Query 011677
Match_columns 479
No_of_seqs 179 out of 1511
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2670 Enolase [Carbohydrate 100.0 2E-117 5E-122 845.7 34.9 423 47-478 3-433 (433)
2 PLN00191 enolase 100.0 4E-108 8E-113 853.6 46.3 450 20-478 1-455 (457)
3 COG0148 Eno Enolase [Carbohydr 100.0 5E-106 1E-110 792.4 40.8 410 44-475 1-419 (423)
4 PTZ00081 enolase; Provisional 100.0 3E-104 6E-109 821.8 45.2 424 44-474 1-439 (439)
5 PTZ00378 hypothetical protein; 100.0 4E-102 8E-107 798.2 46.2 442 2-472 5-486 (518)
6 PRK00077 eno enolase; Provisio 100.0 2.9E-94 6.2E-99 751.0 43.5 413 44-477 1-423 (425)
7 cd03313 enolase Enolase: Enola 100.0 6.4E-93 1.4E-97 737.3 41.1 399 49-463 1-408 (408)
8 TIGR01060 eno phosphopyruvate 100.0 3.9E-92 8.4E-97 735.0 41.6 414 47-477 1-424 (425)
9 PRK08350 hypothetical protein; 100.0 6.8E-81 1.5E-85 610.9 34.6 330 44-470 1-336 (341)
10 PF00113 Enolase_C: Enolase, C 100.0 2.7E-77 5.9E-82 588.6 23.8 287 185-478 2-295 (295)
11 TIGR01502 B_methylAsp_ase meth 100.0 2.6E-40 5.7E-45 340.8 31.0 328 62-465 50-406 (408)
12 cd03314 MAL Methylaspartate am 100.0 3.6E-39 7.7E-44 329.1 30.7 324 62-460 13-365 (369)
13 cd03327 MR_like_2 Mandelate ra 100.0 4.1E-40 8.8E-45 336.1 23.4 291 46-436 1-293 (341)
14 PRK15072 bifunctional D-altron 100.0 1.2E-39 2.6E-44 339.5 27.1 308 45-435 1-334 (404)
15 cd03321 mandelate_racemase Man 100.0 1.8E-38 3.8E-43 325.9 30.3 294 45-436 1-308 (355)
16 cd03328 MR_like_3 Mandelate ra 100.0 4.2E-39 9E-44 329.8 24.5 290 46-436 1-306 (352)
17 cd03322 rpsA The starvation se 100.0 1.4E-38 2.9E-43 327.2 25.0 286 46-435 1-291 (361)
18 PRK14017 galactonate dehydrata 100.0 2.8E-38 6E-43 327.4 25.4 302 45-436 1-304 (382)
19 cd03325 D-galactonate_dehydrat 100.0 3.6E-38 7.8E-43 323.1 24.5 296 46-436 1-303 (352)
20 cd03318 MLE Muconate Lactonizi 100.0 6E-38 1.3E-42 323.2 25.0 284 61-436 28-316 (365)
21 TIGR02534 mucon_cyclo muconate 100.0 1.2E-37 2.7E-42 321.2 25.7 284 61-436 27-315 (368)
22 cd03317 NAAAR N-acylamino acid 100.0 8.1E-38 1.8E-42 321.0 23.8 287 61-445 24-312 (354)
23 TIGR01928 menC_lowGC/arch o-su 100.0 2E-37 4.3E-42 314.1 23.0 285 61-445 21-307 (324)
24 cd03326 MR_like_1 Mandelate ra 100.0 3.4E-37 7.3E-42 318.4 24.0 284 61-436 26-334 (385)
25 COG4948 L-alanine-DL-glutamate 100.0 3.7E-37 8E-42 318.1 23.1 281 62-435 30-313 (372)
26 PRK15440 L-rhamnonate dehydrat 100.0 4.5E-37 9.8E-42 317.8 23.4 272 62-437 57-333 (394)
27 cd03316 MR_like Mandelate race 100.0 5.1E-37 1.1E-41 315.5 22.9 306 46-436 1-316 (357)
28 cd03329 MR_like_4 Mandelate ra 100.0 1.7E-36 3.8E-41 312.6 24.7 279 61-436 32-312 (368)
29 cd03324 rTSbeta_L-fuconate_deh 100.0 4E-36 8.7E-41 312.7 24.3 288 46-419 2-352 (415)
30 TIGR03247 glucar-dehydr glucar 100.0 2.5E-35 5.4E-40 308.5 23.5 311 44-436 3-355 (441)
31 cd03323 D-glucarate_dehydratas 100.0 3.6E-35 7.7E-40 304.6 24.2 304 46-435 1-337 (395)
32 cd03319 L-Ala-DL-Glu_epimerase 100.0 5.3E-34 1.2E-38 288.4 23.6 275 62-435 26-304 (316)
33 PF03952 Enolase_N: Enolase, N 100.0 4.5E-34 9.7E-39 250.1 14.9 131 46-176 1-132 (132)
34 PRK15129 L-Ala-D/L-Glu epimera 100.0 2.8E-31 6E-36 268.9 19.7 261 61-433 27-289 (321)
35 cd03315 MLE_like Muconate lact 100.0 2.6E-30 5.6E-35 255.1 18.9 208 153-435 45-256 (265)
36 cd00308 enolase_like Enolase-s 100.0 5.7E-30 1.2E-34 247.4 19.5 175 153-436 44-222 (229)
37 cd03320 OSBS o-Succinylbenzoat 100.0 8.3E-29 1.8E-33 244.2 14.9 203 152-437 48-254 (263)
38 TIGR01927 menC_gamma/gm+ o-suc 100.0 5.2E-28 1.1E-32 243.3 19.2 257 61-437 21-284 (307)
39 PLN02980 2-oxoglutarate decarb 99.9 2.3E-26 5E-31 274.0 24.7 299 44-435 930-1265(1655)
40 PRK02714 O-succinylbenzoate sy 99.9 8.1E-26 1.7E-30 228.8 19.5 257 61-437 28-292 (320)
41 PRK05105 O-succinylbenzoate sy 99.9 1.8E-25 4E-30 226.3 15.7 251 61-436 27-284 (322)
42 PRK02901 O-succinylbenzoate sy 99.7 3.2E-17 7E-22 165.8 13.7 136 260-436 118-258 (327)
43 PF02746 MR_MLE_N: Mandelate r 99.6 3.3E-14 7.1E-19 123.0 12.5 92 61-177 26-117 (117)
44 COG3799 Mal Methylaspartate am 99.5 7E-13 1.5E-17 127.1 20.1 295 107-464 87-406 (410)
45 PF07476 MAAL_C: Methylasparta 99.5 3.6E-13 7.9E-18 124.9 15.4 181 260-464 47-246 (248)
46 PF01188 MR_MLE: Mandelate rac 99.0 1.7E-09 3.8E-14 84.0 7.1 64 266-359 2-67 (67)
47 PF13378 MR_MLE_C: Enolase C-t 98.8 7.5E-09 1.6E-13 88.5 5.6 69 359-436 1-71 (111)
48 COG1441 MenC O-succinylbenzoat 97.8 0.00027 5.7E-09 66.7 11.9 130 263-432 144-279 (321)
49 PF02197 RIIa: Regulatory subu 97.7 3.2E-05 7E-10 52.9 3.1 33 10-42 1-33 (38)
50 PF05186 Dpy-30: Dpy-30 motif; 97.6 9.3E-05 2E-09 51.7 4.0 38 4-42 3-40 (42)
51 PF05034 MAAL_N: Methylasparta 97.2 0.0026 5.5E-08 56.6 9.8 103 63-178 52-155 (159)
52 cd02932 OYE_YqiM_FMN Old yello 97.2 0.0055 1.2E-07 62.7 13.7 68 312-381 237-317 (336)
53 smart00394 RIIa RIIalpha, Regu 97.0 0.00082 1.8E-08 45.9 3.4 33 10-42 1-33 (38)
54 cd04733 OYE_like_2_FMN Old yel 96.6 0.0055 1.2E-07 62.8 7.5 68 312-381 232-319 (338)
55 cd02803 OYE_like_FMN_family Ol 95.8 0.18 3.9E-06 51.2 13.7 68 312-381 224-308 (327)
56 cd02930 DCR_FMN 2,4-dienoyl-Co 95.3 0.043 9.3E-07 56.6 7.0 68 312-381 220-303 (353)
57 PRK00366 ispG 4-hydroxy-3-meth 95.0 0.16 3.4E-06 51.7 9.7 76 343-427 69-146 (360)
58 TIGR00612 ispG_gcpE 1-hydroxy- 94.4 0.24 5.2E-06 50.0 9.2 74 344-426 62-136 (346)
59 COG0821 gcpE 1-hydroxy-2-methy 92.1 0.37 8.1E-06 48.4 6.5 74 342-424 62-136 (361)
60 cd02801 DUS_like_FMN Dihydrour 92.0 0.6 1.3E-05 44.7 7.8 63 317-381 139-210 (231)
61 TIGR01182 eda Entner-Doudoroff 87.7 2.2 4.8E-05 40.5 7.7 106 314-441 18-126 (204)
62 PRK13397 3-deoxy-7-phosphohept 87.4 11 0.00023 37.0 12.3 92 317-419 66-158 (250)
63 PF04551 GcpE: GcpE protein; 85.8 0.86 1.9E-05 46.5 3.9 73 344-426 59-146 (359)
64 TIGR02660 nifV_homocitr homoci 85.5 9 0.0002 39.7 11.5 130 311-444 18-163 (365)
65 cd07940 DRE_TIM_IPMS 2-isoprop 85.3 13 0.00028 36.7 12.0 126 312-446 16-166 (268)
66 PTZ00314 inosine-5'-monophosph 84.6 5.1 0.00011 43.3 9.4 133 319-475 243-394 (495)
67 PRK13398 3-deoxy-7-phosphohept 84.5 8 0.00017 38.3 10.1 93 316-419 77-170 (266)
68 cd07941 DRE_TIM_LeuA3 Desulfob 83.7 19 0.00041 35.7 12.5 132 311-444 15-172 (273)
69 TIGR01361 DAHP_synth_Bsub phos 83.5 6 0.00013 39.0 8.7 93 316-419 75-168 (260)
70 PRK06015 keto-hydroxyglutarate 83.5 4.9 0.00011 38.0 7.7 106 314-441 14-122 (201)
71 PRK08673 3-deoxy-7-phosphohept 83.4 7.8 0.00017 39.7 9.7 93 316-419 143-236 (335)
72 PRK13396 3-deoxy-7-phosphohept 83.1 14 0.00031 38.0 11.5 93 316-419 151-244 (352)
73 PRK05718 keto-hydroxyglutarate 82.7 5.3 0.00012 38.2 7.7 107 314-442 25-134 (212)
74 cd07939 DRE_TIM_NifV Streptomy 82.7 21 0.00046 34.9 12.3 134 311-448 15-164 (259)
75 KOG4109 Histone H3 (Lys4) meth 81.7 1.7 3.7E-05 36.9 3.4 39 4-43 67-105 (116)
76 PRK05096 guanosine 5'-monophos 81.2 3.9 8.4E-05 41.7 6.4 94 347-448 143-247 (346)
77 TIGR02090 LEU1_arch isopropylm 78.8 23 0.0005 36.7 11.5 130 311-444 17-162 (363)
78 cd07943 DRE_TIM_HOA 4-hydroxy- 78.4 45 0.00097 32.7 13.0 126 311-446 17-164 (263)
79 PRK00694 4-hydroxy-3-methylbut 78.3 5.1 0.00011 43.5 6.5 65 354-428 89-175 (606)
80 PRK07114 keto-hydroxyglutarate 77.8 11 0.00023 36.4 8.0 91 314-420 25-121 (222)
81 cd00956 Transaldolase_FSA Tran 77.1 14 0.0003 35.2 8.6 117 314-444 62-186 (211)
82 PRK11858 aksA trans-homoaconit 75.6 28 0.00061 36.3 11.1 127 311-441 21-163 (378)
83 PRK12595 bifunctional 3-deoxy- 74.5 45 0.00098 34.5 12.1 95 312-418 165-260 (360)
84 COG0800 Eda 2-keto-3-deoxy-6-p 74.2 33 0.00071 32.7 10.0 90 314-420 23-115 (211)
85 cd07944 DRE_TIM_HOA_like 4-hyd 72.8 79 0.0017 31.2 13.0 138 311-458 15-176 (266)
86 PRK06552 keto-hydroxyglutarate 72.5 16 0.00035 34.9 7.8 108 314-442 23-135 (213)
87 PF01081 Aldolase: KDPG and KH 71.6 9.2 0.0002 36.1 5.8 106 314-441 18-126 (196)
88 cd04734 OYE_like_3_FMN Old yel 70.1 18 0.00038 37.2 8.0 68 312-381 224-312 (343)
89 TIGR03569 NeuB_NnaB N-acetylne 69.7 14 0.00031 37.7 7.1 88 314-413 74-161 (329)
90 TIGR03128 RuMP_HxlA 3-hexulose 69.6 50 0.0011 30.8 10.4 116 314-443 10-133 (206)
91 TIGR03586 PseI pseudaminic aci 67.7 19 0.00041 36.8 7.5 93 314-418 75-168 (327)
92 PRK12344 putative alpha-isopro 67.0 79 0.0017 34.5 12.6 133 311-445 22-180 (524)
93 PF00478 IMPDH: IMP dehydrogen 66.9 18 0.00038 37.4 7.1 91 346-448 140-245 (352)
94 PRK08195 4-hyroxy-2-oxovalerat 66.6 74 0.0016 32.6 11.7 142 311-464 20-186 (337)
95 cd07937 DRE_TIM_PC_TC_5S Pyruv 66.0 1.1E+02 0.0023 30.4 12.4 128 312-448 17-174 (275)
96 TIGR01302 IMP_dehydrog inosine 65.3 14 0.0003 39.5 6.3 110 344-476 254-378 (450)
97 PRK00278 trpC indole-3-glycero 65.2 26 0.00057 34.4 7.8 112 314-443 71-187 (260)
98 PRK11613 folP dihydropteroate 64.7 33 0.00072 34.3 8.4 98 309-421 31-143 (282)
99 PF03102 NeuB: NeuB family; I 64.2 32 0.00068 33.6 8.0 48 313-361 53-100 (241)
100 PLN02925 4-hydroxy-3-methylbut 64.0 15 0.00032 40.9 6.2 64 354-427 154-239 (733)
101 cd04726 KGPDC_HPS 3-Keto-L-gul 63.4 57 0.0012 30.2 9.5 115 314-443 11-133 (202)
102 PRK00915 2-isopropylmalate syn 62.0 90 0.002 34.0 11.8 131 311-444 21-170 (513)
103 PRK02048 4-hydroxy-3-methylbut 61.4 16 0.00034 40.1 5.8 63 354-426 85-169 (611)
104 PRK07107 inosine 5-monophospha 61.4 53 0.0012 35.6 9.9 128 314-448 239-386 (502)
105 PRK09389 (R)-citramalate synth 61.3 77 0.0017 34.3 11.1 131 311-445 19-165 (488)
106 TIGR03217 4OH_2_O_val_ald 4-hy 61.3 1.1E+02 0.0024 31.3 11.7 121 311-441 19-161 (333)
107 cd00452 KDPG_aldolase KDPG and 60.7 42 0.00091 31.2 8.0 108 314-443 14-124 (190)
108 TIGR01305 GMP_reduct_1 guanosi 59.8 16 0.00034 37.4 5.1 94 347-446 142-244 (343)
109 PF00682 HMGL-like: HMGL-like 59.7 47 0.001 31.7 8.4 129 312-443 10-157 (237)
110 cd03174 DRE_TIM_metallolyase D 59.3 76 0.0016 30.7 9.9 120 312-442 15-165 (265)
111 PRK05692 hydroxymethylglutaryl 58.8 88 0.0019 31.3 10.3 128 311-443 21-175 (287)
112 cd04747 OYE_like_5_FMN Old yel 58.7 38 0.00083 35.1 7.9 69 312-381 231-325 (361)
113 KOG2550 IMP dehydrogenase/GMP 58.3 27 0.00058 36.5 6.4 96 342-445 279-385 (503)
114 PLN02321 2-isopropylmalate syn 55.8 1.3E+02 0.0029 33.6 11.9 134 311-447 103-264 (632)
115 PLN02746 hydroxymethylglutaryl 54.5 1.3E+02 0.0029 31.0 10.9 131 311-446 63-220 (347)
116 TIGR01303 IMP_DH_rel_1 IMP deh 54.4 27 0.00059 37.6 6.2 98 344-447 255-361 (475)
117 PRK06843 inosine 5-monophospha 52.5 26 0.00056 36.9 5.5 95 346-446 185-288 (404)
118 COG1167 ARO8 Transcriptional r 52.1 53 0.0012 35.1 8.0 94 315-415 164-264 (459)
119 cd07948 DRE_TIM_HCS Saccharomy 52.1 1.2E+02 0.0027 29.7 10.0 127 311-441 17-159 (262)
120 cd00381 IMPDH IMPDH: The catal 51.0 1E+02 0.0022 31.4 9.5 112 321-445 98-228 (325)
121 PRK06852 aldolase; Validated 48.9 52 0.0011 33.2 6.8 71 369-445 121-210 (304)
122 PRK07807 inosine 5-monophospha 48.6 35 0.00077 36.8 5.9 94 344-445 257-361 (479)
123 PRK08508 biotin synthase; Prov 48.1 2E+02 0.0043 28.5 10.9 109 313-426 40-167 (279)
124 PLN02274 inosine-5'-monophosph 47.8 36 0.00078 37.0 5.9 115 344-475 278-401 (505)
125 TIGR00973 leuA_bact 2-isopropy 47.4 1.4E+02 0.003 32.4 10.3 133 311-446 18-169 (494)
126 PRK14040 oxaloacetate decarbox 47.0 2.6E+02 0.0057 31.1 12.5 124 311-443 22-175 (593)
127 cd04735 OYE_like_4_FMN Old yel 46.0 1E+02 0.0022 31.8 8.6 67 312-381 231-310 (353)
128 PF01207 Dus: Dihydrouridine s 44.9 44 0.00095 33.8 5.7 65 315-381 137-210 (309)
129 COG0434 SgcQ Predicted TIM-bar 44.5 45 0.00097 32.4 5.2 85 368-458 168-257 (263)
130 PRK13957 indole-3-glycerol-pho 44.5 95 0.0021 30.4 7.7 98 312-419 60-159 (247)
131 cd00739 DHPS DHPS subgroup of 43.4 1.1E+02 0.0024 30.1 8.1 98 310-422 18-131 (257)
132 PRK09140 2-dehydro-3-deoxy-6-p 42.0 1.3E+02 0.0028 28.5 8.1 108 314-442 20-130 (206)
133 cd00331 IGPS Indole-3-glycerol 41.8 1.9E+02 0.0041 27.2 9.3 72 339-419 57-129 (217)
134 PRK08227 autoinducer 2 aldolas 40.3 1E+02 0.0022 30.6 7.2 70 369-445 100-180 (264)
135 PRK12928 lipoyl synthase; Prov 39.8 2.3E+02 0.0051 28.3 9.9 158 312-473 86-279 (290)
136 COG0520 csdA Selenocysteine ly 39.2 57 0.0012 34.3 5.7 68 340-416 122-197 (405)
137 PF00218 IGPS: Indole-3-glycer 38.8 82 0.0018 31.0 6.3 98 312-419 67-166 (254)
138 PRK09250 fructose-bisphosphate 38.6 1E+02 0.0022 31.8 7.1 78 369-453 152-247 (348)
139 KOG2367 Alpha-isopropylmalate 38.3 1.6E+02 0.0035 31.6 8.5 121 311-434 74-212 (560)
140 COG2089 SpsE Sialic acid synth 38.1 2.7E+02 0.0059 28.5 9.8 82 321-413 94-175 (347)
141 PRK08960 hypothetical protein; 38.0 1.2E+02 0.0026 31.2 7.9 96 316-417 102-204 (387)
142 PLN02979 glycolate oxidase 37.7 1E+02 0.0022 32.1 6.9 94 340-445 209-309 (366)
143 PRK12331 oxaloacetate decarbox 37.7 2.5E+02 0.0054 30.1 10.2 124 311-445 21-176 (448)
144 KOG2599 Pyridoxal/pyridoxine/p 37.2 1.1E+02 0.0023 30.5 6.6 81 315-416 96-185 (308)
145 COG0134 TrpC Indole-3-glycerol 36.8 2.6E+02 0.0056 27.6 9.3 94 312-418 65-163 (254)
146 PRK12581 oxaloacetate decarbox 36.8 5E+02 0.011 28.0 12.2 128 311-447 30-187 (468)
147 cd04728 ThiG Thiazole synthase 36.6 2.7E+02 0.0058 27.3 9.2 105 305-425 67-189 (248)
148 TIGR01496 DHPS dihydropteroate 36.2 1.5E+02 0.0034 29.0 7.9 95 311-421 18-128 (257)
149 TIGR00977 LeuA_rel 2-isopropyl 36.2 4.5E+02 0.0098 28.8 12.1 132 311-443 18-174 (526)
150 PF01408 GFO_IDH_MocA: Oxidore 36.1 1.8E+02 0.0038 24.1 7.4 74 326-418 43-120 (120)
151 cd04736 MDH_FMN Mandelate dehy 35.9 1.9E+02 0.0041 30.0 8.7 110 342-461 224-343 (361)
152 PRK10605 N-ethylmaleimide redu 35.4 2.3E+02 0.0049 29.3 9.3 67 312-381 244-318 (362)
153 PRK13523 NADPH dehydrogenase N 35.2 89 0.0019 32.0 6.2 68 312-381 223-302 (337)
154 PRK05567 inosine 5'-monophosph 34.6 79 0.0017 34.1 6.0 111 330-446 242-363 (486)
155 TIGR02026 BchE magnesium-proto 34.5 4.5E+02 0.0098 28.3 11.8 128 312-441 221-371 (497)
156 cd03332 LMO_FMN L-Lactate 2-mo 34.1 1E+02 0.0022 32.3 6.4 106 341-459 240-360 (383)
157 PLN02493 probable peroxisomal 34.1 1.2E+02 0.0027 31.5 7.0 107 341-459 211-331 (367)
158 TIGR03471 HpnJ hopanoid biosyn 33.0 5.2E+02 0.011 27.6 11.9 127 312-440 226-370 (472)
159 COG1103 Archaea-specific pyrid 32.6 27 0.00059 34.6 1.8 56 392-447 167-227 (382)
160 PRK10874 cysteine sulfinate de 32.4 1.5E+02 0.0033 30.5 7.6 97 315-418 90-197 (401)
161 TIGR01108 oadA oxaloacetate de 32.0 4.8E+02 0.01 29.0 11.5 121 312-443 17-169 (582)
162 PF13797 Post_transc_reg: Post 31.4 30 0.00065 28.1 1.6 33 5-37 39-71 (87)
163 COG2861 Uncharacterized protei 31.3 3.4E+02 0.0073 26.6 8.9 122 253-423 97-219 (250)
164 PLN02656 tyrosine transaminase 31.2 1.9E+02 0.0041 30.1 8.1 94 316-416 106-207 (409)
165 PRK10415 tRNA-dihydrouridine s 31.1 86 0.0019 31.8 5.3 63 317-381 150-221 (321)
166 PRK11840 bifunctional sulfur c 31.1 3.2E+02 0.0069 27.9 9.1 163 266-446 96-288 (326)
167 TIGR02708 L_lactate_ox L-lacta 30.7 2.2E+02 0.0047 29.6 8.2 108 340-459 214-335 (367)
168 COG0119 LeuA Isopropylmalate/h 30.7 3.6E+02 0.0077 28.5 9.9 144 311-457 19-180 (409)
169 PF05690 ThiG: Thiazole biosyn 30.5 1.7E+02 0.0037 28.5 6.7 153 266-439 21-200 (247)
170 COG1707 ACT domain-containing 30.3 92 0.002 28.6 4.6 68 354-434 121-189 (218)
171 PRK00208 thiG thiazole synthas 30.3 4E+02 0.0087 26.1 9.3 105 305-425 67-189 (250)
172 COG0403 GcvP Glycine cleavage 29.3 1.1E+02 0.0024 32.3 5.6 123 315-446 149-283 (450)
173 TIGR03392 FeS_syn_CsdA cystein 29.0 2E+02 0.0043 29.6 7.7 81 329-416 106-192 (398)
174 COG1105 FruK Fructose-1-phosph 28.4 2.2E+02 0.0048 28.9 7.5 104 297-416 101-219 (310)
175 TIGR03540 DapC_direct LL-diami 28.1 2.8E+02 0.006 28.3 8.6 99 316-416 101-202 (383)
176 PLN02535 glycolate oxidase 27.7 1.9E+02 0.004 30.1 7.0 93 341-445 210-309 (364)
177 PRK06348 aspartate aminotransf 27.6 2.5E+02 0.0055 28.8 8.2 99 316-416 99-200 (384)
178 PRK07455 keto-hydroxyglutarate 27.2 4.1E+02 0.009 24.5 8.8 108 314-442 22-131 (187)
179 PRK08247 cystathionine gamma-s 27.1 4E+02 0.0087 27.2 9.6 118 317-441 78-200 (366)
180 PRK11197 lldD L-lactate dehydr 27.0 2.3E+02 0.0049 29.7 7.6 37 342-381 233-270 (381)
181 PRK06855 aminotransferase; Val 26.8 4.8E+02 0.01 27.4 10.3 98 316-415 106-208 (433)
182 PRK07337 aminotransferase; Val 26.6 3E+02 0.0065 28.2 8.6 96 316-417 100-202 (388)
183 PTZ00433 tyrosine aminotransfe 26.5 2.8E+02 0.0061 28.8 8.4 95 316-416 114-215 (412)
184 PF00072 Response_reg: Respons 26.2 3.3E+02 0.0072 21.6 8.1 75 314-400 31-110 (112)
185 PLN00143 tyrosine/nicotianamin 26.0 3.2E+02 0.0069 28.4 8.7 98 316-416 107-208 (409)
186 PRK05458 guanosine 5'-monophos 25.5 1E+02 0.0023 31.4 4.7 92 346-446 131-233 (326)
187 PLN02460 indole-3-glycerol-pho 25.5 2E+02 0.0044 29.5 6.7 97 312-418 138-237 (338)
188 cd07945 DRE_TIM_CMS Leptospira 25.3 6.8E+02 0.015 24.8 13.0 134 311-444 14-168 (280)
189 PRK06290 aspartate aminotransf 24.7 4.2E+02 0.009 27.7 9.3 100 315-416 115-217 (410)
190 PF12451 VPS11_C: Vacuolar pro 24.4 69 0.0015 23.0 2.3 25 18-43 22-46 (49)
191 PRK07550 hypothetical protein; 24.3 3.5E+02 0.0077 27.6 8.6 95 316-416 100-201 (386)
192 PF00155 Aminotran_1_2: Aminot 24.2 2.6E+02 0.0057 28.0 7.5 102 316-418 78-188 (363)
193 cd02929 TMADH_HD_FMN Trimethyl 24.0 3.5E+02 0.0076 28.0 8.4 36 345-381 280-316 (370)
194 PLN03228 methylthioalkylmalate 24.0 4.3E+02 0.0093 28.8 9.2 131 311-444 101-260 (503)
195 cd00615 Orn_deC_like Ornithine 24.0 1.3E+02 0.0029 29.7 5.1 89 323-417 93-189 (294)
196 PRK09427 bifunctional indole-3 23.9 1.6E+02 0.0035 31.6 5.9 97 312-419 69-167 (454)
197 PLN02389 biotin synthase 23.6 6.2E+02 0.013 26.4 10.1 115 312-431 115-248 (379)
198 PRK05481 lipoyl synthase; Prov 23.5 2.4E+02 0.0051 28.2 6.8 80 393-474 175-272 (289)
199 TIGR01769 GGGP geranylgeranylg 23.4 2.5E+02 0.0054 26.7 6.5 65 313-381 131-202 (205)
200 PRK05764 aspartate aminotransf 22.6 3.3E+02 0.0072 27.8 8.0 96 316-417 101-203 (393)
201 COG2022 ThiG Uncharacterized e 21.7 7.1E+02 0.015 24.3 9.1 102 312-426 79-197 (262)
202 PLN02187 rooty/superroot1 21.6 3.4E+02 0.0073 28.9 7.9 95 315-416 140-242 (462)
203 TIGR01264 tyr_amTase_E tyrosin 21.5 3.8E+02 0.0082 27.6 8.2 91 316-416 105-206 (401)
204 PRK14847 hypothetical protein; 21.5 8.1E+02 0.018 25.1 10.2 120 311-433 49-194 (333)
205 COG2008 GLY1 Threonine aldolas 21.4 4.1E+02 0.0089 27.3 8.0 113 314-436 60-181 (342)
206 PRK12330 oxaloacetate decarbox 21.4 9.2E+02 0.02 26.2 11.1 125 311-446 22-178 (499)
207 PRK13802 bifunctional indole-3 21.2 3.2E+02 0.007 31.0 7.9 98 312-419 69-168 (695)
208 TIGR03551 F420_cofH 7,8-dideme 21.0 6.6E+02 0.014 25.5 9.7 111 312-426 69-209 (343)
209 TIGR02195 heptsyl_trn_II lipop 21.0 1.9E+02 0.0041 29.0 5.7 17 425-441 259-275 (334)
210 COG0107 HisF Imidazoleglycerol 21.0 5.2E+02 0.011 25.2 8.0 106 266-381 110-226 (256)
211 PRK08649 inosine 5-monophospha 20.8 6.4E+02 0.014 26.2 9.5 92 342-445 175-287 (368)
212 PF05184 SapB_1: Saposin-like 20.7 1.2E+02 0.0026 19.9 2.9 26 3-28 14-39 (39)
213 PRK08255 salicylyl-CoA 5-hydro 20.7 3.2E+02 0.0069 31.3 7.9 68 312-381 634-714 (765)
214 TIGR01303 IMP_DH_rel_1 IMP deh 20.6 1.2E+02 0.0026 32.7 4.2 75 366-453 227-304 (475)
215 PRK00979 tetrahydromethanopter 20.6 5.8E+02 0.013 25.9 8.8 114 314-465 53-188 (308)
216 PF01075 Glyco_transf_9: Glyco 20.6 48 0.001 31.6 1.1 44 400-451 174-217 (247)
217 PRK07681 aspartate aminotransf 20.4 4.9E+02 0.011 26.7 8.8 99 316-416 103-204 (399)
218 PRK05957 aspartate aminotransf 20.3 3.5E+02 0.0076 27.8 7.6 84 325-416 109-198 (389)
219 PRK09276 LL-diaminopimelate am 20.1 5.4E+02 0.012 26.2 8.9 99 316-416 103-204 (385)
220 TIGR00735 hisF imidazoleglycer 20.1 1.1E+02 0.0024 29.7 3.6 89 316-414 155-253 (254)
221 TIGR03537 DapC succinyldiamino 20.1 5.1E+02 0.011 26.0 8.6 97 316-418 70-176 (350)
222 cd05710 SIS_1 A subgroup of th 20.0 94 0.002 26.4 2.7 49 388-436 51-99 (120)
223 COG1830 FbaB DhnA-type fructos 20.0 3E+02 0.0064 27.3 6.4 53 397-449 129-192 (265)
No 1
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-117 Score=845.70 Aligned_cols=423 Identities=62% Similarity=0.967 Sum_probs=413.3
Q ss_pred eeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC--
Q 011677 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM-- 124 (479)
Q Consensus 47 I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~-- 124 (479)
|.+|++|+|+||||+|||+|+++|++|++|+++|||+|||.+||.++||+++..|.|+|+.+++.+||+.|+|+|+++
T Consensus 3 ~~kv~aR~I~dSRGnPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~ 82 (433)
T KOG2670|consen 3 IIKVKARQIYDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNL 82 (433)
T ss_pred ceeeehhhhhhcCCCCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCC
Confidence 344999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC-CcccccceEEeecCCccCCC
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT-NLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~-~~~~Pvp~~~~i~GG~~~~~ 203 (479)
|+.+|++||+.|..+|||.|+|++|+||+.+||+|+|++.|...|+|||+||.++.++. +..+|||+||+++||.|++|
T Consensus 83 dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn 162 (433)
T KOG2670|consen 83 DVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGN 162 (433)
T ss_pred ChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccc
Confidence 99999999999999999999999999999999999999999999999999999987765 56899999999999999999
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
+|.+|||||.|.++.+++|+++++.|+|++||.++|+|||..+++|||||||+|++.+.++.|++|.+|++.+||+ ++|
T Consensus 163 ~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt-~ki 241 (433)
T KOG2670|consen 163 KLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYT-GKV 241 (433)
T ss_pred hhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCC-Cce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 875
Q ss_pred ---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhc
Q 011677 284 ---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVG 358 (479)
Q Consensus 284 ---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~g 358 (479)
+|+|++ || .+|+|+++|++|++|+++++|++++.++|.+++++|||++|||||+++||++|.+|.... ++|+|
T Consensus 242 kIgmDvAaseF~--~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVg 319 (433)
T KOG2670|consen 242 KIGMDVAASEFY--KDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVG 319 (433)
T ss_pred EEEEeechhhhh--cCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEec
Confidence 999999 99 789999999999999999999999999999999999999999999999999999999889 99999
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~ 438 (479)
||+.+|||+++++++++++||++ ++|+||+|++||.++++++|+++||.+|+||+||||+|+||+||.||++++
T Consensus 320 DDLtvTnpkri~~Ai~~k~cN~L------LlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeDtFIaDL~VGl~tg 393 (433)
T KOG2670|consen 320 DDLTVTNPKRIATAIEEKACNAL------LLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGTG 393 (433)
T ss_pred CcccccCHHHHHHHHHHhhccce------EeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcccchHHHhhhhhccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 439 QIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 439 ~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|||+|+||||||++||||||||||||+++++|+|++||+|
T Consensus 394 qIKtGApcRsERlaKYNqLLRIeEelg~~a~~aG~~f~~~ 433 (433)
T KOG2670|consen 394 QIKTGAPCRSERLAKYNQLLRIEEELGDDARYAGENFRNP 433 (433)
T ss_pred eeecCCCchHHHHHHHHHHHHHHHHhcccceeccccccCC
Confidence 9999999999999999999999999999999999999986
No 2
>PLN00191 enolase
Probab=100.00 E-value=3.7e-108 Score=853.59 Aligned_cols=450 Identities=66% Similarity=1.050 Sum_probs=427.3
Q ss_pred HHHHhhhcCCCcHHHHHHHhhhcCCceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCC
Q 011677 20 VNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKG 99 (479)
Q Consensus 20 ln~~~~~~p~d~~~~l~~~~~~~~~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~ 99 (479)
+|.++..+|+|||+|||+||+++.||+|++|++|+|+||+|+|||+|+|+|++|.+++++|||+|||.+||.+++|+++.
T Consensus 1 ~~~~~~~~~~d~~~~la~~~~~~~~~~I~~v~~r~ildsrG~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~ 80 (457)
T PLN00191 1 VNAAVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKD 80 (457)
T ss_pred CcccccCCCcChHHHHHHHHhhccCCeeeEEEEEEEEcCCCCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcc
Confidence 36788999999999999999887788999999999999999999999999999988999999999999999999999976
Q ss_pred ccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcc
Q 011677 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179 (479)
Q Consensus 100 ~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~ 179 (479)
|.|+++.+|++.|++.|+|.|+|+|+.||++||++|.++|+|+|++++|+||++|||+|+|+++|+.+|+|||+||+++
T Consensus 81 -~~g~gv~~Av~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~ 159 (457)
T PLN00191 81 -YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADL 159 (457)
T ss_pred -cCCccHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred cCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCC
Q 011677 180 AGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNI 259 (479)
Q Consensus 180 ~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~ 259 (479)
.+..+.++|+|++|+||||+|+++.+++||||++|.++.+++|+++++.++|+.+|++|+.|+|..++++||+|||+|++
T Consensus 160 gg~~~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGg~ap~~ 239 (457)
T PLN00191 160 AGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNI 239 (457)
T ss_pred CCCCCccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcCccCCCCCcCCCC
Confidence 33446789999999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeee
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIE 335 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iE 335 (479)
++++++|++|++|++++|++ ++| +|||++ ||++ +++|+++|++++++++..+|++|++++|.+|+++|||.|||
T Consensus 240 ~~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~-~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IE 317 (457)
T PLN00191 240 QDNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTK-DKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIE 317 (457)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhccc-CCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999998 655 999999 9943 78999987765555555689999999999999999999999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
|||+++|+++|++|+++. +||+|||++++|+++++++++.+++|++ +||++|+||||++++++++|+++|+.+
T Consensus 318 DPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i------~iKl~qiGGITea~~~a~lA~~~G~~~ 391 (457)
T PLN00191 318 DPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNAL------LLKVNQIGTVTESIEAVKMSKAAGWGV 391 (457)
T ss_pred CCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999 9999999988999999999999999999 999999999999999999999999999
Q ss_pred EEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 415 ~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|+||+++||+|++++|||||++++++|+|+|+|+||++||||||||||+|++.++|.|..|+++
T Consensus 392 ~ishrsgET~d~~~Adlava~~~~~ik~G~~~r~er~aKyN~llriee~l~~~~~~~~~~~~~~ 455 (457)
T PLN00191 392 MTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRKP 455 (457)
T ss_pred EeCCCCccchHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHHHHHhcccceecccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999888764
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-106 Score=792.44 Aligned_cols=410 Identities=51% Similarity=0.775 Sum_probs=395.0
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
|..|++|.+|+|+||||+|||+|+|+|++|.+ ++++|||+|||.+||.++||++ .+|.|+|+.+|++.+|+.|+|.|+
T Consensus 1 m~~I~~i~aReIlDSRGnpTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd-~ry~gkGV~~AV~nVn~~Iap~Li 79 (423)
T COG0148 1 MSAIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGD-SRYLGKGVLKAVANVNEIIAPALI 79 (423)
T ss_pred CcccceeEEEEEEcCCCCceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCc-cccccccHHHHHHHHHHHHHHHHc
Confidence 56899999999999999999999999999988 7889999999999999999999 899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+|+.||..||+.|.++|+|+|+|++|+||+.|||+|+++|+|+.+|+|||+|||| .....+|+|++|+++||.|++
T Consensus 80 G~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG---~~a~~lPvPm~NvinGG~HA~ 156 (423)
T COG0148 80 GLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGG---LNALVLPVPMMNVINGGAHAD 156 (423)
T ss_pred CCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcC---ccccccccceeeeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999 446789999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
|.+++|||||+|.++.++.|+++++.++|+++|++|+.| |. .+.|||||||+|++...+++|+.+.+|++++|+.|+
T Consensus 157 n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~-g~-~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~ 234 (423)
T COG0148 157 NNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEK-GL-STGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGE 234 (423)
T ss_pred CCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhc-Cc-cccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999988 65 456999999999999999999999999999999986
Q ss_pred ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
+| +|||++ || ++++|.++ + ..+|++|++++|.+|+++|||.+|||||+++||++|++|++++ +
T Consensus 235 ~i~~alD~Aasefy--~~~~Y~~~-------~-~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kv 304 (423)
T COG0148 235 DIALALDVAASEFY--KDGKYVLE-------G-ESLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKV 304 (423)
T ss_pred ceeeeehhhhhhhc--cCCeeeec-------C-cccCHHHHHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeE
Confidence 45 999999 99 57779987 2 4789999999999999999999999999999999999999999 8
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
+|||||+++||+++++++++++++|.| .||+||+||+||+++.+++|+++|+.+|+|||||||+|++++|||||
T Consensus 305 qivGDDLfvTN~~~l~~gi~~g~aNai------LIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa 378 (423)
T COG0148 305 QIVGDDLFVTNPKRLKKGIEKGAANAI------LIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVA 378 (423)
T ss_pred EEECCcceecCHHHHHHHHHhccCceE------EEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
++++|||+|.|+|+||++||||||||||+|+..+.|.|.++
T Consensus 379 ~~agqIKTGs~sRseRiaKyNqLlrIEeeLg~~a~y~g~~~ 419 (423)
T COG0148 379 TNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIKE 419 (423)
T ss_pred hCCCeeecCCCcchhHHHHHHHHHHHHHHhhhccccCChHh
Confidence 99999999999999999999999999999999999999875
No 4
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=2.8e-104 Score=821.78 Aligned_cols=424 Identities=59% Similarity=0.926 Sum_probs=404.1
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
||+|++|++|+|+||+|+|||+|+|+|++|.+++++|||+|||++||.++||+++.+|.|+++.+|++.+++.|+|.|+|
T Consensus 1 ~~~I~~v~~r~i~dSrg~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~v~~~i~~~LiG 80 (439)
T PTZ00081 1 MSTIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVENVNEIIAPALIG 80 (439)
T ss_pred CcEEEEEEEEEEecCCCCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999988999999999999999999999988999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHh-hhccCC-----CCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC--CCcccccceEEee
Q 011677 124 MDPILQSQIDQAMID-LDKTEK-----KGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK--TNLTLPVPAFTVI 195 (479)
Q Consensus 124 ~d~~~~~~id~~l~~-~~~~~~-----~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~--~~~~~Pvp~~~~i 195 (479)
+|+.+|++||++|.+ +|+|+| ++++|+||++|||+|+|+++|+.+|+|||+||++..+. .+.++|+|++|+|
T Consensus 81 ~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~~~lP~P~~nii 160 (439)
T PTZ00081 81 KDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVI 160 (439)
T ss_pred CChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCCccccceeEEec
Confidence 999999999999999 999999 99999999999999999999999999999999654333 3458999999999
Q ss_pred cCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHh
Q 011677 196 SGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINR 275 (479)
Q Consensus 196 ~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~ 275 (479)
|||+|+++++++||||++|.++.++.|+++++.++|+.+|++|+.|+|..++++||+|+|+|++++++++|+++++|+++
T Consensus 161 nGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~~vgdeGgfap~~~~~eeal~ll~eAi~~ 240 (439)
T PTZ00081 161 NGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKK 240 (439)
T ss_pred cCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred cCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 276 TGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 276 ~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+|++ +++ +|||++ ||+.++++|+++|++|.+++++.+|++|++++|.+++++|||.||||||+++|+++|++|++
T Consensus 241 ag~~-~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~ 319 (439)
T PTZ00081 241 AGYE-GKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTA 319 (439)
T ss_pred cCCc-CceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHH
Confidence 9998 655 999999 99766789999887765444457899999999999999999999999999999999999999
Q ss_pred hh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHH
Q 011677 352 IC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFI 428 (479)
Q Consensus 352 ~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~ 428 (479)
++ +||+|||++++|+++++++++.+++|++ +||++|+||||++++++++|+++|+.+++||++|||+|+++
T Consensus 320 ~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i------~iKvnqiGGITe~l~~a~lA~~~Gi~~iishrsgETed~~i 393 (439)
T PTZ00081 320 AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNAL------LLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFI 393 (439)
T ss_pred hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEE------EeccccccCHHHHHHHHHHHHHcCCcEEEeCCCchhHHHHH
Confidence 99 9999999988999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCcc
Q 011677 429 ADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474 (479)
Q Consensus 429 ~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~ 474 (479)
+|||||++++|||+|+|+|+||++||||||||||+|++++.|.|++
T Consensus 394 adLAVa~~~~~iK~G~~~r~er~aKyN~llriee~l~~~~~~~~~~ 439 (439)
T PTZ00081 394 ADLVVGLGTGQIKTGAPCRSERLAKYNQLLRIEEELGSNAVYAGEN 439 (439)
T ss_pred HHHHHHcCCCceecCCCcchHHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999998864
No 5
>PTZ00378 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-102 Score=798.25 Aligned_cols=442 Identities=20% Similarity=0.274 Sum_probs=408.4
Q ss_pred chHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC-CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecC
Q 011677 2 SVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV-PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVP 80 (479)
Q Consensus 2 ~~~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~-~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~p 80 (479)
|-+.|+++|+++++|++++|+++..+|+||++|||.||++++ .++|++|.+|+|+||+|+|||+|+|+|.+|.+ +|
T Consensus 5 ~~~~y~~~~~~~~~l~ea~~~~v~~~~~d~~~~l~~~f~~~~~~~~I~~i~areIlDSrGnPTVev~v~l~~G~~---vP 81 (518)
T PTZ00378 5 SWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPAGETVLRFTLELLNGME---VS 81 (518)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCeeeEEEEEEEEcCCCCeeEEEEEEECCCCE---EC
Confidence 568999999999999999999999999999999999999877 77999999999999999999999999999974 99
Q ss_pred CCCCCCceeeeeeccCCCCc-c-ccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHH
Q 011677 81 SGDPSGMYEALELRDGDKGT-Y-LGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSI 158 (479)
Q Consensus 81 s~~~~G~~Ea~~~~d~~~~~-y-~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~Avsi 158 (479)
||+||| ||.++||+++.+ | .|+++.+|+. +.|+|.|+|+++.||.+||+.|.++|+|+|++++|+||+.||||
T Consensus 82 SGAStG--EA~elRDgd~~~~~g~gkgV~~Av~---~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~ 156 (518)
T PTZ00378 82 SGALLS--PSHGERDGEADATLDPAEYTTEALQ---NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSI 156 (518)
T ss_pred CCCccc--ceeeeecCCcccccCCCccHHHHHH---hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHH
Confidence 999999 999999998665 7 7889999977 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchhHHHHhcccCC----CCcccccceEEeecCCccCCCcccccceeeccCCC--CcHHHHHHHHHHHHH
Q 011677 159 AACKAGAAEKEVPLYKHIADLAGK----TNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGA--SSFGEALQMGSETYH 232 (479)
Q Consensus 159 Al~da~ak~~g~PLy~lLgg~~~~----~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~--~~~~ea~~~~~e~~~ 232 (479)
|++.++|+..++|||+|||++.+. ....+|+|++|+||||+|+++++++|||||+|.++ .++.|+++++.|+|+
T Consensus 157 A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh 236 (518)
T PTZ00378 157 VASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFH 236 (518)
T ss_pred HHHHHHHHHcCCCHHHHhhccccccccCCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999985321 24579999999999999999999999999999977 899999999999999
Q ss_pred HHHHHHHhhhCCCCcccCCCCCC-CCCCCchHHHHHHHHHHHHhcCCCCC-ce---eecccc-c------------cccc
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGL-APNISSIREGLDLVKEAINRTGIPSS-KW---SDCKSS-M------------HNIY 294 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~-~~~~~~~~~~l~~v~~ai~~~g~~~~-~i---iD~aa~-~------------~~~~ 294 (479)
+|++ | ..+++|||||| .|++++++++|++|.+|++++||+|+ +| +|||+| | |+..
T Consensus 237 ~L~~------~-~~t~vGDEGGfaap~~~~~eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~ 309 (518)
T PTZ00378 237 HFCQ------S-HNSSVRSDGSLHWDGFANLTDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEA 309 (518)
T ss_pred HHhh------c-ccCccCCCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccc
Confidence 9953 3 35789999999 67788999999999999999999986 46 999999 9 9432
Q ss_pred C-c---eeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC--ceeeecCCCccCHHHHHHHHhhh---hhhhcCCcccc-
Q 011677 295 S-T---KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP--IVSIEDPFDKEDWEHTKSVLQIC---QQVVGDDLLMS- 364 (479)
Q Consensus 295 ~-g---~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~--i~~iEdP~~~~D~~g~~~L~~~~---~~I~gde~~~t- 364 (479)
+ + +|.+. + +...+|++||+++|.+|+++|| |.+|||||+++||++|++|++++ |+|+|||+++|
T Consensus 310 k~~~e~~Y~l~-~-----~~~~~t~~elieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~ 383 (518)
T PTZ00378 310 KDDCEVLYSLF-P-----GEPDVTGDQLSEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARS 383 (518)
T ss_pred cCCCceeeeec-C-----CCCCCCHHHHHHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCC
Confidence 1 2 68874 1 1234799999999999999999 99999999999999999999999 99999999999
Q ss_pred CHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE---EecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 365 NPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV---ISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 365 ~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~---v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
|+++++++++.++||.+ +||+||+|||||+++++++|+++|+.+| +||+|| +|+|++|||||++++|||
T Consensus 384 n~~ri~~gi~~~~~Nai------LIK~NQIGTlSEtieav~lA~~~g~~~v~v~vShRSG--eD~~IAdLAVa~ga~~IK 455 (518)
T PTZ00378 384 EYKKVESGLRGLWTSNI------VLNPCAIGTLSDVVEIVRAVGEDEGRAVTVLVQTLAG--NAATAAHLAVAMGARFLC 455 (518)
T ss_pred CHHHHHHHHhcCCCceE------EEccccceeHHHHHHHHHHHHHcCCcEEccccCCCcC--CccHHHHHHHHcCCCccc
Confidence 89999999999999999 9999999999999999999999999999 999999 799999999999999999
Q ss_pred cCCCCchhHHHHhHHHHHHHHHhCCCccccC
Q 011677 442 AGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472 (479)
Q Consensus 442 ~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~ 472 (479)
+|+|+|+||++||||||||||||++....+.
T Consensus 456 tGa~~r~ER~aKyNqLlrIeeeLg~~~~l~~ 486 (518)
T PTZ00378 456 SGGLFSAHQCEVVSQLASRQDELTHSRMLAP 486 (518)
T ss_pred cCCCccchHHHHHHHHHHHHHHhCcCCccCC
Confidence 9999999999999999999999987665443
No 6
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=2.9e-94 Score=751.02 Aligned_cols=413 Identities=50% Similarity=0.777 Sum_probs=392.5
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhc
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALV 122 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~Li 122 (479)
||+|++|++|+|+||+|+|||+|+|+|++|.+ ++.+|||+|+|.+||.+++|+++.+|.|+++.+++..|++.|+|.|+
T Consensus 1 ~~~I~~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~v~~~iap~Li 80 (425)
T PRK00077 1 MSKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVENVNEEIAPALI 80 (425)
T ss_pred CCeEEEEEEEEEEcCCCCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999976 99999999999999999999998899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCC
Q 011677 123 GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAG 202 (479)
Q Consensus 123 G~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~ 202 (479)
|+||.+|++||+.|.+++++.+++++|.||++|||+|+||++||.+|+|||+|||| ..+.++|+|+|++++||.|++
T Consensus 81 G~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG---~~~~~~pvp~~n~i~GG~ha~ 157 (425)
T PRK00077 81 GLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGG---PNAKVLPVPMMNIINGGAHAD 157 (425)
T ss_pred CCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCcccccceeEEEEccccccc
Confidence 99999999999999999999999999999999999999999999999999999998 334579999999999999999
Q ss_pred CcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-
Q 011677 203 NNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS- 281 (479)
Q Consensus 203 ~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~- 281 (479)
+++++||||++|.+..+++++++++.++|+++|.+++.| |. .+++|++|+|.|++++++++|++|++|++++|++++
T Consensus 158 ~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~-g~-~~~vGdeGg~~p~~~~~~e~l~~lreAi~~ag~~~G~ 235 (425)
T PRK00077 158 NNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEK-GL-STAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGE 235 (425)
T ss_pred CchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCcCCcCCCccchHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999877 64 578999999999999999999999999999999975
Q ss_pred ce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---h
Q 011677 282 KW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---Q 354 (479)
Q Consensus 282 ~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~ 354 (479)
++ ||+|++ || ++++|+++ ++.||+++++++|.+++++|||.||||||+++|+++|++|++++ +
T Consensus 236 di~l~lD~aas~~~--~~~~y~~~--------~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~i 305 (425)
T PRK00077 236 DIALALDCAASEFY--KDGKYVLE--------GEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKV 305 (425)
T ss_pred ceEEEEehhhhhcc--cCCeeecc--------CCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCC
Confidence 44 999999 99 57899885 24699999999999999999999999999999999999999998 9
Q ss_pred hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhh
Q 011677 355 QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVG 434 (479)
Q Consensus 355 ~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~ 434 (479)
||+|||++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|+||+++||+|++++|||||
T Consensus 306 pI~gdE~~~t~~~~~~~~i~~~a~d~v------~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava 379 (425)
T PRK00077 306 QLVGDDLFVTNTKRLKKGIEKGAANSI------LIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVA 379 (425)
T ss_pred eEEcCCCccCCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHH
Confidence 999999888889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccC
Q 011677 435 LASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQ 477 (479)
Q Consensus 435 ~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~ 477 (479)
++++|+|+|+|+|+||++||||||||||+|++.+.|.| ..|+.
T Consensus 380 ~~~~~ik~G~~~~~er~~k~n~ll~i~~~l~~~~~~~~~~~~~~ 423 (425)
T PRK00077 380 TNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKKAFKN 423 (425)
T ss_pred hCCccccCCCCcchHHHHHHHHHHHHHHHhcccceecchhhccc
Confidence 99999999999999999999999999999999999999 46654
No 7
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=6.4e-93 Score=737.28 Aligned_cols=399 Identities=54% Similarity=0.827 Sum_probs=377.9
Q ss_pred EEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCC
Q 011677 49 KIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPI 127 (479)
Q Consensus 49 ~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~ 127 (479)
+|++|+|+||+|+|||+|+|+|++|.+ ++.+|+|+|+|.+||.+++|+++.+|.|+++.+++..|++.|+|.|+|+||.
T Consensus 1 ~v~~r~i~dsrg~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~ 80 (408)
T cd03313 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVT 80 (408)
T ss_pred CeEEEEEecCCCCceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChh
Confidence 589999999999999999999999877 9999999999999999999999889999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccc
Q 011677 128 LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAI 207 (479)
Q Consensus 128 ~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~ 207 (479)
+|++||+.|.+++++++++++|+||++|||||+||++||.+|+|||+|||| ..+.++|+|+||+|+||+|+++++++
T Consensus 81 dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg---~~~~~lpvp~~nvi~GG~ha~~~~~i 157 (408)
T cd03313 81 DQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGG---LAAYVLPVPMFNVINGGAHAGNKLDF 157 (408)
T ss_pred hHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcC---CCCcccceeeEEEecCcccccCcccc
Confidence 999999999999999999999999999999999999999999999999998 33568999999999999999999999
Q ss_pred cceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-ce---
Q 011677 208 QDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KW--- 283 (479)
Q Consensus 208 ~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~i--- 283 (479)
||||++|.++.+++++++++.++|+++|++|+.|.|..++++|++|+|.|++++++++|+++++|++++|+.++ ++
T Consensus 158 qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~ 237 (408)
T cd03313 158 QEFMIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237 (408)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 99999999999999999999999999999999887767799999999999999999999999999999999874 44
Q ss_pred eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhhcC
Q 011677 284 SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVVGD 359 (479)
Q Consensus 284 iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~gd 359 (479)
||+|++ || ++++|.+.+. .++.||++|+++++.+++++|||.||||||+++|+++|++|++++ +||+||
T Consensus 238 lD~aas~~~--~~~~y~~~~~-----~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gd 310 (408)
T cd03313 238 LDVAASEFY--DEGKYVYDSD-----EGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGD 310 (408)
T ss_pred Eehhhhhhc--ccCcceeccC-----CCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcC
Confidence 999999 99 4677776411 236789999999999999999999999999999999999999996 999999
Q ss_pred CccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCC
Q 011677 360 DLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ 439 (479)
Q Consensus 360 e~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ 439 (479)
|++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|+||+++||+|++++|||||++++|
T Consensus 311 E~~~~~~~~~~~~i~~~a~d~v------~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ 384 (408)
T cd03313 311 DLFVTNPERLKKGIEKKAANAL------LIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred CcccCCHHHHHHHHHhCCCCEE------EEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCc
Confidence 9888889999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchhHHHHhHHHHHHHHH
Q 011677 440 IKAGAPCRGERLAKYNQLLHIEEE 463 (479)
Q Consensus 440 ik~G~~~~~er~~kyn~ll~ie~~ 463 (479)
||+|+|+|+||++|||||||||||
T Consensus 385 ik~G~~~r~er~~k~n~ll~i~~~ 408 (408)
T cd03313 385 IKTGAPCRSERTAKYNQLLRIEEE 408 (408)
T ss_pred cccCCCcchHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
No 8
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=3.9e-92 Score=734.99 Aligned_cols=414 Identities=50% Similarity=0.779 Sum_probs=389.4
Q ss_pred eeEEEEEEEecCCCCceEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 47 ITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 47 I~~I~~~~i~ds~g~~~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
|++|++|+|+||+|+|||+|+|+|++|.+ ++.+|||+|+|.+||.+++|+++.+|.|+++.+++..+++.|+|.|+|+|
T Consensus 1 i~~i~~r~i~dsrg~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d 80 (425)
T TIGR01060 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMD 80 (425)
T ss_pred CcEEEEEEEecCCCCceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999987 89999999999999999999998899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.||++||+.|.+++++.+++++|.||++|||||+||++||.+|+|||+|||| ..+.++|+|++++++||.|+++++
T Consensus 81 ~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG---~~~~~lPvp~~n~i~GG~~a~~~~ 157 (425)
T TIGR01060 81 AFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGG---KNAYVLPVPMMNIINGGAHADNNL 157 (425)
T ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCC---CCCCceeeEEEEeecccccccCcc
Confidence 99999999999988899888889999999999999999999999999999998 345689999999999999999999
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-ce-
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-KW- 283 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~i- 283 (479)
++||||++|.++.+++++++++.++|+++|+.++.| |. .+++|++|+|.|+++++++.|+.++++++++|+.++ ++
T Consensus 158 ~~qe~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~-~~-~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~ 235 (425)
T TIGR01060 158 DFQEFMIMPVGAKSFREALRMGAEVFHALKKLLKEK-GL-ATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVA 235 (425)
T ss_pred CHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceE
Confidence 999999999999999999999999999999988877 64 577899999999988899999999999999888864 44
Q ss_pred --eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhh
Q 011677 284 --SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVV 357 (479)
Q Consensus 284 --iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~ 357 (479)
+|+|++ ||+.++++|++.. .++.+|++|+++++.+++++|+|.||||||+++|+++|++|++++ +||+
T Consensus 236 l~lD~aas~~~~~~~~~y~~~~------~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~ 309 (425)
T TIGR01060 236 LALDCAASEFYDEEDGKYVYKG------ENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIV 309 (425)
T ss_pred EEEEccccccccccCceeeecC------cccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEE
Confidence 999998 9976688999862 124589999999998888999999999999999999999999998 9999
Q ss_pred cCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 358 gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|||++++++++++++++.+++|++ +||++|+||||++++++++|+++|+.+|++|+++||+|++++|||||+++
T Consensus 310 gDE~~~t~~~~~~~~i~~~a~d~v------~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~ 383 (425)
T TIGR01060 310 GDDLFVTNTEILREGIEMGVANSI------LIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNA 383 (425)
T ss_pred eCCCcccCHHHHHHHHHhCCCCEE------EecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCc
Confidence 999988899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCchhHHHHhHHHHHHHHHhCCCccccC-ccccC
Q 011677 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG-EDYRQ 477 (479)
Q Consensus 438 ~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~-~~~~~ 477 (479)
+|+|+|+|+|+||++||||||||||+|++.+.|.| ..|+.
T Consensus 384 ~~ik~g~~~~~er~~kyn~ll~i~~~l~~~~~~~~~~~~~~ 424 (425)
T TIGR01060 384 GQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKNTFYR 424 (425)
T ss_pred CccccCCCchHHHHHHHHHHHHHHHHhcccceecchhccCC
Confidence 99999999999999999999999999999999999 46653
No 9
>PRK08350 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-81 Score=610.93 Aligned_cols=330 Identities=25% Similarity=0.336 Sum_probs=302.6
Q ss_pred CceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcC
Q 011677 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVG 123 (479)
Q Consensus 44 ~~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG 123 (479)
|++|++|.+|+|+||||+|||+|+|+|++|+.|+++|| |+++.+|. +++.+|++.+|+.|+|+|+|
T Consensus 1 M~~I~~i~aReIlDSRGnPTVEveV~~~~g~gra~vPS-------------D~d~~ry~-~gV~~AV~nVn~~Iap~LiG 66 (341)
T PRK08350 1 MTVIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPI-------------DENPSLYI-AEAHRAVSEVDEIIGPELIG 66 (341)
T ss_pred CceeEEEEEEEEEcCCCCceEEEEEEECCcEEEEEecC-------------CCCccccc-chHHHHHHHHHHHHHHHHcC
Confidence 55799999999999999999999999999955999998 33445788 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCC
Q 011677 124 MDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 124 ~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+|+.+|++||+.|.++|||+|++++|+||+.|||+|+++|+|+.+|+|||+|||| .....+|+|++|+||||
T Consensus 67 ~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg---~~~~~lPvP~~NiiNGG----- 138 (341)
T PRK08350 67 FDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGG---TFTTELPVPILEFAEDE----- 138 (341)
T ss_pred CCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcC---CCCCccCccceeeecCC-----
Confidence 9999999999999999999999999999999999999999999999999999987 23458999999999997
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCC-c
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSS-K 282 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~-~ 282 (479)
++ ||||+| .|+++ +.|+|+++|.+|+. +.+++|+++.+|++++||+|+ +
T Consensus 139 --~~-EFmI~p------~ea~~-~~ev~~~lk~il~~--------------------~~eeaL~ll~eAi~~aGy~~g~d 188 (341)
T PRK08350 139 --NF-EYYVLV------RDLME-ITDVVDAVNKILEN--------------------SKEVSLEGLSKASEKAGDELGLE 188 (341)
T ss_pred --ce-EEEECc------hHhhh-hHHHHHHHHHHHhh--------------------ChHHHHHHHHHHHHHhCCCcccc
Confidence 45 999998 68999 78999999998863 358999999999999999975 4
Q ss_pred e---eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh--hhhh
Q 011677 283 W---SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVV 357 (479)
Q Consensus 283 i---iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~ 357 (479)
+ +|+. ..+|++|++ +|+++|||.+|| ||+++ ++|++|+++. ++|+
T Consensus 189 v~~~lD~~-----------------------~~~t~~eli----~l~~kYPIvsIE-p~~E~--~gw~~lt~~g~~iqiV 238 (341)
T PRK08350 189 VALGIAQK-----------------------REMETEKVL----NLVEDNNIAYIK-PIGDE--ELFLELIAGTHGVFID 238 (341)
T ss_pred EEEeeccC-----------------------CCCCHHHHH----HHHHHCCEEEEE-cCCcc--hHHHHHHhcCCceEEE
Confidence 5 6661 135889998 789999999999 99966 9999999998 9999
Q ss_pred cCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 358 gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
|||+++||+.+ ++++||++ +||+||+||+||+++++++|+++||.+|+|||||||+|+|++|||||+++
T Consensus 239 GDDLfvTN~~~-----~~~~~Nai------LiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGETeD~~IAdLaVa~~a 307 (341)
T PRK08350 239 GEYLFRTRNIL-----DRRYYNAL------SIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRC 307 (341)
T ss_pred cccccccChhH-----hhCccceE------EEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCCCcchhHHHHHHHhCC
Confidence 99999999765 88999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCchhHHHHhHHHHHHHHHhCCCccc
Q 011677 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIY 470 (479)
Q Consensus 438 ~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~ 470 (479)
+||| +|+||++||||||||||+|+..+..
T Consensus 308 gqIK----~R~ER~aKyN~LlrIee~lg~~~~~ 336 (341)
T PRK08350 308 PAML----IHKDSVEKINELNRIAEDLGERGRI 336 (341)
T ss_pred Cccc----cchhHHHHHHHHHHHHHHcCCCeEE
Confidence 9999 8999999999999999999876543
No 10
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=100.00 E-value=2.7e-77 Score=588.55 Aligned_cols=287 Identities=55% Similarity=0.905 Sum_probs=253.4
Q ss_pred cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHH
Q 011677 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIRE 264 (479)
Q Consensus 185 ~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~ 264 (479)
..+|+|++|+||||+|+++++++|||||+|.++.+++|+++++.++|+++|++|+.|+|...+++||+|||+|+++++++
T Consensus 2 ~~lPvP~~nvinGG~ha~~~l~~QEfmI~P~ga~s~~eal~~~~eVy~~Lk~il~~k~G~~~t~vgDeGGfaP~~~~~ee 81 (295)
T PF00113_consen 2 YTLPVPMFNVINGGKHAGNKLDFQEFMIVPVGADSFSEALRMGAEVYHALKKILKKKGGKFATNVGDEGGFAPNIDDNEE 81 (295)
T ss_dssp EEE-EEEEEEEE-GGGSSSSCSSSEEEEEETT-SSHHHHHHHHHHHHHHHHHHHHHHH-GGGGSBETTSSB--SBSSHHH
T ss_pred cccCcceEEEEcCccCCCCcccceEEEEEeccCCCHHHHHHhhhHHHHHHHHHHhhcccccccccCcccccCCCCcchhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCce---eecccc-cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCc
Q 011677 265 GLDLVKEAINRTGIPSSKW---SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDK 340 (479)
Q Consensus 265 ~l~~v~~ai~~~g~~~~~i---iD~aa~-~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~ 340 (479)
+|++|.+|++++|+++ +| +||||| ||++++|+|+++++.+.+++++.+|++||+++|.+|+++|||.+|||||++
T Consensus 82 aL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YPIvsIEDpf~e 160 (295)
T PF00113_consen 82 ALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYPIVSIEDPFDE 160 (295)
T ss_dssp HHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-EEEEESSS-T
T ss_pred HHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHhcCeEEEEccccc
Confidence 9999999999999995 54 999999 999899999999877666666789999999999999999999999999999
Q ss_pred cCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 341 EDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 341 ~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+||++|++|++++ |+|+|||+++||++++++++++++||++ +||+||+||+||+++++++|+++||.+|+|
T Consensus 161 dD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~------llK~NQigTvte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 161 DDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNAL------LLKPNQIGTVTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp T-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEE------EE-HHHHSSHHHHHHHHHHHHHTT-EEEEE
T ss_pred cchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccch------hhhhhhhHHHHHHHHHHHHHHHCCceeecc
Confidence 9999999999999 9999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccccCC
Q 011677 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQC 478 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~~~ 478 (479)
|++|||+|+|++|||||++++|||+|+|+|+||++||||||||||+|++.++|+|++||+|
T Consensus 235 ~rsgEteD~~iadLaVg~~a~~iK~G~p~r~Er~aKyN~LLrIeeelg~~a~~~g~~~~~~ 295 (295)
T PF00113_consen 235 HRSGETEDTFIADLAVGLGAGQIKTGAPCRGERIAKYNRLLRIEEELGSKAKYAGKNFRKP 295 (295)
T ss_dssp --SS--S--HHHHHHHHTT-SEEEEESSSSHHHHHHHHHHHHHHHHHGGGSEE-GGGCTSC
T ss_pred CCCCCcCchhHHHHHhccCcCeEecccchhhHHHHHhhHHHHHHHHcCCCCEECChhhhCc
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 11
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=2.6e-40 Score=340.77 Aligned_cols=328 Identities=15% Similarity=0.178 Sum_probs=240.4
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCcccccc-------HHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNS-------VNRAVKNINERISEALVGMDPILQSQIDQ 134 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~-------~~~av~~i~~~l~p~LiG~d~~~~~~id~ 134 (479)
.+|.|+|+|++|.+ |||||.+ ..|.|++ ..++...|++.++|.|+|+|+.+.+++++
T Consensus 50 ~~vlV~i~tddG~~----------G~GE~~~------~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~ 113 (408)
T TIGR01502 50 ESLSVLLVLEDGQV----------VHGDCAA------VQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAE 113 (408)
T ss_pred cEEEEEEEECCCCE----------EEEEeec------ceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHH
Confidence 46999999999984 9999876 2566654 66777789889999999999999999999
Q ss_pred HHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeecc
Q 011677 135 AMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214 (479)
Q Consensus 135 ~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p 214 (479)
.|..... +.+ +...+++|||+||||+.||..|+|||++||+..+....+-++|++..++. ....+
T Consensus 114 ~~~~~~~--~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~-~~~~~----------- 178 (408)
T TIGR01502 114 VFEKMTV--NRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGD-DRYDN----------- 178 (408)
T ss_pred HHHHHhh--cCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeec-cCCCC-----------
Confidence 9987531 111 33567799999999999999999999999952211112345676765421 00000
Q ss_pred CCCCcHHHHHHHHHHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhc---CCCCCce-eecccc
Q 011677 215 IGASSFGEALQMGSET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRT---GIPSSKW-SDCKSS 289 (479)
Q Consensus 215 ~~~~~~~ea~~~~~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~---g~~~~~i-iD~aa~ 289 (479)
.+..+.++.+...++ |+.+| |+|.. ..++.+.++.+++.++++ |+. ..+ +|+|..
T Consensus 179 -~d~m~~~a~~~~~~G~~~~~K-----kvG~~-------------~~k~~~~~~~~~~ri~~lr~~g~~-~~l~vDaN~~ 238 (408)
T TIGR01502 179 -VDKMILKEVDVLPHGLINSVE-----ELGLD-------------GEKLLEYVKWLRDRIIKLGREGYA-PIFHIDVYGT 238 (408)
T ss_pred -HHHHHHHHHHHHhccCcccee-----eecCC-------------HHHhhhhHHHHHHHHHHhhccCCC-CeEEEEcCCC
Confidence 012334444444443 44444 23321 112334556666665443 333 356 998531
Q ss_pred cccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHh---hCCceeeecCCCccC----HHHHHHHHhh-----h-hhh
Q 011677 290 MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCA---DYPIVSIEDPFDKED----WEHTKSVLQI-----C-QQV 356 (479)
Q Consensus 290 ~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~---~~~i~~iEdP~~~~D----~~g~~~L~~~-----~-~~I 356 (479)
. | .-+.||++++++++.++-+ +|++ |||||++++| +++|++|+++ + +||
T Consensus 239 ~-----~------------~~~~~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 239 I-----G------------EAFGVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred c-----c------------cccCCCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 0 0 0136799999998877533 3787 9999999866 9999999988 6 999
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhh
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVG 434 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~ 434 (479)
++||+. +++++++++++.+++|++ |||++++||||++++++++|+++|++++++++.+||..+ +.+|||++
T Consensus 301 ~aDEs~-~t~~d~~~~i~~~a~d~v------~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa 373 (408)
T TIGR01502 301 VADEWC-NTVEDVKFFTDAKAGHMV------QIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMA 373 (408)
T ss_pred EecCCC-CCHHHHHHHHHhCCCCEE------EeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999974 569999999999999999 999999999999999999999999999998887788664 56799999
Q ss_pred cCCCCc--ccCCCCchhHHHHhHHHHHHHHHhC
Q 011677 435 LASGQI--KAGAPCRGERLAKYNQLLHIEEELG 465 (479)
Q Consensus 435 ~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l~ 465 (479)
+++.++ |||.-...-=+..+|++.|+...++
T Consensus 374 ~~~~~~l~kpg~g~d~~~~~~~ne~~r~~~~~~ 406 (408)
T TIGR01502 374 TGARQVLAKPGMGVDEGMMIVKNEMNRVLALVG 406 (408)
T ss_pred cCCCceEecCCCCcchhHHHHHHHHHHHHHHhh
Confidence 998887 8997544334899999999876553
No 12
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-39 Score=329.09 Aligned_cols=324 Identities=16% Similarity=0.167 Sum_probs=225.0
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccH----HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV----NRAVKNINERISEALVGMDPILQSQIDQAMI 137 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~----~~av~~i~~~l~p~LiG~d~~~~~~id~~l~ 137 (479)
..|.|+|+|++|++ ||||+.+..- +.+.+++. ..+...+++.++|.|+|+||.+.+++|+.|.
T Consensus 13 ~~vlV~I~tddG~~----------G~GEa~~~~~---~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~ 79 (369)
T cd03314 13 EAISVMLVLEDGQV----------AVGDCAAVQY---SGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLD 79 (369)
T ss_pred cEEEEEEEECCCCE----------EEEecccccc---cCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHH
Confidence 57899999999994 9999754200 00122222 3345578888999999999999999999997
Q ss_pred hhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCC
Q 011677 138 DLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGA 217 (479)
Q Consensus 138 ~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~ 217 (479)
+....+ +.....+++|||+||||+.||.+|+|||++|||..+..+.+.++|+|..+++. . .
T Consensus 80 ~~~~~g--~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~----~-------------~ 140 (369)
T cd03314 80 KMRLDG--NRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDD----R-------------Y 140 (369)
T ss_pred HHhhcC--CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCc----c-------------c
Confidence 632111 11234578999999999999999999999999521001234566667543211 0 0
Q ss_pred CcHHHHHHHHHHH-----HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccc
Q 011677 218 SSFGEALQMGSET-----YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMH 291 (479)
Q Consensus 218 ~~~~ea~~~~~e~-----~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~ 291 (479)
...++.++.+.+. |+.+| .| |....++- . .....++.++... .+|.+ ..+ +|+|.. |
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~k----~k-G~~~~K~~------~---~~~~~~~~v~avr-~~G~~-~~l~vDaN~~-w 203 (369)
T cd03314 141 INVDKMILKGADVLPHALINNVE----EK-GPKGEKLL------E---YVKWLSDRIRKLG-RPGYH-PILHIDVYGT-I 203 (369)
T ss_pred ccHHHHHHHHHhhhhhhhhhhHh----hc-CccHHHHH------H---hHHHHHHHHHHHh-hcCCC-CEEEEEcCCc-c
Confidence 1222222222211 33333 33 43221111 0 1122233443333 44655 456 998421 1
Q ss_pred cccCceeeccCCCCCCCCCCCC--CHHHHHHHHHHHHhhC-C--ceeeecCCCccC----HHHHHHHHhh-----h-hhh
Q 011677 292 NIYSTKYDLDFKSPNKSGQNFK--SGEDMIEMYKELCADY-P--IVSIEDPFDKED----WEHTKSVLQI-----C-QQV 356 (479)
Q Consensus 292 ~~~~g~Y~~~~~~~~~~~~~~~--t~~e~i~~~~~ll~~~-~--i~~iEdP~~~~D----~~g~~~L~~~-----~-~~I 356 (479)
.|.| |.++++++... ++++ + +.||||||+++| +++|++|+++ + +||
T Consensus 204 ------------------~~~~~~~~~~A~~~~~~-Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPI 264 (369)
T cd03314 204 ------------------GQAFDPDPDRAADYLAT-LEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRI 264 (369)
T ss_pred ------------------ccccCCCHHHHHHHHHH-HHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 1457 89999988765 5654 4 789999999865 8999999988 6 999
Q ss_pred hcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhh
Q 011677 357 VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVG 434 (479)
Q Consensus 357 ~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~ 434 (479)
++||+.. ++++++++++.+++|++ ++|++++||||++++++++|+++|++++++|+++|+..+ +.+|++.+
T Consensus 265 a~dEs~~-t~~d~~~li~~~a~div------~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~aa~lHlaaa 337 (369)
T cd03314 265 VADEWCN-TLEDIRDFADAGAAHMV------QIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISARVTVHVALA 337 (369)
T ss_pred EecCCcC-CHHHHHHHHHhCCCCEE------EecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHHHHHHHHHh
Confidence 9999865 59999999999999999 999999999999999999999999999888777788765 66799999
Q ss_pred cCCCCc--ccCCCCchhHHHHhHHHHHH
Q 011677 435 LASGQI--KAGAPCRGERLAKYNQLLHI 460 (479)
Q Consensus 435 ~~~~~i--k~G~~~~~er~~kyn~ll~i 460 (479)
+++.|+ |+|.-...--+..-|++-|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (369)
T cd03314 338 TRADQMLAKPGMGVDEGLMIVTNEMNRT 365 (369)
T ss_pred cCCcceeeCCCCCccchHHHHHHHHHHH
Confidence 999887 78877666666677776654
No 13
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.1e-40 Score=336.13 Aligned_cols=291 Identities=19% Similarity=0.204 Sum_probs=215.6
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+++.. .+.|+|+|++|+ +|+||+.. . ..++..+++.++|.|+|+|
T Consensus 1 kI~~i~~~~~-------~v~V~i~td~Gi----------~G~GE~~~----------~---~~~~~~i~~~l~p~liG~d 50 (341)
T cd03327 1 KIKSVRTRVG-------WLFVEIETDDGT----------VGYANTTG----------G---PVACWIVDQHLARFLIGKD 50 (341)
T ss_pred CeEEEEEEEE-------EEEEEEEECCCC----------eEEecCCC----------c---hHHHHHHHHHHHHHhCCCC
Confidence 5889988542 588999999999 49999631 1 1234457788999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++++|+.|.+.......+++...|++|||+||||+.||.+|+|||+|||| ..+.++| +|...+ + ..
T Consensus 51 p~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG---~~r~~i~--~y~~~~-~--~~--- 119 (341)
T cd03327 51 PSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGG---RTRDKIP--AYASGL-Y--PT--- 119 (341)
T ss_pred chHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCC---CcCCceE--EEEECC-C--CC---
Confidence 99999999999764322223445567999999999999999999999999998 3344555 454321 1 10
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-e
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-S 284 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-i 284 (479)
+. ....+++.+...++|+++| .|.|.. . ..+ ..+.+.+.+.++.||+++ |.+ .++ +
T Consensus 120 ~~---------~~~~~~a~~~~~~Gf~~~K----ikvg~~---~-~~~--~~~~~~d~~~v~avr~~~---g~~-~~l~v 176 (341)
T cd03327 120 DL---------DELPDEAKEYLKEGYRGMK----MRFGYG---P-SDG--HAGLRKNVELVRAIREAV---GYD-VDLML 176 (341)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ECCCCC---C-Ccc--hHHHHHHHHHHHHHHHHh---CCC-CcEEE
Confidence 11 1234556556666777766 343310 0 000 011233455566666555 654 456 9
Q ss_pred ecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccc
Q 011677 285 DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363 (479)
Q Consensus 285 D~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~ 363 (479)
|+| +.||.++++++. +.+++|++.|||||++++|+++|++|++++ +||++||+..
T Consensus 177 Dan-----------------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~~~ 232 (341)
T cd03327 177 DCY-----------------------MSWNLNYAIKMA-RALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEHEY 232 (341)
T ss_pred ECC-----------------------CCCCHHHHHHHH-HHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccCcc
Confidence 984 357889999875 457999999999999999999999999999 9999999865
Q ss_pred cCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 364 t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
++++++++++.+++|++ |+|++++||||++++++++|+++|+++ ++|.+ ..+.+|++.++.
T Consensus 233 -~~~~~~~~i~~~a~d~i------~~d~~~~GGit~~~~i~~~A~~~g~~~-~~h~~----~~a~~hlaaa~~ 293 (341)
T cd03327 233 -TVYGFKRLLEGRAVDIL------QPDVNWVGGITELKKIAALAEAYGVPV-VPHAS----QIYNYHFIMSEP 293 (341)
T ss_pred -CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCee-ccccH----HHHHHHHHHhCc
Confidence 49999999999999999 999999999999999999999999996 56753 346678877764
No 14
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1.2e-39 Score=339.52 Aligned_cols=308 Identities=15% Similarity=0.165 Sum_probs=220.3
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|+...+ ..+++.+.|+|+|++|+ +||||+.. .+.+ ..+...+.+.++|.|+|+
T Consensus 1 mkI~~v~~~~~--~~~~~~vlVri~td~G~----------~G~GE~~~---------~~~~-~~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT--CPGRNFVTLKITTDDGV----------TGLGDATL---------NGRE-LAVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE--CCCCcEEEEEEEeCCCC----------eEEEeccc---------CCch-HHHHHHHHHHHHHHcCCC
Confidence 68999999876 23456899999999999 49999742 1222 234456778899999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNN 204 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~ 204 (479)
||.+.+++|+.|.+.. ....+.+...|++|||+||||+.||.+|+|||+|||| ..+.+ +|+|++..+.
T Consensus 59 d~~~~e~~~~~l~~~~-~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG---~~r~~--v~~y~~~~~~------ 126 (404)
T PRK15072 59 DAHRIEDIWQYLYRGA-YWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGG---ASREG--VMVYGHANGR------ 126 (404)
T ss_pred ChhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCC---CccCc--eEEEEeCCCC------
Confidence 9999999999997521 1122334467999999999999999999999999998 32344 5556542221
Q ss_pred ccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCc---c-cCCCCC--CCCCC----------------Cch
Q 011677 205 LAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGC---N-VGEDGG--LAPNI----------------SSI 262 (479)
Q Consensus 205 l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~---~-vg~~G~--~~~~~----------------~~~ 262 (479)
+.+ ...+++.+...++|+++| .|.|.... . ...+.+ +.+.. +.+
T Consensus 127 -~~~---------~~~~~a~~~~~~Gf~~~K----iKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 192 (404)
T PRK15072 127 -DID---------ELLDDVARHLELGYKAIR----VQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFV 192 (404)
T ss_pred -CHH---------HHHHHHHHHHHcCCCEEE----EecCCCCcccccccccccccccccccccccccccccccHHHHHHH
Confidence 111 123455555566777776 45442100 0 000000 01110 111
Q ss_pred HHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCcc
Q 011677 263 REGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~ 341 (479)
.+.+++||+++ |.+ .++ +|+| +.||.++++++.+ .+++|++.|||||++++
T Consensus 193 ~~~v~avre~~---G~~-~~l~vDaN-----------------------~~w~~~~A~~~~~-~l~~~~l~~iEeP~~~~ 244 (404)
T PRK15072 193 PKLFEAVRNKF---GFD-LHLLHDVH-----------------------HRLTPIEAARLGK-SLEPYRLFWLEDPTPAE 244 (404)
T ss_pred HHHHHHHHhhh---CCC-ceEEEECC-----------------------CCCCHHHHHHHHH-hccccCCcEEECCCCcc
Confidence 34555565555 644 456 9984 3678999998765 47999999999999999
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
|++++++|++++ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|+++++++++
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~-~~~~~~~li~~~a~dii------~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFN-SIWDCKQLIEEQLIDYI------RTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCcc-CHHHHHHHHHcCCCCEE------ecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 999999999999 9999999865 59999999999999999 999999999999999999999999998653333
Q ss_pred CCCch--hHHHHhHhhc
Q 011677 421 GETED--SFIADLSVGL 435 (479)
Q Consensus 421 get~d--~~~~dlAv~~ 435 (479)
.++.. ++.+|||.++
T Consensus 318 ~~s~l~~aa~~hlaaa~ 334 (404)
T PRK15072 318 DLSPVCMAAALHFDLWV 334 (404)
T ss_pred ccchHHHHHHHHHHHhc
Confidence 34544 3456666654
No 15
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.8e-38 Score=325.86 Aligned_cols=294 Identities=20% Similarity=0.199 Sum_probs=221.1
Q ss_pred ceeeEEEEEEEecC--------C----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHH
Q 011677 45 SVITKIKARQILDS--------R----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKN 112 (479)
Q Consensus 45 ~~I~~I~~~~i~ds--------~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~ 112 (479)
|+|++|+++.+.-. . ....|.|+|+|++|+ +|+||+. .|.+++...+...
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~----------~G~Ge~~--------~~~~~~~~~~~~~ 62 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGV----------TGHSYLF--------TYTPAALKSLKQL 62 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCC----------eEEEeee--------cCCCCcHHHHHHH
Confidence 58999998887411 1 235689999999999 4999853 2455555555444
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceE
Q 011677 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAF 192 (479)
Q Consensus 113 i~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~ 192 (479)
+ +.++|.|+|+++ +.+++++.+.+.......+++...|++|||+||||+.||.+|+|||++||| . +. ++|+|
T Consensus 63 ~-~~l~p~LiG~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg---~-~~--~v~~y 134 (355)
T cd03321 63 L-DDMAALLVGEPL-APAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGG---N-PR--PVQAY 134 (355)
T ss_pred H-HHHHHHhCCCCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC---C-CC--CeeEE
Confidence 4 469999999986 678888877653211112334467999999999999999999999999998 3 23 45556
Q ss_pred EeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHH
Q 011677 193 TVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEA 272 (479)
Q Consensus 193 ~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~a 272 (479)
.+++.+ + .+...+++.+...++|+.+|. |.|. ++.+.+.+.++.+|++
T Consensus 135 ~s~~~~-------~---------~~~~~~~a~~~~~~Gf~~~Ki----Kvg~------------~~~~~d~~~v~air~~ 182 (355)
T cd03321 135 DSHGLD-------G---------AKLATERAVTAAEEGFHAVKT----KIGY------------PTADEDLAVVRSIRQA 182 (355)
T ss_pred EeCCCC-------h---------HHHHHHHHHHHHHhhhHHHhh----hcCC------------CChHhHHHHHHHHHHh
Confidence 543211 1 123456777777788988883 5331 1223445666666665
Q ss_pred HHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHh
Q 011677 273 INRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQ 351 (479)
Q Consensus 273 i~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~ 351 (479)
+ |.+ ..+ +|+| +.||.++++++.++ +++|++.|||||++++|+++|++|++
T Consensus 183 ~---g~~-~~l~vDaN-----------------------~~~~~~~A~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 183 V---GDG-VGLMVDYN-----------------------QSLTVPEAIERGQA-LDQEGLTWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred h---CCC-CEEEEeCC-----------------------CCcCHHHHHHHHHH-HHcCCCCEEECCCCCcCHHHHHHHHH
Confidence 5 644 456 8883 36788999988655 68999999999999999999999999
Q ss_pred hh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHH
Q 011677 352 IC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIAD 430 (479)
Q Consensus 352 ~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~d 430 (479)
++ +||++||.+. ++++++++++.+++|++ |+|++++||+|++++++++|+++|+++ ++|..+ +..+|
T Consensus 235 ~~~ipia~~E~~~-~~~~~~~~i~~~~~d~i------~~~~~~~GGit~~~~ia~~A~~~gi~~-~~h~~~----~~~~h 302 (355)
T cd03321 235 ALRTPVQMGENWL-GPEEMFKALSAGACDLV------MPDLMKIGGVTGWLRASALAEQAGIPM-SSHLFQ----EISAH 302 (355)
T ss_pred hcCCCEEEcCCCc-CHHHHHHHHHhCCCCeE------ecCHhhhCCHHHHHHHHHHHHHcCCee-cccchH----HHHHH
Confidence 99 9999999764 59999999999999999 999999999999999999999999996 567643 34678
Q ss_pred hHhhcC
Q 011677 431 LSVGLA 436 (479)
Q Consensus 431 lAv~~~ 436 (479)
++.++.
T Consensus 303 ~~aa~~ 308 (355)
T cd03321 303 LLAVTP 308 (355)
T ss_pred HHHhCC
Confidence 887754
No 16
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.2e-39 Score=329.84 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=212.2
Q ss_pred eeeEEEEEEEecCC------------CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQILDSR------------GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~ds~------------g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|+++.+.-.. ....|.|+|+| +|+ +|+||+. .+ ......+
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~----------~G~Ge~~----------~~---~~~~~~i 56 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGR----------TGLGYTY----------AD---AAAAALV 56 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCc----------EEEeCCC----------Ch---HHHHHHH
Confidence 47777776653111 23457899997 698 4999742 22 2334457
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEE
Q 011677 114 NERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFT 193 (479)
Q Consensus 114 ~~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~ 193 (479)
++.++|.|+|+||.+.++||+.|.+.......++....|++|||+||||+.||.+|+|||+|||| . +.++|+ |.
T Consensus 57 ~~~~~p~liG~d~~~~~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg---~-~~~v~~--y~ 130 (352)
T cd03328 57 DGLLAPVVEGRDALDPPAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGR---A-HDSVPV--YG 130 (352)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcC---C-CCCeEE--EE
Confidence 77899999999999999999999763211122344457999999999999999999999999997 2 345554 54
Q ss_pred eecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHH
Q 011677 194 VISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAI 273 (479)
Q Consensus 194 ~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai 273 (479)
. ++... .+ .+...+++.+...++|+++| .|.| . +.+.+.+.++.+|+++
T Consensus 131 s--~~~~~---~~---------~e~~~~~a~~~~~~Gf~~~K----ikvg-------~------~~~~d~~~v~~vRe~~ 179 (352)
T cd03328 131 S--GGFTS---YD---------DDRLREQLSGWVAQGIPRVK----MKIG-------R------DPRRDPDRVAAARRAI 179 (352)
T ss_pred e--cCCCC---CC---------HHHHHHHHHHHHHCCCCEEE----eecC-------C------CHHHHHHHHHHHHHHc
Confidence 3 22110 01 11234555555556676666 3422 1 1123455566665555
Q ss_pred HhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhh
Q 011677 274 NRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQI 352 (479)
Q Consensus 274 ~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~ 352 (479)
|.+ .++ +|+| +.||.++++++.+ .+++|++.|||||++++|++++++|+++
T Consensus 180 ---G~~-~~l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~~~~~EeP~~~~d~~~~~~l~~~ 231 (352)
T cd03328 180 ---GPD-AELFVDAN-----------------------GAYSRKQALALAR-AFADEGVTWFEEPVSSDDLAGLRLVRER 231 (352)
T ss_pred ---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHHHhCcchhhCCCChhhHHHHHHHHhh
Confidence 644 456 9983 3678999998764 5799999999999999999999999999
Q ss_pred --h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q 011677 353 --C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIA 429 (479)
Q Consensus 353 --~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~ 429 (479)
+ +||++||+.. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++ +|.. .+..+
T Consensus 232 ~~~~iPIa~gE~~~-~~~~~~~li~~~a~div------~~d~~~~GGit~~~~ia~~A~a~gi~~~-~h~~----~~a~~ 299 (352)
T cd03328 232 GPAGMDIAAGEYAY-TLAYFRRLLEAHAVDVL------QADVTRCGGVTGFLQAAALAAAHHVDLS-AHCA----PALHA 299 (352)
T ss_pred CCCCCCEEeccccc-CHHHHHHHHHcCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeec-cCch----HHHHH
Confidence 8 9999999765 59999999999999999 9999999999999999999999999975 4642 35667
Q ss_pred HhHhhcC
Q 011677 430 DLSVGLA 436 (479)
Q Consensus 430 dlAv~~~ 436 (479)
|++.++.
T Consensus 300 hl~aa~~ 306 (352)
T cd03328 300 HVACAVP 306 (352)
T ss_pred HHHHhCC
Confidence 8887764
No 17
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=1.4e-38 Score=327.23 Aligned_cols=286 Identities=18% Similarity=0.188 Sum_probs=212.0
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+.... +.+++.+.|+|+|++|+ +|+||+.. .+. .......+++.++|.|+|+|
T Consensus 1 kI~~ie~~~~--~~~~~~vlV~v~td~G~----------~G~GE~~~---------~~~-~~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT--CPGRNFVTLKITTDQGV----------TGLGDATL---------NGR-ELAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE--CCCCCEEEEEEEeCCCC----------eEEEeccc---------CCC-HHHHHHHHHHHHHHHcCCCC
Confidence 5899999544 33456799999999998 49999742 111 22344567788999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++.+|+.|.... ....+.....|++|||+||||+.||.+|+|||+|||| ..+.++|+ |++..+.
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg---~~r~~v~~--ya~~~~~------- 125 (361)
T cd03322 59 ANRIEDIWQYLYRGA-YWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGG---KSRDGIMV--YSHASGR------- 125 (361)
T ss_pred hhHHHHHHHHHHHhc-ccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCC---CccCeeeE--EEeCCCC-------
Confidence 999999999986521 1111223456999999999999999999999999998 33445444 5432110
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-e
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-S 284 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-i 284 (479)
+. ....+++.+...++|+.+|. | ..+.++.+|+++ |.+ ..+ +
T Consensus 126 ~~---------~~~~~~a~~~~~~Gf~~~Ki----K--------------------v~~~v~avre~~---G~~-~~l~v 168 (361)
T cd03322 126 DI---------PELLEAVERHLAQGYRAIRV----Q--------------------LPKLFEAVREKF---GFE-FHLLH 168 (361)
T ss_pred CH---------HHHHHHHHHHHHcCCCeEee----C--------------------HHHHHHHHHhcc---CCC-ceEEE
Confidence 11 11234444444455555552 2 134566666555 644 456 9
Q ss_pred ecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccc
Q 011677 285 DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363 (479)
Q Consensus 285 D~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~ 363 (479)
|+| +.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+.
T Consensus 169 DaN-----------------------~~w~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~- 223 (361)
T cd03322 169 DVH-----------------------HRLTPNQAARFGK-DVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVF- 223 (361)
T ss_pred ECC-----------------------CCCCHHHHHHHHH-HhhhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCC-
Confidence 983 3678999998765 47999999999999999999999999999 999999976
Q ss_pred cCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC-CCchh--HHHHhHhhc
Q 011677 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETEDS--FIADLSVGL 435 (479)
Q Consensus 364 t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g-et~d~--~~~dlAv~~ 435 (479)
.+++++++++..+++|++ |+|++++||||++++++++|+++|+++++ |... ++..+ ..+||+.++
T Consensus 224 ~~~~~~~~~i~~~a~di~------~~d~~~~GGit~~~~ia~~A~~~gi~~~~-h~~~~~s~i~~aa~~~laa~~ 291 (361)
T cd03322 224 NSIWDWQNLIQERLIDYI------RTTVSHAGGITPARKIADLASLYGVRTGW-HGPTDLSPVGMAAALHLDLWV 291 (361)
T ss_pred cCHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeeec-cCCCCcchHHHHHHHHHHhhc
Confidence 459999999999999999 99999999999999999999999999865 5443 45443 455665554
No 18
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=2.8e-38 Score=327.38 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=212.9
Q ss_pred ceeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 45 ~~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
|+|++|+++.+ .. .++.|+|+|++|++ |+||+.. .+ ........+ +.++|.|+|+
T Consensus 1 mkI~~i~~~~~-~~---~~vlV~v~t~dG~~----------G~GE~~~---------~~-~~~~~~~~~-~~~~p~l~G~ 55 (382)
T PRK14017 1 MKITKLETFRV-PP---RWLFLKIETDEGIV----------GWGEPVV---------EG-RARTVEAAV-HELADYLIGK 55 (382)
T ss_pred CeEEEEEEEEE-CC---CEEEEEEEECCCCe----------EEecccc---------CC-chHHHHHHH-HHHHHHhCCC
Confidence 68999999887 21 35889999999984 9999643 11 122233334 4699999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCc
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNN 204 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~ 204 (479)
||.+.+++++.|..... ...+.....|++|||+||||+.||.+|+|||++||| ..+.++ |+|..++++
T Consensus 56 d~~~~~~~~~~l~~~~~-~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg---~~r~~i--~~~~~~~~~------ 123 (382)
T PRK14017 56 DPRRIEDHWQVMYRGGF-YRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGG---LVRDRI--RVYSWIGGD------ 123 (382)
T ss_pred CHHHHHHHHHHHHHhcc-cCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCC---Ccccee--eEeEeCCCC------
Confidence 99999999999864210 111122356999999999999999999999999998 323444 445443211
Q ss_pred ccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-
Q 011677 205 LAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW- 283 (479)
Q Consensus 205 l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i- 283 (479)
+. +...+++.+...++|+.+| .|.|.. .+..++ ..+.+.+.+.++++|+++ |.+ .++
T Consensus 124 -~~---------~~~~~~a~~~~~~Gf~~~K----iKv~~~---~~~~~~-~~~~~~d~~~i~avr~~~---g~~-~~l~ 181 (382)
T PRK14017 124 -RP---------ADVAEAARARVERGFTAVK----MNGTEE---LQYIDS-PRKVDAAVARVAAVREAV---GPE-IGIG 181 (382)
T ss_pred -CH---------HHHHHHHHHHHHcCCCEEE----EcCcCC---cccccc-HHHHHHHHHHHHHHHHHh---CCC-CeEE
Confidence 11 1233455555555666665 342210 000000 001123455555555555 644 456
Q ss_pred eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCcc
Q 011677 284 SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLL 362 (479)
Q Consensus 284 iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~ 362 (479)
+|+| +.||.++++++.+ .++++++.|||||++++|++++++|++++ +||++||+.
T Consensus 182 vDaN-----------------------~~w~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~ 237 (382)
T PRK14017 182 VDFH-----------------------GRVHKPMAKVLAK-ELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERL 237 (382)
T ss_pred EECC-----------------------CCCCHHHHHHHHH-hhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCcc
Confidence 9983 3678899998764 57899999999999999999999999999 999999986
Q ss_pred ccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 363 MSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 363 ~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
. ++++++++++.+++|++ |+|++++||||++++++++|+++|++++++++.+....++.+||+.++.
T Consensus 238 ~-~~~~~~~li~~~a~d~v------~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~i~~aa~~hl~aa~~ 304 (382)
T PRK14017 238 F-SRWDFKRVLEAGGVDII------QPDLSHAGGITECRKIAAMAEAYDVALAPHCPLGPIALAACLQVDAVSP 304 (382)
T ss_pred C-CHHHHHHHHHcCCCCeE------ecCccccCCHHHHHHHHHHHHHcCCeEeecCCCCHHHHHHHHHHHHhCc
Confidence 4 59999999999999999 9999999999999999999999999976644432123345666766653
No 19
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-38 Score=323.13 Aligned_cols=296 Identities=16% Similarity=0.136 Sum_probs=211.7
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMD 125 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d 125 (479)
+|++|+.+.+ + .+.+.|+|+|++|++ ||||+... +. .......+++ ++|.|+|+|
T Consensus 1 ~I~~i~~~~~-~---~~~~~V~i~~~~G~~----------G~GE~~~~---------~~-~~~~~~~~~~-l~p~l~G~d 55 (352)
T cd03325 1 KITKIETFVV-P---PRWLFVKIETDEGVV----------GWGEPTVE---------GK-ARTVEAAVQE-LEDYLIGKD 55 (352)
T ss_pred CeEEEEEEEE-C---CCEEEEEEEECCCCE----------EEeccccC---------Cc-chHHHHHHHH-HHHHhCCCC
Confidence 4888988776 2 357899999999994 99997531 11 1233334555 999999999
Q ss_pred CCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcc
Q 011677 126 PILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNL 205 (479)
Q Consensus 126 ~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l 205 (479)
|.+++++++.|.... ....+....+|++|||+||||+.||..|+|||++||| ..+.++|+ |..++++
T Consensus 56 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg---~~~~~i~~--~~~~~~~------- 122 (352)
T cd03325 56 PMNIEHHWQVMYRGG-FYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGG---QVRDRVRV--YSWIGGD------- 122 (352)
T ss_pred HHHHHHHHHHHHHhc-CcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCC---CccceeEE--EEeCCCC-------
Confidence 999999999986421 1111222356999999999999999999999999998 32345444 5433211
Q ss_pred cccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCC---CCCchHHHHHHHHHHHHhcCCCCCc
Q 011677 206 AIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAP---NISSIREGLDLVKEAINRTGIPSSK 282 (479)
Q Consensus 206 ~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~---~~~~~~~~l~~v~~ai~~~g~~~~~ 282 (479)
+. ....+++.+...++|+.+| .|.|. ..++.+ +.+.+.+.++.+|+++ |.+ .+
T Consensus 123 ~~---------~~~~~~~~~~~~~Gf~~~K----iKvg~-------~~~~~~~~~~~~~D~~~i~avr~~~---g~~-~~ 178 (352)
T cd03325 123 RP---------SDVAEAARARREAGFTAVK----MNATE-------ELQWIDTSKKVDAAVERVAALREAV---GPD-ID 178 (352)
T ss_pred CH---------HHHHHHHHHHHHcCCCEEE----ecCCC-------CcccCCCHHHHHHHHHHHHHHHHhh---CCC-CE
Confidence 11 1123344444445566655 45431 111111 1223344455555444 644 45
Q ss_pred e-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCC
Q 011677 283 W-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDD 360 (479)
Q Consensus 283 i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde 360 (479)
+ +|+| +.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||
T Consensus 179 l~vDaN-----------------------~~~~~~~A~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dE 234 (352)
T cd03325 179 IGVDFH-----------------------GRVSKPMAKDLAK-ELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGE 234 (352)
T ss_pred EEEECC-----------------------CCCCHHHHHHHHH-hccccCCcEEECCCCccCHHHHHHHHHhCCCCEEecc
Confidence 6 9984 3578899998764 57999999999999999999999999999 9999999
Q ss_pred ccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 361 LLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 361 ~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+.. ++++++++++.+++|++ |+|++++||+|++++++++|+++|++++ +|.. ++.. .+.+||+.++.
T Consensus 235 s~~-~~~~~~~~~~~~~~d~v------~~d~~~~GGit~~~~~~~lA~~~gi~~~-~h~~-~s~i~~~a~~hlaa~~~ 303 (352)
T cd03325 235 RLF-SRWDFKELLEDGAVDII------QPDISHAGGITELKKIAAMAEAYDVALA-PHCP-LGPIALAASLHVDASTP 303 (352)
T ss_pred ccc-CHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCcEe-ccCC-CChHHHHHHHHHHHhcc
Confidence 764 59999999999999999 9999999999999999999999999986 5654 5544 46666666653
No 20
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6e-38 Score=323.24 Aligned_cols=284 Identities=19% Similarity=0.162 Sum_probs=212.5
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.++.. +.|.+++....+..+++.++|.|+|+|+.+.+++++.|....
T Consensus 28 ~~~~~V~v~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~l~~~~~~~l~G~~~~~~~~~~~~l~~~~ 94 (365)
T cd03318 28 QSLVLVRLTTSDGV----------VGIGEATTPGG---PAWGGESPETIKAIIDRYLAPLLIGRDATNIGAAMALLDRAV 94 (365)
T ss_pred cceEEEEEEECCCC----------eEEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChHHHHHHHHHHHHHh
Confidence 45688999999998 49999876421 235566666667778888999999999999999998887531
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
. + ...|++|||+||||+.||..|+|+|++||| ..+.++|+ |..++.+. . ....
T Consensus 95 -~---~--~~~a~said~AlwDl~gK~~g~Pl~~LLGg---~~~~~v~~--~~~~~~~~-------~---------~~~~ 147 (365)
T cd03318 95 -A---G--NLFAKAAIEMALLDAQGRRLGLPVSELLGG---RVRDSLPV--AWTLASGD-------T---------ERDI 147 (365)
T ss_pred -c---C--CccHHHHHHHHHHHHHHhHcCCCHHHHcCC---CcCCceEE--EEEEeCCC-------H---------HHHH
Confidence 1 1 134899999999999999999999999998 33345544 54332210 0 1123
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 221 GEALQMGSET-YHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 221 ~ea~~~~~e~-~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
+++.+...++ |+++| .|.| . .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 148 ~~~~~~~~~G~f~~~K----iKvg-------~-----~~~~~d~~~v~avr~~~---g~~-~~l~iDaN----------- 196 (365)
T cd03318 148 AEAEEMLEAGRHRRFK----LKMG-------A-----RPPADDLAHVEAIAKAL---GDR-ASVRVDVN----------- 196 (365)
T ss_pred HHHHHHHhCCCceEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---CCC-cEEEEECC-----------
Confidence 4444444555 65555 3433 1 11223445555555544 644 456 9984
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCC
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.++
T Consensus 197 ------------~~~~~~~A~~~~-~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~-~~~~~~~~~i~~~~ 262 (365)
T cd03318 197 ------------QAWDESTAIRAL-PRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADESV-SGPADAFELARRGA 262 (365)
T ss_pred ------------CCCCHHHHHHHH-HHHHhcCcceeeCCCCcccHHHHHHHHhhcCCCEEcCccc-CCHHHHHHHHHhCC
Confidence 357889999876 457999999999999999999999999999 999999975 45999999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+|++ |+|++++||||++++++++|+++|++++++|+. |+.. ++.+|+|.++.
T Consensus 263 ~d~~------~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~-~s~i~~aa~~hlaaa~~ 316 (365)
T cd03318 263 ADVF------SLKIAKSGGLRRAQKVAAIAEAAGIALYGGTML-ESSIGTAASAHLFATLP 316 (365)
T ss_pred CCeE------EEeecccCCHHHHHHHHHHHHHcCCceeecCcc-hhHHHHHHHHHHHHhCC
Confidence 9999 999999999999999999999999998876554 6544 45567766653
No 21
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=1.2e-37 Score=321.18 Aligned_cols=284 Identities=18% Similarity=0.139 Sum_probs=209.8
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
.+.+.|+|+|++|+ +|+||+.++.. +.|.+++...+...+++.++|.|+|+|+.+.+++++.|....
T Consensus 27 ~~~~~V~v~t~~G~----------~G~Ge~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 93 (368)
T TIGR02534 27 QTLVLVRIRTEDGV----------IGYGEGTTIGG---LWWGGESPETIKANIDTYLAPVLVGRDATEIAAIMADLEKVV 93 (368)
T ss_pred ccEEEEEEEECCCC----------eEEEecCCCCC---CccCCCCHHHHHHHHHHhhHHHHcCCChhhHHHHHHHHHHHh
Confidence 46789999999998 49999865321 346677777667778888999999999999998888876532
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
.. ...|++|||+||||+.||..|+|+|++||| ..+.++|+ |.+++.+ +.. ..+
T Consensus 94 -~~-----~~~a~said~AlwDl~gK~~g~Pv~~LLGg---~~r~~v~~--~~~~~~~-------~~~---------~~~ 146 (368)
T TIGR02534 94 -AG-----NRFAKAAVDTALHDAQARRLGVPVSELLGG---RVRDSVDV--TWTLASG-------DTD---------RDI 146 (368)
T ss_pred -cC-----CchHHHHHHHHHHHHHHHHcCCcHHHHhCC---CCCCceEE--EEEEeCC-------CHH---------HHH
Confidence 11 124899999999999999999999999998 33345554 4333221 000 112
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 221 GEALQMG-SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 221 ~ea~~~~-~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
+++.+.. .++|+++| .|.| . .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 147 ~~~~~~~~~~Gf~~~K----iKvg-------~-----~~~~~d~~~v~~~re~~---g~~-~~l~~DaN----------- 195 (368)
T TIGR02534 147 AEAEERIEEKRHRSFK----LKIG-------A-----RDPADDVAHVVAIAKAL---GDR-ASVRVDVN----------- 195 (368)
T ss_pred HHHHHHHHhcCcceEE----EEeC-------C-----CCcHHHHHHHHHHHHhc---CCC-cEEEEECC-----------
Confidence 2333222 23555554 4433 1 11233455565555555 644 456 9983
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCC
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+. .+++++++++..++
T Consensus 196 ------------~~~~~~~A~~~~~-~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~-~~~~~~~~~~~~~~ 261 (368)
T TIGR02534 196 ------------AAWDERTALHYLP-QLADAGVELIEQPTPAENREALARLTRRFNVPIMADESV-TGPADALAIAKASA 261 (368)
T ss_pred ------------CCCCHHHHHHHHH-HHHhcChhheECCCCcccHHHHHHHHHhCCCCEEeCccc-CCHHHHHHHHHhCC
Confidence 3678899998764 57999999999999999999999999999 999999975 56999999999999
Q ss_pred CceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+|++ |+|++++||||++++++++|+++|++++++++. ++.. ++.+|++.++.
T Consensus 262 ~d~~------~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~-~s~i~~aa~~h~~a~~~ 315 (368)
T TIGR02534 262 ADVF------ALKTTKSGGLLESKKIAAIAEAAGIALYGGTML-EGPIGTIASAHFFATFP 315 (368)
T ss_pred CCEE------EEcccccCCHHHHHHHHHHHHHcCCceeeecch-hhHHHHHHHHHHHHhCC
Confidence 9999 999999999999999999999999998766443 5545 44566666543
No 22
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.1e-38 Score=321.03 Aligned_cols=287 Identities=15% Similarity=0.163 Sum_probs=216.1
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.+.+- +.|.+++...+...+++.+.|.|+|+++.+++++++.|..+.
T Consensus 24 ~~~~~Vrv~t~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~~~~~~~~~~~ 90 (354)
T cd03317 24 REFLIVELTDEEGI----------TGYGEVVAFEG---PFYTEETNATAWHILKDYLLPLLLGREFSHPEEVSERLAPIK 90 (354)
T ss_pred eeEEEEEEEECCCC----------eEEEecCCCCC---CcccCCCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 35688999999999 49999875421 346677777778888888999999999999999999887632
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ...|++|||+||||+.||.+|+|+|++||| . +.++|+ |.+++.+ +. .+...
T Consensus 91 ~-------~~~a~aaid~AlwDl~gk~~g~Pv~~LLGg---~-~~~v~~--~~s~~~~-------~~--------~~~~~ 142 (354)
T cd03317 91 G-------NNMAKAGLEMAVWDLYAKAQGQSLAQYLGG---T-RDSIPV--GVSIGIQ-------DD--------VEQLL 142 (354)
T ss_pred C-------ChHHHHHHHHHHHHHHHHHcCCCHHHHhCC---C-CCeEEe--eEEEeCC-------Cc--------HHHHH
Confidence 1 135999999999999999999999999998 2 344444 5443211 00 01234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.||+++ | + .++ +|+|
T Consensus 143 ~~~~~~~~~Gf~~~K----iKv~-------------~--~~d~~~l~~vr~~~---g-~-~~l~lDaN------------ 186 (354)
T cd03317 143 KQIERYLEEGYKRIK----LKIK-------------P--GWDVEPLKAVRERF---P-D-IPLMADAN------------ 186 (354)
T ss_pred HHHHHHHHcCCcEEE----EecC-------------h--HHHHHHHHHHHHHC---C-C-CeEEEECC------------
Confidence 455454455565555 3421 1 23466676666665 5 3 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.+++. ++ +.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.+++
T Consensus 187 -----------~~~~~~~a~-~~-~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~ 252 (354)
T cd03317 187 -----------SAYTLADIP-LL-KRLDEYGLLMIEQPLAADDLIDHAELQKLLKTPICLDESI-QSAEDARKAIELGAC 252 (354)
T ss_pred -----------CCCCHHHHH-HH-HHhhcCCccEEECCCChhHHHHHHHHHhhcCCCEEeCCcc-CCHHHHHHHHHcCCC
Confidence 356777764 54 558999999999999999999999999999 999999975 459999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
|++ ++|++++||||++++++++|+++|+++++|++ .|+..+..+.++++.......++.+
T Consensus 253 d~~------~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~-~es~l~~~a~~hla~~~~~~~~~~~ 312 (354)
T cd03317 253 KII------NIKPGRVGGLTEALKIHDLCQEHGIPVWCGGM-LESGIGRAHNVALASLPNFTYPGDI 312 (354)
T ss_pred CEE------EecccccCCHHHHHHHHHHHHHcCCcEEecCc-ccchHHHHHHHHHHhCCCCCCcccc
Confidence 999 99999999999999999999999999988765 5877766666555543444334443
No 23
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=2e-37 Score=314.10 Aligned_cols=285 Identities=14% Similarity=0.121 Sum_probs=211.9
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
...+.|+|+|++|+ +|+||+.+++. +.|.+++...+...+++.++|.|+| ++.+.+++++.|....
T Consensus 21 ~~~~lV~v~~~~G~----------~G~GE~~~~~~---~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~~~~~~~~ 86 (324)
T TIGR01928 21 RDCLIIELIDDKGN----------AGFGEVVAFQT---PWYTHETIATVKHIIEDFFEPNINK-EFEHPSEALELVRSLK 86 (324)
T ss_pred CcEEEEEEEECCCC----------eEEEeccccCC---CCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcc
Confidence 46788999999999 49999875321 2356667777777788889999999 9999999998885431
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ...|++|||+||||+.||..|+|||++||| .+.++ |+|.+++.+ ..+...
T Consensus 87 -----~--~~~a~said~AlwDl~gk~~g~Pl~~llGg----~~~~i--~~y~~~~~~----------------~~~~~~ 137 (324)
T TIGR01928 87 -----G--TPMAKAGLEMALWDMYHKLPSFSLAYGQGK----LRDKA--PAGAVSGLA----------------NDEQML 137 (324)
T ss_pred -----C--CcHHHHHHHHHHHHHHHhhhCCcHHHHhCC----CCCeE--EEeEEcCCC----------------CHHHHH
Confidence 1 135999999999999999999999999987 23444 555542111 012234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.+|+++ + + .++ +|+|
T Consensus 138 ~~a~~~~~~Gf~~~K----iKv~-------------~--~~d~~~v~~vr~~~---~-~-~~l~vDaN------------ 181 (324)
T TIGR01928 138 KQIESLKATGYKRIK----LKIT-------------P--QIMHQLVKLRRLRF---P-Q-IPLVIDAN------------ 181 (324)
T ss_pred HHHHHHHHcCCcEEE----EEeC-------------C--chhHHHHHHHHHhC---C-C-CcEEEECC------------
Confidence 555555556666655 3421 1 22356677776655 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.+++ .+ .+.+++|++.|||||++++|++++++|++++ +||++||+. .++++++++++.+++
T Consensus 182 -----------~~~~~~~a-~~-~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~-~~~~~~~~~~~~~~~ 247 (324)
T TIGR01928 182 -----------ESYDLQDF-PR-LKELDRYQLLYIEEPFKIDDLSMLDELAKGTITPICLDESI-TSLDDARNLIELGNV 247 (324)
T ss_pred -----------CCCCHHHH-HH-HHHHhhCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCc-CCHHHHHHHHHcCCC
Confidence 35677775 44 4568999999999999999999999999999 999999975 559999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
|++ ++|++++||||++++++++|+++|++++++++. |+.....+.++++...++..+|..
T Consensus 248 dvi------~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~-es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 248 KVI------NIKPGRLGGLTEVQKAIETCREHGAKVWIGGML-ETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred CEE------EeCcchhcCHHHHHHHHHHHHHcCCeEEEcceE-cccHHHHHHHHHHhCCCCCCCCCC
Confidence 999 999999999999999999999999999887654 766554443333433445555543
No 24
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=3.4e-37 Score=318.35 Aligned_cols=284 Identities=17% Similarity=0.155 Sum_probs=203.3
Q ss_pred CceEEEEEEeCC---C--ceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCC--------
Q 011677 61 IPTVEVDLFTHK---G--MFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPI-------- 127 (479)
Q Consensus 61 ~~~v~V~v~t~~---G--~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~-------- 127 (479)
..++.|+|+|++ | + +|+||+.. +.... ...+++.++|.|+|+||.
T Consensus 26 ~~~~lV~v~td~~~~G~~~----------~G~Ge~~~----------~~~~~--~~~i~~~~~p~LiG~dp~~~~~~~~~ 83 (385)
T cd03326 26 LTTSLVAVVTDVVRDGRPV----------VGYGFDSI----------GRYAQ--GGLLRERFIPRLLAAAPDSLLDDAGG 83 (385)
T ss_pred cEEEEEEEEeccccCCCce----------eEEEeccC----------CchhH--HHHHHHHHHHHhcCCChHHhhhcccc
Confidence 456899999999 8 6 49999741 11111 234778899999999999
Q ss_pred --CHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccC--CCCcccccceEEeecCCccCCC
Q 011677 128 --LQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAG--KTNLTLPVPAFTVISGGKHAGN 203 (479)
Q Consensus 128 --~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~--~~~~~~Pvp~~~~i~GG~~~~~ 203 (479)
+.+++|+.|.+..... .+.....|++|||+||||+.||.+|+|||++|||..+ ..+.+ +|.|.. +|...+.
T Consensus 84 ~~~~~~l~~~~~~~~~~~-~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~--v~~y~~--~~~~~~~ 158 (385)
T cd03326 84 NLDPARAWAAMMRNEKPG-GHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPR--VPVYAA--GGYYYPG 158 (385)
T ss_pred cCCHHHHHHHHHhcCccC-CCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCe--EEEEEe--cCCCCCC
Confidence 4499999997522111 2223457999999999999999999999999998321 11234 555653 2211000
Q ss_pred cccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce
Q 011677 204 NLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW 283 (479)
Q Consensus 204 ~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i 283 (479)
.+ .....+++.+...++|+++| .|.| . .+.+.+.+.++.+|+++ |.+ .++
T Consensus 159 -~~---------~~~~~~~a~~~~~~Gf~~~K----ikvg-------~-----~~~~~di~~v~avRe~~---G~~-~~l 208 (385)
T cd03326 159 -DD---------LGRLRDEMRRYLDRGYTVVK----IKIG-------G-----APLDEDLRRIEAALDVL---GDG-ARL 208 (385)
T ss_pred -CC---------HHHHHHHHHHHHHCCCCEEE----EeCC-------C-----CCHHHHHHHHHHHHHhc---CCC-CeE
Confidence 00 01133455555555665555 3433 1 11223455555555554 644 456
Q ss_pred -eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCc
Q 011677 284 -SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDL 361 (479)
Q Consensus 284 -iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~ 361 (479)
+|+| +.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||+
T Consensus 209 ~vDaN-----------------------~~w~~~~A~~~~-~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs 264 (385)
T cd03326 209 AVDAN-----------------------GRFDLETAIAYA-KALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGEN 264 (385)
T ss_pred EEECC-----------------------CCCCHHHHHHHH-HHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCC
Confidence 9983 367889999875 457999999999999999999999999999 99999998
Q ss_pred cccCHHHHHHHhcCCCC----ceecccCCCCcCccccccHHHHHHHHHHHhhCCCe--EEEecCCCCCchhHHHHhHhhc
Q 011677 362 LMSNPKRIERATLIPLA----MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWG--VVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 362 ~~t~~~~~~~~i~~~a~----d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~--~~v~h~~get~d~~~~dlAv~~ 435 (479)
.. ++++++++++.+++ |++ |+|++++||||++++++++|+++|++ ++++|.. ..+.+|++.+.
T Consensus 265 ~~-~~~~~~~li~~~a~~~~~div------~~d~~~~GGit~~~kia~lA~a~gi~~~~~~pH~~----~~a~lhl~aa~ 333 (385)
T cd03326 265 LF-SLQDARNLLRYGGMRPDRDVL------QFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPHGG----HLMSLHIAAGL 333 (385)
T ss_pred cC-CHHHHHHHHHhCCccccCCEE------EeCchhhCCHHHHHHHHHHHHHcCCCCceeecchH----HHHHHHHHhcC
Confidence 65 49999999999988 999 99999999999999999999999998 3677852 34567777775
Q ss_pred C
Q 011677 436 A 436 (479)
Q Consensus 436 ~ 436 (479)
.
T Consensus 334 ~ 334 (385)
T cd03326 334 G 334 (385)
T ss_pred C
Confidence 4
No 25
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=318.14 Aligned_cols=281 Identities=22% Similarity=0.248 Sum_probs=205.1
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
..+.|+|+|++|++ |+||+....- +.+. ..... + .+++.++|++|.+.+.+|+.|.....
T Consensus 30 ~~v~v~i~~d~G~~----------G~GE~~~~~~---~~~~----~~~~~-~--~~~~~l~g~d~~~i~~~~~~~~~~~~ 89 (372)
T COG4948 30 TRVIVEITTDDGIV----------GWGEAVPGGR---ARYG----EEAEA-V--LLAPLLIGRDPFDIERIWQKLYRAGF 89 (372)
T ss_pred eEEEEEEEECCCce----------eeccccCccc---ccch----hhhhH-H--HHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 37999999999994 9999876421 1111 11111 1 68999999999999999998876322
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
...+++..+|++|||+||||+.||..|+|||++||| ..+ ..++.|+...++ .+ ..+...
T Consensus 90 -~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg---~~r--~~v~~y~~~~~~------~~---------~~e~~~ 148 (372)
T COG4948 90 -ARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGG---KVR--DEVRAYASGGGG------ED---------PEEMAA 148 (372)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCC---cee--eeEEEEEecCCC------CC---------CHHHHH
Confidence 223556678999999999999999999999999998 333 445556653221 00 112233
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 222 EALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 222 ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
++.+... ++|+.+| .|.|. ++.+.+.++++.||+++ |.+ .+| +|+|
T Consensus 149 ~~~~~~~~~G~~~~K----lk~g~------------~~~~~d~~~v~avRe~~---g~~-~~l~iDan------------ 196 (372)
T COG4948 149 EAARALVELGFKALK----LKVGV------------GDGDEDLERVRALREAV---GDD-VRLMVDAN------------ 196 (372)
T ss_pred HHHHHHHhcCCceEE----ecCCC------------CchHHHHHHHHHHHHHh---CCC-ceEEEeCC------------
Confidence 3333333 4566655 34331 11224567777777777 644 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.+ .+++|+|.|||||++++|++++++|++.+ +||+.||+.. +.++++++++.+++
T Consensus 197 -----------~~~~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~~PIa~gEs~~-~~~~~~~l~~~~a~ 263 (372)
T COG4948 197 -----------GGWTLEEAIRLAR-ALEEYGLEWIEEPLPPDDLEGLRELRAATSTPIAAGESVY-TRWDFRRLLEAGAV 263 (372)
T ss_pred -----------CCcCHHHHHHHHH-HhcccCcceEECCCCccCHHHHHHHHhcCCCCEecCcccc-cHHHHHHHHHcCCC
Confidence 3678889998754 57899999999999999999999999998 9999999865 59999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|++ |+|++++||||++++++++|+.+++.+ .+|..+.....+.+|++.+.
T Consensus 264 div------~~d~~~~GGite~~kia~~A~~~~~~v-~~h~~~~i~~aa~~hla~~~ 313 (372)
T COG4948 264 DIV------QPDLARVGGITEALKIAALAEGFGVMV-GPHVEGPISLAAALHLAAAL 313 (372)
T ss_pred Cee------cCCccccCCHHHHHHHHHHHHHhCCce-eccCchHHHHHHHHHHhhcc
Confidence 999 999999999999999999999888774 56655333445556666554
No 26
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=4.5e-37 Score=317.84 Aligned_cols=272 Identities=16% Similarity=0.158 Sum_probs=200.4
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
.++.|+|+|++|++ |+||+.. ++ .+...+++.|+|.|+|+||.+.+.+|+.|.+...
T Consensus 57 ~~vlVrI~td~G~~----------G~Ge~~~----------~~---~~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~ 113 (394)
T PRK15440 57 GTLVVEVEAENGQV----------GFAVSTA----------GE---MGAFIVEKHLNRFIEGKCVSDIELIWDQMLNATL 113 (394)
T ss_pred ceEEEEEEECCCCE----------EEEeCCC----------cH---HHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhcc
Confidence 56899999999994 9998421 11 2234577889999999999999999999976422
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
....+++..+|++|||+||||+.||.+|+|||+|||| ..+.++| +|+. |+. | +
T Consensus 114 ~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~~LLGG---~~r~~v~--~y~~--~~~--------------~------~ 166 (394)
T PRK15440 114 YYGRKGLVMNTISCVDLALWDLLGKVRGLPVYKLLGG---AVRDELQ--FYAT--GAR--------------P------D 166 (394)
T ss_pred ccCCccHhhhHHHHHHHHHHHHhhhHcCCcHHHHcCC---CCCCeeE--EEec--CCC--------------h------H
Confidence 1222345567999999999999999999999999998 3344555 4542 210 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccC-CCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVG-EDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg-~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
.+. ..+|+++| .|.|. | .+|. ..++.+.++++.+|+++ |.+ ..+ +|||
T Consensus 167 ~a~---~~Gf~~~K----ik~~~-----g~~~g~--~~~~~di~~v~avReav---G~d-~~l~vDaN------------ 216 (394)
T PRK15440 167 LAK---EMGFIGGK----MPLHH-----GPADGD--AGLRKNAAMVADMREKV---GDD-FWLMLDCW------------ 216 (394)
T ss_pred HHH---hCCCCEEE----EcCCc-----Ccccch--HHHHHHHHHHHHHHHhh---CCC-CeEEEECC------------
Confidence 111 23566665 34321 1 0110 11233455555555555 755 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIP 376 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~ 376 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|++++ +||++||... ++++++++++.+
T Consensus 217 -----------~~~~~~~Ai~~~-~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia~gE~~~-~~~~~~~li~~~ 283 (394)
T PRK15440 217 -----------MSLDVNYATKLA-HACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVTSGEHEA-TLQGFRTLLEMG 283 (394)
T ss_pred -----------CCCCHHHHHHHH-HHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCceecCCCcc-CHHHHHHHHHcC
Confidence 367889999875 457999999999999999999999999997 6788899765 499999999999
Q ss_pred CCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCC
Q 011677 377 LAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437 (479)
Q Consensus 377 a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~ 437 (479)
++|++ |+|++++||||++++++++|+++|+++ ++|.+ ....+|++.+..+
T Consensus 284 a~Div------q~d~~~~GGit~~~kia~lA~a~gi~~-~pH~~----~~~~~hl~aa~~n 333 (394)
T PRK15440 284 CIDII------QPDVGWCGGLTELVKIAALAKARGQLV-VPHGS----SVYSHHFVITRTN 333 (394)
T ss_pred CCCEE------eCCccccCCHHHHHHHHHHHHHcCCee-cccCH----HHHHHHHHhhCcC
Confidence 99999 999999999999999999999999996 66853 2456788777643
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=5.1e-37 Score=315.47 Aligned_cols=306 Identities=19% Similarity=0.164 Sum_probs=217.0
Q ss_pred eeeEEEEEEEecC--------CCCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHH
Q 011677 46 VITKIKARQILDS--------RGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERI 117 (479)
Q Consensus 46 ~I~~I~~~~i~ds--------~g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l 117 (479)
+|++|+.+.+.-. .....+.|+|+|++|++ |+||+.+.. . .......+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~~~~~~~~~~~~V~v~~~~G~~----------G~GE~~~~~-------~---~~~~~~~l~~~~ 60 (357)
T cd03316 1 KITDVETFVLRVPLPEPGGAVTWRNLVLVRVTTDDGIT----------GWGEAYPGG-------R---PSAVAAAIEDLL 60 (357)
T ss_pred CeeEEEEEEEecCCcccccccccceEEEEEEEeCCCCE----------EEEeccCCC-------C---chHHHHHHHHHH
Confidence 4777877776321 23567999999999984 999986531 1 233455677779
Q ss_pred HHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecC
Q 011677 118 SEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISG 197 (479)
Q Consensus 118 ~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~G 197 (479)
+|.|+|+++.+.+++++.|.+.....+.++....|++|||+||||+.||..|+|||++||| ..+.+ +|++..+.+
T Consensus 61 ~p~l~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg---~~~~~--v~~~~~~~~ 135 (357)
T cd03316 61 APLLIGRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGG---KVRDR--VRVYASGGG 135 (357)
T ss_pred HHHccCCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCC---ccCCc--eeeEEecCC
Confidence 9999999999999999998764321111223367999999999999999999999999998 22344 444554322
Q ss_pred CccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 011677 198 GKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG 277 (479)
Q Consensus 198 G~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g 277 (479)
+. .+. ....+++.+...++|+.+| .|.|.. .......+.+.+.++.||+++ |
T Consensus 136 ~~-----~~~---------~~~~~~a~~~~~~Gf~~~K----ik~g~~-------~~~~~~~~~d~~~v~~ir~~~---g 187 (357)
T cd03316 136 YD-----DSP---------EELAEEAKRAVAEGFTAVK----LKVGGP-------DSGGEDLREDLARVRAVREAV---G 187 (357)
T ss_pred CC-----CCH---------HHHHHHHHHHHHcCCCEEE----EcCCCC-------CcchHHHHHHHHHHHHHHHhh---C
Confidence 10 001 1122333333344455444 343310 000000123455566665555 6
Q ss_pred CCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hh
Q 011677 278 IPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQ 355 (479)
Q Consensus 278 ~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~ 355 (479)
.+ ..+ +|+| +.||.++++++. +.++++++.|||||++++|++++++|++++ +|
T Consensus 188 ~~-~~l~vDaN-----------------------~~~~~~~a~~~~-~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ip 242 (357)
T cd03316 188 PD-VDLMVDAN-----------------------GRWDLAEAIRLA-RALEEYDLFWFEEPVPPDDLEGLARLRQATSVP 242 (357)
T ss_pred CC-CEEEEECC-----------------------CCCCHHHHHHHH-HHhCccCCCeEcCCCCccCHHHHHHHHHhCCCC
Confidence 44 355 8883 367889999876 457899999999999999999999999999 99
Q ss_pred hhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc
Q 011677 356 VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL 435 (479)
Q Consensus 356 I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~ 435 (479)
|++||+.. ++++++++++.+++|++ ++|++++||+|++++++++|+++|++++++++.+....++.+|||.++
T Consensus 243 i~~dE~~~-~~~~~~~~i~~~~~d~v------~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~~i~~aa~~hla~a~ 315 (357)
T cd03316 243 IAAGENLY-TRWEFRDLLEAGAVDII------QPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGGPIGLAASLHLAAAL 315 (357)
T ss_pred EEeccccc-cHHHHHHHHHhCCCCEE------ecCccccCCHHHHHHHHHHHHHcCCeEeccCCCCHHHHHHHHHHHHhC
Confidence 99999764 59999999999999999 999999999999999999999999998776553322345777887776
Q ss_pred C
Q 011677 436 A 436 (479)
Q Consensus 436 ~ 436 (479)
.
T Consensus 316 ~ 316 (357)
T cd03316 316 P 316 (357)
T ss_pred c
Confidence 4
No 28
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.7e-36 Score=312.56 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=201.7
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
.+.+.|+|+|++|++ |+||+.+ . . .+...+.+.++|.|+|+||.+.+++|+.|.+..
T Consensus 32 ~~~~~Vri~td~G~~----------G~G~~~~-------~-----~-~~~~~~~~~l~p~liG~d~~~~~~~~~~~~~~~ 88 (368)
T cd03329 32 RKLALLTIETDEGAK----------GHAFGGR-------P-----V-TDPALVDRFLKKVLIGQDPLDRERLWQDLWRLQ 88 (368)
T ss_pred ceEEEEEEEECCCCe----------EEEecCC-------c-----h-hHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHh
Confidence 357999999999984 9987421 1 1 123456778999999999999999999997632
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
. + ....|++|||+||||+.||.+|+|||++||| . +.++| .|.+++.+... .... ......
T Consensus 89 ~----~-~~~~A~said~AlwDl~gk~~g~Pl~~LLGg---~-~~~v~--~y~s~~~~~~~-~~~~--------~~~~~~ 148 (368)
T cd03329 89 R----G-LTDRGLGLVDIALWDLAGKYLGLPVHRLLGG---Y-REKIP--AYASTMVGDDL-EGLE--------SPEAYA 148 (368)
T ss_pred c----C-cchhHHHHHHHHHHHHhhhhcCCcHHHHhhc---c-cccee--EEEecCCCccc-ccCC--------CHHHHH
Confidence 1 1 2346999999999999999999999999998 2 34544 45543222100 0000 001122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|. +. ....+.+.+.++.||+++ |.+ ..| +|+|
T Consensus 149 ~~a~~~~~~Gf~~~K----ik~-------~~----~~~~~~di~~i~~vR~~~---G~~-~~l~vDan------------ 197 (368)
T cd03329 149 DFAEECKALGYRAIK----LHP-------WG----PGVVRRDLKACLAVREAV---GPD-MRLMHDGA------------ 197 (368)
T ss_pred HHHHHHHHcCCCEEE----Eec-------CC----chhHHHHHHHHHHHHHHh---CCC-CeEEEECC------------
Confidence 333333333444443 221 10 011234566666666665 644 456 9983
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||...+++++++++++.+++
T Consensus 198 -----------~~~~~~~A~~~~~-~l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 198 -----------HWYSRADALRLGR-ALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred -----------CCcCHHHHHHHHH-HhhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 3578899998754 47999999999999999999999999999 9999999765449999999999999
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
|++ |+|++++||||++++++++|+++|++++ .|.. .++.+|+|.++.
T Consensus 266 d~v------~~d~~~~GGit~~~~ia~~a~~~gi~~~-~h~~----~~a~~hlaaa~~ 312 (368)
T cd03329 266 DFL------RADVNLVGGITGAMKTAHLAEAFGLDVE-LHGN----GAANLHVIAAIR 312 (368)
T ss_pred CEE------ecCccccCCHHHHHHHHHHHHHcCCEEE-EECh----HHHHHHHHhcCC
Confidence 999 9999999999999999999999999975 4653 456788888764
No 29
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4e-36 Score=312.74 Aligned_cols=288 Identities=19% Similarity=0.154 Sum_probs=201.4
Q ss_pred eeeEEEEEEEecC----------C-C---CceEEEEEEeCC-CceeeecCCCCCCCceeeeeeccCCCCccccccHHHHH
Q 011677 46 VITKIKARQILDS----------R-G---IPTVEVDLFTHK-GMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAV 110 (479)
Q Consensus 46 ~I~~I~~~~i~ds----------~-g---~~~v~V~v~t~~-G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av 110 (479)
+|++|+++.+.-. . . ...+.|+|+|++ |+ +|+||+... +.+.....
T Consensus 2 kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~----------~G~Ge~~~~---------~~~~~~~~ 62 (415)
T cd03324 2 KITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGL----------KGHGLTFTI---------GRGNEIVC 62 (415)
T ss_pred eEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCC----------EEEEEeccC---------CCchHHHH
Confidence 6889988887311 0 1 136899999999 99 499997431 22233333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHh-hhc----c--CCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC-
Q 011677 111 KNINERISEALVGMDPILQSQIDQAMID-LDK----T--EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK- 182 (479)
Q Consensus 111 ~~i~~~l~p~LiG~d~~~~~~id~~l~~-~~~----~--~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~- 182 (479)
. +.+.++|.|+|+||.+++.+++.|.+ +.. . ...+++...|++|||+||||++||.+|+|||+||||....
T Consensus 63 ~-~~~~lap~liG~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~ 141 (415)
T cd03324 63 A-AIEALAHLVVGRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEE 141 (415)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHH
Confidence 3 44679999999999998555444433 211 0 1012333579999999999999999999999999982100
Q ss_pred -----------------------------C--C----cccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHH
Q 011677 183 -----------------------------T--N----LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227 (479)
Q Consensus 183 -----------------------------~--~----~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~ 227 (479)
. + .+-.+|.|+. ++|... .+. +...+++.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~-~~~~~~---~~~---------~~~~~~a~~~~ 208 (415)
T cd03324 142 LVSCIDFRYITDALTPEEALEILRRGQPGKAAREADLLAEGYPAYTT-SAGWLG---YSD---------EKLRRLCKEAL 208 (415)
T ss_pred hhhcccceeeccccCHHHHHHHhhhcccchhhhhhhhhccCCceeec-CCcccC---CCH---------HHHHHHHHHHH
Confidence 0 0 0023444542 222110 011 12335555555
Q ss_pred HHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCC
Q 011677 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPN 306 (479)
Q Consensus 228 ~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~ 306 (479)
.++|+.+| .|.| . +.+.+.+.++.+|+++ |.+ .++ +|+|
T Consensus 209 ~~Gf~~~K----iKvg-------~------~~~~d~~~v~avRe~v---G~~-~~L~vDaN------------------- 248 (415)
T cd03324 209 AQGFTHFK----LKVG-------A------DLEDDIRRCRLAREVI---GPD-NKLMIDAN------------------- 248 (415)
T ss_pred HcCCCEEE----EeCC-------C------CHHHHHHHHHHHHHhc---CCC-CeEEEECC-------------------
Confidence 56666665 3422 1 1223455565565554 755 456 9983
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCCCCceec
Q 011677 307 KSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIPLAMLFF 382 (479)
Q Consensus 307 ~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~a~d~v~ 382 (479)
+.||.++++++.+ .+++|++.|||||++++|++++++|++++ +||++||+.. ++++++++++.+++|++
T Consensus 249 ----~~w~~~~A~~~~~-~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~-~~~~~~~ll~~~a~dil- 321 (415)
T cd03324 249 ----QRWDVPEAIEWVK-QLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHCQ-NRVVFKQLLQAGAIDVV- 321 (415)
T ss_pred ----CCCCHHHHHHHHH-HhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCccC-CHHHHHHHHHcCCCCEE-
Confidence 3678899998765 57999999999999999999999999987 8999999865 59999999999999999
Q ss_pred ccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 383 SRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 383 ~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
|+|++++||||++++++++|+++|+++ ++|.
T Consensus 322 -----~~d~~~~GGit~~~kia~lA~a~gi~~-~pH~ 352 (415)
T cd03324 322 -----QIDSCRLGGVNENLAVLLMAAKFGVPV-CPHA 352 (415)
T ss_pred -----EeCccccCCHHHHHHHHHHHHHcCCeE-EEcC
Confidence 999999999999999999999999996 5675
No 30
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=2.5e-35 Score=308.54 Aligned_cols=311 Identities=13% Similarity=0.059 Sum_probs=208.4
Q ss_pred CceeeEEEEEEEe--cC-----C-----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHH
Q 011677 44 PSVITKIKARQIL--DS-----R-----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVK 111 (479)
Q Consensus 44 ~~~I~~I~~~~i~--ds-----~-----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~ 111 (479)
++.|+.++...|- |+ . ....+.|+|+|++|+ +|+||+.. ++++ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~v~Td~Gi----------~G~GEa~~----------~~~~---~~ 59 (441)
T TIGR03247 3 TPVVTEMRVIPVAGHDSMLLNLSGAHAPFFTRNIVILTDSSGN----------TGVGEVPG----------GEKI---RA 59 (441)
T ss_pred CCEEeEEEEEeeccccchhccccccCCCcceEEEEEEEECCCC----------eEEEeCCC----------cHHH---HH
Confidence 4578888887772 11 1 245789999999999 49999632 1222 23
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhhhc---cCCCCc------hhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCC
Q 011677 112 NINERISEALVGMDPILQSQIDQAMIDLDK---TEKKGE------LGANAILAVSIAACKAGAAEKEVPLYKHIADLAGK 182 (479)
Q Consensus 112 ~i~~~l~p~LiG~d~~~~~~id~~l~~~~~---~~~~~~------~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~ 182 (479)
.++ .++|.|+|+||.++++||+.|..... ..+.+. ....|++|||+||||+.||.+|+|||+|||+. .
T Consensus 60 ~l~-~lap~LiG~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg--~ 136 (441)
T TIGR03247 60 TLE-DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEG--Q 136 (441)
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCC--C
Confidence 344 69999999999999999999965320 011111 13469999999999999999999999999931 2
Q ss_pred CCcccccceEEeecCCc-------cCCC-ccc-ccceee---ccCCCCcHHHHHHHHHH-HHHHHHHHHHhhhCCCCccc
Q 011677 183 TNLTLPVPAFTVISGGK-------HAGN-NLA-IQDIMI---LPIGASSFGEALQMGSE-TYHHLKAVIAEKYGAHGCNV 249 (479)
Q Consensus 183 ~~~~~Pvp~~~~i~GG~-------~~~~-~l~-~~e~~i---~p~~~~~~~ea~~~~~e-~~~~lk~~l~~K~G~~~~~v 249 (479)
.+.++|++.++. +.|. +..+ ..+ ....+. ........+++.+...+ +|+++| .|.|.
T Consensus 137 ~r~~vp~y~~~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~K----iKvG~----- 206 (441)
T TIGR03247 137 QRDEVEMLGYLF-FIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFK----LKGGV----- 206 (441)
T ss_pred ccceEEEeeeee-eccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEE----EecCC-----
Confidence 334555533221 1110 0000 000 000000 00011123333333322 565555 45331
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 011677 250 GEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD 328 (479)
Q Consensus 250 g~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~ 328 (479)
++.+.+.++++.+|+++. + .+| +|+| +.||.++++++.++ +++
T Consensus 207 -------~~~~~Di~~v~avRea~~----d-~~L~vDAN-----------------------~~wt~~~Ai~~~~~-Le~ 250 (441)
T TIGR03247 207 -------LRGEEEIEAVTALAKRFP----Q-ARITLDPN-----------------------GAWSLDEAIALCKD-LKG 250 (441)
T ss_pred -------CChHHHHHHHHHHHHhCC----C-CeEEEECC-----------------------CCCCHHHHHHHHHH-hhh
Confidence 111334566666665541 2 346 9983 46789999987655 688
Q ss_pred CCceeeecCCCccC----HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHH
Q 011677 329 YPIVSIEDPFDKED----WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEV 403 (479)
Q Consensus 329 ~~i~~iEdP~~~~D----~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i 403 (479)
| +.|||||++++| ++++++|++++ +||++||+. +++++++++++.+++|++ ++|+. +||||+++++
T Consensus 251 ~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~-~~~~~~~~li~~~avdi~------~~d~~-~gGIt~~~kI 321 (441)
T TIGR03247 251 V-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIA-TDWRQMGHALQLQAVDIP------LADPH-FWTMQGSVRV 321 (441)
T ss_pred h-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCcc-CCHHHHHHHHHhCCCCEE------eccCC-cchHHHHHHH
Confidence 9 999999999999 99999999999 999999975 459999999999999999 99995 6789999999
Q ss_pred HHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 404 VKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 404 ~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+++|+++|+.+ .+|...++.. ++.+|||.++.
T Consensus 322 a~lA~a~Gi~v-~~h~~~~~~i~~aa~~hlaaa~p 355 (441)
T TIGR03247 322 AQMCHDWGLTW-GSHSNNHFDISLAMFTHVAAAAP 355 (441)
T ss_pred HHHHHHcCCEE-EEeCCccCHHHHHHHHHHHHhCC
Confidence 99999999986 5787555544 45667776653
No 31
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-35 Score=304.64 Aligned_cols=304 Identities=15% Similarity=0.111 Sum_probs=204.8
Q ss_pred eeeEEEEEEEec--------CC----CCceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHH
Q 011677 46 VITKIKARQILD--------SR----GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNI 113 (479)
Q Consensus 46 ~I~~I~~~~i~d--------s~----g~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i 113 (479)
+|++|++..+.- +. ..+.+.|+|+|++|+ +|+||+.. + ..++..+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~----------~G~Ge~~~----------~---~~~~~~~ 57 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGN----------TGVGESPG----------G---AEALEAL 57 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCC----------eeccccCC----------C---HHHHHHH
Confidence 478888866631 11 246899999999999 49998532 1 1223334
Q ss_pred HHHHHHhhcCCCC-CCHHHHHHHHHhhhccCCCC---------chhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCC
Q 011677 114 NERISEALVGMDP-ILQSQIDQAMIDLDKTEKKG---------ELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKT 183 (479)
Q Consensus 114 ~~~l~p~LiG~d~-~~~~~id~~l~~~~~~~~~~---------~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~ 183 (479)
..++|.|+|+++ .+.+.+|+.|.+.......+ ++...|++|||+||||+.||.+|+|||++||| ..
T Consensus 58 -~~~~~~llg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG---~~ 133 (395)
T cd03323 58 -LEAARSLVGGDVFGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGG---GQ 133 (395)
T ss_pred -HHHhHHHhCCCcchhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCC---Cc
Confidence 357889999888 57778898887532101111 13467999999999999999999999999998 33
Q ss_pred CcccccceEEeec--CCccCCCccc--ccc--eeeccCCCCcHHHHHHHHH-HHHHHHHHHHHhhhCCCCcccCCCCCCC
Q 011677 184 NLTLPVPAFTVIS--GGKHAGNNLA--IQD--IMILPIGASSFGEALQMGS-ETYHHLKAVIAEKYGAHGCNVGEDGGLA 256 (479)
Q Consensus 184 ~~~~Pvp~~~~i~--GG~~~~~~l~--~~e--~~i~p~~~~~~~ea~~~~~-e~~~~lk~~l~~K~G~~~~~vg~~G~~~ 256 (479)
+.++|+ |+.+. |+.+... .. ... +...+..+...+++.+... ++|+.+| .|.| .
T Consensus 134 r~~v~~--ya~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~K----iKvG-------~----- 194 (395)
T cd03323 134 RDSVPF--LAYLFYKGDRHKTD-LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFK----LKGG-------V----- 194 (395)
T ss_pred cCeEEE--EEEeeecccccccc-ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEE----EecC-------C-----
Confidence 445555 54432 2111000 00 000 0000001112223333322 2555554 3422 1
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeee
Q 011677 257 PNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIE 335 (479)
Q Consensus 257 ~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iE 335 (479)
.+.+.+.+.++.+|+++ + + ..+ +|+| +.||.++++++.+ .+++ ++.|||
T Consensus 195 ~~~~~di~~v~avRea~---~-~-~~l~vDaN-----------------------~~w~~~~A~~~~~-~l~~-~l~~iE 244 (395)
T cd03323 195 LPGEEEIEAVKALAEAF---P-G-ARLRLDPN-----------------------GAWSLETAIRLAK-ELEG-VLAYLE 244 (395)
T ss_pred CCHHHHHHHHHHHHHhC---C-C-CcEEEeCC-----------------------CCcCHHHHHHHHH-hcCc-CCCEEE
Confidence 11123455666666655 3 2 356 9984 3678899998765 4788 999999
Q ss_pred cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 336 DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 336 dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
||++ |++++++|++++ +||+.||+. ++.++++++++.+++|++ |+|++++||||+++|++++|+++|+++
T Consensus 245 eP~~--d~~~~~~L~~~~~~PIa~dEs~-~~~~~~~~~i~~~avdil------~~d~~~~GGit~~~kia~~A~~~gi~~ 315 (395)
T cd03323 245 DPCG--GREGMAEFRRATGLPLATNMIV-TDFRQLGHAIQLNAVDIP------LADHHFWGGMRGSVRVAQVCETWGLGW 315 (395)
T ss_pred CCCC--CHHHHHHHHHhcCCCEEcCCcc-cCHHHHHHHHHcCCCcEE------eeccccccCHHHHHHHHHHHHHcCCeE
Confidence 9998 999999999999 999999975 459999999999999999 999999999999999999999999997
Q ss_pred EEecCCCCCchh--HHHHhHhhc
Q 011677 415 VISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 415 ~v~h~~get~d~--~~~dlAv~~ 435 (479)
++ |...|+..+ +.+|+|.+.
T Consensus 316 ~~-h~~~e~~i~~aa~~hlaaa~ 337 (395)
T cd03323 316 GM-HSNNHLGISLAMMTHVAAAA 337 (395)
T ss_pred EE-ecCcccHHHHHHHHHHHHhC
Confidence 54 666776554 456666665
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.3e-34 Score=288.37 Aligned_cols=275 Identities=21% Similarity=0.205 Sum_probs=200.6
Q ss_pred ceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 62 PTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 62 ~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
..+.|+|+|+ |++ |+||+.+++ .|.+++...+...+++ +.|.|+|+|+. .+++++.|....
T Consensus 26 ~~~~v~v~t~-G~~----------G~GE~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~G~~~~-~~~~~~~l~~~~- 86 (316)
T cd03319 26 ENVIVEIELD-GIT----------GYGEAAPTP-----RVTGETVESVLAALKS-VRPALIGGDPR-LEKLLEALQELL- 86 (316)
T ss_pred eEEEEEEEEC-CEE----------EEEeecCCC-----CCCCCCHHHHHHHHHH-HHHHhcCCCch-HHHHHHHHHHhc-
Confidence 4688999999 984 999987642 2455555666555655 59999999999 999999887532
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHH
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFG 221 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ 221 (479)
. + ...|++|||+||||+.||..|+|+|++||| ..+.++|+ +..+.++ +.+ ...+
T Consensus 87 -~--~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g---~~~~~~~~--~~~~~~~-------~~~---------~~~~ 140 (316)
T cd03319 87 -P--G--NGAARAAVDIALWDLEAKLLGLPLYQLWGG---GAPRPLET--DYTISID-------TPE---------AMAA 140 (316)
T ss_pred -c--C--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCCcee--EEEEeCC-------CHH---------HHHH
Confidence 1 1 245999999999999999999999999766 23344444 4333221 111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeec
Q 011677 222 EALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDL 300 (479)
Q Consensus 222 ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~ 300 (479)
.+.+...++|+.+| .|.|. +.+.+.+.++.+|+++ | + .++ +|+|
T Consensus 141 ~~~~~~~~Gf~~iK----ik~g~-------------~~~~d~~~v~~lr~~~---g-~-~~l~vD~n------------- 185 (316)
T cd03319 141 AAKKAAKRGFPLLK----IKLGG-------------DLEDDIERIRAIREAA---P-D-ARLRVDAN------------- 185 (316)
T ss_pred HHHHHHHcCCCEEE----EEeCC-------------ChhhHHHHHHHHHHhC---C-C-CeEEEeCC-------------
Confidence 33333334454444 34331 1123345555555444 6 4 456 8883
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 301 ~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
+.|+.++++++. +.++++++.|||||++++|++++++|++.+ +||++||.. .++++++++++.+++|
T Consensus 186 ----------~~~~~~~A~~~~-~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~-~~~~~~~~~~~~~~~d 253 (316)
T cd03319 186 ----------QGWTPEEAVELL-RELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMADESC-FSAADAARLAGGGAYD 253 (316)
T ss_pred ----------CCcCHHHHHHHH-HHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCC-CCHHHHHHHHhcCCCC
Confidence 356788999875 457999999999999999999999999999 999999975 4599999999999999
Q ss_pred eecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhc
Q 011677 380 LFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 380 ~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~ 435 (479)
++ ++|++++||+|++++++++|+++|++++++++ .|+..+ +.+||+.++
T Consensus 254 ~v------~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~-~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 254 GI------NIKLMKTGGLTEALRIADLARAAGLKVMVGCM-VESSLSIAAAAHLAAAK 304 (316)
T ss_pred EE------EEeccccCCHHHHHHHHHHHHHcCCCEEEECc-hhhHHHHHHHHHHHhhc
Confidence 99 99999999999999999999999999876544 376554 455666664
No 33
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=100.00 E-value=4.5e-34 Score=250.08 Aligned_cols=131 Identities=60% Similarity=0.860 Sum_probs=115.4
Q ss_pred eeeEEEEEEEecCCCCceEEEEEEeCCCc-eeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCC
Q 011677 46 VITKIKARQILDSRGIPTVEVDLFTHKGM-FRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGM 124 (479)
Q Consensus 46 ~I~~I~~~~i~ds~g~~~v~V~v~t~~G~-~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~ 124 (479)
+|++|++|+|+||+|+|||+|+|+|++|. .++++|||+|+|.+|+.+++|+++.+|+|+++.+++++||+.|+|+|+|+
T Consensus 1 ~I~~v~~r~IlDsrG~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~ 80 (132)
T PF03952_consen 1 TITKVKAREILDSRGNPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGL 80 (132)
T ss_dssp BEEEEEEEEEE-TTS-EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTS
T ss_pred CeEEEEEEEEEcCCCCceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhc
Confidence 69999999999999999999999999995 59999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 011677 125 DPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHI 176 (479)
Q Consensus 125 d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lL 176 (479)
+|.||++||++|.++|+|+|++++|+|++.|||+|+|+++|+.+|+|||+||
T Consensus 81 ~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 81 DPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp BTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred chhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 34
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=99.97 E-value=2.8e-31 Score=268.89 Aligned_cols=261 Identities=17% Similarity=0.180 Sum_probs=185.1
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+.++.|+|+ ++|.+ ||||+.+++ .| +++..++...+. .+.|.|+ . ..+.+.++..+
T Consensus 27 ~~~~lv~l~-~~G~~----------G~GE~~p~~-----~~-~~~~~~~~~~l~-~~~~~l~-~-~~~~~~~~~~~---- 82 (321)
T PRK15129 27 ARVVVVELE-EEGIK----------GTGECTPYP-----RY-GESDASVMAQIM-SVVPQLE-K-GLTREALQKLL---- 82 (321)
T ss_pred eeEEEEEEE-eCCeE----------EEEeeCCcC-----CC-CCCHHHHHHHHH-HHHHHHh-C-CCCHHHHHhhc----
Confidence 456889998 67984 999998752 35 467777776664 6899997 2 22333333321
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ + ..|++|||+||||+.||..|+|||++||| ..+.++| .+..++-+ ......
T Consensus 83 ~--~-----~~a~~aid~AlwDl~gk~~~~pl~~llGg---~~~~~i~--~~~~~~~~----------------~~~~~~ 134 (321)
T PRK15129 83 P--A-----GAARNAVDCALWDLAARQQQQSLAQLIGI---TLPETVT--TAQTVVIG----------------TPEQMA 134 (321)
T ss_pred c--C-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCC---CCCCcee--EEEEecCC----------------CHHHHH
Confidence 1 1 35999999999999999999999999998 3233444 44333211 011223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+...++|+.+| .|.| + +.+.+.++.+|+++ + + .++ +|+|
T Consensus 135 ~~~~~~~~~G~~~~K----lKv~-------------~--~~d~~~v~avr~~~---~-~-~~l~vDaN------------ 178 (321)
T PRK15129 135 NSASALWQAGAKLLK----VKLD-------------N--HLISERMVAIRSAV---P-D-ATLIVDAN------------ 178 (321)
T ss_pred HHHHHHHHcCCCEEE----EeCC-------------C--chHHHHHHHHHHhC---C-C-CeEEEECC------------
Confidence 444444445565554 3421 1 12356777777665 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
+.||.++++++.. .++++++.||||||+++|++++++++ . +||+.||+.. ++++++++. +++
T Consensus 179 -----------~~w~~~~A~~~~~-~l~~~~i~~iEqP~~~~~~~~l~~~~--~~~pia~dEs~~-~~~d~~~~~--~~~ 241 (321)
T PRK15129 179 -----------ESWRAEGLAARCQ-LLADLGVAMLEQPLPAQDDAALENFI--HPLPICADESCH-TRSSLKALK--GRY 241 (321)
T ss_pred -----------CCCCHHHHHHHHH-HHHhcCceEEECCCCCCcHHHHHHhc--cCCCEecCCCCC-CHHHHHHHH--hhC
Confidence 3678899998764 47999999999999999999988765 5 9999999865 499999884 789
Q ss_pred ceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHh
Q 011677 379 MLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSV 433 (479)
Q Consensus 379 d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv 433 (479)
|++ ++|++++||||++++++++|+++|+++|++++. |+.....+.+++
T Consensus 242 d~v------~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~-es~i~~~a~~~l 289 (321)
T PRK15129 242 EMV------NIKLDKTGGLTEALALATEARAQGFALMLGCML-CTSRAISAALPL 289 (321)
T ss_pred CEE------EeCchhhCCHHHHHHHHHHHHHcCCcEEEecch-HHHHHHHHHHHH
Confidence 999 999999999999999999999999999998864 665544443333
No 35
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=99.97 E-value=2.6e-30 Score=255.14 Aligned_cols=208 Identities=19% Similarity=0.205 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHH
Q 011677 153 ILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYH 232 (479)
Q Consensus 153 ~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~ 232 (479)
++|||+||||+.||..|+|+|+++|+ . +.++|+ +..++.+ +. ....+++.+...++|+
T Consensus 45 ~~aid~Al~Dl~gk~~g~pv~~llG~---~-~~~i~~--~~~~~~~-------~~---------~~~~~~~~~~~~~G~~ 102 (265)
T cd03315 45 KAAVDMALWDLWGKRLGVPVYLLLGG---Y-RDRVRV--AHMLGLG-------EP---------AEVAEEARRALEAGFR 102 (265)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHcCC---C-CCceEE--EEEecCC-------CH---------HHHHHHHHHHHHCCCC
Confidence 69999999999999999999999987 2 344444 5443221 11 1123344334444454
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCC
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQN 311 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~ 311 (479)
.+| .|.| . .+ +++.+.++.||+++ |.+ ..+ +|+| +
T Consensus 103 ~~K----iKvg-------~----~~--~~d~~~v~~vr~~~---g~~-~~l~vDan-----------------------~ 138 (265)
T cd03315 103 TFK----LKVG-------R----DP--ARDVAVVAALREAV---GDD-AELRVDAN-----------------------R 138 (265)
T ss_pred EEE----EecC-------C----CH--HHHHHHHHHHHHhc---CCC-CEEEEeCC-----------------------C
Confidence 444 3422 1 11 23455566666555 543 355 8883 3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
.||.++++++.+ .++++++.|||||++++|++++++|++++ +||++||... ++++++++++.+++|++ ++|
T Consensus 139 ~~~~~~a~~~~~-~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~-~~~~~~~~i~~~~~d~v------~~k 210 (265)
T cd03315 139 GWTPKQAIRALR-ALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAF-TPHDAFRELALGAADAV------NIK 210 (265)
T ss_pred CcCHHHHHHHHH-HHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCC-CHHHHHHHHHhCCCCEE------EEe
Confidence 678899998764 57899999999999999999999999999 9999999764 59999999999999999 999
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchh--HHHHhHhhc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGL 435 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~ 435 (479)
++++||||++++++++|+++|++++++++ .|+..+ +.+|+|.++
T Consensus 211 ~~~~GGi~~~~~~~~~A~~~gi~~~~~~~-~~s~i~~~a~~hlaa~~ 256 (265)
T cd03315 211 TAKTGGLTKAQRVLAVAEALGLPVMVGSM-IESGLGTLANAHLAAAL 256 (265)
T ss_pred cccccCHHHHHHHHHHHHHcCCcEEecCc-cchHHHHHHHHHHHHhC
Confidence 99999999999999999999999877654 466554 555666665
No 36
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=99.97 E-value=5.7e-30 Score=247.39 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHH
Q 011677 153 ILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYH 232 (479)
Q Consensus 153 ~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~ 232 (479)
++|||+||||+.||.+|+|||++||| ..+.++|+ |. +
T Consensus 44 ~~aid~Al~Dl~gk~~~~pl~~llgg---~~~~~v~~--~~-------------------------~------------- 80 (229)
T cd00308 44 ISGIDMALWDLAAKALGVPLAELLGG---GSRDRVPA--YG-------------------------S------------- 80 (229)
T ss_pred HHHHHHHHHHHhHhHcCCcHHHHcCC---CCCCceec--cH-------------------------H-------------
Confidence 79999999999999999999999998 32334443 21 0
Q ss_pred HHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCC
Q 011677 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQN 311 (479)
Q Consensus 233 ~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~ 311 (479)
.+.++.||+++ |.+ .++ +|+| +
T Consensus 81 ------------------------------~~~i~~lr~~~---g~~-~~l~lDaN-----------------------~ 103 (229)
T cd00308 81 ------------------------------IERVRAVREAF---GPD-ARLAVDAN-----------------------G 103 (229)
T ss_pred ------------------------------HHHHHHHHHHh---CCC-CeEEEECC-----------------------C
Confidence 12345556655 533 355 9984 3
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
.||.++++++++. ++++++.|||||++++|++++++|++++ +||++||+. ++++++.++++.+++|++ ++|
T Consensus 104 ~~~~~~a~~~~~~-l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~-~~~~~~~~~~~~~~~d~~------~~k 175 (229)
T cd00308 104 AWTPKEAIRLIRA-LEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESV-TTVDDALEALELGAVDIL------QIK 175 (229)
T ss_pred CCCHHHHHHHHHH-hhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEeCCCC-CCHHHHHHHHHcCCCCEE------ecC
Confidence 5788999987654 7889999999999999999999999999 999999975 559999999999999999 999
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCc--hhHHHHhHhhcC
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETE--DSFIADLSVGLA 436 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~--d~~~~dlAv~~~ 436 (479)
++++||+|++++++++|+++|++++++++. |+. .++.+|+|.++.
T Consensus 176 ~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~-~s~i~~~a~~hlaa~~~ 222 (229)
T cd00308 176 PTRVGGLTESRRAADLAEAFGIRVMVHGTL-ESSIGTAAALHLAAALP 222 (229)
T ss_pred ccccCCHHHHHHHHHHHHHcCCEEeecCCC-CCHHHHHHHHHHHHhCC
Confidence 999999999999999999999998776654 543 456677777754
No 37
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.96 E-value=8.3e-29 Score=244.15 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHH
Q 011677 152 AILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY 231 (479)
Q Consensus 152 A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~ 231 (479)
|++|||+||||+.||..| || ..+. ++|.+..++++ +. ...+++.+...++|
T Consensus 48 a~aaid~AlwDl~gk~~g-------gg---~~~~--~v~~~~~~~~~-------~~----------~~~~~~~~~~~~Gf 98 (263)
T cd03320 48 LAFGIESALANLEALLVG-------FT---RPRN--RIPVNALLPAG-------DA----------AALGEAKAAYGGGY 98 (263)
T ss_pred HHHHHHHHHhcccccccC-------CC---CCcc--CcceeEEecCC-------CH----------HHHHHHHHHHhCCC
Confidence 789999999999999999 55 3233 45556554322 00 12234444444556
Q ss_pred HHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCC
Q 011677 232 HHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQ 310 (479)
Q Consensus 232 ~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~ 310 (479)
+.+| .|.|. .+.+++.+.++.+|+++ |.+ .++ +|+|
T Consensus 99 ~~~K----iKvg~------------~~~~~d~~~v~~vr~~~---g~~-~~l~vDaN----------------------- 135 (263)
T cd03320 99 RTVK----LKVGA------------TSFEEDLARLRALREAL---PAD-AKLRLDAN----------------------- 135 (263)
T ss_pred CEEE----EEECC------------CChHHHHHHHHHHHHHc---CCC-CeEEEeCC-----------------------
Confidence 5555 34331 11123455555555544 644 456 9984
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
+.||.++++++. +.+++|++.|||||++++|++++++|+ + +||++||+.. +++++.++++.+++|++ ++
T Consensus 136 ~~w~~~~A~~~~-~~l~~~~i~~iEqP~~~~d~~~~~~l~--~~~PIa~dEs~~-~~~~~~~~~~~~~~d~v------~~ 205 (263)
T cd03320 136 GGWSLEEALAFL-EALAAGRIEYIEQPLPPDDLAELRRLA--AGVPIALDESLR-RLDDPLALAAAGALGAL------VL 205 (263)
T ss_pred CCCCHHHHHHHH-HhhcccCCceEECCCChHHHHHHHHhh--cCCCeeeCCccc-cccCHHHHHhcCCCCEE------EE
Confidence 357889999875 457899999999999999999999999 7 9999999865 48999999999999999 99
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
|++++||+|++++++++|+++|++++++++. |+.. ++.+|++.++..
T Consensus 206 k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~-es~ig~aa~~hlaa~~~~ 254 (263)
T cd03320 206 KPALLGGPRALLELAEEARARGIPAVVSSAL-ESSIGLGALAHLAAALPP 254 (263)
T ss_pred CchhcCCHHHHHHHHHHHHHcCCCEEEEcch-hhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999887554 6544 456677777643
No 38
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=99.96 E-value=5.2e-28 Score=243.30 Aligned_cols=257 Identities=15% Similarity=0.110 Sum_probs=183.3
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+..+.|+|+ ++|.+ ||||+.++ +.|.+++...+...+. .+.|.|+|+++.+.. +.
T Consensus 21 ~~~~iv~l~-~~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~-~l~~~l~~~~~~~~~-------~~- 75 (307)
T TIGR01927 21 REGLIVRLT-DEGRT----------GWGEIAPL-----PGFGTETLAEALDFCR-ALIEEITRGDIEAID-------DQ- 75 (307)
T ss_pred eeEEEEEEE-ECCcE----------EEEEeecC-----CCCCcccHHHHHHHHH-HHHHHhcccchhhcc-------cc-
Confidence 356999999 55984 99999876 4688999998888787 489999998875332 10
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
+ ..+++|||+||||+.||. ++|. ... .|.+++ ..| +. ....
T Consensus 76 ---~-----~~~~~aie~Al~Dl~~k~-~~~~-----------~~~--~~~~~l-~~~-------~~---------~~~~ 116 (307)
T TIGR01927 76 ---L-----PSVAFGFESALIELESGD-ELPP-----------ASN--YYVALL-PAG-------DP---------ALLL 116 (307)
T ss_pred ---C-----cHHHHHHHHHHHHHhcCC-CCCc-----------ccc--cceeec-cCC-------CH---------HHHH
Confidence 1 247899999999999987 2111 111 222222 111 00 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.+ .++|+.+| .|.| . .+.+++.+.++.||+++ |.+ .+| +|+|
T Consensus 117 ~~~~~--~~Gf~~~K----iKvG-------~-----~~~~~d~~~v~~vr~~~---g~~-~~l~vDaN------------ 162 (307)
T TIGR01927 117 LRSAK--AEGFRTFK----WKVG-------V-----GELAREGMLVNLLLEAL---PDK-AELRLDAN------------ 162 (307)
T ss_pred HHHHH--hCCCCEEE----EEeC-------C-----CChHHHHHHHHHHHHHc---CCC-CeEEEeCC------------
Confidence 22222 34454444 3433 1 11233455666666555 543 456 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.++++++.++ +++ |++.|||||++.+ +++++|++++ +||++||+.. ++++++++++.
T Consensus 163 -----------~~w~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~~--~~~~~l~~~~~~Pia~dEs~~-~~~d~~~~~~~ 227 (307)
T TIGR01927 163 -----------GGLSPDEAQQFLKA-LDPNLRGRIAFLEEPLPDA--DEMSAFSEATGTAIALDESLW-ELPQLADEYGP 227 (307)
T ss_pred -----------CCCCHHHHHHHHHh-cccccCCCceEEeCCCCCH--HHHHHHHHhCCCCEEeCCCcC-ChHHHHHHHhc
Confidence 36788999987654 687 8999999999876 8999999999 9999999865 49999999999
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
+++|++ ++|++++||+|++++++++|+++|+++|++|+. |+.. ++.+|||.+++.
T Consensus 228 ~~~d~i------~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~-es~i~~aa~~hlaa~~~~ 284 (307)
T TIGR01927 228 GWRGAL------VIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVF-ESSIALGQLARLAAKLSP 284 (307)
T ss_pred CCCceE------EECchhcCCHHHHHHHHHHHHHcCCCEEEECcc-chHHHHHHHHHHHHHhCC
Confidence 999999 999999999999999999999999999988765 6644 566788777653
No 39
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.95 E-value=2.3e-26 Score=274.01 Aligned_cols=299 Identities=15% Similarity=0.064 Sum_probs=197.7
Q ss_pred CceeeEEEEEEEe--------cCCC------CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHH-
Q 011677 44 PSVITKIKARQIL--------DSRG------IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNR- 108 (479)
Q Consensus 44 ~~~I~~I~~~~i~--------ds~g------~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~- 108 (479)
+|+|++|+.+.+- .+.| +..+.|+|+|++|.+ |+||+.++. +.+++...
T Consensus 930 ~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~----------G~GEa~pl~------~~~et~~~~ 993 (1655)
T PLN02980 930 LCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSV----------GFGEVAPLE------IHEEDLLDV 993 (1655)
T ss_pred cceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCE----------EEEecCCCC------CCccccccH
Confidence 6899999999883 2222 467999999999984 999987752 22333222
Q ss_pred --HHHHHH--------HHHHHhhcCCCCCCHHHHHHHHHhhhccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 109 --AVKNIN--------ERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 109 --av~~i~--------~~l~p~LiG~d~~~~~~id~~l~~~~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
.+..+. +.++|.|+|+++ +.++..|.... +.....|++|||+||||+.||..|+|||++|||
T Consensus 994 ~~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~~~-----~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg 1065 (1655)
T PLN02980 994 EEQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGIPP-----SSIFPSVRCGLEMAILNAIAVRHGSSLLNILDP 1065 (1655)
T ss_pred HHHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHcCCcHHHHhCC
Confidence 121111 345799999954 33455542111 112357999999999999999999999999987
Q ss_pred ccCCC---CcccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCC
Q 011677 179 LAGKT---NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGL 255 (479)
Q Consensus 179 ~~~~~---~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~ 255 (479)
..... ..+..+|++.++.+. . ......+++.+...++|+.+| .|.| ..
T Consensus 1066 ~~~~~~~~~~~~~v~v~~~~~~~-------~--------~~~~~~~~a~~~~~~Gf~~~K----lKvG-------~~--- 1116 (1655)
T PLN02980 1066 YQKDENGSEQSHSVQICALLDSN-------G--------SPLEVAYVARKLVEEGFSAIK----LKVG-------RR--- 1116 (1655)
T ss_pred CCCCcceeccccceeeeeccCCC-------C--------CHHHHHHHHHHHHHcCCCEEE----EecC-------CC---
Confidence 21000 001123333222110 0 011123344444444555554 3433 10
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceee
Q 011677 256 APNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSI 334 (479)
Q Consensus 256 ~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~i 334 (479)
.+.+++.+.++.||+++ |.+ .+| +|+| +.||.++++++.. .+++++|.||
T Consensus 1117 -~~~~~D~~~i~alRe~~---G~~-~~LrlDAN-----------------------~~ws~~~A~~~~~-~L~~~~i~~i 1167 (1655)
T PLN02980 1117 -VSPIQDAAVIQEVRKAV---GYQ-IELRADAN-----------------------RNWTYEEAIEFGS-LVKSCNLKYI 1167 (1655)
T ss_pred -CCHHHHHHHHHHHHHHc---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HHhhcCCCEE
Confidence 11223345555555544 654 466 9984 3678999998765 5789999999
Q ss_pred ecCCCccCHHHHHHHHhhh-hhhhcCCccccCH-----HHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHh
Q 011677 335 EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNP-----KRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLAN 408 (479)
Q Consensus 335 EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~-----~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~ 408 (479)
|||++ +.+++++|++++ +||++||+..+ + ..++..++.+ ++.+ ++|++++||++++++++++|+
T Consensus 1168 EqPl~--~~~~l~~l~~~~~iPIA~DEs~~~-~~~~~~~~~~~~i~~~-~~~i------~iK~~~~GGit~~~~ia~~A~ 1237 (1655)
T PLN02980 1168 EEPVQ--DEDDLIKFCEETGLPVALDETIDK-FEECPLRMLTKYTHPG-IVAV------VIKPSVVGGFENAALIARWAQ 1237 (1655)
T ss_pred ECCCC--CHHHHHHHHHhCCCCEEeCCCcCC-cccchHHHHHHHHHCC-CeEE------EeChhhhCCHHHHHHHHHHHH
Confidence 99997 578999999999 99999998654 3 3466777666 4589 999999999999999999999
Q ss_pred hCCCeEEEecCCCCCch--hHHHHhHhhc
Q 011677 409 DVPWGVVISHRSGETED--SFIADLSVGL 435 (479)
Q Consensus 409 ~~g~~~~v~h~~get~d--~~~~dlAv~~ 435 (479)
++|+.+|++++. |+.. ++.+|||..+
T Consensus 1238 ~~gi~~~~~s~~-es~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1238 QHGKMAVISAAY-ESGLGLSAYIQFASYL 1265 (1655)
T ss_pred HcCCeEEecCcc-cCHHHHHHHHHHHHhc
Confidence 999999887654 7655 4566776664
No 40
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=99.94 E-value=8.1e-26 Score=228.77 Aligned_cols=257 Identities=14% Similarity=0.130 Sum_probs=177.6
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+..++|+|+|++|++ |+||+.++ +.|.+++..++...++ .+.|.|.+++ +..+...+
T Consensus 28 ~~~~iV~l~~~~G~~----------G~GE~~p~-----p~~~~et~~~~~~~l~-~l~~~l~~~~------~~~~~~~~- 84 (320)
T PRK02714 28 REGIILRLTDETGKI----------GWGEIAPL-----PWFGSETLEEALAFCQ-QLPGEITPEQ------IFSIPDAL- 84 (320)
T ss_pred eEEEEEEEEeCCCCe----------EEEEecCC-----CCCCcccHHHHHHHHH-hccccCCHHH------HHhhhhcC-
Confidence 467999999999984 99999875 4688998888876665 4677775432 22221111
Q ss_pred ccCCCCchhhhHHHHHHHHHHH-HHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCc
Q 011677 141 KTEKKGELGANAILAVSIAACK-AGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASS 219 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~d-a~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~ 219 (479)
..++.|+++| || +.++..+ . ...++|....++. ....
T Consensus 85 ---------~~~~~aie~A-~d~~~~~~~~--------~------~~~~~~~~~~i~~------------------~~~~ 122 (320)
T PRK02714 85 ---------PACQFGFESA-LENESGSRSN--------V------TLNPLSYSALLPA------------------GEAA 122 (320)
T ss_pred ---------CHHHHHHHHH-HHHHhccccc--------C------CcCCCceeeecCC------------------CHHH
Confidence 2479999999 66 4333211 1 1223444433311 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCcee
Q 011677 220 FGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKY 298 (479)
Q Consensus 220 ~~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y 298 (479)
.+++.+...++|+.+| .|.| . .+.+++.+.++.||+++ |.+ ..+ +|+|
T Consensus 123 ~~~a~~~~~~G~~~~K----vKvG-------~-----~~~~~d~~~v~air~~~---g~~-~~l~vDaN----------- 171 (320)
T PRK02714 123 LQQWQTLWQQGYRTFK----WKIG-------V-----DPLEQELKIFEQLLERL---PAG-AKLRLDAN----------- 171 (320)
T ss_pred HHHHHHHHHcCCCEEE----EEEC-------C-----CChHHHHHHHHHHHHhc---CCC-CEEEEECC-----------
Confidence 4455555555665555 4533 1 11223345555555544 644 456 9984
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhc
Q 011677 299 DLDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATL 374 (479)
Q Consensus 299 ~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~ 374 (479)
+.||.++++++... +++ |++.|||||++++|++++++|++++ +||++||+.. ++++++++++
T Consensus 172 ------------~~w~~~~A~~~~~~-l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~~Pia~DEs~~-~~~d~~~~~~ 237 (320)
T PRK02714 172 ------------GGLSLEEAKRWLQL-CDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQTPIALDESVA-NLAQLQQCYQ 237 (320)
T ss_pred ------------CCCCHHHHHHHHHH-HhhccCCCccEEECCCCcccHHHHHHHHHhCCCCEEECCccC-CHHHHHHHHH
Confidence 36788999987544 676 8999999999999999999999999 9999999864 5999999999
Q ss_pred CCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcCC
Q 011677 375 IPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLAS 437 (479)
Q Consensus 375 ~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~~ 437 (479)
.+++|++ ++|++++||+++++ ++|+++|+++|++++. |+.. ++.+|||.++..
T Consensus 238 ~~a~d~v------~ik~~k~GGi~~~~---~~a~~~gi~~~~~~~~-es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 238 QGWRGIF------VIKPAIAGSPSRLR---QFCQQHPLDAVFSSVF-ETAIGRKAALALAAELSR 292 (320)
T ss_pred cCCCCEE------EEcchhcCCHHHHH---HHHHHhCCCEEEEech-hhHHHHHHHHHHHHhCCC
Confidence 9999999 99999999999665 6788999999988764 6655 456677777653
No 41
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=99.93 E-value=1.8e-25 Score=226.27 Aligned_cols=251 Identities=17% Similarity=0.104 Sum_probs=176.0
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
+.++.|+|+ ++|++ ||||+.++ +.|.+++..++...+.+.+.|.+. .++.+.. .
T Consensus 27 ~~~viV~l~-d~G~~----------G~GE~~p~-----~~~~~et~~~~~~~l~~~~~~~~~-~~~~~~~-------~-- 80 (322)
T PRK05105 27 RDGLVVQLR-EGERE----------GWGEIAPL-----PGFSQETLEEAQEALLAWLNNWLA-GDCDDEL-------S-- 80 (322)
T ss_pred eeeEEEEEE-ECCcE----------EEEEeCCC-----CCCCccCHHHHHHHHHHHHHHhhc-Ccccccc-------c--
Confidence 467999996 88984 99999876 458899999998888887887654 4443310 1
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCcccccceEEeecCCccCCCcccccceeeccCCCCcH
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSF 220 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~ 220 (479)
....++.++++|+||+.||..+.|+|+ ..++ +-| +. ....
T Consensus 81 -------~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------~~~l------~~~-------~~---------~~~~ 120 (322)
T PRK05105 81 -------QYPSVAFGLSCALAELAGTLPQAANYR-----------TAPL------CYG-------DP---------DELI 120 (322)
T ss_pred -------cCcHHHHHHHHHHHHhcCCCCCCCCcc-----------eeee------ecC-------CH---------HHHH
Confidence 113578999999999999988888752 1111 101 00 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCcccCCCCCCCCCCCchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceee
Q 011677 221 GEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYD 299 (479)
Q Consensus 221 ~ea~~~~~e~~~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~ 299 (479)
+++.++ ++|+.+| .|.|. .+.+++.+.++.||+++ + + ..+ +|+|
T Consensus 121 ~~a~~~--~Gf~~~K----vKvG~------------~~~~~d~~~i~~vr~~~---~-~-~~l~vDaN------------ 165 (322)
T PRK05105 121 LKLADM--PGEKVAK----VKVGL------------YEAVRDGMLVNLLLEAI---P-D-LKLRLDAN------------ 165 (322)
T ss_pred HHHHHc--CCCCEEE----EEECC------------CCHHHHHHHHHHHHHhC---C-C-CeEEEECC------------
Confidence 333332 4565555 45331 11223445555555543 2 2 356 9984
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhh---CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 300 LDFKSPNKSGQNFKSGEDMIEMYKELCAD---YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 300 ~~~~~~~~~~~~~~t~~e~i~~~~~ll~~---~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
+.||.++++++.++ +++ +++.|||||++. .+++++|++++ +||+.||+..+ ++ .+..+ .
T Consensus 166 -----------~~w~~~~A~~~~~~-l~~~~~~~i~~iEqP~~~--~~~~~~l~~~~~~PIa~DEs~~~-~~-~~~~~-~ 228 (322)
T PRK05105 166 -----------RGWTLEKAQQFAKY-VPPDYRHRIAFLEEPCKT--PDDSRAFARATGIAIAWDESLRE-PD-FQFEA-E 228 (322)
T ss_pred -----------CCCCHHHHHHHHHH-hhhhcCCCccEEECCCCC--HHHHHHHHHhCCCCEEECCCCCc-hh-hhhhh-c
Confidence 36789999987654 677 999999999964 56789999999 99999998754 54 44444 6
Q ss_pred CCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 376 PLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 376 ~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
+++|++ ++|++++||+|++++++++|+++|++++++++. |+.. ++.+|+|.+++
T Consensus 229 ~~~d~i------~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~-es~i~~aa~~hla~~~~ 284 (322)
T PRK05105 229 PGVRAI------VIKPTLTGSLEKCQELIEQAHALGLRAVISSSI-ESSLGLTQLARLAAWLT 284 (322)
T ss_pred CCCCEE------EECccccCCHHHHHHHHHHHHHcCCcEEEECch-hHHHHHHHHHHHHHhcC
Confidence 789999 999999999999999999999999999887654 7755 45567776763
No 42
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=99.73 E-value=3.2e-17 Score=165.80 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=108.4
Q ss_pred CchHHHHHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHH-hhCCceeeecC
Q 011677 260 SSIREGLDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC-ADYPIVSIEDP 337 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll-~~~~i~~iEdP 337 (479)
+++.+.++.||+++ |.+ ..| +|+| +.||.++++++.+. + ++++|.|||||
T Consensus 118 ~~Di~rv~avRe~l---Gpd-~~LrvDAN-----------------------~~ws~~~Ai~~~~~-L~e~~~l~~iEqP 169 (327)
T PRK02901 118 ADDVARVNAVRDAL---GPD-GRVRVDAN-----------------------GGWSVDEAVAAARA-LDADGPLEYVEQP 169 (327)
T ss_pred HHHHHHHHHHHHhc---CCC-CEEEEECC-----------------------CCCCHHHHHHHHHH-hhhccCceEEecC
Confidence 34455555555555 755 566 9984 35789999988655 6 67999999999
Q ss_pred CCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 338 FDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 338 ~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
++. ++++++|++++ +||++||+.. +.+++.++++.+++|++ ++|++++||||++++ +|+++|+++++
T Consensus 170 ~~~--~~~la~Lr~~~~vPIA~DEs~~-~~~d~~~l~~~~a~dvi------~ik~~~~GGit~~lk---iA~~~gi~v~v 237 (327)
T PRK02901 170 CAT--VEELAELRRRVGVPIAADESIR-RAEDPLRVARAGAADVA------VLKVAPLGGVRAALD---IAEQIGLPVVV 237 (327)
T ss_pred CCC--HHHHHHHHHhCCCCEEeCCCCC-CHHHHHHHHHcCCCCEE------EeCcchhCCHHHHHH---HHHHcCCcEEE
Confidence 974 99999999999 9999999765 59999999999999999 999999999999988 57899999988
Q ss_pred ecCCCCCchh--HHHHhHhhcC
Q 011677 417 SHRSGETEDS--FIADLSVGLA 436 (479)
Q Consensus 417 ~h~~get~d~--~~~dlAv~~~ 436 (479)
++ +-||..+ +.+|+|.++.
T Consensus 238 ~s-~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 238 SS-ALDTSVGIAAGLALAAALP 258 (327)
T ss_pred eC-CcccHHHHHHHHHHHHhCC
Confidence 64 4476554 4456666654
No 43
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.57 E-value=3.3e-14 Score=123.02 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=76.6
Q ss_pred CceEEEEEEeCCCceeeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhh
Q 011677 61 IPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLD 140 (479)
Q Consensus 61 ~~~v~V~v~t~~G~~~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~ 140 (479)
++.+.|+|+|++|++ |+||+.... + +.......+.+.+.|.|+|+++.+.+.+++.+.+..
T Consensus 26 ~~~v~V~l~t~~G~~----------G~Ge~~~~~------~---~~~~~~~~~~~~l~~~l~g~~~~~~~~~~~~~~~~~ 86 (117)
T PF02746_consen 26 REFVLVRLETDDGVV----------GWGEAFPSP------G---TAETVASALEDYLAPLLIGQDPDDIEDIWQELYRLI 86 (117)
T ss_dssp EEEEEEEEEETTSEE----------EEEEEESSS------S---SHHHHHHHHHHTHHHHHTTSBTTGHHHHHHHHHHHT
T ss_pred eEEEEEEEEECCCCE----------EEEEeeCCc------c---hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 457999999999994 999987632 1 345566677888999999999999999998887532
Q ss_pred ccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHh
Q 011677 141 KTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIA 177 (479)
Q Consensus 141 ~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLg 177 (479)
. + ...|++|||+||||+.||..|+|||++||
T Consensus 87 ~----~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 87 K----G--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp S----S--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred c----c--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 1 1 36799999999999999999999999997
No 44
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.54 E-value=7e-13 Score=127.05 Aligned_cols=295 Identities=17% Similarity=0.144 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhh-hccCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhcccCCCCc
Q 011677 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDL-DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNL 185 (479)
Q Consensus 107 ~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~-~~~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg~~~~~~~ 185 (479)
+.....++.+++|+|+|+|+.-.-.-......+ ++ ..+......+||.||.|++|...+..--+.+....+..+.
T Consensus 87 ~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~----~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~ 162 (410)
T COG3799 87 EHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDG----NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRV 162 (410)
T ss_pred hhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccC----CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhCCCCc
Confidence 455667899999999999975432111222222 22 2355778899999999999999988877777665445555
Q ss_pred ccccceEEeecCCccCCCcccccceeeccCCCCcHHHHHHHHHHHH----HHHHHHHHhhhCCCCcccCCCCCCCCCCCc
Q 011677 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY----HHLKAVIAEKYGAHGCNVGEDGGLAPNISS 261 (479)
Q Consensus 186 ~~Pvp~~~~i~GG~~~~~~l~~~e~~i~p~~~~~~~ea~~~~~e~~----~~lk~~l~~K~G~~~~~vg~~G~~~~~~~~ 261 (479)
.-|+|+|.- +| ......+-+|..++. +.+-+.. .++| ++-.+
T Consensus 163 te~vP~fgQ-SG-------------------d~R~~~vdkMiLK~vdVLPHgLiNsv-e~~G-------------~dG~~ 208 (410)
T COG3799 163 TESVPLFGQ-SG-------------------DDRYIAVDKMILKGVDVLPHGLINSV-EELG-------------FDGEK 208 (410)
T ss_pred ccccccccc-Cc-------------------chhhhhHHHHHHhhcCccchhhhhhH-HHhC-------------CchHH
Confidence 667887742 11 000111111110000 0000000 1222 22235
Q ss_pred hHHHHHHHHHHHHhc---CCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC--ceeee
Q 011677 262 IREGLDLVKEAINRT---GIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP--IVSIE 335 (479)
Q Consensus 262 ~~~~l~~v~~ai~~~---g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~--i~~iE 335 (479)
..|.++.+.+.+... ||. ..+ +|+-.- --..| .+++....+|.+++-++-+ ..+||
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYh-P~lH~DVYG~--------iGe~f---------g~dp~r~a~yi~~l~~~a~~~pL~IE 270 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYH-PTLHIDVYGT--------IGEIF---------GMDPLRCAQYIASLEKEAQGLPLYIE 270 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCC-ccEEEeehhh--------hHHHh---------CCCHHHHHHHHHHHHhhCCCCceeee
Confidence 677788887776654 454 234 776211 00001 3466667777777554433 66899
Q ss_pred cCCC----ccCHHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHH
Q 011677 336 DPFD----KEDWEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVK 405 (479)
Q Consensus 336 dP~~----~~D~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~ 405 (479)
-|++ +..++.++++++.+ +.|+.||. +.+.++++...+.++|+.| |||..-+|+|-+..+++.
T Consensus 271 gP~DaGs~~aQI~~~a~i~~~L~~~Gs~v~IVaDEw-Cnt~~Di~~F~dA~a~h~V------QiKTPDvGsi~~~~rAvl 343 (410)
T COG3799 271 GPVDAGSKPAQIRLLAAITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAAACHMV------QIKTPDVGSIHNIVRAVL 343 (410)
T ss_pred ccccCCCCHHHHHHHHHHHHHHhhcCCcceEeehhh-cccHHHHHHHHhhccccEE------EecCCCcchHHHHHHHHh
Confidence 9997 45678888888866 78999995 6679999999999999999 999999999999999999
Q ss_pred HHhhCCCeEEEecCCCCCchh--HHHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHh
Q 011677 406 LANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464 (479)
Q Consensus 406 ~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l 464 (479)
+|..+.+...+|..+.||.-+ ..+|.|+++.+-++ |||.-...---...|++-|.-.-|
T Consensus 344 yC~~~~~~AYvGGtCnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmnRtlA~l 406 (410)
T COG3799 344 YCNSHSMEAYVGGTCNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMNRTLALL 406 (410)
T ss_pred hhccCccceeecccccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999998665 67899999888666 899877666667788887765544
No 45
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.51 E-value=3.6e-13 Score=124.90 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHHhcCCCC--Cce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh-CC-ceee
Q 011677 260 SSIREGLDLVKEAINRTGIPS--SKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD-YP-IVSI 334 (479)
Q Consensus 260 ~~~~~~l~~v~~ai~~~g~~~--~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~-~~-i~~i 334 (479)
+...+.++.|++.+...|... ..+ +|+-+. --.-|. -+.+.+++|+.++.+. .| -..|
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGt--------iG~~f~---------~d~~~~adYl~~l~~aA~P~~L~i 109 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGT--------IGLAFD---------NDPDRMADYLAELEEAAAPFKLRI 109 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TTH--------HHHHTT---------T-HHHHHHHHHHHHHHHTTS-EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccch--------HHHHhC---------CCHHHHHHHHHHHHHhcCCCeeee
Confidence 456788899999988765431 124 887332 111121 1678899988876543 45 5689
Q ss_pred ecCCCccC----HHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHH
Q 011677 335 EDPFDKED----WEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVV 404 (479)
Q Consensus 335 EdP~~~~D----~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~ 404 (479)
|.|++..+ ++.+++||+.+ +.|++|| ++.+.++++.+.+.+++|.| |||..-.|||.++++++
T Consensus 110 EgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADE-WCNT~eDI~~F~da~A~dmV------QIKtPDLGgi~ntieAv 182 (248)
T PF07476_consen 110 EGPMDAGSREAQIEALAELREELDRRGINVEIVADE-WCNTLEDIREFADAKAADMV------QIKTPDLGGINNTIEAV 182 (248)
T ss_dssp E-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-T-T--SHHHHHHHHHTT-SSEE------EE-GGGGSSTHHHHHHH
T ss_pred eCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeeh-hcCCHHHHHHHHhcCCcCEE------EecCCCccchhhHHHHH
Confidence 99998655 57889998877 7799999 56779999999999999999 99999999999999999
Q ss_pred HHHhhCCCeEEEecCCCCCchh--HHHHhHhhcCCCCc--ccCCCCchhHHHHhHHHHHHHHHh
Q 011677 405 KLANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464 (479)
Q Consensus 405 ~~A~~~g~~~~v~h~~get~d~--~~~dlAv~~~~~~i--k~G~~~~~er~~kyn~ll~ie~~l 464 (479)
-+|+++|+...+|..+.||+.+ ..+|+|+|+++.|+ |||.-...-=+..+|++.|+-..+
T Consensus 183 lyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~p~q~LaKPGMG~DEG~mIV~NEM~R~lal~ 246 (248)
T PF07476_consen 183 LYCKEHGVGAYLGGTCNETDRSARVCVHVALATRPDQMLAKPGMGVDEGYMIVTNEMNRTLALL 246 (248)
T ss_dssp HHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT-SEEE--SSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceeecccccccchhHHHHHHHHHhcCHHHHhcCCCCCccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999775 78999999999988 999988888889999999987654
No 46
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=98.97 E-value=1.7e-09 Score=83.96 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeecCCCccCHH
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~ 344 (479)
++.||+++ |.+ ..+ +|+| +.||.++++++.. .+++| .|||||++++|++
T Consensus 2 i~avr~~~---g~~-~~l~vDan-----------------------~~~~~~~a~~~~~-~l~~~--~~iEeP~~~~d~~ 51 (67)
T PF01188_consen 2 IRAVREAV---GPD-IDLMVDAN-----------------------QAWTLEEAIRLAR-ALEDY--EWIEEPLPPDDLD 51 (67)
T ss_dssp HHHHHHHH---STT-SEEEEE-T-----------------------TBBSHHHHHHHHH-HHGGG--SEEESSSSTTSHH
T ss_pred HHHHHHhh---CCC-CeEEEECC-----------------------CCCCHHHHHHHHH-HcChh--heeecCCCCCCHH
Confidence 55666666 644 456 9984 3568899998765 47775 9999999999999
Q ss_pred HHHHHHhhh-hhhhcC
Q 011677 345 HTKSVLQIC-QQVVGD 359 (479)
Q Consensus 345 g~~~L~~~~-~~I~gd 359 (479)
++++|++++ +||++|
T Consensus 52 ~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 52 GLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHCSSEEEES
T ss_pred HHHHHHHhCCCCEEeC
Confidence 999999999 999876
No 47
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=98.79 E-value=7.5e-09 Score=88.46 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCch--hHHHHhHhhcC
Q 011677 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETED--SFIADLSVGLA 436 (479)
Q Consensus 359 de~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d--~~~~dlAv~~~ 436 (479)
||+. .++++++++++.+++|++ |+|++++||||++++++++|+++|+++++ |.. ++.. ++.+||+.++.
T Consensus 1 gE~~-~~~~~~~~li~~~a~d~~------~~~~~~~GGit~~~~i~~~A~~~gi~~~~-h~~-~~~i~~aa~~hlaaa~~ 71 (111)
T PF13378_consen 1 GESL-FSLHDFRRLIEAGAVDIV------QIDPTRCGGITEALRIAALAEAHGIPVMP-HSM-ESGIGLAASLHLAAALP 71 (111)
T ss_dssp STTS-SSHHHHHHHHHTTSCSEE------EEBHHHHTSHHHHHHHHHHHHHTT-EEEE-BSS-SSHHHHHHHHHHHHTST
T ss_pred CCCC-CCHHHHHHHHHcCCCCEE------EeCchhcCCHHHHHHHHHHHHHhCCCEEe-cCC-CCcHHHHHHHHHHHhcC
Confidence 5655 459999999999999999 99999999999999999999999999866 545 6644 45566666654
No 48
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=97.81 E-value=0.00027 Score=66.65 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCCCCceeecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHh-hC--CceeeecCCC
Q 011677 263 REGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCA-DY--PIVSIEDPFD 339 (479)
Q Consensus 263 ~~~l~~v~~ai~~~g~~~~~iiD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~-~~--~i~~iEdP~~ 339 (479)
-..+.++-+|+.+.-+. +|+| ..||+..+..| .+.++ +| .|.|+|+|..
T Consensus 144 GmivnllLEaiPDL~LR----LDAN-----------------------RaWtp~Ka~~F-AkyV~p~~R~RIaFLEEPCk 195 (321)
T COG1441 144 GMIVNLLLEAIPDLHLR----LDAN-----------------------RAWTPLKAQQF-AKYVNPDYRSRIAFLEEPCK 195 (321)
T ss_pred chHHHHHHHhCccceee----eccc-----------------------ccCChHHHHHH-HHhcCHHHHHHHHHHhcccC
Confidence 44566777888433333 8883 25666655544 33343 24 4999999986
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
-- ..-+.+...+ +-|+-||+... .+|.. -.+..+..| .||+.-+|.+....+.++-|++.|+..+||+
T Consensus 196 t~--aeSr~Fa~eTgIAIAWDEs~re--adF~~-e~e~gv~av------VIKPTL~GSl~r~~eli~qAh~lGl~AVISS 264 (321)
T COG1441 196 TR--AESRAFARETGIAIAWDESLRE--ADFAF-EAEPGVRAV------VIKPTLTGSLQRVRELVQQAHALGLTAVISS 264 (321)
T ss_pred Ch--HHHHHHHHhcCeeEeecchhcc--ccccc-ccCCCceEE------EecccchhhHHHHHHHHHHHHhcCceeEeec
Confidence 32 2345666778 99999997532 22322 234568899 9999999999999999999999999998877
Q ss_pred CCCCC--chhHHHHhH
Q 011677 419 RSGET--EDSFIADLS 432 (479)
Q Consensus 419 ~~get--~d~~~~dlA 432 (479)
.. |+ .-+.++-||
T Consensus 265 Si-ESSLGLtQLARiA 279 (321)
T COG1441 265 SI-ESSLGLTQLARIA 279 (321)
T ss_pred hh-hhhcCHHHHHHHH
Confidence 43 43 223444444
No 49
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=97.71 E-value=3.2e-05 Score=52.85 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=28.0
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 10 HMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 10 ~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
|+++.+|+++..+++.++|.||+.|.++||.++
T Consensus 1 ~~l~~lL~~~~~~vl~~qP~Di~~F~a~yF~~L 33 (38)
T PF02197_consen 1 HGLQELLKEFTREVLREQPDDILQFAADYFEKL 33 (38)
T ss_dssp TTHHHHHHHHHHHHHHH--S-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999764
No 50
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=97.59 E-value=9.3e-05 Score=51.70 Aligned_cols=38 Identities=16% Similarity=0.467 Sum_probs=32.5
Q ss_pred HHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 4 QEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 4 ~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
.+|++++ |-..|.++|-+++.+||+||+.|||+|+.+.
T Consensus 3 r~YL~~~-v~p~L~~gL~~l~~~rP~DPi~~La~~Ll~~ 40 (42)
T PF05186_consen 3 RQYLKET-VGPVLTEGLAELAKERPEDPIEFLAEYLLKH 40 (42)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHH--SSHHHHHHHHHHHH
T ss_pred HHHHHHH-hHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5799886 8899999999999999999999999999764
No 51
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.24 E-value=0.0026 Score=56.60 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=64.2
Q ss_pred eEEEEEEeCCCce-eeecCCCCCCCceeeeeeccCCCCccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhhhc
Q 011677 63 TVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDK 141 (479)
Q Consensus 63 ~v~V~v~t~~G~~-~~~~ps~~~~G~~Ea~~~~d~~~~~y~g~~~~~av~~i~~~l~p~LiG~d~~~~~~id~~l~~~~~ 141 (479)
++.|.+..++|-+ .+-+-..--.|-|- || |.|. ...-+..|++.++|.|+|+|..+..+.-+.+..+.
T Consensus 52 sisV~l~L~dG~va~GDCaaVQYSGagG----RD---PLF~---a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~- 120 (159)
T PF05034_consen 52 SISVMLVLEDGQVAYGDCAAVQYSGAGG----RD---PLFL---AEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELV- 120 (159)
T ss_dssp EEEEEEEETTS-EEEEEE---TTTTSTT----S----S------HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-E-
T ss_pred EEEEEEEeCCCCEEEeeehheeecccCC----CC---Cccc---HHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcc-
Confidence 6889999999976 22111100112211 11 2333 45667778999999999999999888777777651
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHhcCchhHHHHhc
Q 011677 142 TEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIAD 178 (479)
Q Consensus 142 ~~~~~~~g~~A~~AvsiAl~da~ak~~g~PLy~lLgg 178 (479)
+..++......+||.||.|+.|+..+.-.-+.|..
T Consensus 121 --~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi~~ 155 (159)
T PF05034_consen 121 --DGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVIAE 155 (159)
T ss_dssp --TTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHHHH
T ss_pred --cCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHHHH
Confidence 23357778899999999999999999887777654
No 52
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.22 E-value=0.0055 Score=62.72 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-----------cCC-CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-----------DPF-DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-----------dP~-~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
.++.++++++. +.++++++.||| .|+ +..+.+..++|++.+ +||++.+.. +++++++++++.+.+
T Consensus 237 g~~~~e~~~ia-~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i-~t~~~a~~~l~~g~a 314 (336)
T cd02932 237 GWDLEDSVELA-KALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLI-TDPEQAEAILESGRA 314 (336)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCC-CCHHHHHHHHHcCCC
Confidence 56788998765 557889999999 477 455678889999999 999988865 459999999999999
Q ss_pred cee
Q 011677 379 MLF 381 (479)
Q Consensus 379 d~v 381 (479)
|+|
T Consensus 315 D~V 317 (336)
T cd02932 315 DLV 317 (336)
T ss_pred Cee
Confidence 999
No 53
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=96.99 E-value=0.00082 Score=45.94 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhc
Q 011677 10 HMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKA 42 (479)
Q Consensus 10 ~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~ 42 (479)
|+++..|++...+++..+|.||+.|.++||.++
T Consensus 1 ~~~~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL 33 (38)
T smart00394 1 HGLQALLEDLTVEVLRAQPSDLVQFAADYFEKL 33 (38)
T ss_pred CcHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 578899999999999999999999999999765
No 54
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.60 E-value=0.0055 Score=62.82 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCCCc---c---------CHHHHHHHHhhh-hhhhcCCccccCHHHHHH
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPFDK---E---------DWEHTKSVLQIC-QQVVGDDLLMSNPKRIER 371 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~~~---~---------D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~ 371 (479)
.+|.++++++. +.++++++.||| +|... . .++..+++++.+ +||++++.. ++++++++
T Consensus 232 g~~~eea~~ia-~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i-~t~~~a~~ 309 (338)
T cd04733 232 GFTEEDALEVV-EALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGF-RTRAAMEQ 309 (338)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCC-CCHHHHHH
Confidence 56889999775 557899999999 55532 1 135556888888 999988865 56999999
Q ss_pred HhcCCCCcee
Q 011677 372 ATLIPLAMLF 381 (479)
Q Consensus 372 ~i~~~a~d~v 381 (479)
+++++.+|+|
T Consensus 310 ~l~~g~aD~V 319 (338)
T cd04733 310 ALASGAVDGI 319 (338)
T ss_pred HHHcCCCCee
Confidence 9999999999
No 55
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.79 E-value=0.18 Score=51.21 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCCC---------ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPFD---------KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATL 374 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~~---------~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~ 374 (479)
.++.++++++. +.++++++.||+ +|.. ..+++..+.+++.+ +||++.... +++++++++++
T Consensus 224 g~~~~e~~~la-~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi-~t~~~a~~~l~ 301 (327)
T cd02803 224 GLTLEEAIEIA-KALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGI-RDPEVAEEILA 301 (327)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCC-CCHHHHHHHHH
Confidence 46788888765 557899999994 6543 45667778888888 998888765 45999999999
Q ss_pred CCCCcee
Q 011677 375 IPLAMLF 381 (479)
Q Consensus 375 ~~a~d~v 381 (479)
.+.+|.|
T Consensus 302 ~g~aD~V 308 (327)
T cd02803 302 EGKADLV 308 (327)
T ss_pred CCCCCee
Confidence 9899998
No 56
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.26 E-value=0.043 Score=56.59 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhhCCc-------eeeecCCCccC--------HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcC
Q 011677 312 FKSGEDMIEMYKELCADYPI-------VSIEDPFDKED--------WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLI 375 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i-------~~iEdP~~~~D--------~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~ 375 (479)
.++.++++++. +.++++++ .|.|+|.+..+ .+..+++++.+ +||++.+.. +++++++++++.
T Consensus 220 g~~~~e~~~i~-~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i-~~~~~a~~~i~~ 297 (353)
T cd02930 220 GSTWEEVVALA-KALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRI-NTPEVAERLLAD 297 (353)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCC-CCHHHHHHHHHC
Confidence 56888998765 55788885 34577765432 34457888888 999888765 459999999999
Q ss_pred CCCcee
Q 011677 376 PLAMLF 381 (479)
Q Consensus 376 ~a~d~v 381 (479)
+.+|+|
T Consensus 298 g~~D~V 303 (353)
T cd02930 298 GDADMV 303 (353)
T ss_pred CCCChh
Confidence 999998
No 57
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=94.98 E-value=0.16 Score=51.68 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=61.8
Q ss_pred HHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc-HHHHHHHHHHHhhCCCeEEEecCC
Q 011677 343 WEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT-VTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 343 ~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg-itea~~i~~~A~~~g~~~~v~h~~ 420 (479)
-+.+.++++++ +|+++|=.| +++.....++.+ +|.+ .|.|+.+|. -....++++.|+++|+++-+|-++
T Consensus 69 a~al~~I~~~~~iPlvADIHF--d~~lAl~a~~~G-~~~i------RINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 69 AAALPEIKKQLPVPLVADIHF--DYRLALAAAEAG-ADAL------RINPGNIGKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred HHhHHHHHHcCCCCEEEecCC--CHHHHHHHHHhC-CCEE------EECCCCCCchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 35567778888 999999764 577666666544 9999 999999999 678888999999999999999998
Q ss_pred CCCchhH
Q 011677 421 GETEDSF 427 (479)
Q Consensus 421 get~d~~ 427 (479)
|.-+..+
T Consensus 140 GSL~~~~ 146 (360)
T PRK00366 140 GSLEKDL 146 (360)
T ss_pred ccChHHH
Confidence 8765443
No 58
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=94.37 E-value=0.24 Score=49.99 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=58.7
Q ss_pred HHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCC
Q 011677 344 EHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGE 422 (479)
Q Consensus 344 ~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ge 422 (479)
+.+.++++.+ +|+++|=.| +.......+ +..+|.+ .|.|..+|.-....++++.|+++|+++-+|-++|.
T Consensus 62 ~al~~I~~~~~iPlVADIHF--d~~lAl~a~-~~g~dki------RINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 62 AAFEAIKEGTNVPLVADIHF--DYRLAALAM-AKGVAKV------RINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred HhHHHHHhCCCCCEEEeeCC--CcHHHHHHH-HhccCeE------EECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 4455666778 999999765 344344444 3459999 99999999999999999999999999999999887
Q ss_pred Cchh
Q 011677 423 TEDS 426 (479)
Q Consensus 423 t~d~ 426 (479)
-+..
T Consensus 133 L~~~ 136 (346)
T TIGR00612 133 LERR 136 (346)
T ss_pred CcHH
Confidence 6543
No 59
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=92.13 E-value=0.37 Score=48.44 Aligned_cols=74 Identities=22% Similarity=0.107 Sum_probs=60.6
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
+-+.+.++++++ +|+++|=.| +++.+...++.+ +|.+ .|.|+.+|--....++++.|+.+|+++-+|-++
T Consensus 62 ~A~A~~~Ik~~~~vPLVaDiHf--~~rla~~~~~~g-~~k~------RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 62 AAEALKEIKQRLNVPLVADIHF--DYRLALEAAECG-VDKV------RINPGNIGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred HHHHHHHHHHhCCCCEEEEeec--cHHHHHHhhhcC-cceE------EECCcccCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 345677888899 999999765 456555555544 9999 999999999888999999999999999999988
Q ss_pred CCCc
Q 011677 421 GETE 424 (479)
Q Consensus 421 get~ 424 (479)
|..+
T Consensus 133 GSLe 136 (361)
T COG0821 133 GSLE 136 (361)
T ss_pred Cchh
Confidence 7643
No 60
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.97 E-value=0.6 Score=44.69 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCceee-------ec-CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 317 DMIEMYKELCADYPIVSI-------ED-PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~i-------Ed-P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
++.++. +.+++.++.+| ++ +..+.+++..+++++.. +||+++... ++++++.++++.+.+|.|
T Consensus 139 ~~~~~~-~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi-~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 139 ETLELA-KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDI-FSLEDALRCLEQTGVDGV 210 (231)
T ss_pred HHHHHH-HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHHHhcCCCEE
Confidence 566554 45788899899 66 66677999999999988 999988864 569999999988788988
No 61
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=87.75 E-value=2.2 Score=40.46 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++++.. +.+-+.++..||=+++-.+. +..++++++. +.|-++- +.++++++++++.++-=+| -+-
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT--Vl~~~~a~~a~~aGA~Fiv------sP~ 88 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT--VLNPEQLRQAVDAGAQFIV------SPG 88 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe--CCCHHHHHHHHHcCCCEEE------CCC
Confidence 678888765 45678899999999975544 6678888776 5444553 4569999999988744334 222
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
. -.++++.|+++|+.++.|.++. |+ +.-|...|+..+|
T Consensus 89 ~--------~~~v~~~~~~~~i~~iPG~~Tp-tE----i~~A~~~Ga~~vK 126 (204)
T TIGR01182 89 L--------TPELAKHAQDHGIPIIPGVATP-SE----IMLALELGITALK 126 (204)
T ss_pred C--------CHHHHHHHHHcCCcEECCCCCH-HH----HHHHHHCCCCEEE
Confidence 2 1277888999999987766542 11 2334445666666
No 62
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=87.36 E-value=11 Score=36.99 Aligned_cols=92 Identities=15% Similarity=0.266 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc
Q 011677 317 DMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT 396 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg 396 (479)
+-++.+.+.+++++|.++=+|+++.+.+-..+... +++|.+.+. +|..-++.+-.. --.| ++|-++..+
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vd-ilqIgs~~~--~n~~LL~~va~t--gkPV------ilk~G~~~t 134 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLD-VIQVGARNM--QNFEFLKTLSHI--DKPI------LFKRGLMAT 134 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCC-EEEECcccc--cCHHHHHHHHcc--CCeE------EEeCCCCCC
Confidence 45556778889999999999999888777766311 166767764 455655555433 4678 999999999
Q ss_pred HHHHHHHHHHHhhCCC-eEEEecC
Q 011677 397 VTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 397 itea~~i~~~A~~~g~-~~~v~h~ 419 (479)
+.|++.+++...+.|- ++++-||
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~eR 158 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILCER 158 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcc
Confidence 9999999999888777 5778774
No 63
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=85.82 E-value=0.86 Score=46.49 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=52.7
Q ss_pred HHHHHHHhh-----h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccc--------cc-HHHHHHHHHHHh
Q 011677 344 EHTKSVLQI-----C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQI--------GT-VTEAIEVVKLAN 408 (479)
Q Consensus 344 ~g~~~L~~~-----~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~--------Gg-itea~~i~~~A~ 408 (479)
+.+++++++ + +|+++|=.| +++.....++. +|.+ .|.|+.+ |. -....++++.|+
T Consensus 59 ~al~~I~~~l~~~g~~iPlVADIHF--d~~lAl~a~~~--v~ki------RINPGNi~~~~~~~~g~~~~~~~~vv~~ak 128 (359)
T PF04551_consen 59 EALKEIKKRLRALGSPIPLVADIHF--DYRLALEAIEA--VDKI------RINPGNIVDEFQEELGSIREKVKEVVEAAK 128 (359)
T ss_dssp HHHHHHHHHHHCTT-SS-EEEEEST--TCHHHHHHHHC---SEE------EE-TTTSS----SS-SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCeeeecCC--CHHHHHHHHHH--hCeE------EECCCcccccccccccchHHHHHHHHHHHH
Confidence 344555555 5 999999764 46767677665 9999 9999999 88 677788999999
Q ss_pred hCCCeEEEecCCCCCchh
Q 011677 409 DVPWGVVISHRSGETEDS 426 (479)
Q Consensus 409 ~~g~~~~v~h~~get~d~ 426 (479)
++|+++-+|-++|.-+..
T Consensus 129 e~~ipIRIGvN~GSL~~~ 146 (359)
T PF04551_consen 129 ERGIPIRIGVNSGSLEKD 146 (359)
T ss_dssp HHT-EEEEEEEGGGS-HH
T ss_pred HCCCCEEEecccccCcHH
Confidence 999999999988876543
No 64
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=85.54 E-value=9 Score=39.68 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.++.++++ +.+++.++..||=-++ ++|++..+.+.+.. ..+++ ....+.++++.+++.+ ++.| .
T Consensus 18 ~~~s~~~k~~ia-~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~--~~r~~~~di~~a~~~g-~~~i~i~~ 93 (365)
T TIGR02660 18 VAFTAAEKLAIA-RALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMA--WCRARDADIEAAARCG-VDAVHISI 93 (365)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEE--EcCCCHHHHHHHHcCC-cCEEEEEE
Confidence 367999999875 5589999999999554 45567777776553 22221 1123578888887664 3443 1
Q ss_pred ccCCCC----cCccccccHHHHHHHHHHHhhCCCeEEEecCC-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 383 SRYPSN----LWINQIGTVTEAIEVVKLANDVPWGVVISHRS-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 383 ~~~~~~----ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
+-++.. ++.++---+..+.+++++|+++|+.+.++... ..++..+++.++ ...|+..+.+.+
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 111111 11111222444558889999999998887643 335666666654 445677775433
No 65
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.26 E-value=13 Score=36.70 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCC---Cceecc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPL---AMLFFS 383 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a---~d~v~~ 383 (479)
.++.++.++++. .+.+.++..||= |. .++|++..+.+++.. +.+.+= ...+.++++.+++.+. ++.+
T Consensus 16 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l--~r~~~~~v~~a~~~~~~~~~~~i-- 90 (268)
T cd07940 16 SLTPEEKLEIAR-QLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGL--ARAVKKDIDAAAEALKPAKVDRI-- 90 (268)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEE--ccCCHhhHHHHHHhCCCCCCCEE--
Confidence 678899998764 578999999997 43 567887777777643 322210 1124667777666542 5555
Q ss_pred cCCCCcCc-------------cccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcccCCCC
Q 011677 384 RYPSNLWI-------------NQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIKAGAPC 446 (479)
Q Consensus 384 ~~~~~ik~-------------~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik~G~~~ 446 (479)
.+-. ++---+-.+.++++.|++.|+.+.++.. .+.++..+++.++ ...|+..+.+.+..
T Consensus 91 ----~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 166 (268)
T cd07940 91 ----HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV 166 (268)
T ss_pred ----EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3311 1112345567888899999999887764 3335555555554 55677777544443
No 66
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=84.56 E-value=5.1 Score=43.31 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHHHHHhhCCceeee-cCC---CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 319 IEMYKELCADYPIVSIE-DPF---DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 319 i~~~~~ll~~~~i~~iE-dP~---~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+.... +-+.++..|+ |+- ...-++..++|++.. ++|++... .++++.+.+++.+ +|+| .+-+.
T Consensus 243 ~~~~~~-l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~aG-ad~I------~vg~g 312 (495)
T PTZ00314 243 IERAAA-LIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLIDAG-ADGL------RIGMG 312 (495)
T ss_pred HHHHHH-HHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHHcC-CCEE------EECCc
Confidence 445444 4456777777 552 233356788888887 78877764 3589999998876 7787 43221
Q ss_pred -------c------cccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHH
Q 011677 393 -------Q------IGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLH 459 (479)
Q Consensus 393 -------~------~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ 459 (479)
+ ...++...++++.|++.|++++........ .-+--|+++|+..+-.|.. |..
T Consensus 313 ~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~---~di~kAla~GA~~Vm~G~~-----------~a~ 378 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS---GDICKALALGADCVMLGSL-----------LAG 378 (495)
T ss_pred CCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH---HHHHHHHHcCCCEEEECch-----------hcc
Confidence 1 134667788889999999998774433222 1223455668888888876 333
Q ss_pred HHHHhCCCccccCccc
Q 011677 460 IEEELGDHAIYAGEDY 475 (479)
Q Consensus 460 ie~~l~~~~~~~~~~~ 475 (479)
.+|..+....+.|+.|
T Consensus 379 ~~e~~~~~~~~~g~~~ 394 (495)
T PTZ00314 379 TEEAPGEYFFKDGVRL 394 (495)
T ss_pred ccccCCceeeeCCeEE
Confidence 4454554444555544
No 67
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.51 E-value=8 Score=38.30 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-.+.+++.+++++|.++=+|+++.+.+-..++. ....|.+.+. +|..-++.+- +.--.| ++|-++.|
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v-d~~kIga~~~--~n~~LL~~~a--~~gkPV------~lk~G~~~ 145 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA-DMLQIGSRNM--QNFELLKEVG--KTKKPI------LLKRGMSA 145 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC-CEEEECcccc--cCHHHHHHHh--cCCCcE------EEeCCCCC
Confidence 55555677888999999999999999988888772 2266667764 4555555553 334677 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++...+..|- .+++-|+
T Consensus 146 s~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 146 TLEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 99999999999887766 5777776
No 68
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=83.67 E-value=19 Score=35.66 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHhhh---hhhhc------CCccccCHHHHHHHhcCCCC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQIC---QQVVG------DDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~~~---~~I~g------de~~~t~~~~~~~~i~~~a~ 378 (479)
..++.++.++++. .+.+.++..||= |+ .+.|.+.|+.+++.. ..+++ .+...-+...++.+++.+ +
T Consensus 15 ~~~s~e~k~~i~~-~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g-~ 92 (273)
T cd07941 15 ISFSVEDKLRIAR-KLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAG-T 92 (273)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCC-C
Confidence 3678999998764 578999999997 54 677888888776531 11111 111111233555555543 4
Q ss_pred cee---cccCC----CCcCccccccHHHHHHHHHHHhhCCCeEEEecC---C-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 379 MLF---FSRYP----SNLWINQIGTVTEAIEVVKLANDVPWGVVISHR---S-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 379 d~v---~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~---~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
+.+ ++-++ .+++-++--.+..+.+++++|++.|+.+.++.. . ..++..+.++++ ...++..+.+.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~D 172 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVLCD 172 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 444 00000 011112223455678899999999999876533 1 234566677666 666777775443
No 69
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=83.54 E-value=6 Score=39.02 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++.+.+.+++++|.++=+|++.++.+-..++. ....|.+.+. +|..-++.+-.. --.| ++|.++.+
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~-d~lkI~s~~~--~n~~LL~~~a~~--gkPV------ilk~G~~~ 143 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA-DILQIGARNM--QNFELLKEVGKQ--GKPV------LLKRGMGN 143 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC-CEEEECcccc--cCHHHHHHHhcC--CCcE------EEeCCCCC
Confidence 45555677888999999999999999988887762 2266667764 456656655433 4578 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|+..++...++.|- .+++-|+
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCER 168 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99999999999988777 5777775
No 70
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.49 E-value=4.9 Score=38.04 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC-HHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED-WEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++.+.. +.+-+-+|..||=++.-.+ ++..++|+++. +-|-++- +.+++++++.++.++ +++. -+-
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT--Vl~~e~a~~ai~aGA-~Fiv-----SP~ 84 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGT--ILNAKQFEDAAKAGS-RFIV-----SPG 84 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEe--CcCHHHHHHHHHcCC-CEEE-----CCC
Confidence 677888765 4467789999999998444 46678888776 4444443 457999999998884 5540 222
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
.+ -++++.|+++|+.++.|.++. || +.-|...|+..+|
T Consensus 85 ~~--------~~vi~~a~~~~i~~iPG~~Tp-tE----i~~A~~~Ga~~vK 122 (201)
T PRK06015 85 TT--------QELLAAANDSDVPLLPGAATP-SE----VMALREEGYTVLK 122 (201)
T ss_pred CC--------HHHHHHHHHcCCCEeCCCCCH-HH----HHHHHHCCCCEEE
Confidence 22 267777889999987766542 11 2233444566665
No 71
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=83.36 E-value=7.8 Score=39.69 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++++.+.++++++.++=+|+++++.+-..++.. .++|.+.+. +|...++.+-.. ---| ++|-+..+
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd-~lqIgAr~~--~N~~LL~~va~~--~kPV------iLk~G~~~ 211 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVD-ILQIGARNM--QNFDLLKEVGKT--NKPV------LLKRGMSA 211 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCC-eEEECcccc--cCHHHHHHHHcC--CCcE------EEeCCCCC
Confidence 455556777789999999999999999888877622 266666664 566666666443 3477 89999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++....+.|- .+++-|+
T Consensus 212 ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 212 TIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99999999999887766 5777776
No 72
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.14 E-value=14 Score=38.03 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
++-++++.+..+++++.++=+|++.++.+-..++. .+++|.+.+. +|..-++.+-.. --.| ++|-+..+
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~-d~lqIga~~~--~n~~LL~~va~t--~kPV------llk~G~~~ 219 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAADLEKIAEVA-DVIQVGARNM--QNFSLLKKVGAQ--DKPV------LLKRGMAA 219 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC-CeEEECcccc--cCHHHHHHHHcc--CCeE------EEeCCCCC
Confidence 66777788878899999999999999988887762 2266666664 455656555443 4578 99999999
Q ss_pred cHHHHHHHHHHHhhCCC-eEEEecC
Q 011677 396 TVTEAIEVVKLANDVPW-GVVISHR 419 (479)
Q Consensus 396 gitea~~i~~~A~~~g~-~~~v~h~ 419 (479)
++.|++.++.+..+.|- ++++-|+
T Consensus 220 t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 220 TIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999999999988776 5777776
No 73
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.72 E-value=5.3 Score=38.16 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC-HHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED-WEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++++.. +.+.+.++..||=++...+ .+..++|+++. +.|.++- +++.++++.+++.+ ++++. .+
T Consensus 25 ~~~~a~~i~-~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGT--Vl~~~~a~~a~~aG-A~Fiv-----sP- 94 (212)
T PRK05718 25 KLEDAVPLA-KALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGT--VLNPEQLAQAIEAG-AQFIV-----SP- 94 (212)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEee--ccCHHHHHHHHHcC-CCEEE-----CC-
Confidence 678888765 4577899999999987554 46678888777 5455554 45689999999887 55551 22
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
++++ ++++.|+++++.++.|.++. |+ +.-|...|+..+|+
T Consensus 95 -----~~~~--~vi~~a~~~~i~~iPG~~Tp-tE----i~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 -----GLTP--PLLKAAQEGPIPLIPGVSTP-SE----LMLGMELGLRTFKF 134 (212)
T ss_pred -----CCCH--HHHHHHHHcCCCEeCCCCCH-HH----HHHHHHCCCCEEEE
Confidence 2223 66777888999976666532 11 33356667777776
No 74
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=82.68 E-value=21 Score=34.90 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.++.++++ +.+++.++..||=-++ ++|++..+.+.+.. +.+.+= ...+.++++.+.+.+ ++.+ +
T Consensus 15 ~~~~~~~k~~i~-~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~--~r~~~~~v~~a~~~g-~~~i~i~~ 90 (259)
T cd07939 15 VAFSREEKLAIA-RALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVW--CRAVKEDIEAALRCG-VTAVHISI 90 (259)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEe--ccCCHHHHHHHHhCC-cCEEEEEE
Confidence 367899999875 5589999999999543 45566777776632 222211 113577888777654 4555 1
Q ss_pred ccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecCC-CCCchhHHHHhH---hhcCCCCcccCCCCch
Q 011677 383 SRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHRS-GETEDSFIADLS---VGLASGQIKAGAPCRG 448 (479)
Q Consensus 383 ~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~-get~d~~~~dlA---v~~~~~~ik~G~~~~~ 448 (479)
+.++. +++-++--.+..+.++++.|++.|+.+.++... +.++..++..++ +..|+..+.+.+..+.
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~ 164 (259)
T cd07939 91 PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGI 164 (259)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 11111 111112233556678999999999998777743 335566655554 5567777765554443
No 75
>KOG4109 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30 [Transcription]
Probab=81.68 E-value=1.7 Score=36.87 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=31.1
Q ss_pred HHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 4 QEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 4 ~~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
..|+.+..+| +|---+..+..+||.||+.||++|+.+-+
T Consensus 67 RqYLdqtVaP-iLL~Gm~~lA~~rP~nPi~~LatyLlk~s 105 (116)
T KOG4109|consen 67 RQYLDQTVAP-ILLQGMAALAKERPSNPISFLATYLLKNS 105 (116)
T ss_pred hhhcccchhH-HHHHHHHHHHhhCCCCHHHHHHHHHhccc
Confidence 4677665544 55577889999999999999999999754
No 76
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.19 E-value=3.9 Score=41.67 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred HHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccC---CCCcCccc------cccHHHHHHHHHHHhhCCCeEE
Q 011677 347 KSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY---PSNLWINQ------IGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 347 ~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~---~~~ik~~~------~Ggitea~~i~~~A~~~g~~~~ 415 (479)
+++++.+ ++|+++.. +| ++..+.+++.+ +|++ ++ |+-+-.+| ..-+|...++++.|+..|.+++
T Consensus 143 k~ik~~~P~~~vIaGNV-~T-~e~a~~Li~aG-AD~v--KVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI 217 (346)
T PRK05096 143 AKAREAWPDKTICAGNV-VT-GEMVEELILSG-ADIV--KVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV 217 (346)
T ss_pred HHHHHhCCCCcEEEecc-cC-HHHHHHHHHcC-CCEE--EEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE
Confidence 3444444 66777774 44 88888888765 7777 21 22222333 3468999999999999999986
Q ss_pred EecCCCCCchhHHHHhHhhcCCCCcccCCCCch
Q 011677 416 ISHRSGETEDSFIADLSVGLASGQIKAGAPCRG 448 (479)
Q Consensus 416 v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~ 448 (479)
.-.....+.|- --|++.|+.++-.|++..+
T Consensus 218 ADGGi~~sGDI---~KAlaaGAd~VMlGsllAG 247 (346)
T PRK05096 218 SDGGCTVPGDV---AKAFGGGADFVMLGGMLAG 247 (346)
T ss_pred ecCCcccccHH---HHHHHcCCCEEEeChhhcC
Confidence 54433323221 2455667889999987544
No 77
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=78.79 E-value=23 Score=36.68 Aligned_cols=130 Identities=17% Similarity=0.162 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--CCC-ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--PFD-KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P~~-~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.+|.++.. +.+++.++..||= |.. ++|++..+.+.+.. +.+++= ...+.++++.+++.+ ++.| +
T Consensus 17 ~~~s~~~k~~ia-~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~--~r~~~~di~~a~~~g-~~~i~i~~ 92 (363)
T TIGR02090 17 VSLTVEQKVEIA-RKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSL--ARALKKDIDKAIDCG-VDSIHTFI 92 (363)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEE--cccCHHHHHHHHHcC-cCEEEEEE
Confidence 367999999875 5589999999997 433 56666667776544 333321 123588898888765 4555 0
Q ss_pred ccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEec-CCCCCchhHHHHh---HhhcCCCCcccCC
Q 011677 383 SRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISH-RSGETEDSFIADL---SVGLASGQIKAGA 444 (479)
Q Consensus 383 ~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h-~~get~d~~~~dl---Av~~~~~~ik~G~ 444 (479)
+-++. +++-+.-.-+..+.+++++|++.|+.+.++- ..+.++..++.++ +...++..+.+.+
T Consensus 93 ~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 93 ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 10000 0111222235677789999999999987765 3444566666665 4555777775433
No 78
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=78.43 E-value=45 Score=32.70 Aligned_cols=126 Identities=9% Similarity=-0.063 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--------------CCCccCHHHHHHHHhhh--hhh--hcCCccccCHHHHHHH
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--------------PFDKEDWEHTKSVLQIC--QQV--VGDDLLMSNPKRIERA 372 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--------------P~~~~D~~g~~~L~~~~--~~I--~gde~~~t~~~~~~~~ 372 (479)
..++.++.++++. .+.+.++..||= |...++++..+.+++.. +.+ ...- ...+++++...
T Consensus 17 ~~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~-~~~~~~~i~~a 94 (263)
T cd07943 17 HQFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLP-GIGTVDDLKMA 94 (263)
T ss_pred eecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecC-CccCHHHHHHH
Confidence 3678899998764 578999999998 44566777777776654 222 1111 12347778887
Q ss_pred hcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec-CCCCCchhHHHHh---HhhcCCCCcccCCCC
Q 011677 373 TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH-RSGETEDSFIADL---SVGLASGQIKAGAPC 446 (479)
Q Consensus 373 i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h-~~get~d~~~~dl---Av~~~~~~ik~G~~~ 446 (479)
.+.+ +|.+ .+-... .=+..+.++++.|++.|+.+.+.- +.+..+..++.++ +...|+..+.+.+..
T Consensus 95 ~~~g-~~~i------ri~~~~-s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~ 164 (263)
T cd07943 95 ADLG-VDVV------RVATHC-TEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSA 164 (263)
T ss_pred HHcC-CCEE------EEEech-hhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 7654 7777 543211 123578889999999999876554 2333445555544 344577776544433
No 79
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=78.35 E-value=5.1 Score=43.46 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=53.2
Q ss_pred hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc----------------------HHHHHHHHHHHhhCC
Q 011677 354 QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT----------------------VTEAIEVVKLANDVP 411 (479)
Q Consensus 354 ~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg----------------------itea~~i~~~A~~~g 411 (479)
+|+++|=.| +++-...+++. ++.| .|.|+.+|. -.....+++.|+++|
T Consensus 89 iPLVADIHF--~~~~A~~a~~~--vdki------RINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~ 158 (606)
T PRK00694 89 IPLVADIHF--FPQAAMHVADF--VDKV------RINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLG 158 (606)
T ss_pred CCEEeecCC--ChHHHHHHHHh--cCce------EECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCC
Confidence 999999765 57766666654 9999 999999998 567888999999999
Q ss_pred CeEEEecCCCCCchhHH
Q 011677 412 WGVVISHRSGETEDSFI 428 (479)
Q Consensus 412 ~~~~v~h~~get~d~~~ 428 (479)
+++-||-++|.-++...
T Consensus 159 ~~IRIGvN~GSL~~~i~ 175 (606)
T PRK00694 159 KAMRIGVNHGSLSERVM 175 (606)
T ss_pred CCEEEecCCcCchHHHH
Confidence 99999999887655443
No 80
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.84 E-value=11 Score=36.38 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCC-ccCHHHHHHHHhhh---hh--hhcCCccccCHHHHHHHhcCCCCceecccCCC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFD-KEDWEHTKSVLQIC---QQ--VVGDDLLMSNPKRIERATLIPLAMLFFSRYPS 387 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~-~~D~~g~~~L~~~~---~~--I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~ 387 (479)
+.+++.+.. +.+-+-+|..||=+++ ++-.+.+++|++.. .| ++|=- .+.++++++.+++.++ +++.
T Consensus 25 ~~~~a~~~~-~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA-~FiV----- 96 (222)
T PRK07114 25 DVEVAKKVI-KACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGA-NFIV----- 96 (222)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCC-CEEE-----
Confidence 677888764 4567889999999996 45668898887544 22 23333 3457999999998884 5540
Q ss_pred CcCccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 388 NLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 388 ~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
-+-.+ -+++++|+++|+.++.|.++
T Consensus 97 sP~~~--------~~v~~~~~~~~i~~iPG~~T 121 (222)
T PRK07114 97 TPLFN--------PDIAKVCNRRKVPYSPGCGS 121 (222)
T ss_pred CCCCC--------HHHHHHHHHcCCCEeCCCCC
Confidence 22222 25677788889887666654
No 81
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=77.11 E-value=14 Score=35.22 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQ 393 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~ 393 (479)
+.+++++....+.+-++..+|+=|+..+-++..++|++.-+++.+.-. .++.+....++.+ +++| .+-+++
T Consensus 62 ~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V--~s~~Qa~~Aa~AG-A~yv------sP~vgR 132 (211)
T cd00956 62 DAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKKLSEEGIKTNVTAI--FSAAQALLAAKAG-ATYV------SPFVGR 132 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHHHHHcCCceeeEEe--cCHHHHHHHHHcC-CCEE------EEecCh
Confidence 678888876665555688999999988666666666544355444433 3488888888777 6788 666666
Q ss_pred -----cccHHHHHHHHHHHhhCCCe---EEEecCCCCCchhHHHHhHhhcCCCCcccCC
Q 011677 394 -----IGTVTEAIEVVKLANDVPWG---VVISHRSGETEDSFIADLSVGLASGQIKAGA 444 (479)
Q Consensus 394 -----~Ggitea~~i~~~A~~~g~~---~~v~h~~get~d~~~~dlAv~~~~~~ik~G~ 444 (479)
.-|+.-..++.++++.+|++ ++.|-+. ... +.+ |...|+..++.+.
T Consensus 133 ~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~---~~e-i~~-a~~~Gad~vTv~~ 186 (211)
T cd00956 133 IDDLGGDGMELIREIRTIFDNYGFDTKILAASIRN---PQH-VIE-AALAGADAITLPP 186 (211)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCC---HHH-HHH-HHHcCCCEEEeCH
Confidence 46788889999999999877 3333332 111 222 5567888888774
No 82
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=75.55 E-value=28 Score=36.25 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..+|.++.++++ +.+++.++..||=-++ ++|++..+.+.+.. ..+++-- ....++++.+++.+ ++.| +
T Consensus 21 ~~~s~e~k~~ia-~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~--r~~~~di~~a~~~g-~~~i~i~~ 96 (378)
T PRK11858 21 VVFTNEEKLAIA-RMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALN--RAVKSDIDASIDCG-VDAVHIFI 96 (378)
T ss_pred CCCCHHHHHHHH-HHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEc--ccCHHHHHHHHhCC-cCEEEEEE
Confidence 367999999875 5589999999997443 55566667776533 2232221 12377888887664 3444 1
Q ss_pred ccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcc
Q 011677 383 SRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIK 441 (479)
Q Consensus 383 ~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik 441 (479)
+-++. ++..++-.-+..+.+++++|++.|+.+.++.. .+.++..++.+++ ...|+..+.
T Consensus 97 ~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~ 163 (378)
T PRK11858 97 ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVR 163 (378)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 11111 11122223345555688899999999888763 3446667776665 444666664
No 83
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=74.47 E-value=45 Score=34.54 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
++..+. ...+.+.+++++|.|+=+|++..+.+-..++ -.+.+|.+.+. +|..-++.+-.. --.| ++|-
T Consensus 165 g~~~e~-l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~--~n~~LL~~~a~~--gkPV------ilk~ 232 (360)
T PRK12595 165 GLGVEG-LKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNM--QNFELLKAAGRV--NKPV------LLKR 232 (360)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccc--cCHHHHHHHHcc--CCcE------EEeC
Confidence 444444 4456777899999999999999988888777 22266667764 455555555433 3467 8888
Q ss_pred cccccHHHHHHHHHHHhhCCC-eEEEec
Q 011677 392 NQIGTVTEAIEVVKLANDVPW-GVVISH 418 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~-~~~v~h 418 (479)
++..++.|+..++....+.|- ++++-|
T Consensus 233 G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 233 GLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 888899999999998887776 577776
No 84
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=74.16 E-value=33 Score=32.73 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++...-.. |-+-++.-||=|++-.+. +..+.|++.. +-|-++- +.++++++++++.++-=+| -+.
T Consensus 23 ~~e~a~~~a~A-li~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT--VL~~~q~~~a~~aGa~fiV------sP~ 93 (211)
T COG0800 23 DVEEALPLAKA-LIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGT--VLNPEQARQAIAAGAQFIV------SPG 93 (211)
T ss_pred CHHHHHHHHHH-HHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEcccc--ccCHHHHHHHHHcCCCEEE------CCC
Confidence 57888877554 567899999999986554 7778888887 5555554 3469999999988854444 332
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCC
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRS 420 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ 420 (479)
.+ -++++.|..+|++++.|..+
T Consensus 94 ~~--------~ev~~~a~~~~ip~~PG~~T 115 (211)
T COG0800 94 LN--------PEVAKAANRYGIPYIPGVAT 115 (211)
T ss_pred CC--------HHHHHHHHhCCCcccCCCCC
Confidence 22 26777888899988766653
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=72.83 E-value=79 Score=31.18 Aligned_cols=138 Identities=15% Similarity=0.054 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCCcc------------CHHHHHHHHhh----h-hhhhcCCccccCHHHHHHHh
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFDKE------------DWEHTKSVLQI----C-QQVVGDDLLMSNPKRIERAT 373 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~~~------------D~~g~~~L~~~----~-~~I~gde~~~t~~~~~~~~i 373 (479)
-.+|.++..++. +.+++.+|.+||=-++.. |.+.|+++.+. + +..+.+-.. -+.+++....
T Consensus 15 ~~f~~~~~~~ia-~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAIY-RALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-DDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHHH-HHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-CCHHHHHHHh
Confidence 367899999875 568999999999887643 25677777553 2 222222211 1245666654
Q ss_pred cCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcccCC---CC
Q 011677 374 LIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIKAGA---PC 446 (479)
Q Consensus 374 ~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik~G~---~~ 446 (479)
+.+ ++.| .+-. ...-+.++++++++|+++|+.+.++-. +..+++.++.+++ ...++..+.+.+ ..
T Consensus 93 ~~g-v~~i------ri~~-~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~ 164 (266)
T cd07944 93 GSV-VDMI------RVAF-HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSM 164 (266)
T ss_pred cCC-cCEE------EEec-ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 443 6776 4433 223688999999999999999876532 2234556655555 455677664333 33
Q ss_pred chhHHHHhHHHH
Q 011677 447 RGERLAKYNQLL 458 (479)
Q Consensus 447 ~~er~~kyn~ll 458 (479)
..+++.++=+.+
T Consensus 165 ~P~~v~~lv~~l 176 (266)
T cd07944 165 YPEDIKRIISLL 176 (266)
T ss_pred CHHHHHHHHHHH
Confidence 455554444443
No 86
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.50 E-value=16 Score=34.89 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC-HHHHHHHHhhh-h-h--hhcCCccccCHHHHHHHhcCCCCceecccCCCC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED-WEHTKSVLQIC-Q-Q--VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D-~~g~~~L~~~~-~-~--I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ 388 (479)
+.+++.... +.+-+-+|..||=+++-.+ .+..++|+++. - | ++|=- .+++++++++.++.+ ++++ .
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aG-A~Fi------v 93 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAG-AQFI------V 93 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcC-CCEE------E
Confidence 567777664 5567889999999998555 46678887765 2 2 23333 356799999999888 4555 1
Q ss_pred cCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 389 LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 389 ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
.|+- --++++.|+++|++++.|..+. ++ +.-|...|+.++|+
T Consensus 94 -sP~~------~~~v~~~~~~~~i~~iPG~~T~-~E----~~~A~~~Gad~vkl 135 (213)
T PRK06552 94 -SPSF------NRETAKICNLYQIPYLPGCMTV-TE----IVTALEAGSEIVKL 135 (213)
T ss_pred -CCCC------CHHHHHHHHHcCCCEECCcCCH-HH----HHHHHHcCCCEEEE
Confidence 1211 1257777999999987766542 21 34445678888886
No 87
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.60 E-value=9.2 Score=36.08 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++.+... .+-+-++..||=+++-.+. +..++++++. +-|-++- +.+.++++++++.++-=++ -+-
T Consensus 18 ~~~~a~~~~~-al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGT--V~~~e~a~~a~~aGA~Fiv------SP~ 88 (196)
T PF01081_consen 18 DPEDAVPIAE-ALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGT--VLTAEQAEAAIAAGAQFIV------SPG 88 (196)
T ss_dssp SGGGHHHHHH-HHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES----SHHHHHHHHHHT-SEEE------ESS
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEe--ccCHHHHHHHHHcCCCEEE------CCC
Confidence 4566666544 4567899999999986654 5566677776 4444443 4569999999988844344 221
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIK 441 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik 441 (479)
+ --+++++|+++|+.++.|.++. |+ +.-|.-.|+..+|
T Consensus 89 ------~--~~~v~~~~~~~~i~~iPG~~Tp-tE----i~~A~~~G~~~vK 126 (196)
T PF01081_consen 89 ------F--DPEVIEYAREYGIPYIPGVMTP-TE----IMQALEAGADIVK 126 (196)
T ss_dssp ----------HHHHHHHHHHTSEEEEEESSH-HH----HHHHHHTT-SEEE
T ss_pred ------C--CHHHHHHHHHcCCcccCCcCCH-HH----HHHHHHCCCCEEE
Confidence 2 2367888999999987777642 11 2334555667666
No 88
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=70.10 E-value=18 Score=37.20 Aligned_cols=68 Identities=15% Similarity=0.041 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhhCC-ceeeec----------------CCC-c--cCHHHHHHHHhhh-hhhhcCCccccCHHHHH
Q 011677 312 FKSGEDMIEMYKELCADYP-IVSIED----------------PFD-K--EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIE 370 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~-i~~iEd----------------P~~-~--~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~ 370 (479)
.+|.+|.+++. +++++.+ +.||+= |.. + .+++..+.+++.+ +||++---. ++++++.
T Consensus 224 G~~~~e~~~~~-~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i-~~~~~~~ 301 (343)
T cd04734 224 GLSPDEALEIA-ARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRI-RDPAEAE 301 (343)
T ss_pred CCCHHHHHHHH-HHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCC-CCHHHHH
Confidence 46788998764 5678887 777761 111 1 1245556677777 886644333 4599999
Q ss_pred HHhcCCCCcee
Q 011677 371 RATLIPLAMLF 381 (479)
Q Consensus 371 ~~i~~~a~d~v 381 (479)
++++.+.+|.|
T Consensus 302 ~~l~~~~~D~V 312 (343)
T cd04734 302 QALAAGHADMV 312 (343)
T ss_pred HHHHcCCCCee
Confidence 99999999998
No 89
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=69.68 E-value=14 Score=37.68 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQ 393 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~ 393 (479)
+.++. +.+.+.+++++|.|+=.||+.++.+-..++--.++.|...|. +|..-++.....+ --| +++.+-
T Consensus 74 ~~e~~-~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~--~n~pLL~~~A~~g--kPv------ilStGm 142 (329)
T TIGR03569 74 SEEDH-RELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEI--TNAPLLKKIARFG--KPV------ILSTGM 142 (329)
T ss_pred CHHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccc--cCHHHHHHHHhcC--CcE------EEECCC
Confidence 34444 455678899999999999988877666654222256666664 4566666654433 235 566665
Q ss_pred cccHHHHHHHHHHHhhCCCe
Q 011677 394 IGTVTEAIEVVKLANDVPWG 413 (479)
Q Consensus 394 ~Ggitea~~i~~~A~~~g~~ 413 (479)
.++.|+.+++++.+++|..
T Consensus 143 -atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 143 -ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred -CCHHHHHHHHHHHHHcCCC
Confidence 4777777777777776653
No 90
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=69.56 E-value=50 Score=30.82 Aligned_cols=116 Identities=17% Similarity=0.036 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhCCceeeecC--CC-ccCHHHHHHHHhhh--hhhhcCCccccCHH--HHHHHhcCCCCceecccCC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDP--FD-KEDWEHTKSVLQIC--QQVVGDDLLMSNPK--RIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP--~~-~~D~~g~~~L~~~~--~~I~gde~~~t~~~--~~~~~i~~~a~d~v~~~~~ 386 (479)
+.+++.+.. +.+ +.++.|||-+ +. +.-.+..++|++.. ..+..|=-. .++. .++++.+.+ +|++
T Consensus 10 ~~~~a~~~~-~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~-~d~~~~~~~~~~~~G-ad~i----- 80 (206)
T TIGR03128 10 DIEEALELA-EKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKT-MDAGEYEAEQAFAAG-ADIV----- 80 (206)
T ss_pred CHHHHHHHH-HHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEee-ccchHHHHHHHHHcC-CCEE-----
Confidence 567787764 445 6679999995 43 44467777777763 344443211 1232 466666555 7888
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEe-cCCCCCchhHHHHhHhhcCCCCcccC
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVIS-HRSGETEDSFIADLSVGLASGQIKAG 443 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~-h~~get~d~~~~dlAv~~~~~~ik~G 443 (479)
.+.... + .....++.+.|+++|+++++. ++. .|... -+..+...++.++++.
T Consensus 81 -~vh~~~-~-~~~~~~~i~~~~~~g~~~~~~~~~~-~t~~~-~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 81 -TVLGVA-D-DATIKGAVKAAKKHGKEVQVDLINV-KDKVK-RAKELKELGADYIGVH 133 (206)
T ss_pred -EEeccC-C-HHHHHHHHHHHHHcCCEEEEEecCC-CChHH-HHHHHHHcCCCEEEEc
Confidence 544332 2 223467788899999999887 443 32111 1233345577888764
No 91
>TIGR03586 PseI pseudaminic acid synthase.
Probab=67.65 E-value=19 Score=36.80 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQ 393 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~ 393 (479)
+.++..+ +.+.+++++|.|+=.||+.++.+-..++.-..+.|...|. +|..-++.....+ --| +++.+.
T Consensus 75 ~~e~~~~-L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~--~n~~LL~~va~~g--kPv------ilstG~ 143 (327)
T TIGR03586 75 PWEWHKE-LFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEI--TDLPLIRYVAKTG--KPI------IMSTGI 143 (327)
T ss_pred CHHHHHH-HHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccc--cCHHHHHHHHhcC--CcE------EEECCC
Confidence 4444443 3566899999999999998877666555222255566654 3455455443322 234 455555
Q ss_pred cccHHHHHHHHHHHhhCCC-eEEEec
Q 011677 394 IGTVTEAIEVVKLANDVPW-GVVISH 418 (479)
Q Consensus 394 ~Ggitea~~i~~~A~~~g~-~~~v~h 418 (479)
.++.|+..++.+.++.|. .+++=|
T Consensus 144 -~t~~Ei~~Av~~i~~~g~~~i~Llh 168 (327)
T TIGR03586 144 -ATLEEIQEAVEACREAGCKDLVLLK 168 (327)
T ss_pred -CCHHHHHHHHHHHHHCCCCcEEEEe
Confidence 466666666666655554 344433
No 92
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=66.96 E-value=79 Score=34.51 Aligned_cols=133 Identities=9% Similarity=0.003 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHh-hh--hhhhc------CCccccCHHHHHHHhcCCCC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQ-IC--QQVVG------DDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~-~~--~~I~g------de~~~t~~~~~~~~i~~~a~ 378 (479)
..++.+|.++++ +.|++.++..||= |. .++|++.|+++.+ .+ +.+++ .+....+-+.++.+++.+ .
T Consensus 22 ~~~s~e~Kl~ia-~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g-~ 99 (524)
T PRK12344 22 ISFSVEDKLRIA-RKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAG-T 99 (524)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCC-C
Confidence 367999999876 5589999999998 43 5788899998875 21 22221 111111223444444432 3
Q ss_pred cee---cccCC----CCcCccccccHHHHHHHHHHHhhCCCeEEEecC---C-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 379 MLF---FSRYP----SNLWINQIGTVTEAIEVVKLANDVPWGVVISHR---S-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 379 d~v---~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~---~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
+.+ .+-++ ..++-++-.-+..+.+.+++|+++|..+.++.. . ..++..++.+++ ...++..+.+.+
T Consensus 100 ~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~D 179 (524)
T PRK12344 100 PVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCD 179 (524)
T ss_pred CEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEcc
Confidence 333 11100 122222334566677888899999999877654 1 135556666654 555777775444
Q ss_pred C
Q 011677 445 P 445 (479)
Q Consensus 445 ~ 445 (479)
.
T Consensus 180 T 180 (524)
T PRK12344 180 T 180 (524)
T ss_pred C
Confidence 3
No 93
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=66.91 E-value=18 Score=37.37 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc-------c------cccHHHHHHHHHHHhhC
Q 011677 346 TKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN-------Q------IGTVTEAIEVVKLANDV 410 (479)
Q Consensus 346 ~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~-------~------~Ggitea~~i~~~A~~~ 410 (479)
.++|++.. +||+++.. +| .+.++.+++.+ +|+| .+=+. + ..-+|...++++.|+.+
T Consensus 140 ik~ik~~~~~~~viaGNV-~T-~e~a~~L~~aG-ad~v------kVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~ 210 (352)
T PF00478_consen 140 IKKIKKKFPDVPVIAGNV-VT-YEGAKDLIDAG-ADAV------KVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDY 210 (352)
T ss_dssp HHHHHHHSTTSEEEEEEE--S-HHHHHHHHHTT--SEE------EESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCceEEeccc-CC-HHHHHHHHHcC-CCEE------EEeccCCcccccccccccCCcHHHHHHHHHHHhhhc
Confidence 34555555 77788774 44 89999998877 8888 44432 1 34789999999999999
Q ss_pred CCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCch
Q 011677 411 PWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRG 448 (479)
Q Consensus 411 g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~ 448 (479)
+++++.......+.| .--|++.|+.++-.|.+..+
T Consensus 211 ~v~iIADGGi~~sGD---i~KAla~GAd~VMlG~llAg 245 (352)
T PF00478_consen 211 GVPIIADGGIRTSGD---IVKALAAGADAVMLGSLLAG 245 (352)
T ss_dssp TSEEEEESS-SSHHH---HHHHHHTT-SEEEESTTTTT
T ss_pred cCceeecCCcCcccc---eeeeeeecccceeechhhcc
Confidence 999865443322222 23456667899998887543
No 94
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=66.59 E-value=74 Score=32.59 Aligned_cols=142 Identities=11% Similarity=0.000 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec-------------CC-CccCHHHHHHHHhhh--hhhh--cCCccccCHHHHHHH
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED-------------PF-DKEDWEHTKSVLQIC--QQVV--GDDLLMSNPKRIERA 372 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd-------------P~-~~~D~~g~~~L~~~~--~~I~--gde~~~t~~~~~~~~ 372 (479)
..++.++.+++. +.+++.++..||= -+ ...|++-.+.+++.. +.+. ..= -..+.++++..
T Consensus 20 ~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~~~dl~~a 97 (337)
T PRK08195 20 HQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-GIGTVDDLKMA 97 (337)
T ss_pred CccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-CcccHHHHHHH
Confidence 467999999875 5589999999998 22 234666666665543 2221 111 01247788887
Q ss_pred hcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec-CCCCCchhHHHH---hHhhcCCCCcccCCC---
Q 011677 373 TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH-RSGETEDSFIAD---LSVGLASGQIKAGAP--- 445 (479)
Q Consensus 373 i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h-~~get~d~~~~d---lAv~~~~~~ik~G~~--- 445 (479)
.+.+ +|.+ .+-. .+.=...+.+.+++|++.|+.+.+.- ++...++..++. .+...++..+.+-+.
T Consensus 98 ~~~g-vd~i------ri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~ 169 (337)
T PRK08195 98 YDAG-VRVV------RVAT-HCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGA 169 (337)
T ss_pred HHcC-CCEE------EEEE-ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCC
Confidence 7665 6776 5432 22334567889999999999876543 233445555444 445567776653332
Q ss_pred CchhHHHHhHHHHHHHHHh
Q 011677 446 CRGERLAKYNQLLHIEEEL 464 (479)
Q Consensus 446 ~~~er~~kyn~ll~ie~~l 464 (479)
...+.+.++=+.+ -+++
T Consensus 170 ~~P~~v~~~v~~l--~~~l 186 (337)
T PRK08195 170 LLPEDVRDRVRAL--RAAL 186 (337)
T ss_pred CCHHHHHHHHHHH--HHhc
Confidence 3345454433333 3445
No 95
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.96 E-value=1.1e+02 Score=30.37 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCC-----------CccCHHHHHHHHhhh--hhhh----cCCccc-------cCHH
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPF-----------DKEDWEHTKSVLQIC--QQVV----GDDLLM-------SNPK 367 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~-----------~~~D~~g~~~L~~~~--~~I~----gde~~~-------t~~~ 367 (479)
.++.+|.++.. +.+++.++.+||=-+ ..++++..+.+++.. +++. +..... -...
T Consensus 17 ~~~~~~~~~ia-~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIA-EALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHH-HHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 56889999874 568999999999865 567777777777654 2222 222110 0245
Q ss_pred HHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEec---CCCCCchhHHHHh---HhhcCCCCcc
Q 011677 368 RIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH---RSGETEDSFIADL---SVGLASGQIK 441 (479)
Q Consensus 368 ~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h---~~get~d~~~~dl---Av~~~~~~ik 441 (479)
+++...+. ..+.| .+-.. ..-+..+.+.+++|++.|..+.+.= ..+.+++.+..++ +...|+..+.
T Consensus 96 di~~~~~~-g~~~i------ri~~~-~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (275)
T cd07937 96 FVEKAAKN-GIDIF------RIFDA-LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSIC 167 (275)
T ss_pred HHHHHHHc-CCCEE------EEeec-CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 55555443 35665 33221 1227788999999999998875421 1244555655555 4555777776
Q ss_pred cCCCCch
Q 011677 442 AGAPCRG 448 (479)
Q Consensus 442 ~G~~~~~ 448 (479)
+.+..+.
T Consensus 168 l~DT~G~ 174 (275)
T cd07937 168 IKDMAGL 174 (275)
T ss_pred EcCCCCC
Confidence 5544433
No 96
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.32 E-value=14 Score=39.49 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=69.6
Q ss_pred HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc-------cc----c--ccHHHHHHHHHHHh
Q 011677 344 EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI-------NQ----I--GTVTEAIEVVKLAN 408 (479)
Q Consensus 344 ~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~-------~~----~--Ggitea~~i~~~A~ 408 (479)
+..++++++. +||++... .++++.+.+++.+ +|+| .+-+ ++ + ..++...++++.|+
T Consensus 254 ~~i~~i~~~~~~~~vi~G~v--~t~~~a~~l~~aG-ad~i------~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 254 DSIKEIKKTYPDLDIIAGNV--ATAEQAKALIDAG-ADGL------RVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAA 324 (450)
T ss_pred HHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHHhC-CCEE------EECCCCCcCCccceecCCCccHHHHHHHHHHHHh
Confidence 4556677775 88777663 3599999998876 6777 3321 11 1 24566778888899
Q ss_pred hCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCcccc
Q 011677 409 DVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYR 476 (479)
Q Consensus 409 ~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~~ 476 (479)
+.+++++.........| +--|.++|+..+-.|.. |...+|..+.--.+.|+.|.
T Consensus 325 ~~~vpviadGGi~~~~d---i~kAla~GA~~V~~G~~-----------~a~~~e~pg~~~~~~g~~~k 378 (450)
T TIGR01302 325 QSGIPVIADGGIRYSGD---IVKALAAGADAVMLGSL-----------LAGTTESPGEYEIINGRRYK 378 (450)
T ss_pred hcCCeEEEeCCCCCHHH---HHHHHHcCCCEEEECch-----------hhcCCcCCCceEEECCEEEE
Confidence 99999877443322211 23355668888888876 44456655555445666653
No 97
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=65.16 E-value=26 Score=34.44 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhhCC---ceee-ecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCC
Q 011677 314 SGEDMIEMYKELCADYP---IVSI-EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~---i~~i-EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ 388 (479)
++.+++..| ++.+ |.-+ |.-+...+++..+.+++.+ +||...| +.+.+.++..+...+ +|+| .
T Consensus 71 ~~~~~A~~~----~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kd-fi~~~~qi~~a~~~G-AD~V------l 138 (260)
T PRK00278 71 DPVEIAKAY----EAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKD-FIIDPYQIYEARAAG-ADAI------L 138 (260)
T ss_pred CHHHHHHHH----HhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeee-ecCCHHHHHHHHHcC-CCEE------E
Confidence 455555444 3343 4433 4445678899999999999 9988888 566788888877665 7888 6
Q ss_pred cCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccC
Q 011677 389 LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAG 443 (479)
Q Consensus 389 ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G 443 (479)
+...-. ......++++.|+..|+.+++-....+ =+.-|...++.++-.+
T Consensus 139 Li~~~l-~~~~l~~li~~a~~lGl~~lvevh~~~-----E~~~A~~~gadiIgin 187 (260)
T PRK00278 139 LIVAAL-DDEQLKELLDYAHSLGLDVLVEVHDEE-----ELERALKLGAPLIGIN 187 (260)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCeEEEEeCCHH-----HHHHHHHcCCCEEEEC
Confidence 655443 245677788889999999887543221 1244555567766554
No 98
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=64.68 E-value=33 Score=34.28 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-Cceeee--------cCCCccC-H----HHHHHHHhhh-hhhhcCCccccCHHHHHHHh
Q 011677 309 GQNFKSGEDMIEMYKELCADY-PIVSIE--------DPFDKED-W----EHTKSVLQIC-QQVVGDDLLMSNPKRIERAT 373 (479)
Q Consensus 309 ~~~~~t~~e~i~~~~~ll~~~-~i~~iE--------dP~~~~D-~----~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i 373 (479)
++...+.+++++...+++++- .|.=|= +|+++++ + .-.+.|++.. +||.-|-. +++-++.++
T Consensus 31 gg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~---~~~va~~AL 107 (282)
T PRK11613 31 GGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS---KPEVIRESA 107 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC---CHHHHHHHH
Confidence 334457888888877766542 222221 3443332 1 1224455555 77777753 488888999
Q ss_pred cCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC
Q 011677 374 LIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG 421 (479)
Q Consensus 374 ~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g 421 (479)
+.+ +|+| |-+.|+++- +++..+.++|..+++-|+.|
T Consensus 108 ~~G-adiI----------NDI~g~~d~-~~~~~~a~~~~~vVlmh~~g 143 (282)
T PRK11613 108 KAG-AHII----------NDIRSLSEP-GALEAAAETGLPVCLMHMQG 143 (282)
T ss_pred HcC-CCEE----------EECCCCCCH-HHHHHHHHcCCCEEEEcCCC
Confidence 875 7887 555555432 55566778899999989754
No 99
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=64.24 E-value=32 Score=33.58 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCc
Q 011677 313 KSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDL 361 (479)
Q Consensus 313 ~t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~ 361 (479)
++.++..++ .+.+++.+|.|+--||+.++.+-..++.-..+.|...|+
T Consensus 53 l~~e~~~~L-~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl 100 (241)
T PF03102_consen 53 LSEEQHKEL-FEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDL 100 (241)
T ss_dssp S-HHHHHHH-HHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGT
T ss_pred CCHHHHHHH-HHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccc
Confidence 455666654 577899999999999988777776665322144555554
No 100
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=63.97 E-value=15 Score=40.93 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=50.9
Q ss_pred hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccH----------------------HHHHHHHHHHhhCC
Q 011677 354 QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTV----------------------TEAIEVVKLANDVP 411 (479)
Q Consensus 354 ~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggi----------------------tea~~i~~~A~~~g 411 (479)
+|+++|=.| +++-...+++. ++.| .|.|+.+|.- .....+++.|+++|
T Consensus 154 iPLVADIHF--~~~~Al~a~~~--vdki------RINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~ 223 (733)
T PLN02925 154 IPLVADIHF--APSVALRVAEC--FDKI------RVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYG 223 (733)
T ss_pred CCEEEecCC--CHHHHHHHHHh--cCCe------EECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence 999999764 57766666654 9999 9999999976 33455889999999
Q ss_pred CeEEEecCCCCCchhH
Q 011677 412 WGVVISHRSGETEDSF 427 (479)
Q Consensus 412 ~~~~v~h~~get~d~~ 427 (479)
+.+-||-++|.-++..
T Consensus 224 ~~iRIGvN~GSLs~ri 239 (733)
T PLN02925 224 RAMRIGTNHGSLSDRI 239 (733)
T ss_pred CCEEEecCCcCchHHH
Confidence 9999999888765443
No 101
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=63.38 E-value=57 Score=30.19 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhCCceeeec--CCC-ccCHHHHHHHHhhh--hhhhcCCccccCH--HHHHHHhcCCCCceecccCC
Q 011677 314 SGEDMIEMYKELCADYPIVSIED--PFD-KEDWEHTKSVLQIC--QQVVGDDLLMSNP--KRIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEd--P~~-~~D~~g~~~L~~~~--~~I~gde~~~t~~--~~~~~~i~~~a~d~v~~~~~ 386 (479)
+.+++.+.... +.+. +.|||= |+. ..-.+..+.+++.. +++.++-- +.++ ..++.+.+.+ +|.+
T Consensus 11 ~~~~~~~~~~~-l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~-v~~~~~~~~~~~~~aG-ad~i----- 81 (202)
T cd04726 11 DLEEALELAKK-VPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLK-TADAGALEAEMAFKAG-ADIV----- 81 (202)
T ss_pred CHHHHHHHHHH-hhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEE-eccccHHHHHHHHhcC-CCEE-----
Confidence 56777776544 5666 999999 553 33467778888764 77766532 2223 2345555444 7777
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEe-cCCCCCchhHHHHhHhhcCCCCcccC
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVIS-HRSGETEDSFIADLSVGLASGQIKAG 443 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~-h~~get~d~~~~dlAv~~~~~~ik~G 443 (479)
.+...- +.....++.+.++++|+++++. +.+ .|...... +...++.+++++
T Consensus 82 -~~h~~~--~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~~e~~~--~~~~~~d~v~~~ 133 (202)
T cd04726 82 -TVLGAA--PLSTIKKAVKAAKKYGKEVQVDLIGV-EDPEKRAK--LLKLGVDIVILH 133 (202)
T ss_pred -EEEeeC--CHHHHHHHHHHHHHcCCeEEEEEeCC-CCHHHHHH--HHHCCCCEEEEc
Confidence 543322 2233556777888999998764 433 33333322 566677887763
No 102
>PRK00915 2-isopropylmalate synthase; Validated
Probab=61.95 E-value=90 Score=33.97 Aligned_cols=131 Identities=19% Similarity=0.212 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCC---CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHh----cCCC--Cc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPF---DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERAT----LIPL--AM 379 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~---~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i----~~~a--~d 379 (479)
..+|.+|-++++ +.|++.++..||=-+ .+.|++..+++.+.. +.|++=- ..+..++...+ ..+. +.
T Consensus 21 ~~~s~e~K~~ia-~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~--r~~~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 21 ASLTVEEKLQIA-KQLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLA--RAVKKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEc--cCCHHHHHHHHHHhhcCCCCEEE
Confidence 367999999876 558999999999844 467888877776554 3332211 12366676665 2221 22
Q ss_pred eecccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecCC-CCCchhHHHHhH---hhcCCCCcccCC
Q 011677 380 LFFSRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHRS-GETEDSFIADLS---VGLASGQIKAGA 444 (479)
Q Consensus 380 ~v~~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~-get~d~~~~dlA---v~~~~~~ik~G~ 444 (479)
++.+-++. +++.++-.-+..+.+++++|+++|..+.++... ..++..++..++ ...|+..+.+.+
T Consensus 98 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 98 TFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred EEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 22111111 122222333444568888999999999887743 335556666554 444677765433
No 103
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=61.43 E-value=16 Score=40.07 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=50.1
Q ss_pred hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccH----------------------HHHHHHHHHHhhCC
Q 011677 354 QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTV----------------------TEAIEVVKLANDVP 411 (479)
Q Consensus 354 ~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggi----------------------tea~~i~~~A~~~g 411 (479)
+|+++|=.| +++-...+++. ++.| .|.|+.+|.- -....+++.|+++|
T Consensus 85 iPLVADIHF--~~~~A~~a~~~--v~ki------RINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~ 154 (611)
T PRK02048 85 VPLVADVHF--NPKVADVAAQY--AEKV------RINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENH 154 (611)
T ss_pred CCEEEecCC--CcHHHHHHHHh--hCCE------EECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCC
Confidence 999999765 46666566554 9999 9999999883 56667889999999
Q ss_pred CeEEEecCCCCCchh
Q 011677 412 WGVVISHRSGETEDS 426 (479)
Q Consensus 412 ~~~~v~h~~get~d~ 426 (479)
+++-||-++|.-++.
T Consensus 155 ~~iRIGvN~GSL~~~ 169 (611)
T PRK02048 155 TAIRIGVNHGSLSDR 169 (611)
T ss_pred CCEEEecCCcCchHH
Confidence 999999988765443
No 104
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.38 E-value=53 Score=35.64 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccC----HHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCcee-cccC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKED----WEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLF-FSRY 385 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D----~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v-~~~~ 385 (479)
..++..+....| -+.++..||=+..+.. .+..+++++.. ++|.++.. . ++++.+.+++.+ +|+| .+.=
T Consensus 239 ~~~~~~~ra~~L-v~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV-~-t~e~a~~li~aG-Ad~I~vg~g 314 (502)
T PRK07107 239 NTRDYAERVPAL-VEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV-V-DREGFRYLAEAG-ADFVKVGIG 314 (502)
T ss_pred ChhhHHHHHHHH-HHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc-c-CHHHHHHHHHcC-CCEEEECCC
Confidence 334555565554 4567888876666665 67888888877 67778875 3 499999999877 4776 1111
Q ss_pred CCCcCccc----cc--cHHHHHHHHHHH----hhCC--CeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCch
Q 011677 386 PSNLWINQ----IG--TVTEAIEVVKLA----NDVP--WGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRG 448 (479)
Q Consensus 386 ~~~ik~~~----~G--gitea~~i~~~A----~~~g--~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~ 448 (479)
++-+..++ +| .+|...++++.+ +++| ++++.-.....+.| +=-|+|+|+..+-.|.+..+
T Consensus 315 ~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gd---i~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 315 GGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYH---MTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred CCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhH---HHHHHHcCCCeeeeChhhhc
Confidence 23222223 22 355555555544 4457 77765443322221 22355668899999988544
No 105
>PRK09389 (R)-citramalate synthase; Provisional
Probab=61.31 E-value=77 Score=34.26 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCC---CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPF---DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~---~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.+|-++++ +.|.+.++..||=-+ +++|++..+.+.+.- ..|++- .....++++.+++.+ ++.| .
T Consensus 19 ~~~s~e~K~~ia-~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~--~r~~~~di~~a~~~g-~~~v~i~~ 94 (488)
T PRK09389 19 VSLTPEEKLEIA-RKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSF--ARAVKVDIDAALECD-VDSVHLVV 94 (488)
T ss_pred CCcCHHHHHHHH-HHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEee--cccCHHHHHHHHhCC-cCEEEEEE
Confidence 367999999876 558999999999955 467888888887543 333321 112367788877654 3443 1
Q ss_pred ccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcccCCC
Q 011677 383 SRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIKAGAP 445 (479)
Q Consensus 383 ~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik~G~~ 445 (479)
+-++. +++.++---+..+.+++++|++.|+.+.++-. ...++..++..++ ...|+..+.+.+.
T Consensus 95 ~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT 165 (488)
T PRK09389 95 PTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT 165 (488)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 11111 22223333455667778899999998777553 2335566665554 4446777754443
No 106
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=61.26 E-value=1.1e+02 Score=31.32 Aligned_cols=121 Identities=11% Similarity=-0.026 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--------------CCCccCHHHHHHHHhhh--hhh--hcCCccccCHHHHHHH
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--------------PFDKEDWEHTKSVLQIC--QQV--VGDDLLMSNPKRIERA 372 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--------------P~~~~D~~g~~~L~~~~--~~I--~gde~~~t~~~~~~~~ 372 (479)
..++.++..++. +.+++.++..||= |....|++..+++.+.. +.+ +..=- ..+.++++.+
T Consensus 19 ~~f~~~~~~~ia-~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg-~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAIA-AALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPG-IGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHHH-HHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccC-ccCHHHHHHH
Confidence 367899999875 4589999999998 44456777777776654 221 11100 1247888887
Q ss_pred hcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHh---HhhcCCCCcc
Q 011677 373 TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADL---SVGLASGQIK 441 (479)
Q Consensus 373 i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dl---Av~~~~~~ik 441 (479)
.+.+ +|.| .+-. .+.=.-.+.+.+++|++.|+.+.+.-+ +..+.+..++++ +...|+..+.
T Consensus 97 ~~~g-vd~i------ri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 97 YDAG-ARTV------RVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred HHCC-CCEE------EEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEE
Confidence 7664 6777 5433 222234578899999999998754332 223344445544 4556776664
No 107
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=60.69 E-value=42 Score=31.15 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCcc-CHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKE-DWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~-D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+++++.++... +.+.++.+||=.+... ..+..+.+++.. +.|.++.. .+.+++..+++.+ +|++ ..
T Consensus 14 ~~~~~~~~~~~-l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v--~~~~~~~~a~~~G-a~~i------~~- 82 (190)
T cd00452 14 DAEDALALAEA-LIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTV--LTPEQADAAIAAG-AQFI------VS- 82 (190)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeC--CCHHHHHHHHHcC-CCEE------Ec-
Confidence 67788877544 5678999999988644 345567776665 44444442 3488898888777 5665 21
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccC
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAG 443 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G 443 (479)
-+.. .++.+.++.+++++++|..+. + =+.-|...|+.++++-
T Consensus 83 ---p~~~---~~~~~~~~~~~~~~i~gv~t~--~---e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 83 ---PGLD---PEVVKAANRAGIPLLPGVATP--T---EIMQALELGADIVKLF 124 (190)
T ss_pred ---CCCC---HHHHHHHHHcCCcEECCcCCH--H---HHHHHHHCCCCEEEEc
Confidence 0112 356677888899988877521 1 1344556788888873
No 108
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=59.75 E-value=16 Score=37.40 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee-cccCCCCcCccc------cccHHHHHHHHHHHhhCCCeEEEe
Q 011677 347 KSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF-FSRYPSNLWINQ------IGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 347 ~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v-~~~~~~~ik~~~------~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
+++++.. .+|+++.. .| +++.+.+++.+ +|+| .+-=|+-+-.++ ...+|...++++.|+.++++++.-
T Consensus 142 k~ir~~~p~~~viaGNV-~T-~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 142 KLVREAFPEHTIMAGNV-VT-GEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred HHHHhhCCCCeEEEecc-cC-HHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEc
Confidence 3344444 55667764 34 89999998775 6777 000011122222 247899999999999999998764
Q ss_pred cCCCCCchhHHHHhHhhcCCCCcccCCCC
Q 011677 418 HRSGETEDSFIADLSVGLASGQIKAGAPC 446 (479)
Q Consensus 418 h~~get~d~~~~dlAv~~~~~~ik~G~~~ 446 (479)
.......| +=-|+++|+.++-.|++.
T Consensus 219 GGIr~~gD---I~KALA~GAd~VMlG~ll 244 (343)
T TIGR01305 219 GGCTCPGD---VAKAFGAGADFVMLGGMF 244 (343)
T ss_pred CCcCchhH---HHHHHHcCCCEEEECHhh
Confidence 44332222 123556788888888653
No 109
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=59.74 E-value=47 Score=31.73 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecC---CCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhc---CCCCcee--
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDP---FDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATL---IPLAMLF-- 381 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP---~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~---~~a~d~v-- 381 (479)
.++.++.++++ +.+++.++..||=. ..+++++..+++++.. ..+.+-- .....+++..++ ....+.+
T Consensus 10 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 10 AFSTEEKLEIA-KALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALC--RANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp T--HHHHHHHH-HHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEE--ESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred CcCHHHHHHHH-HHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceee--eehHHHHHHHHHhhHhccCCEEEe
Confidence 46888888775 55899999999987 3466777777777766 3332211 123555666443 2234444
Q ss_pred -cccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecC-CCCCchhHHHHhH---hhcCCCCcccC
Q 011677 382 -FSRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SGETEDSFIADLS---VGLASGQIKAG 443 (479)
Q Consensus 382 -~~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~get~d~~~~dlA---v~~~~~~ik~G 443 (479)
++..+. ++..+.-..+..+.+++++|++.|..+.++.. ...++...+.+++ ...++..+.+.
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~ 157 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA 157 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee
Confidence 111110 11111223477888999999999999987764 3445555555544 44477766543
No 110
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.31 E-value=76 Score=30.66 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecCCC---------ccCHHHHHHHHhhh--hhhhcCCccccC-HHHHHHHhcCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDPFD---------KEDWEHTKSVLQIC--QQVVGDDLLMSN-PKRIERATLIPLAM 379 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP~~---------~~D~~g~~~L~~~~--~~I~gde~~~t~-~~~~~~~i~~~a~d 379 (479)
.++.++..+++.. +.+.++.+||=-++ +++++-.+++++.. +++.+- .++ .+.++.+.+.+ .+
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l---~~~~~~~i~~a~~~g-~~ 89 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQAL---VRNREKGIERALEAG-VD 89 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEE---ccCchhhHHHHHhCC-cC
Confidence 5688999887654 67888888885443 45666677777765 443221 122 66677776665 45
Q ss_pred eecccCCCCcCccc-------------cccHHHHHHHHHHHhhCCCeEEEecC-CCC--Cchh---HHHHhHhhcCCCCc
Q 011677 380 LFFSRYPSNLWINQ-------------IGTVTEAIEVVKLANDVPWGVVISHR-SGE--TEDS---FIADLSVGLASGQI 440 (479)
Q Consensus 380 ~v~~~~~~~ik~~~-------------~Ggitea~~i~~~A~~~g~~~~v~h~-~ge--t~d~---~~~dlAv~~~~~~i 440 (479)
.+ .+-..- -+-+..+++.++.|++.|+.+.+.-. ... ++.. -++..+...++..+
T Consensus 90 ~i------~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i 163 (265)
T cd03174 90 EV------RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI 163 (265)
T ss_pred EE------EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 55 333221 23578889999999999999877652 222 3333 35556666778777
Q ss_pred cc
Q 011677 441 KA 442 (479)
Q Consensus 441 k~ 442 (479)
.+
T Consensus 164 ~l 165 (265)
T cd03174 164 SL 165 (265)
T ss_pred Ee
Confidence 54
No 111
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.78 E-value=88 Score=31.25 Aligned_cols=128 Identities=20% Similarity=0.079 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec---------CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCce
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED---------PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAML 380 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd---------P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~ 380 (479)
..++.++-+++. +.+.+.++..||= |-..+.++..+.|.+.- +.+.+ .+.+.++++.+++.+ .|.
T Consensus 21 ~~~s~e~k~~ia-~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~---l~~~~~~ie~A~~~g-~~~ 95 (287)
T PRK05692 21 RFIPTADKIALI-DRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA---LTPNLKGLEAALAAG-ADE 95 (287)
T ss_pred CCcCHHHHHHHH-HHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEE---EecCHHHHHHHHHcC-CCE
Confidence 467899999765 5578999999995 33334455555554422 22211 123688898887664 344
Q ss_pred e---cccCCCCcCccccccH----HHHHHHHHHHhhCCCeEEE------ec-CCCCCchhHHHHh---HhhcCCCCcccC
Q 011677 381 F---FSRYPSNLWINQIGTV----TEAIEVVKLANDVPWGVVI------SH-RSGETEDSFIADL---SVGLASGQIKAG 443 (479)
Q Consensus 381 v---~~~~~~~ik~~~~Ggi----tea~~i~~~A~~~g~~~~v------~h-~~get~d~~~~dl---Av~~~~~~ik~G 443 (479)
+ ++-++...+-+.--+. ..+.+++++|+++|+.+.. ++ ..+.++..+.+++ +...|+..|.+-
T Consensus 96 v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (287)
T PRK05692 96 VAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLG 175 (287)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 4 1221111111222233 3467789999999998641 21 1223445555544 445677777543
No 112
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.69 E-value=38 Score=35.08 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeec-------C-CCccCHHHHHHHHhhh-hhhhcCCcc-----------------ccC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIED-------P-FDKEDWEHTKSVLQIC-QQVVGDDLL-----------------MSN 365 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEd-------P-~~~~D~~g~~~L~~~~-~~I~gde~~-----------------~t~ 365 (479)
..|.+|++++. +++++.++.+|+= | +...++.--+++++.+ +||++--.. .++
T Consensus 231 g~~~~e~~~~~-~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~ 309 (361)
T cd04747 231 ADTPDELEALL-APLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPAS 309 (361)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCC
Confidence 35888888764 5577877766632 2 2222333335566666 775533222 246
Q ss_pred HHHHHHHhcCCCCcee
Q 011677 366 PKRIERATLIPLAMLF 381 (479)
Q Consensus 366 ~~~~~~~i~~~a~d~v 381 (479)
+++..+.++.+.+|.|
T Consensus 310 ~~~a~~~l~~g~~D~V 325 (361)
T cd04747 310 LDRLLERLERGEFDLV 325 (361)
T ss_pred HHHHHHHHHCCCCCee
Confidence 8999999999999998
No 113
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=58.26 E-value=27 Score=36.53 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=61.1
Q ss_pred CHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccC---CCCcCccc----c--ccHHHHHHHHHHHhhC
Q 011677 342 DWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY---PSNLWINQ----I--GTVTEAIEVVKLANDV 410 (479)
Q Consensus 342 D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~---~~~ik~~~----~--Ggitea~~i~~~A~~~ 410 (479)
.++..+.++++. .+|+|++. +| .++.+.+|..+ +|.+ |+ ++-|-..| | +--|...+++.+|+.+
T Consensus 279 qiemik~iK~~yP~l~ViaGNV-VT-~~qa~nLI~aG-aDgL--rVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 279 QLEMIKYIKETYPDLQIIAGNV-VT-KEQAANLIAAG-ADGL--RVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred HHHHHHHHHhhCCCceeeccce-ee-HHHHHHHHHcc-Ccee--EeccccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 345556666666 77888885 45 88899999876 6777 11 11121222 2 2367899999999999
Q ss_pred CCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 411 PWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 411 g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
|++||.-.... +...++ =|+++|+.++-.|+.
T Consensus 354 gvpviADGGiq--~~Ghi~-KAl~lGAstVMmG~l 385 (503)
T KOG2550|consen 354 GVPCIADGGIQ--NVGHVV-KALGLGASTVMMGGL 385 (503)
T ss_pred CCceeecCCcC--ccchhH-hhhhcCchhheecce
Confidence 99987644322 222223 466777777766654
No 114
>PLN02321 2-isopropylmalate synthase
Probab=55.81 E-value=1.3e+02 Score=33.56 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--C-CCccCHHHHHHHHhhh---h------h-hhcCCccccCHHHHHHHhcC--
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--P-FDKEDWEHTKSVLQIC---Q------Q-VVGDDLLMSNPKRIERATLI-- 375 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P-~~~~D~~g~~~L~~~~---~------~-I~gde~~~t~~~~~~~~i~~-- 375 (479)
..+|.+|-++++ +.|++.++..||= | ..+.|++..+.+.+.. + + |++= ...+.+++...++.
T Consensus 103 ~~~s~eeKl~Ia-~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~--~ra~~~dId~A~~al~ 179 (632)
T PLN02321 103 ATLTSKEKLDIA-RQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGL--SRCNKKDIDAAWEAVK 179 (632)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeee--hhccHHhHHHHHHHhc
Confidence 367999999875 5589999999994 5 3578888888886653 1 1 1111 12357777777654
Q ss_pred CC----CceecccCC----CCcCccccccHHHHHHHHHHHhhCCC-eEEEecC-CCCCchhHHHH---hHhhcCCCCccc
Q 011677 376 PL----AMLFFSRYP----SNLWINQIGTVTEAIEVVKLANDVPW-GVVISHR-SGETEDSFIAD---LSVGLASGQIKA 442 (479)
Q Consensus 376 ~a----~d~v~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~-~~~v~h~-~get~d~~~~d---lAv~~~~~~ik~ 442 (479)
++ +.++.+-++ .+++.++---+..+.+++++|+++|. .+..+.- .+.++..++.. .+...|+..|.+
T Consensus 180 ~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 180 HAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI 259 (632)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 11 233321111 12333333444445667889999998 4666652 33455555544 445557777765
Q ss_pred CCCCc
Q 011677 443 GAPCR 447 (479)
Q Consensus 443 G~~~~ 447 (479)
.+..+
T Consensus 260 ~DTvG 264 (632)
T PLN02321 260 PDTVG 264 (632)
T ss_pred ccccc
Confidence 54433
No 115
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=54.50 E-value=1.3e+02 Score=30.97 Aligned_cols=131 Identities=18% Similarity=0.085 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCC--Cc-------cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCce
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPF--DK-------EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAML 380 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~--~~-------~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~ 380 (479)
..++.++-+++. +.|.+.++..||--+ .+ ++.+-.+.+++.. +.+. ..+.+.++++.+++.+ ++.
T Consensus 63 ~~~s~e~Ki~ia-~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~---~l~~n~~die~A~~~g-~~~ 137 (347)
T PLN02746 63 NIVPTSVKVELI-QRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFP---VLTPNLKGFEAAIAAG-AKE 137 (347)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCcee---EEcCCHHHHHHHHHcC-cCE
Confidence 467899988775 457899999999643 22 4444555554422 2111 1223689999988765 343
Q ss_pred e---cccCCCCcCccccccHHHHH----HHHHHHhhCCCeEE--EecCC-----CCCchhHHH---HhHhhcCCCCcccC
Q 011677 381 F---FSRYPSNLWINQIGTVTEAI----EVVKLANDVPWGVV--ISHRS-----GETEDSFIA---DLSVGLASGQIKAG 443 (479)
Q Consensus 381 v---~~~~~~~ik~~~~Ggitea~----~i~~~A~~~g~~~~--v~h~~-----get~d~~~~---dlAv~~~~~~ik~G 443 (479)
| .+-++...+-+.--+..|++ +++++|+++|+.+. ++... +.++..++. .-++..|+..|.+.
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~ 217 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLG 217 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 3 12222222222334556655 68899999999874 22211 223334443 44566678887644
Q ss_pred CCC
Q 011677 444 APC 446 (479)
Q Consensus 444 ~~~ 446 (479)
+..
T Consensus 218 DT~ 220 (347)
T PLN02746 218 DTI 220 (347)
T ss_pred CCc
Confidence 433
No 116
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=54.41 E-value=27 Score=37.58 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=61.7
Q ss_pred HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceec------c-cCCCCcCccccccHHHHHHHHHHHhhCCCeE
Q 011677 344 EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFF------S-RYPSNLWINQIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 344 ~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~------~-~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~ 414 (479)
+..+++++.. +||+++.. .+.+.++.+++.+ +|+|. | .+-..+.---..+++..+++++.|+.+|+++
T Consensus 255 ~~i~~i~~~~~~~~vi~g~~--~t~~~~~~l~~~G-~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~v 331 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVAGNV--VSAEGVRDLLEAG-ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHV 331 (475)
T ss_pred HHHHHHHHHCCCCeEEEecc--CCHHHHHHHHHhC-CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcE
Confidence 4456666665 88888763 3488899988776 57771 0 0000111112356888889999999999998
Q ss_pred EEecCCCCCchhHHHHhHhhcCCCCcccCCCCc
Q 011677 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCR 447 (479)
Q Consensus 415 ~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~ 447 (479)
+...+...+.| +--|.++|+..+-.|.+..
T Consensus 332 iadGgi~~~~d---i~kala~GA~~vm~g~~~a 361 (475)
T TIGR01303 332 WADGGVRHPRD---VALALAAGASNVMVGSWFA 361 (475)
T ss_pred EEeCCCCCHHH---HHHHHHcCCCEEeechhhc
Confidence 77655443322 2334556788888887743
No 117
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.47 E-value=26 Score=36.86 Aligned_cols=95 Identities=7% Similarity=0.094 Sum_probs=55.3
Q ss_pred HHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceec-ccCCCCcCccc----c--ccHHHHHHHHHHHhhCCCeEEE
Q 011677 346 TKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFF-SRYPSNLWINQ----I--GTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 346 ~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~-~~~~~~ik~~~----~--Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+++++++ ++|+..+. .+++..+.+++.+ +|+|- ...|+-+..++ + ..++...++.++++..+++++.
T Consensus 185 v~~ik~~~p~~~vi~g~V--~T~e~a~~l~~aG-aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA 261 (404)
T PRK06843 185 VKKIKTKYPNLDLIAGNI--VTKEAALDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA 261 (404)
T ss_pred HHHHHhhCCCCcEEEEec--CCHHHHHHHHHcC-CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE
Confidence 34444554 55555443 3488888888775 77771 00111111111 1 2567777888888889999876
Q ss_pred ecCCCCCchhHHHHhHhhcCCCCcccCCCC
Q 011677 417 SHRSGETEDSFIADLSVGLASGQIKAGAPC 446 (479)
Q Consensus 417 ~h~~get~d~~~~dlAv~~~~~~ik~G~~~ 446 (479)
........| +--|+++|+..+-.|.+.
T Consensus 262 dGGI~~~~D---i~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 262 DGGIRFSGD---VVKAIAAGADSVMIGNLF 288 (404)
T ss_pred eCCCCCHHH---HHHHHHcCCCEEEEccee
Confidence 554432222 233556678888888773
No 118
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=52.09 E-value=53 Score=35.10 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhC-CceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc--
Q 011677 315 GEDMIEMYKELCADY-PIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI-- 391 (479)
Q Consensus 315 ~~e~i~~~~~ll~~~-~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~-- 391 (479)
..++++.+.+++-+- ..+++|+|-...-+..++.+..++++|--|+.- -+++.+++.+...-..++ -+-+
T Consensus 164 ~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~~~~k~~------y~~P~~ 236 (459)
T COG1167 164 AQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG-IDPEALEEALAQWKPKAV------YVTPTF 236 (459)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC-CCHHHHHHHHhhcCCcEE------EECCCC
Confidence 467888888877664 499999998766555555555555444455532 359999998877656666 3333
Q ss_pred ----cccccHHHHHHHHHHHhhCCCeEE
Q 011677 392 ----NQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 392 ----~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
+-+-+...-.+++++|+++++.++
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 234567778889999999999864
No 119
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=52.07 E-value=1.2e+02 Score=29.75 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee---c
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF---F 382 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v---~ 382 (479)
..++.++.++++. .+.+.++..||=..| +++++.-+.+.+.. ..+.+= ..-+.++++.+.+.+ ++.| +
T Consensus 17 ~~~s~~~k~~i~~-~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~--~r~~~~di~~a~~~g-~~~i~i~~ 92 (262)
T cd07948 17 AFFDTEDKIEIAK-ALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTH--IRCHMDDARIAVETG-VDGVDLVF 92 (262)
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEE--ecCCHHHHHHHHHcC-cCEEEEEE
Confidence 3679999998764 578999999998544 34444445554322 122111 133688888888764 4555 1
Q ss_pred ccCCCCcCccccccHHH----HHHHHHHHhhCCCeEEEecC-CCCCchhHHH---HhHhhcCCCCcc
Q 011677 383 SRYPSNLWINQIGTVTE----AIEVVKLANDVPWGVVISHR-SGETEDSFIA---DLSVGLASGQIK 441 (479)
Q Consensus 383 ~~~~~~ik~~~~Ggite----a~~i~~~A~~~g~~~~v~h~-~get~d~~~~---dlAv~~~~~~ik 441 (479)
+-++...+.+...+..+ +.+++++|++.|+.+.++-. ...+...++. ..+...++..+.
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~ 159 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG 159 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11111222233445555 55566899999999876652 1223334444 444555676664
No 120
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=51.01 E-value=1e+02 Score=31.39 Aligned_cols=112 Identities=13% Similarity=-0.025 Sum_probs=63.4
Q ss_pred HHHHHHhhCCceeeecCC----CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc---
Q 011677 321 MYKELCADYPIVSIEDPF----DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI--- 391 (479)
Q Consensus 321 ~~~~ll~~~~i~~iEdP~----~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~--- 391 (479)
....+++ .++..|+=-+ ++.-.+..++++++. ++|+.... .+++..+.+++.+ +|+| .+-.
T Consensus 98 ~~~~l~e-agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v--~t~~~A~~l~~aG-aD~I------~vg~g~G 167 (325)
T cd00381 98 RAEALVE-AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV--VTAEAARDLIDAG-ADGV------KVGIGPG 167 (325)
T ss_pred HHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC--CCHHHHHHHHhcC-CCEE------EECCCCC
Confidence 4444444 5666665222 122235566777766 77765543 4588888887765 7787 4311
Q ss_pred ----c------ccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 392 ----N------QIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 392 ----~------~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
. -...++...++.+.++..+++++...... +..-+--|.++|+..+-.|..
T Consensus 168 ~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~---~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 168 SICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIR---TSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred cCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCC---CHHHHHHHHHcCCCEEEecch
Confidence 1 12345666677777888899986543322 222223344567777777654
No 121
>PRK06852 aldolase; Validated
Probab=48.90 E-value=52 Score=33.24 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=47.2
Q ss_pred HHHHhcCCC-----CceecccCCCCcCcccc-----ccHHHHHHHHHHHhhCCCeEEEe-cCCCC-----C---chhHHH
Q 011677 369 IERATLIPL-----AMLFFSRYPSNLWINQI-----GTVTEAIEVVKLANDVPWGVVIS-HRSGE-----T---EDSFIA 429 (479)
Q Consensus 369 ~~~~i~~~a-----~d~v~~~~~~~ik~~~~-----Ggitea~~i~~~A~~~g~~~~v~-h~~ge-----t---~d~~~~ 429 (479)
++++++.++ +|+| -+.++.- --+.++-++++.|+++|+++++- .-.|+ . .....+
T Consensus 121 VeeAvrlG~~~~~~AdAV------~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aa 194 (304)
T PRK06852 121 VEQVVEFKENSGLNILGV------GYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAA 194 (304)
T ss_pred HHHHHhcCCccCCCceEE------EEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHH
Confidence 445565553 6777 5544432 24667778888999999998751 11121 1 125677
Q ss_pred HhHhhcCCCCcccCCC
Q 011677 430 DLSVGLASGQIKAGAP 445 (479)
Q Consensus 430 dlAv~~~~~~ik~G~~ 445 (479)
.+|+-+|+.++|+--|
T Consensus 195 RiaaELGADIVKv~y~ 210 (304)
T PRK06852 195 GVAACLGADFVKVNYP 210 (304)
T ss_pred HHHHHHcCCEEEecCC
Confidence 8899999999998877
No 122
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=48.60 E-value=35 Score=36.76 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccC---CCCcCccc------cccHHHHHHHHHHHhhCCC
Q 011677 344 EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY---PSNLWINQ------IGTVTEAIEVVKLANDVPW 412 (479)
Q Consensus 344 ~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~---~~~ik~~~------~Ggitea~~i~~~A~~~g~ 412 (479)
+..++++++. ++|++++. . +.+..+.+++.+ +|+| ++ |+-+-..+ ..-+|...++++.|+++++
T Consensus 257 ~~i~~ik~~~p~~~v~agnv-~-t~~~a~~l~~aG-ad~v--~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~ 331 (479)
T PRK07807 257 EALRAVRALDPGVPIVAGNV-V-TAEGTRDLVEAG-ADIV--KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGA 331 (479)
T ss_pred HHHHHHHHHCCCCeEEeecc-C-CHHHHHHHHHcC-CCEE--EECccCCcccccccccCCchhHHHHHHHHHHHHHhcCC
Confidence 4556667776 78888774 3 489999998876 8888 10 10011111 2457888889999999999
Q ss_pred eEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 413 GVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 413 ~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
+++.-.....+.|. --|.+.|+..+-.|..
T Consensus 332 ~via~ggi~~~~~~---~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 332 HVWADGGVRHPRDV---ALALAAGASNVMIGSW 361 (479)
T ss_pred cEEecCCCCCHHHH---HHHHHcCCCeeeccHh
Confidence 98765544333222 2234456667766654
No 123
>PRK08508 biotin synthase; Provisional
Probab=48.06 E-value=2e+02 Score=28.46 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHhhCC---ceee--ecCCCccCHHHHH----HHHhhh--hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 313 KSGEDMIEMYKELCADYP---IVSI--EDPFDKEDWEHTK----SVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 313 ~t~~e~i~~~~~ll~~~~---i~~i--EdP~~~~D~~g~~----~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
+++++.++.... ..+.+ +.++ ..-+++.+++-+. .+++.. +.+++-.-. .+.+.++++-+.+ +|.+
T Consensus 40 ~s~eeI~~~a~~-a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~-~~~e~l~~Lk~aG-ld~~ 116 (279)
T PRK08508 40 KDIEQIVQEAKM-AKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGT-ASVEQLKELKKAG-IFSY 116 (279)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCC-CCHHHHHHHHHcC-CCEE
Confidence 588999887544 44455 3332 1112333454444 444432 333322212 2477777765544 5555
Q ss_pred cccC---C-CCcCccccccHHHHHHHHHHHhhCCCeE----EEecCCCCCchh
Q 011677 382 FSRY---P-SNLWINQIGTVTEAIEVVKLANDVPWGV----VISHRSGETEDS 426 (479)
Q Consensus 382 ~~~~---~-~~ik~~~~Ggitea~~i~~~A~~~g~~~----~v~h~~get~d~ 426 (479)
--.. + ...+.....+..+.++.++.|++.|+.+ |+|+ |||...
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl--GEt~ed 167 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL--GESWED 167 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec--CCCHHH
Confidence 0000 0 0122333456788889999999999987 5555 787554
No 124
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=47.78 E-value=36 Score=36.97 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=66.9
Q ss_pred HHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceec-ccCCCCcCcccc------ccHHHHHHHHHHHhhCCCeE
Q 011677 344 EHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFF-SRYPSNLWINQI------GTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 344 ~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~-~~~~~~ik~~~~------Ggitea~~i~~~A~~~g~~~ 414 (479)
+..+++++.. ++|++.+. .++++.+.+++.+ +|+|- +.-++.+-.++. ..+|....+.+++++.++++
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v--~t~e~a~~a~~aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpV 354 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNV--VTMYQAQNLIQAG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPV 354 (505)
T ss_pred HHHHHHHHhCCCCcEEEecC--CCHHHHHHHHHcC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeE
Confidence 5567777776 77766553 3589999998765 78870 000111111221 13456667788888899998
Q ss_pred EEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHHHHHHHHHhCCCccccCccc
Q 011677 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475 (479)
Q Consensus 415 ~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~ll~ie~~l~~~~~~~~~~~ 475 (479)
+.........| +--|+++|+..+-.|.. |.+-+|.-+..-...|+.|
T Consensus 355 IadGGI~~~~d---i~kAla~GA~~V~vGs~-----------~~~t~Esp~~~~~~~g~~~ 401 (505)
T PLN02274 355 IADGGISNSGH---IVKALTLGASTVMMGSF-----------LAGTTEAPGEYFYQDGVRV 401 (505)
T ss_pred EEeCCCCCHHH---HHHHHHcCCCEEEEchh-----------hcccccCCcceeeeCCeEE
Confidence 77655433322 23345567888888865 4444554444444455555
No 125
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=47.44 E-value=1.4e+02 Score=32.41 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCC------CCc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIP------LAM 379 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~------a~d 379 (479)
..+|.++-++++ +.|++.++..||=-++ +.|++..+++.+.. ..|++= ...+.+++...++.. .++
T Consensus 18 ~~~s~e~K~~ia-~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al--~r~~~~did~a~~al~~~~~~~v~ 94 (494)
T TIGR00973 18 ASLTVEEKLQIA-LALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGL--ARCVEKDIDAAAEALKPAEKFRIH 94 (494)
T ss_pred CCcCHHHHHHHH-HHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEE--cCCCHHhHHHHHHhccccCCCEEE
Confidence 367999999876 5589999999995543 56777777776544 222211 112467777665431 133
Q ss_pred eecccCC----CCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC-CCchhHHHHh---HhhcCCCCcccCCCC
Q 011677 380 LFFSRYP----SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETEDSFIADL---SVGLASGQIKAGAPC 446 (479)
Q Consensus 380 ~v~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g-et~d~~~~dl---Av~~~~~~ik~G~~~ 446 (479)
++.+-++ ++++.++-.-+..+.+++++|+++|..+.++...+ .++..++..+ +...|+..+.+.+..
T Consensus 95 i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv 169 (494)
T TIGR00973 95 TFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTV 169 (494)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3311111 12222333345556678899999999988877532 3555555544 444577777544433
No 126
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=46.99 E-value=2.6e+02 Score=31.08 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecC-----------CCccCHHHHHHHHhhh--hhh---------hcCCccccC--H
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDP-----------FDKEDWEHTKSVLQIC--QQV---------VGDDLLMSN--P 366 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP-----------~~~~D~~g~~~L~~~~--~~I---------~gde~~~t~--~ 366 (479)
..++.+|++.. .+.+++.++..||== +.+++|+..+.+++.. +++ +|-..+--+ .
T Consensus 22 tr~~~~d~l~i-a~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~ 100 (593)
T PRK14040 22 TRLRLDDMLPI-AAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVE 100 (593)
T ss_pred cccCHHHHHHH-HHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHH
Confidence 36789999976 566899999999982 5688999999999887 553 332221000 2
Q ss_pred HHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEE--Eec-CCCCCchhHHHHhH---hhcCCCCc
Q 011677 367 KRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVV--ISH-RSGETEDSFIADLS---VGLASGQI 440 (479)
Q Consensus 367 ~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~--v~h-~~get~d~~~~dlA---v~~~~~~i 440 (479)
.+++...+. ..|.+ .+-. ...=+..+...+++|++.|..+. +++ .+.+-...+.++++ ...|+..|
T Consensus 101 ~~v~~a~~~-Gid~~------rifd-~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i 172 (593)
T PRK14040 101 RFVERAVKN-GMDVF------RVFD-AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSL 172 (593)
T ss_pred HHHHHHHhc-CCCEE------EEee-eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEE
Confidence 224444443 35666 3321 11224677788899999999742 333 13333455665554 45577777
Q ss_pred ccC
Q 011677 441 KAG 443 (479)
Q Consensus 441 k~G 443 (479)
.+-
T Consensus 173 ~i~ 175 (593)
T PRK14040 173 CIK 175 (593)
T ss_pred EEC
Confidence 433
No 127
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.01 E-value=1e+02 Score=31.76 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-------cCC---CccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-------DPF---DKEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-------dP~---~~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
..+.+|.+++. +.+++.++.||+ .+. +...+..++.+++.+ +||++--- +++++++.+.++.+ +
T Consensus 231 g~~~ee~~~i~-~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg-i~t~e~ae~~l~~g-a 307 (353)
T cd04735 231 GIRMEDTLALV-DKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS-INTPDDALEALETG-A 307 (353)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC-CCCHHHHHHHHHcC-C
Confidence 45788888765 567888888876 111 111344455565553 56554322 24588899988874 7
Q ss_pred cee
Q 011677 379 MLF 381 (479)
Q Consensus 379 d~v 381 (479)
|.|
T Consensus 308 D~V 310 (353)
T cd04735 308 DLV 310 (353)
T ss_pred ChH
Confidence 877
No 128
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=44.94 E-value=44 Score=33.76 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhCCceee-------ecCCC-ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 315 GEDMIEMYKELCADYPIVSI-------EDPFD-KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 315 ~~e~i~~~~~ll~~~~i~~i-------EdP~~-~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
.++.+++. +.+++.|+.+| +|... +-||+..+++++.+ +||++.-- +++++++.+.++.-.+|.|
T Consensus 137 ~~~~~~~~-~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGd-I~s~~d~~~~~~~tg~dgv 210 (309)
T PF01207_consen 137 PEETIEFA-RILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGD-IFSPEDAERMLEQTGADGV 210 (309)
T ss_dssp CHHHHHHH-HHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS---SHHHHHHHCCCH-SSEE
T ss_pred hhHHHHHH-HHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCc-cCCHHHHHHHHHhcCCcEE
Confidence 46677764 56788998877 34433 67999999999999 99775553 3569999999887567777
No 129
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=44.55 E-value=45 Score=32.42 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhc-CCCCcccCC--
Q 011677 368 RIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGL-ASGQIKAGA-- 444 (479)
Q Consensus 368 ~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~-~~~~ik~G~-- 444 (479)
.++..++.+.+|+| .+.-.+.|+-...-++....+...+++.+|+....-+..-+-++|=|. =...+|-|+
T Consensus 168 ~v~dtver~~aDaV------I~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~ 241 (263)
T COG0434 168 AVKDTVERGLADAV------IVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVT 241 (263)
T ss_pred HHHHHHHccCCCEE------EEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEe
Confidence 34556788899999 999999999998888888888888999998865444445556666555 346788888
Q ss_pred --CCchhHHHHhHHHH
Q 011677 445 --PCRGERLAKYNQLL 458 (479)
Q Consensus 445 --~~~~er~~kyn~ll 458 (479)
|...||..++=++.
T Consensus 242 ~n~VD~~Rv~~~v~~a 257 (263)
T COG0434 242 WNPVDLERVRRFVEAA 257 (263)
T ss_pred cCccCHHHHHHHHHHH
Confidence 88999987665543
No 130
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=44.48 E-value=95 Score=30.41 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecC-CCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDP-FDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP-~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
.+++.+++..|.+. -.-.|.-+=|| +-..+++.++++++.+ +||.--|.. .++.++.+.-.. .+|+| ++
T Consensus 60 ~~d~~~~A~~y~~~-GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFI-id~~QI~ea~~~-GADav------LL 130 (247)
T PRK13957 60 DYHPVQIAKTYETL-GASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFI-LDEIQIREARAF-GASAI------LL 130 (247)
T ss_pred CCCHHHHHHHHHHC-CCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEecccc-CCHHHHHHHHHc-CCCEE------Ee
Confidence 34677666554331 11125555555 6788999999999999 999988854 569999988764 47888 66
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
-..-.+ -.+..+..+.|+..|+.+++--.
T Consensus 131 I~~~L~-~~~l~~l~~~a~~lGle~LVEVh 159 (247)
T PRK13957 131 IVRILT-PSQIKSFLKHASSLGMDVLVEVH 159 (247)
T ss_pred EHhhCC-HHHHHHHHHHHHHcCCceEEEEC
Confidence 444433 34678889999999999987543
No 131
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=43.44 E-value=1.1e+02 Score=30.06 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCceeee----------cCCCc-cCHHH----HHHHHhhh-hhhhcCCccccCHHHHHHHh
Q 011677 310 QNFKSGEDMIEMYKELCADYPIVSIE----------DPFDK-EDWEH----TKSVLQIC-QQVVGDDLLMSNPKRIERAT 373 (479)
Q Consensus 310 ~~~~t~~e~i~~~~~ll~~~~i~~iE----------dP~~~-~D~~g----~~~L~~~~-~~I~gde~~~t~~~~~~~~i 373 (479)
+...+.+++++...+++++ +-.+|. +|+++ ++++- .+.|++.+ +||+-|-. +++-++.++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~-GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~---~~~v~e~al 93 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAE-GADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTF---RAEVARAAL 93 (257)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC---CHHHHHHHH
Confidence 3455778888877666554 333332 12222 22222 24455454 88888853 588899999
Q ss_pred cCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCC
Q 011677 374 LIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGE 422 (479)
Q Consensus 374 ~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~ge 422 (479)
+.+ +++| | -+.|..+=-+++.+++++|..+++-|..|.
T Consensus 94 ~~G-~~iI------N----disg~~~~~~~~~l~~~~~~~vV~m~~~g~ 131 (257)
T cd00739 94 EAG-ADII------N----DVSGGSDDPAMLEVAAEYGAPLVLMHMRGT 131 (257)
T ss_pred HhC-CCEE------E----eCCCCCCChHHHHHHHHcCCCEEEECCCCC
Confidence 876 7887 3 222322114677888999999999887543
No 132
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=42.04 E-value=1.3e+02 Score=28.50 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh-hh-hhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC-QQ-VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~-~~-I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++.+.. +.+-+.++..||=.+...+. +..++|+++. .+ ++|=- .+.+.++++..++.+ ++++ ..
T Consensus 20 ~~~~~~~~~-~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaG-TV~~~~~~~~a~~aG-A~fi------vs- 89 (206)
T PRK09140 20 TPDEALAHV-GALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAG-TVLSPEQVDRLADAG-GRLI------VT- 89 (206)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEE-ecCCHHHHHHHHHcC-CCEE------EC-
Confidence 677888765 44667899999999875554 4677777765 32 22222 245689999998887 4776 22
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
++. -.++.+.++..|+.+++|+.+. ++ +.-|...|+.++|+
T Consensus 90 ----p~~--~~~v~~~~~~~~~~~~~G~~t~-~E----~~~A~~~Gad~vk~ 130 (206)
T PRK09140 90 ----PNT--DPEVIRRAVALGMVVMPGVATP-TE----AFAALRAGAQALKL 130 (206)
T ss_pred ----CCC--CHHHHHHHHHCCCcEEcccCCH-HH----HHHHHHcCCCEEEE
Confidence 122 1256666778899887776432 11 34455677888875
No 133
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.77 E-value=1.9e+02 Score=27.21 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred CccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEe
Q 011677 339 DKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 339 ~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
...+++.++.+++.+ +||...+ +..++++++.+.+.+ +|.+ .+...-.. .....++.+.+...|+.+++.
T Consensus 57 ~~g~~~~~~~i~~~v~iPi~~~~-~i~~~~~v~~~~~~G-ad~v------~l~~~~~~-~~~~~~~~~~~~~~g~~~~v~ 127 (217)
T cd00331 57 FQGSLEDLRAVREAVSLPVLRKD-FIIDPYQIYEARAAG-ADAV------LLIVAALD-DEQLKELYELARELGMEVLVE 127 (217)
T ss_pred cCCCHHHHHHHHHhcCCCEEECC-eecCHHHHHHHHHcC-CCEE------EEeeccCC-HHHHHHHHHHHHHcCCeEEEE
Confidence 346888999999988 8877555 455677888887776 6666 43222221 356667777778888887765
Q ss_pred cC
Q 011677 418 HR 419 (479)
Q Consensus 418 h~ 419 (479)
..
T Consensus 128 v~ 129 (217)
T cd00331 128 VH 129 (217)
T ss_pred EC
Confidence 53
No 134
>PRK08227 autoinducer 2 aldolase; Validated
Probab=40.34 E-value=1e+02 Score=30.57 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=46.0
Q ss_pred HHHHhcCCCCceecccCCCCcCccc-----cccHHHHHHHHHHHhhCCCeEEEecCCCCC------chhHHHHhHhhcCC
Q 011677 369 IERATLIPLAMLFFSRYPSNLWINQ-----IGTVTEAIEVVKLANDVPWGVVISHRSGET------EDSFIADLSVGLAS 437 (479)
Q Consensus 369 ~~~~i~~~a~d~v~~~~~~~ik~~~-----~Ggitea~~i~~~A~~~g~~~~v~h~~get------~d~~~~dlAv~~~~ 437 (479)
++++++.+ +|+| -..++. .--+.++-++++.|+++|+++++-.-.|+. -.+..+.+|+-+|+
T Consensus 100 VeeAvrlG-AdAV------~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLN-ACAV------AAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCC-CCEE------EEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 33444444 6676 444433 224666777788899999998874433331 12567888899999
Q ss_pred CCcccCCC
Q 011677 438 GQIKAGAP 445 (479)
Q Consensus 438 ~~ik~G~~ 445 (479)
.++|+--|
T Consensus 173 DiVK~~y~ 180 (264)
T PRK08227 173 QIIKTYYV 180 (264)
T ss_pred CEEecCCC
Confidence 99997766
No 135
>PRK12928 lipoyl synthase; Provisional
Probab=39.82 E-value=2.3e+02 Score=28.29 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhhCCcee--e----ecCCCccCHHHHHHHHhhh---hh-----hhcCCccccCHHHHHHHhcCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVS--I----EDPFDKEDWEHTKSVLQIC---QQ-----VVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~--i----EdP~~~~D~~g~~~L~~~~---~~-----I~gde~~~t~~~~~~~~i~~~a 377 (479)
.++.+|..+.... +.+.++.. | .|.++..+.+.|.+|-+.+ .| ++.-+......+.++.+.+.+
T Consensus 86 ~~~~eei~~~a~~-~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag- 163 (290)
T PRK12928 86 PLDPDEPERVAEA-VAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK- 163 (290)
T ss_pred CCCHHHHHHHHHH-HHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC-
Confidence 3577888776544 55555332 1 2444333345566665554 12 111111100245566665544
Q ss_pred Cceec---ccCCC-CcCccccccHHHHHHHHHHHhhCC--C----eEEEecCCCCCchhHHHHhHh--hcCCCCcccCCC
Q 011677 378 AMLFF---SRYPS-NLWINQIGTVTEAIEVVKLANDVP--W----GVVISHRSGETEDSFIADLSV--GLASGQIKAGAP 445 (479)
Q Consensus 378 ~d~v~---~~~~~-~ik~~~~Ggitea~~i~~~A~~~g--~----~~~v~h~~get~d~~~~dlAv--~~~~~~ik~G~~ 445 (479)
++++- .-++. .-++++-.+..+++++++.|++.| + .+|+|| |||.+.+.-++.. .++..++..|.-
T Consensus 164 ~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~d~v~i~~Y 241 (290)
T PRK12928 164 PDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL--GETEDEVIETLRDLRAVGCDRLTIGQY 241 (290)
T ss_pred chhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 33330 00000 233455678999999999999988 4 355776 8998876665544 345555555442
Q ss_pred Cc----------hhHHHHhHHHHHHHHHhCCCccccCc
Q 011677 446 CR----------GERLAKYNQLLHIEEELGDHAIYAGE 473 (479)
Q Consensus 446 ~~----------~er~~kyn~ll~ie~~l~~~~~~~~~ 473 (479)
.+ --.=..+-++-++..++|=..+.+|+
T Consensus 242 l~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p 279 (290)
T PRK12928 242 LRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGP 279 (290)
T ss_pred CCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecC
Confidence 22 11123445555567777755555553
No 136
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=39.18 E-value=57 Score=34.32 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc--cccccHHHHHHHHHHHhhCC
Q 011677 340 KEDWEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI--NQIGTVTEAIEVVKLANDVP 411 (479)
Q Consensus 340 ~~D~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~--~~~Ggitea~~i~~~A~~~g 411 (479)
+..+--|.+++++. +|+- ++-. -..+.+++.+..+ +..| -+.. |..|++++..+|+++|+++|
T Consensus 122 ~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~-~~~~~~~~~i~~~-Tklv------ais~vSn~tG~~~pv~~I~~la~~~g 192 (405)
T COG0520 122 HSNIVPWQELAKRTGAKVRVIPLD-DDGL-LDLDALEKLITPK-TKLV------ALSHVSNVTGTVNPVKEIAELAHEHG 192 (405)
T ss_pred hhhHHHHHHHHHhcCcEEEEEecC-CCCC-cCHHHHHHhcCCC-ceEE------EEECccccccccchHHHHHHHHHHcC
Confidence 46789999999874 5655 4433 2477788766543 4444 3333 67899999999999999999
Q ss_pred CeEEE
Q 011677 412 WGVVI 416 (479)
Q Consensus 412 ~~~~v 416 (479)
..+++
T Consensus 193 a~v~V 197 (405)
T COG0520 193 ALVLV 197 (405)
T ss_pred CEEEE
Confidence 88775
No 137
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=38.77 E-value=82 Score=30.98 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhhCCceee-ecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSI-EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~i-EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
..++.++...|.+. -.-.|.-+ |.++-...++.++.+++.+ +|+.-.|.. -++.++.+.-..+ +|+| .+
T Consensus 67 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFI-id~~QI~eA~~~G-ADaV------LL 137 (254)
T PF00218_consen 67 DFDPAEIAKAYEEA-GAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFI-IDPYQIYEARAAG-ADAV------LL 137 (254)
T ss_dssp S-SHHHHHHHHHHT-T-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES----SHHHHHHHHHTT--SEE------EE
T ss_pred cCCHHHHHHHHHhc-CCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCC-CCHHHHHHHHHcC-CCEe------eh
Confidence 34677777666441 11225444 4557788999999999999 999888865 4599998876665 7777 66
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
=..-.+ -....+..++|+..|+.+.+--.
T Consensus 138 I~~~L~-~~~l~~l~~~a~~lGle~lVEVh 166 (254)
T PF00218_consen 138 IAAILS-DDQLEELLELAHSLGLEALVEVH 166 (254)
T ss_dssp EGGGSG-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred hHHhCC-HHHHHHHHHHHHHcCCCeEEEEC
Confidence 444433 34567889999999999988543
No 138
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=38.64 E-value=1e+02 Score=31.76 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=50.6
Q ss_pred HHHHhcCCCCceecccCCCCcCccc-----cccHHHHHHHHHHHhhCCCeEEEec-CCCC-----C-------chhHHHH
Q 011677 369 IERATLIPLAMLFFSRYPSNLWINQ-----IGTVTEAIEVVKLANDVPWGVVISH-RSGE-----T-------EDSFIAD 430 (479)
Q Consensus 369 ~~~~i~~~a~d~v~~~~~~~ik~~~-----~Ggitea~~i~~~A~~~g~~~~v~h-~~ge-----t-------~d~~~~d 430 (479)
++++++.+ +|+| -..++. .--+.++-+++..|+++|+++++-. --|+ . -.+..++
T Consensus 152 VedAlrLG-AdAV------~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaR 224 (348)
T PRK09250 152 VEDALRLG-AVAV------GATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANH 224 (348)
T ss_pred HHHHHHCC-CCEE------EEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHH
Confidence 44455554 6666 444433 2246677788889999999987622 1121 1 1257899
Q ss_pred hHhhcCCCCcccCCCCchhHHHH
Q 011677 431 LSVGLASGQIKAGAPCRGERLAK 453 (479)
Q Consensus 431 lAv~~~~~~ik~G~~~~~er~~k 453 (479)
+|+-+|+.++|+--|...+...+
T Consensus 225 iaaELGADIVKv~yp~~~~~f~~ 247 (348)
T PRK09250 225 LAATIGADIIKQKLPTNNGGYKA 247 (348)
T ss_pred HHHHHcCCEEEecCCCChhhHHH
Confidence 99999999999888754444433
No 139
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=38.26 E-value=1.6e+02 Score=31.58 Aligned_cols=121 Identities=20% Similarity=0.289 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh---hhhhcCCccccCHHHHHHHhcC--CC----C
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC---QQVVGDDLLMSNPKRIERATLI--PL----A 378 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~--~a----~ 378 (479)
..++++|.+++. +.+.++++..||=-|+ ++|++.-+...+.. +-|++= .....++++..++. ++ +
T Consensus 74 a~~~~~qK~eia-r~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~g~~~~I~~l--~rc~~~di~~tvEAl~~aKr~~V 150 (560)
T KOG2367|consen 74 AFLTTEQKLEIA-RQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTLGYVPVICTL--IRCHMDDIERTVEALKYAKRPRV 150 (560)
T ss_pred CcCCcHHHHHHH-HHHHhcCcCEEEecCcccCcchHHHHHHHHHhCCCCceEEEe--eccchHHHHHHHHHhhccCcceE
Confidence 367899999875 5688999999998776 56777777766654 223332 12235666665433 22 4
Q ss_pred ceecccC----CCCcCccccccHHHHHHHHHHHhhCC-CeEEEec-CCCCCchhHHHHhHhh
Q 011677 379 MLFFSRY----PSNLWINQIGTVTEAIEVVKLANDVP-WGVVISH-RSGETEDSFIADLSVG 434 (479)
Q Consensus 379 d~v~~~~----~~~ik~~~~Ggitea~~i~~~A~~~g-~~~~v~h-~~get~d~~~~dlAv~ 434 (479)
+.+.+-+ -|.++-++--.|.-+.+..+++++.| |.+-.|. ..+.|+-.|+..+-=+
T Consensus 151 h~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~a 212 (560)
T KOG2367|consen 151 HVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILGA 212 (560)
T ss_pred EEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECccccccCcHHHHHHHHHH
Confidence 4443222 23445566677888889999999999 8877766 4566777777776443
No 140
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=38.12 E-value=2.7e+02 Score=28.48 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHH
Q 011677 321 MYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEA 400 (479)
Q Consensus 321 ~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea 400 (479)
.+.+++++-++.++--||+....+-+..+.-....|...|. ++..-++.....+- -+ .+. +=+-+++|.
T Consensus 94 ~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~--~~~plik~iA~~~k--Pi------IlS-TGma~~~ei 162 (347)
T COG2089 94 QLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI--NDLPLIKYIAKKGK--PI------ILS-TGMATIEEI 162 (347)
T ss_pred HHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc--cChHHHHHHHhcCC--CE------EEE-cccccHHHH
Confidence 45677889999999999987665555444222234566664 34555555444332 22 222 223456666
Q ss_pred HHHHHHHhhCCCe
Q 011677 401 IEVVKLANDVPWG 413 (479)
Q Consensus 401 ~~i~~~A~~~g~~ 413 (479)
.++++.++++|.+
T Consensus 163 ~~av~~~r~~g~~ 175 (347)
T COG2089 163 EEAVAILRENGNP 175 (347)
T ss_pred HHHHHHHHhcCCC
Confidence 6777777777766
No 141
>PRK08960 hypothetical protein; Provisional
Probab=38.00 E-value=1.2e+02 Score=31.21 Aligned_cols=96 Identities=15% Similarity=-0.004 Sum_probs=58.6
Q ss_pred HHHHHHHHHH-HhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc-
Q 011677 316 EDMIEMYKEL-CADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI- 391 (479)
Q Consensus 316 ~e~i~~~~~l-l~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~- 391 (479)
.+++...... +++-+-+.+++|-.+.-...+..+...+ +|+-.+..+.-+++.+++.+..+..-++ ...+
T Consensus 102 ~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~------i~~p~ 175 (387)
T PRK08960 102 SGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGAL------VASPA 175 (387)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEE------EECCC
Confidence 4555444443 3444578899998877766666554444 5542222223357888887766544344 3333
Q ss_pred ccccc---HHHHHHHHHHHhhCCCeEEEe
Q 011677 392 NQIGT---VTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 392 ~~~Gg---itea~~i~~~A~~~g~~~~v~ 417 (479)
|-.|. ..+..+++++|+++|+.+++-
T Consensus 176 NPtG~~~~~~~~~~l~~~~~~~~~~li~D 204 (387)
T PRK08960 176 NPTGTLLSRDELAALSQALRARGGHLVVD 204 (387)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 33443 457888899999999887654
No 142
>PLN02979 glycolate oxidase
Probab=37.68 E-value=1e+02 Score=32.07 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccc----cccHHHHHHHHHHHhh--CCC
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQ----IGTVTEAIEVVKLAND--VPW 412 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~----~Ggitea~~i~~~A~~--~g~ 412 (479)
.-+|+..++|++.. +||+.-+.. ++++++++++.+ +|.| .+.-.- -++++-+.-+.+++++ ..+
T Consensus 209 ~ltW~dl~wlr~~~~~PvivKgV~--~~~dA~~a~~~G-vd~I------~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~ 279 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILVKGVL--TGEDARIAIQAG-AAGI------IVSNHGARQLDYVPATISALEEVVKATQGRI 279 (366)
T ss_pred CCCHHHHHHHHhccCCCEEeecCC--CHHHHHHHHhcC-CCEE------EECCCCcCCCCCchhHHHHHHHHHHHhCCCC
Confidence 34788899999999 998888863 599999998887 6666 433221 1112222222223333 347
Q ss_pred eEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 413 GVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 413 ~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
+++++...... -+ +-=|+++|+..+-.|.|
T Consensus 280 ~Vi~dGGIr~G-~D--i~KALALGAdaV~iGrp 309 (366)
T PLN02979 280 PVFLDGGVRRG-TD--VFKALALGASGIFIGRP 309 (366)
T ss_pred eEEEeCCcCcH-HH--HHHHHHcCCCEEEEcHH
Confidence 77776643222 11 12255667777666554
No 143
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.66 E-value=2.5e+02 Score=30.07 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecC-----------CCccCHHHHHHHHhhh--hhhh---------cCCcccc--CH
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDP-----------FDKEDWEHTKSVLQIC--QQVV---------GDDLLMS--NP 366 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP-----------~~~~D~~g~~~L~~~~--~~I~---------gde~~~t--~~ 366 (479)
..++.++++... +.+++.++..||== +.+++|+-.+.+++.. +++. |-..+-. ..
T Consensus 21 ~~~~t~dkl~ia-~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 21 TRMTTEEMLPIL-EKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred cccCHHHHHHHH-HHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 367889999865 55889999999985 5678888999998875 4331 2111100 13
Q ss_pred HHHHHHhcCCCCceecccCCCCcCc--cccccHHHHHHHHHHHhhCCCeEE--EecCCC-CCchhHHHHhH---hhcCCC
Q 011677 367 KRIERATLIPLAMLFFSRYPSNLWI--NQIGTVTEAIEVVKLANDVPWGVV--ISHRSG-ETEDSFIADLS---VGLASG 438 (479)
Q Consensus 367 ~~~~~~i~~~a~d~v~~~~~~~ik~--~~~Ggitea~~i~~~A~~~g~~~~--v~h~~g-et~d~~~~dlA---v~~~~~ 438 (479)
.+++.+++.+ +|.+ .+=. +. +....+++++|+++|..+. ++...+ -++..+.+++| +..|+.
T Consensus 100 ~~v~~A~~~G-vd~i------rif~~lnd---~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad 169 (448)
T PRK12331 100 SFVQKSVENG-IDII------RIFDALND---VRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGAD 169 (448)
T ss_pred HHHHHHHHCC-CCEE------EEEEecCc---HHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4455666554 5666 3322 22 2357778889999998743 344322 23444555544 455777
Q ss_pred CcccCCC
Q 011677 439 QIKAGAP 445 (479)
Q Consensus 439 ~ik~G~~ 445 (479)
.|.+-+.
T Consensus 170 ~I~i~Dt 176 (448)
T PRK12331 170 SICIKDM 176 (448)
T ss_pred EEEEcCC
Confidence 7754443
No 144
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=37.18 E-value=1.1e+02 Score=30.47 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhCC-ceeeecCCCccCHHHHHHHHhhhhhhhcCCccccCHHHHHHHhcCC---CCceecccCCC---
Q 011677 315 GEDMIEMYKELCADYP-IVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMSNPKRIERATLIP---LAMLFFSRYPS--- 387 (479)
Q Consensus 315 ~~e~i~~~~~ll~~~~-i~~iEdP~~~~D~~g~~~L~~~~~~I~gde~~~t~~~~~~~~i~~~---a~d~v~~~~~~--- 387 (479)
.+.+.+.++++.++.| +.|+=||+--|+ --.--++++-..-++. .+|++ +|-
T Consensus 96 l~~i~~iv~~lk~~np~~~wv~DPVmGDn------------------G~lYV~eelipvYr~~i~~ladii---TPNqFE 154 (308)
T KOG2599|consen 96 LQKIADIVKKLKKKNPNLTWVCDPVMGDN------------------GRLYVPEELIPVYRDLIIPLADII---TPNQFE 154 (308)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCccccCC------------------ccEeccHHHHHHHHHhhcchhhhc---CCcchh
Confidence 4567777788777777 999999975442 1100112221111111 12222 111
Q ss_pred --CcCccccccHHHHHHHHHHHhhCCCeEEE
Q 011677 388 --NLWINQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 388 --~ik~~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+.-..+-+..+++++.+.-++.|++.+|
T Consensus 155 ~EiLtg~~I~t~eda~~a~~~lhq~~v~~vV 185 (308)
T KOG2599|consen 155 AEILTGMEIRTEEDAKRAVEKLHQKGVKTVV 185 (308)
T ss_pred hhhhcCCeeccHHHHHHHHHHHHHhCCCEEE
Confidence 23335678899999999999999887665
No 145
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=36.79 E-value=2.6e+02 Score=27.57 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhhCC---ceeee-cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCC
Q 011677 312 FKSGEDMIEMYKELCADYP---IVSIE-DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~---i~~iE-dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~ 386 (479)
.+++.+.+..| ++++ |..+= .++-...++.++.+++.+ +||.--|.. -++.++..+-..+ +|+|
T Consensus 65 d~dp~~ia~~Y----e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFi-iD~yQI~~Ar~~G-ADav----- 133 (254)
T COG0134 65 DFDPVEIAKAY----EEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFI-IDPYQIYEARAAG-ADAV----- 133 (254)
T ss_pred cCCHHHHHHHH----HHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCC-CCHHHHHHHHHcC-cccH-----
Confidence 34666655554 4454 55554 456688999999999999 998888854 4688888875554 7777
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
++=+.-. +=.+..+..+.|++.|+.+.+--
T Consensus 134 -LLI~~~L-~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 134 -LLIVAAL-DDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred -HHHHHhc-CHHHHHHHHHHHHHcCCeeEEEE
Confidence 5533332 23457889999999999998744
No 146
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=36.77 E-value=5e+02 Score=27.97 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec----C-------CCccCHHHHHHHHhhh--hhh----hcCCccccC--HHH---
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED----P-------FDKEDWEHTKSVLQIC--QQV----VGDDLLMSN--PKR--- 368 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd----P-------~~~~D~~g~~~L~~~~--~~I----~gde~~~t~--~~~--- 368 (479)
.+++.+|++.. ...+++.++..||= - +.+++|+-++.+++.+ +++ -|-.+.... +++
T Consensus 30 tr~~t~d~l~i-a~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~ 108 (468)
T PRK12581 30 TRLSIEDMLPV-LTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVD 108 (468)
T ss_pred cCCCHHHHHHH-HHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHH
Confidence 36788999976 45689999999997 2 4578999999999877 332 242221111 234
Q ss_pred --HHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeE--EEecC-CCCCchhHHHHh---HhhcCCCCc
Q 011677 369 --IERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGV--VISHR-SGETEDSFIADL---SVGLASGQI 440 (479)
Q Consensus 369 --~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~--~v~h~-~get~d~~~~dl---Av~~~~~~i 440 (479)
++.+. ...+|++ .+=- .+.=+..+...++.+++.|..+ ++++. +...+..+.+++ ++..|+..|
T Consensus 109 ~fv~~a~-~~Gidi~------Rifd-~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I 180 (468)
T PRK12581 109 KFISLSA-QNGIDVF------RIFD-ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSI 180 (468)
T ss_pred HHHHHHH-HCCCCEE------EEcc-cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEE
Confidence 33333 3446776 3311 2234667777888899999884 45553 333344555554 455677777
Q ss_pred ccCCCCc
Q 011677 441 KAGAPCR 447 (479)
Q Consensus 441 k~G~~~~ 447 (479)
.+.+..+
T Consensus 181 ~IkDtaG 187 (468)
T PRK12581 181 CIKDMAG 187 (468)
T ss_pred EECCCCC
Confidence 5444433
No 147
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=36.64 E-value=2.7e+02 Score=27.32 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhh-CCceeee-----cC--CCccCHHHHHHHHhh----h--hhhhcCCccccCHHHHH
Q 011677 305 PNKSGQNFKSGEDMIEMYKELCAD-YPIVSIE-----DP--FDKEDWEHTKSVLQI----C--QQVVGDDLLMSNPKRIE 370 (479)
Q Consensus 305 ~~~~~~~~~t~~e~i~~~~~ll~~-~~i~~iE-----dP--~~~~D~~g~~~L~~~----~--~~I~gde~~~t~~~~~~ 370 (479)
||+.+ -.|++|++.. .++..+ ++..||- || +-+|..+-.+.-+.- + +|.|.|+.. ..+
T Consensus 67 pNTaG--~~ta~eAv~~-a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~-----~ar 138 (248)
T cd04728 67 PNTAG--CRTAEEAVRT-ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPV-----LAK 138 (248)
T ss_pred CCCCC--CCCHHHHHHH-HHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHH-----HHH
Confidence 55433 6799999965 566655 4566653 33 234444444333333 2 778888853 344
Q ss_pred HHhcCCCCceecccCCCCc--Cc--cccccHHHHHHHHHHHhhCCCeEEEecCCCCCch
Q 011677 371 RATLIPLAMLFFSRYPSNL--WI--NQIGTVTEAIEVVKLANDVPWGVVISHRSGETED 425 (479)
Q Consensus 371 ~~i~~~a~d~v~~~~~~~i--k~--~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d 425 (479)
++.+. .|++| .+ .+ +.. |++.---+-.+.+..++++++..+.+..+|
T Consensus 139 ~l~~~-G~~~v------mPlg~pIGsg~-Gi~~~~~I~~I~e~~~vpVI~egGI~tped 189 (248)
T cd04728 139 RLEDA-GCAAV------MPLGSPIGSGQ-GLLNPYNLRIIIERADVPVIVDAGIGTPSD 189 (248)
T ss_pred HHHHc-CCCEe------CCCCcCCCCCC-CCCCHHHHHHHHHhCCCcEEEeCCCCCHHH
Confidence 44444 68888 66 22 222 353322222444557899998887665544
No 148
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.23 E-value=1.5e+02 Score=28.99 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec----------CCCcc-CHHHH----HHHHhhh-hhhhcCCccccCHHHHHHHhc
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED----------PFDKE-DWEHT----KSVLQIC-QQVVGDDLLMSNPKRIERATL 374 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd----------P~~~~-D~~g~----~~L~~~~-~~I~gde~~~t~~~~~~~~i~ 374 (479)
...+.+++++...++++ .+-.+|.= |+.++ +++-. +.+++.+ +||+.|- .+++-++.+++
T Consensus 18 ~~~~~~~~~~~a~~~~~-~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al~ 93 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLE-EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAALE 93 (257)
T ss_pred CCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHH
Confidence 34577888887666554 44333321 22222 21112 2333344 7888885 35898999998
Q ss_pred CCCCceecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCC
Q 011677 375 IPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG 421 (479)
Q Consensus 375 ~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~g 421 (479)
.+ +++| |-+.+.. .-+++.+++++|.++++-|+.|
T Consensus 94 ~G-~~iI----------Nsis~~~-~~~~~~l~~~~~~~vV~m~~~g 128 (257)
T TIGR01496 94 AG-ADII----------NDVSGGQ-DPAMLEVAAEYGVPLVLMHMRG 128 (257)
T ss_pred cC-CCEE----------EECCCCC-CchhHHHHHHcCCcEEEEeCCC
Confidence 74 7777 3333332 3357777889999999988654
No 149
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=36.23 E-value=4.5e+02 Score=28.75 Aligned_cols=132 Identities=14% Similarity=0.062 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--CC-CccCHHHHHHHHhhh---hhhh--c----CCccccCHHHHHHHhcCCC-
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--PF-DKEDWEHTKSVLQIC---QQVV--G----DDLLMSNPKRIERATLIPL- 377 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P~-~~~D~~g~~~L~~~~---~~I~--g----de~~~t~~~~~~~~i~~~a- 377 (479)
..+|.+|-++++ +.|.+.++.+||= |. .+.|++..+++.+.- ..|+ + .+..+.+.+.++.++..+.
T Consensus 18 ~~~s~eeKl~Ia-~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~ 96 (526)
T TIGR00977 18 VSFSLEDKIRIA-ERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETP 96 (526)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCC
Confidence 467999999876 5589999999998 54 478888888886421 1111 1 1111122334555544332
Q ss_pred -CceecccCCC----CcCccccccHHHHHHHHHHHhhCCCeEEEecC---CC-CCchhHHHHhH---hhcCCCCcccC
Q 011677 378 -AMLFFSRYPS----NLWINQIGTVTEAIEVVKLANDVPWGVVISHR---SG-ETEDSFIADLS---VGLASGQIKAG 443 (479)
Q Consensus 378 -~d~v~~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~---~g-et~d~~~~dlA---v~~~~~~ik~G 443 (479)
++++.+-++. +++.++---+..+.+++++|+++|..+..+.. -+ .++..++.+++ ...|+..+.+.
T Consensus 97 ~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 97 VVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred EEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 2222111111 22223333444455668899999999765443 11 34555555554 44467666543
No 150
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=36.15 E-value=1.8e+02 Score=24.05 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=49.6
Q ss_pred HhhCCceeeecCCCccCHHHHHHHHh--hh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHH
Q 011677 326 CADYPIVSIEDPFDKEDWEHTKSVLQ--IC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAI 401 (479)
Q Consensus 326 l~~~~i~~iEdP~~~~D~~g~~~L~~--~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~ 401 (479)
.+++++..+.+ +.+|-+ .. +-|+..... ..+-+..+++.+. +++ .=||.- -++.++.
T Consensus 43 ~~~~~~~~~~~---------~~~ll~~~~~D~V~I~tp~~~--h~~~~~~~l~~g~-~v~------~EKP~~-~~~~~~~ 103 (120)
T PF01408_consen 43 AEKYGIPVYTD---------LEELLADEDVDAVIIATPPSS--HAEIAKKALEAGK-HVL------VEKPLA-LTLEEAE 103 (120)
T ss_dssp HHHTTSEEESS---------HHHHHHHTTESEEEEESSGGG--HHHHHHHHHHTTS-EEE------EESSSS-SSHHHHH
T ss_pred HHHhcccchhH---------HHHHHHhhcCCEEEEecCCcc--hHHHHHHHHHcCC-EEE------EEcCCc-CCHHHHH
Confidence 45677664444 444444 23 444444432 2566777777765 777 666654 4799999
Q ss_pred HHHHHHhhCCCeEEEec
Q 011677 402 EVVKLANDVPWGVVISH 418 (479)
Q Consensus 402 ~i~~~A~~~g~~~~v~h 418 (479)
++.++|+++|..++++|
T Consensus 104 ~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 104 ELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHHTSCEEEE-
T ss_pred HHHHHHHHhCCEEEEeC
Confidence 99999999999999986
No 151
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=35.87 E-value=1.9e+02 Score=30.04 Aligned_cols=110 Identities=11% Similarity=0.133 Sum_probs=63.1
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee-cccC-CCCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF-FSRY-PSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v-~~~~-~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
.|+..++|++.+ .|++.-+. .++++.+++++.+ +|.| .|.. ..+++ +..+...-+..+++..++++++..
T Consensus 224 ~w~~i~~ir~~~~~pviiKgV--~~~eda~~a~~~G-~d~I~VSnhGGrqld----~~~~~~~~L~ei~~~~~~~vi~dG 296 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVKGI--VTAEDAKRCIELG-ADGVILSNHGGRQLD----DAIAPIEALAEIVAATYKPVLIDS 296 (361)
T ss_pred CHHHHHHHHHhCCCCEEEecC--CCHHHHHHHHHCC-cCEEEECCCCcCCCc----CCccHHHHHHHHHHHhCCeEEEeC
Confidence 577889999999 88776664 3599999999876 6665 1211 11221 112223333344555678887765
Q ss_pred CCCCCchhHHHHhHhhcCCCCcccCCC-------CchhHHHHhHHHHHHH
Q 011677 419 RSGETEDSFIADLSVGLASGQIKAGAP-------CRGERLAKYNQLLHIE 461 (479)
Q Consensus 419 ~~get~d~~~~dlAv~~~~~~ik~G~~-------~~~er~~kyn~ll~ie 461 (479)
...... . +-=|+++|+..+-.|.| .+.+.+.++=++|+-|
T Consensus 297 GIr~g~-D--v~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 297 GIRRGS-D--IVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred CCCCHH-H--HHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 432221 1 12255556666655543 3556676666665543
No 152
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=35.43 E-value=2.3e+02 Score=29.35 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=42.3
Q ss_pred CCCHHH-HHHHHHHHHhhCCceeeecCCCc----cC-HHHH-HHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 312 FKSGED-MIEMYKELCADYPIVSIEDPFDK----ED-WEHT-KSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 312 ~~t~~e-~i~~~~~ll~~~~i~~iEdP~~~----~D-~~g~-~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
..+.+| ++++. +++++.++.+|+=--.. .. ...+ +++++.+ +||++--.+ +++..++.++.+.+|.|
T Consensus 244 G~~~~e~~~~~~-~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~--~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 244 GPNEEADALYLI-EQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAY--TAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCHHHHHHHHH-HHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCC--CHHHHHHHHHcCCCCEE
Confidence 457788 67664 56777777777522110 00 1223 5666666 776543333 49999999999999998
No 153
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.19 E-value=89 Score=32.02 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeec--------C---CCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIED--------P---FDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAM 379 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEd--------P---~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d 379 (479)
.++.+|++++. +.+++.++.||+= | .+..+++--+++++.+ +||++--.. ++++.++++++.+.+|
T Consensus 223 G~~~~e~~~i~-~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i-~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 223 GLTVQDYVQYA-KWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLI-TSGAQAEEILQNNRAD 300 (337)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCC-CCHHHHHHHHHcCCCC
Confidence 45788998765 5577877777641 1 1122345456777777 886543323 4599999999999999
Q ss_pred ee
Q 011677 380 LF 381 (479)
Q Consensus 380 ~v 381 (479)
.|
T Consensus 301 ~V 302 (337)
T PRK13523 301 LI 302 (337)
T ss_pred hH
Confidence 98
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.62 E-value=79 Score=34.12 Aligned_cols=111 Identities=7% Similarity=0.102 Sum_probs=63.1
Q ss_pred CceeeecCC--CccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceec-ccCCCCcCccc------cccHH
Q 011677 330 PIVSIEDPF--DKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFF-SRYPSNLWINQ------IGTVT 398 (479)
Q Consensus 330 ~i~~iEdP~--~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~-~~~~~~ik~~~------~Ggit 398 (479)
.+.-+..+- ...-++..++|+++. +||+..+. .+.++.+.+++.+ +|+|. .-.|..+...+ ...++
T Consensus 242 dvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v--~t~e~a~~l~~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~~ 318 (486)
T PRK05567 242 DVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV--ATAEAARALIEAG-ADAVKVGIGPGSICTTRIVAGVGVPQIT 318 (486)
T ss_pred CEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc--CCHHHHHHHHHcC-CCEEEECCCCCccccceeecCCCcCHHH
Confidence 355555431 122334566677766 78665553 3489999988776 67771 00011111111 23466
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCC
Q 011677 399 EAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446 (479)
Q Consensus 399 ea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~ 446 (479)
-..++++.++..+++++.........| +--|+++||..+-.|...
T Consensus 319 ~~~~~~~~~~~~~~~viadGGi~~~~d---i~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 319 AIADAAEAAKKYGIPVIADGGIRYSGD---IAKALAAGASAVMLGSML 363 (486)
T ss_pred HHHHHHHHhccCCCeEEEcCCCCCHHH---HHHHHHhCCCEEEECccc
Confidence 677777778888999877444322222 334556688888888763
No 155
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.55 E-value=4.5e+02 Score=28.34 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhhCCce--eeecCCCccCHHHHHHHHhhh-------h----hhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIV--SIEDPFDKEDWEHTKSVLQIC-------Q----QVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~--~iEdP~~~~D~~g~~~L~~~~-------~----~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
..+++..++.+..+.+++++. ++.|.-.--+.+-+.+|.+.+ + ..-.|.. ..+.+.++.+-+.+ +
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d~ell~~l~~aG-~ 298 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRDADILHLYRRAG-L 298 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCCHHHHHHHHHhC-C
Confidence 347888888887777777744 445543223444455555443 1 1112332 12344444433333 4
Q ss_pred ceec----ccCCCCcC-ccccccHHHHHHHHHHHhhCCCeEEEe---cCCCCCchhH--HHHhHhhcCCCCcc
Q 011677 379 MLFF----SRYPSNLW-INQIGTVTEAIEVVKLANDVPWGVVIS---HRSGETEDSF--IADLSVGLASGQIK 441 (479)
Q Consensus 379 d~v~----~~~~~~ik-~~~~Ggitea~~i~~~A~~~g~~~~v~---h~~get~d~~--~~dlAv~~~~~~ik 441 (479)
+.|+ |..+..++ .+|..+..+..++++.++++|+.+.+. +..+||.+++ ..+++..++..++.
T Consensus 299 ~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~ 371 (497)
T TIGR02026 299 VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN 371 (497)
T ss_pred cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE
Confidence 5442 22233333 356678889999999999999965422 2357776653 45666666666544
No 156
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=34.11 E-value=1e+02 Score=32.31 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=60.9
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc-------ccccHHHHHHHHHHHhhCCC
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN-------QIGTVTEAIEVVKLANDVPW 412 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~-------~~Ggitea~~i~~~A~~~g~ 412 (479)
-+|+..++|++.+ .||+.-+. .+.++.+.+++.+ +|+| .+.-+ -..++.-..++.+... ..+
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV--~~~~dA~~a~~~G-~d~I------~vsnhGGr~~d~~~~t~~~L~ei~~~~~-~~~ 309 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGI--LHPDDARRAVEAG-VDGV------VVSNHGGRQVDGSIAALDALPEIVEAVG-DRL 309 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecC--CCHHHHHHHHHCC-CCEE------EEcCCCCcCCCCCcCHHHHHHHHHHHhc-CCC
Confidence 4788999999998 99888775 4599999998876 7777 54421 1123333333333222 248
Q ss_pred eEEEecCCCCCchhHHHHhHhhcCCCCcccCCC-------CchhHHHHhHHHHH
Q 011677 413 GVVISHRSGETEDSFIADLSVGLASGQIKAGAP-------CRGERLAKYNQLLH 459 (479)
Q Consensus 413 ~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~-------~~~er~~kyn~ll~ 459 (479)
++++....... .+.+- |+++|+..+-.|-| .+.+.+.++=++|+
T Consensus 310 ~vi~dGGIr~G-~Dv~K--ALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~ 360 (383)
T cd03332 310 TVLFDSGVRTG-ADIMK--ALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLL 360 (383)
T ss_pred eEEEeCCcCcH-HHHHH--HHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHH
Confidence 88776643222 22222 44455666555543 24455555555544
No 157
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=34.11 E-value=1.2e+02 Score=31.46 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=59.5
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc---ccccHHHHHHHHH-HHhh--CCCe
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN---QIGTVTEAIEVVK-LAND--VPWG 413 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~---~~Ggitea~~i~~-~A~~--~g~~ 413 (479)
-+|+..++|++.. +||+--+.. ++++++++++.+ +|.| .+.-. |..+.-.++.... ++++ ..++
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV~--~~~dA~~a~~~G-vd~I------~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~ 281 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGVL--TGEDARIAIQAG-AAGI------IVSNHGARQLDYVPATISALEEVVKATQGRIP 281 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecCC--CHHHHHHHHHcC-CCEE------EECCCCCCCCCCchhHHHHHHHHHHHhCCCCe
Confidence 4788899999999 999988863 499999998887 5655 33221 1111112222222 3333 3477
Q ss_pred EEEecCCCCCchhHHHHhHhhcCCCCcccCCCC-------chhHHHHhHHHHH
Q 011677 414 VVISHRSGETEDSFIADLSVGLASGQIKAGAPC-------RGERLAKYNQLLH 459 (479)
Q Consensus 414 ~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~-------~~er~~kyn~ll~ 459 (479)
++++..... .-+.+- |+++|+..+-.|.|. +.+.+.++=++|+
T Consensus 282 vi~dGGIr~-G~Dv~K--ALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~ 331 (367)
T PLN02493 282 VFLDGGVRR-GTDVFK--ALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLR 331 (367)
T ss_pred EEEeCCcCc-HHHHHH--HHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777664322 222222 445567666555442 3444545444443
No 158
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.01 E-value=5.2e+02 Score=27.57 Aligned_cols=127 Identities=16% Similarity=0.051 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHhhC---CceeeecCCCccCHHHHHHHHhhh----hhhhcC-CccccCHHHHHHHhcCCCCceec-
Q 011677 312 FKSGEDMIEMYKELCADY---PIVSIEDPFDKEDWEHTKSVLQIC----QQVVGD-DLLMSNPKRIERATLIPLAMLFF- 382 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~---~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gd-e~~~t~~~~~~~~i~~~a~d~v~- 382 (479)
..++++.++.+..+.+.| .-.+|.|...-.+.+-+.+|.+.+ +..... .... +.+.++.+-+. .|+.++
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~-~~e~l~~l~~a-G~~~v~i 303 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANV-DYETLKVMKEN-GLRLLLV 303 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCC-CHHHHHHHHHc-CCCEEEE
Confidence 347888888877766665 335566654444555555555544 221110 0112 35555554444 355552
Q ss_pred ---ccCCCCcCc-cccccHHHHHHHHHHHhhCCCeEEEe---cCCCCCchhHH--HHhHhhcCCCCc
Q 011677 383 ---SRYPSNLWI-NQIGTVTEAIEVVKLANDVPWGVVIS---HRSGETEDSFI--ADLSVGLASGQI 440 (479)
Q Consensus 383 ---~~~~~~ik~-~~~Ggitea~~i~~~A~~~g~~~~v~---h~~get~d~~~--~dlAv~~~~~~i 440 (479)
|..+..++. +|--++....++++.++++|+.+.+. ...+||.+++. .+++..++...+
T Consensus 304 GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~ 370 (472)
T TIGR03471 304 GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTI 370 (472)
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce
Confidence 222223322 34446778999999999999987543 23678866543 444555554433
No 159
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=32.63 E-value=27 Score=34.63 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=44.0
Q ss_pred cccccHHHHHHHHHHHhhCCCeEEEecC--CCC---CchhHHHHhHhhcCCCCcccCCCCc
Q 011677 392 NQIGTVTEAIEVVKLANDVPWGVVISHR--SGE---TEDSFIADLSVGLASGQIKAGAPCR 447 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~~~~v~h~--~ge---t~d~~~~dlAv~~~~~~ik~G~~~~ 447 (479)
+..|.+.++.+++++|+.+|++..+.+. +|. +.-..-+|+-||.|-.-+-.-+|++
T Consensus 167 g~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiG 227 (382)
T COG1103 167 GEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIG 227 (382)
T ss_pred CCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCee
Confidence 5679999999999999999999886552 222 2334568999999998888888875
No 160
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=32.43 E-value=1.5e+02 Score=30.47 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHH-----hhCCceeeecCCCccCHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCCCCceecccC
Q 011677 315 GEDMIEMYKELC-----ADYPIVSIEDPFDKEDWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIPLAMLFFSRY 385 (479)
Q Consensus 315 ~~e~i~~~~~ll-----~~~~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~ 385 (479)
..+.+....+.+ ++-+-+.+-+|-.+..+..|..+.++. ..+--++....+++++++.+..+ ...+
T Consensus 90 ~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-t~lv---- 164 (401)
T PRK10874 90 TTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPR-TRIL---- 164 (401)
T ss_pred HHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcC-cEEE----
Confidence 455555444433 233456667776666667787775544 22222332334588898888544 4555
Q ss_pred CCCcC--ccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 386 PSNLW--INQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 386 ~~~ik--~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
.+. .+..|.+.+..+++++|+++|+.+++-.
T Consensus 165 --~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~ 197 (401)
T PRK10874 165 --ALGQMSNVTGGCPDLARAITLAHQAGMVVMVDG 197 (401)
T ss_pred --EEeCCcccccCcCCHHHHHHHHHHcCCEEEEEC
Confidence 332 2567888899999999999999877533
No 161
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=32.04 E-value=4.8e+02 Score=28.98 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeecC-----------CCccCHHHHHHHHhhh--hhhh----c-----CCcccc--CHH
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIEDP-----------FDKEDWEHTKSVLQIC--QQVV----G-----DDLLMS--NPK 367 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEdP-----------~~~~D~~g~~~L~~~~--~~I~----g-----de~~~t--~~~ 367 (479)
.++.++++... +.+++.++..||== +.+++|+-.+.|++.. +++. | -..+-. ...
T Consensus 17 ~~~t~dkl~ia-~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~ 95 (582)
T TIGR01108 17 RMRTEDMLPIA-EKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVER 95 (582)
T ss_pred cCCHHHHHHHH-HHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHH
Confidence 67889999865 55889999999983 5677888888888754 3221 2 111100 023
Q ss_pred HHHHHhcCCCCceecccCCCCcC--ccccccHHHHHHHHHHHhhCCCeEEEe-cCCC--CCchhHHHHhH---hhcCCCC
Q 011677 368 RIERATLIPLAMLFFSRYPSNLW--INQIGTVTEAIEVVKLANDVPWGVVIS-HRSG--ETEDSFIADLS---VGLASGQ 439 (479)
Q Consensus 368 ~~~~~i~~~a~d~v~~~~~~~ik--~~~~Ggitea~~i~~~A~~~g~~~~v~-h~~g--et~d~~~~dlA---v~~~~~~ 439 (479)
+++.+++.+ +|.+ .+- ++. +..+.+.+++|+++|..+.+. +... -.+..+.++++ ...|+..
T Consensus 96 ~v~~a~~~G-vd~i------rif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 96 FVKKAVENG-MDVF------RIFDALND---PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred HHHHHHHCC-CCEE------EEEEecCc---HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344455443 5665 332 222 367888889999999987643 2111 12345555554 5557777
Q ss_pred cccC
Q 011677 440 IKAG 443 (479)
Q Consensus 440 ik~G 443 (479)
|.+-
T Consensus 166 I~i~ 169 (582)
T TIGR01108 166 ICIK 169 (582)
T ss_pred EEEC
Confidence 7543
No 162
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=31.37 E-value=30 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHhccchhHHHHHHHHHhhhcCCCcHHHHHH
Q 011677 5 EYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISN 37 (479)
Q Consensus 5 ~y~~~~~~~~~~~~~ln~~~~~~p~d~~~~l~~ 37 (479)
+++-.|..+..|-+++|.++..+|.|.+.||.-
T Consensus 39 ~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ylt~ 71 (87)
T PF13797_consen 39 EKKWKKKKPPRLHELVNDILSLKPNDYMNYLTV 71 (87)
T ss_pred HHHhccCCCcCHHHHHHHHHcCCHHHHHHHHHH
Confidence 455668888999999999999999999998843
No 163
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.30 E-value=3.4e+02 Score=26.56 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCCCCceeecccccccccCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCce
Q 011677 253 GGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIV 332 (479)
Q Consensus 253 G~~~~~~~~~~~~l~~v~~ai~~~g~~~~~iiD~aa~~~~~~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~ 332 (479)
|++.+.. +.++.++.|+.|...+.+- +=.+ |+- |+...+-+++++.+.+-++++++.
T Consensus 97 gtL~~~~-s~~e~~~rl~~a~~~v~~~----~Gln----Nhm--------------Gs~~tsn~~aM~~~m~~Lk~r~l~ 153 (250)
T COG2861 97 GTLRPGM-SAEEILRRLRKAMNKVPDA----VGLN----NHM--------------GSRFTSNEDAMEKLMEALKERGLY 153 (250)
T ss_pred CCcccCC-CHHHHHHHHHHHHhhCccc----eeeh----hhh--------------hhhhcCcHHHHHHHHHHHHHCCeE
Confidence 4555543 4578899999998754322 1111 111 111223367777777778999999
Q ss_pred eeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhCC
Q 011677 333 SIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVP 411 (479)
Q Consensus 333 ~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g 411 (479)
||-+-....-..+ ++.+.+ +|..--+.+.-+ +.....| .-...+..++|+++|
T Consensus 154 flDs~T~a~S~a~--~iAk~~gVp~~~rdvfLD~---------e~~~~~V---------------~kql~~~~~~Ark~G 207 (250)
T COG2861 154 FLDSGTIANSLAG--KIAKEIGVPVIKRDVFLDD---------EDTEAAV---------------LKQLDAAEKLARKNG 207 (250)
T ss_pred EEcccccccchhh--hhHhhcCCceeeeeeeecC---------cCCHHHH---------------HHHHHHHHHHHHhcC
Confidence 9987766543222 333344 443222222110 0011112 345667888999999
Q ss_pred CeEEEecCCCCC
Q 011677 412 WGVVISHRSGET 423 (479)
Q Consensus 412 ~~~~v~h~~get 423 (479)
..+-+||-..+|
T Consensus 208 ~ai~IGh~~~~T 219 (250)
T COG2861 208 SAIGIGHPHKNT 219 (250)
T ss_pred ceEEecCCchhH
Confidence 999999976555
No 164
>PLN02656 tyrosine transaminase
Probab=31.25 E-value=1.9e+02 Score=30.09 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=54.6
Q ss_pred HHHHHHHHH-HHhhCCceeeecCCCccCHHHHHHHHh-hh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 316 EDMIEMYKE-LCADYPIVSIEDPFDKEDWEHTKSVLQ-IC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 316 ~e~i~~~~~-ll~~~~i~~iEdP~~~~D~~g~~~L~~-~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
.+++..... ++++-+-+.+++|..+ .+....++.. ++ +|+.-++-+.-+++.+++.+..+..-++ ...+
T Consensus 106 ~~al~~~~~~l~~~gd~Vlv~~p~y~-~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~------l~~P 178 (409)
T PLN02656 106 TQAIDVALSMLARPGANILLPRPGFP-IYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALV------IINP 178 (409)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCC-cHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEE------EECC
Confidence 455544433 3444457899999764 2233333322 12 4543233233457888887766544455 3333
Q ss_pred c-ccccH---HHHHHHHHHHhhCCCeEEE
Q 011677 392 N-QIGTV---TEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 392 ~-~~Ggi---tea~~i~~~A~~~g~~~~v 416 (479)
+ -.|.+ .+..+++++|+++|+.+++
T Consensus 179 ~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 179 GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3 35544 5889999999999988764
No 165
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.15 E-value=86 Score=31.85 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhCCceee-------ecCCC-ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 317 DMIEMYKELCADYPIVSI-------EDPFD-KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~i-------EdP~~-~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
+.+++ .+.+++.++.+| ++... ..||+..+++++.+ +||+|.-- +++++++++.++...+|.|
T Consensus 150 ~~~~~-a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg-I~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 150 NCVEI-AQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD-ITDPLKARAVLDYTGADAL 221 (321)
T ss_pred hHHHH-HHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC-CCCHHHHHHHHhccCCCEE
Confidence 44544 344677887777 33332 35788888998888 88665443 3469999999987778988
No 166
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.09 E-value=3.2e+02 Score=27.93 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCCCce----eec--cc-c-ccccc-CceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh-CCceee-
Q 011677 266 LDLVKEAINRTGIPSSKW----SDC--KS-S-MHNIY-STKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD-YPIVSI- 334 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i----iD~--aa-~-~~~~~-~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~-~~i~~i- 334 (479)
.+.+++++.+.|.+...+ +|. .. . +|+.- ..+|.+ -||+.+ -.|++|++.. .++..+ ++..||
T Consensus 96 ~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~---lpNTag--~~ta~eAv~~-a~lare~~~~~~iK 169 (326)
T PRK11840 96 FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTY---LPNTAG--CYTAEEAVRT-LRLAREAGGWDLVK 169 (326)
T ss_pred HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEE---CccCCC--CCCHHHHHHH-HHHHHHhcCCCeEE
Confidence 345667777777552222 553 12 2 55422 234444 355543 6799999965 566666 457777
Q ss_pred -----ecCCCccCHHHHHHHHhh-----h-h-hhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc---cHHH
Q 011677 335 -----EDPFDKEDWEHTKSVLQI-----C-Q-QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG---TVTE 399 (479)
Q Consensus 335 -----EdP~~~~D~~g~~~L~~~-----~-~-~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G---gite 399 (479)
|++..-.|....-+-.+. + + |.|.|+. ...+++.+.+ |-+| .+-..-+| |++.
T Consensus 170 lEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~-----~~a~~l~~~g-~~av------mPl~~pIGsg~gv~~ 237 (326)
T PRK11840 170 LEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDP-----IAAKRLEDAG-AVAV------MPLGAPIGSGLGIQN 237 (326)
T ss_pred EEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHHHHHhcC-CEEE------eeccccccCCCCCCC
Confidence 455554555443332222 2 4 7888874 4455555555 4666 55444444 2443
Q ss_pred HHHHHHHHhhCCCeEEEecCCCCCchhH-HHHh---HhhcCCCCcccCCCC
Q 011677 400 AIEVVKLANDVPWGVVISHRSGETEDSF-IADL---SVGLASGQIKAGAPC 446 (479)
Q Consensus 400 a~~i~~~A~~~g~~~~v~h~~get~d~~-~~dl---Av~~~~~~ik~G~~~ 446 (479)
--.+-.+.+...++++++...+-.+|.. ...| +|.+.....|..+|.
T Consensus 238 p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv 288 (326)
T PRK11840 238 PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPV 288 (326)
T ss_pred HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHH
Confidence 3333444555789999988776655531 1222 122233445666664
No 167
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=30.71 E-value=2.2e+02 Score=29.64 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=61.7
Q ss_pred ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc----cccccHHHHHHHHHHHhhC--CC
Q 011677 340 KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI----NQIGTVTEAIEVVKLANDV--PW 412 (479)
Q Consensus 340 ~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~----~~~Ggitea~~i~~~A~~~--g~ 412 (479)
.-+|+..++|++.+ +||+--+. .++++++.+.+.+ +|.| .+.. ..-++.+.+.-+..++++. .+
T Consensus 214 ~~~w~~i~~l~~~~~~PvivKGv--~~~eda~~a~~~G-vd~I------~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVKGP--QCPEDADRALKAG-ASGI------WVTNHGGRQLDGGPAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCC--CCHHHHHHHHHcC-cCEE------EECCcCccCCCCCCcHHHHHHHHHHHhCCCC
Confidence 45788899999988 99776664 3488888888776 5644 2211 0112233223333344434 38
Q ss_pred eEEEecCCCCCchhHHHHhHhhcCCCCcccCCC-------CchhHHHHhHHHHH
Q 011677 413 GVVISHRSGETEDSFIADLSVGLASGQIKAGAP-------CRGERLAKYNQLLH 459 (479)
Q Consensus 413 ~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~-------~~~er~~kyn~ll~ 459 (479)
+++++...-... +++ =|+++|+..+-.|-| .+.+.+.++=+.|+
T Consensus 285 ~vi~dGGIr~g~-Dv~--KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~ 335 (367)
T TIGR02708 285 PIVFDSGVRRGQ-HVF--KALASGADLVALGRPVIYGLALGGSQGARQVFEYLN 335 (367)
T ss_pred cEEeeCCcCCHH-HHH--HHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHH
Confidence 887766432222 222 245578888877766 34555555544443
No 168
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=30.67 E-value=3.6e+02 Score=28.52 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh-h----hhhcCCccccCHHHHHHHhcCCC--Cce
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC-Q----QVVGDDLLMSNPKRIERATLIPL--AML 380 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~-~----~I~gde~~~t~~~~~~~~i~~~a--~d~ 380 (479)
..+|.+|=+++. +.|++.++.+||=-++ +.|++..+.+.... . .+.+-.. ....+++.++..+. +.+
T Consensus 19 ~~~s~e~Ki~Ia-~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ea~~~a~~~~i~i 95 (409)
T COG0119 19 VSFSVEEKIRIA-KALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALAR--AIKRDIEALLEAGVDRIHI 95 (409)
T ss_pred CcCCHHHHHHHH-HHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHH--hHHhhHHHHHhCCCCEEEE
Confidence 467999999875 5589999999998776 56777777776432 2 1222221 11335666655442 222
Q ss_pred ecccC----CCCcCccccccHHHHHHHHHHHhhCCCeEEEec-CCCCCchhHHHHh---HhhcCCCCcccCCCCchhHHH
Q 011677 381 FFSRY----PSNLWINQIGTVTEAIEVVKLANDVPWGVVISH-RSGETEDSFIADL---SVGLASGQIKAGAPCRGERLA 452 (479)
Q Consensus 381 v~~~~----~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h-~~get~d~~~~dl---Av~~~~~~ik~G~~~~~er~~ 452 (479)
+.+-+ -+.++-++.--+.-+.+.+++|+.+|+.+..+. ....|+-.+++.+ +...|+..+.+++-.+.---.
T Consensus 96 f~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~ 175 (409)
T COG0119 96 FIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPN 175 (409)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHH
Confidence 22222 223444555566666777789999998876322 2234555555554 344457777666554443333
Q ss_pred HhHHH
Q 011677 453 KYNQL 457 (479)
Q Consensus 453 kyn~l 457 (479)
.|-++
T Consensus 176 ~~~~~ 180 (409)
T COG0119 176 EVADI 180 (409)
T ss_pred HHHHH
Confidence 34443
No 169
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=30.46 E-value=1.7e+02 Score=28.52 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCce----eeccc----c-cccccC-ceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhh-CCceee
Q 011677 266 LDLVKEAINRTGIPSSKW----SDCKS----S-MHNIYS-TKYDLDFKSPNKSGQNFKSGEDMIEMYKELCAD-YPIVSI 334 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i----iD~aa----~-~~~~~~-g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~-~~i~~i 334 (479)
.+.+++++++.|-+...+ ++... . +++.-+ .+|.+- ||+. .-.|++|++.. .++..+ ++..||
T Consensus 21 ~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lL---PNTa--Gc~tA~EAv~~-A~laRe~~~t~wI 94 (247)
T PF05690_consen 21 PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLL---PNTA--GCRTAEEAVRT-ARLAREAFGTNWI 94 (247)
T ss_dssp HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEE---EE-T--T-SSHHHHHHH-HHHHHHTTS-SEE
T ss_pred HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEEC---CcCC--CCCCHHHHHHH-HHHHHHHcCCCeE
Confidence 345667787777542122 44433 2 444222 233332 3433 36799999965 566666 457776
Q ss_pred e-----cCC--CccCHH---HHHHHHhhh---hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc---HH
Q 011677 335 E-----DPF--DKEDWE---HTKSVLQIC---QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT---VT 398 (479)
Q Consensus 335 E-----dP~--~~~D~~---g~~~L~~~~---~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg---it 398 (479)
- ||- -||-++ .-+.|.+.- .|-+.||.. -.+++.+.+ |.+| ++--+-+|+ |.
T Consensus 95 KLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v-----~akrL~d~G-caav------MPlgsPIGSg~Gi~ 162 (247)
T PF05690_consen 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV-----LAKRLEDAG-CAAV------MPLGSPIGSGRGIQ 162 (247)
T ss_dssp EE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HH-----HHHHHHHTT--SEB------EEBSSSTTT---SS
T ss_pred EEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHH-----HHHHHHHCC-CCEE------EecccccccCcCCC
Confidence 4 332 233333 333343333 677777753 344555554 7777 777766664 43
Q ss_pred HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCC
Q 011677 399 EAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ 439 (479)
Q Consensus 399 ea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ 439 (479)
.-..+--+.++.++++++....|-.+|. -.|+-+|+.-
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSda---a~AMElG~da 200 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDA---AQAMELGADA 200 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHH---HHHHHTT-SE
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHH---HHHHHcCCce
Confidence 3333444566779999998777665443 2344445543
No 170
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=30.29 E-value=92 Score=28.56 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=40.7
Q ss_pred hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcccccc-HHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhH
Q 011677 354 QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGT-VTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLS 432 (479)
Q Consensus 354 ~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Gg-itea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlA 432 (479)
+|++|+|.. .+-++......-+-++ .+--+-.|| |||+.+.. -+++|++++.=.|.|...| .+||-
T Consensus 121 iPlVGEE~l---aEAVkAV~rLpRv~iL------VLAGslMGGkIteaVk~l--r~~hgI~VISL~M~GSVpd--VADlV 187 (218)
T COG1707 121 IPLVGEEEL---AEAVKAVARLPRVGIL------VLAGSLMGGKITEAVKEL--REEHGIPVISLNMFGSVPD--VADLV 187 (218)
T ss_pred ccccChHHH---HHHHHHHhccccceeE------EEecccccchHHHHHHHH--HHhcCCeEEEeccCCCCcc--hhhee
Confidence 899999964 3444444445555555 554454444 78887654 4788999754445554322 35654
Q ss_pred hh
Q 011677 433 VG 434 (479)
Q Consensus 433 v~ 434 (479)
|+
T Consensus 188 vt 189 (218)
T COG1707 188 VT 189 (218)
T ss_pred ec
Confidence 43
No 171
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.29 E-value=4e+02 Score=26.14 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhh-CCceeee-----cCC--CccCHHHHHHHHhh----h--hhhhcCCccccCHHHHH
Q 011677 305 PNKSGQNFKSGEDMIEMYKELCAD-YPIVSIE-----DPF--DKEDWEHTKSVLQI----C--QQVVGDDLLMSNPKRIE 370 (479)
Q Consensus 305 ~~~~~~~~~t~~e~i~~~~~ll~~-~~i~~iE-----dP~--~~~D~~g~~~L~~~----~--~~I~gde~~~t~~~~~~ 370 (479)
||+.+ -.|++|++.. .++..+ ++..||- ||= -+|-.+-.+.-+.- + +|.|.|+. ...+
T Consensus 67 pNTaG--~~ta~eAv~~-a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~-----~~ak 138 (250)
T PRK00208 67 PNTAG--CRTAEEAVRT-ARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDP-----VLAK 138 (250)
T ss_pred CCCCC--CCCHHHHHHH-HHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHH
Confidence 55433 6699999975 566655 4566653 331 23333333333322 2 77888885 3344
Q ss_pred HHhcCCCCceecccCCCCc--Cc--cccccHHHHHHHHHHHhhCCCeEEEecCCCCCch
Q 011677 371 RATLIPLAMLFFSRYPSNL--WI--NQIGTVTEAIEVVKLANDVPWGVVISHRSGETED 425 (479)
Q Consensus 371 ~~i~~~a~d~v~~~~~~~i--k~--~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d 425 (479)
++.+. .|++| .+ .+ +.. |++.---+..+.+..++++++..+.+..+|
T Consensus 139 ~l~~~-G~~~v------mPlg~pIGsg~-gi~~~~~i~~i~e~~~vpVIveaGI~tped 189 (250)
T PRK00208 139 RLEEA-GCAAV------MPLGAPIGSGL-GLLNPYNLRIIIEQADVPVIVDAGIGTPSD 189 (250)
T ss_pred HHHHc-CCCEe------CCCCcCCCCCC-CCCCHHHHHHHHHhcCCeEEEeCCCCCHHH
Confidence 44444 58888 66 22 112 343322233344446899998877655544
No 172
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=29.28 E-value=1.1e+02 Score=32.34 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhh--CCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 315 GEDMIEMYKELCAD--YPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 315 ~~e~i~~~~~ll~~--~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
..|++-+..+ +.+ -+-.++=+-+++.-.+-.+.-.+-+ +.|.-++. ....+++...+.+.+-++ .=-|
T Consensus 149 aAEAm~ma~r-~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~--~d~~~l~~~~~~~~~gv~------vQyP 219 (450)
T COG0403 149 AAEAMLMAKR-VTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDA--DDLDDLESADDGDVFGVL------VQYP 219 (450)
T ss_pred HHHHHHHHHH-hhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEecc--chhhhhhhccccCeEEEE------EecC
Confidence 4677755444 454 3566777777776666666555554 44443332 134444444112334444 5557
Q ss_pred cccc-cHHHHHHHHHHHhhCCCeEEEecCCC-----CCchhHHHHhHhhcCCCC---cccCCCC
Q 011677 392 NQIG-TVTEAIEVVKLANDVPWGVVISHRSG-----ETEDSFIADLSVGLASGQ---IKAGAPC 446 (479)
Q Consensus 392 ~~~G-gitea~~i~~~A~~~g~~~~v~h~~g-----et~d~~~~dlAv~~~~~~---ik~G~~~ 446 (479)
+-.| .+.+..++...++++|..++++...- ...-.+-+|++||.+-.| +..|+|-
T Consensus 220 ~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh 283 (450)
T COG0403 220 NTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH 283 (450)
T ss_pred CCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc
Confidence 7788 67779999999999999888877531 123346689999986655 3566664
No 173
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.02 E-value=2e+02 Score=29.64 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=53.4
Q ss_pred CCceeeecCCCccCHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC--ccccccHHHHHH
Q 011677 329 YPIVSIEDPFDKEDWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW--INQIGTVTEAIE 402 (479)
Q Consensus 329 ~~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik--~~~~Ggitea~~ 402 (479)
-+-+.+.+|-.+..+..|..+.++. +.+--|+....+++.+++.+..+ ...+ .+. .+..|.+.+..+
T Consensus 106 gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv------~i~~~~n~tG~~~~~~~ 178 (398)
T TIGR03392 106 GDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPR-TRIL------ALGQMSNVTGGCPDLAR 178 (398)
T ss_pred CCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccC-ceEE------EEECccccccccCCHHH
Confidence 3466777887666667777765544 12212332223578888887654 4555 332 256788889999
Q ss_pred HHHHHhhCCCeEEE
Q 011677 403 VVKLANDVPWGVVI 416 (479)
Q Consensus 403 i~~~A~~~g~~~~v 416 (479)
++++|+++|+.+++
T Consensus 179 i~~~~~~~~~~~iv 192 (398)
T TIGR03392 179 AITLAHQYGAVVVV 192 (398)
T ss_pred HHHHHHHcCCEEEE
Confidence 99999999998765
No 174
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=28.44 E-value=2.2e+02 Score=28.89 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=69.9
Q ss_pred eeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCCceeeec----CCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHH
Q 011677 297 KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIED----PFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIER 371 (479)
Q Consensus 297 ~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~i~~iEd----P~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~ 371 (479)
.+++.+.+|.-+ .-..+++++.+.+++++..++-|== -++++.+..|.++.++. ..++-|-+ -+-+.+
T Consensus 101 ~Tein~~Gp~is---~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S----g~~L~~ 173 (310)
T COG1105 101 ETEINFPGPEIS---EAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS----GEALLA 173 (310)
T ss_pred EEEecCCCCCCC---HHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC----hHHHHH
Confidence 577765444211 1123456667777777888766655 56677878887777777 77777743 566778
Q ss_pred HhcCCCCceecccCCCCcCccc----------cccHHHHHHHHHHHhhCCCeEEE
Q 011677 372 ATLIPLAMLFFSRYPSNLWINQ----------IGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 372 ~i~~~a~d~v~~~~~~~ik~~~----------~Ggitea~~i~~~A~~~g~~~~v 416 (479)
+++.+ .. .||||. ..+..+.++.++.....|++.++
T Consensus 174 ~L~~~---P~------lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~Vi 219 (310)
T COG1105 174 ALEAK---PW------LIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVI 219 (310)
T ss_pred HHccC---Cc------EEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEE
Confidence 87765 55 888885 55666888888877778887664
No 175
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=28.07 E-value=2.8e+02 Score=28.33 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=56.4
Q ss_pred HHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++......+ ++-+-+.+++|....-...++.+..++ +|+-.++-+.-+++.+++.+..+ +.++.-..|.|+ .+
T Consensus 101 ~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~-~~~v~i~~P~NP-tG 178 (383)
T TIGR03540 101 KEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK-AKLMFINYPNNP-TG 178 (383)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc-ceEEEEeCCCCC-cC
Confidence 45555544443 444589999998655444444444344 45422222323577787766543 555521123333 23
Q ss_pred ccccHHHHHHHHHHHhhCCCeEEE
Q 011677 393 QIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 ~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+=+..+..+++++|+++++.+++
T Consensus 179 ~~~~~~~~~~i~~~a~~~~~~ii~ 202 (383)
T TIGR03540 179 AVAPLKFFKELVEFAKEYNIIVCH 202 (383)
T ss_pred ccCCHHHHHHHHHHHHHcCEEEEE
Confidence 334456689999999999987664
No 176
>PLN02535 glycolate oxidase
Probab=27.67 E-value=1.9e+02 Score=30.12 Aligned_cols=93 Identities=9% Similarity=0.084 Sum_probs=52.5
Q ss_pred cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc---cc-ccHHHHHHHHHHHhh--CCCe
Q 011677 341 EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN---QI-GTVTEAIEVVKLAND--VPWG 413 (479)
Q Consensus 341 ~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~---~~-Ggitea~~i~~~A~~--~g~~ 413 (479)
-+|+..++|++.. .||+.-+. .++++.+.+++.+ +|.| .+.-. +. ++++...-+.++.++ ..++
T Consensus 210 ~tW~~i~~lr~~~~~PvivKgV--~~~~dA~~a~~~G-vD~I------~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ip 280 (364)
T PLN02535 210 LSWKDIEWLRSITNLPILIKGV--LTREDAIKAVEVG-VAGI------IVSNHGARQLDYSPATISVLEEVVQAVGGRVP 280 (364)
T ss_pred CCHHHHHHHHhccCCCEEEecC--CCHHHHHHHHhcC-CCEE------EEeCCCcCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 4788899999988 99888885 3589998888766 6766 33210 11 123222223333333 2588
Q ss_pred EEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 414 VVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 414 ~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
+++..... +....+- |+++|+..+-.|.|
T Consensus 281 Vi~dGGIr-~g~Dv~K--ALalGA~aV~vGr~ 309 (364)
T PLN02535 281 VLLDGGVR-RGTDVFK--ALALGAQAVLVGRP 309 (364)
T ss_pred EEeeCCCC-CHHHHHH--HHHcCCCEEEECHH
Confidence 76655432 2222223 44445655555544
No 177
>PRK06348 aspartate aminotransferase; Provisional
Probab=27.64 E-value=2.5e+02 Score=28.77 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=55.5
Q ss_pred HHHHHHHHHH-HhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKEL-CADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~l-l~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++...... +.+-+-+++++|....=...++.+..+. +|+..++-+.-+++.+++.+..+ ..++.=..|.|+ .+
T Consensus 99 ~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NP-tG 176 (384)
T PRK06348 99 CHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSK-TKAIILNSPNNP-TG 176 (384)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcC-ccEEEEeCCCCC-CC
Confidence 4454444333 4444578999998755444444433333 44433333334578888877544 344411123332 22
Q ss_pred ccccHHHHHHHHHHHhhCCCeEEE
Q 011677 393 QIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 ~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+-+..+..+++++|+++++.+++
T Consensus 177 ~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 177 AVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEE
Confidence 333455889999999999987654
No 178
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.24 E-value=4.1e+02 Score=24.54 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhhhhh--hcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQV--VGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I--~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
+.+++.+.... +-+.++.+||=.+...+...+-+..++..++ .|.-... +.+++..+++.+ +|++ ..
T Consensus 22 ~~~~~~~~~~~-~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl-~~d~~~~A~~~g-Adgv------~~-- 90 (187)
T PRK07455 22 DLELGLQMAEA-VAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTIL-TLEDLEEAIAAG-AQFC------FT-- 90 (187)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEE-cHHHHHHHHHcC-CCEE------EC--
Confidence 56777776555 4467899999988766655444443333222 3433333 468888888776 4555 11
Q ss_pred cccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCccc
Q 011677 392 NQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
.+.+ .+....++.+++..++|+.+ .. =+.-|...|+.++|+
T Consensus 91 p~~~-----~~~~~~~~~~~~~~i~G~~t---~~--e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 91 PHVD-----PELIEAAVAQDIPIIPGALT---PT--EIVTAWQAGASCVKV 131 (187)
T ss_pred CCCC-----HHHHHHHHHcCCCEEcCcCC---HH--HHHHHHHCCCCEEEE
Confidence 1111 34555677777777676321 11 123334457777765
No 179
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=27.13 E-value=4e+02 Score=27.25 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCccccc
Q 011677 317 DMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIG 395 (479)
Q Consensus 317 e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~~~G 395 (479)
+++.....++..-+-+.+.+|....-+.-|....++. +.+.--+. .+++.+++.+..+ ..+|+--+|.|+ .|
T Consensus 78 ~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~--~d~~~l~~~i~~~-tklv~le~P~NP----~~ 150 (366)
T PRK08247 78 AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT--ASLKAIEQAITPN-TKAIFIETPTNP----LM 150 (366)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC--CCHHHHHHhcccC-ceEEEEECCCCC----CC
Confidence 3444444555554567788887766555565544444 22221121 3578888887653 566622234443 68
Q ss_pred cHHHHHHHHHHHhhCCCeEEEecCCCCC----chhHHHHhHhhcCCCCcc
Q 011677 396 TVTEAIEVVKLANDVPWGVVISHRSGET----EDSFIADLSVGLASGQIK 441 (479)
Q Consensus 396 gitea~~i~~~A~~~g~~~~v~h~~get----~d~~~~dlAv~~~~~~ik 441 (479)
.+.+..+++++|+++|..+++--..... ....-+|+.+....+++-
T Consensus 151 ~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~ 200 (366)
T PRK08247 151 QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLG 200 (366)
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceecc
Confidence 8999999999999999987764332110 011235676666666664
No 180
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=27.04 E-value=2.3e+02 Score=29.69 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=30.4
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
+|+..++|++.. .|++.-+. .+.++++.+++.+ +|+|
T Consensus 233 tW~di~~lr~~~~~pvivKgV--~s~~dA~~a~~~G-vd~I 270 (381)
T PRK11197 233 SWKDLEWIRDFWDGPMVIKGI--LDPEDARDAVRFG-ADGI 270 (381)
T ss_pred CHHHHHHHHHhCCCCEEEEec--CCHHHHHHHHhCC-CCEE
Confidence 678899999999 99888885 3599999998876 6666
No 181
>PRK06855 aminotransferase; Validated
Probab=26.79 E-value=4.8e+02 Score=27.37 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCC-CCceecccCCCCcC
Q 011677 316 EDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIP-LAMLFFSRYPSNLW 390 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~-a~d~v~~~~~~~ik 390 (479)
.+++.....+++.-+.+.+|+|.-+. +.....+.... +|+-.++-+.-+++.+++.+... ....++=..|.|+
T Consensus 106 ~~al~~~~~l~~~Gd~Vlv~~P~Y~~-~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NP- 183 (433)
T PRK06855 106 GDAIAKIYGLLRREARVIGPSPAYST-HSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNP- 183 (433)
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCch-HHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCC-
Confidence 45554444455555589999998765 33332222222 34322232333588888887532 2333311123333
Q ss_pred ccccccHHHHHHHHHHHhhCCCeEE
Q 011677 391 INQIGTVTEAIEVVKLANDVPWGVV 415 (479)
Q Consensus 391 ~~~~Ggitea~~i~~~A~~~g~~~~ 415 (479)
.+.+-+..+..+++++|+++++.++
T Consensus 184 TG~~~s~~~~~~l~~~a~~~~~~II 208 (433)
T PRK06855 184 TGAVYPKEILREIVDIAREYDLFII 208 (433)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 2345567788899999999999865
No 182
>PRK07337 aminotransferase; Validated
Probab=26.57 E-value=3e+02 Score=28.17 Aligned_cols=96 Identities=11% Similarity=-0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHH-HHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc-
Q 011677 316 EDMIEMYKE-LCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI- 391 (479)
Q Consensus 316 ~e~i~~~~~-ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~- 391 (479)
.+++..... ++++-+-+++++|-...-...++.+..++ +|+-.++.+.-+++++++.+..+..-++ ...+
T Consensus 100 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~------l~~p~ 173 (388)
T PRK07337 100 SAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVL------LASPS 173 (388)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEE------EECCC
Confidence 445544433 34444588999998776554444433333 5542222233458888887765543344 2222
Q ss_pred ccccc---HHHHHHHHHHHhhCCCeEEEe
Q 011677 392 NQIGT---VTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 392 ~~~Gg---itea~~i~~~A~~~g~~~~v~ 417 (479)
|-.|. ..+..+++++|+++|+.+++-
T Consensus 174 NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 174 NPTGTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred CCCCcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 33444 557888999999999876543
No 183
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=26.48 E-value=2.8e+02 Score=28.77 Aligned_cols=95 Identities=8% Similarity=-0.039 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++......+ ++-+-+++++|....=....+.+..++ +|+-.++.+.-++..+++.+..+ ...++ ...++
T Consensus 114 ~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~-~~~i~-----~~~p~ 187 (412)
T PTZ00433 114 SHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR-TKALI-----MTNPS 187 (412)
T ss_pred HHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccC-ceEEE-----EeCCC
Confidence 55665544433 334578999997544222222222222 44433322333578887776554 44441 22332
Q ss_pred c-cc---cHHHHHHHHHHHhhCCCeEEE
Q 011677 393 Q-IG---TVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 ~-~G---gitea~~i~~~A~~~g~~~~v 416 (479)
. .| +..+..+++++|+++|+.+++
T Consensus 188 NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 188 NPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 2 44 356788999999999988764
No 184
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.24 E-value=3.3e+02 Score=21.56 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCH-HHHHHHHhhh--hh--hhcCCccccCHHHHHHHhcCCCCceecccCCCC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDW-EHTKSVLQIC--QQ--VVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~-~g~~~L~~~~--~~--I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ 388 (479)
+..++.+.+.+ ..+.+..++--++..+. +-.++|++.. +| +++++. +.....++++.++.++ .
T Consensus 31 ~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~---~~~~~~~~~~~g~~~~-------l 98 (112)
T PF00072_consen 31 SGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDED---DSDEVQEALRAGADDY-------L 98 (112)
T ss_dssp SHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESST---SHHHHHHHHHTTESEE-------E
T ss_pred CHHHHHHHhcc--cCceEEEEEeeeccccccccccccccccccccEEEecCCC---CHHHHHHHHHCCCCEE-------E
Confidence 56777766533 34679998877765443 5557776655 44 345543 3666777777665554 4
Q ss_pred cCccccccHHHH
Q 011677 389 LWINQIGTVTEA 400 (479)
Q Consensus 389 ik~~~~Ggitea 400 (479)
.|+....-+.++
T Consensus 99 ~kp~~~~~l~~~ 110 (112)
T PF00072_consen 99 SKPFSPEELRAA 110 (112)
T ss_dssp ESSSSHHHHHHH
T ss_pred ECCCCHHHHHHh
Confidence 666554444333
No 185
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=25.96 E-value=3.2e+02 Score=28.42 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=53.9
Q ss_pred HHHHHHHHHH-HhhCCceeeecCCCccCHHHHHHHHhh-h--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 316 EDMIEMYKEL-CADYPIVSIEDPFDKEDWEHTKSVLQI-C--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 316 ~e~i~~~~~l-l~~~~i~~iEdP~~~~D~~g~~~L~~~-~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
.+++..+.+. +++-+-+++++|.-+. +....++... + +++..++-+.-+++.+++.+..+..-+++ ..|.|+ .
T Consensus 107 ~~al~~~~~~l~~~gd~v~v~~P~y~~-~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~-~nP~NP-T 183 (409)
T PLN00143 107 KHAAEIIIKVLARPEANILLPRPGFPD-VETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVI-INPGNP-C 183 (409)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCCcC-HHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEE-ECCCCC-C
Confidence 5566555443 3444588999998533 3333333222 2 44322232334688888877655444440 112221 1
Q ss_pred cccccHHHHHHHHHHHhhCCCeEEE
Q 011677 392 NQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
+.+=+..+..+++++|+++++.+++
T Consensus 184 G~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 184 GSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEEE
Confidence 2233456788999999999987654
No 186
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.55 E-value=1e+02 Score=31.43 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceec-ccCCCCcCccc----cc----cHHHHHHHHHHHhhCCCeE
Q 011677 346 TKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFF-SRYPSNLWINQ----IG----TVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 346 ~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~-~~~~~~ik~~~----~G----gitea~~i~~~A~~~g~~~ 414 (479)
.++++++. +||+..+. .+++..+.+++.+ +|++. +..++.....+ .| +++...++ ++...+++
T Consensus 131 I~~ir~~~p~~~vi~g~V--~t~e~a~~l~~aG-ad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~---~~~~~ipV 204 (326)
T PRK05458 131 IQHIKKHLPETFVIAGNV--GTPEAVRELENAG-ADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWC---AKAARKPI 204 (326)
T ss_pred HHHHHhhCCCCeEEEEec--CCHHHHHHHHHcC-cCEEEECCCCCcccccccccCCCCCccHHHHHHHH---HHHcCCCE
Confidence 44455555 66676664 3588888887765 67761 11111111110 11 34444444 34456887
Q ss_pred EEecCCCCCchhHHHHhHhhcCCCCcccCCCC
Q 011677 415 VISHRSGETEDSFIADLSVGLASGQIKAGAPC 446 (479)
Q Consensus 415 ~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~ 446 (479)
+......... .. -=|+++|+..+-.|.+.
T Consensus 205 IAdGGI~~~~-Di--~KaLa~GA~aV~vG~~~ 233 (326)
T PRK05458 205 IADGGIRTHG-DI--AKSIRFGATMVMIGSLF 233 (326)
T ss_pred EEeCCCCCHH-HH--HHHHHhCCCEEEechhh
Confidence 6554432222 22 23444567676666554
No 187
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=25.46 E-value=2e+02 Score=29.54 Aligned_cols=97 Identities=8% Similarity=0.094 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHhhCCceee-ecCCCccCHHHHHHHHhh-h-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSI-EDPFDKEDWEHTKSVLQI-C-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~i-EdP~~~~D~~g~~~L~~~-~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ 388 (479)
.+++.+++..|.+ .-.--|.-+ |..+-..+++.++++++. + +||.--|.. -+++++.+.-..+ +|+| +
T Consensus 138 ~~dp~~iA~~Ye~-~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFI-ID~yQI~eAr~~G-ADAV------L 208 (338)
T PLN02460 138 NFDPVEIAQAYEK-GGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFI-VDAWQIYYARSKG-ADAI------L 208 (338)
T ss_pred CCCHHHHHHHHHh-CCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeecccc-CCHHHHHHHHHcC-CCcH------H
Confidence 3577777766643 111124444 556778899999999998 7 998888854 4688888875554 7888 6
Q ss_pred cCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 389 LWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 389 ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
+=..-.+ -.+..+..++|+..|+.+.|--
T Consensus 209 LIaaiL~-~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 209 LIAAVLP-DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHhCC-HHHHHHHHHHHHHcCCeEEEEe
Confidence 5444333 3357788888999999988743
No 188
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.27 E-value=6.8e+02 Score=24.81 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeec--C-CCccCHHHHHHHHhhh-h-h-hhcCCc--cccCHHHHHHHhcCCC--Cce
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIED--P-FDKEDWEHTKSVLQIC-Q-Q-VVGDDL--LMSNPKRIERATLIPL--AML 380 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEd--P-~~~~D~~g~~~L~~~~-~-~-I~gde~--~~t~~~~~~~~i~~~a--~d~ 380 (479)
..++.+|-+++...|+++.++..||= | ..++|++.-.++.+.. + . +.+-+. .+.+..+++.+.+.+. .++
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~i~i 93 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKVLNL 93 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCEEEE
Confidence 36789999988766668899999998 5 5677776666665432 1 0 001111 1224556666555432 333
Q ss_pred ecccCC----CCcCccccccHHHHHHHHHHHhhCCCeEEEecC-CC---CCchhHHHHh---HhhcCCCCcccCC
Q 011677 381 FFSRYP----SNLWINQIGTVTEAIEVVKLANDVPWGVVISHR-SG---ETEDSFIADL---SVGLASGQIKAGA 444 (479)
Q Consensus 381 v~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~-~g---et~d~~~~dl---Av~~~~~~ik~G~ 444 (479)
+.+-++ .+++-+.-..+....+++++|++.|+.+.++-. .+ .++..++.++ +...|+..+.+.+
T Consensus 94 ~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~D 168 (280)
T cd07945 94 LTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPD 168 (280)
T ss_pred EEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 321111 122233445566667888999999998776543 11 3344555554 4555777775433
No 189
>PRK06290 aspartate aminotransferase; Provisional
Probab=24.66 E-value=4.2e+02 Score=27.67 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc
Q 011677 315 GEDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI 391 (479)
Q Consensus 315 ~~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~ 391 (479)
+.+++......+ +.-+-+.+++|..+.=....+....++ +|+-.++.+.-+++.+...+..+ +.+|.-..|.|+ .
T Consensus 115 s~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~-~k~i~l~nP~NP-T 192 (410)
T PRK06290 115 SKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK-AKLLYLNYPNNP-T 192 (410)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc-ceEEEEECCCCC-C
Confidence 356665544433 444589999997543222222222223 55433333434577777766543 556521123333 2
Q ss_pred cccccHHHHHHHHHHHhhCCCeEEE
Q 011677 392 NQIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 392 ~~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
+.+=+..+..+++++|+++|+-+++
T Consensus 193 G~v~s~e~l~~l~~la~~~~~~iI~ 217 (410)
T PRK06290 193 GAVATKEFYEEVVDFAKENNIIVVQ 217 (410)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 3344566678899999999987653
No 190
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=24.44 E-value=69 Score=23.02 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHhhhcCCCcHHHHHHHhhhcC
Q 011677 18 DAVNAAVRAKSPDPVLFISNHMRKAV 43 (479)
Q Consensus 18 ~~ln~~~~~~p~d~~~~l~~~~~~~~ 43 (479)
|++...| ++-.|.++.+|+||+.-.
T Consensus 22 d~F~~~L-~~s~D~F~vIaeyfGrGv 46 (49)
T PF12451_consen 22 DLFFKQL-EESEDRFSVIAEYFGRGV 46 (49)
T ss_pred HHHHHHH-HhCCCCchhHHHHHcccc
Confidence 3444444 889999999999998743
No 191
>PRK07550 hypothetical protein; Provisional
Probab=24.31 E-value=3.5e+02 Score=27.61 Aligned_cols=95 Identities=12% Similarity=-0.050 Sum_probs=52.1
Q ss_pred HHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHhhhhhhhcCC--ccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDD--LLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~~~~~I~gde--~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++......+ .+-+-+.+|+|....=...++....+++++-.|+ -..-+++.+++.++.+..-++ ...++
T Consensus 100 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~------~~~P~ 173 (386)
T PRK07550 100 NQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIA------LVTPN 173 (386)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEE------EeCCC
Confidence 34444444433 4445789999976443333332222223333332 222357888888766533333 22232
Q ss_pred -cccc---HHHHHHHHHHHhhCCCeEEE
Q 011677 393 -QIGT---VTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 -~~Gg---itea~~i~~~A~~~g~~~~v 416 (479)
-.|. ..+..+++++|+++|+.+++
T Consensus 174 NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 174 NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 3343 34688999999999988764
No 192
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=24.21 E-value=2.6e+02 Score=28.04 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHh--hCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCC-----CCceecccCC
Q 011677 316 EDMIEMYKELCA--DYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIP-----LAMLFFSRYP 386 (479)
Q Consensus 316 ~e~i~~~~~ll~--~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~-----a~d~v~~~~~ 386 (479)
.+++..+..++. +...+++++|..+.-....+.+...+ +|+--++....++..+.+.+++. ...++.--.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p 157 (363)
T PF00155_consen 78 QAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNP 157 (363)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESS
T ss_pred ccchhhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccc
Confidence 455555555553 55689999998876655555554444 44332233345688899988773 2344411111
Q ss_pred CCcCccccccHHHHHHHHHHHhhCCCeEEEec
Q 011677 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 387 ~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h 418 (479)
.++ .+.+=...+..+++++|+++|+.+++--
T Consensus 158 ~nP-tG~~~~~~~l~~l~~~~~~~~~~ii~De 188 (363)
T PF00155_consen 158 NNP-TGSVLSLEELRELAELAREYNIIIIVDE 188 (363)
T ss_dssp BTT-TTBB--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccc-cccccccccccchhhhhcccccceeeee
Confidence 121 1223356788889999999999887643
No 193
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.01 E-value=3.5e+02 Score=28.00 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 345 HTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 345 g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
--+++++.+ +||++--.. ++++...++++.+.+|.|
T Consensus 280 ~~~~ik~~~~~pvi~~G~i-~~~~~~~~~l~~g~~D~V 316 (370)
T cd02929 280 YIKFVKQVTSKPVVGVGRF-TSPDKMVEVVKSGILDLI 316 (370)
T ss_pred HHHHHHHHCCCCEEEeCCC-CCHHHHHHHHHcCCCCee
Confidence 335677777 886643222 469999999999999998
No 194
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=24.00 E-value=4.3e+02 Score=28.78 Aligned_cols=131 Identities=14% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh----------hh-hhcCCccccCHHHHHHHhcCC
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC----------QQ-VVGDDLLMSNPKRIERATLIP 376 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~----------~~-I~gde~~~t~~~~~~~~i~~~ 376 (479)
..+|.+|-+++. +.|++.++..||=-++ ++|++..+.+.+.. .+ |++ +.....++++..++..
T Consensus 101 v~fs~eeKi~Ia-~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a--~~R~~~~dId~a~~a~ 177 (503)
T PLN03228 101 GSLTPPQKLEIA-RQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICG--IARCKKRDIEAAWEAL 177 (503)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEee--ecccCHhhHHHHHHhh
Confidence 467999999875 5689999999999776 55666666665431 01 110 0011244566655431
Q ss_pred ------CCceecccCC----CCcCccccccHHHHHHHHHHHhhCCCe-EEEec-CCCCCchhHHHHhH---hhcCCCCcc
Q 011677 377 ------LAMLFFSRYP----SNLWINQIGTVTEAIEVVKLANDVPWG-VVISH-RSGETEDSFIADLS---VGLASGQIK 441 (479)
Q Consensus 377 ------a~d~v~~~~~----~~ik~~~~Ggitea~~i~~~A~~~g~~-~~v~h-~~get~d~~~~dlA---v~~~~~~ik 441 (479)
.+.++.+-++ .+++.++-.-+..+.+++++|+++|.. +.+++ ..+.++..++.+++ ...|+..+.
T Consensus 178 ~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~ 257 (503)
T PLN03228 178 KYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVG 257 (503)
T ss_pred cccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEE
Confidence 1222211111 123333444466667788899999985 66666 34446666666655 344676665
Q ss_pred cCC
Q 011677 442 AGA 444 (479)
Q Consensus 442 ~G~ 444 (479)
+.+
T Consensus 258 l~D 260 (503)
T PLN03228 258 IAD 260 (503)
T ss_pred Eec
Confidence 433
No 195
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=23.99 E-value=1.3e+02 Score=29.65 Aligned_cols=89 Identities=12% Similarity=0.027 Sum_probs=57.1
Q ss_pred HHHHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCc----cccCHHHHHHHhcC-CCCceecccCCCCc-Ccccc
Q 011677 323 KELCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDL----LMSNPKRIERATLI-PLAMLFFSRYPSNL-WINQI 394 (479)
Q Consensus 323 ~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~----~~t~~~~~~~~i~~-~a~d~v~~~~~~~i-k~~~~ 394 (479)
..++.+-+.+.+..|.+..-+.++....... ++.--++. ..-+++.+++.+.+ ..+..+ .+ .++-.
T Consensus 93 ~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v------~l~~p~~~ 166 (294)
T cd00615 93 LAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAA------VITNPTYY 166 (294)
T ss_pred HHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEE------EEECCCCC
Confidence 4455666688888888776666665432222 32211221 01258899988864 335544 33 24567
Q ss_pred ccHHHHHHHHHHHhhCCCeEEEe
Q 011677 395 GTVTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 395 Ggitea~~i~~~A~~~g~~~~v~ 417 (479)
|.+.+..+++++|+++|+.+++-
T Consensus 167 G~~~dl~~I~~~~~~~g~~livD 189 (294)
T cd00615 167 GICYNLRKIVEEAHHRGLPVLVD 189 (294)
T ss_pred CEecCHHHHHHHHHhcCCeEEEE
Confidence 89899999999999999998764
No 196
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.86 E-value=1.6e+02 Score=31.58 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhhCCceee-ecCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSI-EDPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~i-EdP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
.+++.++++.|.. -.-.|.-+ |..+-..+++.++.+++.+ +||.--|.. .++.++.+.-..+ +|+| ++
T Consensus 69 ~~d~~~~a~~y~~--gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFi-id~~QI~ea~~~G-ADav------LL 138 (454)
T PRK09427 69 DFDPAEIARVYKH--YASAISVLTDEKYFQGSFDFLPIVRAIVTQPILCKDFI-IDPYQIYLARYYG-ADAI------LL 138 (454)
T ss_pred CCCHHHHHHHHHc--CCeEEEEecCcCcCCCCHHHHHHHHHhCCCCEEecccc-CCHHHHHHHHHcC-CCch------hH
Confidence 3467777776622 12235444 4556788999999999999 999988854 5688888876555 6877 65
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
=..-.+ -.+..+..++|++.|+.+.+-..
T Consensus 139 I~~~L~-~~~l~~l~~~a~~lGl~~lvEvh 167 (454)
T PRK09427 139 MLSVLD-DEQYRQLAAVAHSLNMGVLTEVS 167 (454)
T ss_pred HHHhCC-HHHHHHHHHHHHHcCCcEEEEEC
Confidence 444333 23577788999999999987543
No 197
>PLN02389 biotin synthase
Probab=23.60 E-value=6.2e+02 Score=26.36 Aligned_cols=115 Identities=11% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhhCCceee---e---cCCCcc-CHHHHHHHHhhh----hhhhcCCccccCHHHHHHHhcCCCCce
Q 011677 312 FKSGEDMIEMYKELCADYPIVSI---E---DPFDKE-DWEHTKSVLQIC----QQVVGDDLLMSNPKRIERATLIPLAML 380 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~i---E---dP~~~~-D~~g~~~L~~~~----~~I~gde~~~t~~~~~~~~i~~~a~d~ 380 (479)
.++++|+++...+ ..+.++.-| . .+..++ +++-+.++-+.+ +.|+.---. .+.+.++++-+.+ +|.
T Consensus 115 ~Ls~EeIl~~a~~-~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-l~~E~l~~LkeAG-ld~ 191 (379)
T PLN02389 115 LMSKDDVLEAAKR-AKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-LEKEQAAQLKEAG-LTA 191 (379)
T ss_pred cCCHHHHHHHHHH-HHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-CCHHHHHHHHHcC-CCE
Confidence 4689999987655 445553322 1 233321 344443333333 333311111 2467777765554 443
Q ss_pred ec---ccCC-CCcCccccccHHHHHHHHHHHhhCCCeEE----EecCCCCCchhHHHHh
Q 011677 381 FF---SRYP-SNLWINQIGTVTEAIEVVKLANDVPWGVV----ISHRSGETEDSFIADL 431 (479)
Q Consensus 381 v~---~~~~-~~ik~~~~Ggitea~~i~~~A~~~g~~~~----v~h~~get~d~~~~dl 431 (479)
+- .-.+ .-.++....+..+.++.++.|++.|+.+. +|| +||....+.++
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl--gEt~edrv~~l 248 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL--GEAEEDRVGLL 248 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC--CCCHHHHHHHH
Confidence 31 0000 01112234689999999999999999863 344 78765544443
No 198
>PRK05481 lipoyl synthase; Provisional
Probab=23.47 E-value=2.4e+02 Score=28.18 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=53.6
Q ss_pred ccccHHHHHHHHHHHhhC--CCe----EEEecCCCCCchhHHHHhHhhcCCCCcccCC-----C-------CchhHHHHh
Q 011677 393 QIGTVTEAIEVVKLANDV--PWG----VVISHRSGETEDSFIADLSVGLASGQIKAGA-----P-------CRGERLAKY 454 (479)
Q Consensus 393 ~~Ggitea~~i~~~A~~~--g~~----~~v~h~~get~d~~~~dlAv~~~~~~ik~G~-----~-------~~~er~~ky 454 (479)
+-.+..+.+++++.|++. |+. +|+|| |||..++..++-.--..++-..+. | ....+-..+
T Consensus 175 r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf--GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~ 252 (289)
T PRK05481 175 PGADYERSLELLKRAKELHPGIPTKSGLMVGL--GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEF 252 (289)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC--CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHH
Confidence 445889999999999998 765 45676 899888777766544332221111 2 224455677
Q ss_pred HHHHHHHHHhCCCccccCcc
Q 011677 455 NQLLHIEEELGDHAIYAGED 474 (479)
Q Consensus 455 n~ll~ie~~l~~~~~~~~~~ 474 (479)
++|..+..++|=..+++|+-
T Consensus 253 ~~l~~~~~~i~~~~~~~~~~ 272 (289)
T PRK05481 253 DEYKEIALELGFLHVASGPL 272 (289)
T ss_pred HHHHHHHHHcCchheEecCc
Confidence 88888999998666666653
No 199
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.39 E-value=2.5e+02 Score=26.65 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhhCC--ceeeec---CCCccCHHHHHHHHhhh-hhhh-cCCccccCHHHHHHHhcCCCCcee
Q 011677 313 KSGEDMIEMYKELCADYP--IVSIED---PFDKEDWEHTKSVLQIC-QQVV-GDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 313 ~t~~e~i~~~~~ll~~~~--i~~iEd---P~~~~D~~g~~~L~~~~-~~I~-gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
.+++++.. |....+.++ +.++|+ ...+-+.+-.+++++.+ +|++ |.-. +++++++++++.+ +|.+
T Consensus 131 ~~~e~~~~-~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGI--rs~e~a~~l~~~G-AD~V 202 (205)
T TIGR01769 131 NKPEIAAA-YCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGI--RSPEIAYEIVLAG-ADAI 202 (205)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCC--CCHHHHHHHHHcC-CCEE
Confidence 35666664 566667665 888999 55556788899999988 7744 5553 5699999987766 6766
No 200
>PRK05764 aspartate aminotransferase; Provisional
Probab=22.63 E-value=3.3e+02 Score=27.80 Aligned_cols=96 Identities=13% Similarity=-0.057 Sum_probs=50.8
Q ss_pred HHHHHHHHH-HHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKE-LCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~-ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++..... ++++-+-+++++|....=....+....++ +|.-.++.+.-+++.+++.+..+ ...+. ...++
T Consensus 101 ~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~-----~~~p~ 174 (393)
T PRK05764 101 KQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPK-TKALI-----LNSPS 174 (393)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCcc-ceEEE-----EECCC
Confidence 344433333 34444578999997543212222222222 44322332333578888877543 34430 22222
Q ss_pred -cccc---HHHHHHHHHHHhhCCCeEEEe
Q 011677 393 -QIGT---VTEAIEVVKLANDVPWGVVIS 417 (479)
Q Consensus 393 -~~Gg---itea~~i~~~A~~~g~~~~v~ 417 (479)
-.|. ..+..+++++|+++|+.+++-
T Consensus 175 NPtG~~~~~~~~~~l~~~a~~~~~~ii~D 203 (393)
T PRK05764 175 NPTGAVYSPEELEAIADVAVEHDIWVLSD 203 (393)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCcEEEEe
Confidence 2344 357889999999999887664
No 201
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.75 E-value=7.1e+02 Score=24.33 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhh-CCceeee-------cCCCccCHHHHHHHHhh----h--hhhhcCCccccCHHHHHHHhcCCC
Q 011677 312 FKSGEDMIEMYKELCAD-YPIVSIE-------DPFDKEDWEHTKSVLQI----C--QQVVGDDLLMSNPKRIERATLIPL 377 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~-~~i~~iE-------dP~~~~D~~g~~~L~~~----~--~~I~gde~~~t~~~~~~~~i~~~a 377 (479)
-.|++|++.. .++-.+ ++-.||- +-+-||-++-.+.-..- + .|-+.||... .+++.+. .
T Consensus 79 c~taeEAv~t-ArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~-----arrLee~-G 151 (262)
T COG2022 79 CRTAEEAVRT-ARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVL-----ARRLEEA-G 151 (262)
T ss_pred cCCHHHHHHH-HHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHH-----HHHHHhc-C
Confidence 5699999964 565554 4455652 33555555544433222 2 6777888542 3344433 5
Q ss_pred CceecccCCCCcCcccccc---HHHHHHHHHHHhhCCCeEEEecCCCCCchh
Q 011677 378 AMLFFSRYPSNLWINQIGT---VTEAIEVVKLANDVPWGVVISHRSGETEDS 426 (479)
Q Consensus 378 ~d~v~~~~~~~ik~~~~Gg---itea~~i~~~A~~~g~~~~v~h~~get~d~ 426 (479)
|-+| ++--.-+|+ +..-..+--+.+...++++|-...|-.+|+
T Consensus 152 caav------MPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdA 197 (262)
T COG2022 152 CAAV------MPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDA 197 (262)
T ss_pred ceEe------ccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHH
Confidence 7788 777766663 444334444567779999988777765443
No 202
>PLN02187 rooty/superroot1
Probab=21.55 E-value=3.4e+02 Score=28.95 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHh-hh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 315 GEDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQ-IC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 315 ~~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~-~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
+.+++......+ ++-+-+++++|.-+. +....+... ++ +++.-++.+.-+++.++..+..+..-++ ...
T Consensus 140 ~~~al~~~~~~l~~pGd~Vlv~~P~y~~-y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~------i~n 212 (462)
T PLN02187 140 CNQGIEIVFESLARPNANILLPRPGFPH-YDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMV------VIN 212 (462)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCcc-HHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEE------EeC
Confidence 456666655544 444578999997553 222222211 11 3332222233458888887765543344 333
Q ss_pred c-ccccc---HHHHHHHHHHHhhCCCeEEE
Q 011677 391 I-NQIGT---VTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 391 ~-~~~Gg---itea~~i~~~A~~~g~~~~v 416 (479)
| |-+|. -.+..+++++|+++|+.+++
T Consensus 213 P~NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 213 PNNPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 3 33444 45688999999999987654
No 203
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=21.52 E-value=3.8e+02 Score=27.59 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH-hhCCceeeecCCCccCHHHHHHHHhhh------hhhhcCCccccCHHHHHHHhcCCCCceecccCCCC
Q 011677 316 EDMIEMYKELC-ADYPIVSIEDPFDKEDWEHTKSVLQIC------QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388 (479)
Q Consensus 316 ~e~i~~~~~ll-~~~~i~~iEdP~~~~D~~g~~~L~~~~------~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ 388 (479)
.+++......+ ++-+-+.+++|... .+..+.+.. +++-.++.+.-+++.+++.+..+ +..++ .
T Consensus 105 ~~al~~~~~~l~~~gd~v~i~~P~y~----~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~-----~ 174 (401)
T TIGR01264 105 SHAIEMCIAALANAGQNILVPRPGFP----LYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK-TAALI-----V 174 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCh----hHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC-ceEEE-----E
Confidence 45554444433 33447889999643 333333332 33322222334578888777554 34441 2
Q ss_pred cCc-cccccH---HHHHHHHHHHhhCCCeEEE
Q 011677 389 LWI-NQIGTV---TEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 389 ik~-~~~Ggi---tea~~i~~~A~~~g~~~~v 416 (479)
..+ |-.|.+ .+..+++++|+++|+.+++
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 175 NNPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 223 234443 4788899999999988764
No 204
>PRK14847 hypothetical protein; Provisional
Probab=21.49 E-value=8.1e+02 Score=25.14 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecCCC---ccCHHHHHHHHhhh-h----hhhcCCccccCHHHHHHHhcCCC-----
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDPFD---KEDWEHTKSVLQIC-Q----QVVGDDLLMSNPKRIERATLIPL----- 377 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP~~---~~D~~g~~~L~~~~-~----~I~gde~~~t~~~~~~~~i~~~a----- 377 (479)
..+|.+|=+++ .++|++.++..||=-|| ++|++.-+++.+.- + .|++ +.....+++...++...
T Consensus 49 v~fs~eeKl~I-A~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~--~~r~~~~dId~a~e~~~~~~~~ 125 (333)
T PRK14847 49 EPMDGARKLRL-FEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEA--LTQSRPDLIARTFEALAGSPRA 125 (333)
T ss_pred CCCCHHHHHHH-HHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEE--EecCcHHHHHHHHHHhCCCCCC
Confidence 36799998876 46689999999999875 56666666665431 1 1111 01113566666554422
Q ss_pred -CceecccCCC----CcCccccccHHHHHHHHHHHhhCCC-------eEEEecC-CCCCchhHHHHhHh
Q 011677 378 -AMLFFSRYPS----NLWINQIGTVTEAIEVVKLANDVPW-------GVVISHR-SGETEDSFIADLSV 433 (479)
Q Consensus 378 -~d~v~~~~~~----~ik~~~~Ggitea~~i~~~A~~~g~-------~~~v~h~-~get~d~~~~dlAv 433 (479)
+++.++-++- .++.++---+..+.+.+++|++++. .+.++-- ...|+.+|+..++-
T Consensus 126 ~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~ 194 (333)
T PRK14847 126 IVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCD 194 (333)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHH
Confidence 3333111111 2233334445556677889999954 4444442 22356677776654
No 205
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=21.43 E-value=4.1e+02 Score=27.33 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCC-c-cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcC
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFD-K-EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLW 390 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~-~-~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik 390 (479)
|....+- +..+++++..+..++-=+ . +.-.+..-+.+-. +++..++.-.-++++++..+.. -|++.+..|-.+-
T Consensus 60 T~aN~la-l~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~--~d~~~~~~~~~~~ 136 (342)
T COG2008 60 TQANQLA-LAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP--DDIHHAPTPLAVL 136 (342)
T ss_pred cHHHHHH-HHHhcCCCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC--CCcccCCCceEEE
Confidence 4555553 356788887444444322 2 2333444554444 5655533333359999997765 3333222222222
Q ss_pred c------cccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 391 I------NQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 391 ~------~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
. +++=++.|..+|.++|+++|+++ |+-| +.+.+-+|+++
T Consensus 137 e~~~te~GtVy~l~el~~i~~~~k~~~l~L---HmDG----AR~~nA~valg 181 (342)
T COG2008 137 ENTATEGGTVYPLDELEAISAVCKEHGLPL---HMDG----ARLANALVALG 181 (342)
T ss_pred eeccCCCceecCHHHHHHHHHHHHHhCCce---eech----HHHHHHHHHcC
Confidence 2 23345789999999999999998 7633 56677777765
No 206
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.38 E-value=9.2e+02 Score=26.23 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCceeeecC-----------CCccCHHHHHHHHhhh--hh---------hhcCCcccc--CH
Q 011677 311 NFKSGEDMIEMYKELCADYPIVSIEDP-----------FDKEDWEHTKSVLQIC--QQ---------VVGDDLLMS--NP 366 (479)
Q Consensus 311 ~~~t~~e~i~~~~~ll~~~~i~~iEdP-----------~~~~D~~g~~~L~~~~--~~---------I~gde~~~t--~~ 366 (479)
..++.+|++.. .+.+++.++..||== +.+++|+-.+.+++.. ++ ++|-..+-- ..
T Consensus 22 tr~~t~d~l~i-a~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~ 100 (499)
T PRK12330 22 TRMAMEDMVGA-CEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVD 100 (499)
T ss_pred ccCCHHHHHHH-HHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHH
Confidence 46789999986 466899999999976 5578999999999876 32 222222110 02
Q ss_pred HHHHHHhcCCCCceecccCCCCc--CccccccHHHHHHHHHHHhhCCCeEE--Eec-CCCCCchhHHHHhH---hhcCCC
Q 011677 367 KRIERATLIPLAMLFFSRYPSNL--WINQIGTVTEAIEVVKLANDVPWGVV--ISH-RSGETEDSFIADLS---VGLASG 438 (479)
Q Consensus 367 ~~~~~~i~~~a~d~v~~~~~~~i--k~~~~Ggitea~~i~~~A~~~g~~~~--v~h-~~get~d~~~~dlA---v~~~~~ 438 (479)
.+++...+. ..|++ .| -+|.+ .....+++.+++.|..+. ++- .+.+.+..+.+++| +..|+.
T Consensus 101 ~fv~~a~~~-Gidi~------RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad 170 (499)
T PRK12330 101 RFVEKSAEN-GMDVF------RVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGAD 170 (499)
T ss_pred HHHHHHHHc-CCCEE------EEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 344444444 36665 32 22444 445555556666666542 211 23344555655554 455777
Q ss_pred CcccCCCC
Q 011677 439 QIKAGAPC 446 (479)
Q Consensus 439 ~ik~G~~~ 446 (479)
.|.+.+..
T Consensus 171 ~I~IkDta 178 (499)
T PRK12330 171 SICIKDMA 178 (499)
T ss_pred EEEeCCCc
Confidence 77544433
No 207
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=21.20 E-value=3.2e+02 Score=30.98 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHhhCCceeee-cCCCccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIE-DPFDKEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iE-dP~~~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
..++.+++..|.+. -.--|.-+= ..+-..+++.++.+++.+ +||.--|.. -++.++.+.-..+ +|+| ++
T Consensus 69 ~~d~~~~a~~y~~~-GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFI-id~~QI~ea~~~G-ADav------LL 139 (695)
T PRK13802 69 IPDPAALAREYEQG-GASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFI-VTDYQIWEARAHG-ADLV------LL 139 (695)
T ss_pred CCCHHHHHHHHHHc-CCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEecccc-CCHHHHHHHHHcC-CCEe------eh
Confidence 34677776655431 112255554 446678999999999999 998888854 4688888876555 7888 66
Q ss_pred CccccccHHHHHHHHHHHhhCCCeEEEecC
Q 011677 390 WINQIGTVTEAIEVVKLANDVPWGVVISHR 419 (479)
Q Consensus 390 k~~~~Ggitea~~i~~~A~~~g~~~~v~h~ 419 (479)
=+.-.+ -.+..+..++|++.|+.++|--.
T Consensus 140 I~~~L~-~~~l~~l~~~a~~lGme~LvEvh 168 (695)
T PRK13802 140 IVAALD-DAQLKHLLDLAHELGMTVLVETH 168 (695)
T ss_pred hHhhcC-HHHHHHHHHHHHHcCCeEEEEeC
Confidence 554433 34678888999999999987543
No 208
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.04 E-value=6.6e+02 Score=25.51 Aligned_cols=111 Identities=17% Similarity=0.089 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhhCC---ceee--ecCCCccCH--HHHHHHHhhh--hhhhcC---Cc-------cccCHHHHHHH
Q 011677 312 FKSGEDMIEMYKELCADYP---IVSI--EDPFDKEDW--EHTKSVLQIC--QQVVGD---DL-------LMSNPKRIERA 372 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~---i~~i--EdP~~~~D~--~g~~~L~~~~--~~I~gd---e~-------~~t~~~~~~~~ 372 (479)
.++.+|.++.... +.+++ +.+. ++|....++ +-.+.+++.. +.+++- |. -..+.+.++++
T Consensus 69 ~ls~eeI~e~~~~-~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~L 147 (343)
T TIGR03551 69 LLSLEEIAERAAE-AWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRL 147 (343)
T ss_pred cCCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3588999887654 56666 4444 345332221 3344555442 333221 10 01235666666
Q ss_pred hcCCCCceecccCCCCc------Cccccc-cHHHHHHHHHHHhhCCCeE----EEecCCCCCchh
Q 011677 373 TLIPLAMLFFSRYPSNL------WINQIG-TVTEAIEVVKLANDVPWGV----VISHRSGETEDS 426 (479)
Q Consensus 373 i~~~a~d~v~~~~~~~i------k~~~~G-gitea~~i~~~A~~~g~~~----~v~h~~get~d~ 426 (479)
-+.+ ++.+..-..... +++.-. +..+++++++.|++.|+++ |+|| +||...
T Consensus 148 keAG-l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~--~Et~ed 209 (343)
T TIGR03551 148 KEAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGH--VETPEH 209 (343)
T ss_pred HHhC-cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEec--CCCHHH
Confidence 5555 444410000011 122222 6778999999999999986 3444 466543
No 209
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.99 E-value=1.9e+02 Score=29.00 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=11.5
Q ss_pred hhHHHHhHhhcCCCCcc
Q 011677 425 DSFIADLSVGLASGQIK 441 (479)
Q Consensus 425 d~~~~dlAv~~~~~~ik 441 (479)
|+...|||.|++.+.+-
T Consensus 259 DSGp~HlAaA~~~P~i~ 275 (334)
T TIGR02195 259 DSGLMHVAAALNRPLVA 275 (334)
T ss_pred CCHHHHHHHHcCCCEEE
Confidence 44567777777776663
No 210
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=20.99 E-value=5.2e+02 Score=25.21 Aligned_cols=106 Identities=22% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCCCce-eecccccccc--cCceeeccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC-----ceeee-c
Q 011677 266 LDLVKEAINRTGIPSSKW-SDCKSSMHNI--YSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP-----IVSIE-D 336 (479)
Q Consensus 266 l~~v~~ai~~~g~~~~~i-iD~aa~~~~~--~~g~Y~~~~~~~~~~~~~~~t~~e~i~~~~~ll~~~~-----i~~iE-d 336 (479)
-++|+++.+..|-+..-+ ||+- +++ +.+.|++-..+ +..-|.-+++++-++ +++.+ +.++- |
T Consensus 110 p~lI~~~a~~FGsQciVvaIDak---r~~~g~~~~~~v~~~g-----Gr~~t~~d~~~Wa~~-~e~~GAGEIlLtsmD~D 180 (256)
T COG0107 110 PELITEAADRFGSQCIVVAIDAK---RVPDGENGWYEVFTHG-----GREDTGLDAVEWAKE-VEELGAGEILLTSMDRD 180 (256)
T ss_pred hHHHHHHHHHhCCceEEEEEEee---eccCCCCCcEEEEecC-----CCcCCCcCHHHHHHH-HHHcCCceEEEeeeccc
Confidence 346777777777553233 8882 221 23456664321 112233344443333 55544 22332 2
Q ss_pred CCC-ccCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCcee
Q 011677 337 PFD-KEDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLF 381 (479)
Q Consensus 337 P~~-~~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v 381 (479)
-.. --|++..+.+++.+ +|+.+.-- ..+++++.+++.+..+|++
T Consensus 181 Gtk~GyDl~l~~~v~~~v~iPvIASGG-aG~~ehf~eaf~~~~adAa 226 (256)
T COG0107 181 GTKAGYDLELTRAVREAVNIPVIASGG-AGKPEHFVEAFTEGKADAA 226 (256)
T ss_pred ccccCcCHHHHHHHHHhCCCCEEecCC-CCcHHHHHHHHHhcCccHH
Confidence 232 34889999999999 99665442 3579999999988878876
No 211
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.81 E-value=6.4e+02 Score=26.17 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=56.0
Q ss_pred CHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc-------c--c----ccHHHHHHHHHHH
Q 011677 342 DWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN-------Q--I----GTVTEAIEVVKLA 407 (479)
Q Consensus 342 D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~-------~--~----Ggitea~~i~~~A 407 (479)
|+..+.++.++. +||++.+. .+++..+++++. .+|+| .+-.. + . ..++...++++.+
T Consensus 175 ~~~~i~~~ik~~~ipVIaG~V--~t~e~A~~l~~a-GAD~V------~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~ 245 (368)
T PRK08649 175 EPLNLKEFIYELDVPVIVGGC--VTYTTALHLMRT-GAAGV------LVGIGPGAACTSRGVLGIGVPMATAIADVAAAR 245 (368)
T ss_pred CHHHHHHHHHHCCCCEEEeCC--CCHHHHHHHHHc-CCCEE------EECCCCCcCCCCcccCCCCcCHHHHHHHHHHHH
Confidence 688888888888 99887553 458999999874 58887 44211 1 1 1344445555544
Q ss_pred hhC-------CCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCC
Q 011677 408 NDV-------PWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445 (479)
Q Consensus 408 ~~~-------g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~ 445 (479)
+++ +++++......... .... |+++|+..+..|.+
T Consensus 246 ~~~l~~~~~~~vpVIAdGGI~~~~-diak--AlalGAd~Vm~Gs~ 287 (368)
T PRK08649 246 RDYLDETGGRYVHVIADGGIGTSG-DIAK--AIACGADAVMLGSP 287 (368)
T ss_pred HHhhhhhcCCCCeEEEeCCCCCHH-HHHH--HHHcCCCeecccch
Confidence 443 68887655443222 2222 33457888888875
No 212
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=20.71 E-value=1.2e+02 Score=19.91 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.4
Q ss_pred hHHHHHhccchhHHHHHHHHHhhhcC
Q 011677 3 VQEYLNKHMLSRKIEDAVNAAVRAKS 28 (479)
Q Consensus 3 ~~~y~~~~~~~~~~~~~ln~~~~~~p 28 (479)
++.|++.|..++.|.++|.++...=|
T Consensus 14 i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 14 IEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 67899999999999999999876544
No 213
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.70 E-value=3.2e+02 Score=31.33 Aligned_cols=68 Identities=9% Similarity=-0.027 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhhCCceeeec--------CCC--c--cCHHHHHHHHhhh-hhhhcCCccccCHHHHHHHhcCCCC
Q 011677 312 FKSGEDMIEMYKELCADYPIVSIED--------PFD--K--EDWEHTKSVLQIC-QQVVGDDLLMSNPKRIERATLIPLA 378 (479)
Q Consensus 312 ~~t~~e~i~~~~~ll~~~~i~~iEd--------P~~--~--~D~~g~~~L~~~~-~~I~gde~~~t~~~~~~~~i~~~a~ 378 (479)
.++.++++++. +.+++.++.+|+= +.+ . -...--+++++.+ +||++--.. ++++++++.++++.+
T Consensus 634 g~~~~~~~~~~-~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i-~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 634 GNTPDDAVEIA-RAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAI-SEADHVNSIIAAGRA 711 (765)
T ss_pred CCCHHHHHHHH-HHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHcCCc
Confidence 56888998764 5678888777652 100 0 0112235667766 775543323 458999999999999
Q ss_pred cee
Q 011677 379 MLF 381 (479)
Q Consensus 379 d~v 381 (479)
|.|
T Consensus 712 D~v 714 (765)
T PRK08255 712 DLC 714 (765)
T ss_pred cee
Confidence 998
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.63 E-value=1.2e+02 Score=32.71 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCCceecccCCCCcCccccccHHHHHHHHHHHhhC--CCeEEEe-cCCCCCchhHHHHhHhhcCCCCccc
Q 011677 366 PKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDV--PWGVVIS-HRSGETEDSFIADLSVGLASGQIKA 442 (479)
Q Consensus 366 ~~~~~~~i~~~a~d~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~--g~~~~v~-h~~get~d~~~~dlAv~~~~~~ik~ 442 (479)
.++++.+++.+ +|.| .+|..+ |=-...+++++..++. ++++|+| ..+.|+ +--+...|+..+|.
T Consensus 227 ~~ra~~Lv~aG-Vd~i------~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~-----~~~l~~~G~d~i~v 293 (475)
T TIGR01303 227 GGKAKALLDAG-VDVL------VIDTAH-GHQVKMISAIKAVRALDLGVPIVAGNVVSAEG-----VRDLLEAGANIIKV 293 (475)
T ss_pred HHHHHHHHHhC-CCEE------EEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHH-----HHHHHHhCCCEEEE
Confidence 56777777755 8999 999998 6556667777777776 7888775 222222 23333567888987
Q ss_pred CCCCchhHHHH
Q 011677 443 GAPCRGERLAK 453 (479)
Q Consensus 443 G~~~~~er~~k 453 (479)
|.-.++-++..
T Consensus 294 g~g~Gs~~ttr 304 (475)
T TIGR01303 294 GVGPGAMCTTR 304 (475)
T ss_pred CCcCCccccCc
Confidence 76656555444
No 215
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.61 E-value=5.8e+02 Score=25.86 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhhCCceeeecCCCccCHHHHHHHHhhh-----hhhhcCCccccCHHHHHHHhcC----C-----CCc
Q 011677 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-----QQVVGDDLLMSNPKRIERATLI----P-----LAM 379 (479)
Q Consensus 314 t~~e~i~~~~~ll~~~~i~~iEdP~~~~D~~g~~~L~~~~-----~~I~gde~~~t~~~~~~~~i~~----~-----a~d 379 (479)
-++++++.-.++-+.+++-++-|=+.. ..+.+.++-+.+ +|++-|-. +++-+..+++. + -.|
T Consensus 53 ~Ae~Li~~~~elsd~tg~p~~~~v~~~-~~eam~k~I~~v~~~~d~Pl~IDSt---~p~a~eaaLk~~~e~G~~gR~IiN 128 (308)
T PRK00979 53 KAEALINRQEELSDKTGNPALLDVVGE-SPEAMEKYIDFVSEITDLPFLIDST---SPEARIAAAKYATELGLADRAIYN 128 (308)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecC-hHHHHHHHHHHHHhcCCCCEEEeCC---CHHHHHHHHHHhhhcCCCCceEEE
Confidence 356777776676677887777777653 334454444433 88888853 46655555443 1 234
Q ss_pred eecccCCCCcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHHHHhHH---
Q 011677 380 LFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQ--- 456 (479)
Q Consensus 380 ~v~~~~~~~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~~kyn~--- 456 (479)
.+ +.+..+ +...+++++|+.++|.=. +..+.|+..+|+.-..+
T Consensus 129 SI------n~e~~~--------eel~llk~yg~aavIvLa--------------------~d~~~pt~e~Rl~i~~~~~~ 174 (308)
T PRK00979 129 SI------NPSIEE--------EEIEALKESDIKAAIVLA--------------------FDPMDPSVEGRLKMLEEGGK 174 (308)
T ss_pred ec------cCCCCH--------HHHHHHHHhCCceEEEEE--------------------cCCCCCCHHHHHHHHHhccc
Confidence 44 444332 234678888876433211 22356677788888888
Q ss_pred -----HHHHHHHhC
Q 011677 457 -----LLHIEEELG 465 (479)
Q Consensus 457 -----ll~ie~~l~ 465 (479)
|+++.++.|
T Consensus 175 ~~~~gll~~a~~~G 188 (308)
T PRK00979 175 GQDKGMLPLAEEAG 188 (308)
T ss_pred cchHHHHHHHHHcC
Confidence 788777765
No 216
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=20.58 E-value=48 Score=31.61 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcCCCCcccCCCCchhHH
Q 011677 400 AIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERL 451 (479)
Q Consensus 400 a~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~~~~ik~G~~~~~er~ 451 (479)
..+.+.+.+... ++|+. |+..+|||.|++.+.+-+=++....|+
T Consensus 174 l~e~~ali~~a~--~~I~~------Dtg~~HlA~a~~~p~v~lfg~t~~~~~ 217 (247)
T PF01075_consen 174 LRELAALISRAD--LVIGN------DTGPMHLAAALGTPTVALFGPTNPERW 217 (247)
T ss_dssp HHHHHHHHHTSS--EEEEE------SSHHHHHHHHTT--EEEEESSS-HHHH
T ss_pred HHHHHHHHhcCC--EEEec------CChHHHHHHHHhCCEEEEecCCCHHHh
Confidence 334444444443 44544 667899999999988865444444443
No 217
>PRK07681 aspartate aminotransferase; Provisional
Probab=20.37 E-value=4.9e+02 Score=26.73 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=52.8
Q ss_pred HHHHHHHHH-HHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKE-LCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~-ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++..+.. ++++-+-+.+++|..+.=....+.+-.++ +|+-.++.+.-+++.+.+.+.. .+.++.=..|.|+ .+
T Consensus 103 ~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NP-TG 180 (399)
T PRK07681 103 QDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNP-VP 180 (399)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCC-cC
Confidence 455544443 33444588999997654333333222233 4442222233357777766643 3556611112222 12
Q ss_pred ccccHHHHHHHHHHHhhCCCeEEE
Q 011677 393 QIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 ~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+=+..+..+++++|+++++.++.
T Consensus 181 ~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 181 AMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 233456788999999999987653
No 218
>PRK05957 aspartate aminotransferase; Provisional
Probab=20.31 E-value=3.5e+02 Score=27.78 Aligned_cols=84 Identities=12% Similarity=0.000 Sum_probs=49.8
Q ss_pred HHhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCc-ccccc---HH
Q 011677 325 LCADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWI-NQIGT---VT 398 (479)
Q Consensus 325 ll~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~-~~~Gg---it 398 (479)
++++-+-+.+++|....-...++..-.++ +|+ |+.+.-+++.+++.+..+ +..+. ...+ |-.|. ..
T Consensus 109 ~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~~-~klv~-----~~~p~NPtG~~~~~~ 180 (389)
T PRK05957 109 ITDPGDEIILNTPYYFNHEMAITMAGCQPILVPT--DDNYQLQPEAIEQAITPK-TRAIV-----TISPNNPTGVVYPEA 180 (389)
T ss_pred hcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeec--CCCCCcCHHHHHHhcCcC-ceEEE-----EeCCCCCCCcCcCHH
Confidence 34545578899998755444333322222 443 333334688888887644 44441 2222 33453 44
Q ss_pred HHHHHHHHHhhCCCeEEE
Q 011677 399 EAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 399 ea~~i~~~A~~~g~~~~v 416 (479)
+..+++++|+++|+.+++
T Consensus 181 ~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 181 LLRAVNQICAEHGIYHIS 198 (389)
T ss_pred HHHHHHHHHHHcCcEEEE
Confidence 688999999999998764
No 219
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=20.15 E-value=5.4e+02 Score=26.21 Aligned_cols=99 Identities=17% Similarity=0.056 Sum_probs=53.4
Q ss_pred HHHHHHHHHH-HhhCCceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCcCcc
Q 011677 316 EDMIEMYKEL-CADYPIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWIN 392 (479)
Q Consensus 316 ~e~i~~~~~l-l~~~~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~ik~~ 392 (479)
.+++..+... +++-+-+.+++|....=....+.+..++ +|+-.++-+.-+++.+.+.+..+ +++++--.|.|+ .+
T Consensus 103 ~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~-~~~v~l~~p~NP-tG 180 (385)
T PRK09276 103 KEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK-AKLMFINYPNNP-TG 180 (385)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc-ceEEEEeCCCCC-CC
Confidence 4565554443 3444578999997644322222222233 44422222333577777666543 555621123333 22
Q ss_pred ccccHHHHHHHHHHHhhCCCeEEE
Q 011677 393 QIGTVTEAIEVVKLANDVPWGVVI 416 (479)
Q Consensus 393 ~~Ggitea~~i~~~A~~~g~~~~v 416 (479)
.+=+..+..+++++|+++++.+++
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 181 AVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEE
Confidence 233455678999999999987764
No 220
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.12 E-value=1.1e+02 Score=29.73 Aligned_cols=89 Identities=18% Similarity=0.036 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhCCceeee-cCCC------ccCHHHHHHHHhhh-hhhh-cCCccccCHHHHHHHhcCCCCceecccCC
Q 011677 316 EDMIEMYKELCADYPIVSIE-DPFD------KEDWEHTKSVLQIC-QQVV-GDDLLMSNPKRIERATLIPLAMLFFSRYP 386 (479)
Q Consensus 316 ~e~i~~~~~ll~~~~i~~iE-dP~~------~~D~~g~~~L~~~~-~~I~-gde~~~t~~~~~~~~i~~~a~d~v~~~~~ 386 (479)
.+.+++. +.+++.++..|. ..+. .-|++-.+++++.+ +|++ .+. +++++++.+++..+.+|.+
T Consensus 155 ~~~~~~~-~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG--i~s~~di~~~~~~g~~dgv----- 226 (254)
T TIGR00735 155 LDAVEWA-KEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGG--AGKPEHFYEAFTKGKADAA----- 226 (254)
T ss_pred CCHHHHH-HHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHcCCccee-----
Confidence 3445443 446677755432 1222 23678889999888 7855 333 2469999999988878886
Q ss_pred CCcCcc-ccccHHHHHHHHHHHhhCCCeE
Q 011677 387 SNLWIN-QIGTVTEAIEVVKLANDVPWGV 414 (479)
Q Consensus 387 ~~ik~~-~~Ggitea~~i~~~A~~~g~~~ 414 (479)
.+-.. .-|.+ ...++.+.++++|+++
T Consensus 227 -~~g~a~~~~~~-~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 227 -LAASVFHYREI-TIGEVKEYLAERGIPV 253 (254)
T ss_pred -eEhHHHhCCCC-CHHHHHHHHHHCCCcc
Confidence 43221 12333 2345556677788763
No 221
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=20.09 E-value=5.1e+02 Score=26.05 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=54.2
Q ss_pred HHHHHHHHH-HHhhC---CceeeecCCCccCHHHHHHHHhhh--hhhhcCCccccCHHHHHHHhcCCCCceecccCCCCc
Q 011677 316 EDMIEMYKE-LCADY---PIVSIEDPFDKEDWEHTKSVLQIC--QQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389 (479)
Q Consensus 316 ~e~i~~~~~-ll~~~---~i~~iEdP~~~~D~~g~~~L~~~~--~~I~gde~~~t~~~~~~~~i~~~a~d~v~~~~~~~i 389 (479)
.+++..... ++++- +-+.+|+|-.+.=....+.+..++ +++-.++-+.-+++.++..+..+ ..++. ..
T Consensus 70 ~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~-~~~i~-----i~ 143 (350)
T TIGR03537 70 KEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEE-TKIVW-----IN 143 (350)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhc-cEEEE-----Ee
Confidence 445544433 33332 378999997655444444444444 44322222323578888877554 44441 22
Q ss_pred Cc-cccc---cHHHHHHHHHHHhhCCCeEEEec
Q 011677 390 WI-NQIG---TVTEAIEVVKLANDVPWGVVISH 418 (479)
Q Consensus 390 k~-~~~G---gitea~~i~~~A~~~g~~~~v~h 418 (479)
.+ |-.| ...+..+++++|+++|+.+++-.
T Consensus 144 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De 176 (350)
T TIGR03537 144 YPHNPTGATAPRSYLKETIAMCREHGIILCSDE 176 (350)
T ss_pred CCCCCcCcccCHHHHHHHHHHHHHcCcEEEEec
Confidence 23 3344 34458999999999999876543
No 222
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.02 E-value=94 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=36.5
Q ss_pred CcCccccccHHHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHhHhhcC
Q 011677 388 NLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLA 436 (479)
Q Consensus 388 ~ik~~~~Ggitea~~i~~~A~~~g~~~~v~h~~get~d~~~~dlAv~~~ 436 (479)
.+=+++.|.-.+.+++++.|+++|.+++.=....++.-+..+|..+-..
T Consensus 51 ~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (120)
T cd05710 51 VILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYG 99 (120)
T ss_pred EEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEcc
Confidence 4557899999999999999999999976655555555555666655443
No 223
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.01 E-value=3e+02 Score=27.28 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEecCC-C-CC---------chhHHHHhHhhcCCCCcccCCCCchh
Q 011677 397 VTEAIEVVKLANDVPWGVVISHRS-G-ET---------EDSFIADLSVGLASGQIKAGAPCRGE 449 (479)
Q Consensus 397 itea~~i~~~A~~~g~~~~v~h~~-g-et---------~d~~~~dlAv~~~~~~ik~G~~~~~e 449 (479)
|.++-++.+.|+++|+++++-.-. | .. .....+++|.-+|+.++|..-|..-|
T Consensus 129 i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e 192 (265)
T COG1830 129 IENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPE 192 (265)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChH
Confidence 445556667799999998762211 0 01 11466789999999999976664333
Done!