RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011677
(479 letters)
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 774 bits (2001), Expect = 0.0
Identities = 301/466 (64%), Positives = 360/466 (77%), Gaps = 20/466 (4%)
Query: 20 VNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASV 79
VNAAVRAK+PDPVLFI+NH++KAV + ITK+KARQI+DSRG PTVEVDL T KGMFRA+V
Sbjct: 1 VNAAVRAKTPDPVLFIANHLKKAVMATITKVKARQIIDSRGNPTVEVDLHTSKGMFRAAV 60
Query: 80 PSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDL 139
PSG +G+YEALELRDGDK YLG V +AVKN+NE I+ AL+GMDP Q+QID M++L
Sbjct: 61 PSGASTGIYEALELRDGDKD-YLGKGVLKAVKNVNEIIAPALIGMDPTDQTQIDNFMLEL 119
Query: 140 DKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGK 199
D T KG+LGANAILAVS+A CKAGAAEK VPLYKHIADLAG L LPVPAF VI+GG
Sbjct: 120 DGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFNVINGGS 179
Query: 200 HAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNI 259
HAGN LA+Q+ MILP+GASSF EA+QMGSE YHHLKAVI +KYG CNVG++GG APNI
Sbjct: 180 HAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNI 239
Query: 260 SSIREGLDLVKEAINRTGIPSSKWS---DCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGE 316
+EGL+L+KEAI + G + K D +S KYDLDFK N G N KSG+
Sbjct: 240 QDNKEGLELLKEAIEKAGY-TGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGD 298
Query: 317 DMIEMYKELCADYPIVSIEDPFDKEDWEHTKSV--LQICQQVVGDDLLMSNPKRIERATL 374
++I++YKE +DYPIVSIEDPFD++DWEH + L+ Q+VGDDLL++NPKR+ +A
Sbjct: 299 ELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDV-QIVGDDLLVTNPKRVAKA-- 355
Query: 375 IPLAMLFFSRYPSN---LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADL 431
N L +NQIGTVTE+IE VK++ WGV+ SHRSGETEDSFIADL
Sbjct: 356 -------IQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFIADL 408
Query: 432 SVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
+VGLA+GQIK GAPCR ERLAKYNQLL IEEELGD A+YAGE++R+
Sbjct: 409 AVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGDEAVYAGENFRK 454
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 590 bits (1524), Expect = 0.0
Identities = 224/429 (52%), Positives = 284/429 (66%), Gaps = 35/429 (8%)
Query: 49 KIKARQILDSRGIPTVEVDLFT-HKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVN 107
KIKAR+ILDSRG PTVEV++ T G+ RA+VPSG +G +EA+ELRDGDK YLG V
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 108 RAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAE 167
+AVKN+NE I+ AL+GMD Q ID+ +I+LD T K +LGANAIL VS+A KA AA
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 168 KEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227
+PLY+++ LA LPVP F VI+GG HAGN L Q+ MI+P+GA SF EAL+MG
Sbjct: 121 LGLPLYRYLGGLA---AYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMG 177
Query: 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSKWS-- 284
+E YH LK V+ +K G NVG++GG APN+SS E LDL+ EAI + G P K +
Sbjct: 178 AEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIA 237
Query: 285 -DCKSSMHNIY-STKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
D +S Y KY D + E++I+ YKEL YPIVSIEDPFD++D
Sbjct: 238 LDVAAS--EFYDEGKYVYD-----SDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDD 290
Query: 343 WEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQI 394
WE T + Q+VGDDL ++NP+R+++ I A+L + +NQI
Sbjct: 291 WEGWAKLTAKLGDKI-QIVGDDLFVTNPERLKKG--IEKKAANALL--------IKVNQI 339
Query: 395 GTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKY 454
GT+TE IE +KLA +GVV+SHRSGETED+FIADL+V L +GQIK GAPCR ER AKY
Sbjct: 340 GTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKY 399
Query: 455 NQLLHIEEE 463
NQLL IEEE
Sbjct: 400 NQLLRIEEE 408
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 577 bits (1489), Expect = 0.0
Identities = 255/448 (56%), Positives = 313/448 (69%), Gaps = 28/448 (6%)
Query: 44 PSVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLG 103
S I IKAR+ILDSRG PTVEVDL T KG+FRA+VPSG +G+YEALELRDGDK YLG
Sbjct: 1 MSTIKSIKAREILDSRGNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTEK-----KGELGANAILAVS 157
V +AV+N+NE I+ AL+G D Q ++D+ M++ LD T+ K +LGANAILAVS
Sbjct: 61 KGVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVS 120
Query: 158 IAACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVISGGKHAGNNLAIQDIMILPI 215
+A +A AA K VPLYK++A LAGK LPVP F VI+GGKHAGN LA Q+ MI P+
Sbjct: 121 MAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPV 180
Query: 216 GASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINR 275
GA SF EAL+MG+E YH LK+VI +KYG NVG++GG APNI E LDL+ EAI +
Sbjct: 181 GAPSFKEALRMGAEVYHSLKSVIKKKYGLDATNVGDEGGFAPNIKDPEEALDLLVEAIKK 240
Query: 276 TGIPSSKWS---DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPI 331
G K D +S ++ YDLDFK+PN N +GE+++E+Y +L YPI
Sbjct: 241 AGY-EGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI 299
Query: 332 VSIEDPFDKEDWE-HTKSVLQICQ--QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSN 388
VSIEDPFD++DWE + K I Q Q+VGDDLL++NP RI++A + N
Sbjct: 300 VSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKA---------IEKKACN 350
Query: 389 ---LWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
L +NQIGTVTEAIE KLA WGV++SHRSGETED+FIADL VGL +GQIK GAP
Sbjct: 351 ALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAP 410
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGE 473
CR ERLAKYNQLL IEEELG +A+YAGE
Sbjct: 411 CRSERLAKYNQLLRIEEELGSNAVYAGE 438
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 535 bits (1381), Expect = 0.0
Identities = 212/446 (47%), Positives = 277/446 (62%), Gaps = 48/446 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I I AR+ILDSRG PTVEV++ G F RA+VPSG +G EA+ELRDGDK YLG
Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+N+NE I+ AL+G+D + Q ID+AMI+LD T K +LGANAIL VS+A KA
Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
A +PLY++ L G LPVP +I+GG HA NN+ IQ+ MI+P+GA SF EA
Sbjct: 122 AADSLGLPLYRY---LGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEA 178
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+MG+E +H LK V+ EK VG++GG APN+ S E LDL+ EAI + G P
Sbjct: 179 LRMGAEVFHTLKKVLKEK--GLSTAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGED 236
Query: 283 WS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ DC +S Y KY L+ G+ + E+MI+ EL YPIVSIED
Sbjct: 237 IALALDCAAS--EFYKDGKYVLE-------GEGL-TSEEMIDYLAELVDKYPIVSIEDGL 286
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
D+ DWE T+ + Q+VGDDL ++N KR+++ + LI +
Sbjct: 287 DENDWEGWKLLTEKLGDKV-QLVGDDLFVTNTKRLKKGIEKGAANSILIKV--------- 336
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE ++ ++LA + V+SHRSGETED+ IADL+V +GQIK G+
Sbjct: 337 -----NQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAGQIKTGSLS 391
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAG 472
R ER+AKYNQLL IEEELGD A YAG
Sbjct: 392 RSERIAKYNQLLRIEEELGDAARYAG 417
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 477 bits (1229), Expect = e-167
Identities = 214/446 (47%), Positives = 276/446 (61%), Gaps = 49/446 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKG-MFRASVPSGDPSGMYEALELRDGDKGTYLG 103
S I + AR+ILDSRG PTVEV++ G RA+VPSG +G +EA+ELRDGD YLG
Sbjct: 2 SAIEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDS-RYLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV N+NE I+ AL+G+D Q+ ID +I+LD TE K +LGANAIL VS+A KA
Sbjct: 61 KGVLKAVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKA 120
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
AA +PLY+++ G L LPVP VI+GG HA NNL IQ+ MI+P+GA SF EA
Sbjct: 121 AAASLGIPLYRYLG---GLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEA 177
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ G+E +HHLK ++ EK VG++GG APN+ S E LD++ EAI G P
Sbjct: 178 LRAGAEVFHHLKKLLKEK--GLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGED 235
Query: 283 WS---DCKSSMHNIY-STKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ D +S Y KY L+ +S + E++IE Y EL YPIVSIEDP
Sbjct: 236 IALALDVAAS--EFYKDGKYVLEGES--------LTSEELIEYYLELVKKYPIVSIEDPL 285
Query: 339 DKEDWEH----TKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
++DWE TK + Q +VGDDL ++NPKR+++ A LI
Sbjct: 286 SEDDWEGFAELTKRLGDKVQ-IVGDDLFVTNPKRLKKGIEKGAANAILIKP--------- 335
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE +E + LA D + VISHRSGETED+ IADL+V +GQIK G+
Sbjct: 336 -----NQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLS 390
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAG 472
R ER+AKYN+LL IEEELGD A YAG
Sbjct: 391 RSERVAKYNELLRIEEELGDKARYAG 416
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 460 bits (1186), Expect = e-160
Identities = 206/440 (46%), Positives = 270/440 (61%), Gaps = 36/440 (8%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGNS 105
I I+AR+ILDSRG PTVEV++ G F RA+VPSG +G EALELRDGDK YLG
Sbjct: 1 IVDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60
Query: 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGA 165
V +AV+N+NE I+ L+GMD Q +IDQ +I+LD T K +LGANAIL VS+A KA A
Sbjct: 61 VLKAVENVNEIIAPELIGMDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAA 120
Query: 166 AEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQ 225
+PLY++ L G LPVP +I+GG HA NNL Q+ MI+P+GA SF EAL+
Sbjct: 121 DSLGLPLYRY---LGGFNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAPSFREALR 177
Query: 226 MGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSD 285
MG+E +H LK ++ EK VG++GG APN++S E L+++ EAI + G D
Sbjct: 178 MGAEVFHALKKLLKEKG--LATGVGDEGGFAPNLASNEEALEIIVEAIEKAGY--KPGED 233
Query: 286 CKSSMHNIYSTKYDLDFKSPNKSGQN-FKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE 344
++ S YD + G+N + E+MIE Y+EL YPI+SIED +EDWE
Sbjct: 234 VALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYEELVEKYPIISIEDGLSEEDWE 293
Query: 345 H----TKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYPSNLWIN 392
TK + Q +VGDDL ++N + + + LI N
Sbjct: 294 GWAELTKRLGDKVQ-IVGDDLFVTNTEILREGIEMGVANSILIKP--------------N 338
Query: 393 QIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLA 452
QIGT+TE ++ ++LA + VISHRSGETED+ IADL+V +GQIK G+ R ER+A
Sbjct: 339 QIGTLTETLDAIELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIA 398
Query: 453 KYNQLLHIEEELGDHAIYAG 472
KYNQLL IEEELGD A YAG
Sbjct: 399 KYNQLLRIEEELGDSARYAG 418
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 375 bits (965), Expect = e-129
Identities = 164/300 (54%), Positives = 205/300 (68%), Gaps = 16/300 (5%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
LPVP VI+GG HAGN LA+Q+ MILP GASSF EA++MGSE YH+LK+VI KYG
Sbjct: 2 YVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYGQ 61
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGI-PSSKWS-DCKSS-MHNIYSTKYDLD 301
NVG++GG APNI S +E LDL+ EAI + G K + D SS +N KYDLD
Sbjct: 62 DATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDLD 121
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWE---HTKSVLQICQQVVG 358
FK+P + + + + ++YKEL YPIVSIEDPFD++DWE + L Q+VG
Sbjct: 122 FKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQIVG 181
Query: 359 DDLLMSNPKRIERA--TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVI 416
DDL ++NPKRI +A ++L L +NQIG+VTE++ VK+A D WGV++
Sbjct: 182 DDLTVTNPKRIAKAIEKKACNSLL--------LKVNQIGSVTESLAAVKMAKDAGWGVMV 233
Query: 417 SHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYR 476
SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQLL IEEELG A YAG ++R
Sbjct: 234 SHRSGETEDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRNFR 293
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 205 bits (524), Expect = 5e-65
Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
Query: 46 VITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLGN 104
ITKI AR+ILDSRG PTVEV++ G F RA+VPSG +G +EA+ELRDGDK Y G
Sbjct: 1 TITKIHAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGK 60
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
V +AV+N+NE I+ AL+GMD Q ID+ +I+LD T K +LGANAILAVS+A KA
Sbjct: 61 GVLKAVENVNEIIAPALIGMDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAA 120
Query: 165 AAEKEVPLYKHI 176
AA +PLY+++
Sbjct: 121 AAALGLPLYRYL 132
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 76.0 bits (187), Expect = 4e-15
Identities = 50/153 (32%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGN 104
+VI I R + G +VEVD+ T G R + P + +Y A
Sbjct: 2 TVIENIIGRVAVLRGGKYSVEVDVITDSGFGRFAAPIDENPSLYIA-------------- 47
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+RAV ++E I L+G D Q ID + ++D TE +GAN LAVS+A KA
Sbjct: 48 EAHRAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAA 107
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISG 197
A K +PLY +I G LPVP
Sbjct: 108 ANSKNMPLYSYI---GGTFTTELPVPILEFAED 137
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 46.2 bits (110), Expect = 1e-05
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 314 SGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQ-QVVGDDLLMSNPKRIERA 372
+ ++ I + + L Y + IE+P +D E ++ + + D+ + + +E A
Sbjct: 106 TPKEAIRLIRAL-EKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALE-A 163
Query: 373 TLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSG-ETEDSFIADL 431
+ + + ++G +TE+ LA V++ + L
Sbjct: 164 LELGAVDIL------QIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHL 217
Query: 432 SVGL 435
+ L
Sbjct: 218 AAAL 221
>gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional.
Length = 518
Score = 44.1 bits (104), Expect = 1e-04
Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 21/286 (7%)
Query: 1 MSVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMR-KAVPSVITKIKARQILDSR 59
+S + Y ++ LS + +A + V A P +++ + R K I + ++L
Sbjct: 4 VSWKRYDDEFKLSGILTEAARSCVDAHPARPKEYLAAYFREKCSGDEIRALVHNEVLSPA 63
Query: 60 GIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISE 119
G + L GM V SG + + RDG+ L + + +
Sbjct: 64 GETVLRFTLELLNGM---EVSSGAL--LSPSHGERDGEADATLDPAEY-TTEALQNSYFP 117
Query: 120 ALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADL 179
L+ + Q + D + T +G+ A+SI A A A + VPL++++ L
Sbjct: 118 RLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRAL 177
Query: 180 AGK--TNLTLPVPAFTVISGGKHAGNN--LAIQDIMILPI--GASSFGEALQMGSETYHH 233
G + T +P + G + LA++ ++ P+ + E +Q +HH
Sbjct: 178 FGSLTSVETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHH 237
Query: 234 LKAVIAEKYGAHGCNVGEDGGLA-PNISSIREGLDLVKEAINRTGI 278
+H +V DG L +++ + + L EA+ +
Sbjct: 238 FCQ-------SHNSSVRSDGSLHWDGFANLTDAVKLATEALRAVQL 276
>gnl|CDD|232994 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
adenylyltransferase. This model represents the
predominant bacterial/eukaryotic adenylyltransferase for
nicotinamide-nucleotide, its deamido form nicotinate
nucleotide, or both. The first activity,
nicotinamide-nucleotide adenylyltransferase (EC
2.7.7.1), synthesizes NAD by the salvage pathway, while
the second, nicotinate-nucleotide adenylyltransferase
(EC 2.7.7.18) synthesizes the immediate precursor of NAD
by the de novo pathway. In E. coli, NadD activity is
biased toward the de novo pathway while salvage activity
is channeled through the multifunctional NadR protein,
but this division of labor may be exceptional. The given
name of this model, nicotinate (nicotinamide) nucleotide
adenylyltransferase, reflects the lack of absolute
specificity with respect to substrate amidation state in
most species [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridine nucleotides].
Length = 193
Score = 31.5 bits (72), Expect = 0.63
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 14/83 (16%)
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED--WEHTKSVLQICQQ---- 355
P+K S + M K D P + D F+ + +T L+ ++
Sbjct: 35 ANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEV-DDFEIKRGGPSYTIDTLKHLKKKYPD 93
Query: 356 -----VVGDDLL--MSNPKRIER 371
++G D L K +
Sbjct: 94 VELYFIIGADALRSFPLWKDWQE 116
>gnl|CDD|237201 PRK12786, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 338
Score = 31.2 bits (71), Expect = 1.1
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 395 GTVTEAIEVVKLANDVPWGVVIS--------HRSGETEDSFIADLS--VGL-ASGQIKAG 443
GT E +E LA V G VI IA VG+ A ++AG
Sbjct: 186 GTAYETVEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASREDLVGMQARRALRAG 245
Query: 444 APCRGERLAK 453
P RG LAK
Sbjct: 246 QPLRGADLAK 255
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 30.2 bits (69), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 202 GNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIA 239
G NLAIQD + A+ E L+ G + L AV
Sbjct: 303 GINLAIQDAVAA---ANILAEPLRRGRVSDRDLAAVQR 337
>gnl|CDD|148070 pfam06242, DUF1013, Protein of unknown function (DUF1013). Family
of uncharacterized proteins found in Proteobacteria.
Length = 141
Score = 29.1 bits (66), Expect = 2.4
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 110 VKNI-NERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEK 168
V+ I + +++ + G+DPI Q+ + I+ + E N L +S + ++
Sbjct: 3 VQGIADGEVAQGIKGLDPIANGQLTREEIE------RCEKDPNYRLKLSKSKVIVPRRKR 56
Query: 169 EVPLY 173
+ P Y
Sbjct: 57 KGPRY 61
>gnl|CDD|182580 PRK10599, PRK10599, calcium/sodium:proton antiporter; Provisional.
Length = 366
Score = 30.2 bits (68), Expect = 2.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 374 LIPLAMLFF----SRYPSNLWINQ---IGTVTEAIEVVKLANDVPWGVVISHRSGETEDS 426
++ L +LF P + IN IG ++ A VV+ A+ V++HR GE S
Sbjct: 21 VLALVVLFLWGSSQSLPVVIAINLLALIGILSSAFSVVRHAD------VLAHRLGEPYGS 74
Query: 427 FIADLSV 433
I LSV
Sbjct: 75 LILSLSV 81
>gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD)
FMN-binding domain. DHPD catalyzes the first step in
pyrimidine degradation: the NADPH-dependent reduction of
uracil and thymine to the corresponding
5,6-dihydropyrimidines. DHPD contains two FAD, two FMN,
and eight [4Fe-4S] clusters, arranged in two electron
transfer chains that pass the dimer interface twice. Two
of the Fe-S clusters show a hitherto unobserved
coordination involving a glutamine residue.
Length = 299
Score = 29.2 bits (66), Expect = 4.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 313 KSGEDMIEMYKELCADYP----IVSIEDPFDKEDWE 344
K E ++ +EL D+P I SI ++KEDW
Sbjct: 81 KPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWT 116
>gnl|CDD|148492 pfam06899, WzyE, WzyE protein. This family consists of several
WzyE proteins which appear to be specific to
Enterobacteria. Members of this family are described as
putative ECA polymerases this has been found to be
incorrect. The function of this family is unknown.
Length = 449
Score = 29.4 bits (66), Expect = 4.7
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 361 LLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420
LL+ N I+ L P+ F+ PS LW ++ V+ AN W V+++H
Sbjct: 276 LLLQNYDHIDFQGLAPIVRDFYVFIPSWLWPDRPSL------VLNTANYFTWEVLVNHSG 329
Query: 421 GETEDSFIADLSVGLASGQIKAGA 444
+ I L V I GA
Sbjct: 330 LAISPTLIGSLVVMGGVLFIPLGA 353
>gnl|CDD|182301 PRK10201, PRK10201, G/U mismatch-specific DNA glycosylase;
Provisional.
Length = 168
Score = 27.8 bits (62), Expect = 8.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 305 PNKSGQNFKSGEDMIEMYKEL 325
PN SG N S E ++E Y+EL
Sbjct: 139 PNPSGLNRASLEKLVEAYREL 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,567,888
Number of extensions: 2432208
Number of successful extensions: 2402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2361
Number of HSP's successfully gapped: 30
Length of query: 479
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 378
Effective length of database: 6,457,848
Effective search space: 2441066544
Effective search space used: 2441066544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.5 bits)