BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011679
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/421 (61%), Positives = 321/421 (76%), Gaps = 4/421 (0%)
Query: 41 IDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHE-PGPSTVSYGTSADKFD 99
+D+P D++ FAVP G+N+PQQVHITQGDY+G+ VIISW TP++ G + V Y + K
Sbjct: 7 VDMPWDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQ 66
Query: 100 FTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPPKIDPDAS 159
A GTV Y +Y Y S +IH C + LEYDTKYYY++G GD+ R+FWF TPPK PD
Sbjct: 67 KRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVP 126
Query: 160 YKFGIIGDLGQTYNSLSTLEHYMESGA--QTVLFLGDLSYADRYQFIDVGVRWDSWGRFV 217
Y FG+IGD+GQT++S +TL HY ++ A Q VLF+GDLSY++R+ D RWD+WGRF
Sbjct: 127 YVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN-RWDTWGRFS 185
Query: 218 ERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAH 277
ERS AYQPWIW+AGNHEI+Y +GE PF + +RYPTPH AS S PLWYAI+RASAH
Sbjct: 186 ERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAH 245
Query: 278 IIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAA 337
IIVLSSYS FVKY+PQ++W EL+KV+R +TPWLIVL+H P+YNS EAH+MEGE+MRA
Sbjct: 246 IIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAI 305
Query: 338 FESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQE 397
FE +FV YKVD+VF+GHVH+YERS R+SN+ YNI + C PV D+SAPVYIT+GDGGN E
Sbjct: 306 FEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSE 365
Query: 398 GLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWA 457
GLA + PQP YSAFREAS+GH +IKNRTHA + W+RN DG V DS L N+YWA
Sbjct: 366 GLASEMTQPQPSYSAFREASFGHGIFDIKNRTHAHFSWHRNQDGASVEADSLWLLNRYWA 425
Query: 458 S 458
S
Sbjct: 426 S 426
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/426 (57%), Positives = 312/426 (73%), Gaps = 3/426 (0%)
Query: 33 FIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYG 92
F+R + D+PLD++ F VP G+N+PQQVHITQGD G+A+IISWVT EPG S V Y
Sbjct: 1 FVRKTNKNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYW 60
Query: 93 TSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPP 152
+ + A+G ++ Y F+ Y SG+IH + L+Y+TKYYY++G +++R F F TPP
Sbjct: 61 SEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPP 120
Query: 153 KIDPDASYKFGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRW 210
+ D Y FG+IGDLGQ+++S +TL HY S QTVLF+GDLSYADRY D VRW
Sbjct: 121 QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRW 179
Query: 211 DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYA 270
D+WGRF ERS AYQPWIW+AGNHEIE+ + E PFK + +RY P+ AS+S+SP WY+
Sbjct: 180 DTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 239
Query: 271 IRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME 330
I+RASAHIIVLSSYS + + TPQ+ WL++EL+KV R +TPWLIVLMH P+YNS HFME
Sbjct: 240 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFME 299
Query: 331 GESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITV 390
GE+MR FE+WFV+YKVDVVFAGHVHAYERS R+SN+ Y I+ G C PV D+SAPVYIT+
Sbjct: 300 GEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITI 359
Query: 391 GDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFI 450
GD GN + PQP+YSAFREAS+GH +IKNRTHA + WNRN DG V DS
Sbjct: 360 GDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVW 419
Query: 451 LHNQYW 456
N++W
Sbjct: 420 FFNRHW 425
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/417 (58%), Positives = 309/417 (74%), Gaps = 3/417 (0%)
Query: 42 DIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFT 101
D+PLD++ F VP G+N+PQQVHITQGD G+A+IISWVT EPG S V Y + +
Sbjct: 4 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 63
Query: 102 AEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPPKIDPDASYK 161
A+G ++ Y F+ Y SG+IH + L+Y+TKYYY++G +++R F F TPP+ D Y
Sbjct: 64 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 123
Query: 162 FGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVER 219
FG+IGDLGQ+++S +TL HY S QTVLF+GDLSYADRY D VRWD+WGRF ER
Sbjct: 124 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 182
Query: 220 SAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHII 279
S AYQPWIW+AGNHEIE+ + E PFK + +RY P+ AS+S+SP WY+I+RASAHII
Sbjct: 183 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 242
Query: 280 VLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFE 339
VLSSYS + + TPQ+ WL++EL+KV R +TPWLIVLMH P+YNS HFMEGE+MR FE
Sbjct: 243 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 302
Query: 340 SWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGL 399
+WFV+YKVDVVFAGHVHAYERS R+SN+ Y I++G C PV D+SAPVYIT+GD GN +
Sbjct: 303 AWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVI 362
Query: 400 AGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYW 456
PQP+YSAFREAS+GH +IKNRTHA + WNRN DG V DS N++W
Sbjct: 363 DSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 419
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/417 (58%), Positives = 309/417 (74%), Gaps = 3/417 (0%)
Query: 42 DIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFT 101
D+PLD++ F VP G+N+PQQVHITQGD G+A+IISWVT EPG S V Y + +
Sbjct: 2 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 61
Query: 102 AEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPPKIDPDASYK 161
A+G ++ Y F+ Y SG+IH + L+Y+TKYYY++G +++R F F TPP+ D Y
Sbjct: 62 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 121
Query: 162 FGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVER 219
FG+IGDLGQ+++S +TL HY S QTVLF+GDLSYADRY D VRWD+WGRF ER
Sbjct: 122 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 180
Query: 220 SAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHII 279
S AYQPWIW+AGNHEIE+ + E PFK + +RY P+ AS+S+SP WY+I+RASAHII
Sbjct: 181 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 240
Query: 280 VLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFE 339
VLSSYS + + TPQ+ WL++EL+KV R +TPWLIVLMH P+YNS HFMEGE+MR FE
Sbjct: 241 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 300
Query: 340 SWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGL 399
+WFV+YKVDVVFAGHVHAYERS R+SN+ Y I++G C PV D+SAPVYIT+GD GN +
Sbjct: 301 AWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVI 360
Query: 400 AGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYW 456
PQP+YSAFREAS+GH +IKNRTHA + WNRN DG V DS N++W
Sbjct: 361 DSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 417
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 22/105 (20%)
Query: 59 PQQVHITQGDYDGKAVIISWVTPHEPGPSTVSY------GTSADKFDFTAEGTVNNYTFY 112
P+ V + + K +I++W P E Y +A+ D+ E V N
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR--- 165
Query: 113 KYKSGYIHQCLVDGLEYDTKYYYKI------GSGDSSREFWFQTP 151
HQ + L DT YY+KI G G S F+TP
Sbjct: 166 -----LTHQ--IQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
>pdb|2A3D|A Chain A, Solution Structure Of A De Novo Designed Single Chain
Three- Helix Bundle (A3d)
Length = 73
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 212 SWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAI 271
SW F +R AA + + + G E E + E+ F+S L Y +P A+
Sbjct: 3 SWAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAY------KGKGNPEVEAL 56
Query: 272 RRASAHI 278
R+ +A I
Sbjct: 57 RKEAAAI 63
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 22/112 (19%)
Query: 59 PQQVHITQGDYDGKAVIISWVTPHEPGPSTVSY------GTSADKFDFTAEGTVNNYTFY 112
P+ V + + K +I++W P E Y +A+ D+ E V N
Sbjct: 22 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR--- 78
Query: 113 KYKSGYIHQCLVDGLEYDTKYYYKI------GSGDSSREFWFQTPPKIDPDA 158
HQ + L DT YY+KI G G S F+TP P +
Sbjct: 79 -----LTHQ--IQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPSS 123
>pdb|4EGD|A Chain A, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
pdb|4EGD|B Chain B, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
Length = 260
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 348 DVVFAGHVHAYERSYRISNLHYNISS-GDCFPVPDKSAPVYITVGDG 393
D+ + +V +Y Y+++N YN+ + +P K AP + GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|4IFD|F Chain F, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 250
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 43 IPLDNEAFAVPKGHNSPQQVHITQG---DYDGKAVIISWVTPHEPGPSTVSYGTSADKFD 99
+P PKG+ S Q++ + G + +G A++ + H+ + YG + +
Sbjct: 27 VPEKKSTDLTPKGNESEQELSLHTGFIENCNGSALVEARSLGHQTSLISAVYGPRSIRGS 86
Query: 100 FTAEGTVN----NYTFYKYKSGYIHQ 121
FT++GT++ N KY + + +
Sbjct: 87 FTSQGTISIQLKNGLLEKYNTNELKE 112
>pdb|4EG9|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of Se-Methionine
Hypothetical Protein Saouhsc_02783 From Staphylococcus
Aureus
Length = 260
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 348 DVVFAGHVHAYERSYRISNLHYNISS-GDCFPVPDKSAPVYITVGDG 393
D+ + +V +Y Y+++N YN+ + +P K AP + GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 36/253 (14%)
Query: 156 PDASYKFGIIGDLGQTYNSLSTLEHYMESG---AQTVLFLGD---LSYADRYQFIDVGVR 209
P ++ +F +GD G N+ M + A+TV +G +S D + F V
Sbjct: 3 PASTLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDA 62
Query: 210 WDSWGR------FVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHR--YPTPHLAS 261
D + F +R+ PW AGNH +++ + + + R +P+P+
Sbjct: 63 NDKRFQETFEDVFSDRALRNIPWYVLAGNH--DHLGNVSAQIAYSKISKRWNFPSPYYRL 120
Query: 262 KSSSP---LWYAIRRASAHIIVLSSYSPFVKYTP-----------QWEWLREELKKVDRE 307
+ P + AI +++ + FV P Q WL+++L
Sbjct: 121 RFKVPRSNITVAIFMLDT-VMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAA--- 176
Query: 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNL 367
K +++V H PI++ A + Y V GH H + + +
Sbjct: 177 KEDYVLVAGHYPIWSI--AEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGV 234
Query: 368 HYNISSGDCFPVP 380
Y +S F P
Sbjct: 235 GYVLSGAGNFMDP 247
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 93/256 (36%), Gaps = 42/256 (16%)
Query: 156 PDASYKFGIIGDLGQTYNSLSTLEHYMESG---AQTVLFLGD---LSYADRYQFIDVGVR 209
P ++ +F +GD G N+ M + A+TV +G +S D + F V
Sbjct: 24 PASTLRFVAVGDWGGVPNAPFHTAREMANAKEIARTVQIMGADFIMSLGDNFYFTGVHDA 83
Query: 210 WDSWGR------FVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLH-----RYPTPH 258
D + F +R+ PW AGNH+ ++G V +Y +P+P+
Sbjct: 84 NDKRFQETFEDVFSDRALRNIPWYVLAGNHD-----HLGNVSAQIAYSKISKRWNFPSPY 138
Query: 259 LASKSSSP---LWYAIRRASAHIIVLSSYSPFVKYTP-----------QWEWLREELKKV 304
+ P + AI +++ + FV P Q WL+++L
Sbjct: 139 YRLRFKVPRSNITVAIFMLDT-VMLCGNSDDFVSQQPEMPRDLGVARTQLSWLKKQLAAA 197
Query: 305 DREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRI 364
K +++V H PI++ A + Y V GH H +
Sbjct: 198 ---KEDYVLVAGHYPIWSI--AEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDE 252
Query: 365 SNLHYNISSGDCFPVP 380
+ + Y +S F P
Sbjct: 253 NGVGYVLSGAGNFMDP 268
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 27 AGITSKFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGP 86
A + +K I++E S ++ + K NSP +T GDY + +II+ + + P
Sbjct: 17 ASLLTKRIQSEVIS-----HKDSTTITKNDNSP----VTTGDYAAQTIIINAIKSNFPDD 67
Query: 87 STVSYGTSADKFDFTAEGTVN 107
V +S+ D G +N
Sbjct: 68 KVVGEESSSGLSDAFVSGILN 88
>pdb|4AT6|A Chain A, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|C Chain C, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|E Chain E, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|G Chain G, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|H Chain H, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|J Chain J, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|M Chain M, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|O Chain O, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 217
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 82 HEPGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSGD 141
+PGP V+ G S K TA G Y+F Y ++ Q GLE+ Y G+GD
Sbjct: 5 QQPGPELVTPGASV-KMSCTASG----YSFSSYNIHWVKQTPGQGLEWIGVIY--PGNGD 57
Query: 142 SSREFWFQTPPKIDPDAS 159
+S F+ + D S
Sbjct: 58 TSYNQKFRDKATLTADKS 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,397,380
Number of Sequences: 62578
Number of extensions: 767783
Number of successful extensions: 1547
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 15
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)