BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011675
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QAX|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAX|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Hmg-Coa And Nad+
pdb|1QAY|A Chain A, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1QAY|B Chain B, Ternary Complex Of Pseudomonas Mevalonii Hmg-Coa Reductase
With Mevalonate And Nad+
pdb|1R31|A Chain A, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R31|B Chain B, Hmg-Coa Reductase From Pseudomonas Mevalonii Complexed
With Hmg-Coa
pdb|1R7I|A Chain A, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1R7I|B Chain B, Hmg-Coa Reductase From P. Mevalonii, Native Structure At
2.2 Angstroms Resolution.
pdb|1T02|A Chain A, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
pdb|1T02|B Chain B, Crystal Structure Of A Statin Bound To Class Ii Hmg-Coa
Reductase
Length = 428
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 170 VTGDSFRSVVYVHLGDDPFKLVKDAMRVVRSHLGTFKLLDEKTPPPIVDKFGWCTWDAFY 229
+TG R + +L D +L + +R+ L T + E I+D + + D +
Sbjct: 204 ITGGQVRLRILSNLAD--LRLARAQVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYR 261
Query: 230 LTVQPHGVMEGVKGLV 245
G+M G+ L+
Sbjct: 262 AATHNKGIMNGIDPLI 277
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 85 VPIGKLKNIRFMSIF-RFKVWWTTHW--------VGSNGRDLENETQLVILDNSTDTGRP 135
P G K +R M + RFK+ T VG+ R ++E L + G P
Sbjct: 156 APEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERG-QSEAIARNLREMSRLGVP 214
Query: 136 YVLLLPIVEGPFRASLQPGADDYVDVCVESGSTKVTGDSFRSVVYVHLGDDPFKLVKDAM 195
V + I EG +L G D V++ S + ++ + S+++ P L +AM
Sbjct: 215 VVCTV-IGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAP--LAAEAM 271
Query: 196 RVVRSHLGTFKLLDEKTPPPI 216
++R L KL+D P P+
Sbjct: 272 GIIRPRLKELKLIDSIIPEPL 292
>pdb|3N29|A Chain A, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
pdb|3N29|B Chain B, Crystal Structure Of Carboxynorspermidine Decarboxylase
Complexed With Norspermidine From Campylobacter Jejuni
Length = 418
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 104 WWTTHWVGSNGRDLENETQLVILDNSTDTGRPYVLLLPIVEGPFRAS-LQPGADDYVDVC 162
W T + V S +ENE Q+ ILD S++ P +++P A L ++ +
Sbjct: 276 WQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDL 335
Query: 163 VE-------SGSTKVTGDSFRSVVY---VHLGDDPFKLVKDAMRVVRS------HLGTFK 206
E +G+T + GD + + +GD L + +V++ L
Sbjct: 336 KENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLM 395
Query: 207 LLDEKTPPPIVDKFGW 222
LLD K ++ +F +
Sbjct: 396 LLDHKNELQMIREFSY 411
>pdb|2AP3|A Chain A, 1.6 A Crystal Structure Of A Conserved Protein Of Unknown
Function From Staphylococcus Aureus
Length = 199
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 392 DQMYEGLHSHLEKVGIDGVKVDVIHLLEILCENYGGRVDLAKAYYKALTAS 442
+Q ++ SH++ + D + +V L ++L E Y D AKAY KA+ +
Sbjct: 93 EQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSE 143
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 216 IVDKFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPP---GLVLIDDGWQ 261
I + GW TW+ + V +++ K + G V+IDD WQ
Sbjct: 7 ITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQ 55
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 219 KFGWCTWDAFYLTVQPHGVMEGVKGLVDGGCPP---GLVLIDDGWQSISHD 266
+ GW +W+ FY + + E LV+ G V IDD W S D
Sbjct: 10 QMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 233 QPHGVMEGVKGLVDGGCPPGLVLID-DGWQSISHDEDPIDSEGINRTAAGEQMPCRLLRY 291
+P+ +M G GL+ G L ID + W ++ E G NR+ A E + +
Sbjct: 425 KPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEI-----GTNRSVASEDLGTIAYYF 479
Query: 292 QEN 294
Q+N
Sbjct: 480 QKN 482
>pdb|1YLP|A Chain A, Atomic Resolution Structure Of Ctx-M-27 Beta-Lactamase
Length = 263
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 268 DPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKT 327
+PI + +N T ++ L+Y +N ++ GG G+ AF R + DE
Sbjct: 81 NPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPG----GVTAFARAIGDETFR 136
Query: 328 VDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTM 370
+D+ L IPG P TT + +LT+
Sbjct: 137 LDRTEPT---------LNTAIPGDPRDTTTPRAMAQTLRQLTL 170
>pdb|2P74|A Chain A, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
pdb|2P74|B Chain B, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
pdb|3G2Y|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
pdb|3G2Y|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
pdb|4DDS|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
pdb|4DDS|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
pdb|4DDY|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 10
pdb|4DDY|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 10
pdb|4DE0|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 16
pdb|4DE0|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 16
pdb|4DE1|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 18
pdb|4DE1|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 18
pdb|4DE2|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
pdb|4DE2|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
pdb|4DE3|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
pdb|4DE3|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
Length = 263
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 268 DPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKT 327
+PI + +N T ++ L+Y +N ++ GG G+ AF R + DE
Sbjct: 81 NPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPG----GVTAFARAIGDETFR 136
Query: 328 VDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTM 370
+D+ L IPG P TT + +LT+
Sbjct: 137 LDRTEP---------TLNTAIPGDPRDTTTPRAMAQTLRQLTL 170
>pdb|1YLT|A Chain A, Atomic Resolution Structure Of Ctx-M-14 Beta-Lactamase
pdb|1YLZ|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
pdb|1YLZ|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
Length = 263
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 268 DPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKT 327
+PI + +N T ++ L+Y +N ++ GG G+ AF R + DE
Sbjct: 81 NPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPG----GVTAFARAIGDETFR 136
Query: 328 VDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTM 370
+D+ L IPG P TT + +LT+
Sbjct: 137 LDRTEP---------TLNTAIPGDPRDTTTPRAMAQTLRQLTL 170
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 356 TVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEK----------- 404
++KPK+ G E+ + ++++VN+ VG + L D+M+ L + K
Sbjct: 393 ALLKPKVKVGTEMVTKGQNMNQVVNS-VGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYY 451
Query: 405 ---VGIDGVKVDVIHLLEILCENY 425
+ I G ++ + E LC NY
Sbjct: 452 IGVLDIAGFEIFDFNSFEQLCINY 475
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 356 TVVKPKLSPGLELTMEDLAVDKIVNNGVGFVPPELVDQMYEGLHSHLEK----------- 404
++KPK+ G E+ + ++++VN+ VG + L D+M+ L + K
Sbjct: 392 ALLKPKVKVGTEMVTKGQNMNQVVNS-VGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYY 450
Query: 405 ---VGIDGVKVDVIHLLEILCENY 425
+ I G ++ + E LC NY
Sbjct: 451 IGVLDIAGFEIFDFNSFEQLCINY 474
>pdb|3HUO|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Benzylpenicillin
pdb|3HUO|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Benzylpenicillin
pdb|3HVF|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Hydrolyzed Benzylpenicillin
pdb|3HVF|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex With Hydrolyzed Benzylpenicillin
pdb|3HLW|A Chain A, Ctx-M-9 S70g In Complex With Cefotaxime
pdb|3HLW|B Chain B, Ctx-M-9 S70g In Complex With Cefotaxime
pdb|3HRE|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
pdb|3HRE|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
pdb|3Q07|A Chain A, Ctx-M-9 S70g In Complex With Piperacillin
pdb|3Q07|B Chain B, Ctx-M-9 S70g In Complex With Piperacillin
pdb|3Q1F|A Chain A, Ctx-M-9 S70g In Complex With Hydrolyzed Piperacillin
pdb|3Q1F|B Chain B, Ctx-M-9 S70g In Complex With Hydrolyzed Piperacillin
Length = 263
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 268 DPIDSEGINRTAAGEQMPCRLLRYQENFKFRDYVSPNGGDSSDNKGMGAFIRDLKDEFKT 327
+PI + +N T ++ L+Y +N ++ GG G+ AF R + DE
Sbjct: 81 NPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPG----GVTAFARAIGDETFR 136
Query: 328 VDQVYVWHALCGYWGGLRPNIPGLPEKTTVVKPKLSPGLELTM 370
+D+ L IPG P TT + +LT+
Sbjct: 137 LDRTEPT---------LNTAIPGDPRDTTTPRAMAQTLRQLTL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,785,559
Number of Sequences: 62578
Number of extensions: 741575
Number of successful extensions: 1785
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 19
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)