Query 011678
Match_columns 479
No_of_seqs 234 out of 2011
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 13:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011678.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011678hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 49.4 74 0.0054 27.0 35.9 25 426-450 406-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 22.7 2E+02 0.015 23.9 16.6 28 202-229 406-433 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 16.0 2.6E+02 0.019 22.4 36.2 48 28-75 7-57 (417)
4 d1lghb_ f.3.1.1 (B:) Light-har 6.4 2.2E+02 0.016 15.3 2.7 32 323-354 11-42 (43)
5 d1m56d_ f.23.8.1 (D:) Bacteria 6.2 2.2E+02 0.016 15.1 4.2 29 318-346 4-32 (42)
6 d1nkzb_ f.3.1.1 (B:) Light-har 5.8 2.3E+02 0.017 14.8 4.6 34 322-355 7-40 (41)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 5.4 3.9E+02 0.028 17.0 8.8 19 247-265 69-87 (100)
8 d2yvxa3 f.57.1.1 (A:276-448) M 4.3 6.3E+02 0.046 18.1 6.8 36 90-125 61-98 (173)
9 d1j1va_ a.4.12.2 (A:) Chromoso 4.0 3.2E+02 0.023 17.3 2.9 31 302-332 40-70 (94)
10 d3dhwa1 f.58.1.1 (A:6-208) D-m 3.8 6.5E+02 0.048 17.9 5.2 34 24-57 127-160 (203)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=49.38 E-value=74 Score=27.03 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=14.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH
Q 011678 426 NLRGKGLWIGIMTGSAVQAIVLAII 450 (479)
Q Consensus 426 ~~g~~g~~~~~~~~~~~~~~~~~~~ 450 (479)
+.|..+..+......++..+.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766666665555555544433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=2e+02 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=15.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHh
Q 011678 202 NFRIVGAALAIGLSYCLNAVILALYMRY 229 (479)
Q Consensus 202 ~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 229 (479)
..|..+..+......++..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666655555555555555544443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.99 E-value=2.6e+02 Score=22.45 Aligned_cols=48 Identities=4% Similarity=-0.169 Sum_probs=25.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c--ChHHHHHHHHHHHHHHH
Q 011678 28 KKLSFLAAPMVGVTVSQYLLPAVSLMMAGH-L--GELTLASVAIATSFTNV 75 (479)
Q Consensus 28 ~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~-l--g~~~~~~~~~a~~i~~~ 75 (479)
|+.+.++.-.++...........-..++.+ + ++.+.|....+..+...
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~ 57 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL 57 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 345566666666655555544444444443 3 45666655554444443
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=6.42 E-value=2.2e+02 Score=15.33 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011678 323 PQAAQLAACVVMVLAVTEAVIVGTILFCCRYV 354 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (479)
-++..+.+..++..-..+.+..=++.+.-.|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45567777777777776666665555554443
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.16 E-value=2.2e+02 Score=15.14 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=13.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 011678 318 LGAGNPQAAQLAACVVMVLAVTEAVIVGT 346 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (479)
.|+-|.+.-.|.+.--+++..-.++.+.+
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~ 32 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVA 32 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444443333
No 6
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.75 E-value=2.3e+02 Score=14.84 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011678 322 NPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVL 355 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 355 (479)
+-|++.+......+....+.+..=++.+...+++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888888888888877776666665553
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.37 E-value=3.9e+02 Score=17.04 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 011678 247 CIKEFFSFALPTVVMFCLE 265 (479)
Q Consensus 247 ~~~~~l~~~~p~~~~~~~~ 265 (479)
..-|+...-+|..+-....
T Consensus 69 ~~LEiiWTviP~lILi~l~ 87 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4568888888987755443
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.26 E-value=6.3e+02 Score=18.09 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHHHhhhccc--ccchHHHHHHHHHHHHHHHHHHHHHH
Q 011678 90 TLCGQAYGAK--QYQQIGTYTYSAMFFCIAICFPISVL 125 (479)
Q Consensus 90 ~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (479)
..+-|.++.+ +.++..+.+.+-+..++..+..+.++
T Consensus 61 ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 61 TLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444 56677888888888877777766643
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=4.04 E-value=3.2e+02 Score=17.29 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011678 302 IPYGIGAAASTRVSNELGAGNPQAAQLAACV 332 (479)
Q Consensus 302 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~ 332 (479)
+..=......+.+|+.+|.+|+.-+-+.+++
T Consensus 40 L~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 40 LAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 4455556677899999999999887777765
No 10
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=3.79 E-value=6.5e+02 Score=17.91 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 011678 24 VEELKKLSFLAAPMVGVTVSQYLLPAVSLMMAGH 57 (479)
Q Consensus 24 ~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~ 57 (479)
+-.+|-.+..+.|..++.........+....+..
T Consensus 127 q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~ 160 (203)
T d3dhwa1 127 QIVRKVLLPEALPGLVNAATITLITLVGYSAMGG 160 (203)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566555555555555544444
Done!