RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011677
(479 letters)
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 296 bits (758), Expect = 2e-98
Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 16/296 (5%)
Query: 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAH 245
LP P +I+GG H+ +A Q+ MILP+GA +F EAL+ G+E +H LK ++ +
Sbjct: 4 VLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRG--L 61
Query: 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK--WSDCKSSMHNIY-STKYDLDF 302
VG++GG AP +G++ + AI G K + + Y + D+
Sbjct: 62 ETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDCASSEFYDKERKVYDY 121
Query: 303 KSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH----TKSVLQICQQVVG 358
G ++ + I+ +EL YPI++IED D+ DW+ T+ + + Q +VG
Sbjct: 122 TKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERLGKKVQ-LVG 180
Query: 359 DDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISH 418
DD ++N + R A + NQIGT+TE E +++A + + V+SH
Sbjct: 181 DDFFVTNTDYLARGIQEGAANSILIKV------NQIGTLTETFEAIEMAKEAGYTAVVSH 234
Query: 419 RSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGED 474
RSGETEDS IAD++V +GQIK G+ R +R+AKYNQLL IE++LG+ A Y G
Sbjct: 235 RSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEYRGLK 290
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 292 bits (748), Expect = 5e-97
Identities = 157/297 (52%), Positives = 201/297 (67%), Gaps = 9/297 (3%)
Query: 183 TNLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKY 242
++L LPVPAF VI+GG HAGN LA+Q+ MILP+GA SF +A+++G+E YH LK VI +KY
Sbjct: 1 SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKY 60
Query: 243 GAHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYST-KYDLD 301
G NVG++GG APNI E L+LVKEAI++ G + Y KYDLD
Sbjct: 61 GKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLD 120
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDD 360
FKSP + + +G+ + +Y++ DYP+VSIEDPFD++DW Q+VGDD
Sbjct: 121 FKSPTDPSR-YITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDD 179
Query: 361 LLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRS 420
L ++NPKRIERA L +NQIG+VTEAI+ KLA + WGV++SHRS
Sbjct: 180 LTVTNPKRIERAVEEKAC------NCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRS 233
Query: 421 GETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
GETED+FIADL VGL +GQIK GAPCR ERLAKYNQL+ IEEELGD A +AG ++R
Sbjct: 234 GETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRN 290
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 289 bits (741), Expect = 5e-96
Identities = 137/298 (45%), Positives = 179/298 (60%), Gaps = 15/298 (5%)
Query: 184 NLTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYG 243
L LPVP F VI+GGKHAGN L Q+ MI P+ A+SF EAL+MGSE YH L+ +I +KYG
Sbjct: 2 ELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYG 61
Query: 244 AHGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCK---SSMHNIYSTKYDL 300
NVG++GG AP I I E L ++ EAI G S ++ +Y+L
Sbjct: 62 QDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFAICMDCAASETYDEKKQQYNL 121
Query: 301 DFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQ---VV 357
FKSP + + E + E Y + DYPIVSIEDP+D++D+ + + + +V
Sbjct: 122 TFKSPEP---TWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDFAGFAGITEALKGKTQIV 178
Query: 358 GDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVIS 417
GDDL ++N +RI+ A + NQIGT++EAI KL + W V++S
Sbjct: 179 GDDLTVTNTERIKMAIEKKACNSLLLKI------NQIGTISEAIASSKLCMENGWSVMVS 232
Query: 418 HRSGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDY 475
HRSGETED++IADL V L SGQIK GAPCRGER AK NQLL IEEELG HA + +
Sbjct: 233 HRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGAHAKFGFPGW 290
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 285 bits (730), Expect = 3e-94
Identities = 140/294 (47%), Positives = 188/294 (63%), Gaps = 8/294 (2%)
Query: 186 TLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGAH 245
LPVP V++GG HAG LA+Q+ MI P GA +F EAL++GSE YH+LK++ ++YGA
Sbjct: 4 VLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGAS 63
Query: 246 GCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYST-KYDLDFKS 304
NVG++GG+APNI + E LDL+ +AI G + + KYDLDFK+
Sbjct: 64 AGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKN 123
Query: 305 PNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQIC-QQVVGDDLLM 363
PN + +G + ++Y L YPIVSIEDPF ++DWE + Q+V DDL +
Sbjct: 124 PNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTAGIQIVADDLTV 183
Query: 364 SNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLANDVPWGVVISHRSGET 423
+NPKRI A + A NQIGT++E+I+ + + WGV++SHRSGET
Sbjct: 184 TNPKRIATA-IEKKAADALLLKV-----NQIGTLSESIKAAQDSFAAGWGVMVSHRSGET 237
Query: 424 EDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAGEDYRQ 477
ED+FIADL VGL +GQIK GAP R ERLAK NQLL IEEELGD+A++AGE++
Sbjct: 238 EDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIEEELGDNAVFAGENFHH 291
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 279 bits (716), Expect = 4e-92
Identities = 118/293 (40%), Positives = 167/293 (56%), Gaps = 17/293 (5%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
++PVP +I+GG+HA NN+ IQ+ MI P+GA + EA++MGSE +HHL V+ K
Sbjct: 4 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKG-- 61
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKS 304
VG++GG APN+ S E L ++ EA+ G K D +M S Y
Sbjct: 62 MNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGK--DITLAMDCAASEFYKDGKYV 119
Query: 305 PNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQ---QVVGDDL 361
G + E+ +EL YPIVSIED D+ DW+ ++ Q+VGDDL
Sbjct: 120 LAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDL 179
Query: 362 LMSNPKRIERATLIPLAMLFFSRYPSNLWI--NQIGTVTEAIEVVKLANDVPWGVVISHR 419
++N K ++ +++ I NQIG++TE + +K+A D + VISHR
Sbjct: 180 FVTNTKILKEG--------IEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHR 231
Query: 420 SGETEDSFIADLSVGLASGQIKAGAPCRGERLAKYNQLLHIEEELGDHAIYAG 472
SGETED+ IADL+VG A+GQIK G+ R +R+AKYNQL+ IEE LG+ A Y G
Sbjct: 232 SGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNG 284
>d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 139
Score = 171 bits (435), Expect = 2e-52
Identities = 86/137 (62%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I KI AR+ILDSRG PTVEVDL+T KG+FRA+VPSG +G+YEALELRDGDK YLG V
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
+AV +IN I+ AL+ G+ + Q ++D M++LD TE K + GANAIL VS+A CKAG
Sbjct: 62 LKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAG 121
Query: 165 AAEKEVPLYKHIADLAG 181
AAE+E+PLY+HIA LAG
Sbjct: 122 AAERELPLYRHIAQLAG 138
>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 141
Score = 168 bits (427), Expect = 3e-51
Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
++K+ AR + DSRG PTVEV+L T KG+FR+ VPSG +G++EALE+RDGDK ++G V
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVHEALEMRDGDKSKWMGKGV 61
Query: 107 NRAVKNINERISEALVGMDPIL--QSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I+ A V + + Q +D +I LD T K +LGANAIL VS+AA +A
Sbjct: 62 LHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAA 121
Query: 165 AAEKEVPLYKHIADLAG-KT 183
AAEK VPLYKH+ADL+ KT
Sbjct: 122 AAEKNVPLYKHLADLSKSKT 141
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Length = 139
Score = 168 bits (427), Expect = 3e-51
Identities = 75/138 (54%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S I KI R+I+DSRG PTVE ++ G A+ PSG +G EALELRDGDK +LG
Sbjct: 1 SKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLG 60
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
V +AV +N I++AL+G D Q+ ID+ MIDLD TE K + GANAILAVS+A KA
Sbjct: 61 KGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKA 120
Query: 164 GAAEKEVPLYKHIADLAG 181
AA K +PLY+HIA+L G
Sbjct: 121 AAAAKGMPLYEHIAELNG 138
>d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 139
Score = 164 bits (417), Expect = 8e-50
Identities = 76/135 (56%), Positives = 99/135 (73%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
I K+ R++LDSRG PTVEV++ T KG+FR++VPSG +G+YEA ELRDGDK Y+G
Sbjct: 4 IQKVHGREVLDSRGNPTVEVEVTTEKGVFRSAVPSGASTGVYEACELRDGDKKRYVGKGC 63
Query: 107 NRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAGAA 166
+AVKN+NE I AL+G D + Q ++D M+ LD T KG+LGANAIL S+A KA AA
Sbjct: 64 LQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAA 123
Query: 167 EKEVPLYKHIADLAG 181
K VPLY+++A LAG
Sbjct: 124 AKGVPLYRYLASLAG 138
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 137
Score = 161 bits (409), Expect = 9e-49
Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 45 SVITKIKARQILDSRGIPTVEVDLFTHKGMF-RASVPSGDPSGMYEALELRDGDKGTYLG 103
S+IT + AR++LDSRG PT+EV+++T G F R VPSG +G +EA+ELRDGDK Y G
Sbjct: 2 SIITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGG 61
Query: 104 NSVNRAVKNINERISEALVGMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKA 163
+AV N+N I+EA++G D Q ID+AMI LD T KG+LGANAIL VSIA +A
Sbjct: 62 LGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARA 121
Query: 164 GAAEKEVPLYKHI 176
A E+PLY ++
Sbjct: 122 AADYLEIPLYSYL 134
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus
vulgaris) [TaxId: 6707]}
Length = 139
Score = 155 bits (394), Expect = 2e-46
Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKGTYLGNSV 106
ITK+ AR I DSRG PTVEVDL+T KG+FRA+VPSG +G++EALE+RDGDK Y G SV
Sbjct: 2 ITKVFARTIFDSRGNPTVEVDLYTSKGLFRAAVPSGASTGVHEALEMRDGDKSKYHGKSV 61
Query: 107 NRAVKNINERISEALV--GMDPILQSQIDQAMIDLDKTEKKGELGANAILAVSIAACKAG 164
AVKN+N+ I ++ G+ Q + D+ M LD TE K LGANAIL VS+A CKAG
Sbjct: 62 FNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAG 121
Query: 165 AAEKEVPLYKHIADLA 180
AAE +PLY+HIA+LA
Sbjct: 122 AAELGIPLYRHIANLA 137
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 147 bits (371), Expect = 1e-41
Identities = 42/299 (14%), Positives = 79/299 (26%), Gaps = 71/299 (23%)
Query: 185 LTLPVPAFTVISGGKHAGNNLAIQDIMILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
+ +P F G+ + D MIL G AL ++++
Sbjct: 3 VPEAIPLF-----GQSGDDRYIAVDKMILK-GVDVLPHAL------INNVE--------- 41
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYD--LDF 302
+G G +RE + + + I S +Y L
Sbjct: 42 --EKLGFKGE------KLREYVRWLSDRILSLR----------------SSPRYHPTLHI 77
Query: 303 KSPNKSGQNFK-SGEDMIEMYKELCADYP--IVSIEDPFDKEDWEHTKSVLQICQ----- 354
G F E L + + IE P D + +L
Sbjct: 78 DVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTR 137
Query: 355 -----QVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNLWINQIGTVTEAIEVVKLAND 409
++V D+ + + I T + + +G + ++ V N
Sbjct: 138 LGSGVKIVADEWC-NTYQDIVDFTDAGSCHMV------QIKTPDLGGIHNIVDAVLYCNK 190
Query: 410 VPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAPCRGERLAKYNQLLHIEEEL 464
ETE S +++ ++ K G +N++ L
Sbjct: 191 HGMEAYQGGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALL 249
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 132 bits (334), Expect = 2e-36
Identities = 32/261 (12%), Positives = 78/261 (29%), Gaps = 40/261 (15%)
Query: 225 QMGSETYHHLKAVIAEKYGA--HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSK 282
Q G + Y ++ +I ++ H + L + E + +++ I + +
Sbjct: 12 QSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVRED- 70
Query: 283 WSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELC---ADYPIVSIEDPFD 339
Y+ + +D + + + M + + L + + IE P D
Sbjct: 71 -----------YAPIFHIDVYGTIGAAFDVDI-KAMADYIQTLAEAAKPFHL-RIEGPMD 117
Query: 340 KEDW----------EHTKSVLQICQQVVGDDLLMSNPKRIERATLIPLAMLFFSRYPSNL 389
ED + ++V D+ + ++ T + +
Sbjct: 118 VEDRQKQMEAMRDLRAELDGRGVDAELVADEWCN-TVEDVKFFTDNKAGHMV------QI 170
Query: 390 WINQIGTVTEAIEVVKLANDVPWGVVISHRSGETEDS--FIADLSVGLASGQI--KAGAP 445
+G V + + G ET S ++ + + Q+ K G
Sbjct: 171 KTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQVLAKPGMG 230
Query: 446 CRGERLAKYNQLLHIEEELGD 466
+ N++ + +G
Sbjct: 231 VDEGMMIVKNEMNRVLALVGR 251
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 32.0 bits (72), Expect = 0.17
Identities = 34/259 (13%), Positives = 75/259 (28%), Gaps = 29/259 (11%)
Query: 187 LPVPAFTVISGGKHAGNNLAIQDI--MILPIGASSFGEALQMGSETYHHLKAVIAEKYGA 244
+PV V+ GG G+ L + G+ G+ + S +K V E
Sbjct: 210 VPVGLVNVVQGGAETGSLLCHHPNVAKVSFTGSVPTGKKVMEMS--AKTVKHVTLE---- 263
Query: 245 HGCNVGEDGGLAPNISSIREGLDLVKEAINRTGIPSSKWSDCKSSMHNIYSTKYDLDFKS 304
GG +P + L+ + + + +
Sbjct: 264 -------LGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEE 316
Query: 305 PNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEHTKSVLQICQQVVGDDLLMS 364
K + G+ ++ + + DK ++ + + + G + L
Sbjct: 317 VVKRTKAIVVGDPLLT-----ETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTP 371
Query: 365 NPKRIERATLIPLAMLFFSRYPSNLW-------INQIGTVTEAIEVVKLANDVPWGVVIS 417
+ +++ + +L R + + EV++ AN+ +G+
Sbjct: 372 SDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASG 431
Query: 418 --HRSGETEDSFIADLSVG 434
R A+L G
Sbjct: 432 VFTRDISRAHRVAANLEAG 450
>d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris
pv. campestris [TaxId: 340]}
Length = 139
Score = 30.5 bits (68), Expect = 0.21
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 21/145 (14%)
Query: 47 ITKIKARQILDSRGIPTVEVDLFTHKGMFRASVPSGDPSGMYEALELRDGDKG-----TY 101
I ++ + PT + A P D S Y L + +
Sbjct: 3 IIALETHDVR----FPTSRELDGSD-----AMNPDPDYSAAYVVLRTDGAEDLAGYGLVF 53
Query: 102 LGNSVNRAVKNINERISEALVGMDPILQSQIDQAMID-LDKTEKKGELGAN------AIL 154
N ++E +VG+ A L + LG AI
Sbjct: 54 TIGRGNDVQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIG 113
Query: 155 AVSIAACKAGAAEKEVPLYKHIADL 179
AV AA A PL++ IA+L
Sbjct: 114 AVINAAWDLAARAANKPLWRFIAEL 138
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type
I-alpha regulatory subunit {Cow (Bos taurus) [TaxId:
9913]}
Length = 50
Score = 27.4 bits (61), Expect = 0.43
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRK 41
+ Y+ KH + ++D++ A+ P+ F+ + K
Sbjct: 5 CELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFEK 43
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2)
binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Length = 338
Score = 28.4 bits (62), Expect = 2.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 2 SVQEYLNKHMLSRKIEDAVNAAVR 25
QE+L++ R + +A++ AVR
Sbjct: 4 GYQEFLDEFPEQRNLTNALSEAVR 27
>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 27.0 bits (59), Expect = 3.1
Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 17/110 (15%)
Query: 3 VQEYLNKHMLSRKIEDAVNAAVRAKSPDPVLFISNHMRKAVPSVITKIKARQIL------ 56
+++N+ + V + +++P+ S + I+ + L
Sbjct: 9 ASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAY-------RISASARGKELRLILSP 61
Query: 57 -DSRGIPTVEVDLFTHKGM---FRASVPSGDPSGMYEALELRDGDKGTYL 102
+ L GM F+ P + L
Sbjct: 62 LPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLAL 111
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 27.7 bits (61), Expect = 3.4
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 282 KWSDCKSSMHNIYSTKYDLDFKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKE 341
+W K ++ STK+ K+ +N + D + K+ + + E+ +K
Sbjct: 226 QWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYD---ILKQELNGFKEATFENEINKR 282
Query: 342 DWEHTK 347
D +
Sbjct: 283 DNLYNH 288
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 26.3 bits (57), Expect = 5.6
Identities = 1/41 (2%), Positives = 11/41 (26%)
Query: 302 FKSPNKSGQNFKSGEDMIEMYKELCADYPIVSIEDPFDKED 342
+ + + +D + +++ ++
Sbjct: 45 KLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHHLVEDG 85
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 93
Score = 25.2 bits (55), Expect = 6.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 51 KARQILDSRGIPTVEVDLFTHKGMFR 76
+ +ILD + I VD+ +
Sbjct: 23 EVTRILDGKRIQYQLVDISQDNALRD 48
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr
virus [TaxId: 10376]}
Length = 230
Score = 26.2 bits (57), Expect = 7.9
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 303 KSPNKSGQ----------NFKSGEDMIEMYKELCADYPIVSIEDPFDKEDWEH 345
+ P GQ F + +Y EL P S D + W
Sbjct: 65 QDPYHGGQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWAS 117
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 26.2 bits (56), Expect = 8.3
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 49 KIKARQILDSRGIPTVE 65
K++++ + G+P
Sbjct: 1 KLRSKLLWQGAGLPVAP 17
>d1wgba_ b.45.1.2 (A:) Putative flavoprotein TTHA0420 {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 25.9 bits (56), Expect = 8.5
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 443 GAPCRGERLAKYNQLLHIEEELGDHAIYAGE 473
G P E + GDH++ E
Sbjct: 105 GLPLLTELPYWLEAEVRHLYPGGDHSLVVAE 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,765,481
Number of extensions: 83491
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 27
Length of query: 479
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,185,626
Effective search space: 462394140
Effective search space used: 462394140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)