Query 011678
Match_columns 479
No_of_seqs 234 out of 2011
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 6.6E-58 1.4E-62 446.4 55.7 436 23-462 12-451 (455)
2 PRK10189 MATE family multidrug 100.0 8.1E-53 1.8E-57 414.7 56.3 432 25-459 26-467 (478)
3 PRK00187 multidrug efflux prot 100.0 3.1E-52 6.8E-57 410.7 57.2 431 24-457 6-447 (464)
4 PRK01766 multidrug efflux prot 100.0 2.2E-50 4.8E-55 399.2 57.0 433 23-458 7-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 2.2E-50 4.8E-55 397.1 54.3 425 24-453 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.6E-49 3.4E-54 387.8 55.3 424 24-458 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 1.7E-37 3.6E-42 312.0 52.3 413 30-454 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 4.7E-37 1E-41 307.8 48.5 415 31-454 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 5.9E-37 1.3E-41 292.8 44.0 338 36-376 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 2E-37 4.3E-42 299.6 33.9 450 22-473 22-471 (473)
11 PRK15099 O-antigen translocase 100.0 5.4E-35 1.2E-39 285.9 47.2 404 30-452 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 6.5E-29 1.4E-33 243.1 51.5 386 58-454 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 1.5E-27 3.1E-32 229.0 51.8 420 28-455 7-438 (518)
14 PRK10459 colanic acid exporter 100.0 3.1E-28 6.6E-33 243.9 48.3 399 26-453 3-404 (492)
15 COG2244 RfbX Membrane protein 100.0 5.6E-26 1.2E-30 227.0 42.3 389 25-436 3-394 (480)
16 COG0534 NorM Na+-driven multid 99.9 1.8E-21 3.9E-26 190.5 27.3 210 244-456 12-223 (455)
17 PRK00187 multidrug efflux prot 99.9 3.3E-21 7.1E-26 190.5 28.0 207 243-453 4-214 (464)
18 PRK10367 DNA-damage-inducible 99.9 3.8E-21 8.3E-26 188.2 28.2 207 245-453 5-211 (441)
19 PRK10189 MATE family multidrug 99.9 6.4E-21 1.4E-25 188.4 26.8 204 246-452 26-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 1.2E-20 2.6E-25 186.2 26.6 208 245-454 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.6E-20 3.6E-25 186.1 27.3 209 243-454 6-218 (456)
22 PF01943 Polysacc_synt: Polysa 99.8 1.4E-16 2.9E-21 147.1 33.1 271 30-317 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 4.8E-17 1E-21 163.8 31.7 205 24-230 219-428 (502)
24 TIGR00797 matE putative efflux 99.8 2.3E-17 5.1E-22 157.5 25.2 194 257-453 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 2E-18 4.4E-23 145.9 8.2 162 257-420 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.8 3E-15 6.5E-20 146.9 31.3 206 25-232 195-405 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 1.2E-15 2.6E-20 153.1 25.6 203 23-230 220-434 (488)
28 PF01554 MatE: MatE; InterPro 99.7 7.6E-18 1.6E-22 142.4 5.9 160 36-196 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 1.3E-13 2.8E-18 133.3 34.8 231 25-264 229-464 (518)
30 PRK10459 colanic acid exporter 99.7 5.8E-13 1.3E-17 133.6 34.4 200 24-229 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.6 1.1E-12 2.4E-17 119.4 31.8 247 46-316 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 2.8E-13 6E-18 132.8 26.2 199 24-229 211-411 (416)
33 COG2244 RfbX Membrane protein 99.6 1.8E-12 3.9E-17 129.8 26.9 187 23-215 208-396 (480)
34 KOG1347 Uncharacterized membra 99.3 4.2E-10 9E-15 109.9 20.7 206 245-454 24-230 (473)
35 PF04506 Rft-1: Rft protein; 99.3 3.8E-08 8.2E-13 97.7 33.3 420 31-453 4-469 (549)
36 KOG2864 Nuclear division RFT1 99.1 1.7E-06 3.8E-11 80.4 34.9 411 25-452 5-447 (530)
37 PF07260 ANKH: Progressive ank 99.0 3.4E-06 7.4E-11 75.1 29.4 316 25-348 8-342 (345)
38 PF04506 Rft-1: Rft protein; 98.6 9.4E-06 2E-10 80.9 22.2 203 27-230 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.4 4.6E-05 1E-09 62.7 17.8 80 150-231 2-81 (146)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00033 7.1E-09 64.3 21.6 185 255-453 5-190 (273)
41 KOG2864 Nuclear division RFT1 98.2 0.00014 3.1E-09 68.0 17.9 203 26-230 237-449 (530)
42 PF14667 Polysacc_synt_C: Poly 98.2 1.5E-05 3.2E-10 65.6 10.1 79 373-454 2-80 (146)
43 PF13440 Polysacc_synt_3: Poly 98.0 0.0027 5.8E-08 57.4 22.1 164 272-452 7-171 (251)
44 PF07260 ANKH: Progressive ank 97.9 0.016 3.4E-07 52.4 23.6 171 245-422 7-180 (345)
45 COG4267 Predicted membrane pro 97.6 0.061 1.3E-06 49.7 38.4 320 76-423 72-414 (467)
46 PF04505 Dispanin: Interferon- 69.8 30 0.00066 24.8 6.8 41 303-343 33-73 (82)
47 TIGR00822 EII-Sor PTS system, 68.7 92 0.002 28.2 16.9 31 300-330 110-140 (265)
48 PF00558 Vpu: Vpu protein; In 67.1 11 0.00023 26.9 3.8 28 442-469 21-48 (81)
49 COG4267 Predicted membrane pro 67.0 1.2E+02 0.0026 29.0 20.9 133 302-451 76-208 (467)
50 PF05975 EcsB: Bacterial ABC t 66.7 1.3E+02 0.0028 29.2 17.1 37 322-358 89-125 (386)
51 PF05977 MFS_3: Transmembrane 62.4 1.9E+02 0.004 29.5 37.8 48 29-76 11-60 (524)
52 COG2211 MelB Na+/melibiose sym 52.4 2.5E+02 0.0055 28.0 30.2 51 26-76 10-63 (467)
53 PRK01637 hypothetical protein; 50.8 2E+02 0.0044 26.4 18.4 11 312-322 114-124 (286)
54 PF01102 Glycophorin_A: Glycop 45.6 31 0.00068 26.9 3.6 26 430-455 67-92 (122)
55 PF06963 FPN1: Ferroportin1 (F 40.7 3.7E+02 0.0081 26.6 17.7 44 305-348 49-92 (432)
56 PF03547 Mem_trans: Membrane t 40.0 2.1E+02 0.0046 27.5 9.4 24 412-438 106-129 (385)
57 PF05313 Pox_P21: Poxvirus P21 38.1 1.4E+02 0.0031 25.0 6.3 28 204-231 135-162 (189)
58 TIGR00383 corA magnesium Mg(2+ 37.5 98 0.0021 29.0 6.4 58 396-456 252-317 (318)
59 PF05975 EcsB: Bacterial ABC t 36.9 4E+02 0.0087 25.8 16.7 35 100-134 89-124 (386)
60 PF03904 DUF334: Domain of unk 34.1 2.5E+02 0.0054 24.6 7.5 38 100-137 142-179 (230)
61 PRK09757 PTS system N-acetylga 33.8 3.7E+02 0.008 24.5 17.3 31 301-331 112-142 (267)
62 PTZ00370 STEVOR; Provisional 33.7 72 0.0016 29.0 4.4 28 427-454 254-281 (296)
63 PRK10739 putative antibiotic t 32.2 3.3E+02 0.0072 23.5 8.8 59 311-373 21-79 (197)
64 COG3715 ManY Phosphotransferas 31.9 3.9E+02 0.0085 24.2 13.3 58 302-359 112-170 (265)
65 PF10337 DUF2422: Protein of u 30.9 5.5E+02 0.012 25.6 11.6 27 24-50 13-39 (459)
66 PRK09546 zntB zinc transporter 29.1 1.7E+02 0.0036 27.6 6.4 50 404-456 266-323 (324)
67 PRK11085 magnesium/nickel/coba 28.9 1.8E+02 0.0039 27.3 6.4 58 396-456 250-315 (316)
68 PRK11111 hypothetical protein; 23.5 5.1E+02 0.011 22.7 8.6 58 312-373 28-85 (214)
69 TIGR00427 membrane protein, Ma 22.8 5E+02 0.011 22.4 8.7 59 311-373 24-82 (201)
70 KOG2468 Dolichol kinase [Lipid 22.5 7.6E+02 0.017 24.4 10.4 71 255-334 379-449 (510)
71 PF11446 DUF2897: Protein of u 22.4 71 0.0015 20.9 1.8 20 434-453 9-28 (55)
72 PF12794 MscS_TM: Mechanosensi 22.1 6.9E+02 0.015 23.7 23.2 24 326-349 121-144 (340)
73 PF14184 YrvL: Regulatory prot 21.4 4.3E+02 0.0092 21.1 13.1 105 109-215 5-110 (132)
74 COG5393 Predicted membrane pro 20.3 4.1E+02 0.009 20.5 6.8 30 427-456 80-109 (131)
75 KOG0569 Permease of the major 20.2 9E+02 0.019 24.4 32.9 55 44-99 35-90 (485)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=6.6e-58 Score=446.44 Aligned_cols=436 Identities=25% Similarity=0.350 Sum_probs=415.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 23 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
+++..|+++++++|++++++.+.+++.+|++++||+|++++++.+++.++..++ ..+..|++.|+++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 467999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999887765 99999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccccchhhHHHHHHHHHHHhhH
Q 011678 182 SACATLCFHILLCWYLVFK-AN-FRIVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSDIFSCIKEFFSFALPT 258 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~ 258 (479)
.+++++++|+++|++|+++ ++ +|+.|+++||++++.+..++..++++++++ ......+..+++++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999998875 22333344467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011678 259 VVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAV 338 (479)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 338 (479)
+++++.+...+...+.++++++ ++++|+|+++.++.++.++++.|++++..|.+++++|+||+|++++..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHH
Q 011678 339 TEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLA 418 (479)
Q Consensus 339 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 418 (479)
.+++..+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+.+||.||++.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 011678 419 SVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARM 462 (479)
Q Consensus 419 ~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (479)
+++.+.+ +|..|+|+++..++.+..+...+++++.+|+++..+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999976 899999999999999999999999999888877543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.1e-53 Score=414.69 Aligned_cols=432 Identities=16% Similarity=0.180 Sum_probs=399.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchH
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~ 104 (479)
+..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|+||+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 5699999999999999999999999999999999999999999999999886 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC--CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG--QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
++..++++.++..++++.+++ +.+.++++.++. .|+|+.+.+.+|+++..++.|+..+...+.+.+|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988865 778889999884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHHhc-c-cccccccc-cchhhHHHHHHHHHH
Q 011678 182 SACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYS-S-SCEKTRVF-IFSDIFSCIKEFFSF 254 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~l~~ 254 (479)
.+++..++|+++++++++. +++|+.|+++|+.+++.+..++..+++.++ + ..+.+.++ +.+.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 9999999999999999975 479999999999999999988876666543 2 22222122 123467899999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011678 255 ALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVM 334 (479)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (479)
|+|.+++...........+.+++.++ ++++++|+++.++.++.+++..|++++..|.+++++|++|++++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999998888888888888886 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHh
Q 011678 335 VLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVG 414 (479)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 414 (479)
++++.+++.++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 011678 415 IPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQ 459 (479)
Q Consensus 415 i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (479)
+|+.+++....++|..|+|++..+++.+..++..+++++.+|+++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999988778999999999999999999999999999999873
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.1e-52 Score=410.68 Aligned_cols=431 Identities=23% Similarity=0.320 Sum_probs=394.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccch
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~ 103 (479)
++..|++++.++|.+++++...+...+|+.+++|+|++++++++++.++.++. ..+..|+++|.++.++|++|+||+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 46799999999999999999999999999999999999999999999999987 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011678 104 IGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSA 183 (479)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (479)
+++..+.++.+...++++..++..+.++++.+++.++|+.+.+.+|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999988877665577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc-cc-ccccchhhHHHHHHHHHHHhh
Q 011678 184 CATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCE-KT-RVFIFSDIFSCIKEFFSFALP 257 (479)
Q Consensus 184 ~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~p 257 (479)
++..++|++++++++++ +++|+.|+++|+.+++.+..+...+++++++..+ .+ +.+..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 99999999999999976 3689999999999999888877766666543221 11 122234567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011678 258 TVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLA 337 (479)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (479)
.+++++.+......+..++++++ +++++++++++++..+.+.+..+++++..+.++|++|+||+|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccC--cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q 011678 338 VTEAVIVGTILFCCRYVLAYAFNS--DK---DVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYI 412 (479)
Q Consensus 338 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 412 (479)
..+++++++++.++++++.++|++ |+ |+.+.+..++++.+++.++++++....+++++.|+++.+++.++.+.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 6788999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 011678 413 VGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWR 457 (479)
Q Consensus 413 ~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+++|+.+++.+.+++|+.|+|+++.+++++..+.....+++++|+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~ 447 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTAR 447 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999988877666544433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.2e-50 Score=399.21 Aligned_cols=433 Identities=22% Similarity=0.353 Sum_probs=399.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 23 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
+++.+|++++.++|.+++++...+...+|+.+++++|++++++++.+.++..+. ..+..|++.+..+.+||++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 368899999999999999999999999999999999999999999999987776 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
+.++..+.++.+++..++++.++ +.+.++++.+++.+++..+.+.+|+++..++.++..+..++++.+|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888765 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccccccchhhHHHHHHHHHHH
Q 011678 182 SACATLCFHILLCWYLVFK----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCE--KTRVFIFSDIFSCIKEFFSFA 255 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 255 (479)
.+.+..++|+++++++++. +++|+.|+++++.+++.+..++..++.+++++.+ +.+.++.+++++..|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 4689999999999999999999888777654321 112222345678899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011678 256 LPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMV 335 (479)
Q Consensus 256 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 335 (479)
+|.++++..+...+..+..++++++ ++++++++++.++.++...++.+++.+..+.+++++|+||++++++..+.+.+
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999886 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhH
Q 011678 336 LAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGI 415 (479)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 415 (479)
+++.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++.+++....++++|.||++.+++.++.+.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 011678 416 PLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 458 (479)
Q Consensus 416 ~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
|+.+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887899999999999999999998888777766554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.2e-50 Score=397.06 Aligned_cols=425 Identities=15% Similarity=0.142 Sum_probs=390.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
++..|++++.++|.+++++...+++++|+.+++|+ |++++++++.+.++..+. ..+..+++.+.++.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 46889999999999999999999999999999996 999999999999999987 7788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
++++.+++++.++.+.+++..++ ..+.++++.+++.+++..+.+.+|+++..++.++..+...+.+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988865 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHH
Q 011678 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVM 261 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 261 (479)
.++...++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++...+...+..+.+++..|++++.|.|..++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888899999999999999999998877766543322211222345678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011678 262 FCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEA 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (479)
.....+.....+.+++.++ +++++++++++.++..+.+++..|++++..|.+++++|+||+|++++..+.+.++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g-~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYG-SALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888887 346799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHH
Q 011678 342 VIVGTILFCCRYVLAYAFNS-DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASV 420 (479)
Q Consensus 342 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~ 420 (479)
++.+++++++++++..+|++ |+|+.+.+.+++++.+++.+++++.....+.+||.|+++.++..++.. +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999999999999999999999999887 4789999999
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 421 LCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 421 l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+... +|..|+|+++.+++.+..+....++++
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9875 799999999999999988877665543
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=387.84 Aligned_cols=424 Identities=17% Similarity=0.154 Sum_probs=373.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
.+..|+++++++|.++++++..+.+.+|+.++||+ |++++++++++.++.++. ..+..+++.+.++.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35688999999999999999999999999999998 788999999999999987 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
++++..++++.++.+++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888865 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhh-HHHHHHHHHHHhhHHH
Q 011678 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDI-FSCIKEFFSFALPTVV 260 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~p~~~ 260 (479)
.+++..++|+++++++++.+++|+.|+++||.+++.+..++..++++++++.+....+..+++ ++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999999888999999999999999999888777765432221111111222 3578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 011678 261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTE 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 340 (479)
++..+...+...+.++++++ ++++++|+++.++.++.+++..|++++.+|.+++++|+||+|++|+..+++.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cchhHHHHHHHHHHHhHHH
Q 011678 341 AVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGW---QHIGAYVNLGAYYIVGIPL 417 (479)
Q Consensus 341 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~l 417 (479)
+.+++++++.+++++..+|++|+|+.+.+..++++.++..+..........++++.+| ++.++.+++.+.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999998764433355555555666665 99999999988754222
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 011678 418 ASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRK 458 (479)
Q Consensus 418 ~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
..+ ++|..|+|++..+++.+..++...++++. |++
T Consensus 400 ---~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 ---TLP--WLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ---HHH--HcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 222 37999999999999999999887766554 643
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.7e-37 Score=312.04 Aligned_cols=413 Identities=14% Similarity=0.068 Sum_probs=350.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HhHHHhHHHHHHhhhcccccchHHH
Q 011678 30 LSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTL-ASVAIATSFTNVTGIIPL-FGFACALETLCGQAYGAKQYQQIGT 106 (479)
Q Consensus 30 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~-~~~~~a~~i~~~~~~~~~-~gl~~a~~~~~s~~~~~~~~~~~~~ 106 (479)
+.|.+...+++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 599999 899999999877633333 568888888777664332 57777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHh--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011678 107 YTYSAMFFCIAICFP-ISVL-WIFMDKVLILL--GQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (479)
Q Consensus 107 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (479)
.+.+++......+.+ ..++ +.+.+++..++ +.+++..+.+.+|+++..++.++..+....++.+|+.+|++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777777666555444 3444 77778888877 3466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHH
Q 011678 183 ACATLCFHILLCWYLVFKANFRIVGAA--LAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVV 260 (479)
Q Consensus 183 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 260 (479)
++..+++++...+++. +++|..|++ +++.+++.+..++..++.+|++...+ .+ .+.+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK--PR-FNFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--Cc-CCCCChhHHHHHHHHHHHHH
Confidence 9998888777544444 568999988 99999999998888777766532111 11 12345789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011678 261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYF-IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVT 339 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 339 (479)
++....+....|..+.+.++ ++++++|+.+.++.+++.. +..+++++..|.+++++|++|+++.++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998866665 6689999999999998875 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhH
Q 011678 340 EAVIVGTILFCCRYVLAYAFNS----DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGI 415 (479)
Q Consensus 340 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 415 (479)
+++|+++++.++++++..++.+ |+|.++.+.+++++++++.++.++.....+.+++.||+|.+++.++.+. ++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHH
Confidence 9999999999999999999876 5677899999999999999999999999999999999999999999986 8899
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 416 PLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 416 ~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
++++++.+. +|..|+|+++.+++.+..+...++.+|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999775 8999999999999999988887666654
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=4.7e-37 Score=307.81 Aligned_cols=415 Identities=14% Similarity=0.116 Sum_probs=349.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHHH
Q 011678 31 SFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTY 109 (479)
Q Consensus 31 ~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~~ 109 (479)
.|.+.|.+++++...+.+++|+.+++|+ |++++|+++.+.++..++......|++++..+.++|+.+++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4778999999999999999999999995 999999999999999987455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011678 110 SAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLC 188 (479)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 188 (479)
.++.+..+.+++..++ ..+.+++...+..+++. ..++++..+..++..+....++.+|+++|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888765 66677766666555543 245778888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCccchhHHHHHHHHHHHHHHHHHHHHhccccc--ccccccchhhHHHHHHHHHHHhhHHHH
Q 011678 189 FHILLCWYLVFK-----ANFRIVGAALAIGLSYCLNAVILALYMRYSSSCE--KTRVFIFSDIFSCIKEFFSFALPTVVM 261 (479)
Q Consensus 189 ~~i~~~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~p~~~~ 261 (479)
+++.++..++.. .++++.|+++++.+++.+..++..++.+++++.+ ..+.+..+.+++..|++++++.|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998876655542 3467788899999999999998877666543321 111122244567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-----hh---HHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011678 262 FCLEWWSFEILILLSGLLPN-----SK---LETSVL-SICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACV 332 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (479)
++...+....|+.++++... .. +..+.| +++.++.+++..+..+++++..|.++++.|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988865421 01 223333 4667788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHH
Q 011678 333 VMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYI 412 (479)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 412 (479)
+.++...++.|.++++.++++++..++.++++ +.++++++++..++..+.....+.+++.||+|..++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999986 8
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 413 VGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 413 ~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
+++++.+.+...+++|..|+|+++.+++.+..+...+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988733348999999999999999998887777653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=5.9e-37 Score=292.77 Aligned_cols=338 Identities=27% Similarity=0.411 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHHHHHHHHH
Q 011678 36 PMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFC 115 (479)
Q Consensus 36 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 115 (479)
|.+++++...+...+|+.+++++|++++++++.+.++..+. ..+..|++++..+.++++.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988876 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 011678 116 IAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLC 194 (479)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 194 (479)
..++++.+++ ..+.+++..+++.+++..+.+..++++..++.++..+..+..+.+|+.||++.+...+++..+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998865 888899998888788888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 011678 195 WYLVF-KAN-FRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEIL 272 (479)
Q Consensus 195 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 272 (479)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+.++++..+.+++..|+++++++|.+++++...+....+
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 566 7899999999999999999888877764443333223334567899999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 273 ILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCR 352 (479)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (479)
+.+++.++ ++++++|+++.++.++...++.+++++..|.++++++++|+++.++..+++.++.+.++++...++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998875 7789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcHHHHHHHHHHHHHH
Q 011678 353 YVLAYAFNSDKDVVNYVSELVPLL 376 (479)
Q Consensus 353 ~~i~~l~~~~~~~~~~~~~~l~i~ 376 (479)
+++.++|++|+++.+.+.+++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999888765
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2e-37 Score=299.62 Aligned_cols=450 Identities=46% Similarity=0.765 Sum_probs=424.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhccccc
Q 011678 22 AFVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY 101 (479)
Q Consensus 22 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~ 101 (479)
+.+...|++++++.|..+..+.+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..++++|++|++++
T Consensus 22 ~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 22 QLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 33688999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 102 QQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
+......+++.......+++...++.+.++++..++.++++...+..|.+...+..+........+..+|++++.....+
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~ 181 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLV 181 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHH
Q 011678 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVM 261 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 261 (479)
......++|+.+++++++.+++|..|++++..+++.........+..... ....|..+... ++.++++++.++|.++.
T Consensus 182 ~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 182 IGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 99999999999999999999999999999999999999999988887765 45555555555 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011678 262 FCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEA 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (479)
...+++.+....+..+.+++...+++..++..++....++.+.+++.+.+.++++.+|++|.+.+|.....+...++.++
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g 339 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG 339 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999997788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHH
Q 011678 342 VIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVL 421 (479)
Q Consensus 342 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 421 (479)
...+..++..++.+..+|++|+|+.+...+..++++...+.++.+.+..+..++.|..++..++++.+.+++++|....+
T Consensus 340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l 419 (473)
T KOG1347|consen 340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYL 419 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccC
Q 011678 422 CFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYS 473 (479)
Q Consensus 422 ~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (479)
....++|..|.|.++..+.............+.+|+++.++.+++......+
T Consensus 420 ~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 420 GFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 9888899999999999998888888888888899999999888887765543
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.4e-35 Score=285.92 Aligned_cols=404 Identities=11% Similarity=0.014 Sum_probs=344.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHH
Q 011678 30 LSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYT 108 (479)
Q Consensus 30 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~ 108 (479)
+.|.+.+...+.+...+.+++...+++|+ |++++|.++..+++...+......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 67889999999999999999999999995 9999999999999999875666899999999999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011678 109 YSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL 187 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 187 (479)
+.++.+....+++++++ ..+.+++...+..+++. ..+..+..+..++..+.....+.+|+.++.+.++..++.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988865 78888888877666653 23455566666677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHHHHHH
Q 011678 188 CFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWW 267 (479)
Q Consensus 188 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 267 (479)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++.+|++..+.+..+ .+.+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444433 24999999999999999988877777655432221112 234678899999999999999999999
Q ss_pred HHHHHHHHHh-cCCChhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011678 268 SFEILILLSG-LLPNSKLETSVLSICLTISST-HYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVG 345 (479)
Q Consensus 268 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (479)
....++.+++ .++ ++++|+|+++.|+.+. ...+..+++++..|.++++ +|.|+.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 554 7899999999999774 5788999999999999985 6788899999999999999999999
Q ss_pred HHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHh
Q 011678 346 TILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVL 425 (479)
Q Consensus 346 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 425 (479)
+++.++++++..++.+|+ ++.+.+++++++++.++...+........+.++++.....++.. .++.+++++++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-
Confidence 999999999999999876 77789999999999999988888887777888888777777776 48899999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011678 426 NLRGKGLWIGIMTGSAVQAIVLAIITV 452 (479)
Q Consensus 426 ~~g~~g~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+|..|+++++.+++.+..+.......
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999987765543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.5e-29 Score=243.06 Aligned_cols=386 Identities=15% Similarity=0.125 Sum_probs=336.5
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HhHHHhHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 011678 58 LGEL-TLASVAIATSFTNVTGIIPL-FGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLI 134 (479)
Q Consensus 58 lg~~-~~~~~~~a~~i~~~~~~~~~-~gl~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 134 (479)
+|.. +..++..+.++..++...+. .+++++..|..++.. ++++++.++..+..+.+....+++++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4653 56789999999998843444 468999999999999 7888999999999888888888887766 888899998
Q ss_pred Hh--CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 011678 135 LL--GQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR---IVGAA 209 (479)
Q Consensus 135 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 209 (479)
.+ +.+++..+.+.+.+++..+..++..+..++.+.+|+++|+..+....+..++..+....++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 87 4577888999999999999999999999999999999999999988888887766655555443 66 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 011678 210 LAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVL 289 (479)
Q Consensus 210 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
++..++.++..++.....+|.+...+...+ ...+..|++++...|..+......+...+++.+.+.++ +.+++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFD---WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999999988888876543221111 12357899999999999999999999999999999887 5589999
Q ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc----CcHH
Q 011678 290 SICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN----SDKD 364 (479)
Q Consensus 290 ~~~~~i~~~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~ 364 (479)
+.+.++.+++..+ ..+++++..|.+++...++|.++.++..++..+....+.+|+++.+..+++++++++. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 9999999998855 5899999999999999999999999999999999999999999999999999998874 3677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 011678 365 VVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQA 444 (479)
Q Consensus 365 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~ 444 (479)
..+.....+++++++.++.++...+...+.+.||+|.++..++.+. ++++.+++++.+. +|..|+++++.++.++..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999986 8999999888886 899999999999999999
Q ss_pred HHHHHHHhhc
Q 011678 445 IVLAIITVTT 454 (479)
Q Consensus 445 ~~~~~~~~~~ 454 (479)
++.....+|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888777665
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.5e-27 Score=228.96 Aligned_cols=420 Identities=14% Similarity=0.057 Sum_probs=350.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch-HHHHHHHHHHHHHHHHHHHHHHh-HHHhHHHHHHhhhcccccchH
Q 011678 28 KKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GE-LTLASVAIATSFTNVTGIIPLFG-FACALETLCGQAYGAKQYQQI 104 (479)
Q Consensus 28 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~-~~~~~~~~a~~i~~~~~~~~~~g-l~~a~~~~~s~~~~~~~~~~~ 104 (479)
.+++|.++-.....+++.+.+++...++++. |+ ....++..+..+.+++--.+..| ++++..|...++..++.+|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 4566777777788888899999999999994 88 46679999999999885555544 799999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCC---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 011678 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQD---PEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLF 180 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (479)
++..+........+.+..+++ .++.+++......+ ++....+....+++.+..++..+.....+.+++.+++..+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777776665666666666655 77777777454322 33333578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHH
Q 011678 181 LSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVV 260 (479)
Q Consensus 181 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~ 260 (479)
+..+..++.-+.....+....+....+.+|++.++-+...++.+..++|.+...+....+ +.+..|++.+...|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHH
Confidence 998888887775555554432224678899999999999999999999876433322222 22688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011678 261 MFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVT 339 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 339 (479)
.....+++..+++.+.+.+. +.+++.+..+.|+.+++. .+..+++++..|.++++..++|.++.++..+++.+.+++
T Consensus 244 ~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 447899999999999999 556999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhH
Q 011678 340 EAVIVGTILFCCRYVLAYAFN----SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGI 415 (479)
Q Consensus 340 ~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 415 (479)
+++|.++.+..+++|+.+++. -++++...+++.+..++++.++..+..++...+++.+|+|.++++++++. ++++
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHH
Confidence 999999999999999998873 24667888999999999999999999999999999999999999999996 9999
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011678 416 PLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTN 455 (479)
Q Consensus 416 ~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
.+++.+.+. +|..|++.+..++..+...+.++.++|+.
T Consensus 401 ~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999777775 89999999999999888888777766653
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=3.1e-28 Score=243.87 Aligned_cols=399 Identities=11% Similarity=0.054 Sum_probs=322.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchH
Q 011678 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (479)
Q Consensus 26 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~ 104 (479)
..++..+.+.+..+++....+.+++...+++|+ ||+++|.++.+.++..++......|++++... . +| +.
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~--~~ 73 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QD--IS 73 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---cc--CC
Confidence 346788999999999999999999999999995 99999999999999999866778888887532 1 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011678 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSA 183 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (479)
++.....+.+....++++.++ ..+.+++..++ ++|+. ...+++..+..++..+.....+.++.+++.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 234556666777777766655 44455554444 34443 2356677777777888888999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHH
Q 011678 184 CATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFC 263 (479)
Q Consensus 184 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 263 (479)
....+...++...+.. .++|..+.+++..+++.+..++.....+++ +..+ .+.+++..|++++++.|...+++
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~-----~~~~~~~~k~ll~~~~~~~~~~~ 221 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-YRPA-----LHFSLASVKPNLSFGAWQTAERI 221 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-CCcc-----ceecHHHHHHHHhhhHHHHHHHH
Confidence 8888887777766655 468999999999999888776554333222 1111 12345678999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 011678 264 LEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAV 342 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 342 (479)
...+....|+++++.+. |++++|.|+.+.++.+.+.... ..++++..|..++. ++|.++.++.+++..+....+++
T Consensus 222 ~~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~ 298 (492)
T PRK10459 222 INYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINF 298 (492)
T ss_pred HHHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886 5889999999999998866544 55788999999885 57889999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHH
Q 011678 343 IVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLC 422 (479)
Q Consensus 343 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~ 422 (479)
|+.+++.++++++..++.+|+ ++.+.+.++++++..++..+.......+++.||+|..+..+++.. ++.+|..+.+.
T Consensus 299 p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~ 375 (492)
T PRK10459 299 PLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG 375 (492)
T ss_pred HHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH
Confidence 999999999999999988765 788999999999999999999999999999999999999999886 77888877776
Q ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 423 FVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 423 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+. +|..|+++++.+++.+......++..|
T Consensus 376 ~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred hh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 799999999999999988877766633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=5.6e-26 Score=227.02 Aligned_cols=389 Identities=17% Similarity=0.165 Sum_probs=312.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccch
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~ 103 (479)
+..+++.|.+.....+++...+.+++....++|. |++++|.++.+.++..++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 4567889999999999999999999999999995 999999999999999999777779999999999999876555444
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011678 104 IGTY-TYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLS 182 (479)
Q Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 182 (479)
.... ....+......+.+.........+. ++ .....+....+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444333333322222211 12 22334667888889999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc-ccccccccccchhhHHHHHHHHHHHhhHHHH
Q 011678 183 ACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS-SSCEKTRVFIFSDIFSCIKEFFSFALPTVVM 261 (479)
Q Consensus 183 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~ 261 (479)
.... ..-+.....+.. .......++...+..........+..++ ++..+... +..++..|+.++++.|....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL---RFSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---CchhHHHHHHHHHhhHHHHH
Confidence 4433 122222222221 3456677777777777777666665422 21111111 22468999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011678 262 FCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEA 341 (479)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 341 (479)
+....+....|+++++.+. +++++|.|+.+.++......+..+++.+..|.+++.+.++|.++.++..+++.++...++
T Consensus 226 ~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHH
Q 011678 342 VIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVL 421 (479)
Q Consensus 342 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l 421 (479)
+|..+++..+++++..++.+++ ++.+...+.++++..++.++.......+++.|+++..++.+..+. +.++.+.+++
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l 381 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH
Confidence 9999999999999999988766 566899999999999999999999999999999999999999996 8999999999
Q ss_pred HHHhCCCchHHHHHH
Q 011678 422 CFVLNLRGKGLWIGI 436 (479)
Q Consensus 422 ~~~~~~g~~g~~~~~ 436 (479)
.+. +|..|+..++
T Consensus 382 i~~--~g~~g~~~a~ 394 (480)
T COG2244 382 IPR--FGLIGAAIAT 394 (480)
T ss_pred HHh--hhhhhHHHHH
Confidence 886 7889999888
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=1.8e-21 Score=190.52 Aligned_cols=210 Identities=19% Similarity=0.241 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 011678 244 IFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (479)
Q Consensus 244 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~ 323 (479)
.++..|+++++++|.+++++.......+|++++++++ ++++++-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4568999999999999999999999999999999997 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q 011678 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (479)
+++++....+...+++++++..++...+++++..++++++|+.+.+.+|+++..++.++..+.....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-hC-CCchHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 011678 404 YVNLGAYYIVGIPLASVLCFV-LN-LRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (479)
Q Consensus 404 ~~~~~~~~~~~i~l~~~l~~~-~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
+.++++. ++|+++.+++++. ++ +|+.|+++|+.+++.+..+..+.++++++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999997 9999999999998 46 999999999999999999998888776653
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=3.3e-21 Score=190.46 Aligned_cols=207 Identities=19% Similarity=0.087 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 011678 243 DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 322 (479)
Q Consensus 243 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~ 322 (479)
+++++.|++++.++|.+++++...+....|+.++++++ ++++++++++.++..+...+..+++++..|.++|++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999986 7799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh
Q 011678 323 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 402 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 402 (479)
++++++..+.+..+++.++++..+++. +.+++.++++.|+|+.+.+.+++++..++.++..+....++++++.|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877665 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh----CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 403 AYVNLGAYYIVGIPLASVLCFVL----NLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 403 ~~~~~~~~~~~~i~l~~~l~~~~----~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
++.++++. ++++++.+++.... ++|+.|+++++.+++....+...+++++
T Consensus 161 ~~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 161 MVISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 88999999987542 4899999999999988877666555544
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=3.8e-21 Score=188.19 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChH
Q 011678 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQ 324 (479)
Q Consensus 245 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 324 (479)
+++.|++++.++|.+++++.......+|+.++++++ +++++++.+++.++.++...+..+++.+..+.++|++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356889999999999999999999999999999985 4778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHH
Q 011678 325 AAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAY 404 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 404 (479)
++++..+.++.++++++++..++...+.+++..+++.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 405 VNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 405 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
.++++. ++++++.+++.+.+++|+.|+++++.+++.+..+....++.+
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 889999999998888999999999999999988776655543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=6.4e-21 Score=188.41 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHH
Q 011678 246 SCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQA 325 (479)
Q Consensus 246 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~ 325 (479)
+..|++++.++|.+++++.......+|+.++++++ ++++++++++.++..+...+..+++++..+.+++++|++|+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 45899999999999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q 011678 326 AQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFN--SDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (479)
+++..+.+..+++.++++.+++.+++++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011678 404 YVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITV 452 (479)
Q Consensus 404 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 452 (479)
++++.+. ++++++.+++... +++|+.|+|+++.+++.+..++..+++.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 8999999998864 3789999999999999998877655443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.2e-20 Score=186.20 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChH
Q 011678 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQ 324 (479)
Q Consensus 245 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 324 (479)
++..|++++.++|.+++++........|+.+++++. |++++++++++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 457799999999999999999999999999999973 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHH
Q 011678 325 AAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAY 404 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 404 (479)
++++..+.+.+++.++++++.++...+++++..+++.|+++.+.+.+++++..++.++..+.....+++++.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 405 VNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 405 ~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
.++.+. ++++++.+++.+.+++|..|+++++.+++.+..++...+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999985 9999999999988889999999999999999988876665543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=1.6e-20 Score=186.06 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 011678 243 DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGN 322 (479)
Q Consensus 243 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~ 322 (479)
..++..|+++++++|.+++++........|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34578999999999999999999999999999999986 6789999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchh
Q 011678 323 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIG 402 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 402 (479)
+++.++..+.+..+++.++++..+++.++++++..+++.|+|+.+.+.+++++.+++.++..+.....+++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH----hCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 403 AYVNLGAYYIVGIPLASVLCFV----LNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 403 ~~~~~~~~~~~~i~l~~~l~~~----~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
++.++++. ++++++.+++... +++|..|+++++.+++.+..+...++.+++
T Consensus 164 ~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 164 MVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999986 8899999988743 358999999999999999998877666544
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.4e-16 Score=147.14 Aligned_cols=271 Identities=16% Similarity=0.196 Sum_probs=209.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHH
Q 011678 30 LSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYT 108 (479)
Q Consensus 30 ~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~ 108 (479)
+.|.+.....+++...+.+++...+++|. |++++|.++.+.++..++......|++++..+.++++..+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 35788889999999999999999999995 9999999999999999885667999999999999987432 34444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011678 109 YSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLC 188 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 188 (479)
........+.+++..+..... .... +++... .+........++..........+++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444433333322221 1333 333221 12222222225678888899999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 011678 189 FHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWS 268 (479)
Q Consensus 189 ~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~ 268 (479)
...++...+... +.+..+..++..++..+..++...+.+|+.+ .+....+++..|++++++.|..++++...+.
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776664 3458899999999999998888888876542 1112334689999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011678 269 FEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNE 317 (479)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 317 (479)
...|.++++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 225 ~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 225 SQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997 688999999999999999999999999999999875
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=4.8e-17 Score=163.78 Aligned_cols=205 Identities=15% Similarity=0.168 Sum_probs=185.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccch
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQ 103 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~ 103 (479)
++..|++++.+.|..+++....+...+|+.+.+++|++++++++.+..+.+++...+..+++++..|.++++.++||+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 46789999999999999999999999999886667999999999999999886345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 011678 104 IGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQ----DPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (479)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (479)
.++..+++......++++.+++ ..+++++..++.. +++..+.+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998875 8889999988754 4567788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011678 179 LFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (479)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 230 (479)
+++.+....++|++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998854 8999999999999999999888777764
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=2.3e-17 Score=157.53 Aligned_cols=194 Identities=21% Similarity=0.221 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011678 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (479)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (479)
|.+++++...+....++.++++++ ++++++++++.++..+...+..+++++..|.+++++|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778889999999999999999986 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHH
Q 011678 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 416 (479)
...++++.+++..++++++.++++.|++..+.+.++++++++..++.++.....+.+++.||.+.....++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999986 88899
Q ss_pred HHHHHHH-HhC-CCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 417 LASVLCF-VLN-LRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 417 l~~~l~~-~~~-~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+++.+ .++ +|..|+++++.+++.+..+...++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888877 556 779999999999999988887766654
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2e-18 Score=145.93 Aligned_cols=162 Identities=23% Similarity=0.419 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011678 257 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVL 336 (479)
Q Consensus 257 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (479)
|.+++++........+..++++++ ++++++++++.++.++...+..+++++..+.+++++|++|+|++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999995 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHH
Q 011678 337 AVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIP 416 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 416 (479)
+..++++..+++.++++++..+|+.|+|+.+.+.+++++..+..++..+.....+++++.|+++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011678 417 LASV 420 (479)
Q Consensus 417 l~~~ 420 (479)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=3e-15 Score=146.94 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=191.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchH
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~ 104 (479)
+..|++++...|.+++....++...+|+.+.+++++..+++++.+..+.+++...+..+++++..|..|+...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999999999999999999999999999986778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC----CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 011678 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG----QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL 179 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (479)
++.+++++.....+.++.++. ..+++|+...+. .+.+..+.....+++..++.++..+...+...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999875 899999998774 366677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011678 180 FLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSS 232 (479)
Q Consensus 180 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 232 (479)
+..+.++.++|++++.++... +|..|.++|+.++..+..++..+.++|+..
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999888865 999999999999999999999998887643
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1.2e-15 Score=153.08 Aligned_cols=203 Identities=16% Similarity=0.133 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch------H---HHHHH-HHHHHHHHHHHHHHHHhHHHhHHHH
Q 011678 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GE------L---TLASV-AIATSFTNVTGIIPLFGFACALETL 91 (479)
Q Consensus 23 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~------~---~~~~~-~~a~~i~~~~~~~~~~gl~~a~~~~ 91 (479)
.++.+|++++.+.|.+++++...+...+|+.++++. ++ + .+|.+ +.+.++..++ ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999884 32 1 22333 3455677776 67788999999999
Q ss_pred HHhhhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011678 92 CGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNL 170 (479)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 170 (479)
++++.++||+++.++..++...+...++++.++. ..+.++++.++..++ .+..++++.++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988865 788888888876443 35678899999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011678 171 QSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (479)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 230 (479)
++.||++.+++.+....++|++++++++..+.+|+.|+++++.+++.+..++..+..+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988755669999999999999999999988887654
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=7.6e-18 Score=142.41 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHHHHHHHHH
Q 011678 36 PMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFC 115 (479)
Q Consensus 36 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 115 (479)
|.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.++|++|++|+|++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHHHH
Q 011678 116 IAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL-CFHILL 193 (479)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 193 (479)
...+++..++ ..+.+++..+++.+++..+.+.+|+++..++.++..+.....+++++.||++.+++.+.... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999976 88999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHH
Q 011678 194 CWY 196 (479)
Q Consensus 194 ~~~ 196 (479)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=1.3e-13 Score=133.26 Aligned_cols=231 Identities=16% Similarity=0.124 Sum_probs=200.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchH
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHLGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQI 104 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~ 104 (479)
+..|++.+...|..++...+++...+|+.+-+.+.+...+.+..+..+.+++...+..++++...|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 68899999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC----CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHH
Q 011678 105 GTYTYSAMFFCIAICFPISVL-WIFMDKVLILLG----QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPL 179 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (479)
++..+.++.+..++.++.++. ..+++|+...+. .+++........+....++.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999975 899999998773 355556677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHH
Q 011678 180 FLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTV 259 (479)
Q Consensus 180 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 259 (479)
+.+.+++.++|+.+++.+... +|..|.++++.++..++..+.++..+|+..... ...++..+ ..|..+-..
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~k~~l~~~ 459 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-ILKLLLASA 459 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HHHHHHHHH
Confidence 999999999999999777754 889999999999999999999888887644322 22334344 455544444
Q ss_pred HHHHH
Q 011678 260 VMFCL 264 (479)
Q Consensus 260 ~~~~~ 264 (479)
+....
T Consensus 460 i~~~~ 464 (518)
T COG0728 460 IMAAA 464 (518)
T ss_pred HHHHH
Confidence 44433
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=5.8e-13 Score=133.64 Aligned_cols=200 Identities=14% Similarity=0.039 Sum_probs=172.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
++..|++++++.|.+.+++...+...+|+.+++++ |++++|.|+.+.++.+.+...+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 46789999999999999999999999999999996 9999999999999998764556666788888999886 56778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
+.++.+++.+.....+++++.+. ...+++++..+..++ ...+...++++++...+..........+++.||.|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 88999999999999889888865 788899988776543 356778889999988899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011678 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 229 (479)
.+++..+++++..+.+... +|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777766644 899999999999999998888877744
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.65 E-value=1.1e-12 Score=119.40 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=179.4
Q ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 011678 46 LLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISV 124 (479)
Q Consensus 46 l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (479)
..+++-..+++|. |++++|.++....+..+.......|++....+ . .++++++.++..+.......+.+.+..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889994 99999999999999998855557777777554 2 2345556666666655544444433332
Q ss_pred HHHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 011678 125 LWIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFR 204 (479)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 204 (479)
+ ...+..++ .+++. ..++....+..+.........+.+++++|.+.....+....+........+... +.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 11122233 33332 234556666778888999999999999999999999988888885555444443 348
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 011678 205 IVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKL 284 (479)
Q Consensus 205 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (479)
..+..++..+++++..++.....+++.+.+ + +.+..| .++.+.|..+.++..+.....|.++++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLRLS-------F-KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCC-------c-hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 888999999998888877766443221111 1 222334 799999999999999999999999999955 589
Q ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Q 011678 285 ETSVLSICLTISSTHY-FIPYGIGAAASTRVSN 316 (479)
Q Consensus 285 ~~~~~~~~~~i~~~~~-~~~~~l~~~~~~~~~~ 316 (479)
++|.|+++.++...+. .+..++++...|.++|
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 8999999999999886
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.62 E-value=2.8e-13 Score=132.82 Aligned_cols=199 Identities=11% Similarity=-0.005 Sum_probs=168.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
++.+|++++.+.|..++++...+...+|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.+++. +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 5778999999999999999999999999999984 79999999999999988543678999999999999995 5677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 011678 103 QIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFL 181 (479)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (479)
+.++..++.......++++.+++ .+++++++.++..++ .+.+.+++++.+++.++...+..+.......++.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 365 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYIL 365 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998888888877765 788999999887554 224677888888887777777766666667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011678 182 SACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (479)
Q Consensus 182 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 229 (479)
..+...+++++++++++.. +|..|+++++.+++.+..++..+...+
T Consensus 366 ~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 366 AEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999865 999999999999999999887765553
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.8e-12 Score=129.81 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhccccc
Q 011678 23 FVEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY 101 (479)
Q Consensus 23 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~ 101 (479)
.++.+|++++.++|...+.+...+.+.+|+.+++++ |++++|.|+.+.++.... ..+...++.+..|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 468999999999999999999999999999999996 999999999888888887 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHH
Q 011678 102 QQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLF 180 (479)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 180 (479)
++.++..++.+......+++..+. ..+++|+...+..++.. .+...+.+.++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999876 88888999877655432 267778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHH
Q 011678 181 LSACATLCFHILLCWYLVFKANFRIVGAALAIGLS 215 (479)
Q Consensus 181 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 215 (479)
..+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999955 8999999999 44
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.29 E-value=4.2e-10 Score=109.92 Aligned_cols=206 Identities=17% Similarity=0.146 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhcCCCh
Q 011678 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISST-HYFIPYGIGAAASTRVSNELGAGNP 323 (479)
Q Consensus 245 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~l~~~~~~~~~~~~g~~~~ 323 (479)
+.+.|++++++.|.++....+.....++....++++ +.++++.++++...+. -+.+..++..+..|..+|++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578899999999999999999999999999999998 5588999888887665 5567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhH
Q 011678 324 QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGA 403 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 403 (479)
+.......++........+|... ++.+.+++...+..|+++...+..+.++..+..+...........+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999998888888888754 45566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 404 YVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 404 ~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
++..... .+++++.|++.+.+++|..|++.+..+++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999996 9999999999999999999999999999999988887766543
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.26 E-value=3.8e-08 Score=97.67 Aligned_cols=420 Identities=11% Similarity=-0.031 Sum_probs=244.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH-HHHHHHHhHHHhHHHHHHhhhcccccchHHHHH
Q 011678 31 SFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNV-TGIIPLFGFACALETLCGQAYGAKQYQQIGTYT 108 (479)
Q Consensus 31 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~i~~~-~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~ 108 (479)
.+.+.-.++.+++..+.+++-..++-| ++|+.+|..+.=..+..- +.+..=.++-.|.++.-.+...+++.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 355667788899999988877666666 699999887554444332 113344567666554333321111222333333
Q ss_pred HHHHHHHHHHHHHHHHH-H-HhHHH----HHHHhCCC-hH---HHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHcC
Q 011678 109 YSAMFFCIAICFPISVL-W-IFMDK----VLILLGQD-PE---IATEACNFSISLIPALLAFAVLRP----LIHNLQSQS 174 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~~~~ 174 (479)
+....+..++++++..+ + ....+ ...+.... ++ ..+.....+.+...+...-.+... .+..+.-..
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 33333344333322222 1 11111 11111111 11 112222223333334443333333 344455555
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHh-cCCcc------chhHHHHHHHHHHHHHHHHHHHHh--ccc---ccccccccch
Q 011678 175 LILPLFLSACATLCFHILLCWYLVFK-ANFRI------VGAALAIGLSYCLNAVILALYMRY--SSS---CEKTRVFIFS 242 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~i~~~~~li~~-~~~g~------~g~a~a~~i~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~ 242 (479)
|.+.-........+++..+....... .+++. .-+.++..++++...+........ ... .+....+...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555555444443221 11111 122445555665554433222211 111 1111111111
Q ss_pred ---hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Q 011678 243 ---DIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL--LPNSKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSN 316 (479)
Q Consensus 243 ---~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~~~~~~ 316 (479)
.+...-+++++.......+++.-.+-..-|.+++.. +. +.++-|.|++++++-++.. .+...+........++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 011124688888888889998888889999999888 65 4778899999999977664 4447788888888887
Q ss_pred hhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011678 317 ELGAGNP---------QAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQS 387 (479)
Q Consensus 317 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 387 (479)
...+++. ++..+.....++....+++.+..+....++.+..++.+++=.-......++.++...++.+++.
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7665433 3455667777777777777776666677777777776543223346889999999999999999
Q ss_pred HHHHHHhccCccchhHHHH---HHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 388 VLSGVARGTGWQHIGAYVN---LGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 388 ~~~~~l~~~g~~~~~~~~~---~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+...+.++....+.....+ .+.. ++.+..++++... ++|..|..+|..+.+..+.+....+.++
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988776443322 2332 5567788888886 7999999999999999999988776644
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=1.7e-06 Score=80.43 Aligned_cols=411 Identities=12% Similarity=-0.031 Sum_probs=232.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc-
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-LGELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ- 102 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~- 102 (479)
+......+.+.-.+..+++..+.+++-..++-| ++++.+|..+.-..+.+=. ..-++--..+......|..+.|
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT----iLFlsREair~A~l~~gs~~~d~ 80 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST----ILFLSREAIRLAELRIGSEPADT 80 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH----HHHhhHHHHHHHhccCCCCCCcc
Confidence 355566777778888888888888765555555 6999999887655554421 1112222223333344443333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 011678 103 --QIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPE--IATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (479)
Q Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (479)
+..+..+.+..+..+..+++.-+ .+.+....++ ..+.-.....+...+...-.+...+.-..|...+.+.
T Consensus 81 ~te~~n~~wlS~~L~~~i~~~~i~~------wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~ 154 (530)
T KOG2864|consen 81 WTEFINLLWLSVPLQTAINVACIYF------WLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQL 154 (530)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH------HHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333344444444444333322 1122111111 1111222233444444444555555555566666666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHh-cCCccchhHHHHHHHHHHHHHHHHHH-HHhcccccc---------cccc------c
Q 011678 179 LFLSACATLCFHILL-CWYLVFK-ANFRIVGAALAIGLSYCLNAVILALY-MRYSSSCEK---------TRVF------I 240 (479)
Q Consensus 179 ~~~~~~~~~~~~i~~-~~~li~~-~~~g~~g~a~a~~i~~~~~~~~~~~~-~~~~~~~~~---------~~~~------~ 240 (479)
-.....+..++.-++ -.+++.+ .++++.--|+|.....+.-.+...++ ++.++..+. ..++ .
T Consensus 155 ~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~ 234 (530)
T KOG2864|consen 155 RAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERG 234 (530)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcc
Confidence 666666666666333 3333333 34555566666665555555533333 333331100 0000 0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhh
Q 011678 241 FSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN-SKLETSVLSICLTISSTHY-FIPYGIGAAASTRVSNEL 318 (479)
Q Consensus 241 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~~~~~~~~ 318 (479)
...+++..+-..+ ...+.+.-.+-..-+..+++...- +-.+-|.|.++++.-++.. ++...+........++..
T Consensus 235 ~ffd~d~~~~~~s----~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~l 310 (530)
T KOG2864|consen 235 IFFDNDLLKLTKS----FTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLL 310 (530)
T ss_pred ccccHHHHHHHHH----HHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHh
Confidence 1133344444444 444444444445556666553320 1224478888888765544 444777777777777777
Q ss_pred cCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011678 319 GAGNPQAAQLA---ACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARG 395 (479)
Q Consensus 319 g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 395 (479)
.+++.|+.++. ..+.++....+++.+..+....++.+..++++++=........++++++..++.+++.+...+.++
T Consensus 311 s~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A 390 (530)
T KOG2864|consen 311 SRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFA 390 (530)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 77776666554 455556666666555555556677788887665422334668999999999999999999999998
Q ss_pred cCccchhH---HHHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011678 396 TGWQHIGA---YVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITV 452 (479)
Q Consensus 396 ~g~~~~~~---~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 452 (479)
.+..+..- +...+.. ++.+.++|++..+ +|..|...|..+.+.++.+....+.+
T Consensus 391 ~~t~~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 391 VATSRQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred hccHHHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665332 2223333 5567889999998 78899999999998888887765554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.00 E-value=3.4e-06 Score=75.15 Aligned_cols=316 Identities=12% Similarity=0.020 Sum_probs=187.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhccccc
Q 011678 25 EELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-L-GE-LTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY 101 (479)
Q Consensus 25 ~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-l-g~-~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~ 101 (479)
.....+.++-+|+.++.+...+...+-+..++| - .+ +.+++|+.+..+.-++ ..+...+-+....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 456688899999999999999998888888887 3 33 5689999999999887 666666655544333 3332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHHH-HhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 011678 102 QQIGTYTYSAMFFCIAICFPISVL-W-IFMDKVLI-LLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (479)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (479)
++.+..... ...+.+......++ + .+...+++ .++.+|++.+.+...+.++.+.-++.++...+++++.-++++..
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 222222222 11222221121222 1 23333333 45779999999999999999999999999999999987777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCccchhHHHHHHHHHHHHH-HHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 011678 179 LFLSACATLCFHILLCWYLVFK---ANFRIVGAALAIGLSYCLNAV-ILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSF 254 (479)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~li~~---~~~g~~g~a~a~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (479)
....++...+..+++..+++.. +.-++.--..+...+..+-+- +..-++..-...........+.+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 6666655555555555555533 111111111222222222221 112222111111111122223344688999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHH-----
Q 011678 255 ALPTVVMFCLEWWSFEILILLSGLLPNS----KLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQA----- 325 (479)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~----- 325 (479)
.+|.+.......++-.+.+.++++..+| ++++++..+.+......+...+-+ .+..|..-+.=.+++..+
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~v 319 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNPV 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCch
Confidence 9999999999999999999999994434 366777766666666555554442 233343322111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011678 326 AQLAACVVMVLAVTEAVIVGTIL 348 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (479)
.+...++....+..+++..+..+
T Consensus 320 ~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 320 TQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 23356676767777776665554
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.62 E-value=9.4e-06 Score=80.85 Aligned_cols=203 Identities=12% Similarity=0.030 Sum_probs=162.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhccccc--
Q 011678 27 LKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH--L-GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQY-- 101 (479)
Q Consensus 27 ~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~--l-g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~-- 101 (479)
-+++++++...+..++...+.+--|.+++.. + ..++.|.|++++++-+++.=.+...+..+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4688899999999999999999999999999 6 8899999999999999987778888888888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 011678 102 -------QQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQ 173 (479)
Q Consensus 102 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 173 (479)
++..+.+...+.+...+++++..+ ...++.++.++..+.-..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 335566777777777777777655 677777777775433333344667888899999999999999999977
Q ss_pred CChhHHH---HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011678 174 SLILPLF---LSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (479)
Q Consensus 174 ~~~~~~~---~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 230 (479)
...+... .......++-+..++++... ++|..|..+|..+...+..+....++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654443 34455556777788888876 79999999999999999999999888764
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.41 E-value=4.6e-05 Score=62.69 Aligned_cols=80 Identities=24% Similarity=0.259 Sum_probs=73.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011678 150 SISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRY 229 (479)
Q Consensus 150 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 229 (479)
+++.+++.++..+.....+.+++.||++.....+..+.++|++++++++. ++|..|+++|+.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999985 4999999999999999999999888887
Q ss_pred cc
Q 011678 230 SS 231 (479)
Q Consensus 230 ~~ 231 (479)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 53
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.25 E-value=0.00033 Score=64.28 Aligned_cols=185 Identities=21% Similarity=0.180 Sum_probs=112.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011678 255 ALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFI-PYGIGAAASTRVSNELGAGNPQAAQLAACVV 333 (479)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (479)
+......+............++.+.. |+++.|.|+....+.++...+ ..|++++..-..++...+ .+..++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~ 81 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSV 81 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence 34444555555444455555555555 488999999999999888876 478888887777765432 23333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Q 011678 334 MVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIV 413 (479)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 413 (479)
.....+..+.+.... .+...+..+ + .+ ...........++.........++++.++.+.....++... +.
T Consensus 82 ~~~~~~~~~i~~~~~-----~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (273)
T PF01943_consen 82 LFLLLIFSLIFLLIL-----LIASFFGNP-S-LS--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LL 151 (273)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHcCCc-h-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 333333222222222 222233332 2 11 11222222222577788888999999999999998888886 55
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011678 414 GIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 414 ~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
.+.+...+... ..+..+...+..++.++..+......+|
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555554 2458888899999888887777766654
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=0.00014 Score=68.05 Aligned_cols=203 Identities=10% Similarity=-0.008 Sum_probs=153.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhcccccc
Q 011678 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGHL---GELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAKQYQ 102 (479)
Q Consensus 26 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l---g~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~~~~ 102 (479)
.-++..+...-.....++.++.+--|.++++.. +-++.|.|..+.++-+++.-.+...+....-.+.+|...++++|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 445677777778888888999999999999853 55678889998888888766677778777778888887766655
Q ss_pred hHH---HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhH
Q 011678 103 QIG---TYTYSAMFFCIAICFPISVL-WIFMDKVLILLGQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILP 178 (479)
Q Consensus 103 ~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (479)
+.+ ++....+.+....|++.... ...++..+.+++.+.-....+...+++.+..+|+..++.+..++..+.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 544 45555666666666555544 66677777777654433344556789999999999999999999987665433
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhc
Q 011678 179 L---FLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYS 230 (479)
Q Consensus 179 ~---~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 230 (479)
. .....+..+..++.+++++-. +|..|..+|.++...+..+....++++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 234466677888899999987 7889999999999999988888887765
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.19 E-value=1.5e-05 Score=65.64 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011678 373 VPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITV 452 (479)
Q Consensus 373 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+++++++.++.++....++++++.||+|..+..++.+. ++++++++++.+. +|..|+++++.++++.......+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999996 9999999999775 89999999999999999998887776
Q ss_pred hc
Q 011678 453 TT 454 (479)
Q Consensus 453 ~~ 454 (479)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.01 E-value=0.0027 Score=57.43 Aligned_cols=164 Identities=15% Similarity=0.259 Sum_probs=107.9
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011678 272 LILLSGLLPNSKLETSVLSICLTISSTHYFIP-YGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFC 350 (479)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (479)
...++++.. ++++.|.|+....+..+...+. .++.+...- ..++|.++.++..+.......+..+...++.
T Consensus 7 ~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (251)
T PF13440_consen 7 FLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA-- 78 (251)
T ss_pred HHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 444555554 4889999999999888887764 444444322 2346666677776666655455444443332
Q ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhCCCch
Q 011678 351 CRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGK 430 (479)
Q Consensus 351 ~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~ 430 (479)
..+...+ ++++ ...++....+..++..........+++.+|.+.......... +..+.+...+... +.+..
T Consensus 79 --~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 149 (251)
T PF13440_consen 79 --ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLW 149 (251)
T ss_pred --HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHH
Confidence 2222233 3332 345666777788888899999999999999999999999886 5454444444443 24788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011678 431 GLWIGIMTGSAVQAIVLAIITV 452 (479)
Q Consensus 431 g~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+..++..++..+..+......+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888887776655443
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.90 E-value=0.016 Score=52.44 Aligned_cols=171 Identities=11% Similarity=0.016 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 011678 245 FSCIKEFFSFALPTVVMFCLEWWSFEILILLSGL-LPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNP 323 (479)
Q Consensus 245 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~ 323 (479)
.....+++++-+|..++.....++-.+.+--+++ ..+..+.++.|+++..+.-++..+...+-++....+.+ +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 4577899999999999999998988888877776 33334668999999999999999988887777666532 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh-hhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccch
Q 011678 324 QAAQLAACVVMVLAVTEAVIVG-TILFCCRYV-LAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHI 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 401 (479)
++ ++........++....... +..-.+++. +-+++.-|+++.+.+...+.++.+..+++++....++++.=.+++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 2222222212222211111 111123333 34666778999999999999999999999999999988885566666
Q ss_pred hHHHHHHHHHHHhHHHHHHHH
Q 011678 402 GAYVNLGAYYIVGIPLASVLC 422 (479)
Q Consensus 402 ~~~~~~~~~~~~~i~l~~~l~ 422 (479)
....++... ...+....++.
T Consensus 161 V~~aSI~~v-~~qvV~v~~ll 180 (345)
T PF07260_consen 161 VGSASIADV-IAQVVLVAILL 180 (345)
T ss_pred eehHHHHHH-HHHHHHHHHHH
Confidence 666666553 33444444444
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.59 E-value=0.061 Score=49.72 Aligned_cols=320 Identities=10% Similarity=0.054 Sum_probs=185.2
Q ss_pred HHHHHHHhHHHhHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHh
Q 011678 76 TGIIPLFGFACALETLCGQAYGAKQYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIATEACNFSISLIP 155 (479)
Q Consensus 76 ~~~~~~~gl~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 155 (479)
+...+..|+....++.+|...=+||.+++.....-...+....+.++..+ +...++++.... =...+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~y-----k~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIVY-----KILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHHH-----HHHHHH
Confidence 33557788999999999999888887777666666555555555444422 111122222211 112233
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHhccc-cc
Q 011678 156 ALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSS-CE 234 (479)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~ 234 (479)
........-+....+.+.++.+.....-.++.++.+.+...+-. .+..|..++..++..+.......+..|.-+ .+
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 34445555666677889999999989889999999888877754 589999999999999988888777766422 11
Q ss_pred ccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH------HHHHHHHHHHHHHhH-----
Q 011678 235 KTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSV------LSICLTISSTHYFIP----- 303 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~----- 303 (479)
+...++.. ..++ =....+.+.....+.+.++++-=.-++|.+..+. |-+..-...+...|.
T Consensus 217 ~i~FdFL~----~~~~----y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~ 288 (467)
T COG4267 217 RIGFDFLL----YRRK----YPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFL 288 (467)
T ss_pred ccceehhh----hhhc----chHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheee
Confidence 11111111 1111 1234456667777888888765443333222222 222111111111111
Q ss_pred HHHHHHHHHHHHHhh----cCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHH
Q 011678 304 YGIGAAASTRVSNEL----GAGN-------PQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSEL 372 (479)
Q Consensus 304 ~~l~~~~~~~~~~~~----g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 372 (479)
..+.+...+.--+.+ |.+. .++.....+....-..-+-...++.++++++.+...++-++ ..-+.
T Consensus 289 i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~l 364 (467)
T COG4267 289 ISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDL 364 (467)
T ss_pred eeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHH
Confidence 222333333222111 1222 22233334444444445556677888888999998887654 35556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHH
Q 011678 373 VPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCF 423 (479)
Q Consensus 373 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 423 (479)
..+-.++..++......-++.--..+-+..+-.+..- .+.|-.+.++...
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~ 414 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH
Confidence 6666777766666666666666667777766666664 3667777777654
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=69.84 E-value=30 Score=24.84 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011678 303 PYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVI 343 (479)
Q Consensus 303 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 343 (479)
..-++...+..+.+.+.+||++++++.-+++.+++.+-...
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555667888899999999999999988887654444
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=68.68 E-value=92 Score=28.25 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011678 300 YFIPYGIGAAASTRVSNELGAGNPQAAQLAA 330 (479)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 330 (479)
..+...++.......=+...++|+++.++.-
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~ 140 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLH 140 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHH
Confidence 3344455556666666777788888876543
No 48
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=67.08 E-value=11 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhc
Q 011678 442 VQAIVLAIITVTTNWRKQARMARERIFE 469 (479)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (479)
+.....+..++|.+.+++..+..+|+.+
T Consensus 21 vvW~iv~ieYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 21 VVWTIVYIEYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp HHHHHH------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 3333344556666666666665555554
No 49
>COG4267 Predicted membrane protein [Function unknown]
Probab=67.00 E-value=1.2e+02 Score=28.97 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Q 011678 302 IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSII 381 (479)
Q Consensus 302 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 381 (479)
+..+++....-.++.-.=+||++.+...+--+..+....+...+... ++.+++ +...... ..+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~--~si~yk~--l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQ--YSIVYKI--LACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCc--hhHHHHH--HHHHHHH
Confidence 33455555555666655566666666666665555555554444321 112222 2222222 2334445
Q ss_pred HHHHHHHHHHHHhccCccchhHHHHHHHHHHHhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Q 011678 382 MDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIIT 451 (479)
Q Consensus 382 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 451 (479)
..+...+....+.+++|.+.....-.++. +....++.++-. .+..|...+..++..+.......+.
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~I 208 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYI 208 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55566677888899999998888777774 777777777766 5899999999999888777655443
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=66.68 E-value=1.3e+02 Score=29.19 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=31.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011678 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYA 358 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 358 (479)
+.++.+++.+++.+.+.........+.....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999888888887777763
No 51
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=62.44 E-value=1.9e+02 Score=29.52 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=33.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHHHHH
Q 011678 29 KLSFLAAPMVGVTVSQYLLPAVSLMMAGHL--GELTLASVAIATSFTNVT 76 (479)
Q Consensus 29 ~~~~~~~p~~~~~~~~~l~~~i~~~~i~~l--g~~~~~~~~~a~~i~~~~ 76 (479)
.+.++..-..++++...+....-..++..+ ++..+|.+..+..+..++
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344455667778888888888777777776 566777777777776654
No 52
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=52.37 E-value=2.5e+02 Score=27.98 Aligned_cols=51 Identities=6% Similarity=-0.007 Sum_probs=33.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c--ChHHHHHHHHHHHHHHHH
Q 011678 26 ELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-L--GELTLASVAIATSFTNVT 76 (479)
Q Consensus 26 ~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-l--g~~~~~~~~~a~~i~~~~ 76 (479)
.+|+-..++.+-+.+++.......--..+... . ++...|..-....+...+
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 45677788888888888777777766666655 3 344455555555555544
No 53
>PRK01637 hypothetical protein; Reviewed
Probab=50.75 E-value=2e+02 Score=26.42 Aligned_cols=11 Identities=0% Similarity=-0.040 Sum_probs=4.8
Q ss_pred HHHHHhhcCCC
Q 011678 312 TRVSNELGAGN 322 (479)
Q Consensus 312 ~~~~~~~g~~~ 322 (479)
--+.+.++.++
T Consensus 114 ~a~N~i~~~~~ 124 (286)
T PRK01637 114 KALNTIWRSKR 124 (286)
T ss_pred HHHHHHhCCCC
Confidence 33444455443
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.60 E-value=31 Score=26.93 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011678 430 KGLWIGIMTGSAVQAIVLAIITVTTN 455 (479)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
.|+.+|...+-+...++..++.+|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444443333333344433
No 55
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=40.70 E-value=3.7e+02 Score=26.55 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011678 305 GIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTIL 348 (479)
Q Consensus 305 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (479)
.......|.+++...+.++.++-+.....-+.++..+..+...+
T Consensus 49 ~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l 92 (432)
T PF06963_consen 49 LSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLL 92 (432)
T ss_pred HHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999888877766666666666666655544443
No 56
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.04 E-value=2.1e+02 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHhCCCchHHHHHHHH
Q 011678 412 IVGIPLASVLCFVLNLRGKGLWIGIMT 438 (479)
Q Consensus 412 ~~~i~l~~~l~~~~~~g~~g~~~~~~~ 438 (479)
...+++.++-.. +|-.|..+....
T Consensus 106 ~~~lglpi~~~l---~g~~~~~~~~~~ 129 (385)
T PF03547_consen 106 TGFLGLPILQAL---FGERGVAYAIIF 129 (385)
T ss_pred chhhHHHHHHHH---hcchhhhhehHH
Confidence 444555555544 455555544433
No 57
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=38.05 E-value=1.4e+02 Score=24.95 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=19.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011678 204 RIVGAALAIGLSYCLNAVILALYMRYSS 231 (479)
Q Consensus 204 g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 231 (479)
+..|...++.+++++.+++...+.++..
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl~ 162 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNLT 162 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeecc
Confidence 4456677778888888887777766543
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=37.45 E-value=98 Score=28.96 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=29.5
Q ss_pred cCccchhHHHHHHHHHHHhHHHHHHHHHHh-CCC-------chHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 011678 396 TGWQHIGAYVNLGAYYIVGIPLASVLCFVL-NLR-------GKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (479)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~-~~g-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
....+..-..++++ ++.+|..++-+.+. +++ .+|.+++.. ..++..+..+++++|++|
T Consensus 252 ~~~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~-~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 252 NKMNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLI-VMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 33445555666665 34466666655431 111 123333333 334444556677888877
No 59
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=36.90 E-value=4e+02 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 011678 100 QYQQIGTYTYSAMFFCIAICFPISVL-WIFMDKVLI 134 (479)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 134 (479)
++++.+++++.+...+.....+..++ ....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999998887754 666667766
No 60
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.15 E-value=2.5e+02 Score=24.59 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 011678 100 QYQQIGTYTYSAMFFCIAICFPISVLWIFMDKVLILLG 137 (479)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (479)
+++.....+..++...+++-++++++..+..++.++++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 44455555556665555555555555666666666665
No 61
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=33.76 E-value=3.7e+02 Score=24.50 Aligned_cols=31 Identities=10% Similarity=-0.029 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011678 301 FIPYGIGAAASTRVSNELGAGNPQAAQLAAC 331 (479)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ 331 (479)
.+...++....+..-+...++|+++.++.-.
T Consensus 112 ~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 112 LFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 3444555566666667777888887765433
No 62
>PTZ00370 STEVOR; Provisional
Probab=33.68 E-value=72 Score=28.97 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 427 LRGKGLWIGIMTGSAVQAIVLAIITVTT 454 (479)
Q Consensus 427 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
++..|++.-.++.-.+..++++++++|+
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrr 281 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRR 281 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566776666666666666655544443
No 63
>PRK10739 putative antibiotic transporter; Provisional
Probab=32.20 E-value=3.3e+02 Score=23.47 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHH
Q 011678 311 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELV 373 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 373 (479)
.|..-..-++.+.++.|+..+++.. ....+.+++.++++.+.++|+-+.+..+.+...+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~----~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGil 79 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELL----IALLVMLVFLFAGEKILAFLNLRTETVSISGGII 79 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455555556667777777776554 4444456778889999999987765566555443
No 64
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=31.85 E-value=3.9e+02 Score=24.21 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhc
Q 011678 302 IPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAV-TEAVIVGTILFCCRYVLAYAF 359 (479)
Q Consensus 302 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 359 (479)
+...+........=++-.++|.+...+.-..+..... ....|..+..++-.+.+-.+.
T Consensus 112 ~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 112 FVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444555555566667788887777666664333 333343333333344433333
No 65
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=30.93 E-value=5.5e+02 Score=25.59 Aligned_cols=27 Identities=11% Similarity=-0.129 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAV 50 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i 50 (479)
++.+|.++|-++|..+..++..+-...
T Consensus 13 ~~~~k~~~k~~i~~~i~~~l~~i~~~~ 39 (459)
T PF10337_consen 13 RRSLKIMFKCWIAPWIALILCQIPPVA 39 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 578899999999999988877655443
No 66
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.12 E-value=1.7e+02 Score=27.60 Aligned_cols=50 Identities=20% Similarity=0.046 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh-CCC-c------hHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 011678 404 YVNLGAYYIVGIPLASVLCFVL-NLR-G------KGLWIGIMTGSAVQAIVLAIITVTTNW 456 (479)
Q Consensus 404 ~~~~~~~~~~~i~l~~~l~~~~-~~g-~------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
..++++ ++.+|+.++-+.+. |++ + +|.+ ...+..++..+..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyGMNf~~mPel~~~~gy~-~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFGVNLGGIPGGGWPFGFS-IFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhccccCCCCCcCCcchHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 445554 34457777655531 221 1 2333 3333344444555667887777
No 67
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=28.93 E-value=1.8e+02 Score=27.30 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=28.9
Q ss_pred cCccchhHHHHHHHHHHHhHHHHHHHHHH-hCCC-c------hHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 011678 396 TGWQHIGAYVNLGAYYIVGIPLASVLCFV-LNLR-G------KGLWIGIMTGSAVQAIVLAIITVTTNW 456 (479)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~~i~l~~~l~~~-~~~g-~------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
.+.....-..++++ ++.+|..++-..+ .++. + .|.+++ ....++.++..+++++|++|
T Consensus 250 ~~~N~~mk~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~~-l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 250 IEQNRIIKIFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPGA-IILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHccc
Confidence 34445555566665 4446666665543 1221 1 233333 33334444445667877777
No 68
>PRK11111 hypothetical protein; Provisional
Probab=23.48 E-value=5.1e+02 Score=22.71 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=36.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHH
Q 011678 312 TRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELV 373 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 373 (479)
|..-..-++.+.++.|+..+++. +....+.+++.++++++.++|+-+-+..+.+...+
T Consensus 28 piflslt~~~s~~~r~~ia~~a~----l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGii 85 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTAN----LSVAIILLISLFLGDFILNLFGISIDSFRIAGGIL 85 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444556666666666554 44445556778889999999987755555555443
No 69
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.82 E-value=5e+02 Score=22.44 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHHHHHHHHH
Q 011678 311 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELV 373 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 373 (479)
.|.....-++.+.++.++..+++. +++....+.+.++++.+.++|+-+-+....+...+
T Consensus 24 ipvfl~lt~~~~~~~r~~ia~~~~----l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGii 82 (201)
T TIGR00427 24 IPIFISLTEYYTAAERNKIAKKAN----ISSFIILLIFLVFGDTILKLFGISIDAFRIAGGIL 82 (201)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 355555556666666666666655 44444456777889999999987655555555443
No 70
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=22.49 E-value=7.6e+02 Score=24.42 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011678 255 ALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVM 334 (479)
Q Consensus 255 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 334 (479)
+.|.+++.+.-.++-..-.++.+..-+++.+ +.-+......|++.++...+|+.+|+.+..+.+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 6788887776656555556666655433222 3334455778999999999999999998888877766544
No 71
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=22.41 E-value=71 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 011678 434 IGIMTGSAVQAIVLAIITVT 453 (479)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~ 453 (479)
+..+++.++.++..+.+.-+
T Consensus 9 IviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHhHHHHHHHhcc
Confidence 34445556666666555544
No 72
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.09 E-value=6.9e+02 Score=23.74 Aligned_cols=24 Identities=8% Similarity=-0.231 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011678 326 AQLAACVVMVLAVTEAVIVGTILF 349 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~ 349 (479)
..+..++-++......+|......
T Consensus 121 ~~~~~r~~l~~~~~~~~pl~~~~~ 144 (340)
T PF12794_consen 121 RVQRLRRQLRWLIWVLVPLLFISI 144 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566555544443
No 73
>PF14184 YrvL: Regulatory protein YrvL
Probab=21.43 E-value=4.3e+02 Score=21.09 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 011678 109 YSAMFFCIAICFPISVLWIFMDKVLILLGQDPEIA-TEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATL 187 (479)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 187 (479)
...+.......++.+...+....+.++++.+-+.. ....-.+....++.|+..+...+...+...+..+.. ......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHH
Confidence 34444455555555555666667778776553322 222223334466778887777777766655333333 234555
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHH
Q 011678 188 CFHILLCWYLVFKANFRIVGAALAIGLS 215 (479)
Q Consensus 188 ~~~i~~~~~li~~~~~g~~g~a~a~~i~ 215 (479)
.+...+++..++.-+.=+.+..+.+..-
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is~~~e 110 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISISTLSE 110 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeCcHHH
Confidence 6777777777776444444444444333
No 74
>COG5393 Predicted membrane protein [Function unknown]
Probab=20.29 E-value=4.1e+02 Score=20.52 Aligned_cols=30 Identities=7% Similarity=-0.169 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 011678 427 LRGKGLWIGIMTGSAVQAIVLAIITVTTNW 456 (479)
Q Consensus 427 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
+-.......+++-+++..+...|.+++...
T Consensus 80 yRl~a~~a~~~vl~vl~~i~ciW~lrks~~ 109 (131)
T COG5393 80 YRLNAMIATTAVLLVLALIGCIWTLRKSRK 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666766666666665443
No 75
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.21 E-value=9e+02 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHhhhccc
Q 011678 44 QYLLPAVSLMMAGHLG-ELTLASVAIATSFTNVTGIIPLFGFACALETLCGQAYGAK 99 (479)
Q Consensus 44 ~~l~~~i~~~~i~~lg-~~~~~~~~~a~~i~~~~~~~~~~gl~~a~~~~~s~~~~~~ 99 (479)
..+-.+.|.-+.+|+| +..-.-.....+...-. ..+...+|.-....+++.+|+|
T Consensus 35 ~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~-f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 35 ELIKSFINETLIERYGLPLSDSTLDLLWSLIVSI-FFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcch
Confidence 3455666888888886 33444444444444433 5566677777788888888764
Done!