RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011677
(479 letters)
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 628 bits (1623), Expect = 0.0
Identities = 246/440 (55%), Positives = 313/440 (71%), Gaps = 23/440 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 165 AAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEAL 224
AAE+E+PLY+HIA LAG ++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+
Sbjct: 122 AAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAM 181
Query: 225 QMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW- 283
++G+E YH LK VI +KYG NVG++GG APNI E L+LVKEAI++ G
Sbjct: 182 RLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVI 241
Query: 284 -SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
D +S Y KYDLDFKSP + +G+ + +Y++ DYP+VSIEDPFD++
Sbjct: 242 GMDVAAS--EFYRDGKYDLDFKSPTDPSRYI-TGDQLGALYQDFVRDYPVVSIEDPFDQD 298
Query: 342 DWEHTKSVLQ-ICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIGT 396
DW + Q+VGDDL ++NPKRIERA + +L L +NQIG+
Sbjct: 299 DWAAWSKFTANVGIQIVGDDLTVTNPKRIERA--VEEKACNCLL--------LKVNQIGS 348
Query: 397 VTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQ 456
VTEAI+ KLA + WGV++SHRSGETED+FIADL VGL +GQIK GAPCR ERLAKYNQ
Sbjct: 349 VTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ 408
Query: 457 LLHIEEELGDHAIYAGEDYR 476
L+ IEEELGD A +AG ++R
Sbjct: 409 LMRIEEELGDEARFAGHNFR 428
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 625 bits (1614), Expect = 0.0
Identities = 222/443 (50%), Positives = 294/443 (66%), Gaps = 24/443 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
++K+ AR + DSRG PTVEV+L T KG+FR+ VPSG +G++EALE+RDGDK ++G V
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I+ A V +D Q +D +I LD T K +LGANAIL VS+AA +A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 165 AAEKEVPLYKHIADLAGKTN--LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGE 222
AAEK VPLYKH+ADL+ LPVP V++GG HAG LA+Q+ MI P GA +F E
Sbjct: 122 AAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAE 181
Query: 223 ALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK 282
AL++GSE YH+LK++ ++YGA NVG++GG+APNI + E LDL+ +AI G
Sbjct: 182 ALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKV 241
Query: 283 W--SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339
DC SS + KYDLDFK+PN + +G + ++Y L YPIVSIEDPF
Sbjct: 242 KIGLDCASS--EFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFA 299
Query: 340 KEDWEHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQI 394
++DWE + Q+V DDL ++NPKRI A I A+L L +NQI
Sbjct: 300 EDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATA--IEKKAADALL--------LKVNQI 349
Query: 395 GTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKY 454
GT++E+I+ + + WGV++SHRSGETED+FIADL VGL +GQIK GAP R ERLAK
Sbjct: 350 GTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKL 409
Query: 455 NQLLHIEEELGDHAIYAGEDYRQ 477
NQLL IEEELGD+A++AGE++
Sbjct: 410 NQLLRIEEELGDNAVFAGENFHH 432
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 625 bits (1614), Expect = 0.0
Identities = 222/443 (50%), Positives = 296/443 (66%), Gaps = 26/443 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ AR+ILDSRG PT+EV++ T KGMFR+ VPSG +G++EA+ELRDGDK Y G V
Sbjct: 8 IQKVHAREILDSRGNPTIEVEITTGKGMFRSCVPSGASTGVHEAVELRDGDKKRYGGKGV 67
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AV+N+N I AL+G + + Q+++D+ MI LD T KG+LGANAIL S++ C+A AA
Sbjct: 68 LKAVENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAA 127
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
EK +PLYK++A+L G +T+PVP F VI+GG HAGN LA+Q+ MI P GA++F EAL+M
Sbjct: 128 EKGLPLYKYLAELTGHKEMTMPVPCFNVINGGAHAGNALAMQEFMICPTGATNFHEALRM 187
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSKWS- 284
+ETY LK VI KYG NVG++GG APN+S RE LDL+ EAI + G + +
Sbjct: 188 AAETYQCLKVVIKAKYGQDATNVGDEGGFAPNVSGAREALDLLVEAIAKAGYTGKIEIAM 247
Query: 285 DCKSS-MHNIYSTKYDLDFKSP--NKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
DC +S +N + KYDL K P K K + +I Y + YPI SIEDPF ++
Sbjct: 248 DCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPIASIEDPFAED 307
Query: 342 DWEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQ 393
DW T Q+VGDDLL++NP R++ A + ++L + +NQ
Sbjct: 308 DWAAWNKFTVEHGNF--QIVGDDLLVTNPARVQMA--MDKNACNSVL--------IKVNQ 355
Query: 394 IGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAK 453
IGT+TE + +K+A + WGV+ SHRSGETED+FIADL VGL QIK GAPCR ERL K
Sbjct: 356 IGTLTETFKTIKMAQEKGWGVMASHRSGETEDTFIADLVVGLNCKQIKTGAPCRSERLCK 415
Query: 454 YNQLLHIEEELGDHAIYAGEDYR 476
YNQL+ IEEELG+ YAG+++R
Sbjct: 416 YNQLMRIEEELGN-IPYAGKNWR 437
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 622 bits (1606), Expect = 0.0
Identities = 231/452 (51%), Positives = 296/452 (65%), Gaps = 30/452 (6%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGN 104
VI I AR+ILDSRG PT+EVD+ T G+FRA+VPSG +G+YEALELRD D YLG
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGGVFRAAVPSGASTGIYEALELRDKDPKRYLGK 61
Query: 105 SVNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTE-----KKGELGANAILAVSI 158
V AV+ + + I AL+G DP Q ID M++ LD T+ K +LGANAIL VSI
Sbjct: 62 GVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSI 121
Query: 159 AACKAGAAEKEVPLYKHIADLAGKT--NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIG 216
A C+AGAA K +PLYK+IA LAGKT + +PVP F VI+GG+HAGN LA+Q+ +I P+G
Sbjct: 122 ACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVG 181
Query: 217 ASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRT 276
A + EA++ GSETYHHLK VI KYG NVG++GG APN+++ E L+L+ EAI
Sbjct: 182 APNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKAA 241
Query: 277 GIPSSKW--SDCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVS 333
G D +S + KYDLD+K K+ +GE + E+Y+ YPI+S
Sbjct: 242 GYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPIIS 301
Query: 334 IEDPFDKEDWEH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRY 385
+EDPFD++D+ TK V + Q V+GDD+L++N RIE+A + +L
Sbjct: 302 VEDPFDQDDFASFSAFTKDVGEKTQ-VIGDDILVTNILRIEKA--LKDKACNCLL----- 353
Query: 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
L +NQIG+VTEAIE LA WGV +SHRSGETEDSFIADL VGL GQIK+G+P
Sbjct: 354 ---LKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSP 410
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
CR ERL KYNQL+ IEE LG +YAGE +R
Sbjct: 411 CRSERLCKYNQLMRIEESLGADCVYAGESFRH 442
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 617 bits (1595), Expect = 0.0
Identities = 221/440 (50%), Positives = 288/440 (65%), Gaps = 25/440 (5%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ R++LDSRG PTVEV++ T KG+FR++VPSG +G+YEA ELRDGDK Y+G
Sbjct: 6 IQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGC 65
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AVKN+NE I AL+G D + Q ++D M+ LD T KG+LGANAIL S+A KA AA
Sbjct: 66 LQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAA 125
Query: 167 EKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQM 226
K VPLY+++A LAG L LPVP F VI+GGKHAGN L Q+ MI P+ A+SF EAL+M
Sbjct: 126 AKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRM 185
Query: 227 GSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW--S 284
GSE YH L+ +I +KYG NVG++GG AP I I E L ++ EAI G
Sbjct: 186 GSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICM 245
Query: 285 DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDW 343
DC +S ++ +Y+L FKSP + + E + E Y + DYPIVSIEDP+D++D+
Sbjct: 246 DCAASETYDEKKQQYNLTFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDF 302
Query: 344 EH----TKSVLQICQQVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIG 395
T+++ Q+VGDDL ++N +RI+ A I ++L L INQIG
Sbjct: 303 AGFAGITEALKGKT-QIVGDDLTVTNTERIKMA--IEKKACNSLL--------LKINQIG 351
Query: 396 TVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYN 455
T++EAI KL + W V++SHRSGETED++IADL V L SGQIK GAPCRGER AK N
Sbjct: 352 TISEAIASSKLCMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLN 411
Query: 456 QLLHIEEELGDHAIYAGEDY 475
QLL IEEELG HA + +
Sbjct: 412 QLLRIEEELGAHAKFGFPGW 431
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 569 bits (1470), Expect = 0.0
Identities = 206/439 (46%), Positives = 281/439 (64%), Gaps = 34/439 (7%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKG-MFRASVPSGDPSGMYEALELRDGDKGTYLGNS 105
I I AR+++DSRG PTVEV++ T A VPSG +G +EALELRD +K + G
Sbjct: 11 IKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEK-RFGGKG 69
Query: 106 VNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGA 165
V AV+N+N I ++G D +Q +ID MI+LD T K LGANAILAVS+A KA A
Sbjct: 70 VLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAA 129
Query: 166 AEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQ 225
A ++PLYK+ L G + +PVP VI+GGKHAGN+L +Q+ MI+P+GA+S EA++
Sbjct: 130 ATAKIPLYKY---LGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVR 186
Query: 226 MGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKW-- 283
MGSE YH LK VI EKYG + NVG++GG AP + + RE LDL+ E++ + G
Sbjct: 187 MGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGYEDEVVFA 246
Query: 284 SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
D +S Y Y ++ K + E++++ YK L +YPIVSIEDPF +ED
Sbjct: 247 LDAAAS--EFYKDGYYYVEGKK--------LTREELLDYYKALVDEYPIVSIEDPFHEED 296
Query: 343 WEHTKSVLQICQ-QVVGDDLLMSNPKRIERATLIPL----AMLFFSRYPSNLWINQIGTV 397
+E + + Q+VGDDL ++N +R+ + I + A+L L +NQIGT+
Sbjct: 297 FEGFAMITKELDIQIVGDDLFVTNVERLRKG--IEMKAANALL--------LKVNQIGTL 346
Query: 398 TEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQL 457
+EA++ +LA +GVV+SHRSGETED+ IADLSV L SGQIK GAP RGER AKYNQL
Sbjct: 347 SEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQL 406
Query: 458 LHIEEELGDHAIYAGEDYR 476
+ IE+ELG + YAG ++R
Sbjct: 407 IRIEQELGL-SKYAGRNFR 424
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 521 bits (1345), Expect = 0.0
Identities = 198/449 (44%), Positives = 264/449 (58%), Gaps = 43/449 (9%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I KI R+I+DSRG PTVE ++ G A+ PSG +G EALELRDGDK +LG
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV +N I++AL+G D Q+ ID+ MIDLD TE K + GANAILAVS+A KA
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 164 GAAEKEVPLYKHIADLAGKTN-LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGE 222
AA K +PLY+HIA+L G ++PVP +I+GG+HA NN+ IQ+ MI P+GA + E
Sbjct: 121 AAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKE 180
Query: 223 ALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSS 281
A++MGSE +HHL V+ K VG++GG APN+ S E L ++ EA+ G
Sbjct: 181 AIRMGSEVFHHLAKVLKAK--GMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK 238
Query: 282 KWS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDP 337
+ DC +S Y KY L G + E+ +EL YPIVSIED
Sbjct: 239 DITLAMDCAAS--EFYKDGKYVLA-----GEGNKAFTSEEFTHFLEELTKQYPIVSIEDG 291
Query: 338 FDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRY 385
D+ DW+ TK + Q+VGDDL ++N K ++ + LI
Sbjct: 292 LDESDWDGFAYQTKVLGDKI-QLVGDDLFVTNTKILKEGIEKGIANSILIKF-------- 342
Query: 386 PSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAP 445
NQIG++TE + +K+A D + VISHRSGETED+ IADL+VG A+GQIK G+
Sbjct: 343 ------NQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSM 396
Query: 446 CRGERLAKYNQLLHIEEELGDHAIYAGED 474
R +R+AKYNQL+ IEE LG+ A Y G
Sbjct: 397 SRSDRVAKYNQLIRIEEALGEKAPYNGRK 425
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 520 bits (1341), Expect = 0.0
Identities = 183/457 (40%), Positives = 262/457 (57%), Gaps = 45/457 (9%)
Query: 36 SNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELR 94
+HM S+IT + AR++LDSRG PT+EV+++T G F R VPSG +G +EA+ELR
Sbjct: 8 HHHM-----SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELR 62
Query: 95 DGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAIL 154
DGDK Y G +AV N+N I+EA++G D Q ID+AMI LD T KG+LGANAIL
Sbjct: 63 DGDKSRYGGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAIL 122
Query: 155 AVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214
VSIA +A A E+PLY ++ K LP P +I+GG H+ +A Q+ MILP
Sbjct: 123 GVSIAVARAAADYLEIPLYSYLGGFNTK---VLPTPMMNIINGGSHSDAPIAFQEFMILP 179
Query: 215 IGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAIN 274
+GA +F EAL+ G+E +H LK ++ + VG++GG AP +G++ + AI
Sbjct: 180 VGAPTFKEALRYGAEIFHALKKILKSR--GLETAVGDEGGFAPRFEGTEDGVETILAAIE 237
Query: 275 RTG-IPSSKWS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADY 329
G +P DC SS Y + D+ G ++ + I+ +EL Y
Sbjct: 238 AAGYVPGKDVFLGFDCASS--EFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKY 295
Query: 330 PIVSIEDPFDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPL 377
PI++IED D+ DW+ T+ + + Q+VGDD ++N + R + LI +
Sbjct: 296 PIITIEDGMDENDWDGWKALTERLGKKV-QLVGDDFFVTNTDYLARGIQEGAANSILIKV 354
Query: 378 AMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLAS 437
NQIGT+TE E +++A + + V+SHRSGETEDS IAD++V +
Sbjct: 355 --------------NQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIADIAVATNA 400
Query: 438 GQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
GQIK G+ R +R+AKYNQLL IE++LG+ A Y G
Sbjct: 401 GQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLK 437
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 514 bits (1327), Expect = 0.0
Identities = 181/448 (40%), Positives = 255/448 (56%), Gaps = 47/448 (10%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
+ IT I A +ILDSR PT+EV + + A+VPSG +G EA+ELRD D Y G
Sbjct: 3 ATITDINAHEILDSRANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGG 62
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+N+N I +AL+G DP Q +ID+ MI+LD TE K LGANAIL VS+A A
Sbjct: 63 KGVLQAVENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYA 122
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
A ++PLY+++ G ++PVP +I+GG HA NNL Q+ MI+P+GA +F EA
Sbjct: 123 AANNADLPLYRYLGGDGGP--FSMPVPMMNIINGGAHATNNLDFQEFMIVPVGAPTFAEA 180
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ G+E +H LK + + VG++GG AP++ + +L+ EAI +P
Sbjct: 181 LRYGAEVFHALKKRLVSR--GLMSAVGDEGGFAPDLPNNEAAFELILEAIEDANYVPGKD 238
Query: 283 WS---DCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
D SS +Y +YD + + E+MI+ E YP++SIED
Sbjct: 239 IYLALDAASS--ELYQNGRYDFENNQ--------LTSEEMIDRLTEWTKKYPVISIEDGL 288
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
+ DW T+ + Q+VGDD+ ++NP +E+ A L+ L
Sbjct: 289 SENDWAGWKLLTERLENKV-QLVGDDIFVTNPDILEKGIKKNIANAILVKL--------- 338
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGT+TE + V LA +GV+ISHRSGETED+ IADL+V + QIK G+ C
Sbjct: 339 -----NQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATDARQIKTGSLC 393
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAGED 474
R +R+AKYN+LL IE EL D A YAG++
Sbjct: 394 RSDRVAKYNRLLQIERELNDQAPYAGKE 421
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 515 bits (1328), Expect = 0.0
Identities = 196/448 (43%), Positives = 267/448 (59%), Gaps = 44/448 (9%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
I K+ R+I+DSRG PTVE +++ G+ R + PSG +G +EALELRDGDKG + G
Sbjct: 26 LEIEKVIGREIIDSRGNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGG 85
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV+NIN ISE L GMD +D+AMID D T+ K + GANA+LAVSIA KA
Sbjct: 86 KGVTKAVQNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKA 145
Query: 164 GAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEA 223
AA VPLY+ + L LPVP +++GG HA N + +Q+ MI+P+GA SF EA
Sbjct: 146 AAAALGVPLYRFLGGLNAN---RLPVPMMNILNGGAHAANTVDVQEFMIMPVGAESFREA 202
Query: 224 LQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTG-IPSSK 282
L+ +E +H L ++ K +VG++GG AP+++S E ++ + EA+ G P
Sbjct: 203 LRQCTEVFHALAGLLKSK--GLATSVGDEGGFAPDLASDEEAIEYILEAVKLAGYEPGRD 260
Query: 283 WS---DCKSS-MHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPF 338
+ D SS +Y L K + F S E ++ +K LC YPIVSIED
Sbjct: 261 FVLAMDAASSEWKGEKKGEYILP-----KCKRKFASEE-LVAHWKSLCERYPIVSIEDGL 314
Query: 339 DKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAMLFFSRYP 386
D+EDWE T+ + Q+VGDDL ++N +R+ + + LI L
Sbjct: 315 DEEDWEGWQYMTRELGDKI-QLVGDDLFVTNTERLNKGIKERCGNSILIKL--------- 364
Query: 387 SNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQIKAGAPC 446
NQIGTV+E +E +K+A+ + V+SHRSGETED+ IADL+V L +GQIK GAP
Sbjct: 365 -----NQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAVALNTGQIKTGAPS 419
Query: 447 RGERLAKYNQLLHIEEELGDHAIYAGED 474
R ER+AKYNQLL IEEELGD A+Y G
Sbjct: 420 RSERVAKYNQLLRIEEELGDSAVYPGFT 447
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 498 bits (1284), Expect = e-175
Identities = 179/453 (39%), Positives = 249/453 (54%), Gaps = 55/453 (12%)
Query: 36 SNHMRKAVPSVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELR 94
SN M VI ++A ++LDSRG PTV+ ++ G A VPSG +G EALELR
Sbjct: 1 SNAM-----LVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELR 55
Query: 95 DGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAIL 154
D D+ + G V +AV N+NE I++ ++G+D Q+Q+D + +LD T LGANA L
Sbjct: 56 DNDE-RFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATL 114
Query: 155 AVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILP 214
VS+A +A AA +PLY++ L G LPVP +I+GG HA NN+ Q+ MI+P
Sbjct: 115 GVSMATARAAAAALGMPLYRY---LGGANASILPVPMCNIINGGAHANNNVDFQEFMIMP 171
Query: 215 IGASSFGEALQMGSETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAIN 274
G +SF EAL+ E Y LK +A H +G++GG APN+++ E +DL+ I
Sbjct: 172 FGFTSFKEALRSVCEIYAILKKELANS--GHSTALGDEGGFAPNLANNTEPIDLLMTCIK 229
Query: 275 RTGIPSSKW--SDCKSSMHNIYST-KYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPI 331
+ G + D S+ + KY ++ K+ S E +IE Y ELCA YPI
Sbjct: 230 KAGYENRVKIALDVAST--EFFKDGKYHMEGKA--------FSSEALIERYVELCAKYPI 279
Query: 332 VSIEDPFDKEDWE----HTKSVLQICQQVVGDDLLMSNPKRIER--------ATLIPLAM 379
SIED + D+E T+ + Q +VGDDL ++N + A LI
Sbjct: 280 CSIEDGLAENDFEGWIKLTEKLGNKIQ-LVGDDLFVTNEDILREGIIKKMANAVLIKP-- 336
Query: 380 LFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ 439
NQIGT+T+ + V+LA + V+SHRSGE+ED+FIAD +V L +GQ
Sbjct: 337 ------------NQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQ 384
Query: 440 IKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472
IK GA RGER AKYN+LL IE E + Y G
Sbjct: 385 IKTGALARGERTAKYNRLLEIEFESDE---YLG 414
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 64.7 bits (157), Expect = 2e-11
Identities = 58/372 (15%), Positives = 111/372 (29%), Gaps = 65/372 (17%)
Query: 109 AVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAI-LAVSIAACKAGAAE 167
+ I + I+ L+G + + + DK G AI ++ A A A
Sbjct: 89 FIPVIEKEIAPKLIGREI---TNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKT 145
Query: 168 KEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMG 227
++V + + I D VP F + D MI+ +
Sbjct: 146 RKVTMAEVIRDEYNPGAEINAVPVFAQ-----SGDDRYDNVDKMII-----------KEA 189
Query: 228 SETYHHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCK 287
H L + EK G G + E + +++ I + + D
Sbjct: 190 DVLPHALINNVEEKLGLKG-------------EKLLEYVKWLRDRIIKLRVRE----DYA 232
Query: 288 SSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTK 347
H D+ + K+ D I+ E + + IE P D ED +
Sbjct: 233 PIFH------IDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHL-RIEGPMDVEDRQKQM 285
Query: 348 SVL----------QICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTV 397
+ + ++V D+ + + ++ T + + +G V
Sbjct: 286 EAMRDLRAELDGRGVDAELVADEWCNT-VEDVKFFTDNKAGHMV------QIKTPDLGGV 338
Query: 398 TEAIEVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASGQ----IKAGAPCRGERLAK 453
+ + G ET S ++G+A G K G +
Sbjct: 339 NNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIV 398
Query: 454 YNQLLHIEEELG 465
N++ + +G
Sbjct: 399 KNEMNRVLALVG 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-08
Identities = 105/657 (15%), Positives = 181/657 (27%), Gaps = 261/657 (39%)
Query: 1 MSVQEYLNKHMLS------------RKIEDAVNAAVRAK-------SPDPVL-------- 33
+Y K +LS + ++D + + + S D V
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 34 -----------FISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLF--THKGMFRA--- 77
F+ +R +++ IK Q P++ ++ ++
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRMYIEQRDRLYNDNQV 125
Query: 78 ----SVPSGDP-SGMYEAL-ELRD-------GDKG---TYLGNSVNRAVK-------NI- 113
+V P + +AL ELR G G T++ V + K I
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 114 -----NERISEALVGM--------DPILQSQIDQAM-IDLDKTEKKGEL--------GAN 151
N E ++ M DP S+ D + I L + EL N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 152 A--ILA-VS----IAA----CK--------------AGAAEKEVPLYKHIADLAGKTNLT 186
+L V A CK + A + L H L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 187 LPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAHG 246
L + +L + + P S E+++ G T+ + K V +K
Sbjct: 306 L----LLKYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---- 355
Query: 247 CNVGEDGGLAPNISSIREGLDLVKEAINR------------TGIPSSK----WSD----- 285
+ I L++++ A R IP+ W D
Sbjct: 356 ------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 286 --------CKSSM------------HNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKEL 325
K S+ +IY L+ K E+ +++ +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKL---------ENEYALHRSI 449
Query: 326 CADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLL-------MSNPKRIERATLIPLA 378
Y +I FD +D + D + N + ER TL
Sbjct: 450 VDHY---NIPKTFDSDD----LIPPYL------DQYFYSHIGHHLKNIEHPERMTLFR-- 494
Query: 379 MLFFSRYPSNL-WINQIGTVTEAIEVVKLAND-VPWGVVISHRSGETEDSFIADLSVGLA 436
M+F + ++ Q K+ +D W SG ++ L
Sbjct: 495 MVFL-----DFRFLEQ-----------KIRHDSTAWNA-----SGSILNTLQ-QLK--FY 530
Query: 437 SGQIKAGAPCRGERL----------------AKYNQLLHIEEELGDHAIYAGEDYRQ 477
I P + +KY LL I D AI+ E ++Q
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE-EAHKQ 586
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 53.9 bits (129), Expect = 5e-08
Identities = 52/337 (15%), Positives = 93/337 (27%), Gaps = 61/337 (18%)
Query: 113 INERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAI-LAVSIAACKAGAAEKEVP 171
+N+ I L G D DK G L A+ +S A A A
Sbjct: 93 LNDHIKPLLEGRDV---DAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRL 149
Query: 172 LYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETY 231
+ + D + +P F ++ D MIL +
Sbjct: 150 KTEVVCDEWQLPCVPEAIPLFGQSGDDRYIA-----VDKMIL-----------KGVDVLP 193
Query: 232 HHLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMH 291
H L + EK G G +RE + + + I ++H
Sbjct: 194 HALINNVEEKLGFKG-------------EKLREYVRWLSDRILSLRSSP----RYHPTLH 236
Query: 292 NIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED----WEHTK 347
D+ + + I ++ P+ IE P D +
Sbjct: 237 ------IDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPL-YIEGPVDAGNKPDQIRMLT 289
Query: 348 SVLQICQ------QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAI 401
++ + ++V D+ + + I T + + +G + +
Sbjct: 290 AITKELTRLGSGVKIVADEW-CNTYQDIVDFTDAGSCHMV------QIKTPDLGGIHNIV 342
Query: 402 EVVKLANDVPWGVVISHRSGETEDSFIADLSVGLASG 438
+ V N ETE S + V LA+
Sbjct: 343 DAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAAR 379
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 6e-08
Identities = 54/298 (18%), Positives = 86/298 (28%), Gaps = 115/298 (38%)
Query: 71 HKGMFRASVPSGDPSGM--YE----ALELRD-GDKGTY--LGNSVNRAVKNIN------- 114
+GM GM Y+ A ++ + D G S+ V N N
Sbjct: 1628 EQGM-----------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIH 1675
Query: 115 ------ERISEALVGM--DPILQSQIDQAMIDLDKTEK---------KGELGA--N---A 152
+RI E M + I+ ++ I + E KG L A A
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 153 ILAVSIAACKAGAAEKEVPLYK----H----------------IADLA------GKTNLT 186
+ + AA + ++ +P H I L G T +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT-MQ 1794
Query: 187 LPVPAFTVISGGKHAGNNLAIQDIMILP--IGASSFGEALQMGSETYHHLKAVIAEKYGA 244
+ VP + +N + I I P + AS EALQ + E+ G
Sbjct: 1795 VAVP------RDELGRSNYGM--IAINPGRVAASFSQEALQ-----------YVVERVGK 1835
Query: 245 HGCNVGEDGGL-------APN----ISSIREGLDLVKEAINRTGIPSSKWSDCKSSMH 291
G L N + LD V +N + + + S+
Sbjct: 1836 ------RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 40.0 bits (93), Expect = 0.002
Identities = 52/286 (18%), Positives = 87/286 (30%), Gaps = 107/286 (37%)
Query: 16 IEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVDLF-THKGM 74
+ED++ P P+L ISN ++ V + K + + VE+ L
Sbjct: 324 LEDSL--ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----VEISLVNGA--- 374
Query: 75 FRASVPSGDPSGMYEALELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQ 134
+ V SG P +Y L L L R K A G+D QS+I
Sbjct: 375 -KNLVVSGPPQSLY-GLNLT-------L-----RKAK--------APSGLD---QSRI-- 407
Query: 135 AMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKH-----------IADLAGKT 183
++ +N L V+ P H DL
Sbjct: 408 ------PFSERKLKFSNRFLPVA------------SPF--HSHLLVPASDLINKDLVKNN 447
Query: 184 ------NLTLPVPAFTVISGG--KHAGNNLA---IQDIMILPIGASSFGEALQMGSETYH 232
++ +PV + G + +++ + I+ LP+ E T H
Sbjct: 448 VSFNAKDIQIPV--YDTFDGSDLRVLSGSISERIVDCIIRLPV----KWETTTQFKAT-H 500
Query: 233 HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGI 278
++ +G G GL ++G TG+
Sbjct: 501 ----ILD--FGP-----GGASGLGVLTHRNKDG----------TGV 525
Score = 36.6 bits (84), Expect = 0.021
Identities = 52/318 (16%), Positives = 92/318 (28%), Gaps = 149/318 (46%)
Query: 92 ELRDGDKG-TYLGNSVNRAV--------KNINERISEAL-----VGMDPILQSQ------ 131
ELR KG T + AV ++ + +A+ +G ++
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG----VRCYEAYPNT 317
Query: 132 -IDQAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVP 190
+ ++ L+ + + E + +L++S +++ + ++ KTN LP
Sbjct: 318 SLPPSI--LEDSLENNEGVPSPMLSIS------NLTQEQ--VQDYVN----KTNSHLPAG 363
Query: 191 AFTVIS---GGKH---AGN-------NLAIQDIMI----------------------LPI 215
IS G K+ +G NL ++ LP+
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 216 GASSFGEALQMGSETYH-HLKAVIAEKYGAHGCNVGEDGGLAPNISSIREGLDLVKEAIN 274
+ +H HL L P I + DLVK ++
Sbjct: 424 ASP------------FHSHL--------------------LVPASDLINK--DLVKNNVS 449
Query: 275 RTG----IPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYP 330
IP +Y T +D G D+ + +
Sbjct: 450 FNAKDIQIP-------------VYDT-FD---------------GSDLRVLSGSISER-- 478
Query: 331 IVS--IEDPFDKEDWEHT 346
IV I P WE T
Sbjct: 479 IVDCIIRLPV---KWETT 493
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 33.8 bits (77), Expect = 0.14
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 282 KWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
+W K +N + +Y K N + K+ ++ ED F +E
Sbjct: 527 EWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEE 586
Query: 342 DWEHTKSVLQICQQV 356
K+ +C +V
Sbjct: 587 LHSDYKNKCTMCPEV 601
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A
{Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Length = 398
Score = 32.3 bits (74), Expect = 0.37
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 91 LELRDGDKG---TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGE 147
+ RDG +G +Y + + + + I++ L+G DP +I ++ + +
Sbjct: 67 IRSRDGFEGVGFSYSKRAGGQGIYAHAKEIADNLLGEDPNDIDKIYTKLLWAGASVGRSG 126
Query: 148 LGANAILAVSIA----ACKA---------GAAEKEVPLY 173
+ AI + IA K GA V Y
Sbjct: 127 MAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCY 165
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit;
structural genomics, PSI-biology; 2.80A {Homo sapiens}
PDB: 2ezw_A 3im3_A 3im4_A
Length = 95
Score = 29.7 bits (66), Expect = 0.49
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQ 54
+ Y+ H + + ++D + +K P+ F+ H K +I ARQ
Sbjct: 40 CELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEENRQILARQ 91
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein;
PSI-biology, structural genomics, NEW YORK structural
genomi research consortium; 2.40A {Sorangium cellulosum}
Length = 389
Score = 31.5 bits (72), Expect = 0.61
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 19/112 (16%)
Query: 91 LELRDGDKG--------TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKT 142
+EL DG G + G + + + + EA+VG D L +
Sbjct: 40 VELADGTLGFGEAAPLPAFNGETQDGSRAAA-VSLREAVVGSDA---RAWRAVARALREA 95
Query: 143 EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV 194
G A A+ A A +PL+ G + L T+
Sbjct: 96 SGGGAGAARC--AIETAILDALTKRAGMPLWA----FFGGSGTALTT-DITI 140
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 30.4 bits (69), Expect = 1.3
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 91 LELRDGDKG--------TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKT 142
L L +G KG G+++ I E + ++G D S Q + K
Sbjct: 38 LTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSDL---SDYKQTLELAFKK 94
Query: 143 EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV 194
A A+ +A A E+++ + K L G ++ ++
Sbjct: 95 V-MFNSAAKM--AIDLAYHDLLAKEQDISVAK----LLGAKANSIVT-DVSI 138
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein
structure initiative (PSI) II, PSI-2, 9382A mandelate
racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Length = 393
Score = 30.3 bits (69), Expect = 1.4
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 16/102 (15%)
Query: 91 LELRDGDKG---TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGE 147
+E G +G +Y + I+ AL+G DP +++ + + +
Sbjct: 54 IETAGGHQGLGFSYSKRAGGPGQFAHAREIAPALIGEDPSDIAKLWDKLCWAGASAGRSG 113
Query: 148 LGANAILAVSIA----ACKA---------GAAEKEVPLYKHI 176
L AI A +A K G+ V Y
Sbjct: 114 LSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTS 155
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 30.5 bits (68), Expect = 1.4
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 2 SVQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDS 58
+ Y+ H + + ++D + +K P+ F+ H K +I ARQ +S
Sbjct: 17 GCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEENRQILARQKSNS 73
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus,
cell MEMB disulfide bond, endocytosis, HOST-virus inter
receptor, secreted, transmembrane; HET: NAG FUC BMA MAN;
2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A*
3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Length = 640
Score = 30.1 bits (67), Expect = 1.8
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 273 INRTGIPSSKWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIV 332
+ +GIP+ + C+ + + T D + + + K E+ +
Sbjct: 425 LAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLT-H 483
Query: 333 SIEDPFDKEDW 343
+E D E +
Sbjct: 484 DVELNLDYERY 494
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 29.5 bits (67), Expect = 2.2
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 20/93 (21%)
Query: 99 GTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSI 158
G S + ++ AL+G +P I++ +D T A A+ I
Sbjct: 52 DHVTGESWESTFHTLKHTLTPALIGQNP---MNIEKIHDMMDNTIYG---VPTAKAAIDI 105
Query: 159 A----ACKA----------GAAEKEVPLYKHIA 177
A K G +E P+ ++
Sbjct: 106 ACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLS 138
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 29.6 bits (67), Expect = 2.7
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIA 159
T+ S I+ ++ LVG D S + QA + +D+ +A A+ IA
Sbjct: 54 TWGSESAETIKVIIDNYLAPLLVGKDA---SNLSQARVLMDRAVTG---NLSAKAAIDIA 107
Query: 160 ----ACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
+A + + + G ++P+
Sbjct: 108 LHDLKARA----LNLSIADL---IGGTMRTSIPI 134
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 29.2 bits (66), Expect = 3.6
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIA 159
Y S + NI+ ++ L+G D S I+ AM+ L+++ + A + A
Sbjct: 60 AYGNESPDSIKTNIDRFVAPLLIGQDA---SNINAAMLRLEQSIRG---NTFAKSGIESA 113
Query: 160 ----ACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
K +P+ + L G+ LPV
Sbjct: 114 LLDAQGKR----LGLPVSEL---LGGRVRDALPV 140
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
{Thermus thermophilus} SCOP: c.26.1.3
Length = 160
Score = 28.2 bits (64), Expect = 3.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 303 KSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFD 339
++P+K GQ S E+ + + +E A V F
Sbjct: 36 ENPSKRGQYLFSAEERLAIIREATAHLANVEA-ATFS 71
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 28.8 bits (65), Expect = 4.5
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 103 GNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGA--NAILAVSIA- 159
S I++ + L+G D S++ + + G G A+ AV +A
Sbjct: 55 LPSDRLITSCISDCYAPLLLGEDASDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVAL 114
Query: 160 ---ACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
K VPL+ + L G +
Sbjct: 115 WDIKAKK----AGVPLWHY---LGGARTAGVEA 140
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 28.7 bits (64), Expect = 4.6
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 282 KWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
+W K + ++ S K+ + + D + K+ ++ V+ E+ +K
Sbjct: 233 QWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYD---ILKQELDEFNEVAFENEINKR 289
Query: 342 DWEHTKSVLQICQQV 356
D + + L +C
Sbjct: 290 DGAYIE--LCVCSVE 302
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 28.4 bits (64), Expect = 4.8
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 91 LELRDGDKG--------TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKT 142
+ DG G G ++ ++ L+G D + + +L +
Sbjct: 36 IRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDI---RTLPRLCRELAER 92
Query: 143 EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV 194
A A A+ +A A +PL + + G+ + +LP + T+
Sbjct: 93 L-PAAPAARA--ALDMALHDLVAQCLGLPLVE----ILGRAHDSLPT-SVTI 136
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 28.4 bits (64), Expect = 5.0
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 21/96 (21%)
Query: 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGAN--AILAVS 157
+Y S I ++ L G ++ ++ G + N A A+
Sbjct: 59 SYGVESPEAISSAITHYLTPLLKGQPA---DNLNALTARMN-----GAIKGNTFAKSAIE 110
Query: 158 IA----ACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
A KA +P+ L G LPV
Sbjct: 111 TALLDAQGKA----LGLPVSAL---LGGALQTALPV 139
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 28.4 bits (64), Expect = 5.0
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 91 LELRDGDKG--------TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKT 142
+ G G G+S++ I+ + AL+G + + + D+
Sbjct: 36 ITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSL---AGYEAILHDIQHL 92
Query: 143 EKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTV 194
G + A A AV +A A +PLY+ + G TL +TV
Sbjct: 93 L-TGNMSAKA--AVEMALYDGWAQMCGLPLYQ----MLGGYRDTLET-DYTV 136
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 28.0 bits (63), Expect = 6.8
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 99 GTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSI 158
G+ + + E ++ A++GMDP Q D+ + T K +A A+ I
Sbjct: 56 GSTYIAAHAGGTRAALELLAPAILGMDP---RQHDRIWDRMRDTLKG---HRDARAALDI 109
Query: 159 A----ACKA----------GAAEKEVPLYKHI 176
A A +A G VP+ I
Sbjct: 110 ACWDIAAQAAGLPLCDMTGGRVAGPVPVISSI 141
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD
2210633, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Length = 275
Score = 27.9 bits (63), Expect = 7.0
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 18/74 (24%)
Query: 3 VQEYLNKH----ML-----SRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKAR 53
Q+ LNK +L S + E+ + + P V+ + +
Sbjct: 25 FQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQR---------TH 75
Query: 54 QILDSRGIPTVEVD 67
Q+L++ P +E+
Sbjct: 76 QLLEASNTPVLEIA 89
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar
binding protein; 1.50A {Homo sapiens} PDB: 3nv2_A*
3nv3_A* 3nv4_A*
Length = 138
Score = 27.2 bits (60), Expect = 7.1
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 187 LPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY 242
P+P T I GG + ++ + + A F L G+ HL E
Sbjct: 6 YPMPFITTILGGLYPSKSILLSGTV--LPSAQRFHINLCSGNHIAFHLNPRFDENA 59
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 28.0 bits (63), Expect = 7.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 244 AHGCNVGEDGGLAPN--ISSIREGLDLVKE 271
HG E G+ PN +S + E +++ K+
Sbjct: 70 KHGIEWVEVSGVKPNPVLSKVHEAVEVAKK 99
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 28.0 bits (63), Expect = 7.9
Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 106 VNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTEKKGELGANAILAVSIA----A 160
+ + ++ + + L+G +P +I++ + D +T E G+ + A
Sbjct: 49 YSVDLHDLKQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLC 108
Query: 161 CKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
K ++ + L G+ + V
Sbjct: 109 AKY----LDISVSDF---LGGRVKEKIKV 130
>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, isomerase, PSI-2; 2.30A
{Rubrobacter xylanophilus dsm 9941}
Length = 372
Score = 28.0 bits (63), Expect = 7.9
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 95 DGDKG---TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGAN 151
G KG TY SV R + +++ G D + + M + + +GA
Sbjct: 44 GGRKGLGYTYGDVSVGRF---VESKLAGVAEGSDALSPPAVWARMQAAIRNAGRPGVGAM 100
Query: 152 AILAVSIA----ACKA---------GAAEKEVPLY 173
A+ AV IA + EVP+Y
Sbjct: 101 AVSAVDIALWDLKARLLGLPLADALPRFHAEVPVY 135
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 27.7 bits (62), Expect = 8.3
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 91 LELRDGDKGTYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGA 150
+E DG G G A +++ L+G DP + + + M + L
Sbjct: 71 IEATDGTVGFATGFGGPPACWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPI 130
Query: 151 NAILAVSIA----ACKAGAAEKEVPLYKHIADLAGKTNLTLPV 189
I + +A K + P+Y+ + G T L
Sbjct: 131 AVISVIDLALWDLLGKV----RNEPVYRL---IGGATKERLDF 166
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 27.7 bits (62), Expect = 9.0
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 20/140 (14%)
Query: 100 TYLGNSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIA 159
YLG ++ + + ++G +P I++ + +G A V A
Sbjct: 60 FYLGETLETTKVILKNHLLPMILGKEP---LSIEEFNHLIKNGI-RGNHFARC--GVENA 113
Query: 160 ----ACKAGAAEKEVPLYKHIADLAGKTNLTLPVPAFTVISGGKHAGNNLAIQDIMILPI 215
K ++ L + K + + +G L I + +
Sbjct: 114 YWDLIAKK----NKISLKAM---IEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIET 166
Query: 216 GASSFGEALQMGSETYHHLK 235
E+LQ G Y +K
Sbjct: 167 LIHQVEESLQEG---YRRIK 183
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein
structure initiative II(PSI II), NYSGXRC, structural
genomics; 2.33A {Silicibacter pomeroyi}
Length = 344
Score = 27.5 bits (62), Expect = 9.4
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 17 EDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQILDSRGIPTVEVD 67
E+ V + + P V+ +A AR +LD+ GIP VE+
Sbjct: 113 EEKVLYEMLSWRPSGVIIAGLEHSEA---------ARAMLDAAGIPVVEIM 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,493,762
Number of extensions: 477760
Number of successful extensions: 1407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 73
Length of query: 479
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 382
Effective length of database: 3,993,456
Effective search space: 1525500192
Effective search space used: 1525500192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)