .+..+. .+++|++|+|++|++++ .+..+..+++|++
T Consensus 475 ~------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 475 N------------SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp S------------SSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred H------------HhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 4 2333 3389999999999995 456665 89999999999999998 4677889999999
Q ss_pred EEe------cCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 351 LSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 351 L~l------~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
|++ ++|.+.+..+..+..+++|++|++++|.+
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 999 46778888888888899999999999987
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.8e-37 Score=303.31 Aligned_cols=341 Identities=20% Similarity=0.294 Sum_probs=296.5
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+++++ .+.. .+.+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 46 ~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 57999999998 5664 3458889999999999999998765 8999999999999999988755 99999999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCC---CCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhH
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 158 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l---~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 158 (480)
+++|.+++..+ +..+++|++|++++|.+..+ ..+++|++|+++ +.+..+++ +..+++|+.|++++|.+...+.
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 194 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV 194 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChh
Confidence 99999998654 88999999999999988765 478899999997 45555544 7789999999999999887654
Q ss_pred HHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCC
Q 011674 159 AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 238 (480)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 238 (480)
+..+++|++|++++|.+.....+..+++|++|++++|.+... ..+..+ ++|+.|++++|.+....+ +..++
T Consensus 195 ---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~---~~~l~ 265 (466)
T 1o6v_A 195 ---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQISNLAP---LSGLT 265 (466)
T ss_dssp ---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG---GTTCT
T ss_pred ---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcC-CCCCEEECCCCccccchh---hhcCC
Confidence 457899999999999999987789999999999999999875 345555 899999999999988776 35799
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccc
Q 011674 239 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 318 (480)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 318 (480)
+|+.|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+..+ +
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------PISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------GGGGCTTCSEEECCSSCCSCCGG--G
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------hhcCCCCCCEEECcCCcCCCchh--h
Confidence 99999999999988655 789999999999999998763 36789999999999999998655 7
Q ss_pred cccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 319 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 319 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|++..
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8899999999999999886 368899999999999999988766 7788999999999998743
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-38 Score=325.42 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=122.4
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+++++|+|++| .++......|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46889999988 67777777788899999999999988888788888899999999999888877666788889999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCC-----CCCCCCCEEEcCCCcccchhccC---CCCCCccEEEccCCCC
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGN---ENKAPLAKISLAGTTF 153 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l~~~~l~~~~~~~---~~~~~L~~L~l~~~~~ 153 (480)
+++|.+.+..+..+.++++|++|++++|.+++. ..+++|++|++++|.+..+++.. ..+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 998888877777888888899999988887753 36778888888888777654432 2456677777777665
Q ss_pred CCh
Q 011674 154 INE 156 (480)
Q Consensus 154 ~~~ 156 (480)
.++
T Consensus 184 ~~~ 186 (680)
T 1ziw_A 184 KEF 186 (680)
T ss_dssp CCB
T ss_pred ccc
Confidence 543
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-37 Score=324.48 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+|++| .++...+..+.++++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..|+++++|++|+
T Consensus 49 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 45555555555 34444445555555555555555555554434455555555555555555544444455555555555
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCC
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 111 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l 111 (480)
+++|.+++..+..+.++++|++|++++|.+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcc
Confidence 555555444444444444444444444433
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.9e-38 Score=325.23 Aligned_cols=380 Identities=21% Similarity=0.197 Sum_probs=290.0
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+++++|+|++| .++......|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36899999999 79988888999999999999999999998888999999999999999999998888999999999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC------CCCCCCEEEcCCCcccchhccCC-C---------------
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNE-N--------------- 139 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~l~~~~l~~~~~~~~-~--------------- 139 (480)
+++|++++..+..|+++++|++|++++|.++.++ .+++|++|++++|.+..++.... .
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 9999999888888999999999999999987643 57899999999998765433211 1
Q ss_pred ------------CCCccEEEccCCCCCC-hhH------------------------------------------------
Q 011674 140 ------------KAPLAKISLAGTTFIN-ERE------------------------------------------------ 158 (480)
Q Consensus 140 ------------~~~L~~L~l~~~~~~~-~~~------------------------------------------------ 158 (480)
...+..+++.++.... ...
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 1111222222221100 000
Q ss_pred ------------------------------HHhhhcCCCceEEEccCCccCcc---------------------hhhccC
Q 011674 159 ------------------------------AFLYIETSLLSFLDVSNSSLSRF---------------------CFLTQM 187 (480)
Q Consensus 159 ------------------------------~~~~~~~~~L~~L~l~~~~l~~~---------------------~~~~~~ 187 (480)
...+.....++.|++.+|.+... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 00111234556666666654332 223356
Q ss_pred CCCCeeeCcCCCCCCh--hHHHHHhhcCCCcEEEccCCC-----------------------CCcchHHHHhcCCCCCcE
Q 011674 188 KALEHLDLSSSMIGDD--SVEMVACVGANLRNLNLSNTR-----------------------FSSAGVGILAGHLPNLEI 242 (480)
Q Consensus 188 ~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~-----------------------l~~~~~~~~~~~l~~L~~ 242 (480)
++|+.++++.|.+... .+..+... .+|+.+++..+. .........+..+++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhh-hhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 7888888888876432 12222222 445555544433 222222222345678888
Q ss_pred EEccCCCCChHHHHHhhcCCCccEEEccCccccc-cccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccc
Q 011674 243 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 321 (480)
Q Consensus 243 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 321 (480)
++++.|.+....+..+..+++++.|++++|.+.. ..+. .|..+++|++|+|++|++++..+..|.++
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCch------------hhhhccccCEEECCCCccCCcChHHHcCC
Confidence 8888888887777777888999999999987544 3444 68899999999999999999989999999
Q ss_pred ccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC-CCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 322 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 322 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+ ++|++|++++||+.|+|...||.++.
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 999999999999999888889999999999999999999988888887 68999999999999999988887654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=321.56 Aligned_cols=365 Identities=22% Similarity=0.230 Sum_probs=230.4
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+++++|+|++| .++......|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35788888888 57766667788888888888888888877677788888888888888888777777788888888888
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCC--CC----CCCCCCEEEcCCCcccchhc-cCCCCCCc----cEEEccC
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP----NISSLECLNLSNCTIDSILE-GNENKAPL----AKISLAG 150 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~--l~----~~~~L~~L~l~~~~l~~~~~-~~~~~~~L----~~L~l~~ 150 (480)
+++|.+++..+..++++++|++|++++|.+.. ++ .+++|++|++++|.+..++. .+..+.+| ..+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 88888777666567788888888888887765 22 57778888888877765433 22233333 4444444
Q ss_pred CCCCChhHH-----------------------------------------------------------------------
Q 011674 151 TTFINEREA----------------------------------------------------------------------- 159 (480)
Q Consensus 151 ~~~~~~~~~----------------------------------------------------------------------- 159 (480)
|.+..+++.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 433221110
Q ss_pred ---------HhhhcCCCceEEEccCCccCcch-hhccCCCCCeeeCcCCCCCChhHHHH-------------------Hh
Q 011674 160 ---------FLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMV-------------------AC 210 (480)
Q Consensus 160 ---------~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~-------------------~~ 210 (480)
..+..+++|+.|++++|.+..++ .+..+ +|++|++++|.+.......+ ..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCB
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccccc
Confidence 11334677888888888777663 33444 66666666666553221000 11
Q ss_pred hcCCCcEEEccCCCCCcch--HHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhh
Q 011674 211 VGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 288 (480)
Q Consensus 211 ~~~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 288 (480)
+ ++|++|++++|.++... +..+ ..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+.
T Consensus 346 ~-~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-------- 414 (570)
T 2z63_A 346 L-PSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-------- 414 (570)
T ss_dssp C-TTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS--------
T ss_pred C-CCCCEEeCcCCccCccccccccc-cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch--------
Confidence 1 45555555555554432 1222 2455555555555555443332 44555555555555555544331
Q ss_pred hcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCC-hhhHHhhcCCCCCCEEEecCCccCcccccCCC
Q 011674 289 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 367 (480)
Q Consensus 289 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 367 (480)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+++..+..+.
T Consensus 415 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 415 ---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp ---CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ---hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 14566667777777777766666666666777777777777665 23445566677777777777777766666666
Q ss_pred CCCCCcEEEcCCCcc
Q 011674 368 PPRSLKLLDLHGGWL 382 (480)
Q Consensus 368 ~~~~L~~l~l~~n~~ 382 (480)
.+++|++|++++|.+
T Consensus 492 ~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 492 SLSSLQVLNMASNQL 506 (570)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cccCCCEEeCCCCcC
Confidence 667777777777765
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.8e-38 Score=326.57 Aligned_cols=328 Identities=14% Similarity=0.152 Sum_probs=154.1
Q ss_pred HHHHcCCCCCCEEEcCCCCCCH-----------------HHHhhcc--CCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 44 IALLSSLQNLSVLDLGGLPVTD-----------------LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 44 ~~~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
|..|+++++|++|+|++|.+++ ..|..++ ++++|++|++++|.+.+..|..+.++++|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 3445555666666666666555 2455544 56666666666665555555555666666666
Q ss_pred EccccC-CCC--CC-----------CCCCCCEEEcCCCcccchhc--cCCCCCCccEEEccCCCCCChhHHHhhhcCCCc
Q 011674 105 NLAWTG-VTK--LP-----------NISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLL 168 (480)
Q Consensus 105 ~l~~n~-l~~--l~-----------~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (480)
++++|. +++ +| .+++|++|++++|.+..+|. .+..+++|+.|++++|.+..++ .+..+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcc
Confidence 666665 442 11 23356666666666555555 5555566666666666555443 23455556
Q ss_pred eEEEccCCccCcc-hhhccCCC-CCeeeCcCCCCCChhHHHHHhhc-CCCcEEEccCCCCCcchHHHH--hc--CCCCCc
Q 011674 169 SFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGIL--AG--HLPNLE 241 (480)
Q Consensus 169 ~~L~l~~~~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~--~~--~l~~L~ 241 (480)
+.|++++|.+..+ ..+..+++ |++|++++|.+.. .+..+.... ++|+.|++++|.+.+..+... .. .+++|+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 6666666555544 24455555 5566665555542 222222110 125555555555543221100 00 123455
Q ss_pred EEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccc--
Q 011674 242 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS-- 319 (480)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-- 319 (480)
.|++++|.++......+..+++|+.|++++|.+...+........ ..+.++++|++|+|++|+++. .|..+.
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-----~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~ 750 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-----GNYKNTYLLTTIDLRFNKLTS-LSDDFRAT 750 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-----SCCTTGGGCCEEECCSSCCCC-CCGGGSTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-----ccccccCCccEEECCCCCCcc-chHHhhhc
Confidence 555555555544333333455555555555555433222000000 000111244444444444442 233332
Q ss_pred ccccCceeecCCCCCChhhHHhhcCCCCCCEEEecC------CccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 320 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 320 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
.+++|+.|+|++|.+++. +..+..+++|+.|++++ |.+.+..+..+..+++|+.|++++|.+
T Consensus 751 ~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 444444444444444442 33344444444444433 334444444444444444444444443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-38 Score=328.02 Aligned_cols=344 Identities=16% Similarity=0.148 Sum_probs=226.0
Q ss_pred CCCCcEEecCCCCCCCh-----------------hhHHhhh--CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCC
Q 011674 1 MTCLKELDLSRCVKVTD-----------------AGMKHLL--SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 61 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 61 (480)
+++|++|+|++| .++. ..+..+. ++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 447 L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 578888888888 5775 2455555 8888888888888888877888888888888888888
Q ss_pred C-CCH-HHHhhccCCC-------CCCEEEccCCcCCchhhH--hhcCCCCCcEEEccccCCCCCC---CCCCCCEEEcCC
Q 011674 62 P-VTD-LVLRSLQVLT-------KLEYLDLWGSQVSNRGAA--VLKMFPRLSFLNLAWTGVTKLP---NISSLECLNLSN 127 (480)
Q Consensus 62 ~-~~~-~~~~~~~~l~-------~L~~L~l~~~~i~~~~~~--~l~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~l~~ 127 (480)
. +++ ..|..+.+++ +|++|++++|.++ ..|. .+.++++|++|++++|.++.++ .+++|++|++++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence 7 877 6776665544 8888888888888 4555 7888888888888888877655 566788888888
Q ss_pred CcccchhccCCCCCC-ccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-hhhc------cCCCCCeeeCcCCC
Q 011674 128 CTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLT------QMKALEHLDLSSSM 199 (480)
Q Consensus 128 ~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~------~~~~L~~L~l~~n~ 199 (480)
|.+..+|..+..+++ |+.|++++|.+..++..+.....++|+.|++++|.+.+. +.+. .+++|+.|++++|.
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred CccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 888888888877777 888888888887666543322234588888888877654 2221 33467777777777
Q ss_pred CCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhc------CCCCCcEEEccCCCCChHHHHHhh--cCCCccEEEccC
Q 011674 200 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG------HLPNLEILSLSGTQIDDYAISYMS--MMPSLKFIDISN 271 (480)
Q Consensus 200 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~ 271 (480)
+.......+..+ ++|+.|+|++|.++..+...+.. ++++|+.|++++|+++.. |..+. .+++|+.|++++
T Consensus 685 L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCS
T ss_pred CCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCC
Confidence 775444444444 67777777777776544433211 112666666666666632 33443 566666666666
Q ss_pred ccccccccccccchhhhhcHHHhhcCCCCCEEeCCC------CCccccccccccccccCceeecCCCCCChhhHHhhcCC
Q 011674 272 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ------TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 345 (480)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 345 (480)
|.+++. |. .+..+++|+.|+|++ |.+.+..|..+..+++|+.|+|++|.+..+ |..+.
T Consensus 763 N~L~~l-p~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~-- 826 (876)
T 4ecn_A 763 NCFSSF-PT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT-- 826 (876)
T ss_dssp SCCSSC-CC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--
T ss_pred CCCCcc-ch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--
Confidence 666653 32 355666666666654 444444455555555555555555555322 22222
Q ss_pred CCCCEEEecCCccCccccc
Q 011674 346 SKLTNLSIRDAVLTNSGLG 364 (480)
Q Consensus 346 ~~L~~L~l~~n~i~~~~~~ 364 (480)
++|+.|++++|++....+.
T Consensus 827 ~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp SSSCEEECCSCTTCEEECG
T ss_pred CCCCEEECCCCCCCccChH
Confidence 4555555555555544433
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-37 Score=306.57 Aligned_cols=346 Identities=18% Similarity=0.193 Sum_probs=291.8
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHH-HHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
++|++|+|++| .++...+..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 57999999999 68887788899999999999999998743 35678999999999999999999888999999999999
Q ss_pred EccCCcCCchhhHh--hcCCCCCcEEEccccCCCCCC------CCCCCCEEEcCCCcccchhcc-CC--CCCCccEEEcc
Q 011674 81 DLWGSQVSNRGAAV--LKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEG-NE--NKAPLAKISLA 149 (480)
Q Consensus 81 ~l~~~~i~~~~~~~--l~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~l~~~~l~~~~~~-~~--~~~~L~~L~l~ 149 (480)
++++|.+++..+.. +..+++|++|++++|.+..+. .+++|++|++++|.+..+++. +. ...+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999999866655 899999999999999988652 579999999999999865443 33 33789999999
Q ss_pred CCCCCChhHHHh-------hhcCCCceEEEccCCccCcc--hhh---ccCCCCCeeeCcCCCCCCh----------hHHH
Q 011674 150 GTTFINEREAFL-------YIETSLLSFLDVSNSSLSRF--CFL---TQMKALEHLDLSSSMIGDD----------SVEM 207 (480)
Q Consensus 150 ~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~l~~~--~~~---~~~~~L~~L~l~~n~l~~~----------~~~~ 207 (480)
+|.+...+.... +..+++|+.|++++|.+... ..+ ...++|+.|++++|..... ....
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 999876543211 22458899999999998765 222 2348999999998854321 1111
Q ss_pred HHhh-cCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchh
Q 011674 208 VACV-GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 286 (480)
Q Consensus 208 ~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 286 (480)
+..+ .++|+.|++++|.+....+..+ ..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------ 341 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR------ 341 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG------
T ss_pred cccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh------
Confidence 1111 1689999999999998877665 6799999999999999998888899999999999999999888776
Q ss_pred hhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 287 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 287 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
.+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 342 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 342 ------MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ------GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ------HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 789999999999999999998889999999999999999999988777789999999999999998754
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=335.36 Aligned_cols=271 Identities=19% Similarity=0.187 Sum_probs=138.0
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHH-HHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
++|++|+|++| .++...+..|.++++|++|++++|...+.+ +.+|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 45666666666 455555555566666666666665332222 4555566666666666666655555566666666666
Q ss_pred EccCCcCCchhhHh--hcCCCCCcEEEccccCCCCC------CCCCCCCEEEcCCCcccch-------------------
Q 011674 81 DLWGSQVSNRGAAV--LKMFPRLSFLNLAWTGVTKL------PNISSLECLNLSNCTIDSI------------------- 133 (480)
Q Consensus 81 ~l~~~~i~~~~~~~--l~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~l~~~~l~~~------------------- 133 (480)
++++|.+.+..+.. +.++++|++|++++|.++++ ..+++|++|++++|.+..+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 66666555433332 55556666666666555432 2455555555555544321
Q ss_pred --------hccCCCCC------CccEEEccCCCCCChhHHH-----------------------------------hhhc
Q 011674 134 --------LEGNENKA------PLAKISLAGTTFINEREAF-----------------------------------LYIE 164 (480)
Q Consensus 134 --------~~~~~~~~------~L~~L~l~~~~~~~~~~~~-----------------------------------~~~~ 164 (480)
+..+..+. .|+.|++++|.+....+.. .|..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 11111112 2666666666433211100 0001
Q ss_pred --CCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCC
Q 011674 165 --TSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 240 (480)
Q Consensus 165 --~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 240 (480)
.++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+ ++|++|++++|.++...+..+ ..+++|
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 340 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNF-YGLPKV 340 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSC-SSCTTC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHh-cCCCCC
Confidence 14556666666555544 334555556666666655555444444444 555555555555554443333 345555
Q ss_pred cEEEccCCCCChHHHHHhhcCCCccEEEccCcccc
Q 011674 241 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 275 (480)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 275 (480)
+.|++++|.+....+..|..+++|+.|++++|.++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 55555555555444444444555555555555443
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.2e-36 Score=297.94 Aligned_cols=391 Identities=19% Similarity=0.222 Sum_probs=306.2
Q ss_pred CCCcEEecCCCCCCChhhHHh-hhCCCCCcEEEcCCCcCCHH----HHHHHcCCCCCCEEEcCCCCCCHHHHhhc-cCCC
Q 011674 2 TCLKELDLSRCVKVTDAGMKH-LLSISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVTDLVLRSL-QVLT 75 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~ 75 (480)
++|++|+|+++ .+++..... +..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 57899999999 688776555 78899999999999999864 35667789999999999999988666554 3455
Q ss_pred ----CCCEEEccCCcCCc----hhhHhhcCCCCCcEEEccccCCCC----------CCCCCCCCEEEcCCCcccc-----
Q 011674 76 ----KLEYLDLWGSQVSN----RGAAVLKMFPRLSFLNLAWTGVTK----------LPNISSLECLNLSNCTIDS----- 132 (480)
Q Consensus 76 ----~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~n~l~~----------l~~~~~L~~L~l~~~~l~~----- 132 (480)
+|++|++++|.+++ ..+.++..+++|++|++++|.+++ ....++|++|++++|.++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999985 447788999999999999999874 1235689999999999874
Q ss_pred hhccCCCCCCccEEEccCCCCCChhHHHhh----hcCCCceEEEccCCccCcc------hhhccCCCCCeeeCcCCCCCC
Q 011674 133 ILEGNENKAPLAKISLAGTTFINEREAFLY----IETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGD 202 (480)
Q Consensus 133 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~L~l~~n~l~~ 202 (480)
++..+..+++|++|++++|.+......... ...++|++|++++|.+... ..+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 456666789999999999998754332221 1356999999999998873 466789999999999999987
Q ss_pred hhHHHHHh----hcCCCcEEEccCCCCCcchHHH---HhcCCCCCcEEEccCCCCChHHHHHhhc-----CCCccEEEcc
Q 011674 203 DSVEMVAC----VGANLRNLNLSNTRFSSAGVGI---LAGHLPNLEILSLSGTQIDDYAISYMSM-----MPSLKFIDIS 270 (480)
Q Consensus 203 ~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~ 270 (480)
.....++. .+++|++|++++|.++..+... .+..+++|++|++++|.+++..+..+.. .++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 76655543 1389999999999999865322 2345899999999999998776655553 3699999999
Q ss_pred CccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc-----cccCceeecCCCCCCh----hhHHh
Q 011674 271 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-----FKELIHLSLRNASLTD----VSLHQ 341 (480)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~ 341 (480)
+|.+++.... .....+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ ..+..
T Consensus 322 ~n~l~~~~~~--------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 322 SCSFTAACCS--------HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp TSCCBGGGHH--------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CCCCchHHHH--------HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 9998865211 11236788899999999999998765555443 6799999999999997 45667
Q ss_pred hcCCCCCCEEEecCCccCcccccCCC-----CCCCCcEEEcCCCcccC--HHHHHHHHHhCCceeee
Q 011674 342 LSSLSKLTNLSIRDAVLTNSGLGSFK-----PPRSLKLLDLHGGWLLT--EDAILQFCKMHPRIEVW 401 (480)
Q Consensus 342 l~~l~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~l~l~~n~~~~--~~~~~~~~~~~~~l~~~ 401 (480)
+..+++|++|++++|.+++.+...+. ...+|+.|.+.++.+.. ...+..+.+..|++.+.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 78899999999999999886554332 23579999998887632 33456677788877654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.4e-37 Score=312.84 Aligned_cols=369 Identities=17% Similarity=0.185 Sum_probs=250.1
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++.. |.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEEE
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEEE
Confidence 45777777777 56666666677777777777777777776666677777777777777777643 323 677777777
Q ss_pred ccCCcCCchh-hHhhcCCCCCcEEEccccCCCC--CCCCCCC--CEEEcCCCcc--cc-hhccCC---------------
Q 011674 82 LWGSQVSNRG-AAVLKMFPRLSFLNLAWTGVTK--LPNISSL--ECLNLSNCTI--DS-ILEGNE--------------- 138 (480)
Q Consensus 82 l~~~~i~~~~-~~~l~~l~~L~~L~l~~n~l~~--l~~~~~L--~~L~l~~~~l--~~-~~~~~~--------------- 138 (480)
+++|++++.. |..++++++|++|++++|.++. +..+++| ++|++++|.+ .. .|..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 7777776633 4567777777777777776654 2234444 7777777766 21 111111
Q ss_pred -----------CCCCccEEEccCCCCC-----ChhH-------------------------HHhhhcCCCceEEEccCCc
Q 011674 139 -----------NKAPLAKISLAGTTFI-----NERE-------------------------AFLYIETSLLSFLDVSNSS 177 (480)
Q Consensus 139 -----------~~~~L~~L~l~~~~~~-----~~~~-------------------------~~~~~~~~~L~~L~l~~~~ 177 (480)
.+++|+.+++++|... +... .......++|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 2345555555554310 0000 0001122366677776666
Q ss_pred cCc-ch-hh-----ccC--------------------------CCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCC
Q 011674 178 LSR-FC-FL-----TQM--------------------------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR 224 (480)
Q Consensus 178 l~~-~~-~~-----~~~--------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 224 (480)
+.+ ++ .+ ..+ .+|++|++++|.+..... ...+ ++|++|++++|.
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~l~~n~ 364 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP-SSFTFLNFTQNV 364 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC-CCCCEEECCSSC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCC-CCceEEECCCCc
Confidence 552 21 11 122 234445555544432211 0223 789999999999
Q ss_pred CCcchHHHHhcCCCCCcEEEccCCCCCh--HHHHHhhcCCCccEEEccCccccc-cccccccchhhhhcHHHhhcCCCCC
Q 011674 225 FSSAGVGILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLE 301 (480)
Q Consensus 225 l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~ 301 (480)
+++..+..+ ..+++|+.|++++|++++ ..+..+..+++|+.|++++|.+++ .+.. .+..+++|+
T Consensus 365 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------~~~~l~~L~ 431 (562)
T 3a79_B 365 FTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR------------TCAWAESIL 431 (562)
T ss_dssp CCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC------------CCCCCTTCC
T ss_pred cccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh------------hhcCcccCC
Confidence 888666554 578999999999999886 345668889999999999999987 4333 577889999
Q ss_pred EEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCc
Q 011674 302 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 302 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~ 381 (480)
+|++++|++++..+..+. ++|++|++++|+++.+ +..+..+++|++|++++|+++......+..+++|+.+++++|+
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999998876555443 7899999999999865 4455699999999999999997665558889999999999999
Q ss_pred ccCHHHHHHHHH
Q 011674 382 LLTEDAILQFCK 393 (480)
Q Consensus 382 ~~~~~~~~~~~~ 393 (480)
+.|++...|+.+
T Consensus 509 ~~c~c~~~~~~~ 520 (562)
T 3a79_B 509 WDCTCPGIRYLS 520 (562)
T ss_dssp BCCCHHHHHHHH
T ss_pred cCCCcchHHHHH
Confidence 999999888744
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.7e-35 Score=290.26 Aligned_cols=322 Identities=23% Similarity=0.330 Sum_probs=282.3
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|+|++| .++.... +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 67 l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 578999999999 5775544 8999999999999999998665 8999999999999999988643 8999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCCC---CCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChh
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 157 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 157 (480)
++++|.+.+.. .+..+++|++|+++ +.+.. +..+++|++|++++|.+..++. +..+++|++|++++|.+...+
T Consensus 140 ~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 140 ELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCG
T ss_pred ECCCCccCCCh--hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccc
Confidence 99999988743 48899999999997 44443 5588999999999999988754 678999999999999998876
Q ss_pred HHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCC
Q 011674 158 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 237 (480)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 237 (480)
+ +..+++|+.|++++|.+..++.+..+++|++|++++|.+....+ +..+ ++|+.|++++|.++...+ +..+
T Consensus 216 ~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~l 286 (466)
T 1o6v_A 216 P---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISP---LAGL 286 (466)
T ss_dssp G---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGG---GTTC
T ss_pred c---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-CCCCEEECCCCccCcccc---ccCC
Confidence 5 44689999999999999999899999999999999999987654 5555 899999999999998766 3579
Q ss_pred CCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccc
Q 011674 238 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP 317 (480)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (480)
++|+.|++++|++.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--------------VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--------------GGGCTTCCEEECCSSCCCCC--GG
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--------------hccCccCCEeECCCCccCCc--hh
Confidence 999999999999998655 7899999999999999987642 57899999999999999885 46
Q ss_pred ccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCccc
Q 011674 318 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 362 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 362 (480)
+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 8899999999999999998765 889999999999999998743
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=325.05 Aligned_cols=381 Identities=22% Similarity=0.225 Sum_probs=264.0
Q ss_pred cEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCH-HHHhhccCCCCCCEEEcc
Q 011674 5 KELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLW 83 (480)
Q Consensus 5 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~ 83 (480)
+..+.+++ .++..+. ..++|++|+|++|.+++..+..|.++++|++|++++|...+ ..+.+|.++++|++|+++
T Consensus 7 ~~~dcs~~-~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFC-NLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCC-CSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCC-CCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 35666776 4664433 46899999999999999888899999999999999996544 447889999999999999
Q ss_pred CCcCCchhhHhhcCCCCCcEEEccccCCCC-------CCCCCCCCEEEcCCCcccchh--ccCCCCCCccEEEccCCCCC
Q 011674 84 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-------LPNISSLECLNLSNCTIDSIL--EGNENKAPLAKISLAGTTFI 154 (480)
Q Consensus 84 ~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-------l~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~ 154 (480)
+|.+.+..|.+|.++++|++|++++|.+.+ +..+++|++|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999989999999999999999999875 457899999999999998754 45779999999999999886
Q ss_pred ChhHHHhhhcC--CC------------------------------ceEEEccCCccCcc--h------------------
Q 011674 155 NEREAFLYIET--SL------------------------------LSFLDVSNSSLSRF--C------------------ 182 (480)
Q Consensus 155 ~~~~~~~~~~~--~~------------------------------L~~L~l~~~~l~~~--~------------------ 182 (480)
...+.. +..+ ++ |+.|++++|.+... .
T Consensus 162 ~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 532211 1111 23 56666666643321 0
Q ss_pred ------------------hhcc--CCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcE
Q 011674 183 ------------------FLTQ--MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 242 (480)
Q Consensus 183 ------------------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 242 (480)
.+.. .++|+.|++++|.+....+..+..+ ++|+.|++++|.+....+..+ ..+++|++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~ 318 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAF-YGLDNLQV 318 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTT-TTCSSCCE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHh-cCCCCCCE
Confidence 0111 2567777777777776555555555 788888888888887766655 56888888
Q ss_pred EEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccch----------hh-------------------------
Q 011674 243 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET----------DL------------------------- 287 (480)
Q Consensus 243 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~----------~~------------------------- 287 (480)
|++++|.+++..+..|..+++|+.|++++|.+....+...... ..
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 8888888887777778888888888888888776654421100 00
Q ss_pred -----------------hhcHHHhhcCCCCCEEeCCCCCcccccc------------------------------ccccc
Q 011674 288 -----------------VLSLTALQNLNHLERLNLEQTQVSDATL------------------------------FPLST 320 (480)
Q Consensus 288 -----------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~------------------------------~~~~~ 320 (480)
+.....+..+++|++|++++|++++..+ ..+..
T Consensus 399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478 (844)
T ss_dssp CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence 0011123345555555555555442211 12334
Q ss_pred cccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCC-------------------CCCCCcEEEcCCCc
Q 011674 321 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK-------------------PPRSLKLLDLHGGW 381 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-------------------~~~~L~~l~l~~n~ 381 (480)
+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+. .+.+|+.+++++|+
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCC
Confidence 55566666666666555555566777777777777777665443322 12356777777778
Q ss_pred ccCHHHHHHHHH
Q 011674 382 LLTEDAILQFCK 393 (480)
Q Consensus 382 ~~~~~~~~~~~~ 393 (480)
+.|++...++..
T Consensus 559 ~~C~c~~~~f~~ 570 (844)
T 3j0a_A 559 FICECELSTFIN 570 (844)
T ss_dssp CCCSSSCCSHHH
T ss_pred cccccccHHHHH
Confidence 777776544433
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.3e-34 Score=272.03 Aligned_cols=304 Identities=20% Similarity=0.303 Sum_probs=205.8
Q ss_pred CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 25 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
.+++|++|+++++.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. .++..+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~---- 111 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN---- 111 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT----
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc----
Confidence 4555666666665555421 25555666666666655554432 55555666666655555542 23444444
Q ss_pred EccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhh
Q 011674 105 NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 184 (480)
Q Consensus 105 ~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 184 (480)
|++|++++|.+..++. +..+++|+.|++++|......+. +..+++|++|++++|.+...+.+
T Consensus 112 ---------------L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~ 173 (347)
T 4fmz_A 112 ---------------LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPI 173 (347)
T ss_dssp ---------------CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGG
T ss_pred ---------------CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhh
Confidence 4555555555444444 44556666666666643332222 34667777777777777766667
Q ss_pred ccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCc
Q 011674 185 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 264 (480)
Q Consensus 185 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 264 (480)
..+++|++|++++|.+..... +..+ ++|+.|++++|.+.+... +..+++|++|++++|.+++..+ +..+++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 777777777777777765443 4444 777888888877776655 2467888888888888876654 7788888
Q ss_pred cEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcC
Q 011674 265 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 344 (480)
Q Consensus 265 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 344 (480)
++|++++|.+++. . .+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..
T Consensus 246 ~~L~l~~n~l~~~--~------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 246 TWLEIGTNQISDI--N------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CEEECCSSCCCCC--G------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred CEEECCCCccCCC--h------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 8888888887764 2 477888899999999988875 45778889999999999988888888888
Q ss_pred CCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 345 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 345 l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
+++|++|++++|.+++..+ +..+++|++|++++|++
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred cccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 9999999999999887655 66788999999999985
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=294.62 Aligned_cols=326 Identities=20% Similarity=0.181 Sum_probs=244.2
Q ss_pred cEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcccc
Q 011674 30 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 109 (480)
Q Consensus 30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n 109 (480)
+.++.+++.++.+ |..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4566666666543 2222 346777777777777666667777777777777777777666666666666666666666
Q ss_pred CCCCCC-----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--h
Q 011674 110 GVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--C 182 (480)
Q Consensus 110 ~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~ 182 (480)
.++.++ .+++|++|++++|.+..+++. .+..+++|+.|++++|.+..+ .
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDY------------------------MFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTT------------------------TTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChh------------------------HccccccCCEEECCCCccceeChh
Confidence 655433 344555555555555443221 123455666666666665554 3
Q ss_pred hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCC
Q 011674 183 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 262 (480)
Q Consensus 183 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 262 (480)
.+..+++|++|++++|.++......+..+ ++|+.|++++|.+.......+ ..+++|+.|++++|...+..+..+....
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCc
Confidence 56677888888888888877777777777 888888888888887766555 5688999999999876655444455556
Q ss_pred CccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhh
Q 011674 263 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 342 (480)
Q Consensus 263 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 342 (480)
+|+.|++++|.+++.+.. .+..+++|++|++++|.+.+..+..+..+++|++|+|++|++.+..+..+
T Consensus 225 ~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYL------------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCSEEEEESSCCCSCCHH------------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred cccEEECcCCcccccCHH------------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 899999999999877655 68899999999999999998888889999999999999999999888889
Q ss_pred cCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 343 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 343 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
..+++|++|++++|.+++.....+..+++|++|++++|++.|++...|+.....
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 999999999999999999888888889999999999999999999988876544
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-34 Score=273.80 Aligned_cols=300 Identities=23% Similarity=0.331 Sum_probs=217.6
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|++++| .++.. +.+..+++|++|++++|.+++..+ +.++++|++|++++|.+++. ..+.++++|++|
T Consensus 43 l~~L~~L~l~~~-~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCC-ccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 468999999999 56643 458899999999999999998655 89999999999999998875 479999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCC-C---CCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCCh
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-K---LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE 156 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~-~---l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 156 (480)
++++|.+.+..+ +..+++|++|++++|... . +..+++|++|++++|.+..+
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------------- 170 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV----------------------- 170 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-----------------------
Confidence 999999987544 777777777777777322 1 23444555555555544433
Q ss_pred hHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcC
Q 011674 157 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 236 (480)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 236 (480)
+. +..+++|+.|++++|.+..++.+..+++|+.+++++|.+..... +..+ ++|++|++++|.++..+. +..
T Consensus 171 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~ 241 (347)
T 4fmz_A 171 TP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LAN 241 (347)
T ss_dssp GG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTT
T ss_pred hh---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhc
Confidence 32 33456666666666666666556666666777776666665443 3444 667777777777766554 246
Q ss_pred CCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccc
Q 011674 237 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 316 (480)
Q Consensus 237 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 316 (480)
+++|++|++++|.+++. ..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+..+.
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S------------VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h------------hhcCCCCCCEEECcCCcCCCcChh
Confidence 77778888877777764 3467777888888888877765 1 467778888888888888777777
Q ss_pred cccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccC
Q 011674 317 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 359 (480)
Q Consensus 317 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 359 (480)
.+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77888888888888888877654 677888888888888765
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-34 Score=292.49 Aligned_cols=358 Identities=18% Similarity=0.186 Sum_probs=280.1
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEE
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD 81 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 81 (480)
+...+.+.+++ .++..+. .+ .++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+
T Consensus 5 ~~~~~c~~~~~-~l~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSR-SFTSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTS-CCSSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCC-ccccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 34445667766 5664433 22 37999999999999998788899999999999999999998889999999999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCC------CCCCCCCEEEcCCCc-ccchhc-cCCCCCCccEEEccCCCC
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL------PNISSLECLNLSNCT-IDSILE-GNENKAPLAKISLAGTTF 153 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~L~l~~~~~ 153 (480)
+++|.+++..+.+++++++|++|++++|.++.+ ..+++|++|++++|. +..++. .+..+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999999998888899999999999999998753 368899999999998 667764 567999999999999999
Q ss_pred CChhHHHhhhcCCCceEEEccCCccCcch--hhccCCCCCeeeCcCCCCCCh---------------------------h
Q 011674 154 INEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDD---------------------------S 204 (480)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~~---------------------------~ 204 (480)
.+..+. .+..+++|+.|+++.|.+...+ .+..+++|++|++++|.+... .
T Consensus 161 ~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 865432 3457899999999999987763 335688999999998877652 1
Q ss_pred HHHHH--------------------------------------------------------------hhcCCCcEEEccC
Q 011674 205 VEMVA--------------------------------------------------------------CVGANLRNLNLSN 222 (480)
Q Consensus 205 ~~~~~--------------------------------------------------------------~~~~~L~~L~L~~ 222 (480)
+..+. ....+|+.|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 11111 1114566677777
Q ss_pred CCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHH---hhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCC
Q 011674 223 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH 299 (480)
Q Consensus 223 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (480)
|.+...+...+ ..+++|+.|++++|.+++..+.. +..+++|+.|++++|.+++..+. -..+..+++
T Consensus 320 n~l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~l~~ 388 (549)
T 2z81_A 320 SKVFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT----------GEILLTLKN 388 (549)
T ss_dssp SCCCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH----------HHHGGGCTT
T ss_pred CccccCCHHHH-hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc----------hhhhhcCCC
Confidence 76665554433 46899999999999998866543 56789999999999998876431 015788999
Q ss_pred CCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCC
Q 011674 300 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 379 (480)
Q Consensus 300 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~ 379 (480)
|++|++++|+++. .|..+..+++|++|++++|.++.... .+ .++|++|++++|++++.. ..+++|++|++++
T Consensus 389 L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 389 LTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp CCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred CCEEECCCCCCcc-CChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 9999999999986 46677888999999999998876432 11 257888888888887642 4567888888888
Q ss_pred Cccc
Q 011674 380 GWLL 383 (480)
Q Consensus 380 n~~~ 383 (480)
|.+.
T Consensus 461 N~l~ 464 (549)
T 2z81_A 461 NKLK 464 (549)
T ss_dssp SCCS
T ss_pred CccC
Confidence 8764
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=294.03 Aligned_cols=336 Identities=16% Similarity=0.208 Sum_probs=270.0
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCH-HHHhhccCCCCCCE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEY 79 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~ 79 (480)
+++|++|+|++| .++...+..|.++++|++|++++|.++... .. .+++|++|++++|.+++ ..|..|+++++|++
T Consensus 44 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 44 LSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS-CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp CTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEE-CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred cccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecC-cc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 578999999999 688888889999999999999999998643 33 89999999999999987 35789999999999
Q ss_pred EEccCCcCCchhhHhhcCCCCC--cEEEccccCC--C-----CCCC----------------------------------
Q 011674 80 LDLWGSQVSNRGAAVLKMFPRL--SFLNLAWTGV--T-----KLPN---------------------------------- 116 (480)
Q Consensus 80 L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~n~l--~-----~l~~---------------------------------- 116 (480)
|++++|.+++ ..+..+++| ++|++++|.+ . .++.
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 9999999886 345666777 9999988877 1 1222
Q ss_pred -------------------------------------------------CCCCCEEEcCCCccc-chhccC-----CCCC
Q 011674 117 -------------------------------------------------ISSLECLNLSNCTID-SILEGN-----ENKA 141 (480)
Q Consensus 117 -------------------------------------------------~~~L~~L~l~~~~l~-~~~~~~-----~~~~ 141 (480)
+++|++|++++|.+. .+|..+ ..++
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 125666777777666 677776 6777
Q ss_pred CccEEEccCCCCCChhHHHhh--hcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEE
Q 011674 142 PLAKISLAGTTFINEREAFLY--IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 219 (480)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 219 (480)
.|+.+++++|.+ .++..... ....+|+.|++++|.+........+++|++|++++|.+++..+..+..+ ++|++|+
T Consensus 277 ~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ 354 (520)
T 2z7x_B 277 ALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLI 354 (520)
T ss_dssp EEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEE
T ss_pred eeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEE
Confidence 888888888777 44421111 1226799999999988777655789999999999999998777777776 8999999
Q ss_pred ccCCCCCcchH-HHHhcCCCCCcEEEccCCCCCh-HHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcC
Q 011674 220 LSNTRFSSAGV-GILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 297 (480)
Q Consensus 220 L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 297 (480)
+++|.+++.+. ...+..+++|++|++++|.+++ .....+..+++|+.|++++|.+++..+. .+.
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~-- 420 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR------------CLP-- 420 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG------------SCC--
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh------------hhc--
Confidence 99999997532 2233679999999999999998 5444577889999999999999876544 222
Q ss_pred CCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 298 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
++|++|++++|+++. .|..+..+++|++|++++|+++......+..+++|++|++++|.+.+
T Consensus 421 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 699999999999985 46666699999999999999997655558899999999999999865
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-34 Score=277.39 Aligned_cols=311 Identities=18% Similarity=0.256 Sum_probs=226.5
Q ss_pred CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 25 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
.++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35777888888877777666667777888888888887777666677778888888888887777767777777777777
Q ss_pred EccccCCCCCC-----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccC
Q 011674 105 NLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 179 (480)
Q Consensus 105 ~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 179 (480)
++++|.++.++ .+++|++|++++|.+..+++. .+..+++|++|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD------------------------TFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT------------------------TTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh------------------------hccCCCCCCEEECCCCcCC
Confidence 77766666543 345555666665555544332 1224455555555555554
Q ss_pred cchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhh
Q 011674 180 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 259 (480)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 259 (480)
.. .+..+++|+.|++++|.++... ..++|++|++++|.+...+. ..+++|+.|++++|.+++. ..+.
T Consensus 179 ~~-~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 179 HV-DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp BC-CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred cc-ccccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHc
Confidence 44 2445566666666666665431 11567788888877776643 2357899999999988875 4678
Q ss_pred cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhH
Q 011674 260 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 339 (480)
Q Consensus 260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 339 (480)
.+++|++|++++|.+.+..+. .+..+++|++|++++|++++. +..+..+++|++|++++|.+... +
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~ 311 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-E 311 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-G
T ss_pred CCCCccEEECCCCcCCCcChh------------HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-C
Confidence 889999999999999887776 688999999999999999875 55567789999999999999875 4
Q ss_pred HhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHH
Q 011674 340 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 389 (480)
Q Consensus 340 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 389 (480)
..+..+++|++|++++|.++... +..+++|++|++++|++.+++...
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred ccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHH
Confidence 45778899999999999998764 566789999999999987765433
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=283.20 Aligned_cols=313 Identities=16% Similarity=0.151 Sum_probs=252.3
Q ss_pred cEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccC
Q 011674 5 KELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 84 (480)
Q Consensus 5 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 84 (480)
+.++.++. .++..+. .+ .+++++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~-~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSC-CCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 46677666 4554432 22 46899999999999998888899999999999999999998889999999999999999
Q ss_pred CcCCchhhHhhcCCCCCcEEEccccCCCCC-----CCCCCCCEEEcCCCcccchhc-cCCCCCCccEEEccCCCCCChhH
Q 011674 85 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINERE 158 (480)
Q Consensus 85 ~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 158 (480)
|.++...+..|.++++|++|++++|.+..+ ..+++|++|++++|.+..++. .+..+++|++|++++|.+..++.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999987777889999999999999998753 478899999999999987655 45589999999999999987765
Q ss_pred HHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcC
Q 011674 159 AFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 236 (480)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 236 (480)
. .+.++++|+.|++++|.+..+ ..+..+++|++|++++|......+...... .+|++|++++|.++..+...+ ..
T Consensus 170 ~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~ 246 (477)
T 2id5_A 170 E-ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAV-RH 246 (477)
T ss_dssp H-HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHH-TT
T ss_pred h-HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHh-cC
Confidence 3 355789999999999998877 367788899999999887655444333333 578888888888887766555 56
Q ss_pred CCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccc
Q 011674 237 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 316 (480)
Q Consensus 237 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 316 (480)
+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+. .|..+++|++|++++|.++...+.
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY------------AFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT------------TBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH------------HhcCcccCCEEECCCCcCceeCHh
Confidence 78888888888888877666777788888888888888777665 677788888888888888877777
Q ss_pred cccccccCceeecCCCCCCh
Q 011674 317 PLSTFKELIHLSLRNASLTD 336 (480)
Q Consensus 317 ~~~~~~~L~~L~L~~n~l~~ 336 (480)
.+..+++|++|++++|.+..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GBSCGGGCCEEECCSSCEEC
T ss_pred HcCCCcccCEEEccCCCccC
Confidence 77778888888888887653
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-33 Score=285.30 Aligned_cols=316 Identities=17% Similarity=0.239 Sum_probs=220.5
Q ss_pred CCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEE
Q 011674 26 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 105 (480)
Q Consensus 26 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 105 (480)
+++++.+++++|.+...++..|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46667777777777666666666777777777777777766666677777777777777777766666666666666666
Q ss_pred ccccCCCCCCCCCCCCEEEcCCCcccchhccC-CCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhh
Q 011674 106 LAWTGVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 184 (480)
Q Consensus 106 l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 184 (480)
+++|.++.+ |..+ ..+++|+.|++++|.+.++++. .+..+++|++|++++|.+... .+
T Consensus 130 L~~n~l~~l-------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~~ 188 (597)
T 3oja_B 130 LERNDLSSL-------------------PRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-DL 188 (597)
T ss_dssp CCSSCCCCC-------------------CTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC-CG
T ss_pred eeCCCCCCC-------------------CHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc-Ch
Confidence 666655543 3332 2344444444444444433321 123455555555555555554 24
Q ss_pred ccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCc
Q 011674 185 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 264 (480)
Q Consensus 185 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 264 (480)
..+++|+.|++++|.+.... .+++|+.|++++|.+...+.. ..++|+.|++++|.+++. ..+..+++|
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~--~~l~~l~~L 256 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT--AWLLNYPGL 256 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhhhhhhhhhcccCcccccc------CCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCC--hhhccCCCC
Confidence 45666677777776665432 115677888888777765542 246888999999888864 567888999
Q ss_pred cEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcC
Q 011674 265 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 344 (480)
Q Consensus 265 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 344 (480)
+.|++++|.+.+..+. .|..+++|++|+|++|.++++ +..+..+++|+.|+|++|.+... +..+..
T Consensus 257 ~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~ 322 (597)
T 3oja_B 257 VEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQ 322 (597)
T ss_dssp SEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHH
T ss_pred CEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-Cccccc
Confidence 9999999999888776 688899999999999999884 55667789999999999999865 456788
Q ss_pred CCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHH
Q 011674 345 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 391 (480)
Q Consensus 345 l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 391 (480)
+++|+.|++++|.+++.. +..+++|+.|++++|++.|++...++
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 899999999999998764 45668999999999998777644443
No 34
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.2e-33 Score=275.75 Aligned_cols=361 Identities=23% Similarity=0.244 Sum_probs=280.9
Q ss_pred CCCCcEEEcCCCcCCHHHHHH-HcCCCCCCEEEcCCCCCCHH----HHhhccCCCCCCEEEccCCcCCchhhHhh-cCCC
Q 011674 26 ISTLEKLWLSETGLTADGIAL-LSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVSNRGAAVL-KMFP 99 (480)
Q Consensus 26 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~ 99 (480)
.++|++|+++++.+++..... +..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367899999999998876554 78999999999999999864 46677889999999999999987666554 3455
Q ss_pred ----CCcEEEccccCCCC---------CCCCCCCCEEEcCCCcccc-----hhccCC-CCCCccEEEccCCCCCChhH--
Q 011674 100 ----RLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDS-----ILEGNE-NKAPLAKISLAGTTFINERE-- 158 (480)
Q Consensus 100 ----~L~~L~l~~n~l~~---------l~~~~~L~~L~l~~~~l~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~-- 158 (480)
+|++|++++|.++. +..+++|++|++++|.+.. +...+. ..++|++|++++|.+.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999884 4588999999999999873 222323 46789999999999886432
Q ss_pred -HHhhhcCCCceEEEccCCccCcc--hhhc-----cCCCCCeeeCcCCCCCChh----HHHHHhhcCCCcEEEccCCCCC
Q 011674 159 -AFLYIETSLLSFLDVSNSSLSRF--CFLT-----QMKALEHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFS 226 (480)
Q Consensus 159 -~~~~~~~~~L~~L~l~~~~l~~~--~~~~-----~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~ 226 (480)
...+..+++|+.|++++|.+... ..+. ..++|++|++++|.++... +..+..+ ++|++|++++|.++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCC
Confidence 12345689999999999998764 2222 3669999999999999865 4444455 99999999999998
Q ss_pred cchHHHHh----cCCCCCcEEEccCCCCChH----HHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHh-hcC
Q 011674 227 SAGVGILA----GHLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNL 297 (480)
Q Consensus 227 ~~~~~~~~----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 297 (480)
+.+...+. ..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.... .....+ ...
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~ 312 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--------LLCETLLEPG 312 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--------HHHHHHTSTT
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--------HHHHHhccCC
Confidence 87654332 3588999999999999976 355666799999999999998754332 001112 233
Q ss_pred CCCCEEeCCCCCccccc----cccccccccCceeecCCCCCChhhHHhhcC-----CCCCCEEEecCCccCc----cccc
Q 011674 298 NHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTN----SGLG 364 (480)
Q Consensus 298 ~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~i~~----~~~~ 364 (480)
++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ ..+.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 69999999999998753 445567799999999999998876655543 7899999999999987 3445
Q ss_pred CCCCCCCCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 365 SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 365 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
.+..+++|++|++++|++ ++.+...+.+..+
T Consensus 393 ~l~~~~~L~~L~l~~N~i-~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCL-GDAGILQLVESVR 423 (461)
T ss_dssp HHHHCCCCCEEECCSSSC-CHHHHHHHHHHHT
T ss_pred HHHhCCCccEEECCCCCC-CHHHHHHHHHHhc
Confidence 556679999999999985 7777777776544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.1e-33 Score=271.52 Aligned_cols=307 Identities=18% Similarity=0.175 Sum_probs=226.3
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
++++++|+++++ .++..+...+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|+++++|++|
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 368999999999 6887777788999999999999999999877889999999999999999999888899999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCC
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 155 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (480)
++++|.++...+..+..+++|++|++++|.+..++ .+++|++|++++|.+..++ +..+++|+.|++++|.+..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence 99999999877777899999999999999988654 5788999999988877653 2344555555555555443
Q ss_pred hhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhc
Q 011674 156 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 235 (480)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 235 (480)
+ ...+.|++|++++|.+..... ..+++|+.|++++|.+++.. .+.
T Consensus 201 -------------------------~---~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~---~l~ 245 (390)
T 3o6n_A 201 -------------------------L---AIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDTA---WLL 245 (390)
T ss_dssp -------------------------E---ECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCCG---GGG
T ss_pred -------------------------c---CCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCcccH---HHc
Confidence 2 122345555555554443211 11155666666666666542 224
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 315 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (480)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+++.... +..+++|++|++++|++... +
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~l~~L~~L~L~~n~l~~~-~ 311 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------------GQPIPTLKVLDLSHNHLLHV-E 311 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-------------SSCCTTCCEEECCSSCCCCC-G
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-------------cCCCCCCCEEECCCCcceec-C
Confidence 567777777777777766666677777777777777777665332 45667777777777777653 4
Q ss_pred ccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCccc
Q 011674 316 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 362 (480)
Q Consensus 316 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 362 (480)
..+..+++|++|++++|.+++.. +..+++|++|++++|.+....
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred ccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence 45666777788888777776653 566777888888887776643
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-33 Score=286.29 Aligned_cols=335 Identities=17% Similarity=0.199 Sum_probs=254.1
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHH-HHhhccCCCCCCE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEY 79 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~ 79 (480)
+++|++|+|++| .++...+..|.++++|++|++++|.++... .. .+++|++|++++|.+++. .|..|+++++|++
T Consensus 75 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 75 LSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEEC-SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred CCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccC-cc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 578999999999 788888888999999999999999998643 33 899999999999999874 3578999999999
Q ss_pred EEccCCcCCchhhHhhcCCCCC--cEEEccccCC--CCC-----C--------------------------CCCCCCEEE
Q 011674 80 LDLWGSQVSNRGAAVLKMFPRL--SFLNLAWTGV--TKL-----P--------------------------NISSLECLN 124 (480)
Q Consensus 80 L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~n~l--~~l-----~--------------------------~~~~L~~L~ 124 (480)
|++++|.+.... +..+++| ++|++++|.+ +.. + .+++|+.++
T Consensus 151 L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 151 LGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 999999998643 4444555 9999999887 221 1 123344444
Q ss_pred cCCC-------------------------------------------------------ccc-chhccC-----CCCCCc
Q 011674 125 LSNC-------------------------------------------------------TID-SILEGN-----ENKAPL 143 (480)
Q Consensus 125 l~~~-------------------------------------------------------~l~-~~~~~~-----~~~~~L 143 (480)
+++| .+. .+|..+ ..++.|
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 4443 333 333333 223333
Q ss_pred cEEEccCCCCCChhHHHh--hhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEcc
Q 011674 144 AKISLAGTTFINEREAFL--YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 221 (480)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 221 (480)
+.+++..+.+ .++.... +....++++|++++|.+........+++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 308 ~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~ 385 (562)
T 3a79_B 308 MIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQ 385 (562)
T ss_dssp EEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECC
T ss_pred ehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc-CCCCEEECC
Confidence 3333333333 2221111 11235688999999988776655789999999999999998777777666 899999999
Q ss_pred CCCCCcchH-HHHhcCCCCCcEEEccCCCCCh-HHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcC-C
Q 011674 222 NTRFSSAGV-GILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL-N 298 (480)
Q Consensus 222 ~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~ 298 (480)
+|.++..+. ...+..+++|++|++++|.+++ .....+..+++|+.|++++|.+++..+. .+ +
T Consensus 386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~l~~ 450 (562)
T 3a79_B 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---------------CLPP 450 (562)
T ss_dssp SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS---------------SCCT
T ss_pred CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh---------------hhcC
Confidence 999998543 2334679999999999999987 4444577889999999999999876443 33 6
Q ss_pred CCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 299 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
+|++|++++|+++.+ |..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+
T Consensus 451 ~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 451 KVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred cCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 999999999999864 5555599999999999999997655458899999999999998764
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-32 Score=268.11 Aligned_cols=307 Identities=20% Similarity=0.205 Sum_probs=173.0
Q ss_pred hhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCC
Q 011674 22 HLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL 101 (480)
Q Consensus 22 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L 101 (480)
.+.++++|++|++++|.+++. + .+..+++|++|++++|.+++. .++.+++|++|++++|.+++. + ++.+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 445566666666666666653 2 456666666666666666653 256666666666666666653 1 5566666
Q ss_pred cEEEccccCCCCCC--CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccC
Q 011674 102 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 179 (480)
Q Consensus 102 ~~L~l~~n~l~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 179 (480)
++|++++|.+++++ .+++|++|++++|.+..++ +..+++|++|++++|...+.. .+..+++|+.|++++|.++
T Consensus 109 ~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 109 TYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccc
Confidence 66666666666543 5566666666666666553 456666666666666332211 2335666666666666666
Q ss_pred cchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhh
Q 011674 180 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS 259 (480)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 259 (480)
.++ +..+++|+.|++++|.++... +..+ ++|+.|++++|.+++.+ ...+++|+.|++++|.+++.. +.
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l-~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~---~~ 251 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNNITKLD---LNQN-IQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD---VS 251 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred eec-cccCCCCCEEECcCCcCCeec---cccC-CCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC---HH
Confidence 654 556666666666666666542 3333 66666666666666643 245666667777666666543 23
Q ss_pred cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccc--------cccccccCceeecCC
Q 011674 260 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF--------PLSTFKELIHLSLRN 331 (480)
Q Consensus 260 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~L~~ 331 (480)
.+++|+.|+++.+.+...........+.+ .+..+++|+.|++++|...+..+. .+..+++|++|++++
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~----~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYF----QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEE----ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCcc----cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 44455544444443322210000000000 134567777777777764433222 133445666666666
Q ss_pred CCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 332 ASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 332 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
|++++. .+..+++|+.|++++|++++
T Consensus 328 N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 328 TELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred Cccccc---ccccCCcCcEEECCCCCCCC
Confidence 666553 25556666666666666554
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=8.3e-33 Score=283.64 Aligned_cols=391 Identities=16% Similarity=0.143 Sum_probs=261.6
Q ss_pred CCCCcEEecCCCCCCCh-------------hhHHh-hhCCCCCcEEEcCCCcCCHHHHHHHcC-CC-CCCEEEcCCCC-C
Q 011674 1 MTCLKELDLSRCVKVTD-------------AGMKH-LLSISTLEKLWLSETGLTADGIALLSS-LQ-NLSVLDLGGLP-V 63 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~-------------~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~L~~~~-~ 63 (480)
+++|++|+|++|..+.+ ..... ..++++|++|+|++|.+++..+..+.. ++ +|++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 46788888877543221 12222 236788888888888887776666665 33 48888888775 3
Q ss_pred CHH-HHhhccCCCCCCEEEccCCcCCch----hhHhhcCCCCCcEEEccccCCCCCC---------CCCCCCEEEcCCCc
Q 011674 64 TDL-VLRSLQVLTKLEYLDLWGSQVSNR----GAAVLKMFPRLSFLNLAWTGVTKLP---------NISSLECLNLSNCT 129 (480)
Q Consensus 64 ~~~-~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~l~~l~---------~~~~L~~L~l~~~~ 129 (480)
... .+....++++|++|++++|.+++. .+..+..+++|++|++++|.++.+. .+++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 322 223345778888888888876554 3344567788888888888776322 56788888888877
Q ss_pred ccchhccCCCCCCccEEEcc---------------------------CCCCCChhHHHhhhcCCCceEEEccCCccCcc-
Q 011674 130 IDSILEGNENKAPLAKISLA---------------------------GTTFINEREAFLYIETSLLSFLDVSNSSLSRF- 181 (480)
Q Consensus 130 l~~~~~~~~~~~~L~~L~l~---------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 181 (480)
+..++..+..+++|++|.++ ++.....+. .+..+++|++|++++|.+...
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHH
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHH
Confidence 77666555566666666664 332222333 233677888888888886554
Q ss_pred --hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccC-----------CCCCcchHHHHhcCCCCCcEEEccCC
Q 011674 182 --CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFSSAGVGILAGHLPNLEILSLSGT 248 (480)
Q Consensus 182 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~L~~L~l~~n 248 (480)
..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.+++.+...+...+++|++|++..+
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 235778888888888 4455555555555558888888883 57777666666566888888888888
Q ss_pred CCChHHHHHhhc-CCCccEEEcc----CccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCC--cccccccccc-c
Q 011674 249 QIDDYAISYMSM-MPSLKFIDIS----NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFPLS-T 320 (480)
Q Consensus 249 ~l~~~~~~~~~~-~~~L~~L~l~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~ 320 (480)
.+++..+..++. +++|+.|+++ .+.+++.+... .....+.++++|++|+++.|. +++.....+. .
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 888877777765 8888888886 44555432110 001136678888898887543 5554444443 3
Q ss_pred cccCceeecCCCCCChhh-HHhhcCCCCCCEEEecCCccCcccccCC-CCCCCCcEEEcCCCcccCHHHHHHHHHhCCce
Q 011674 321 FKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRI 398 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~l 398 (480)
+++|++|++++|++++.. +..+..+++|++|++++|.+++.+...+ ..+++|++|++++|+ +++.++..+.+..|.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 788999999988888744 3445778889999999988876544332 356889999999998 5766777777777877
Q ss_pred eeee
Q 011674 399 EVWH 402 (480)
Q Consensus 399 ~~~~ 402 (480)
.+..
T Consensus 541 ~~~~ 544 (592)
T 3ogk_B 541 NIEL 544 (592)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-32 Score=279.67 Aligned_cols=305 Identities=18% Similarity=0.177 Sum_probs=206.0
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++++.|++++| .++..+...+.++++|++|++++|.+++..+..|+.+++|++|+|++|.+.+..+..|+++++|++|
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 367899999999 6887888888999999999999999999888899999999999999999999888899999999999
Q ss_pred EccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCC
Q 011674 81 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 155 (480)
Q Consensus 81 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (480)
++++|.+++..+..|..+++|++|++++|.+..++ .+++|++|++++|.+..++ +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~- 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-
Confidence 99999999877777888888888888888777543 4566666776666665543 223445555555555443
Q ss_pred hhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhc
Q 011674 156 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 235 (480)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 235 (480)
.+ ...+.|+.|++++|.+...... .+++|+.|++++|.+++.. .+.
T Consensus 206 ------------------------~l---~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~~---~l~ 251 (597)
T 3oja_B 206 ------------------------TL---AIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTA---WLL 251 (597)
T ss_dssp ------------------------EE---ECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCCG---GGG
T ss_pred ------------------------cc---cCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCCh---hhc
Confidence 32 1223445555555544432211 1145555566555555431 123
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 315 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (480)
.+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.+.. +..+++|++|+|++|.+.. .|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------------~~~l~~L~~L~Ls~N~l~~-i~ 317 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-------------GQPIPTLKVLDLSHNHLLH-VE 317 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-------------SSCCTTCCEEECCSSCCCC-CG
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-------------cccCCCCcEEECCCCCCCc-cC
Confidence 456666666666666665555566666666666666666554322 3455666666666666654 34
Q ss_pred ccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 316 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 316 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
..+..+++|+.|+|++|.+.+.. +..+++|+.|++++|.+.+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 44555666666666666665542 4555666666666666544
No 40
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=1.4e-31 Score=274.61 Aligned_cols=390 Identities=20% Similarity=0.234 Sum_probs=289.6
Q ss_pred CCCCcEEecCCCCCCChhh-------------H-HhhhCCCCCcEEEcCCCcCCHHHHHHHc-CCCCCCEEEcCCC-CCC
Q 011674 1 MTCLKELDLSRCVKVTDAG-------------M-KHLLSISTLEKLWLSETGLTADGIALLS-SLQNLSVLDLGGL-PVT 64 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~-------------~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~ 64 (480)
+++|++|+|++|..+.+.. . .....+++|++|++++|.+++..+..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4789999999885443221 1 2234788999999999999988777776 7899999999998 555
Q ss_pred HH-HHhhccCCCCCCEEEccCCcCCchhhHhhc----CCCCCcEEEccccC--CCC--C----CCCCCCCEEEcCCC-cc
Q 011674 65 DL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLK----MFPRLSFLNLAWTG--VTK--L----PNISSLECLNLSNC-TI 130 (480)
Q Consensus 65 ~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~----~l~~L~~L~l~~n~--l~~--l----~~~~~L~~L~l~~~-~l 130 (480)
.. .+..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +.. + ..+++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 54 334445899999999999987765544443 66799999999886 221 1 24689999999988 55
Q ss_pred cchhccCCCCCCccEEEccCCCC-------------------------------CChhHHHhhhcCCCceEEEccCCccC
Q 011674 131 DSILEGNENKAPLAKISLAGTTF-------------------------------INEREAFLYIETSLLSFLDVSNSSLS 179 (480)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~~~~-------------------------------~~~~~~~~~~~~~~L~~L~l~~~~l~ 179 (480)
..++..+..+++|++|.+..+.. ..++. .+..+++|++|++++|.+.
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG--GHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH--HHHhhCCCCEEEccCCCCC
Confidence 56666666777788887554421 11111 1225788999999999866
Q ss_pred cc---hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEc---------cCCCCCcchHHHHhcCCCCCcEEEccC
Q 011674 180 RF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILAGHLPNLEILSLSG 247 (480)
Q Consensus 180 ~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L---------~~n~l~~~~~~~~~~~l~~L~~L~l~~ 247 (480)
.. ..+..+++|++|++++| +.+.....++..+++|++|++ ..+.+++.....+...+++|+.|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 54 23568899999999988 555556666654589999998 335777777777766689999999999
Q ss_pred CCCChHHHHHhh-cCCCccEEEcc--C----ccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc
Q 011674 248 TQIDDYAISYMS-MMPSLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 320 (480)
Q Consensus 248 n~l~~~~~~~~~-~~~~L~~L~l~--~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 320 (480)
+.+++.....+. .+++|+.|+++ + +.++..+.. . .....+..+++|++|++++ .+++.....+..
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~-----~--~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD-----I--GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH-----H--HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh-----h--HHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 999987777776 68999999999 3 445432211 0 0011367889999999988 677665555555
Q ss_pred -cccCceeecCCCCCChhhHHhh-cCCCCCCEEEecCCccCcccccC-CCCCCCCcEEEcCCCcccCHHHHHHHHHhCCc
Q 011674 321 -FKELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLGS-FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 397 (480)
Q Consensus 321 -~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 397 (480)
+++|++|+|++|.+++.....+ ..+++|++|++++|.+++.+... +..+++|++|++++|++ +..++..+....|.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPK 532 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTT
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCC
Confidence 8999999999999988766665 67999999999999997766543 34479999999999996 88889999899998
Q ss_pred eeeee
Q 011674 398 IEVWH 402 (480)
Q Consensus 398 l~~~~ 402 (480)
+.+..
T Consensus 533 l~i~~ 537 (594)
T 2p1m_B 533 LNVEV 537 (594)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87653
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=5.5e-32 Score=279.90 Aligned_cols=344 Identities=22% Similarity=0.299 Sum_probs=258.4
Q ss_pred CCCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEE
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 80 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 80 (480)
+++|++|+|++| .++.....+|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+..|+++++|++|
T Consensus 75 l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 75 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153 (635)
T ss_dssp CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence 578999999999 7888888889999999999999999999888889999999999999999998877889999999999
Q ss_pred EccCCcCCch-hhHhhcCCCCCcEEEccccCCCCCC--------CCC------------------------CCCEEEcCC
Q 011674 81 DLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NIS------------------------SLECLNLSN 127 (480)
Q Consensus 81 ~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~l~~l~--------~~~------------------------~L~~L~l~~ 127 (480)
++++|.+.+. .+..+..+++|++|++++|.++++. .++ .++.+++.+
T Consensus 154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~ 233 (635)
T 4g8a_A 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 233 (635)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc
Confidence 9999998764 4677889999999999998876422 000 011111111
Q ss_pred C-------------------------------------------------------------------------------
Q 011674 128 C------------------------------------------------------------------------------- 128 (480)
Q Consensus 128 ~------------------------------------------------------------------------------- 128 (480)
|
T Consensus 234 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 313 (635)
T 4g8a_A 234 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSL 313 (635)
T ss_dssp CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEE
T ss_pred ccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccc
Confidence 1
Q ss_pred ---cccchhccCCCCCCccEEEccCCCCCChhH------------------HHhhhcCCCceEEEccCCccCcc------
Q 011674 129 ---TIDSILEGNENKAPLAKISLAGTTFINERE------------------AFLYIETSLLSFLDVSNSSLSRF------ 181 (480)
Q Consensus 129 ---~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~~~~~~~~L~~L~l~~~~l~~~------ 181 (480)
.+..++ .+.....++.|++.++.+..++. ...+..+++|+.+++++|.+...
T Consensus 314 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 314 VSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp ESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 000000 01122344555555544332211 01122456677777776665332
Q ss_pred ---------------------hhhccCCCCCeeeCcCCCCCChhH-HHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCC
Q 011674 182 ---------------------CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN 239 (480)
Q Consensus 182 ---------------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 239 (480)
..+..+++|+.+++..+....... ..+..+ .+++.++++.|.+.......+ ..++.
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-~~l~~l~ls~n~l~~~~~~~~-~~~~~ 470 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIF-NGLSS 470 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC-TTCCEEECTTSCCEECCTTTT-TTCTT
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc-ccccccccccccccccccccc-ccchh
Confidence 233445666666666654332221 223344 789999999999888776665 56899
Q ss_pred CcEEEccCCCCC-hHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccc
Q 011674 240 LEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 318 (480)
Q Consensus 240 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 318 (480)
++.|++++|.+. ...+..|..+++|+.|++++|.+++..+. .|.++++|++|+|++|++++..+..+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~------------~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH------------HHcCCCCCCEEECCCCcCCCCChhHH
Confidence 999999999744 45567788999999999999999998887 79999999999999999999988899
Q ss_pred cccccCceeecCCCCCChhhHHhhcCC-CCCCEEEecCCccCc
Q 011674 319 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVLTN 360 (480)
Q Consensus 319 ~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~i~~ 360 (480)
..+++|++|+|++|++++..+..+..+ ++|++|++++|.+..
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999999888888887 689999999998764
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.5e-31 Score=261.03 Aligned_cols=301 Identities=18% Similarity=0.165 Sum_probs=247.0
Q ss_pred HHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC--CCCCCCE
Q 011674 45 ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLEC 122 (480)
Q Consensus 45 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~~~~L~~ 122 (480)
..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++++ .+++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCE
Confidence 3567899999999999999886 3 799999999999999999985 3 789999999999999998754 7889999
Q ss_pred EEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCC
Q 011674 123 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD 202 (480)
Q Consensus 123 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~ 202 (480)
|++++|.+..++ +..+++|++|++++|.+.+++ +..+++|++|++++|...+.-.+..+++|++|++++|.++.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 999999999875 779999999999999998863 55789999999999953333367889999999999999988
Q ss_pred hhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccc
Q 011674 203 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 282 (480)
Q Consensus 203 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 282 (480)
.. +..+ ++|+.|++++|.++... ++.+++|+.|++++|++++. | +..+++|+.|++++|.+++.++.
T Consensus 185 l~---l~~l-~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~-- 251 (457)
T 3bz5_A 185 LD---VSQN-KLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVS-- 251 (457)
T ss_dssp CC---CTTC-TTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCT--
T ss_pred ec---cccC-CCCCEEECcCCcCCeec----cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHH--
Confidence 54 4555 89999999999999874 35789999999999999985 3 78899999999999999987443
Q ss_pred cchhhhhcHHHhhcCC-------CCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHH--------hhcCCCC
Q 011674 283 AETDLVLSLTALQNLN-------HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH--------QLSSLSK 347 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~l~~ 347 (480)
.+..++ +|+.|++++|.+.+..+ +..+++|+.|++++|...+..+. .+..+++
T Consensus 252 ----------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 252 ----------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp ----------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred ----------HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 233322 44555555555444333 46789999999999965432221 2567899
Q ss_pred CCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 348 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 348 L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
|++|++++|++++. .+..+++|+.|++++|.+..
T Consensus 320 L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 320 LVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCccccc---ccccCCcCcEEECCCCCCCC
Confidence 99999999999985 37788999999999999744
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.2e-32 Score=267.35 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=225.2
Q ss_pred CCCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCC-------------CCEEEcCCCCCCHHHH
Q 011674 2 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN-------------LSVLDLGGLPVTDLVL 68 (480)
Q Consensus 2 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~ 68 (480)
++|++|++++| .++ ..+..++++++|++|++++|.+.+..|..++++++ +++|++++|.+++..
T Consensus 11 ~~L~~L~l~~n-~l~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp- 87 (454)
T 1jl5_A 11 TFLQEPLRHSS-NLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP- 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC-
T ss_pred ccchhhhcccC-chh-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC-
Confidence 57999999999 575 55677999999999999999998888888887776 499999999987742
Q ss_pred hhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCC-CCCCEEEcCCCcccchhccCCCCCCccEEE
Q 011674 69 RSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKIS 147 (480)
Q Consensus 69 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 147 (480)
. -.++|++|++++|.+++ .|. ..++|++|++++|.+++++.. ++|++|++++|.+..+| .+..+++|++|+
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred C---CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 2 23799999999999987 443 347899999999999998876 69999999999999988 588999999999
Q ss_pred ccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCc
Q 011674 148 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 227 (480)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 227 (480)
+++|.+.+++.. .++|++|++++|.+..++.+..+++|++|++++|.++... ...++|++|++++|.+..
T Consensus 160 l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 160 VDNNSLKKLPDL-----PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-----DLPLSLESIVAGNNILEE 229 (454)
T ss_dssp CCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----CCCTTCCEEECCSSCCSS
T ss_pred CCCCcCcccCCC-----cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC-----CCcCcccEEECcCCcCCc
Confidence 999999876542 4689999999999999988999999999999999887532 122689999999998886
Q ss_pred chHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCC
Q 011674 228 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 307 (480)
Q Consensus 228 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 307 (480)
.+ .+ ..+++|++|++++|++++... .+++|+.|++++|.+.+.+.. .++|++|++++
T Consensus 230 lp--~~-~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----------------~~~L~~L~ls~ 286 (454)
T 1jl5_A 230 LP--EL-QNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----------------PQSLTFLDVSE 286 (454)
T ss_dssp CC--CC-TTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCS
T ss_pred cc--cc-CCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----------------cCcCCEEECcC
Confidence 55 23 578999999999998876321 347888899988888764321 25666666666
Q ss_pred CCccccccc--c-------------cccc-ccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCC
Q 011674 308 TQVSDATLF--P-------------LSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 371 (480)
Q Consensus 308 n~l~~~~~~--~-------------~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 371 (480)
|.+++.... . +..+ ++|++|++++|++++.. . .+++|++|++++|.++.... .+++
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N~l~~lp~----~l~~ 358 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFNHLAEVPE----LPQN 358 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCCccccccc----hhhh
Confidence 666552110 0 0111 34555555555554421 1 13555555555555553221 2355
Q ss_pred CcEEEcCCCcc
Q 011674 372 LKLLDLHGGWL 382 (480)
Q Consensus 372 L~~l~l~~n~~ 382 (480)
|++|++++|++
T Consensus 359 L~~L~L~~N~l 369 (454)
T 1jl5_A 359 LKQLHVEYNPL 369 (454)
T ss_dssp CCEEECCSSCC
T ss_pred ccEEECCCCCC
Confidence 66666666654
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.6e-30 Score=254.56 Aligned_cols=321 Identities=19% Similarity=0.181 Sum_probs=248.9
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCC-CCCCEEE
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVL-TKLEYLD 81 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~ 81 (480)
++++|++++| .++..+. -.++|++|++++|.+++. | ..+++|++|++++|.+.+. ... ++|++|+
T Consensus 72 ~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l~~l-p---~~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~ 137 (454)
T 1jl5_A 72 QAHELELNNL-GLSSLPE----LPPHLESLVASCNSLTEL-P---ELPQSLKSLLVDNNNLKAL-----SDLPPLLEYLG 137 (454)
T ss_dssp TCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCCSSC-C---CCCTTCCEEECCSSCCSCC-----CSCCTTCCEEE
T ss_pred CCCEEEecCC-ccccCCC----CcCCCCEEEccCCcCCcc-c---cccCCCcEEECCCCccCcc-----cCCCCCCCEEE
Confidence 4788999998 5664322 247899999999999873 3 2458899999999988763 222 6999999
Q ss_pred ccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCC-CCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHH
Q 011674 82 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 160 (480)
Q Consensus 82 l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (480)
+++|.+++ .| .+..+++|++|++++|.+++++. ..+|++|++++|.+..+| .+..+++|+.|++++|.+.+++.
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~-- 212 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD-- 212 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC--
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC--
Confidence 99999997 45 58999999999999999998873 569999999999999987 57899999999999999987654
Q ss_pred hhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCC
Q 011674 161 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 240 (480)
Q Consensus 161 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 240 (480)
..++|++|++++|.+..++.+..+++|++|++++|.+..... ..++|+.|++++|.++..+. .+++|
T Consensus 213 ---~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-----~~~~L 279 (454)
T 1jl5_A 213 ---LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-----LPQSL 279 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-----CCTTC
T ss_pred ---CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-----ccCcC
Confidence 236899999999999988889999999999999999886321 23789999999999887542 35899
Q ss_pred cEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc
Q 011674 241 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 320 (480)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 320 (480)
+.|++++|.+++.. ...++|+.|++++|.+++... ..++|++|++++|+++++ +..
T Consensus 280 ~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i~~----------------~~~~L~~L~Ls~N~l~~l-p~~--- 335 (454)
T 1jl5_A 280 TFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLCD----------------LPPSLEELNVSNNKLIEL-PAL--- 335 (454)
T ss_dssp CEEECCSSCCSEES----CCCTTCCEEECCSSCCSEECC----------------CCTTCCEEECCSSCCSCC-CCC---
T ss_pred CEEECcCCccCccc----CcCCcCCEEECcCCcCCcccC----------------CcCcCCEEECCCCccccc-ccc---
Confidence 99999999998732 123789999999999886421 125899999999999874 332
Q ss_pred cccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc--ccccCCCCC-------------CCCcEEEcCCCccc
Q 011674 321 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPP-------------RSLKLLDLHGGWLL 383 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~--~~~~~~~~~-------------~~L~~l~l~~n~~~ 383 (480)
+++|++|++++|.++.... .+++|++|++++|.+++ ..+..+..+ ++|++|++++|++.
T Consensus 336 ~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 5899999999999987543 57899999999999988 455555554 78999999999864
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.6e-30 Score=262.59 Aligned_cols=343 Identities=13% Similarity=0.071 Sum_probs=234.4
Q ss_pred CCCCCcEEEcCCCcCCHH----HHHHHcCCCCCCEEEcCCCCCC----HHHHhhccCCCCCCEEEccCCcCCchhhHhhc
Q 011674 25 SISTLEKLWLSETGLTAD----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK 96 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~----~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~ 96 (480)
++++|++|+|++|.+++. .+..+..+++|++|++++|.++ ...+..+.++++|++|++++|.+.+ .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344444444444443322 2223334455555555544443 2333334455555555555555443 334455
Q ss_pred CCCCCcEEEccccCC--------CCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCc
Q 011674 97 MFPRLSFLNLAWTGV--------TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 168 (480)
Q Consensus 97 ~l~~L~~L~l~~n~l--------~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (480)
.+++|++|+++.+.. ..+..+++|+.|+++++....+|..+..+++|++|++++|.+........+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 555555555543211 134466778888887776667787777899999999999997654443345689999
Q ss_pred eEEEccCCccCcc---hhhccCCCCCeeeCc-----------CCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHh
Q 011674 169 SFLDVSNSSLSRF---CFLTQMKALEHLDLS-----------SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 234 (480)
Q Consensus 169 ~~L~l~~~~l~~~---~~~~~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 234 (480)
+.|+++ +.+... .....+++|++|+++ .+.++......+...+++|++|+++.+.+++..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 999999 444332 234678999999999 36777776777666559999999999999998888876
Q ss_pred cCCCCCcEEEcc----CCCCChH-----HHHHhhcCCCccEEEccCcc--ccccccccccchhhhhcHHHhhcCCCCCEE
Q 011674 235 GHLPNLEILSLS----GTQIDDY-----AISYMSMMPSLKFIDISNTD--IKGFIQQVGAETDLVLSLTALQNLNHLERL 303 (480)
Q Consensus 235 ~~l~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 303 (480)
..+++|++|++. .|.+++. .+..+..+++|+.|+++.|. +++.... .....+++|++|
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~-----------~~~~~~~~L~~L 468 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS-----------YIGQYSPNVRWM 468 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH-----------HHHHSCTTCCEE
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH-----------HHHHhCccceEe
Confidence 669999999996 5677752 44556789999999998654 4443222 123458999999
Q ss_pred eCCCCCccccc-cccccccccCceeecCCCCCChhhH-HhhcCCCCCCEEEecCCccCcccccCCC-CCCCCcEEEcCCC
Q 011674 304 NLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGG 380 (480)
Q Consensus 304 ~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~l~l~~n 380 (480)
++++|.+++.. +..+..+++|++|++++|.+++... ..+..+++|++|++++|++++.+...+. .++.+....+..+
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999988743 3445788999999999999876543 3446799999999999999988766554 4577777666654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.5e-29 Score=238.23 Aligned_cols=286 Identities=17% Similarity=0.205 Sum_probs=150.6
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
++++++++++.++.. |..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|.++..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcccc-CccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 566677766666542 2211 2566666776666666555566666667777776666666556666666666666555
Q ss_pred ccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc----hh
Q 011674 108 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CF 183 (480)
Q Consensus 108 ~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~ 183 (480)
+|.++.+ |..+. ++|++|++++|.+...+.. .+.++++|+.|++++|.+... ..
T Consensus 109 ~n~l~~l-------------------~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 109 KNQLKEL-------------------PEKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp SSCCSBC-------------------CSSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred CCcCCcc-------------------Chhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhh
Confidence 5555544 33332 4555555555555544332 234566666666666665431 34
Q ss_pred hccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCC
Q 011674 184 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 263 (480)
Q Consensus 184 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 263 (480)
+..+++|++|++++|.++... .. ..++|++|++++|.+++..+..+..+++
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~-------------------------~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIP-------------------------QG----LPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCC-------------------------SS----CCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred ccCCCCcCEEECCCCccccCC-------------------------cc----ccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 555666666666666554321 10 1134444444444444444444444555
Q ss_pred ccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhc
Q 011674 264 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 343 (480)
Q Consensus 264 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 343 (480)
|+.|++++|.+++..+. .+..+++|++|++++|.++. .|..+..+++|++|++++|.+++..+..+.
T Consensus 218 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 55555555555444333 34455555555555555543 234445555555555555555544433332
Q ss_pred C------CCCCCEEEecCCccCc--ccccCCCCCCCCcEEEcCCC
Q 011674 344 S------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 344 ~------l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~l~l~~n 380 (480)
. .++++.+++++|.+.. ..+..+..+.+++.+++++|
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2 2556666666666543 33345555566666666665
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.6e-28 Score=232.68 Aligned_cols=266 Identities=20% Similarity=0.244 Sum_probs=187.2
Q ss_pred CCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCccc
Q 011674 52 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID 131 (480)
Q Consensus 52 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~ 131 (480)
+++.++++++.+... |..+. +++++|++++|.+++..+..+.+ +++|++|++++|.+.
T Consensus 32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~~~~~~~~~~-------------------l~~L~~L~L~~n~l~ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDGDFKN-------------------LKNLHTLILINNKIS 89 (330)
T ss_dssp ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTTTTTT-------------------CTTCCEEECCSSCCC
T ss_pred CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCCEeChhhhcc-------------------CCCCCEEECCCCcCC
Confidence 355555555544432 22221 34555555555555444434444 455666666666665
Q ss_pred ch-hccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHh
Q 011674 132 SI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 210 (480)
Q Consensus 132 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 210 (480)
.+ |..+..+++|++|++++|.+..++.. ..++|++|++++|.+.......+..
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------------------------~~~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKELPEK--------------------------MPKTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSBCCSS--------------------------CCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCccChh--------------------------hcccccEEECCCCcccccCHhHhcC
Confidence 54 44444556666666666555433221 1156777777777777666666666
Q ss_pred hcCCCcEEEccCCCCCc--chHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhh
Q 011674 211 VGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 288 (480)
Q Consensus 211 ~~~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 288 (480)
+ ++|+.|++++|.+.. ..+..+ ..+++|+.|++++|.++.... . ..++|+.|++++|.+++..+.
T Consensus 144 l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~-------- 210 (330)
T 1xku_A 144 L-NQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAA-------- 210 (330)
T ss_dssp C-TTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTG--------
T ss_pred C-ccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCccccCCc-c--ccccCCEEECCCCcCCccCHH--------
Confidence 6 778888888777764 233333 568999999999998886432 1 237999999999999988666
Q ss_pred hcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCC
Q 011674 289 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 368 (480)
Q Consensus 289 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 368 (480)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. +..+..+++|++|++++|.+++.+...+..
T Consensus 211 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 211 ----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ----HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 789999999999999999998888899999999999999999865 567889999999999999999987776643
Q ss_pred C------CCCcEEEcCCCccc
Q 011674 369 P------RSLKLLDLHGGWLL 383 (480)
Q Consensus 369 ~------~~L~~l~l~~n~~~ 383 (480)
. +.++.+++.+|++.
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSC
T ss_pred cccccccccccceEeecCccc
Confidence 3 78999999999973
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2e-29 Score=239.11 Aligned_cols=287 Identities=17% Similarity=0.210 Sum_probs=197.3
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
++++++++++.++.. |..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.++..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 688888888887653 3322 3678888888888887777778888888888888888887777778888888888888
Q ss_pred ccCCCCCCC--CCCCCEEEcCCCcccchhcc-CCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhh
Q 011674 108 WTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 184 (480)
Q Consensus 108 ~n~l~~l~~--~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 184 (480)
+|.++.++. .++|++|++++|.+..++.. +..+++|+.|++++|.+..... ....+
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~ 169 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---------------------EPGAF 169 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS---------------------CTTSS
T ss_pred CCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC---------------------Ccccc
Confidence 877776552 24666666666666655543 2244445555554444431100 01233
Q ss_pred ccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCc
Q 011674 185 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 264 (480)
Q Consensus 185 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 264 (480)
..+ +|++|++++|.++..... .+++|++|++++|.++...+..+ ..+++|+.|++++|.+++..+..+..+++|
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCSS----SCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cCC-ccCEEECcCCCCCccCcc----ccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 333 666666666666542211 11567777777777777665544 457888888888888887777678888888
Q ss_pred cEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc------cccCceeecCCCCCC--h
Q 011674 265 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLT--D 336 (480)
Q Consensus 265 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~--~ 336 (480)
+.|++++|.++..+. .+..+++|++|++++|+++...+..+.. .+.|+.|++++|.+. +
T Consensus 244 ~~L~L~~N~l~~lp~-------------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 244 RELHLDNNKLSRVPA-------------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CEEECCSSCCCBCCT-------------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CEEECCCCcCeecCh-------------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 888888888875433 4778888999999999888876666654 367889999999876 4
Q ss_pred hhHHhhcCCCCCCEEEecCCc
Q 011674 337 VSLHQLSSLSKLTNLSIRDAV 357 (480)
Q Consensus 337 ~~~~~l~~l~~L~~L~l~~n~ 357 (480)
..+..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 566778889999999998874
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.9e-29 Score=234.96 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=207.5
Q ss_pred CCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCC-----CCCCCCCEEEcC
Q 011674 52 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL-----PNISSLECLNLS 126 (480)
Q Consensus 52 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l~ 126 (480)
+++.++++++.+... |..+ .++|++|++++|.+.+..+.++.++++|++|++++|.++.+ ..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 577788877776643 3333 25778888888777776666677777777766666665542 244555555555
Q ss_pred CCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcch--hhccCCCCCeeeCcCCCCCC--
Q 011674 127 NCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGD-- 202 (480)
Q Consensus 127 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~-- 202 (480)
+|.+..+|..+. ++|++|++++|.+..++ .+..+++|++|++++|.++.
T Consensus 111 ~n~l~~l~~~~~---------------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLVEIPPNLP---------------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCCSCCSSCC---------------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCCccCcccc---------------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 555554444332 45666666666666552 36677888888888887753
Q ss_pred hhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccc
Q 011674 203 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 282 (480)
Q Consensus 203 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 282 (480)
..+..+.. .+|+.|++++|.++..+.. ..++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 164 ~~~~~~~~--l~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-- 235 (332)
T 2ft3_A 164 FEPGAFDG--LKLNYLRISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-- 235 (332)
T ss_dssp SCTTSSCS--CCCSCCBCCSSBCSSCCSS----SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT--
T ss_pred CCcccccC--CccCEEECcCCCCCccCcc----ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh--
Confidence 22222222 2899999999999886542 247999999999999988878889999999999999999988776
Q ss_pred cchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcC------CCCCCEEEecCC
Q 011674 283 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS------LSKLTNLSIRDA 356 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n 356 (480)
.+..+++|++|++++|+++. .|..+..+++|++|++++|.+++..+..+.. .++|+.|++++|
T Consensus 236 ----------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 236 ----------SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp ----------GGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred ----------HhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 68899999999999999985 5667899999999999999999887666654 467999999999
Q ss_pred ccC--cccccCCCCCCCCcEEEcCCCc
Q 011674 357 VLT--NSGLGSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 357 ~i~--~~~~~~~~~~~~L~~l~l~~n~ 381 (480)
.+. +..+..+..+++|+.+++++|.
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhccccc
Confidence 987 5566778888999999999885
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=1e-28 Score=253.42 Aligned_cols=366 Identities=20% Similarity=0.201 Sum_probs=269.0
Q ss_pred CCCCcEEecCCCCCCChhhHHhhh-CCCCCcEEEcCCC-cCCHHHH-HHHcCCCCCCEEEcCCCCCCHHHHhhc----cC
Q 011674 1 MTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSL----QV 73 (480)
Q Consensus 1 l~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~----~~ 73 (480)
+++|++|+|++| .+++..+..+. .+++|++|++++| .+++... ..+.++++|++|++++|.+++..+..+ ..
T Consensus 104 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 578999999999 58888888876 7999999999998 6665433 444589999999999998665433333 47
Q ss_pred CCCCCEEEccCCc--CCchh-hHhhcCCCCCcEEEcccc-CCCCC----CCCCCCCEEEcCCC-----------------
Q 011674 74 LTKLEYLDLWGSQ--VSNRG-AAVLKMFPRLSFLNLAWT-GVTKL----PNISSLECLNLSNC----------------- 128 (480)
Q Consensus 74 l~~L~~L~l~~~~--i~~~~-~~~l~~l~~L~~L~l~~n-~l~~l----~~~~~L~~L~l~~~----------------- 128 (480)
+++|++|++++|. +.... ...+..+++|++|++++| .+.++ ..+++|++|+++.+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 43222 223356799999999987 22222 24566666665443
Q ss_pred --------------cccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--h-hhccCCCCC
Q 011674 129 --------------TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--C-FLTQMKALE 191 (480)
Q Consensus 129 --------------~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~-~~~~~~~L~ 191 (480)
....++.....+++|++|++++|.+........+..+++|+.|++++| +... . ....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 122333333367899999999999765443334557899999999988 4322 2 334689999
Q ss_pred eeeC---------cCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEcc--C----CCCC----h
Q 011674 192 HLDL---------SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS--G----TQID----D 252 (480)
Q Consensus 192 ~L~l---------~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~--~----n~l~----~ 252 (480)
+|++ ..+.+++.....++..+++|+.|.+..+.+++.....+...+++|+.|+++ + +.++ +
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 9998 345777777777776559999999999999998888776679999999999 4 5666 2
Q ss_pred -HHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhc-CCCCCEEeCCCCCccccccccc-cccccCceeec
Q 011674 253 -YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQN-LNHLERLNLEQTQVSDATLFPL-STFKELIHLSL 329 (480)
Q Consensus 253 -~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L 329 (480)
..+..+..+++|+.|++++ .+++.... .+.. +++|+.|++++|.+++.....+ ..+++|++|++
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~------------~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFE------------YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHH------------HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHH------------HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 2333466889999999987 55544332 3444 8999999999999977655555 67899999999
Q ss_pred CCCCCChhhHH-hhcCCCCCCEEEecCCccCcccccCC-CCCCCCcEEEcCCCc
Q 011674 330 RNASLTDVSLH-QLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGGW 381 (480)
Q Consensus 330 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~l~l~~n~ 381 (480)
++|.+++.... .+..+++|++|++++|.++..+...+ ..+++++...+..+.
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 99999776554 44568999999999999977666555 346888776666554
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.8e-28 Score=225.11 Aligned_cols=255 Identities=18% Similarity=0.223 Sum_probs=185.6
Q ss_pred cEEEccccCCCCCC--CCCCCCEEEcCCCcccchhccC-CCCCCccEEEccCCCCCCh---hHHHhhhcCCCceEEEccC
Q 011674 102 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSN 175 (480)
Q Consensus 102 ~~L~l~~n~l~~l~--~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~ 175 (480)
+.++.+++.++.+| -.++|++|++++|.+..+|... ..+++|++|++++|.+... +.. +..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc--cccccccCEEECCC
Confidence 35666666666655 2346777777777776666653 3666666666666665533 121 22455666666666
Q ss_pred CccCcc-hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHH
Q 011674 176 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 254 (480)
Q Consensus 176 ~~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 254 (480)
|.+..+ ..+..++ +|++|++++|.++.......+..+++|++|++++|.+....
T Consensus 88 n~i~~l~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVITMSSNFLGLE-------------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEEEEEEEETCT-------------------------TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CccccChhhcCCCC-------------------------CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 655544 2244444 45555555554444433222356788888888888887777
Q ss_pred HHHhhcCCCccEEEccCccccc-cccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCC
Q 011674 255 ISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 333 (480)
Q Consensus 255 ~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 333 (480)
+..+..+++|+.|++++|.+.+ ..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhcccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 7778888999999999999876 3444 58889999999999999999888889999999999999999
Q ss_pred CChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC-CCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 334 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 334 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++.+++...++.++.
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 998877778899999999999999999888888887 49999999999999888766665543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=233.82 Aligned_cols=257 Identities=14% Similarity=0.187 Sum_probs=198.0
Q ss_pred CCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcC
Q 011674 120 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSS 197 (480)
Q Consensus 120 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~ 197 (480)
...++.++..+..+|..+. ++++.|++++|.+..++.. .|.++++|++|++++|.+..+ ..+..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3455555555555555443 4556666666665554432 244666777777777766665 3566777777777777
Q ss_pred CCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccC-CCCChHHHHHhhcCCCccEEEccCccccc
Q 011674 198 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKG 276 (480)
Q Consensus 198 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 276 (480)
|.++......+..+ ++|++|++++|.+...+...+ ..+++|++|++++ +.+....+..|..+++|+.|++++|.++.
T Consensus 122 n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 77776555555555 778888888887777666554 5688888898888 45555555678889999999999999886
Q ss_pred cccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCC
Q 011674 277 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 356 (480)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 356 (480)
.+ .+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 200 ~~--------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 200 IP--------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CC--------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cc--------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 53 3678899999999999999988899999999999999999999988888999999999999999
Q ss_pred ccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 357 VLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 357 ~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
.++......+..+++|+.|++++|++.|++...|+..+.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~ 304 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWI 304 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHH
T ss_pred CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHH
Confidence 999988888888999999999999999999988886544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=226.75 Aligned_cols=283 Identities=17% Similarity=0.187 Sum_probs=163.0
Q ss_pred CCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccchhc-cCCCCCCccEE
Q 011674 73 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKI 146 (480)
Q Consensus 73 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L 146 (480)
.|+.....+++++.++.. |..+ .++|++|++++|.++.++ .+++|++|++++|.+..+++ .+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445556666665543 2222 135555666555555322 34555555555555554432 23345555555
Q ss_pred EccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCC-CC
Q 011674 147 SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RF 225 (480)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l 225 (480)
++++|.+..++.. .+.++++|++|++++|.+..++.. ..+..+ ++|++|++++| .+
T Consensus 106 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~---------------------~~~~~l-~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 106 DLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYKTLGET---------------------SLFSHL-TKLQILRVGNMDTF 162 (353)
T ss_dssp ECCSSCCSSCCHH-HHTTCTTCSEEECTTCCCSSSCSS---------------------CSCTTC-TTCCEEEEEESSSC
T ss_pred ECCCCcCCcCCHh-HhCCCccCCEEECCCCCCcccCch---------------------hhhccC-CCCcEEECCCCccc
Confidence 5555555444332 123444455555554444443220 122233 45555555555 24
Q ss_pred CcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeC
Q 011674 226 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 305 (480)
Q Consensus 226 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 305 (480)
....+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+...... .+..+++|++|++
T Consensus 163 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~L~~L~L 229 (353)
T 2z80_A 163 TKIQRKDF-AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI------------FVDVTSSVECLEL 229 (353)
T ss_dssp CEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH------------HHHHTTTEEEEEE
T ss_pred cccCHHHc-cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh------------hhhhcccccEEEC
Confidence 44333333 3456666666666666655555566666666666666666544332 3445666666666
Q ss_pred CCCCcccccccccc---ccccCceeecCCCCCChh----hHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcC
Q 011674 306 EQTQVSDATLFPLS---TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 378 (480)
Q Consensus 306 ~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~ 378 (480)
++|.+++..+..+. ..+.++.++++++.+.+. .+..+..+++|++|++++|.++......+..+++|++|+++
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 66666654433322 356678888888887763 45668899999999999999997665556889999999999
Q ss_pred CCcccCHHH-HHHHHHh
Q 011674 379 GGWLLTEDA-ILQFCKM 394 (480)
Q Consensus 379 ~n~~~~~~~-~~~~~~~ 394 (480)
+|++.+++. +.++..+
T Consensus 310 ~N~~~~~~~~l~~l~~~ 326 (353)
T 2z80_A 310 TNPWDCSCPRIDYLSRW 326 (353)
T ss_dssp SSCBCCCHHHHHHHHHH
T ss_pred CCCccCcCCCcHHHHHH
Confidence 999999885 5554433
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.1e-27 Score=232.78 Aligned_cols=256 Identities=17% Similarity=0.200 Sum_probs=197.1
Q ss_pred CEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCC
Q 011674 121 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 198 (480)
Q Consensus 121 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n 198 (480)
..++.++..++.+|..+. ++++.|++++|.+..+++. .|.++++|++|++++|.+..+ ..+..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 445555555555554443 4556666666655544332 234566777777777766665 35667777777777777
Q ss_pred CCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccC-CCCChHHHHHhhcCCCccEEEccCcccccc
Q 011674 199 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGF 277 (480)
Q Consensus 199 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 277 (480)
.++......+..+ ++|++|++++|.+...+...+ ..+++|+.|++++ +.+....+..|..+++|+.|++++|.+++.
T Consensus 134 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp CCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred cCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7776555555555 778888888888777665554 5688899999888 456665556688899999999999998876
Q ss_pred ccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCc
Q 011674 278 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 357 (480)
+ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 212 ~--------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 P--------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp C--------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c--------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 2 36788999999999999999889999999999999999999999888889999999999999999
Q ss_pred cCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 358 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 358 i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
+++.....+..+++|+.|++++|++.|++...|+..+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l 315 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWL 315 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHH
T ss_pred CCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHH
Confidence 99888888888999999999999999999988775443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.8e-28 Score=227.79 Aligned_cols=261 Identities=20% Similarity=0.199 Sum_probs=170.9
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
.++..+++.+.+.......+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 35556777777766666666677788888888888887777778888888888888888776544 6677777777777
Q ss_pred ccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccC
Q 011674 108 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 187 (480)
Q Consensus 108 ~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 187 (480)
+|.+++++..++|++|++++|.+..++.. .+++|+.|++++|.+...
T Consensus 89 ~n~l~~l~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~------ 135 (317)
T 3o53_A 89 NNYVQELLVGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITML------ 135 (317)
T ss_dssp SSEEEEEEECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSG------
T ss_pred CCccccccCCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCc------
Confidence 77766666556666666666655544321 123344444444444433
Q ss_pred CCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEE
Q 011674 188 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 267 (480)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 267 (480)
.+..+..+ ++|++|++++|.++...+..+...+++|++|++++|.+++.. ....+++|+.|
T Consensus 136 ----------------~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L 196 (317)
T 3o53_A 136 ----------------RDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTL 196 (317)
T ss_dssp ----------------GGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEE
T ss_pred ----------------cchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEE
Confidence 22222222 445555555555555444444344566666666666665542 12346777777
Q ss_pred EccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCC-hhhHHhhcCCC
Q 011674 268 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLS 346 (480)
Q Consensus 268 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~ 346 (480)
++++|.+++.++. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+. +..+..+..++
T Consensus 197 ~Ls~N~l~~l~~~-------------~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 197 DLSSNKLAFMGPE-------------FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp ECCSSCCCEECGG-------------GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred ECCCCcCCcchhh-------------hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 7777777765443 66778888888888888763 556777888888888888887 55667778888
Q ss_pred CCCEEEecCC
Q 011674 347 KLTNLSIRDA 356 (480)
Q Consensus 347 ~L~~L~l~~n 356 (480)
+|+.++++++
T Consensus 263 ~L~~l~l~~~ 272 (317)
T 3o53_A 263 RVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHH
T ss_pred cceEEECCCc
Confidence 8888888754
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=220.15 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=185.8
Q ss_pred hCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcE
Q 011674 24 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 103 (480)
Q Consensus 24 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 103 (480)
..|+.....+++++.++.. |..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+.++.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3466666788888887764 3322 357888888888888776667888888888888888888877777888888888
Q ss_pred EEccccCCCCCC-----CCCCCCEEEcCCCcccchhc--cCCCCCCccEEEccCCC-CCChhHHHhhhcCCCceEEEccC
Q 011674 104 LNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINEREAFLYIETSLLSFLDVSN 175 (480)
Q Consensus 104 L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~ 175 (480)
|++++|.++.++ .+++|++|++++|.+..++. .+..+++|++|++++|. +..+++ ..+.++++|+.|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCC
Confidence 888888887655 57788888888888887776 45578888888888874 444433 2345678888888888
Q ss_pred CccCcc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHH--hcCCCCCcEEEccCCCCC
Q 011674 176 SSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL--AGHLPNLEILSLSGTQID 251 (480)
Q Consensus 176 ~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~ 251 (480)
|.+... ..+..+++|++|++++|.+.......+..+ ++|+.|++++|.++......+ ......++.+++..+.+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 887766 467777888888888888766544444444 778888888887766443221 112344555555555554
Q ss_pred hHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCC
Q 011674 252 DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 331 (480)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 331 (480)
+..... .+ ..+..+++|++|++++|+++.+....+..+++|++|++++
T Consensus 263 ~~~l~~--------------------l~------------~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 263 DESLFQ--------------------VM------------KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp HHHHHH--------------------HH------------HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred Ccchhh--------------------hH------------HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 321110 11 1355566666666666666654443445666666666666
Q ss_pred CCCChh
Q 011674 332 ASLTDV 337 (480)
Q Consensus 332 n~l~~~ 337 (480)
|.+.+.
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 665543
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.9e-28 Score=226.09 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=117.0
Q ss_pred CCCCEEEcCCCCCCH--HHHhhccCCCCCCEEEccC-CcCCchhhHhhcCCCCCcEEEccccCCCC-C----CCCCCCCE
Q 011674 51 QNLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFLNLAWTGVTK-L----PNISSLEC 122 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-l----~~~~~L~~ 122 (480)
.+++.|++++|.+.+ ..|..|.++++|++|++++ |.+.+..|..+.++++|++|++++|.+++ + ..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777666 5666677777777777774 66666666667777777777777666552 2 23445555
Q ss_pred EEcCCCccc-chhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCC-CCCeeeCcCCCC
Q 011674 123 LNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK-ALEHLDLSSSMI 200 (480)
Q Consensus 123 L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~L~~L~l~~n~l 200 (480)
|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----------------------~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----------------------DSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-----------------------GGGGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-----------------------HHHhhhhhcCcEEECcCCee
Confidence 555555554 344444444444444444443331111 1222332 444444444443
Q ss_pred CChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccc
Q 011674 201 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ 280 (480)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 280 (480)
.+..+..+..+ . |+.|++++|.++...+..+ ..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..+.
T Consensus 187 ~~~~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 187 TGKIPPTFANL-N-LAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEECCGGGGGC-C-CSEEECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eccCChHHhCC-c-ccEEECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 33222223222 2 4444444444433333222 2344444444444444432222 33444444444444444444333
Q ss_pred cccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCC
Q 011674 281 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 332 (480)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 332 (480)
.+..+++|++|++++|++++..|.. ..+++|+.+++++|
T Consensus 263 ------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 263 ------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp ------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred ------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 3444445555555555444433332 44444444444444
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.7e-28 Score=226.20 Aligned_cols=249 Identities=18% Similarity=0.212 Sum_probs=203.7
Q ss_pred CCCCEEEcCCCccc---chhccCCCCCCccEEEccC-CCCCC-hhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCC
Q 011674 118 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFIN-EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL 190 (480)
Q Consensus 118 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L 190 (480)
.++++|++++|.+. .+|..+..+++|++|++++ |.+.+ ++.. +.++++|++|++++|.+.+. ..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46677777777776 4777777888888888884 66653 3333 45788888888888888743 467888999
Q ss_pred CeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCC-CCcEEEccCCCCChHHHHHhhcCCCccEEEc
Q 011674 191 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDI 269 (480)
Q Consensus 191 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 269 (480)
++|++++|.+....+..+..+ ++|++|++++|.+++..+..+ ..++ +|+.|++++|++++..+..+..++ |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 999999998887666777777 899999999999886666555 3566 899999999999877778888887 999999
Q ss_pred cCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCC
Q 011674 270 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 349 (480)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 349 (480)
++|.+.+..+. .+..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+..+..+++|+
T Consensus 205 s~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 205 SRNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp CSSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred cCCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 99999987776 688999999999999999876554 77889999999999999887788899999999
Q ss_pred EEEecCCccCcccccCCCCCCCCcEEEcCCCcccCH
Q 011674 350 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE 385 (480)
Q Consensus 350 ~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~ 385 (480)
+|++++|.+++..+.. ..+++|+.+++.+|+..|+
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 9999999999876665 6779999999999986553
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.1e-27 Score=223.40 Aligned_cols=257 Identities=18% Similarity=0.150 Sum_probs=210.3
Q ss_pred CcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEcc
Q 011674 4 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 83 (480)
Q Consensus 4 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 83 (480)
++..+++.+ .+.......+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 445566665 4555555666778899999999999999888999999999999999999987654 9999999999999
Q ss_pred CCcCCchhhHhhcCCCCCcEEEccccCCCCCC--CCCCCCEEEcCCCcccchhc-cCCCCCCccEEEccCCCCCChhHHH
Q 011674 84 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAF 160 (480)
Q Consensus 84 ~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~--~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 160 (480)
+|.+++.. ..++|++|++++|.++.++ .+++|++|++++|.+..+++ .+..+++|+.|++++|.+...++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 99988643 4589999999999998754 67899999999999998866 4458899999999999998776554
Q ss_pred hhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCC
Q 011674 161 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 240 (480)
Q Consensus 161 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 240 (480)
.+..+++|++|++++|.+..++....+++|++|++++|.++..... +..+ ++|+.|++++|.++..+.. +..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l-~~L~~L~L~~N~l~~l~~~--~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLIEKA--LRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEECTT--CCCCTTC
T ss_pred HhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhh-hccc-CcccEEECcCCcccchhhH--hhcCCCC
Confidence 4456899999999999998887777789999999999988875444 5555 8899999999988865442 2567888
Q ss_pred cEEEccCCCCC-hHHHHHhhcCCCccEEEccCc
Q 011674 241 EILSLSGTQID-DYAISYMSMMPSLKFIDISNT 272 (480)
Q Consensus 241 ~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~~ 272 (480)
+.|++++|.+. +..+.++..+++|+.+++.++
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 88999888888 667777778888888877644
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=215.16 Aligned_cols=220 Identities=16% Similarity=0.222 Sum_probs=173.9
Q ss_pred CCceEEEccCCccCcch--hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCC-CCcchHHHHhcCCCCCcE
Q 011674 166 SLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEI 242 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 242 (480)
++++.|++++|.+..++ .+..+++|++|++++|.++...+..+..+ ++|++|++++|. +....+..+ ..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence 45555555555555542 35666677777777776666555555555 777777777775 666555444 46888889
Q ss_pred EEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccc
Q 011674 243 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 322 (480)
Q Consensus 243 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 322 (480)
|++++|.+++..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------HhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 99988888877777788889999999999998877665 688899999999999999987777788999
Q ss_pred cCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCCcee
Q 011674 323 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 399 (480)
Q Consensus 323 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~l~ 399 (480)
+|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+++...++.++.....
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~ 254 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcc
Confidence 99999999999998878889999999999999999998777778888999999999999999988877766655443
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3e-25 Score=225.11 Aligned_cols=266 Identities=20% Similarity=0.187 Sum_probs=183.0
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEc
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 106 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 106 (480)
.++++|++++|.++. +|..+. ++|++|++++|.++... . .+++|++|++++|++++... .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 467888888888775 333332 67888888888777532 2 56788888888888775332 5678888888
Q ss_pred cccCCCCCC-CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhc
Q 011674 107 AWTGVTKLP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT 185 (480)
Q Consensus 107 ~~n~l~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 185 (480)
++|.++.++ .+++|++|++++|.+..+|..+ ++|++|++++|.+..++. .+++|+.|++++|.+..++ .
T Consensus 109 s~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~--~ 178 (622)
T 3g06_A 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLP--M 178 (622)
T ss_dssp CSCCCCCCCCCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCC--C
T ss_pred cCCcCCCCCCCCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCC-----ccCCCCEEECCCCCCCCCc--c
Confidence 888877766 4567888888888887777643 777888888887776543 3467778888888777766 4
Q ss_pred cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCcc
Q 011674 186 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 265 (480)
Q Consensus 186 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 265 (480)
.+++|+.|++++|.++.... ..++|+.|++++|.++..+. .+++|+.|++++|.+++.. ..+++|+
T Consensus 179 ~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp----~~l~~L~ 244 (622)
T 3g06_A 179 LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLP----VLPSELK 244 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCC----CCCTTCC
T ss_pred cCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccCC-----CCCCCCEEEccCCccCcCC----CCCCcCc
Confidence 56777788887777765321 12677777777777775442 3567777777777776533 4556777
Q ss_pred EEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcC
Q 011674 266 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 344 (480)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 344 (480)
.|++++|.++..+. .+++|+.|++++|.++. .|..+..+++|+.|+|++|.+++..+..+..
T Consensus 245 ~L~Ls~N~L~~lp~----------------~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 245 ELMVSGNRLTSLPM----------------LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp EEECCSSCCSCCCC----------------CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred EEECCCCCCCcCCc----------------ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 77777777765421 34667777777777774 3556777777777777777777766555443
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.1e-25 Score=223.40 Aligned_cols=256 Identities=20% Similarity=0.172 Sum_probs=139.3
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-CCCCCCEEEcCCCc
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCT 129 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-~~~~L~~L~l~~~~ 129 (480)
.++++|++++|.++. +|..+. ++|++|++++|.++.... .+++|++|++++|.++.++ .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 457777777777764 344333 677777777777765332 4567777777777766655 45666666666666
Q ss_pred ccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHH
Q 011674 130 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 209 (480)
Q Consensus 130 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 209 (480)
+..+|. ..++|+.|++++|.+..++. .+++|++|++++|.+..++. .+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~--~~---------------------- 160 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LP---------------------- 160 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC----------------------
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCC--cc----------------------
Confidence 666555 34556666666665554433 13455555555555544322 23
Q ss_pred hhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhh
Q 011674 210 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 289 (480)
Q Consensus 210 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 289 (480)
.+|+.|++++|.++..+ ..+++|+.|++++|.+++... .+++|+.|++++|.++..+.
T Consensus 161 ---~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~---------- 218 (622)
T 3g06_A 161 ---SELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA---------- 218 (622)
T ss_dssp ---TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----------
T ss_pred ---CCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----------
Confidence 34455555555444433 124455555555555543211 23455555555555554321
Q ss_pred cHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC
Q 011674 290 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 369 (480)
Q Consensus 290 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 369 (480)
.+++|++|++++|.++++. ..+++|+.|++++|.++.+.. .+++|+.|++++|.++.. +..+..+
T Consensus 219 ------~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l 283 (622)
T 3g06_A 219 ------LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHL 283 (622)
T ss_dssp ------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGS
T ss_pred ------CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhc
Confidence 1245556666666555432 234556666666665554322 445566666666665532 3445555
Q ss_pred CCCcEEEcCCCcc
Q 011674 370 RSLKLLDLHGGWL 382 (480)
Q Consensus 370 ~~L~~l~l~~n~~ 382 (480)
++|+.|++++|++
T Consensus 284 ~~L~~L~L~~N~l 296 (622)
T 3g06_A 284 SSETTVNLEGNPL 296 (622)
T ss_dssp CTTCEEECCSCCC
T ss_pred cccCEEEecCCCC
Confidence 6666666666664
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.4e-26 Score=212.44 Aligned_cols=241 Identities=17% Similarity=0.229 Sum_probs=164.3
Q ss_pred CCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccch---hccCCCCCCccEEEc
Q 011674 77 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISL 148 (480)
Q Consensus 77 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l 148 (480)
-+.++++++.++.. |..+ .++|++|++++|.++.++ .+++|++|++++|.+..+ +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35788888888764 3333 368999999999998765 678999999999998855 566668999999999
Q ss_pred cCCCCCChhHHHhhhcCCCceEEEccCCccCcch---hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCC
Q 011674 149 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 225 (480)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 225 (480)
++|.+..++.. +..+++|++|++++|.+...+ .+..+++|++|++++|.+....+..+..+ ++|++|++++|.+
T Consensus 86 s~n~i~~l~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l 162 (306)
T 2z66_A 86 SFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSF 162 (306)
T ss_dssp CSCSEEEEEEE--EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEE
T ss_pred CCCccccChhh--cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCcc
Confidence 99999877654 457999999999999988773 56778888888888887765554444444 6666666666665
Q ss_pred CcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeC
Q 011674 226 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 305 (480)
Q Consensus 226 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 305 (480)
.+......+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+. .+..+++|++|++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L 230 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------------PYKCLNSLQVLDY 230 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG------------GGTTCTTCCEEEC
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh------------hccCcccCCEeEC
Confidence 5421112224456666666666666655555555556666666666665554443 3555556666666
Q ss_pred CCCCccccccccccccc-cCceeecCCCCCC
Q 011674 306 EQTQVSDATLFPLSTFK-ELIHLSLRNASLT 335 (480)
Q Consensus 306 ~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~ 335 (480)
++|++.+..+..+..++ +|++|++++|.+.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 66665555555555553 5556666555553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.6e-26 Score=222.14 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=168.7
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
..+.++.++..++.+ |..+ .++++.|+|++|.+....+..|.++++|++|++++|.+.+..+.+|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456788888777763 3322 3678999999998888878888899999999999999888888888888899999998
Q ss_pred ccCCCCCC-----CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc
Q 011674 108 WTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 181 (480)
Q Consensus 108 ~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 181 (480)
+|.++.++ .+++|++|++++|.+..++.... .+++|++|++++|......+...|.++++|++|++++|.+..+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 88887654 56788888888888887776443 7788888888875443332223455677788888887777777
Q ss_pred hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcC
Q 011674 182 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 261 (480)
Q Consensus 182 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 261 (480)
+.+..+++|++|++++|.++...+..+..+ ++|+.|++++|.++...+..+ ..+++|+.|++++|+++...+..+..+
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cccCCCcccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHhccc
Confidence 666666777777777776665555555554 566666666666655554443 345556666666655555544445555
Q ss_pred CCccEEEccCcccc
Q 011674 262 PSLKFIDISNTDIK 275 (480)
Q Consensus 262 ~~L~~L~l~~~~l~ 275 (480)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 55555555555543
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1e-25 Score=222.78 Aligned_cols=242 Identities=18% Similarity=0.167 Sum_probs=155.7
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
..+.++.++..++.. |.. -.+++++|+|++|.+.+..+..|.++++|++|++++|.+++..+.+|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~i-P~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-PQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCcc-CCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 346777777777653 322 23678888888888888777788888888888888888887777778888888888888
Q ss_pred ccCCCCCC-----CCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc
Q 011674 108 WTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 181 (480)
Q Consensus 108 ~n~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 181 (480)
+|.++.++ .+++|++|++++|.+..++.... .+++|+.|++++|......+...+.++++|++|++++|.+..+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 88777654 46778888888888777766433 7777777777774433322222345667777777777777666
Q ss_pred hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcC
Q 011674 182 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 261 (480)
Q Consensus 182 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 261 (480)
+.+..+++|++|++++|.++...+..+..+ ++|+.|++++|.++...+..+ ..+++|+.|++++|+++...+..+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred ccccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccChHHhccc
Confidence 666666666666666666655544444444 555555555555555444333 335555555555555554444444445
Q ss_pred CCccEEEccCccc
Q 011674 262 PSLKFIDISNTDI 274 (480)
Q Consensus 262 ~~L~~L~l~~~~l 274 (480)
++|+.|++++|.+
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 5555555555544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=223.55 Aligned_cols=236 Identities=20% Similarity=0.215 Sum_probs=140.3
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCcc
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 130 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l 130 (480)
++|++|+|++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++++..++|++|++++|.+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 367777777777777666777777777777777777766544 666666666666666666555555555555555554
Q ss_pred cchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHh
Q 011674 131 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 210 (480)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 210 (480)
..++.. .+++|+.|++++|.+.+. .+..+..
T Consensus 112 ~~~~~~---------------------------~l~~L~~L~L~~N~l~~~----------------------~~~~~~~ 142 (487)
T 3oja_A 112 SRVSCS---------------------------RGQGKKNIYLANNKITML----------------------RDLDEGC 142 (487)
T ss_dssp CCEEEC---------------------------CCSSCEEEECCSSCCCSG----------------------GGBCGGG
T ss_pred CCCCcc---------------------------ccCCCCEEECCCCCCCCC----------------------CchhhcC
Confidence 443221 123444444444444443 2222222
Q ss_pred hcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhc
Q 011674 211 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 290 (480)
Q Consensus 211 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 290 (480)
+ ++|+.|++++|.+++..+..+...+++|+.|++++|.+++..+ ...+++|+.|++++|.+++.++.
T Consensus 143 l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~---------- 209 (487)
T 3oja_A 143 R-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE---------- 209 (487)
T ss_dssp G-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG----------
T ss_pred C-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh----------
Confidence 2 4444455555555444444443345566666666665554421 23456677777777776665443
Q ss_pred HHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCC-hhhHHhhcCCCCCCEEEec
Q 011674 291 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSIR 354 (480)
Q Consensus 291 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~ 354 (480)
+..+++|+.|++++|.+++ .|..+..+++|+.|++++|.+. +..+..+..++.|+.++++
T Consensus 210 ---~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 ---FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ---GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5666777777777777776 3555667777777777777776 4445666667777776665
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.3e-24 Score=199.67 Aligned_cols=204 Identities=21% Similarity=0.294 Sum_probs=127.2
Q ss_pred CccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCC-CCChhHHHHHhhcCCCcEE
Q 011674 142 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNL 218 (480)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L 218 (480)
+|++|++++|.+..+++. .+..+++|++|++++|.+..+ ..+..+++|++|++++|. +....+..+..+ ++|++|
T Consensus 33 ~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~L~~L 110 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTL 110 (285)
T ss_dssp TCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TTCCEE
T ss_pred CceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC-cCCCEE
Confidence 344444444444333321 123445555555555555444 245555666666666664 554444444444 666666
Q ss_pred EccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCC
Q 011674 219 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 298 (480)
Q Consensus 219 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 298 (480)
++++|.++...+..+ ..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+. .+..++
T Consensus 111 ~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~ 177 (285)
T 1ozn_A 111 HLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER------------AFRGLH 177 (285)
T ss_dssp ECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT------------TTTTCT
T ss_pred ECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH------------HhcCcc
Confidence 666666665544443 4567777777777777666555566777777777777777665554 466777
Q ss_pred CCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 299 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
+|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77777777777777667777777777777777777777666667777777777777777654
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9.7e-25 Score=205.88 Aligned_cols=230 Identities=16% Similarity=0.145 Sum_probs=120.2
Q ss_pred CCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc-hhhccCCCCCeeeCcC
Q 011674 119 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSS 197 (480)
Q Consensus 119 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~ 197 (480)
++++|++++|.+..+|+.+..+++|++|++++|.+..++.. +.++++|++|++++|.+..+ ..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 44444444444444444444455555555555544433322 22445555555555555444 2445555555555555
Q ss_pred CCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcccccc
Q 011674 198 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 277 (480)
Q Consensus 198 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 277 (480)
|.+....+.. +....+.+. +..+++|++|++++|.++ ..|..+..+++|+.|++++|.+++.
T Consensus 160 n~~~~~~p~~-------~~~~~~~~~----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 160 CPELTELPEP-------LASTDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp ETTCCCCCSC-------SEEEC-CCC----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCccccChh-------Hhhccchhh----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC
Confidence 4443322211 111111100 123555666666665555 2334455566666666666666543
Q ss_pred ccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCc
Q 011674 278 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 357 (480)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 357 (480)
++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 222 ~~-------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 GP-------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CG-------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred ch-------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 32 25556666666666666555555566666666666666665555555556666666666666666
Q ss_pred cCcccccCCCCCCCCcEEEcCCCc
Q 011674 358 LTNSGLGSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 358 i~~~~~~~~~~~~~L~~l~l~~n~ 381 (480)
+.+..+..+..+++++.+++..+.
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGG
T ss_pred chhhccHHHhhccCceEEeCCHHH
Confidence 666666666666666666666554
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.8e-25 Score=219.13 Aligned_cols=235 Identities=19% Similarity=0.169 Sum_probs=194.7
Q ss_pred CCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 25 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
.+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+ |..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34599999999999999888899999999999999999987654 999999999999999988744 34899999
Q ss_pred EccccCCCCCC--CCCCCCEEEcCCCcccchhc-cCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc
Q 011674 105 NLAWTGVTKLP--NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 181 (480)
Q Consensus 105 ~l~~n~l~~l~--~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 181 (480)
++++|.++.++ .+++|++|++++|.+..+++ .+..+++|+.|++++|.+.+.++...+..+++|+.|++++|.+++.
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999998755 67899999999999998754 5568899999999999998766554444789999999999999988
Q ss_pred hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCC-hHHHHHhhc
Q 011674 182 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID-DYAISYMSM 260 (480)
Q Consensus 182 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 260 (480)
+....+++|++|++++|.+++..+. +..+ ++|+.|++++|.++..+.. +..+++|+.|++++|.+. +..+.++..
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l-~~L~~L~Ls~N~l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCEECTT--CCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cccccCCCCCEEECCCCCCCCCCHh-HcCC-CCccEEEecCCcCcccchh--hccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 7777889999999999998875554 5555 8899999999988875543 256788888888888887 556666777
Q ss_pred CCCccEEEcc
Q 011674 261 MPSLKFIDIS 270 (480)
Q Consensus 261 ~~~L~~L~l~ 270 (480)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 7777666654
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.7e-24 Score=202.79 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=151.1
Q ss_pred CCCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 165 TSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
.+.++.|++++|.+..+ +.+..+++|++|++++|.+. ..+..+..+ ++|++|++++|.++..+. .+ ..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~~lp~-~l-~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLRALPA-SI-ASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCCCCCG-GG-GGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccccCcH-HH-hcCcCCCEE
Confidence 35566666666665555 23455666666666666665 233344444 666666666666664332 22 456777777
Q ss_pred EccCCCCChHHHHHh---------hcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc
Q 011674 244 SLSGTQIDDYAISYM---------SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 314 (480)
Q Consensus 244 ~l~~n~l~~~~~~~~---------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 314 (480)
++++|.+.+..|..+ ..+++|+.|++++|.++.. +. .+..+++|++|++++|.+.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~------------~l~~l~~L~~L~L~~N~l~~l- 221 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PA------------SIANLQNLKSLKIRNSPLSAL- 221 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CG------------GGGGCTTCCEEEEESSCCCCC-
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hH------------hhcCCCCCCEEEccCCCCCcC-
Confidence 777765554444443 3589999999999999854 44 588999999999999999975
Q ss_pred cccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 315 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 315 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 5568899999999999999888878889999999999999999999888888899999999999998744
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=8.3e-25 Score=205.19 Aligned_cols=247 Identities=20% Similarity=0.133 Sum_probs=179.6
Q ss_pred CCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCC--hhHH-----HhhhcCCCceEEEccCCccCcc--hhh--cc
Q 011674 118 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREA-----FLYIETSLLSFLDVSNSSLSRF--CFL--TQ 186 (480)
Q Consensus 118 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~-----~~~~~~~~L~~L~l~~~~l~~~--~~~--~~ 186 (480)
++|+++++++|.+ .+|..+... |+.|++++|.+.. ++.. ..+.++++|++|++++|.+.+. ..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4555666666666 555544422 6666666665532 1111 1223578889999998888753 222 78
Q ss_pred CCCCCeeeCcCCCCCChhHHHHHhhc----CCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChH--HHHHh--
Q 011674 187 MKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM-- 258 (480)
Q Consensus 187 ~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-- 258 (480)
+++|++|++++|.++.. +..+..++ ++|++|++++|.+....+..+ +.+++|++|++++|++.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 89999999999988876 45555442 789999999999988876665 5789999999999998764 23344
Q ss_pred hcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc-ccccccccCceeecCCCCCChh
Q 011674 259 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDV 337 (480)
Q Consensus 259 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 337 (480)
..+++|++|++++|.+++.... ....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGV---------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHH---------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred ccCCCCCEEECCCCcCcchHHH---------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 7889999999999998843211 01245678899999999999988664 4556688999999999998854
Q ss_pred hHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCccc
Q 011674 338 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 383 (480)
Q Consensus 338 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~ 383 (480)
+..+. ++|++|++++|++++. +. +..+++|++|++++|++.
T Consensus 269 -p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 269 -PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 44443 8899999999999887 33 778899999999999863
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6.5e-24 Score=195.62 Aligned_cols=211 Identities=20% Similarity=0.215 Sum_probs=152.4
Q ss_pred CceEEEccCCccCcch--hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEE
Q 011674 167 LLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 244 (480)
Q Consensus 167 ~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 244 (480)
++++|++++|.+..++ .+..+++|++|++++|.+.......+..+ ++|++|++++|.++...+..+ ..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence 4555555555555442 45556666666666666655444444444 667777777777666655444 4577888888
Q ss_pred ccCCCCChHHHHHhhcCCCccEEEccCccccccc-cccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccccc
Q 011674 245 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI-QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 323 (480)
Q Consensus 245 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 323 (480)
+++|.+....+..+..+++|+.|++++|.+.+.. +. .+..+++|++|++++|++++..+..+..+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 8888777665555778888888888888887643 44 5888899999999999988877777777777
Q ss_pred Cc----eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHH-HHHHH
Q 011674 324 LI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFC 392 (480)
Q Consensus 324 L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~ 392 (480)
|+ .|++++|.+.+..+..+ ...+|++|++++|.+++.....+..+++|++|++++|++.|++. +.++.
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~ 247 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 247 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHH
T ss_pred ccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHH
Confidence 77 88999999887755444 44589999999999998877777888999999999999988774 44443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2e-23 Score=191.50 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=163.0
Q ss_pred CceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEcc
Q 011674 167 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 246 (480)
Q Consensus 167 ~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 246 (480)
..+.++++++.++.++.- ..+++++|++++|.+.......+..+ ++|++|++++|.++..+...+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECC
Confidence 345566666665555321 12456677777766665554445555 677777777777776655444 568888899998
Q ss_pred CCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCce
Q 011674 247 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 326 (480)
Q Consensus 247 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 326 (480)
+|.++...+..+..+++|+.|++++|.+++..+. .|..+++|++|++++|.+....+..+..+++|++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 8888877777778889999999999999888766 6888999999999999999887777889999999
Q ss_pred eecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHH
Q 011674 327 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 387 (480)
Q Consensus 327 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 387 (480)
|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|+.|++++|++.|++.
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999998877778899999999999999998877778889999999999999988764
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.4e-25 Score=207.85 Aligned_cols=248 Identities=19% Similarity=0.187 Sum_probs=163.1
Q ss_pred hccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCC--CC-----------CCCCCCEEEcCCCccc-chhc
Q 011674 70 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP-----------NISSLECLNLSNCTID-SILE 135 (480)
Q Consensus 70 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~--l~-----------~~~~L~~L~l~~~~l~-~~~~ 135 (480)
.++..++|+++++++|.+ ..|..+... |++|++++|.+.. ++ .+++|++|++++|.+. .+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667788888888888 345544433 7777777777653 22 4677888888888777 4666
Q ss_pred cC--CCCCCccEEEccCCCCCChhHHHhhhcC-----CCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCCChhHH
Q 011674 136 GN--ENKAPLAKISLAGTTFINEREAFLYIET-----SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVE 206 (480)
Q Consensus 136 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~ 206 (480)
.+ ..+++|++|++++|.+.+.+..+ ..+ ++|++|++++|.+... ..+..+++|++|++++|.+.+....
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWL--AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHH--HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHH--HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 55 56777777777777776653322 122 5566666666665554 2444555555555555544321100
Q ss_pred HHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCC---hHHHHHhhcCCCccEEEccCcccccccccccc
Q 011674 207 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID---DYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 283 (480)
Q Consensus 207 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 283 (480)
.....+..+++|++|++++|.++ ......+..+++|+.|++++|.+++..+..
T Consensus 192 ----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-- 247 (312)
T 1wwl_A 192 ----------------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-- 247 (312)
T ss_dssp ----------------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--
T ss_pred ----------------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--
Confidence 01111145677888888888777 333344557788888888888888765320
Q ss_pred chhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 284 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
.+..+++|++|++++|.++. .|..+. ++|++|++++|++++. +. +..+++|++|++++|.+++.
T Consensus 248 ---------~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 248 ---------SCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ---------CCCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ---------hhhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 35567889999999999885 455444 7899999999998887 33 78889999999999988764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.4e-23 Score=189.81 Aligned_cols=212 Identities=24% Similarity=0.264 Sum_probs=167.0
Q ss_pred cCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 164 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
++++++.++++++.++.++.- ..+.++.|++++|.++...+..+..+ ++|+.|++++|.++..... ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEE
Confidence 455666666666666655321 12567777777777766655556665 7777777777777765543 468889999
Q ss_pred EccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccccc
Q 011674 244 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 323 (480)
Q Consensus 244 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 323 (480)
++++|+++.. +..+..+++|+.|++++|.+++..+. .|.++++|++|++++|+++...+..+..+++
T Consensus 83 ~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 9999988754 34567889999999999999988776 6889999999999999999888888889999
Q ss_pred CceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHh
Q 011674 324 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 394 (480)
Q Consensus 324 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 394 (480)
|+.|+|++|+++...+..+..+++|++|++++|+++.. +..+...++|+.+++.+|++.|++.+.++..+
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHHHHHH
Confidence 99999999999988777788899999999999999864 44555668999999999999999887766544
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-22 Score=196.94 Aligned_cols=251 Identities=15% Similarity=0.212 Sum_probs=189.6
Q ss_pred HhhhCCCCCcEEEcCCCcCCHHHHHH----HcCCCCCCEEEcCCCC---CCHHHHhh-------ccCCCCCCEEEccCCc
Q 011674 21 KHLLSISTLEKLWLSETGLTADGIAL----LSSLQNLSVLDLGGLP---VTDLVLRS-------LQVLTKLEYLDLWGSQ 86 (480)
Q Consensus 21 ~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~L~~~~---~~~~~~~~-------~~~l~~L~~L~l~~~~ 86 (480)
..+..+++|++|++++|.+++..+.. +..+++|++|+|++|. +.+..|.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34567899999999999998876655 5589999999999874 33333333 4788999999999999
Q ss_pred CCc----hhhHhhcCCCCCcEEEccccCCCC-----CC----CC---------CCCCEEEcCCCccc--chh---ccCCC
Q 011674 87 VSN----RGAAVLKMFPRLSFLNLAWTGVTK-----LP----NI---------SSLECLNLSNCTID--SIL---EGNEN 139 (480)
Q Consensus 87 i~~----~~~~~l~~l~~L~~L~l~~n~l~~-----l~----~~---------~~L~~L~l~~~~l~--~~~---~~~~~ 139 (480)
+.+ ..+..+..+++|++|++++|.++. ++ .+ ++|++|++++|.+. .++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 987 466678889999999999998863 22 23 89999999999986 444 45568
Q ss_pred CCCccEEEccCCCCCChh--H-HH-hhhcCCCceEEEccCCccCc-----c-hhhccCCCCCeeeCcCCCCCChhHHHHH
Q 011674 140 KAPLAKISLAGTTFINER--E-AF-LYIETSLLSFLDVSNSSLSR-----F-CFLTQMKALEHLDLSSSMIGDDSVEMVA 209 (480)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~--~-~~-~~~~~~~L~~L~l~~~~l~~-----~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 209 (480)
+++|++|++++|.+.... . .- .+..+++|++|++++|.++. + ..+..+++|++|++++|.++..+...++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 889999999999987321 1 11 34578999999999999852 2 4678899999999999999987555444
Q ss_pred hh-----cCCCcEEEccCCCCCcc----hHHHHhcCCCCCcEEEccCCCCChHHH--HHhh-cCCCccEEEccC
Q 011674 210 CV-----GANLRNLNLSNTRFSSA----GVGILAGHLPNLEILSLSGTQIDDYAI--SYMS-MMPSLKFIDISN 271 (480)
Q Consensus 210 ~~-----~~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~~~L~~L~l~~ 271 (480)
.. +++|++|++++|.++.. .+..+...+++|++|++++|.+++..+ ..+. .++.++.+++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 32 38999999999999983 344443568999999999999987653 3332 344444444443
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.9e-22 Score=193.30 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=38.1
Q ss_pred EEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHH----hhccCCC-CCCEEEccCCcCCchhhHhhc
Q 011674 32 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVL----RSLQVLT-KLEYLDLWGSQVSNRGAAVLK 96 (480)
Q Consensus 32 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~l~ 96 (480)
.+++.|.+++..+..+...++|++|++++|.+++..+ ..|.+++ +|++|++++|.+++..+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence 4556666666555555555556666666666655444 5555665 666666666666655454443
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.9e-22 Score=188.64 Aligned_cols=254 Identities=21% Similarity=0.234 Sum_probs=158.1
Q ss_pred CCCEEEccCCcCCchhhHhhcCC--CCCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCC
Q 011674 76 KLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 153 (480)
Q Consensus 76 ~L~~L~l~~~~i~~~~~~~l~~l--~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 153 (480)
.++.++++++.+. +..+..+ +.++.|++++|. +...+..+..+++|++|++++|.+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-------------------l~~~~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-------------------MDQPLAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-------------------ECSCCCSCCCCBCCCEEECTTCEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCcc-------------------ccccchhhccCCCCCEEEccCCCc
Confidence 4777777777665 3334443 455555555544 444334444556666666666655
Q ss_pred CChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCC-CCCChhHHH-HHhhcCCCcEEEccCC-CCCcc
Q 011674 154 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEM-VACVGANLRNLNLSNT-RFSSA 228 (480)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~L~~L~L~~n-~l~~~ 228 (480)
........+..+++|++|++++|.+... ..+..+++|++|++++| .+++..... +..+ ++|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEK 184 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChH
Confidence 4321112344566777777777766543 45666777888888877 566543333 4444 78888888888 77766
Q ss_pred hHHHHhcCCC-CCcEEEccCC--CCC-hHHHHHhhcCCCccEEEccCcc-ccccccccccchhhhhcHHHhhcCCCCCEE
Q 011674 229 GVGILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERL 303 (480)
Q Consensus 229 ~~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 303 (480)
........++ +|++|++++| .++ ...+..+..+++|+.|++++|. +++..+. .+..+++|++|
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------~l~~l~~L~~L 252 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------EFFQLNYLQHL 252 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------GGGGCTTCCEE
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------HHhCCCCCCEe
Confidence 5444445677 8888888887 455 3445566678888888888887 5544443 56777888888
Q ss_pred eCCCCC-ccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCC
Q 011674 304 NLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 367 (480)
Q Consensus 304 ~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 367 (480)
++++|. +.+.....+..+++|++|++++| +.+.....+. .+++.|++++|.+++..+..+.
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 888884 43333345677888888888888 5554333332 2244555788888776665544
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.7e-22 Score=193.62 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=141.0
Q ss_pred EEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHH----HHHcCCC-CCCEEEcCCCCCCHHHHhhccCC-----C
Q 011674 6 ELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI----ALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVL-----T 75 (480)
Q Consensus 6 ~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~ 75 (480)
.+.|+.+ .++...+..+...++|++|++++|.+++..+ ..|..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3577888 6776666666677779999999999988777 7788898 99999999999988766677654 9
Q ss_pred CCCEEEccCCcCCchhhHhhc----CC-CCCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCC-CCCccEEEcc
Q 011674 76 KLEYLDLWGSQVSNRGAAVLK----MF-PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNEN-KAPLAKISLA 149 (480)
Q Consensus 76 ~L~~L~l~~~~i~~~~~~~l~----~l-~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~ 149 (480)
+|++|++++|.+++..+..+. .+ ++|++|++++|.+++.+. ..+...+.. .++|++|+++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--------------~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS--------------SEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH--------------HHHHHHHTTSCTTCCEEECT
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH--------------HHHHHHHHhCCCceeEEEcc
Confidence 999999999999877766443 34 677777777777665431 011111111 2344444444
Q ss_pred CCCCCChhHH---HhhhcCC-CceEEEccCCccCcch------hhccC-CCCCeeeCcCCCCCChhHHH----HHhhcCC
Q 011674 150 GTTFINEREA---FLYIETS-LLSFLDVSNSSLSRFC------FLTQM-KALEHLDLSSSMIGDDSVEM----VACVGAN 214 (480)
Q Consensus 150 ~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~l~~~~------~~~~~-~~L~~L~l~~n~l~~~~~~~----~~~~~~~ 214 (480)
+|.+...... ..+...+ +|++|++++|.++... .+..+ ++|++|++++|.+++.+... +....++
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 4444321110 0112233 5666666666554431 23344 36777777777666543332 2222246
Q ss_pred CcEEEccCCCCCcchHHH---HhcCCCCCcEEEccCCC
Q 011674 215 LRNLNLSNTRFSSAGVGI---LAGHLPNLEILSLSGTQ 249 (480)
Q Consensus 215 L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~ 249 (480)
|++|++++|.+++.+... ....+++|+.|++++|.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 666666666666654422 22344556666666555
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1e-22 Score=197.06 Aligned_cols=256 Identities=17% Similarity=0.192 Sum_probs=154.2
Q ss_pred chhccCCCCCCccEEEccCCCCCChhHHH---hhhcCCCceEEEccCCccCcc------------hhhccCCCCCeeeCc
Q 011674 132 SILEGNENKAPLAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSRF------------CFLTQMKALEHLDLS 196 (480)
Q Consensus 132 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~------------~~~~~~~~L~~L~l~ 196 (480)
.++..+..+++|++|++++|.+....... .+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 33333344444555555554444322111 123455555555555433211 123566777777777
Q ss_pred CCCCCCh----hHHHHHhhcCCCcEEEccCCCCCcchHHHHhc---CC---------CCCcEEEccCCCCChH-HH---H
Q 011674 197 SSMIGDD----SVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDDY-AI---S 256 (480)
Q Consensus 197 ~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~l~~~-~~---~ 256 (480)
+|.++.. .+..+..+ ++|++|+|++|.++..++..+.. .+ ++|++|++++|+++.. .+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 7777763 33445555 77777777777776554443322 12 7888888888887732 22 3
Q ss_pred HhhcCCCccEEEccCccccccccccccchhhhhcHH-HhhcCCCCCEEeCCCCCcc----ccccccccccccCceeecCC
Q 011674 257 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT-ALQNLNHLERLNLEQTQVS----DATLFPLSTFKELIHLSLRN 331 (480)
Q Consensus 257 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~L~~ 331 (480)
.+..+++|+.|++++|.++.... ...+. .+..+++|++|+|++|.++ ...+..+..+++|++|+|++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~--------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGI--------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHH--------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHhCCCcCEEECcCCCCCHhHH--------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 55677788888888887762200 00111 4677888888888888875 33455677788888888888
Q ss_pred CCCChhh----HHhh--cCCCCCCEEEecCCccCcc----cccCC-CCCCCCcEEEcCCCcccCHHH-HHHHHHhCC
Q 011674 332 ASLTDVS----LHQL--SSLSKLTNLSIRDAVLTNS----GLGSF-KPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP 396 (480)
Q Consensus 332 n~l~~~~----~~~l--~~l~~L~~L~l~~n~i~~~----~~~~~-~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~ 396 (480)
|.+++.. +..+ ..+++|++|++++|.+++. .+..+ ..+++|++|++++|++..... +..+....+
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 8887762 3444 3388888888888888872 33333 446889999999998744432 344444333
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.1e-21 Score=184.32 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=141.4
Q ss_pred CCceEEEccCCccCcc-hhhccCCCCCeeeCcCCCCCCh-hHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 166 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
+.++.|++++|.+.+. +.+..+++|++|++++|.++.. .+..+..+ ++|++|++++|.+++..+..+ ..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence 5666666666665554 3445567777777777766654 33334444 777777777777666555555 347777777
Q ss_pred EccCC-CCChH-HHHHhhcCCCccEEEccCc-ccccc-ccccccchhhhhcHHHhhcCC-CCCEEeCCCC--Ccc-cccc
Q 011674 244 SLSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGF-IQQVGAETDLVLSLTALQNLN-HLERLNLEQT--QVS-DATL 315 (480)
Q Consensus 244 ~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~n--~l~-~~~~ 315 (480)
++++| .+++. .+..+..+++|++|++++| .+++. .+. .+..++ +|++|++++| .++ ...+
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV------------AVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH------------HHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH------------HHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 77777 56653 4444666777777777777 66543 122 466677 7777777777 343 2234
Q ss_pred ccccccccCceeecCCCC-CChhhHHhhcCCCCCCEEEecCC-ccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHH
Q 011674 316 FPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 393 (480)
Q Consensus 316 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 393 (480)
..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.......+..+++|++|++++| +++..+..+..
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~ 293 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKE 293 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHH
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHh
Confidence 445567777777777776 66655666777777777777777 444444445666778888888887 56666666666
Q ss_pred hCCceeee
Q 011674 394 MHPRIEVW 401 (480)
Q Consensus 394 ~~~~l~~~ 401 (480)
..+.+++.
T Consensus 294 ~l~~L~l~ 301 (336)
T 2ast_B 294 ALPHLQIN 301 (336)
T ss_dssp HSTTSEES
T ss_pred hCcceEEe
Confidence 67777654
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.5e-22 Score=185.01 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=149.9
Q ss_pred CCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcch--hhccCCCCCeeeCcCCCCCCh
Q 011674 126 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDD 203 (480)
Q Consensus 126 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~~ 203 (480)
.+..+..+|..+. ++|++|++++|.+..++.. .+.++++|++|++++|.+..++ .+..+++|++|++++|.++..
T Consensus 15 ~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 15 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TTSCCSSCCSSSC--TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCccccCCCCC--CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3333444444332 3455555555555444331 2335566666666666666552 466677777777777777665
Q ss_pred hHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChH-HHHHhhcCCCccEEEccCccccccccccc
Q 011674 204 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVG 282 (480)
Q Consensus 204 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 282 (480)
.+..+..+ ++|++|++++|.+.......+ ..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+.
T Consensus 92 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 167 (276)
T 2z62_A 92 ALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-- 167 (276)
T ss_dssp CTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--
T ss_pred ChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH--
Confidence 55555555 777777777777776655443 5688888999988888764 366788889999999999988877554
Q ss_pred cchhhhhcHHHhhcCCCCC----EEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCcc
Q 011674 283 AETDLVLSLTALQNLNHLE----RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 358 (480)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 358 (480)
.+..+++|+ +|++++|.+....+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 168 ----------~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 168 ----------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp ----------GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ----------HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 344444444 899999999886655544 34899999999999887766778899999999999988
Q ss_pred Cc
Q 011674 359 TN 360 (480)
Q Consensus 359 ~~ 360 (480)
..
T Consensus 237 ~c 238 (276)
T 2z62_A 237 DC 238 (276)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.3e-22 Score=181.55 Aligned_cols=203 Identities=18% Similarity=0.268 Sum_probs=141.0
Q ss_pred CCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCC
Q 011674 119 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 198 (480)
Q Consensus 119 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n 198 (480)
+.+.++++++.++.+|..+. +++++|++++|.+..++. ..+..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPS-----------------------KAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCT-----------------------TSSSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCH-----------------------HHhcCCCCCCEEECCCC
Confidence 45566666666666655442 345555555554443332 13445555555555555
Q ss_pred CCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccc
Q 011674 199 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 278 (480)
Q Consensus 199 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 278 (480)
.++......+..+ ++|++|++++|.+...+...+ ..+++|++|++++|.++...+..|..+++|+.|++++|.+++..
T Consensus 72 ~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 72 KLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp CCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 5554433333334 566666666666666554443 45778888888888887777667778888888888888888776
Q ss_pred cccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCcc
Q 011674 279 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 358 (480)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 358 (480)
+. .|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 150 ~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 150 KG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Hh------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 65 578888999999999988887777788888999999999988887666788889999999999887
Q ss_pred Cc
Q 011674 359 TN 360 (480)
Q Consensus 359 ~~ 360 (480)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=4.4e-22 Score=182.72 Aligned_cols=195 Identities=16% Similarity=0.224 Sum_probs=115.5
Q ss_pred CCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEE
Q 011674 165 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 244 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 244 (480)
+++|+.|++++|.+..++.+..+++|++|++++|.+... ..+..+ ++|++|++++|.++......+ ..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEEE
Confidence 455555555555555555555556666666666555542 133333 556666666666655544333 3466666666
Q ss_pred ccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccC
Q 011674 245 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 324 (480)
Q Consensus 245 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 324 (480)
+++|.+++..+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|++++..+..+..+++|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 666666655555556666666666666666655544 45666666666666666666555556666666
Q ss_pred ceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 325 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 325 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
++|++++|.+++..+..+..+++|++|++++|.+.+ .++.++.++++.|.+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 666666666666555556666666666666666542 244566665555543
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=182.23 Aligned_cols=194 Identities=24% Similarity=0.271 Sum_probs=154.9
Q ss_pred hhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCc
Q 011674 23 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS 102 (480)
Q Consensus 23 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 102 (480)
+..+++|++|++++|.++... .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 345778888888888887632 57788888888888888877644 78888888888888888764 2577888888
Q ss_pred EEEccccCCCCCC---CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccC
Q 011674 103 FLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 179 (480)
Q Consensus 103 ~L~l~~n~l~~l~---~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 179 (480)
+|++++|.++.++ .+++|++|++++|.+..++. +..+++|+.|++++|.+...++ +..+++|+.|++++|.+.
T Consensus 111 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccC
Confidence 8888888877644 67888888888888887766 6688889999999988887665 457889999999999998
Q ss_pred cchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcch
Q 011674 180 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 229 (480)
Q Consensus 180 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 229 (480)
.++.+..+++|++|++++|.+....+ +..+ ++|+.|++++|.++..+
T Consensus 187 ~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l-~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 187 DISPLASLPNLIEVHLKNNQISDVSP--LANT-SNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCBCGG--GTTC-TTCCEEEEEEEEEECCC
T ss_pred cChhhcCCCCCCEEEccCCccCcccc--ccCC-CCCCEEEccCCeeecCC
Confidence 88778889999999999998887653 5555 88999999998876644
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2e-21 Score=178.36 Aligned_cols=203 Identities=18% Similarity=0.234 Sum_probs=177.9
Q ss_pred CCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEc
Q 011674 166 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 245 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 245 (480)
..+..+.+..+.+........+++|+.|++++|.+.... .+..+ ++|+.|++++|.+.+.. . +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--A-LKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--h-hcCCCCCCEEEC
Confidence 445566777777777777888999999999999987643 35556 99999999999998864 3 357999999999
Q ss_pred cCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCc
Q 011674 246 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 325 (480)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 325 (480)
++|.+++..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 99999988877789999999999999999988776 688999999999999999988888889999999
Q ss_pred eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHH
Q 011674 326 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 386 (480)
Q Consensus 326 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 386 (480)
+|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.+
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 9999999999887777899999999999999999988877888999999999999987654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9e-21 Score=177.14 Aligned_cols=189 Identities=20% Similarity=0.317 Sum_probs=84.0
Q ss_pred CCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEc
Q 011674 166 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 245 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 245 (480)
++|+.|++++|.+..++.+..+++|++|++++|.+..... +..+ ++|++|++++|.++... . +..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--A-IAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--G-GTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCCCch--h-hcCCCCCCEEEC
Confidence 3444444444444444444444444444444444443322 2333 44444444444444432 1 123444555555
Q ss_pred cCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCc
Q 011674 246 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 325 (480)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 325 (480)
++|.+++..+ +..+++|+.|++++|.+++.. .+..+++|++|++++|.+++..+ +..+++|+
T Consensus 115 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCCCCCchh--hcCCCCCCEEECCCCccCcCc--------------cccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 4444444321 444445555555554444331 13444455555555554444322 44445555
Q ss_pred eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcc
Q 011674 326 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 326 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~ 382 (480)
+|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 55555554444322 4444555555555555444331 34445555555555543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.5e-21 Score=174.60 Aligned_cols=189 Identities=17% Similarity=0.262 Sum_probs=154.7
Q ss_pred CCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEE
Q 011674 189 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 268 (480)
Q Consensus 189 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 268 (480)
..++++++++.++..... .+++++.|++++|.+.......+ ..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~----~~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG----IPADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSC----CCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCC----CCCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 455666666665543211 12567888888888777766555 5688999999999988887777788899999999
Q ss_pred ccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCC
Q 011674 269 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 348 (480)
Q Consensus 269 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 348 (480)
+++|.+++..+. .|..+++|++|++++|.++...+..+..+++|++|+|++|++++..+..+..+++|
T Consensus 90 L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 90 LANNQLASLPLG------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp CTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcccccChh------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 999999887766 68889999999999999998877778899999999999999998877778999999
Q ss_pred CEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCH-HHHHHHHHh
Q 011674 349 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DAILQFCKM 394 (480)
Q Consensus 349 ~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~ 394 (480)
++|++++|.+++..+..+..+++|++|++++|++.++ +.+.++..+
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 9999999999988887888899999999999999877 666555443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.6e-22 Score=184.18 Aligned_cols=221 Identities=18% Similarity=0.142 Sum_probs=176.4
Q ss_pred CCcEEecCCCCCCChhhHHhh---hCCCCCcEEEcCCCcCCHHHHHHH--cCCCCCCEEEcCCCCCCHHHH----hhccC
Q 011674 3 CLKELDLSRCVKVTDAGMKHL---LSISTLEKLWLSETGLTADGIALL--SSLQNLSVLDLGGLPVTDLVL----RSLQV 73 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~----~~~~~ 73 (480)
.++.+.+.++ .+++.....+ ..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4688889888 5665554432 346789999999999988777777 889999999999999886322 45568
Q ss_pred CCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCC---------CCCCCCCCEEEcCCCcccchhcc----CCCC
Q 011674 74 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDSILEG----NENK 140 (480)
Q Consensus 74 l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L~l~~~~l~~~~~~----~~~~ 140 (480)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+ +..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 9999999999999998888889999999999999998653 24788999999999999866653 3478
Q ss_pred CCccEEEccCCCCCCh-hHHHh-hhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEE
Q 011674 141 APLAKISLAGTTFINE-REAFL-YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 218 (480)
Q Consensus 141 ~~L~~L~l~~~~~~~~-~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 218 (480)
++|++|++++|.+... |..+. +..+++|++|++++|.++.++... .++|++|++++|.+++... +..+ ++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~--~~~l-~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ--PDEL-PEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC--TTSC-CCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch--hhhC-CCccEE
Confidence 9999999999999876 33221 112379999999999999774322 3899999999999987422 3444 899999
Q ss_pred EccCCCCCcc
Q 011674 219 NLSNTRFSSA 228 (480)
Q Consensus 219 ~L~~n~l~~~ 228 (480)
++++|.+++.
T Consensus 300 ~L~~N~l~~~ 309 (310)
T 4glp_A 300 TLDGNPFLVP 309 (310)
T ss_dssp ECSSTTTSCC
T ss_pred ECcCCCCCCC
Confidence 9999998764
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=7.3e-21 Score=175.96 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=125.4
Q ss_pred CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeC
Q 011674 116 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 195 (480)
Q Consensus 116 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 195 (480)
.++++++++++++.++.+|..+. ++++.|++++|.+..+++. .+..+++|++|++++|.+..++....+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 45566666666666666665553 4666666666666554432 24456777777777777666654455566666666
Q ss_pred cCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCcccc
Q 011674 196 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 275 (480)
Q Consensus 196 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~ 275 (480)
++|.+.. .+. .+..+++|++|++++|+++...+..|..+++|+.|++++|.++
T Consensus 85 s~N~l~~-------------------------l~~--~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 85 SHNQLQS-------------------------LPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CSSCCSS-------------------------CCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCc-------------------------Cch--hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 6665542 211 1134556666666666666555555666666777777777666
Q ss_pred ccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecC
Q 011674 276 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 355 (480)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 355 (480)
+.++. .|..+++|+.|++++|+++...+..+..+++|++|+|++|.++.. +..+...++|+.+++++
T Consensus 138 ~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 138 TLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCS
T ss_pred ccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCC
Confidence 65554 466667777777777777766555666677777777777777654 34455566777777777
Q ss_pred CccCc
Q 011674 356 AVLTN 360 (480)
Q Consensus 356 n~i~~ 360 (480)
|.+..
T Consensus 205 Np~~C 209 (290)
T 1p9a_G 205 NPWLC 209 (290)
T ss_dssp CCBCC
T ss_pred CCccC
Confidence 76643
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=183.68 Aligned_cols=221 Identities=20% Similarity=0.181 Sum_probs=177.7
Q ss_pred CCCCCcEEEcCCCcCCHHHHHH---HcCCCCCCEEEcCCCCCCHHHHhhc--cCCCCCCEEEccCCcCCchhh----Hhh
Q 011674 25 SISTLEKLWLSETGLTADGIAL---LSSLQNLSVLDLGGLPVTDLVLRSL--QVLTKLEYLDLWGSQVSNRGA----AVL 95 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~i~~~~~----~~l 95 (480)
....++.+.+.++.++...... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 4456889999999887653322 2256779999999999998888887 899999999999999987433 445
Q ss_pred cCCCCCcEEEccccCCCCCC-----CCCCCCEEEcCCCcccc---hhccC--CCCCCccEEEccCCCCCChhHHH--hhh
Q 011674 96 KMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS---ILEGN--ENKAPLAKISLAGTTFINEREAF--LYI 163 (480)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~~~~~~~~~--~~~ 163 (480)
..+++|++|++++|.+..++ .+++|++|++++|.+.. ++... ..+++|++|++++|.+...+... .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 68999999999999998654 78999999999999764 44333 48899999999999998765532 245
Q ss_pred cCCCceEEEccCCccCcc--hhhccC---CCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCC
Q 011674 164 ETSLLSFLDVSNSSLSRF--CFLTQM---KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 238 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~--~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 238 (480)
.+++|++|++++|.+... +.+..+ ++|++|++++|.++.. +..+ +++|++|++++|.+++.+. ...++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~---~~~L~~L~Ls~N~l~~~~~---~~~l~ 294 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL---PAKLRVLDLSSNRLNRAPQ---PDELP 294 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC---CSCCSCEECCSCCCCSCCC---TTSCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh---cCCCCEEECCCCcCCCCch---hhhCC
Confidence 789999999999999886 334444 7999999999999854 3222 2799999999999998643 25689
Q ss_pred CCcEEEccCCCCCh
Q 011674 239 NLEILSLSGTQIDD 252 (480)
Q Consensus 239 ~L~~L~l~~n~l~~ 252 (480)
+|+.|++++|.+++
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999999874
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=3.7e-21 Score=173.09 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=163.5
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCC-CCHHHHhhccCCCCCCEEEccC-CcCCchhhHhhcCCCCCcEE
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L 104 (480)
++|++|++++|.+++..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+.+|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999999877789999999999999997 8887777899999999999998 99998888889999999999
Q ss_pred EccccCCCCCC---CCCCCC---EEEcCCC-cccchhcc-CCCCCCcc-EEEccCCCCCChhHHHhhhcCCCceEEEccC
Q 011674 105 NLAWTGVTKLP---NISSLE---CLNLSNC-TIDSILEG-NENKAPLA-KISLAGTTFINEREAFLYIETSLLSFLDVSN 175 (480)
Q Consensus 105 ~l~~n~l~~l~---~~~~L~---~L~l~~~-~l~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (480)
++++|.++.++ .+++|+ +|++++| .+..++.. +..+++|+ +|++++|.+..++... |.. ++|+.|++++
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-FNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT-TTT-CEEEEEECTT
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh-cCC-CCCCEEEcCC
Confidence 99999988776 566777 9999999 99988876 45899999 9999999998766643 333 7999999999
Q ss_pred Cc-cCcc--hhhccC-CCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCC
Q 011674 176 SS-LSRF--CFLTQM-KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 223 (480)
Q Consensus 176 ~~-l~~~--~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 223 (480)
|. ++.+ ..+..+ ++|++|++++|.++..... .+ ++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GL-EHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TC-TTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hh-ccCceeeccCc
Confidence 95 8887 457788 9999999999999865443 23 88999999876
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.2e-20 Score=169.68 Aligned_cols=195 Identities=14% Similarity=0.198 Sum_probs=126.7
Q ss_pred CceEEEccCCccCcch--hhccCCCCCeeeCcCCC-CCChhHHHHHhhcCCCcEEEccC-CCCCcchHHHHhcCCCCCcE
Q 011674 167 LLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI 242 (480)
Q Consensus 167 ~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~ 242 (480)
++++|++++|.++.++ .+..+++|++|++++|. ++......+..+ ++|++|++++ |.++..+...+ ..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence 3444444444444441 34445555555555553 444333333333 5566666665 55555544443 45677777
Q ss_pred EEccCCCCChHHHHHhhcCCCcc---EEEccCc-cccccccccccchhhhhcHHHhhcCCCCC-EEeCCCCCcccccccc
Q 011674 243 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFP 317 (480)
Q Consensus 243 L~l~~n~l~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~ 317 (480)
|++++|.+++... +..+++|+ .|++++| .+++..+. .|.++++|+ +|++++|.++.+.+..
T Consensus 110 L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp EEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred EeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCcccCHhh
Confidence 7777777665322 56666666 8888888 77766655 577888888 8888888887655555
Q ss_pred ccccccCceeecCCCC-CChhhHHhhcCC-CCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCc
Q 011674 318 LSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~ 381 (480)
+.. ++|++|++++|. ++...+..+..+ ++|+.|++++|.++..... .+++|+.|++.+++
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 555 788888888884 887766778888 8899999999888765443 45788888888875
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=7.1e-20 Score=165.94 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=138.3
Q ss_pred CCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEc
Q 011674 166 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 245 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 245 (480)
...+.++++++.+..++.- ..+.++.|++++|.+....+..+..+ ++|++|++++|.++...+..+ ..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEEC
Confidence 3456666666666665422 12567777777777776665556655 777888888877777665544 46788888888
Q ss_pred cCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCc
Q 011674 246 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 325 (480)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 325 (480)
++|.++...+..|..+++|+.|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 88888877777778888888888888888877665 577888899999999988887777788888999
Q ss_pred eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 326 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 326 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
+|+|++|++++..+..+..+++|++|++++|.+...
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999988887777788888999999999887653
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.3e-19 Score=158.78 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=142.8
Q ss_pred cEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhh
Q 011674 216 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 295 (480)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (480)
+.++++++.++..+.. ..++++.|++++|.++...+..|..+++|+.|++++|.+.+..+. .|.
T Consensus 14 ~~v~c~~~~l~~iP~~----l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN----LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AFQ 77 (220)
T ss_dssp TEEECTTSCCSSCCSS----CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TTT
T ss_pred CEEEcCCCCcCcCCCc----cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hhh
Confidence 5677777777766542 246889999999998887777788899999999999999887776 789
Q ss_pred cCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEE
Q 011674 296 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 375 (480)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l 375 (480)
++++|++|+|++|.++.+.+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+++.....+..+++|++|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 99999999999999998877778899999999999999999888889999999999999999999888888889999999
Q ss_pred EcCCCcccCHHHHHHHHHhC
Q 011674 376 DLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 376 ~l~~n~~~~~~~~~~~~~~~ 395 (480)
++++|++.|++.+.|+..+.
T Consensus 158 ~L~~N~~~c~c~l~~l~~~l 177 (220)
T 2v9t_B 158 HLAQNPFICDCHLKWLADYL 177 (220)
T ss_dssp ECCSSCEECSGGGHHHHHHH
T ss_pred EeCCCCcCCCCccHHHHHHH
Confidence 99999999999999887654
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.5e-18 Score=160.66 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=121.2
Q ss_pred cCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 164 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
.+++|+.|++++|.+..++.+..+++|++|++++|.++...+ +..+ ++|+.|++++|.++.... +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence 456677777777777777667777777777777777766544 4444 677777777777766433 2457777777
Q ss_pred EccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccccc
Q 011674 244 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 323 (480)
Q Consensus 244 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 323 (480)
++++|++++. ..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+..+ +..+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~------------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h------------hhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 7777777764 3466777777777777777665 2 46677777777887777776544 667777
Q ss_pred CceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccc
Q 011674 324 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 363 (480)
Q Consensus 324 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 363 (480)
|++|++++|.+++.. .+..+++|+.|++++|.++..+.
T Consensus 180 L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 180 LQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence 777777777777653 36777777777777777766443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=156.66 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=138.9
Q ss_pred CcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHH-HHhhcCCCccEEEccCccccccccccccchhhhhcHHH
Q 011674 215 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 293 (480)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 293 (480)
-+.+++++|.++..+. ...+.+++|++++|.++...+ ..|..+++|+.|++++|.+++..+. .
T Consensus 13 ~~~l~~s~n~l~~iP~----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A 76 (220)
T ss_dssp TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred CCEeEeCCCCcccCcc----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence 3567777777776543 124567888888888877633 4477888999999999998887765 6
Q ss_pred hhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCc
Q 011674 294 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 373 (480)
Q Consensus 294 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 373 (480)
|.++++|++|+|++|.++...+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 88899999999999999988888899999999999999999988778889999999999999999998888899999999
Q ss_pred EEEcCCCcccCHHHHHHHHHhCC
Q 011674 374 LLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 374 ~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
.|++++|++.|++.+.++..+..
T Consensus 157 ~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 157 TLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp EEECCSCCEECSGGGHHHHHHHH
T ss_pred EEEecCcCCcCCCchHHHHHHHH
Confidence 99999999999998888866543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.3e-18 Score=159.28 Aligned_cols=189 Identities=21% Similarity=0.301 Sum_probs=161.9
Q ss_pred CceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEcc
Q 011674 167 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 246 (480)
Q Consensus 167 ~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 246 (480)
.+..+.+..+.+........+++|++|++++|.+.... .+..+ ++|++|++++|.+++... +..+++|+.|+++
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEECC
Confidence 34445567777777777788999999999999988653 35565 999999999999998776 3679999999999
Q ss_pred CCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCce
Q 011674 247 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 326 (480)
Q Consensus 247 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 326 (480)
+|.+++.. .+..+++|+.|++++|.+.+. . .+..+++|++|++++|.+++. ..+..+++|++
T Consensus 99 ~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~--~------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 99 ENKVKDLS--SLKDLKKLKSLSLEHNGISDI--N------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp SSCCCCGG--GGTTCTTCCEEECTTSCCCCC--G------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred CCcCCCCh--hhccCCCCCEEECCCCcCCCC--h------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 99998753 488999999999999999875 2 478999999999999999886 57889999999
Q ss_pred eecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCccc
Q 011674 327 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 383 (480)
Q Consensus 327 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~ 383 (480)
|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 161 L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEE
T ss_pred EEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCccc
Confidence 9999999998764 889999999999999998753 4788899999999999863
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.1e-19 Score=171.83 Aligned_cols=185 Identities=19% Similarity=0.222 Sum_probs=150.0
Q ss_pred CeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEcc
Q 011674 191 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 270 (480)
Q Consensus 191 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 270 (480)
+.++++++.++.... .++..++.|+|++|.++......+...+++|+.|++++|+++...+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~~iP~----~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ----SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCS----SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCc----cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 466777766665321 1225678888888888887766553268899999999999998877788899999999999
Q ss_pred CccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhh---cCCCC
Q 011674 271 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK 347 (480)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~ 347 (480)
+|.++...+. .|.++++|++|+|++|.+....+..+..+++|++|+|++|.++......+ ..+++
T Consensus 97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 9999887666 68899999999999999998888889999999999999999988766555 56899
Q ss_pred CCEEEecCCccCcccccCCCCCCC--CcEEEcCCCcccCHHHHHHH
Q 011674 348 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF 391 (480)
Q Consensus 348 L~~L~l~~n~i~~~~~~~~~~~~~--L~~l~l~~n~~~~~~~~~~~ 391 (480)
|+.|++++|.++......+..++. ++.|++.+|++.|++.+.++
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 999999999998876666666665 48899999999999988765
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=6.7e-18 Score=171.07 Aligned_cols=176 Identities=23% Similarity=0.302 Sum_probs=130.0
Q ss_pred cCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEE
Q 011674 164 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 243 (480)
Q Consensus 164 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 243 (480)
.++.|+.|++++|.+..++.+..+++|+.|++++|.+....+ +..+ ++|+.|+|++|.+.... . +..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~--~-l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDENKIKDLS--S-LKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCT--T-STTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCCCCCCCh--h-hccCCCCCEE
Confidence 456677777777777777677777777777777777766544 4455 77777777777777654 2 2467888888
Q ss_pred EccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccccccc
Q 011674 244 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 323 (480)
Q Consensus 244 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 323 (480)
+|++|.+.+. ..+..+++|+.|++++|.+.+. . .+..+++|+.|+|++|.+.+..+ +..+++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~ 176 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G------------GGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--h------------hhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence 8888887764 3477788888888888888765 2 47788888888888888887655 777888
Q ss_pred CceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccC
Q 011674 324 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 365 (480)
Q Consensus 324 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 365 (480)
|+.|+|++|.+++. ..+..+++|+.|++++|.+.+.+...
T Consensus 177 L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 88888888888775 35778888888888888887654433
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.4e-18 Score=148.69 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=71.2
Q ss_pred CCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEE
Q 011674 26 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 105 (480)
Q Consensus 26 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 105 (480)
+++|++|++++|.++... .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555444321 344445555555555443332 2444445555555555554444444444455555555
Q ss_pred ccccCCCC-----CCCCCCCCEEEcCCCc-ccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccC
Q 011674 106 LAWTGVTK-----LPNISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 179 (480)
Q Consensus 106 l~~n~l~~-----l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 179 (480)
+++|.+++ +..+++|++|++++|. +..++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 55554443 2244555555555554 44444 3445556666666666555543 2335666666666666654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.7e-18 Score=172.91 Aligned_cols=192 Identities=21% Similarity=0.294 Sum_probs=165.1
Q ss_pred CCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEE
Q 011674 165 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 244 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 244 (480)
+..+..+.+..+.+.....+..++.|+.|++++|.+.... .+..+ ++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence 3445556677777877777888999999999999988753 45666 999999999999998776 35799999999
Q ss_pred ccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccC
Q 011674 245 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 324 (480)
Q Consensus 245 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 324 (480)
|++|.+.+.. .+..+++|+.|++++|.+.+. + .+..+++|+.|+|++|.+.+. ..+..+++|
T Consensus 94 Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l-~-------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 155 (605)
T 1m9s_A 94 LDENKIKDLS--SLKDLKKLKSLSLEHNGISDI-N-------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKL 155 (605)
T ss_dssp CCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC-G-------------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTC
T ss_pred CcCCCCCCCh--hhccCCCCCEEEecCCCCCCC-c-------------cccCCCccCEEECCCCccCCc--hhhcccCCC
Confidence 9999998753 688999999999999999875 2 478999999999999999886 678899999
Q ss_pred ceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 325 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 325 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
+.|+|++|.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|++..
T Consensus 156 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 156 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 999999999998765 88999999999999999875 457888999999999998743
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.4e-17 Score=166.91 Aligned_cols=182 Identities=21% Similarity=0.189 Sum_probs=87.5
Q ss_pred CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcc
Q 011674 28 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 107 (480)
Q Consensus 28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 107 (480)
+|++|++++|.+++ +|..+ +++|++|++++|.++.. | ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 55555555555544 22212 24455555555555432 2 334555555555555554 222 322 55555555
Q ss_pred ccCCCCCC-CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhcc
Q 011674 108 WTGVTKLP-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQ 186 (480)
Q Consensus 108 ~n~l~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 186 (480)
+|.+++++ .+++|++|++++|.++.+|. .+++|+.|++++|.+..++. + . ++|+.|++++|.++.++.+..
T Consensus 129 ~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l--~--~~L~~L~Ls~N~L~~lp~~~~ 200 (571)
T 3cvr_A 129 NNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-L--P--ESLEALDVSTNLLESLPAVPV 200 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-C--C--TTCCEEECCSSCCSSCCCCC-
T ss_pred CCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-h--h--CCCCEEECcCCCCCchhhHHH
Confidence 55555444 34455555555555555444 34455555555555555443 1 1 555555555555554433221
Q ss_pred CCCC-------CeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHH
Q 011674 187 MKAL-------EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 232 (480)
Q Consensus 187 ~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 232 (480)
+| +.|++++|.++.. +..+..+ ++|+.|++++|.+++..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l-~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHI-PENILSL-DPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ---------CCEEEECCSSCCCCC-CGGGGGS-CTTEEEECCSSSCCHHHHHH
T ss_pred --hhhcccccceEEecCCCcceec-CHHHhcC-CCCCEEEeeCCcCCCcCHHH
Confidence 44 5555555555542 2223333 55555555555555544443
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.2e-17 Score=148.76 Aligned_cols=158 Identities=20% Similarity=0.221 Sum_probs=136.4
Q ss_pred CCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHH
Q 011674 213 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 292 (480)
Q Consensus 213 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 292 (480)
...+.++.+++.++..+. +..++|+.|++++|.+++..+..|..+++|+.|++++|.+....+.
T Consensus 19 Cs~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------ 82 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------ 82 (229)
T ss_dssp EETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred EeCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------
Confidence 345677788777777664 2357899999999999988788888999999999999999877665
Q ss_pred HhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCC
Q 011674 293 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 372 (480)
Q Consensus 293 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 372 (480)
.|..+++|++|+|++|+++...+..+..+++|++|+|++|+++.+ +..+..+++|++|++++|.++......+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 688999999999999999988777889999999999999999865 5677899999999999999998877778889999
Q ss_pred cEEEcCCCcccCHHH
Q 011674 373 KLLDLHGGWLLTEDA 387 (480)
Q Consensus 373 ~~l~l~~n~~~~~~~ 387 (480)
+.|++.+|++.|++.
T Consensus 162 ~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 162 THAYLFGNPWDCECR 176 (229)
T ss_dssp CEEECTTSCBCTTBG
T ss_pred CEEEeeCCCccCCcc
Confidence 999999999988764
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2.1e-18 Score=164.22 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=109.2
Q ss_pred EEEccccCCCCCCC--CCCCCEEEcCCCcccchhccC-CCCCCccEEEccCCCCCChhHHHhhhcCCCceE-EEccCCcc
Q 011674 103 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSSL 178 (480)
Q Consensus 103 ~L~l~~n~l~~l~~--~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~l 178 (480)
+++.++++++.+|. .+++++|++++|.++.+|+.. ..+++|++|++++|.+.+..+...|.+++++.. +.+++|.+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 34444444444442 235666666666666666543 356666666666666544333333445555443 44445555
Q ss_pred Ccc--hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccC-CCCCcchHHHHhcCCCCCcEEEccCCCCChHHH
Q 011674 179 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 255 (480)
Q Consensus 179 ~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 255 (480)
..+ ..+..+++|++|++++|.+.......+... .++..+++.+ +.+.......+......
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~---------------- 155 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFE---------------- 155 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSS----------------
T ss_pred cccCchhhhhccccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchh----------------
Confidence 555 245556666666666665544322222222 3334444433 23333333222221223
Q ss_pred HHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCC-CCccccccccccccccCceeecCCCCC
Q 011674 256 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASL 334 (480)
Q Consensus 256 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l 334 (480)
++.|++++|.++...+. .| ...+|+++++.+ |.++.+.+..|..+++|++|++++|++
T Consensus 156 --------l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 156 --------SVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp --------CEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred --------hhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 44455555554443332 12 223455555542 344444444455555555555555555
Q ss_pred ChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCC
Q 011674 335 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 335 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n 380 (480)
+.+.+. .+.+|+.|.+.++.-....+ .+..+++|+.+++.++
T Consensus 215 ~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 215 HSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 544321 23344444444432222222 2444556666666543
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=4.8e-18 Score=149.24 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=108.4
Q ss_pred EEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCC
Q 011674 170 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 249 (480)
Q Consensus 170 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 249 (480)
.++.+++.+..++. ...++|++|++++|.++......+..+ ++|++|++++|.++..+...+ ..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCc
Confidence 34444444444321 123455666666665554444334444 566666666666665544333 356677777777777
Q ss_pred CChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeec
Q 011674 250 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 329 (480)
Q Consensus 250 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 329 (480)
++...+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 6665555566677777777777777665554 4666777777777777777665555667777777777
Q ss_pred CCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCC
Q 011674 330 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 369 (480)
Q Consensus 330 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~ 369 (480)
++|.+. +.+++|++|++..|.+++..+..+..+
T Consensus 156 ~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 156 HDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 777554 245667777777777777666555444
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.7e-18 Score=163.36 Aligned_cols=282 Identities=16% Similarity=0.132 Sum_probs=158.7
Q ss_pred CCcEEecCCCCCCChhhHHhhhC-CCCCcEEEcCCCcCC--HHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccC------
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSETGLT--ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV------ 73 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~------ 73 (480)
+|++|.++++ +.......+.. +++|++|||++|.+. .... +.++.++.+.+..+.+ ...+|.+
T Consensus 26 ~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 26 SITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred ceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhcccccccc
Confidence 4677777774 45555666665 777888888877776 2111 1222234444444433 3367778
Q ss_pred --CCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCC
Q 011674 74 --LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 151 (480)
Q Consensus 74 --l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~ 151 (480)
|++|+.+++.+ .++.+...+|..|++|+++++..|.+..++.- .+..+.++..+.....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~------------------aF~~~~~l~~l~~~~~ 158 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE------------------ALADSVTAIFIPLGSS 158 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT------------------SSCTTTCEEEECTTCT
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh------------------hhcCCCceEEecCcch
Confidence 99999999998 88888888999999999999998877654410 0112222222222221
Q ss_pred CC----CChhHHHhhhcCCCce-EEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhh---cCCCcEEEccCC
Q 011674 152 TF----INEREAFLYIETSLLS-FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNT 223 (480)
Q Consensus 152 ~~----~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n 223 (480)
.. ..+ ....|.++..|+ .+.+.... . ....+... ..++..+.+.++
T Consensus 159 ~~~~~~~~i-~~~~f~~~~~L~~~i~~~~~~------------------------~-l~~~~~~~~~~~~~~~~l~~~~~ 212 (329)
T 3sb4_A 159 DAYRFKNRW-EHFAFIEGEPLETTIQVGAMG------------------------K-LEDEIMKAGLQPRDINFLTIEGK 212 (329)
T ss_dssp HHHHTSTTT-TTSCEEESCCCEEEEEECTTC------------------------C-HHHHHHHTTCCGGGCSEEEEEEC
T ss_pred hhhhccccc-cccccccccccceeEEecCCC------------------------c-HHHHHhhcccCccccceEEEeee
Confidence 00 000 001122333333 22222111 0 11111110 133444444432
Q ss_pred CCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCC-E
Q 011674 224 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE-R 302 (480)
Q Consensus 224 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~ 302 (480)
+.......+...+++|+.|++++|.++.+...+|..+++|+.+++.+| +...... +|.+|++|+ .
T Consensus 213 -l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~------------aF~~~~~L~~~ 278 (329)
T 3sb4_A 213 -LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR------------VFSNCGRLAGT 278 (329)
T ss_dssp -CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT------------TTTTCTTCCEE
T ss_pred -ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH------------HhhCChhccEE
Confidence 222233333233566666666666666666666666667777777665 4444444 677777777 7
Q ss_pred EeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEE
Q 011674 303 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 352 (480)
Q Consensus 303 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 352 (480)
+++.+ .++.+...+|.+|++|+.+++++|.+..+....|.++++|+.+.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77776 56666667777777777777777777776666777777777765
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.5e-17 Score=165.01 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=136.9
Q ss_pred CCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCC-CCCEEEcCCCc
Q 011674 51 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS-SLECLNLSNCT 129 (480)
Q Consensus 51 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~-~L~~L~l~~~~ 129 (480)
.+|+.|++++|.+++ +|..+ .++|++|++++|.++. +| ..+++|++|++++|.++.++.+. +|++|++++|.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCc
Confidence 378889998888877 34434 3688899998888885 34 45788888888888888877544 78888888888
Q ss_pred ccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHH
Q 011674 130 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 209 (480)
Q Consensus 130 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 209 (480)
++.+|. .+++|+.|++++|.+..++. .+++|++|++++|.++.++.+. ++|+.|++++|.++.... +.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~--~~ 199 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA--VP 199 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC--CC
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh--HH
Confidence 888777 57888888888888877654 4678888888888888776543 788888888888774332 21
Q ss_pred hhcCCC-------cEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhc
Q 011674 210 CVGANL-------RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 260 (480)
Q Consensus 210 ~~~~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 260 (480)
.+| +.|++++|.++.++...+ .+++|+.|++++|.+++..|..+..
T Consensus 200 ---~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 200 ---VRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -----------CCEEEECCSSCCCCCCGGGG--GSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ---HhhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 245 888888888876654332 3778888888888888777766654
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=2.8e-18 Score=163.36 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=179.8
Q ss_pred cEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHH-HHhhccCCCCCCE-EEc
Q 011674 5 KELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEY-LDL 82 (480)
Q Consensus 5 ~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-L~l 82 (480)
++++.+++ .++..+ ..+ .+++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+. .+.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~-~Lt~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777776 566443 223 36899999999999987777899999999999999998654 4467899998876 556
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEccccCCCCCCC-----CCCCCEEEcCC-CcccchhccCC-CC-CCccEEEccCCCCC
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-----ISSLECLNLSN-CTIDSILEGNE-NK-APLAKISLAGTTFI 154 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~-----~~~L~~L~l~~-~~l~~~~~~~~-~~-~~L~~L~l~~~~~~ 154 (480)
..|+++...+.+|..+++|++|++++|++..++. ..++..+++.+ +.+..++...+ .+ ..++.|++++|.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6789999889999999999999999999998763 34567788865 57888877654 33 56899999999999
Q ss_pred ChhHHHhhhcCCCceEEEccC-CccCcch--hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCC-CCCcchH
Q 011674 155 NEREAFLYIETSLLSFLDVSN-SSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGV 230 (480)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~-~~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~ 230 (480)
.++.... ...+++.+.+.+ |.++.++ .+..+++|++|++++|+++...... +.+|+.|.+.++ .+...+.
T Consensus 168 ~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS----CTTCCEEECTTCTTCCCCCC
T ss_pred CCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh----hccchHhhhccCCCcCcCCC
Confidence 8776543 457899999974 6788773 5789999999999999998765432 277888887665 4555443
Q ss_pred HHHhcCCCCCcEEEccCC
Q 011674 231 GILAGHLPNLEILSLSGT 248 (480)
Q Consensus 231 ~~~~~~l~~L~~L~l~~n 248 (480)
...+++|+.+++.++
T Consensus 242 ---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 ---LEKLVALMEASLTYP 256 (350)
T ss_dssp ---TTTCCSCCEEECSCH
T ss_pred ---chhCcChhhCcCCCC
Confidence 256899999999764
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=148.22 Aligned_cols=154 Identities=16% Similarity=0.219 Sum_probs=125.8
Q ss_pred CeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEcc
Q 011674 191 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 270 (480)
Q Consensus 191 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 270 (480)
+.+++++|.++.... ..+..+++|++++|.++...+...+..+++|+.|++++|.+++..+..|..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~~iP~----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCcc----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 466677766654321 1125677888888888877544334678899999999999988877788899999999999
Q ss_pred CccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCE
Q 011674 271 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 350 (480)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 350 (480)
+|.+++..+. .|.++++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|+.
T Consensus 90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 9999888776 6888999999999999999888888999999999999999999887788889999999
Q ss_pred EEecCCccCc
Q 011674 351 LSIRDAVLTN 360 (480)
Q Consensus 351 L~l~~n~i~~ 360 (480)
|++++|.+..
T Consensus 158 L~L~~N~l~c 167 (220)
T 2v70_A 158 LNLLANPFNC 167 (220)
T ss_dssp EECCSCCEEC
T ss_pred EEecCcCCcC
Confidence 9999998765
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.6e-17 Score=156.83 Aligned_cols=218 Identities=17% Similarity=0.164 Sum_probs=145.6
Q ss_pred CCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCC----CCChhHHHHHhhcC
Q 011674 140 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM----IGDDSVEMVACVGA 213 (480)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~~~~ 213 (480)
+.+|++|++.+ .+..++. .+|.+|++|+.+++++|.+..+ .+|..+.++..+...... ........+..+ .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~-~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG-E 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES-C
T ss_pred cCCCcEEECCc-cccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc-c
Confidence 45555555555 4443332 2344566666666666655444 344555555555444311 000001111122 4
Q ss_pred CCc-EEEccCCCCCcchHHHH--hcCCCCCcEEEccCCCCChHHHHHhh-cCCCccEEEccCccccccccccccchhhhh
Q 011674 214 NLR-NLNLSNTRFSSAGVGIL--AGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVL 289 (480)
Q Consensus 214 ~L~-~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 289 (480)
.|+ .+.+.... ......+ .-...++..+.+.++ +.......+. .+++|+.+++++|.++.....
T Consensus 177 ~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~--------- 244 (329)
T 3sb4_A 177 PLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDF--------- 244 (329)
T ss_dssp CCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---------
T ss_pred ccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHh---------
Confidence 455 44444322 1222111 113557788888775 3433333333 589999999999999887776
Q ss_pred cHHHhhcCCCCCEEeCCCCCccccccccccccccCc-eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCC
Q 011674 290 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 368 (480)
Q Consensus 290 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~ 368 (480)
+|.+|++|+++++.+| +..+...+|.+|++|+ .+++.+ .++.+....|.+|++|+.+++++|.++..+...|..
T Consensus 245 ---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 245 ---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp ---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred ---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 8999999999999998 8888889999999999 999998 788887889999999999999999999999999999
Q ss_pred CCCCcEEEc
Q 011674 369 PRSLKLLDL 377 (480)
Q Consensus 369 ~~~L~~l~l 377 (480)
|++|+.++.
T Consensus 320 ~~~L~~ly~ 328 (329)
T 3sb4_A 320 GVPSKLIYK 328 (329)
T ss_dssp TCCCCEEEC
T ss_pred Ccchhhhcc
Confidence 999999864
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=8.5e-17 Score=141.20 Aligned_cols=154 Identities=17% Similarity=0.201 Sum_probs=106.0
Q ss_pred cEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhh
Q 011674 216 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 295 (480)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (480)
+.++.+++.++..+. ...+++++|++++|.++...+..+..+++|++|++++|.+++..+. .|.
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~ 73 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VFN 73 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TTT
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hcC
Confidence 455555555555443 2245677777777777666555566777777777777777766554 466
Q ss_pred cCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEE
Q 011674 296 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 375 (480)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l 375 (480)
.+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|++|
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 77777777777777776666666777777777777777776655556777777777777777776666566667777788
Q ss_pred EcCCCcccCH
Q 011674 376 DLHGGWLLTE 385 (480)
Q Consensus 376 ~l~~n~~~~~ 385 (480)
++++|++.++
T Consensus 154 ~l~~N~~~~~ 163 (208)
T 2o6s_A 154 WLHDNPWDCT 163 (208)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCeecC
Confidence 8877776554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-17 Score=152.33 Aligned_cols=169 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred CCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEc
Q 011674 166 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 245 (480)
Q Consensus 166 ~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 245 (480)
.++..++++++.+..+..+..+++|++|++++|.++... .+..+ ++|+.|++++|.+++... +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEEEC
Confidence 344444555555555555555555555555555555432 23333 555555555555555443 234555555555
Q ss_pred cCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCc
Q 011674 246 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 325 (480)
Q Consensus 246 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 325 (480)
++|++++... +.. ++|+.|++++|.+++.. .+..+++|++|++++|++++. ..+..+++|+
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCCh--------------hhcCcccccEEECCCCcCCCC--hHHccCCCCC
Confidence 5555554321 122 45555555555555431 244555555555555555543 1345555555
Q ss_pred eeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcc
Q 011674 326 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 326 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
+|++++|.+++. ..+..+++|+.|++++|.++..
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 555555555544 3445555555555555555443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.4e-17 Score=140.62 Aligned_cols=153 Identities=23% Similarity=0.362 Sum_probs=91.7
Q ss_pred cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCcc
Q 011674 186 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 265 (480)
Q Consensus 186 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 265 (480)
.+++|++|++++|.+.... .+..+ ++|++|++++|.+.... . +..+++|++|++++|.+++..+..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3444555555555544322 23333 55555555555444432 1 23466777777777776665555666677777
Q ss_pred EEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCC-ccccccccccccccCceeecCCCCCChhhHHhhcC
Q 011674 266 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 344 (480)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 344 (480)
.|++++|.+++..+. .+..+++|++|++++|. +.+. + .+..+++|++|++++|.+++.. .+..
T Consensus 116 ~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~ 179 (197)
T 4ezg_A 116 LLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIED 179 (197)
T ss_dssp EEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGG
T ss_pred EEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--Hhcc
Confidence 777777777654444 56677777777777776 5553 2 4667777777777777776643 5667
Q ss_pred CCCCCEEEecCCccCc
Q 011674 345 LSKLTNLSIRDAVLTN 360 (480)
Q Consensus 345 l~~L~~L~l~~n~i~~ 360 (480)
+++|++|++++|++.+
T Consensus 180 l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEEECBC----
T ss_pred CCCCCEEEeeCcccCC
Confidence 7777777777777653
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=2.2e-17 Score=157.74 Aligned_cols=174 Identities=25% Similarity=0.286 Sum_probs=102.2
Q ss_pred cEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcch--hhc-cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEc
Q 011674 144 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 220 (480)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 220 (480)
+.++++++.+..+|..+ .+.++.|++++|.+..++ .+. .+++|++|++++|.+....+..+..+ ++|+.|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEEC
T ss_pred CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEEC
Confidence 46667777666655432 245667777777766662 233 56666777776666665555555555 66666666
Q ss_pred cCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHh---hcC
Q 011674 221 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL---QNL 297 (480)
Q Consensus 221 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~---~~~ 297 (480)
++|.++......+ ..+++|+.|+|++|.++...+..|..+++|+.|++++|.++..+.. .| ..+
T Consensus 96 s~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------~~~~~~~l 162 (361)
T 2xot_A 96 SSNHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE------------LIKDGNKL 162 (361)
T ss_dssp CSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG------------GTC----C
T ss_pred CCCcCCcCCHHHh-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH------------HhcCcccC
Confidence 6666665554443 3466666666666666655555566666666666666666655443 23 345
Q ss_pred CCCCEEeCCCCCcccccccccccccc--CceeecCCCCCC
Q 011674 298 NHLERLNLEQTQVSDATLFPLSTFKE--LIHLSLRNASLT 335 (480)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~ 335 (480)
++|+.|+|++|+++.+.+..+..++. ++.|+|++|.+.
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66666666666666555455555554 355666666553
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.3e-17 Score=147.77 Aligned_cols=170 Identities=24% Similarity=0.322 Sum_probs=145.8
Q ss_pred cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCcc
Q 011674 186 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 265 (480)
Q Consensus 186 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 265 (480)
.+.++..++++++.+++.. .+..+ ++|+.|++++|.++... .+ ..+++|+.|++++|++++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 4566788889999888755 45566 99999999999999876 23 579999999999999998766 88999999
Q ss_pred EEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCC
Q 011674 266 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 345 (480)
Q Consensus 266 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 345 (480)
.|++++|.+++.... .. ++|++|++++|.+++. ..+..+++|++|++++|++++.. .+..+
T Consensus 89 ~L~L~~N~l~~l~~~--------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l 149 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGI--------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFL 149 (263)
T ss_dssp EEECCSSCCSCCTTC--------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGC
T ss_pred EEECCCCccCCcCcc--------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccC
Confidence 999999999886432 33 8999999999999885 35889999999999999999873 68899
Q ss_pred CCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccC
Q 011674 346 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 384 (480)
Q Consensus 346 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~ 384 (480)
++|++|++++|.+++. ..+..+++|+.|++++|++.+
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 9999999999999886 667888999999999999744
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.6e-17 Score=144.69 Aligned_cols=153 Identities=15% Similarity=0.205 Sum_probs=125.4
Q ss_pred CeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEcc
Q 011674 191 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 270 (480)
Q Consensus 191 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 270 (480)
+.++++++.++.... ..+++++.|++++|.++......+ ..+++|+.|++++|+++...+..|..+++|+.|+++
T Consensus 14 ~~v~c~~~~l~~iP~----~l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT----NLPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCS----SCCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCC----ccCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 456666665554321 112578888888888887766555 568899999999999988878888899999999999
Q ss_pred CccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCE
Q 011674 271 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 350 (480)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 350 (480)
+|.++..++. .|.++++|++|+|++|.++...+..+..+++|++|+|++|.+++..+..+..+++|++
T Consensus 89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 9999887666 6788999999999999999988888999999999999999999887777888999999
Q ss_pred EEecCCccCc
Q 011674 351 LSIRDAVLTN 360 (480)
Q Consensus 351 L~l~~n~i~~ 360 (480)
|++++|.+..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 9999998754
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=2.3e-16 Score=140.43 Aligned_cols=127 Identities=27% Similarity=0.344 Sum_probs=64.5
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEc
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 106 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 106 (480)
++|++|++++|.+++..+..|.++++|++|+|++|.+....+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555544455555555555555555555444444555555555555555555544444555555555555
Q ss_pred cccCCCCCC----CCCCCCEEEcCCCcccchhcc-CCCCCCccEEEccCCCC
Q 011674 107 AWTGVTKLP----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTF 153 (480)
Q Consensus 107 ~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~ 153 (480)
++|.++.++ .+++|++|++++|.+..++.. +..+++|+.|++++|.+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 555554443 344455555555544444432 22444444444444443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3.1e-19 Score=179.72 Aligned_cols=187 Identities=17% Similarity=0.141 Sum_probs=94.6
Q ss_pred hCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCC-------------CCHHHHhhccCCCCCCEEE-ccCCcCCc
Q 011674 24 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-------------VTDLVLRSLQVLTKLEYLD-LWGSQVSN 89 (480)
Q Consensus 24 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~i~~ 89 (480)
..+++|+.|+|++|.++. +|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 346777777777777754 56777777777777775553 2233334444444444444 33222211
Q ss_pred hhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCce
Q 011674 90 RGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 169 (480)
Q Consensus 90 ~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (480)
|+.+.+..|.++.++. ..|+.|++++|.++.+|. +..+++|+.|++++|.+..+|.. +..+++|+
T Consensus 425 -----------L~~l~l~~n~i~~l~~-~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~ 489 (567)
T 1dce_A 425 -----------LRSKFLLENSVLKMEY-ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA--LAALRCLE 489 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHH-TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG--GGGCTTCC
T ss_pred -----------hhhhhhhcccccccCc-cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh--hhcCCCCC
Confidence 1111112222222221 235555555555555554 44555555555555555544432 23555555
Q ss_pred EEEccCCccCcchhhccCCCCCeeeCcCCCCCChh-HHHHHhhcCCCcEEEccCCCCCc
Q 011674 170 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSS 227 (480)
Q Consensus 170 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~ 227 (480)
.|++++|.+++++.+..+++|++|++++|.++... +..+..+ ++|+.|++++|.++.
T Consensus 490 ~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l-~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 490 VLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQ 547 (567)
T ss_dssp EEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGC-TTCCEEECTTSGGGG
T ss_pred EEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcC-CCCCEEEecCCcCCC
Confidence 55555555555555555555555555555555443 4444444 455555555554443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=6.5e-16 Score=133.52 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=115.1
Q ss_pred cEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc
Q 011674 241 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 320 (480)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 320 (480)
+.+++++++++.+.. .+ .++++.|++++|.+.+..+. ..|..+++|++|++++|.+++..+..+..
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSD-----------GLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCS-----------CSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCc-----------cccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 566777776654322 12 23788888888888776553 03778899999999999999888888999
Q ss_pred cccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhC
Q 011674 321 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 395 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 395 (480)
+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+++...++..+.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l 151 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence 999999999999999887777889999999999999999988888888999999999999999998888776554
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=132.22 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=115.8
Q ss_pred cEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccc
Q 011674 241 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 320 (480)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 320 (480)
+.++++++.++.+.. . -.++|+.|++++|.++..+ . .|.++++|++|+|++|.++...+..|..
T Consensus 13 ~~l~~~~~~l~~ip~-~--~~~~l~~L~L~~n~i~~ip-~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-G--IPRDVTELYLDGNQFTLVP-K------------ELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCS-C--CCTTCCEEECCSSCCCSCC-G------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcCCC-C--CCCCCCEEECCCCcCchhH-H------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 456677766664432 1 2357888888888887554 3 5888899999999999999888888999
Q ss_pred cccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 321 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 321 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
+++|++|+|++|.++...+..|..+++|++|++++|.++......+..+++|+.|++++|++.|++.+.|+..+..
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 9999999999999998877788999999999999999998777778889999999999999999999888876643
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=1e-15 Score=148.16 Aligned_cols=309 Identities=14% Similarity=0.177 Sum_probs=159.3
Q ss_pred CHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCC-----C
Q 011674 40 TADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----L 114 (480)
Q Consensus 40 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-----l 114 (480)
+.+...+|.++++|+++.+..+ ++.+...+|.+|++|+.+++..+ ++.....+|..+..|+.+.+..+ +.. .
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 3334445555555666655432 44444455556666666655432 44444455555555555444322 111 1
Q ss_pred CCCCCCCEEEcCCCcccchhcc-CCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcc--hhhccCCCCC
Q 011674 115 PNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 191 (480)
Q Consensus 115 ~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~ 191 (480)
..+. +....+.. .+..+... +..+.+|+.+.+.++- ..+. ...|.++.+|+.+.+..+ +..+ .++..+..|+
T Consensus 137 ~~~~-~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~-~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCD-FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLH-NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCC-CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEEC-TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eccc-ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceec-cccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 1111 11111111 11222222 2255666666665432 1111 123445666666666544 3322 4566666777
Q ss_pred eeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccC
Q 011674 192 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 271 (480)
Q Consensus 192 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 271 (480)
.+.+..+.... .. . +..+.+|+.+.+... +...+...+ ..+..++.+.+..+. ..+....|..+..++.+....
T Consensus 212 ~i~~~~~~~~i-~~-~-~~~~~~l~~i~ip~~-~~~i~~~~f-~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 212 NMEFPNSLYYL-GD-F-ALSKTGVKNIIIPDS-FTELGKSVF-YGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp BCCCCTTCCEE-CT-T-TTTTCCCCEEEECTT-CCEECSSTT-TTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECS
T ss_pred eeecCCCceEe-eh-h-hcccCCCceEEECCC-ceecccccc-cccccceeEEcCCCc-ceeeccccccccccceeccCc
Confidence 66665543221 11 1 111156777666542 233333333 346677777776543 223334456666676666655
Q ss_pred ccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEE
Q 011674 272 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 351 (480)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 351 (480)
..+... +|.++.+|+.+.+..+ +..+...+|.+|.+|+.+++..+ ++.+....|.+|.+|+.+
T Consensus 286 ~~i~~~---------------~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 286 VIVPEK---------------TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp SEECTT---------------TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred eeeccc---------------cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 443222 5666777777777653 55555666777777777777543 555555567777777777
Q ss_pred EecCCccCcccccCCCCCCCCcEEEcCCC
Q 011674 352 SIRDAVLTNSGLGSFKPPRSLKLLDLHGG 380 (480)
Q Consensus 352 ~l~~n~i~~~~~~~~~~~~~L~~l~l~~n 380 (480)
.+..+ ++..+..+|..|.+|+.+++..+
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 77655 55566666777777777776543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.3e-16 Score=131.13 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=104.8
Q ss_pred CCCCCcEEEcCCCcCC-HHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcE
Q 011674 25 SISTLEKLWLSETGLT-ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 103 (480)
Q Consensus 25 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 103 (480)
..++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578888888888887 44556667888888888888888776 67888888888888888888767777777888888
Q ss_pred EEccccCCCCCC------CCCCCCEEEcCCCcccchhc----cCCCCCCccEEEccCCCCCChh
Q 011674 104 LNLAWTGVTKLP------NISSLECLNLSNCTIDSILE----GNENKAPLAKISLAGTTFINER 157 (480)
Q Consensus 104 L~l~~n~l~~l~------~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~~~~~ 157 (480)
|++++|.+++++ .+++|++|++++|.+..++. .+..+++|+.|++++|.+...+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 888888877653 57888899999988888776 5668889999999888876554
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=9.6e-15 Score=124.47 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=109.3
Q ss_pred CcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccccccc
Q 011674 240 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 319 (480)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 319 (480)
.+.+++++++++.... ...++|+.|++++|.+++..+. .+..+++|++|++++|.++...+..+.
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence 4566666666654431 2235778888888887766555 577888899999999988887777788
Q ss_pred ccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHH-HHHHHHh
Q 011674 320 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKM 394 (480)
Q Consensus 320 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~ 394 (480)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..+++|++|++++|++.+++. +.++..+
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 88999999999999888776677889999999999999988777667788999999999999988776 5555443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=6.4e-17 Score=162.88 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=61.2
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccc
Q 011674 239 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 318 (480)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 318 (480)
.|+.|++++|.+++.. . ++.+++|+.|++++|.++.. |. .++.+++|++|+|++|.++++ | .+
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~------------~~~~l~~L~~L~Ls~N~l~~l-p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PP------------ALAALRCLEVLQASDNALENV-D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CG------------GGGGCTTCCEEECCSSCCCCC-G-GG
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-ch------------hhhcCCCCCEEECCCCCCCCC-c-cc
Confidence 4556666666665532 2 55566666666666666533 22 355666666666666666553 3 55
Q ss_pred cccccCceeecCCCCCChhh-HHhhcCCCCCCEEEecCCccCcc
Q 011674 319 STFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS 361 (480)
Q Consensus 319 ~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~ 361 (480)
..+++|+.|+|++|.+++.. +..+..+++|+.|++++|.+++.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55666666666666665554 55566666666666666666554
No 126
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=142.07 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=113.5
Q ss_pred CCCCCeeeCcCCCCCChhHHHHHhhc----CCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhh---
Q 011674 187 MKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS--- 259 (480)
Q Consensus 187 ~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--- 259 (480)
.+.|++|++++|.++......++... ++|++|+|++|.+++.+...+...+++|++|++++|.+++.....++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 34566666666666665555554431 46677777777776666555555556677777777777665544442
Q ss_pred --cCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc----cccccccccCceeecCCCC
Q 011674 260 --MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNAS 333 (480)
Q Consensus 260 --~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~ 333 (480)
..++|++|++++|.++..... .....+..+++|++|+|++|.+++.. ...+..+++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA--------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH--------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHH--------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 356677777777776542111 11224566777888888888776543 3344556778888888888
Q ss_pred CChhhHH----hhcCCCCCCEEEecCCccCcccccCCCCC---C--CCcEEE--cCCCcc
Q 011674 334 LTDVSLH----QLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL 382 (480)
Q Consensus 334 l~~~~~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~~---~--~L~~l~--l~~n~~ 382 (480)
+++.... .+..+++|++|++++|.|++.+...+... . .++.+. +..+.+
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 8765433 34456788888888888877655443322 2 266666 666664
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.4e-14 Score=137.86 Aligned_cols=260 Identities=11% Similarity=0.116 Sum_probs=150.8
Q ss_pred CCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCC-----CCCCCCCCEEE
Q 011674 50 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLN 124 (480)
Q Consensus 50 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 124 (480)
+..++.+.+... ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+.. +.+|.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 455555555432 444444555554 5666666544 555555555553 456555553 2222 22455555555
Q ss_pred cCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChh
Q 011674 125 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 204 (480)
Q Consensus 125 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 204 (480)
+.+|.+..++...+.+..|+.+.+..+ +..+.. .+|..|++|+.+++..+ ++...
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-----------------------~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGS-----------------------QAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECT-----------------------TTTTTCTTCCCEECCTT-CCEEC
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-hheehh-----------------------hHhhCCCCCCEEecCCC-ccCcc
Confidence 555555555555544445555544422 221111 34455555555555543 33333
Q ss_pred HHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCC-----hHHHHHhhcCCCccEEEccCcccccccc
Q 011674 205 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID-----DYAISYMSMMPSLKFIDISNTDIKGFIQ 279 (480)
Q Consensus 205 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 279 (480)
..+|.. .+|+.+.+. +.++.++...| ..|++|+.+.+.++.+. .+...+|..|++|+.+++.. .+.....
T Consensus 242 ~~aF~~--~~L~~i~lp-~~i~~I~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~ 316 (401)
T 4fdw_A 242 QEAFRE--SGITTVKLP-NGVTNIASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ 316 (401)
T ss_dssp TTTTTT--CCCSEEEEE-TTCCEECTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred cccccc--CCccEEEeC-CCccEEChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh
Confidence 333333 466666663 34555555555 45777777777766543 34556677888888888873 4555444
Q ss_pred ccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCC-CCCEEEecCCcc
Q 011674 280 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-KLTNLSIRDAVL 358 (480)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i 358 (480)
. +|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+.......|.+++ +++.|.+..+.+
T Consensus 317 ~------------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 317 G------------LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T------------TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred h------------hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 6888888888888654 666667778888 888888888877666555666664 678888877654
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.2e-14 Score=140.05 Aligned_cols=260 Identities=12% Similarity=0.138 Sum_probs=136.8
Q ss_pred CcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEcc
Q 011674 4 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 83 (480)
Q Consensus 4 L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 83 (480)
++.+.|.+. ++.....+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.+|++|+.+++.
T Consensus 115 l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 115 YNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp CSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred ccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344444442 344444444443 4555554433 433333444443 355555543 3333333445555555555555
Q ss_pred CCcCCchhhHhhcCCCCCcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChhHHHhh
Q 011674 84 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLY 162 (480)
Q Consensus 84 ~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~ 162 (480)
+|.++.....+|. +.+|+.+.+..+ +..++...+ .+.+|+.+.+..+ +..+.. .+|
T Consensus 189 ~n~l~~I~~~aF~--------------------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~-~aF 245 (401)
T 4fdw_A 189 KTKITKLPASTFV--------------------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ-EAF 245 (401)
T ss_dssp TSCCSEECTTTTT--------------------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT-TTT
T ss_pred CCcceEechhhEe--------------------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc-ccc
Confidence 4444444444443 344455555422 444444444 4555555555442 222222 122
Q ss_pred hcCCCceEEEccCCccCcc--hhhccCCCCCeeeCcCCCCC-----ChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhc
Q 011674 163 IETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIG-----DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 235 (480)
Q Consensus 163 ~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 235 (480)
.+ .+|+.+.+. +.+..+ .+|..|++|+.+++.++.+. ......|..+ ++|+.+.+.+ .+..++...| .
T Consensus 246 ~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-~~L~~l~l~~-~i~~I~~~aF-~ 320 (401)
T 4fdw_A 246 RE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-PKLARFEIPE-SIRILGQGLL-G 320 (401)
T ss_dssp TT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-TTCCEECCCT-TCCEECTTTT-T
T ss_pred cc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-ccCCeEEeCC-ceEEEhhhhh-c
Confidence 23 456666663 333333 45666666666666665443 2333444444 6777777773 4666666555 4
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCC-CCCEEeCCCCCcc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVS 311 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~n~l~ 311 (480)
.|.+|+.+.+..+ ++.+...+|..+ +|+.+++.+|.+...... .|.+++ +++.|.+..+.+.
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~------------~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK------------VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS------------SCCCSCTTCCEEEECGGGHH
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc------------cccCCCCCccEEEeCHHHHH
Confidence 5778888888554 666666677777 888888888776665544 566663 6778888776554
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=4.3e-15 Score=125.51 Aligned_cols=133 Identities=28% Similarity=0.342 Sum_probs=77.2
Q ss_pred CCCcEEEccCCCCCc-chHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcH
Q 011674 213 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL 291 (480)
Q Consensus 213 ~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 291 (480)
++|++|++++|.+++ ..+.. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 89 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM----------- 89 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence 455666666665551 11111 23456666666666666554 4455666666666666666654443
Q ss_pred HHhhcCCCCCEEeCCCCCcccccc-ccccccccCceeecCCCCCChhhH---HhhcCCCCCCEEEecCCccCc
Q 011674 292 TALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 292 ~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~i~~ 360 (480)
.+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 90 -~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 90 -LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp -HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred -HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 45556666666666666665422 455666666666666666655433 355666666666666666544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=2.4e-15 Score=124.30 Aligned_cols=85 Identities=28% Similarity=0.376 Sum_probs=39.8
Q ss_pred hhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChh-hHHhhcCCCCCCEEEecCCccCcccc---cCCCCC
Q 011674 294 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPP 369 (480)
Q Consensus 294 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~~ 369 (480)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++... ..+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 44444555555555554443344444445555555555555443 12344455555555555555544332 233344
Q ss_pred CCCcEEEcC
Q 011674 370 RSLKLLDLH 378 (480)
Q Consensus 370 ~~L~~l~l~ 378 (480)
++|++|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 555555443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6.5e-15 Score=121.68 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=81.0
Q ss_pred CCCCcEEEcCCCcCC-HHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEE
Q 011674 26 ISTLEKLWLSETGLT-ADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL 104 (480)
Q Consensus 26 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 104 (480)
.++|++|++++|.++ +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456667777776666 33445556667777777777766655 556666777777777777666556666666777777
Q ss_pred EccccCCCCC------CCCCCCCEEEcCCCcccchhc----cCCCCCCccEEEcc
Q 011674 105 NLAWTGVTKL------PNISSLECLNLSNCTIDSILE----GNENKAPLAKISLA 149 (480)
Q Consensus 105 ~l~~n~l~~l------~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~ 149 (480)
++++|.++++ ..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777766653 256777777777777776665 44577788887765
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.6e-15 Score=155.91 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC----CCC
Q 011674 43 GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NIS 118 (480)
Q Consensus 43 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~~~ 118 (480)
.+..|..+++|++|+|++|.+.. ++..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++.+| .++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 45667788888888888888774 3445557888888888888887 45667788888888888888887765 567
Q ss_pred CCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCC
Q 011674 119 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 198 (480)
Q Consensus 119 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n 198 (480)
+|++|+|++|.+..+|..+..+++|+.|+|++|.+.+.++............+++++|.+.+. ....|+.|+++.|
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~----~p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP----LPHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCC---------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc----CccccceeEeecc
Confidence 888888888888888888778888888888888887665543321111222355666665442 2234556666655
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=1.7e-14 Score=124.58 Aligned_cols=129 Identities=13% Similarity=0.237 Sum_probs=82.0
Q ss_pred cEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHH-HhhcCCCccEEEccCccccccccccccchhhhhcHHHh
Q 011674 216 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 294 (480)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (480)
+.++++++.++..+.. ...++++|++++|.++...+. .+..+++|+.|++++|.+++..+. .|
T Consensus 11 ~~l~~s~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------AF 74 (192)
T ss_dssp TEEECTTSCCSSCCSC----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------TT
T ss_pred CEEEcCCCCcCcCccC----CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------Hc
Confidence 4555666555544431 123666666666666654442 356666677777777776666555 56
Q ss_pred hcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 295 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 295 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666777777777777766666666667777777777777766666666667777777777776653
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=1.9e-14 Score=139.10 Aligned_cols=331 Identities=12% Similarity=0.141 Sum_probs=237.6
Q ss_pred CChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHh
Q 011674 15 VTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 94 (480)
Q Consensus 15 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 94 (480)
++..+..+|.++.+|+++.+.. .++.+...+|.+|++|+.+++..+ ++.....+|.+|.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445667889999999999974 577777788999999999999765 56666678999999999887654 56666777
Q ss_pred hcCCCCCcEEEccccC---CCCCCCCCCCCEEEcCCCcccchhccCC-CCCCccEEEccCCCCCChhHHHhhhcCCCceE
Q 011674 95 LKMFPRLSFLNLAWTG---VTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSF 170 (480)
Q Consensus 95 l~~l~~L~~L~l~~n~---l~~l~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 170 (480)
|..+..+......... -..+.++.+|+.+.+..+ +..++...+ .+.+|+.+.+..+ +..+. ...|.++..|+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~-~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR-DYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC-TTTTTTCTTCCB
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC-chhhccccccce
Confidence 8777554443333221 123557899999999765 455666655 8899999998765 33222 245668889998
Q ss_pred EEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCC
Q 011674 171 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 250 (480)
Q Consensus 171 L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 250 (480)
+.+..+....-.....+..|+.+.+... ++......+..+ ..++.+.+..+. .......+ ..+..++.+......+
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~-~~i~~~~F-~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNK-LRIGGSLF-YNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTT-CEECSCTT-TTCTTCCEEEECSSEE
T ss_pred eecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCc-ceeecccc-ccccccceeccCceee
Confidence 8887665433344455678888888654 333333344444 889999987753 33333344 4688899888776544
Q ss_pred ChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecC
Q 011674 251 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 330 (480)
Q Consensus 251 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 330 (480)
.. ..|..+.+|+.+.+..+ ++..... +|.+|.+|+.+++..+ ++.+...+|.+|.+|+.+.+.
T Consensus 289 ~~---~~F~~~~~L~~i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 289 PE---KTFYGCSSLTEVKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CT---TTTTTCTTCCEEEECTT-CCEECTT------------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cc---ccccccccccccccccc-cceechh------------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 32 45778999999999754 4444333 7999999999999764 777778899999999999998
Q ss_pred CCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEE
Q 011674 331 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL 375 (480)
Q Consensus 331 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l 375 (480)
.+ +..+....|.+|++|+.+++..+- ... ...|..|++|+.+
T Consensus 352 ~~-l~~I~~~aF~~C~~L~~i~lp~~~-~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 352 LS-LRKIGANAFQGCINLKKVELPKRL-EQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TT-CCEECTTTBTTCTTCCEEEEEGGG-GGG-GGGBCTTCEEEEE
T ss_pred cc-ccEehHHHhhCCCCCCEEEECCCC-EEh-hheecCCCCCcEE
Confidence 77 777777789999999999998752 222 3467888888765
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=5.7e-14 Score=119.66 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=89.7
Q ss_pred CcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHh
Q 011674 215 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 294 (480)
Q Consensus 215 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (480)
.+.++++++.++..+. ...++|++|++++|++++..+..+..+++|+.|++++|.+++..+. .+
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------VF 72 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------Hc
Confidence 4566666666665543 1245677777777777666555566777777777777777766554 46
Q ss_pred hcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 295 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 295 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 677777777777777777666666777777777777777776655556677777777777777654
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=8.4e-15 Score=152.10 Aligned_cols=172 Identities=9% Similarity=0.060 Sum_probs=77.2
Q ss_pred hhcCCCCCcEEEccccCCCCCC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCce
Q 011674 94 VLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 169 (480)
Q Consensus 94 ~l~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (480)
.+..++.|+.|+|++|.+..++ .+++|++|+|++|.+..+|..+..+++|+.|+|++|.+..+|.. +.++++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--GGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--hcCCCCCC
Confidence 3444444444444444444333 34555555555555555565555666666666666666655443 23566677
Q ss_pred EEEccCCccCcc-hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCC
Q 011674 170 FLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 248 (480)
Q Consensus 170 ~L~l~~~~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 248 (480)
+|+|++|.++.+ ..+..+++|++|++++|.+....+..+.........+++++|.++... +..|..|+++.|
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-------p~~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-------PHERRFIEINTD 369 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCC---------
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-------ccccceeEeecc
Confidence 777777766665 346677777777777777777666665443112223556666665432 334555555554
Q ss_pred --------CCChHHHHHhhcCCCccEEEccCccc
Q 011674 249 --------QIDDYAISYMSMMPSLKFIDISNTDI 274 (480)
Q Consensus 249 --------~l~~~~~~~~~~~~~L~~L~l~~~~l 274 (480)
.+....+..+..+..+....++.|-+
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp --------------------------------CC
T ss_pred cccccccCCccccccchhhcccccceeeeecccc
Confidence 22222222333444444555555554
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=7.4e-14 Score=120.50 Aligned_cols=128 Identities=24% Similarity=0.251 Sum_probs=99.1
Q ss_pred cEEEccCCCCCcchHHHHhcCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhh
Q 011674 216 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 295 (480)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (480)
+.++++++.++..+.. ..+++++|++++|.++... ..|..+++|+.|++++|.+++..+. .|.
T Consensus 13 ~~l~~~~~~l~~ip~~----~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~------------~f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG----IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQ------------SFS 75 (193)
T ss_dssp TEEECTTSCCSSCCSC----CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTT------------TTT
T ss_pred CEEEcCCCCCCcCCCC----CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHh------------Hcc
Confidence 4667777776665432 2457888888888877543 5677888888888888888877665 678
Q ss_pred cCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCc
Q 011674 296 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 360 (480)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 360 (480)
++++|++|+|++|+++...+..+..+++|++|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888888888888888777788888888888888888887766667888888888888887753
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=7.9e-14 Score=132.96 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=127.3
Q ss_pred CCCceEEEccCCccCcc--h----hhc-cCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHh---
Q 011674 165 TSLLSFLDVSNSSLSRF--C----FLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--- 234 (480)
Q Consensus 165 ~~~L~~L~l~~~~l~~~--~----~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--- 234 (480)
.+.|+.|++++|.++.. . .+. ..++|++|++++|.+++.....++...++|++|+|++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777776654 1 222 2368888888888887766666665447888888888888877666553
Q ss_pred -cCCCCCcEEEccCCCCChHHHHH----hhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCC
Q 011674 235 -GHLPNLEILSLSGTQIDDYAISY----MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 309 (480)
Q Consensus 235 -~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 309 (480)
...++|++|++++|.+++..... +..+++|++|++++|.+++... ......+..+++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--------~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--------ELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--------HHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--------HHHHHHHhcCCCcCeEECCCCC
Confidence 23578999999999887644333 4578889999999998765321 1122356778899999999999
Q ss_pred cccccccc----ccccccCceeecCCCCCChhhHHhhcCCCC-----CCEEE--ecCCccCc
Q 011674 310 VSDATLFP----LSTFKELIHLSLRNASLTDVSLHQLSSLSK-----LTNLS--IRDAVLTN 360 (480)
Q Consensus 310 l~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-----L~~L~--l~~n~i~~ 360 (480)
+++..... +..+++|++|+|++|.+++.+...+..... |+.+. +.++.+..
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 88754333 345688999999999998877666644322 55665 55555543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.7e-14 Score=122.82 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=87.6
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhc-CCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 314 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 314 (480)
.+++|+.|++++|.++.. + .+.. .++|+.|++++|.+++. . .+..+++|++|++++|.+++..
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~------------~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--D------------GFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--C------------CCCCCSSCCEEECCSSCCCEEC
T ss_pred CcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--c------------ccccCCCCCEEECCCCcccccC
Confidence 356677777777766643 2 2333 33777777777777654 2 3667777777888877777655
Q ss_pred cccccccccCceeecCCCCCChhhH-HhhcCCCCCCEEEecCCccCccccc---CCCCCCCCcEEEcCCCcc
Q 011674 315 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLDLHGGWL 382 (480)
Q Consensus 315 ~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~l~l~~n~~ 382 (480)
+..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.++..... .+..+++|+.||+++|..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555777778888888887766432 3567778888888888877654322 255668888888888864
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.3e-14 Score=118.82 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=52.0
Q ss_pred CCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc-cc
Q 011674 239 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FP 317 (480)
Q Consensus 239 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~ 317 (480)
+|+.|++++|.+++. ..+..+++|+.|++++|.+++.++. .+..+++|++|++++|.+..... ..
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~ 108 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------LDQALPDLTELILTNNSLVELGDLDP 108 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------HHHHCTTCCEEECCSCCCCCGGGGGG
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------hhhcCCCCCEEECCCCcCCcchhhHh
Confidence 444444444444443 2344455555555555555544333 34555555555555555544321 14
Q ss_pred ccccccCceeecCCCCCChhhHH---hhcCCCCCCEEEecCCcc
Q 011674 318 LSTFKELIHLSLRNASLTDVSLH---QLSSLSKLTNLSIRDAVL 358 (480)
Q Consensus 318 ~~~~~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i 358 (480)
+..+++|++|++++|.+...... .+..+++|+.|++++|.+
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 44555555555555555433211 245556666666655544
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=8.1e-13 Score=127.69 Aligned_cols=324 Identities=11% Similarity=0.134 Sum_probs=160.2
Q ss_pred HHhhhCCC-CCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCC---CCHHHHhhccCCCCCCEEEccCCcCCchhhHhh
Q 011674 20 MKHLLSIS-TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP---VTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 95 (480)
Q Consensus 20 ~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 95 (480)
..+|.+++ .|+++.+.. .++.+...+|.+|++|+.+.+..+. ++.....+|..|.+|+.+.+..+ ++.....+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34455553 466666643 2555455566666666666665432 44444455666666666555432 344445555
Q ss_pred cCCCCCcEEEccccCCC----CCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEE
Q 011674 96 KMFPRLSFLNLAWTGVT----KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 171 (480)
Q Consensus 96 ~~l~~L~~L~l~~n~l~----~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (480)
..+.+|+.+.+..+-.. ....+.+|+.+.+..+ +..+....+....|+.+.+...-... ....|..+..+...
T Consensus 134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i--~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRI--GTNAFSECFALSTI 210 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEE--CTTTTTTCTTCCEE
T ss_pred hhhcccccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccccc--ccchhhhcccccee
Confidence 56666666665432110 1224455555555432 34444444444455555554332110 01123344444444
Q ss_pred EccCCccCcch--hhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEccCCC
Q 011674 172 DVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 249 (480)
Q Consensus 172 ~l~~~~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 249 (480)
........... .+............. ... ..+..+.+.+ .+...+...| ..+..|+.+.+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~ip~-~v~~i~~~aF-~~c~~L~~i~lp~~- 275 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQ-REDPAFKIPN-GVARIETHAF-DSCAYLASVKMPDS- 275 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTT-CCCSEEECCT-TEEEECTTTT-TTCSSCCEEECCTT-
T ss_pred cccccccccccceeeccccccccccccc-----------ccc-cccceEEcCC-cceEccccee-eecccccEEecccc-
Confidence 43333221110 000000000000000 000 2233333332 2233333333 45777777777654
Q ss_pred CChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeec
Q 011674 250 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 329 (480)
Q Consensus 250 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 329 (480)
+..+...+|..+++|+.+.+. +.++..... +|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus 276 ~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~------------aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 276 VVSIGTGAFMNCPALQDIEFS-SRITELPES------------VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECC-TTCCEECTT------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cceecCcccccccccccccCC-CcccccCce------------eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 233444566777788887775 334433333 6778888888888754 66666677788888888888
Q ss_pred CCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCc
Q 011674 330 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 381 (480)
Q Consensus 330 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~ 381 (480)
..+ ++.+....|.+|++|+.+++.++... ...+..+..|+.+.+..+.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 654 55555667788888888888776532 2345566777777766553
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=9.6e-13 Score=111.00 Aligned_cols=114 Identities=22% Similarity=0.213 Sum_probs=97.6
Q ss_pred ccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhc
Q 011674 264 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 343 (480)
Q Consensus 264 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 343 (480)
.+.+++++|.++..+.. + .++|++|+|++|.+++..+..+..+++|++|+|++|+++...+..+.
T Consensus 11 ~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 57888888888876543 2 37899999999999998888899999999999999999988777788
Q ss_pred CCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHH-HHHHH
Q 011674 344 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFC 392 (480)
Q Consensus 344 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~ 392 (480)
.+++|++|++++|++++..+..+..+++|++|++++|++.+++. +.++.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence 99999999999999998877778889999999999999988764 44443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.7e-12 Score=109.87 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=93.1
Q ss_pred ccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCceeecCCCCCChhhHHhhc
Q 011674 264 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 343 (480)
Q Consensus 264 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 343 (480)
-+.++++++.++..+.. + .++|++|+|++|.+.+..+..+..+++|++|+|++|++++..+..+.
T Consensus 14 ~~~l~~~~n~l~~iP~~-------------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-------------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCccCCC-------------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 36788888888766443 2 27899999999999998888899999999999999999987766678
Q ss_pred CCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHH
Q 011674 344 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 387 (480)
Q Consensus 344 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 387 (480)
.+++|++|++++|.+++.....+..+++|++|++++|++.+++.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 89999999999999998777778889999999999999987764
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=1.1e-14 Score=126.47 Aligned_cols=125 Identities=24% Similarity=0.265 Sum_probs=75.2
Q ss_pred cCCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccc
Q 011674 235 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 314 (480)
Q Consensus 235 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 314 (480)
..+++|++|++++|.+++.. .+..+++|+.|++++|.++..+ . .+..+++|++|++++|.+++.
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~------------~~~~~~~L~~L~L~~N~l~~l- 108 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-N------------LDAVADTLEELWISYNQIASL- 108 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-S------------HHHHHHHCSEEEEEEEECCCH-
T ss_pred hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-c------------hhhcCCcCCEEECcCCcCCcC-
Confidence 34666666666666665532 5556666777777766666432 2 344556677777777766653
Q ss_pred cccccccccCceeecCCCCCChhhH-HhhcCCCCCCEEEecCCccCcccccC----------CCCCCCCcEEE
Q 011674 315 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGS----------FKPPRSLKLLD 376 (480)
Q Consensus 315 ~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~----------~~~~~~L~~l~ 376 (480)
+ .+..+++|++|++++|.+++... ..+..+++|++|++++|.+.+..+.. +..+++|+.||
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2 45666677777777776665432 45666777777777777665543321 34456666655
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=8.2e-15 Score=127.33 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=46.8
Q ss_pred hccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCCC----CCCCCEEEcCCCcccchhccCCCCCCccE
Q 011674 70 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN----ISSLECLNLSNCTIDSILEGNENKAPLAK 145 (480)
Q Consensus 70 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~~----~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 145 (480)
.|..+++|++|++++|.+++ .+ .+..+++|++|++++|.++.++. +++|++|++++|.+..+| .+..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 44555555555555555544 22 44444555555555544444331 234444444444444433 2333444444
Q ss_pred EEccCCCCCChhHHHhhhcCCCceEEEccCCcc
Q 011674 146 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 178 (480)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 178 (480)
|++++|.+..++....+..+++|++|++++|.+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 444444444433322223344444444444443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=3.4e-12 Score=123.28 Aligned_cols=319 Identities=15% Similarity=0.209 Sum_probs=197.3
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCC---cCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCE
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET---GLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY 79 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 79 (480)
.|+.+.|... ++..+..+|.+|++|+.+.+..+ .++.+...+|.++.+|+.+.+..+ ++.....+|..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 4888999874 78888899999999999999765 366666788999999999888654 55555678999999999
Q ss_pred EEccCCcCCchhhHhhcCCCCCcEEEccccCCCCCC----CCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCC
Q 011674 80 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 155 (480)
Q Consensus 80 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 155 (480)
+.+..+ +......+|..+..|+.+.+..+ ++.++ ...+|+.+.+..+-..--...+..+..+............
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 999753 55566778899999999999754 33332 2457888887765333333334477888888776654432
Q ss_pred hhHHHhhhcCCCceEEEccCCccCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhc
Q 011674 156 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 235 (480)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 235 (480)
....+ +........... .+.....+..+.+... +......+|..+ ..|+.+.+.++ +...+...+ .
T Consensus 220 ~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c-~~L~~i~lp~~-~~~I~~~aF-~ 285 (394)
T 4gt6_A 220 IDNVL-YEKSANGDYALI---------RYPSQREDPAFKIPNG-VARIETHAFDSC-AYLASVKMPDS-VVSIGTGAF-M 285 (394)
T ss_dssp SSSCE-EEECTTSCEEEE---------ECCTTCCCSEEECCTT-EEEECTTTTTTC-SSCCEEECCTT-CCEECTTTT-T
T ss_pred cccee-eccccccccccc---------ccccccccceEEcCCc-ceEcccceeeec-ccccEEecccc-cceecCccc-c
Confidence 22111 111111111000 1111122222222211 111122223333 56666666543 223333343 4
Q ss_pred CCCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCcccccc
Q 011674 236 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 315 (480)
Q Consensus 236 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (480)
.++.|+.+.+.. .++.+...+|..|.+|+.+.+..+ ++..... +|.+|.+|+.+.+..+ ++.+..
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~------------aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDD------------AFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTT------------TTTTCTTCCEEEECTT-CCBCCG
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHh------------HhhCCCCCCEEEECcc-cCEEhH
Confidence 577888888763 455555667788888888888653 4433333 7888999999988754 777777
Q ss_pred ccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCcc
Q 011674 316 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 358 (480)
Q Consensus 316 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 358 (480)
.+|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 88889999999998887422 24567788888888776543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.9e-12 Score=109.20 Aligned_cols=85 Identities=22% Similarity=0.222 Sum_probs=40.4
Q ss_pred CCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEc
Q 011674 27 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 106 (480)
Q Consensus 27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 106 (480)
++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44455555555554444444444555555555555444444444444455555555555444444444444444444444
Q ss_pred cccCC
Q 011674 107 AWTGV 111 (480)
Q Consensus 107 ~~n~l 111 (480)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 44433
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=3.4e-12 Score=107.98 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=58.1
Q ss_pred cEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEcccc
Q 011674 30 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 109 (480)
Q Consensus 30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n 109 (480)
+.++++++.++.. |..+ .++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4556665555442 2222 255666666666666555555666666666666666666555555556666666666666
Q ss_pred CCCCCC-----CCCCCCEEEcCCCcccchh
Q 011674 110 GVTKLP-----NISSLECLNLSNCTIDSIL 134 (480)
Q Consensus 110 ~l~~l~-----~~~~L~~L~l~~~~l~~~~ 134 (480)
.++.++ .+++|++|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 655443 3556666666666655433
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=2.1e-10 Score=110.10 Aligned_cols=303 Identities=13% Similarity=0.143 Sum_probs=145.2
Q ss_pred HhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCC
Q 011674 21 KHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 100 (480)
Q Consensus 21 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 100 (480)
+++....+|+.+.+.. .++.+...+|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+.+.. .+......+|... +
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-D 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-C
Confidence 3444556666666653 455545556666666666666533 444444566665 455555543 2444444445443 4
Q ss_pred CcEEEccccCCCCCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChhHHHhhhcCCCceEEEccCCccCc
Q 011674 101 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 180 (480)
Q Consensus 101 L~~L~l~~n~l~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 180 (480)
|+.+.+..+ +..+....+....++.+.+..+ +..+. ...|..+..++.+.+..+....
T Consensus 115 L~~i~lp~~--------------------~~~i~~~~F~~~~l~~~~~~~~-v~~i~-~~~f~~~~~l~~~~~~~~~~~~ 172 (379)
T 4h09_A 115 LDDFEFPGA--------------------TTEIGNYIFYNSSVKRIVIPKS-VTTIK-DGIGYKAENLEKIEVSSNNKNY 172 (379)
T ss_dssp CSEEECCTT--------------------CCEECTTTTTTCCCCEEEECTT-CCEEC-SCTTTTCTTCCEEEECTTCSSE
T ss_pred cccccCCCc--------------------cccccccccccceeeeeeccce-eeccc-cchhccccccccccccccccee
Confidence 555555432 1222222222223333333221 11000 0122234444444443322111
Q ss_pred c--------------hhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcCCCCCcEEEcc
Q 011674 181 F--------------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 246 (480)
Q Consensus 181 ~--------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 246 (480)
. ..+..+..+..+.+.... .......+... .+++.+.+..+ +...+...+ ..+..|+.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp 248 (379)
T 4h09_A 173 VAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYG-KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIP 248 (379)
T ss_dssp EEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTC-SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEEC
T ss_pred ecccceecccccceeccccccccccccccccce-eEEeecccccc-cccceeeeccc-eeEEccccc-cCCccceEEEcC
Confidence 1 122233344444433321 11111112222 55666655432 333333333 346666666665
Q ss_pred CCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccccccccccCce
Q 011674 247 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 326 (480)
Q Consensus 247 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 326 (480)
.+ ++.+...+|..+.+|+.+.+..+ +...... +|.+|.+|+.+.+.++.+..+...+|.+|.+|+.
T Consensus 249 ~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 249 KN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred CC-ccEeCccccceeehhcccccccc-ceecccc------------ccccccccccccccccccceehhhhhcCCCCCCE
Confidence 54 44444455666666666666432 3322222 5666677777777666666666666666777777
Q ss_pred eecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCC
Q 011674 327 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 370 (480)
Q Consensus 327 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 370 (480)
+.|..+ ++.+...+|.+|.+|+.+.+..+ ++..+..+|.+|.
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 776543 44454556666677776666543 4444555555543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=2.4e-10 Score=109.71 Aligned_cols=305 Identities=13% Similarity=0.119 Sum_probs=182.9
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCcCCHHHHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCCCCCEEEc
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 82 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 82 (480)
+|+.+.|... ++..+..+|.+|.+|+.++|.. .++.+...+|.++ +|+.+.+..+ +......+|..+ +|+.+.+
T Consensus 47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GCSEEEECTT--EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 5778888763 7777888999999999999975 4777677888887 5888888654 444455677765 7999999
Q ss_pred cCCcCCchhhHhhcCCCCCcEEEccccCCC-----CCCCCCCCCEEEcCCCcccchhccCCCCCCccEEEccCCCCCChh
Q 011674 83 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 157 (480)
Q Consensus 83 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~l~-----~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 157 (480)
..+ +......+|.++ .|+.+.+..+ ++ ....+.+++...+......................
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 187 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL---------- 187 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE----------
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee----------
Confidence 764 444555566554 4555555432 12 12345666666655443221111100000000000
Q ss_pred HHHhhhcCCCceEEEccCCc-cCcchhhccCCCCCeeeCcCCCCCChhHHHHHhhcCCCcEEEccCCCCCcchHHHHhcC
Q 011674 158 EAFLYIETSLLSFLDVSNSS-LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 236 (480)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 236 (480)
..+..+..+..+.+.... ......+..+..|+.+.+..+ +.......+..+ ..|+.+.+..+ ++.++...+ ..
T Consensus 188 --~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF-~~ 261 (379)
T 4h09_A 188 --ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLL-QN 261 (379)
T ss_dssp --EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTT-TT
T ss_pred --ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCcccc-ce
Confidence 001122333333332221 111134455566666666543 232233333333 66777777654 555555444 45
Q ss_pred CCCCcEEEccCCCCChHHHHHhhcCCCccEEEccCccccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCccccccc
Q 011674 237 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 316 (480)
Q Consensus 237 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 316 (480)
+.+|+.+.+..+ +..+...+|..+++|+.+.+.++.++..... +|.+|.+|+.+.|..+ ++.+...
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~------------aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR------------VFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT------------TTTTCTTCCEEECCTT-CCEECTT
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhh------------hhcCCCCCCEEEcCcc-ccEEHHH
Confidence 778888877653 5555556677888888888887776655554 7888888888888754 6666777
Q ss_pred cccccccCceeecCCCCCChhhHHhhcCCCC
Q 011674 317 PLSTFKELIHLSLRNASLTDVSLHQLSSLSK 347 (480)
Q Consensus 317 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 347 (480)
+|.+|.+|+.+.+..+ ++.+....|.++..
T Consensus 328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 328 AFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred HhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 8888888888888654 55555556666643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=9.9e-11 Score=111.01 Aligned_cols=100 Identities=20% Similarity=0.206 Sum_probs=80.4
Q ss_pred hhcCCCCCEEeCCC-CCccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCC
Q 011674 294 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 372 (480)
Q Consensus 294 ~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 372 (480)
+..+++|++|+|++ |.+..+.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 45667788888885 888887777788888888888888888887777788888888888888888877666665555 9
Q ss_pred cEEEcCCCcccCHHHHHHHHHh
Q 011674 373 KLLDLHGGWLLTEDAILQFCKM 394 (480)
Q Consensus 373 ~~l~l~~n~~~~~~~~~~~~~~ 394 (480)
+.|++.+|++.|++.+.++..+
T Consensus 106 ~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 106 QELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp CEEECCSSCCCCCGGGHHHHHH
T ss_pred eEEEeeCCCccCCCccHHHHHH
Confidence 9999999999888887777654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.09 E-value=8.2e-11 Score=97.65 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=92.2
Q ss_pred CCCCEEeCCCCCccccccccccccccCceeecCCC-CCChhhHHhhcCC----CCCCEEEecCCc-cCcccccCCCCCCC
Q 011674 298 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSL----SKLTNLSIRDAV-LTNSGLGSFKPPRS 371 (480)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l----~~L~~L~l~~n~-i~~~~~~~~~~~~~ 371 (480)
..|++|++++|.+++.....+..+++|++|+|++| .+++.....+..+ ++|++|++++|. +++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47899999999999888888889999999999999 6899888888775 589999999985 99999888889999
Q ss_pred CcEEEcCCCcccCHHH--HHHHHHhCCceeeee
Q 011674 372 LKLLDLHGGWLLTEDA--ILQFCKMHPRIEVWH 402 (480)
Q Consensus 372 L~~l~l~~n~~~~~~~--~~~~~~~~~~l~~~~ 402 (480)
|++|++++|+.+++.+ ...+.+..|.+++..
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 9999999999888875 567788999888763
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=1.8e-10 Score=109.20 Aligned_cols=99 Identities=27% Similarity=0.297 Sum_probs=65.6
Q ss_pred EEEcCCC-cCCHHHHHHHcCCCCCCEEEcCC-CCCCHHHHhhccCCCCCCEEEccCCcCCchhhHhhcCCCCCcEEEccc
Q 011674 31 KLWLSET-GLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 108 (480)
Q Consensus 31 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 108 (480)
.++++++ .++. +|. |..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..+.+|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566665 5665 344 66677777777764 667666666677777777777777777776666677777777777777
Q ss_pred cCCCCCC----CCCCCCEEEcCCCccc
Q 011674 109 TGVTKLP----NISSLECLNLSNCTID 131 (480)
Q Consensus 109 n~l~~l~----~~~~L~~L~l~~~~l~ 131 (480)
|.++.++ ....|++|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 7776655 1123777777777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=2.5e-09 Score=101.04 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=81.0
Q ss_pred CCCccEEEccCCCCCChhH-HHhhhcCCCceEEEccCC--c------cCcc-hhh--ccCCCCCeeeCcCCCCCChhHHH
Q 011674 140 KAPLAKISLAGTTFINERE-AFLYIETSLLSFLDVSNS--S------LSRF-CFL--TQMKALEHLDLSSSMIGDDSVEM 207 (480)
Q Consensus 140 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~--~------l~~~-~~~--~~~~~L~~L~l~~n~l~~~~~~~ 207 (480)
.++|++|.+..+.+..... .+....+++|+.|+|+.+ . +..+ +.+ ..+|+|+.|++.+|.+.+.....
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 4455555555554432211 111224566666666421 1 1111 112 24788888888888887655555
Q ss_pred HHh--hcCCCcEEEccCCCCCcchHHHHh---cCCCCCcEEEccCCCCChHHHHHhhc-CCCccEEEccCcc
Q 011674 208 VAC--VGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDISNTD 273 (480)
Q Consensus 208 ~~~--~~~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~~~ 273 (480)
++. ..++|++|+|+.|.+++.+...+. ..+++|+.|+++.|.+++.....+.. + ...++++.+.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 553 227888999988888887655543 24678999999988888776666664 3 4567887776
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.1e-09 Score=103.39 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=37.7
Q ss_pred cCCCCCEEeCCCCCcccccc----ccccccccCceeecCCCCCChhhHHhhcC-CCCCCEEEecCCc
Q 011674 296 NLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLRNASLTDVSLHQLSS-LSKLTNLSIRDAV 357 (480)
Q Consensus 296 ~~~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 357 (480)
.+++|++|+|+.|.+.+... ..+..+++|+.|+|++|.+++.....+.. + ...+++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 35677777777777766432 22345677888888777777665555543 3 3557777765
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.91 E-value=2.4e-09 Score=88.82 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=77.0
Q ss_pred CCcEEecCCCCCCChhhHHhhhCCCCCcEEEcCCCc-CCHHHHHHHcCC----CCCCEEEcCCCC-CCHHHHhhccCCCC
Q 011674 3 CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG-LTADGIALLSSL----QNLSVLDLGGLP-VTDLVLRSLQVLTK 76 (480)
Q Consensus 3 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~L~~~~-~~~~~~~~~~~l~~ 76 (480)
+|++|||++| .+++.+...+.++++|++|+|++|. +++.....++.+ ++|++|+|++|. +++.....++++++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4788999998 4888888888899999999999884 888877778775 479999999884 88887788888899
Q ss_pred CCEEEccCCc-CCchhh--Hhh-cCCCCCc
Q 011674 77 LEYLDLWGSQ-VSNRGA--AVL-KMFPRLS 102 (480)
Q Consensus 77 L~~L~l~~~~-i~~~~~--~~l-~~l~~L~ 102 (480)
|++|++++|. +++... ..+ ..+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 9999998874 665332 122 4566655
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=8.3e-09 Score=87.92 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=85.4
Q ss_pred HHhhhCCCCCcEEEcCCC-cCCHHHH----HHHcCCCCCCEEEcCCCCCCHHH----HhhccCCCCCCEEEccCCcCCch
Q 011674 20 MKHLLSISTLEKLWLSET-GLTADGI----ALLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVSNR 90 (480)
Q Consensus 20 ~~~l~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~~ 90 (480)
...+...+.|++|+|++| .+.+... ..+...++|++|+|++|.+.+.. ...+...++|++|+|++|.|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445667889999999998 8877543 34456788999999999888754 34455668899999999998876
Q ss_pred h----hHhhcCCCCCcEEEc--cccCCCC---------CCCCCCCCEEEcCCCccc
Q 011674 91 G----AAVLKMFPRLSFLNL--AWTGVTK---------LPNISSLECLNLSNCTID 131 (480)
Q Consensus 91 ~----~~~l~~l~~L~~L~l--~~n~l~~---------l~~~~~L~~L~l~~~~l~ 131 (480)
+ ..++...+.|++|++ ++|.+.. +...+.|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5 344566778999999 7888874 335678999999999876
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.7e-08 Score=84.70 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=31.4
Q ss_pred hccCCCCCeeeCcCC-CCCChhHHHHHhhc---CCCcEEEccCCCCCcchHHHHh---cCCCCCcEEEccCCCCCh
Q 011674 184 LTQMKALEHLDLSSS-MIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDD 252 (480)
Q Consensus 184 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~ 252 (480)
+...+.|++|++++| .+.+.+...++... ++|++|+|++|.+++.+...+. ...++|++|+|++|.+++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344455555555555 55544444433321 3455555555555444332221 122445555555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=3.1e-07 Score=82.20 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=20.7
Q ss_pred CCCCCCEEEcCCCCCCH--HHHhhccCCCCCCEEEccCCcCCc
Q 011674 49 SLQNLSVLDLGGLPVTD--LVLRSLQVLTKLEYLDLWGSQVSN 89 (480)
Q Consensus 49 ~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~ 89 (480)
++++|++|+|++|.+++ ..+..+..+++|+.|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 45555555555555544 222334455555555555555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.4e-06 Score=77.95 Aligned_cols=82 Identities=29% Similarity=0.303 Sum_probs=65.2
Q ss_pred hCCCCCcEEEcCCCcCCHH--HHHHHcCCCCCCEEEcCCCCCCHHHHhhccCCC--CCCEEEccCCcCCchhh-------
Q 011674 24 LSISTLEKLWLSETGLTAD--GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT--KLEYLDLWGSQVSNRGA------- 92 (480)
Q Consensus 24 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~~~~------- 92 (480)
.++++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+. ..+..+. +|++|++++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4689999999999999883 346777999999999999999876 3344444 99999999999886332
Q ss_pred HhhcCCCCCcEEEcc
Q 011674 93 AVLKMFPRLSFLNLA 107 (480)
Q Consensus 93 ~~l~~l~~L~~L~l~ 107 (480)
..+..+|+|+.||-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 346788888888644
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.12 E-value=1.6e-05 Score=67.14 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=72.1
Q ss_pred hhCCCCCcEEEcCCC-cCCHHHH----HHHcCCCCCCEEEcCCCCCCHHHHhhc----cCCCCCCEEEccCCcCCchhhH
Q 011674 23 LLSISTLEKLWLSET-GLTADGI----ALLSSLQNLSVLDLGGLPVTDLVLRSL----QVLTKLEYLDLWGSQVSNRGAA 93 (480)
Q Consensus 23 l~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~----~~l~~L~~L~l~~~~i~~~~~~ 93 (480)
+.+-+.|++|+|+++ .+.+... .++..-+.|+.|+|++|.+.+....++ ...+.|++|+|++|.|.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345677888888875 7766433 344566778888888888876644444 4567888888888888776555
Q ss_pred hh----cCCCCCcEEEccccCC---CC---------CCCCCCCCEEEcCCCccc
Q 011674 94 VL----KMFPRLSFLNLAWTGV---TK---------LPNISSLECLNLSNCTID 131 (480)
Q Consensus 94 ~l----~~l~~L~~L~l~~n~l---~~---------l~~~~~L~~L~l~~~~l~ 131 (480)
++ ..-..|++|+|+++.. .. +..-+.|++|+++.+.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 43 3345688888875432 21 224567888888776543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.05 E-value=1.6e-05 Score=67.11 Aligned_cols=116 Identities=12% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCCCCeeeCcCC-CCCChhHHHHHhhc---CCCcEEEccCCCCCcchHHHHh---cCCCCCcEEEccCCCCChHHHHHhh
Q 011674 187 MKALEHLDLSSS-MIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMS 259 (480)
Q Consensus 187 ~~~L~~L~l~~n-~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~ 259 (480)
-+.|++|+++++ .+.+.+...++... ..|+.|+|++|.+.+.+...+. ..-+.|++|+|+.|.|++.....++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 45444443333322 4455555555555544433222 1224555555555555544333322
Q ss_pred ----cCCCccEEEccCcc---ccccccccccchhhhhcHHHhhcCCCCCEEeCCCCCc
Q 011674 260 ----MMPSLKFIDISNTD---IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 310 (480)
Q Consensus 260 ----~~~~L~~L~l~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 310 (480)
..+.|++|+++++. +... +.......+..-++|++|+++.+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~--------g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQ--------VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHH--------HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHH--------HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33446666665432 1111 1111223455556666666665544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.46 E-value=0.00016 Score=56.99 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=53.7
Q ss_pred ceeecCCCCCC--hhhHHhhcCCCCCCEEEecCCccCcccccCCCCCCCCcEEEcCCCcccCHHHHHHHHHhCC
Q 011674 325 IHLSLRNASLT--DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 396 (480)
Q Consensus 325 ~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~ 396 (480)
..++.++++++ .+ |.. --++|++|+|++|+|+......|..+++|+.|+|.+|++.|++.+.||..+..
T Consensus 11 ~~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp TEEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred CEEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 36677777766 43 222 12468999999999988877788888999999999999999999998877653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.63 E-value=0.022 Score=44.52 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=19.6
Q ss_pred CCCEEeCCCCCccccccccccccccCceeecCCCCC
Q 011674 299 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 334 (480)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 334 (480)
+|++|+|++|+|+.+....|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555555555555555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.77 E-value=4.9 Score=29.29 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=22.7
Q ss_pred ccccccccccccccCceeecCCCCCChhhHHhhcCCCCCCEEEecC
Q 011674 310 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 355 (480)
Q Consensus 310 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 355 (480)
++.+...+|.+|.+|+.+.+..+ ++.+....|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455555555555555443 2333334455555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.97 E-value=3.4 Score=30.15 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=31.3
Q ss_pred HhhcCCCCCEEeCCCCCccccccccccccccCceeecCCC
Q 011674 293 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 332 (480)
Q Consensus 293 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 332 (480)
+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 7888888888888874 66677778888888888888665
Done!