Query 011679
Match_columns 479
No_of_seqs 436 out of 2968
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 3.9E-78 8.4E-83 589.0 41.5 424 24-461 10-445 (452)
2 PLN02533 probable purple acid 100.0 4.4E-75 9.6E-80 589.3 48.1 406 25-457 14-422 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 3.2E-46 6.9E-51 365.6 31.5 285 157-453 2-294 (294)
4 COG3540 PhoD Phosphodiesterase 100.0 6.2E-39 1.3E-43 310.8 17.2 291 63-360 41-420 (522)
5 PTZ00422 glideosome-associated 100.0 3.5E-36 7.5E-41 294.9 27.8 259 157-454 24-330 (394)
6 cd07378 MPP_ACP5 Homo sapiens 100.0 1.5E-33 3.4E-38 273.4 24.5 247 160-441 1-277 (277)
7 PF09423 PhoD: PhoD-like phosp 100.0 1.6E-33 3.6E-38 291.0 23.6 288 67-362 5-381 (453)
8 KOG2679 Purple (tartrate-resis 100.0 5.5E-30 1.2E-34 231.2 19.4 263 156-454 40-330 (336)
9 cd07395 MPP_CSTP1 Homo sapiens 100.0 6.1E-27 1.3E-31 225.2 22.1 229 158-436 3-260 (262)
10 cd07402 MPP_GpdQ Enterobacter 99.9 9.4E-24 2E-28 200.5 19.0 215 161-426 1-236 (240)
11 cd07396 MPP_Nbla03831 Homo sap 99.9 5.4E-23 1.2E-27 198.0 18.6 196 160-394 1-245 (267)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.5E-21 3.2E-26 186.4 18.0 189 162-364 2-216 (256)
13 PRK11148 cyclic 3',5'-adenosin 99.9 6.4E-21 1.4E-25 184.4 22.5 234 148-437 5-260 (275)
14 cd07399 MPP_YvnB Bacillus subt 99.8 6.1E-20 1.3E-24 170.6 15.2 150 160-363 1-166 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 2.7E-18 5.8E-23 168.2 13.7 195 164-362 42-265 (296)
16 PF00149 Metallophos: Calcineu 99.7 2.9E-18 6.4E-23 153.1 6.3 189 160-358 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 7.1E-17 1.5E-21 153.4 13.0 169 177-361 36-231 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.7 2.8E-16 6.1E-21 148.0 13.3 176 162-365 1-212 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.7 1.1E-15 2.4E-20 140.7 15.5 150 159-362 2-180 (199)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.9E-15 4E-20 137.7 14.4 167 162-359 1-174 (188)
21 TIGR03767 P_acnes_RR metalloph 99.6 4.2E-15 9.1E-20 148.6 16.3 94 265-361 290-395 (496)
22 TIGR03729 acc_ester putative p 99.6 8.2E-15 1.8E-19 138.9 13.9 176 161-359 1-222 (239)
23 cd07385 MPP_YkuE_C Bacillus su 99.6 2.6E-14 5.6E-19 134.1 12.4 198 159-395 1-206 (223)
24 cd07400 MPP_YydB Bacillus subt 99.5 7.9E-14 1.7E-18 121.4 12.5 116 162-361 1-128 (144)
25 COG1409 Icc Predicted phosphoh 99.5 1.5E-13 3.2E-18 134.5 15.1 179 160-358 1-193 (301)
26 cd07388 MPP_Tt1561 Thermus the 99.5 5.4E-13 1.2E-17 123.6 16.7 177 158-356 3-189 (224)
27 cd07389 MPP_PhoD Bacillus subt 99.5 2.3E-13 4.9E-18 128.1 11.0 163 161-361 1-207 (228)
28 cd07404 MPP_MS158 Microscilla 99.5 3E-13 6.6E-18 120.7 11.1 144 162-359 1-150 (166)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.5 3.9E-13 8.4E-18 125.9 11.9 186 161-360 1-203 (223)
30 PRK11340 phosphodiesterase Yae 99.5 2.1E-12 4.6E-17 124.4 17.3 193 158-394 48-253 (271)
31 PF14008 Metallophos_C: Iron/z 99.5 1.6E-13 3.5E-18 100.4 6.6 62 383-449 1-62 (62)
32 TIGR03768 RPA4764 metallophosp 99.4 6E-12 1.3E-16 124.8 15.2 91 266-357 292-410 (492)
33 KOG1432 Predicted DNA repair e 99.4 6.2E-11 1.3E-15 112.0 19.6 194 157-360 51-313 (379)
34 cd00838 MPP_superfamily metall 99.3 1.6E-11 3.6E-16 103.9 11.9 116 163-362 1-119 (131)
35 PF12850 Metallophos_2: Calcin 99.2 7.2E-11 1.6E-15 103.9 12.1 154 160-427 1-155 (156)
36 cd07379 MPP_239FB Homo sapiens 99.2 1.1E-10 2.3E-15 100.4 10.2 117 161-359 1-117 (135)
37 COG1408 Predicted phosphohydro 99.2 4.7E-10 1E-14 107.8 13.7 85 147-237 32-119 (284)
38 cd07397 MPP_DevT Myxococcus xa 99.1 2.2E-09 4.8E-14 99.8 14.6 64 160-237 1-64 (238)
39 cd08166 MPP_Cdc1_like_1 unchar 99.1 7.8E-10 1.7E-14 99.5 9.3 107 185-362 42-151 (195)
40 PRK05340 UDP-2,3-diacylglucosa 99.0 1.4E-09 3.1E-14 103.0 10.0 76 160-236 1-83 (241)
41 COG2129 Predicted phosphoester 99.0 1.9E-08 4.2E-13 90.8 15.6 176 159-361 3-190 (226)
42 cd00841 MPP_YfcE Escherichia c 99.0 4.4E-09 9.6E-14 92.6 10.3 57 161-236 1-59 (155)
43 cd07403 MPP_TTHA0053 Thermus t 98.9 4.5E-09 9.7E-14 89.5 8.7 49 312-361 58-106 (129)
44 PF14582 Metallophos_3: Metall 98.9 1.5E-08 3.2E-13 91.1 12.1 180 159-359 5-219 (255)
45 cd07384 MPP_Cdc1_like Saccharo 98.9 4.4E-09 9.5E-14 94.0 8.3 50 185-237 45-101 (171)
46 cd08165 MPP_MPPE1 human MPPE1 98.9 1.5E-08 3.2E-13 89.2 11.4 50 184-236 37-89 (156)
47 cd07394 MPP_Vps29 Homo sapiens 98.9 4E-07 8.7E-12 81.9 20.7 60 161-235 1-64 (178)
48 KOG3770 Acid sphingomyelinase 98.9 3.4E-08 7.5E-13 100.6 14.5 178 176-360 199-406 (577)
49 TIGR01854 lipid_A_lpxH UDP-2,3 98.9 6.6E-08 1.4E-12 91.1 15.3 73 163-236 2-81 (231)
50 TIGR00040 yfcE phosphoesterase 98.9 4E-08 8.7E-13 86.8 13.0 61 160-235 1-63 (158)
51 cd00845 MPP_UshA_N_like Escher 98.8 8.7E-08 1.9E-12 91.5 12.8 175 160-360 1-208 (252)
52 PRK09453 phosphodiesterase; Pr 98.8 4.4E-07 9.4E-12 82.2 16.6 74 160-236 1-76 (182)
53 cd08164 MPP_Ted1 Saccharomyces 98.8 1.8E-08 3.9E-13 90.6 7.1 57 177-237 35-112 (193)
54 TIGR00583 mre11 DNA repair pro 98.7 3E-06 6.5E-11 85.6 23.4 43 158-200 2-57 (405)
55 COG1768 Predicted phosphohydro 98.7 4.3E-07 9.4E-12 78.3 12.8 48 307-362 156-203 (230)
56 cd07398 MPP_YbbF-LpxH Escheric 98.7 1.2E-07 2.7E-12 88.3 9.9 75 163-237 1-83 (217)
57 cd07406 MPP_CG11883_N Drosophi 98.6 7.5E-07 1.6E-11 85.3 15.0 174 160-359 1-208 (257)
58 cd07410 MPP_CpdB_N Escherichia 98.6 9.4E-07 2E-11 85.6 14.4 185 160-359 1-231 (277)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.5 2.3E-06 4.9E-11 81.6 14.2 184 162-363 1-234 (262)
60 COG0420 SbcD DNA repair exonuc 98.5 8.9E-07 1.9E-11 90.2 11.7 73 160-236 1-88 (390)
61 PHA02546 47 endonuclease subun 98.4 2.9E-06 6.3E-11 84.5 13.8 74 160-236 1-89 (340)
62 cd07412 MPP_YhcR_N Bacillus su 98.4 5.6E-06 1.2E-10 80.6 13.9 92 267-360 138-243 (288)
63 cd07411 MPP_SoxB_N Thermus the 98.4 3.1E-06 6.7E-11 81.4 11.6 154 178-358 42-219 (264)
64 cd07408 MPP_SA0022_N Staphyloc 98.4 4.5E-06 9.8E-11 79.9 12.1 182 160-360 1-215 (257)
65 cd07382 MPP_DR1281 Deinococcus 98.3 4.2E-05 9E-10 72.6 16.7 190 161-396 1-201 (255)
66 TIGR00282 metallophosphoestera 98.3 6.5E-05 1.4E-09 71.4 17.8 195 160-397 1-205 (266)
67 COG0622 Predicted phosphoester 98.3 4.9E-05 1.1E-09 67.5 15.7 63 160-236 2-65 (172)
68 cd07409 MPP_CD73_N CD73 ecto-5 98.3 1.3E-05 2.8E-10 77.8 12.9 174 160-359 1-219 (281)
69 PRK04036 DNA polymerase II sma 98.2 1.8E-05 3.8E-10 82.9 13.1 80 157-236 241-343 (504)
70 TIGR00619 sbcd exonuclease Sbc 98.2 3.7E-06 8E-11 80.2 7.4 73 160-236 1-88 (253)
71 KOG3662 Cell division control 98.2 8.8E-06 1.9E-10 80.6 9.8 119 157-289 46-186 (410)
72 PRK09419 bifunctional 2',3'-cy 98.2 3.1E-05 6.7E-10 89.3 15.2 189 158-359 659-883 (1163)
73 cd07407 MPP_YHR202W_N Saccharo 98.1 0.00017 3.7E-09 69.7 17.9 184 158-358 4-231 (282)
74 cd07405 MPP_UshA_N Escherichia 98.1 3.1E-05 6.7E-10 75.2 11.9 187 160-359 1-222 (285)
75 COG0737 UshA 5'-nucleotidase/2 98.1 6.4E-05 1.4E-09 79.5 14.9 188 155-358 22-247 (517)
76 cd07425 MPP_Shelphs Shewanella 98.1 5.3E-06 1.1E-10 76.6 5.2 66 163-236 1-80 (208)
77 PRK10966 exonuclease subunit S 98.0 1.3E-05 2.7E-10 81.7 8.0 73 160-236 1-87 (407)
78 COG2908 Uncharacterized protei 98.0 1.7E-05 3.6E-10 72.8 6.6 68 164-236 2-80 (237)
79 cd07380 MPP_CWF19_N Schizosacc 97.9 3.5E-05 7.6E-10 66.9 6.6 64 163-234 1-68 (150)
80 PRK09558 ushA bifunctional UDP 97.8 0.00015 3.3E-09 77.2 12.6 187 157-359 32-258 (551)
81 cd08162 MPP_PhoA_N Synechococc 97.8 0.00025 5.5E-09 69.7 11.9 39 307-359 206-245 (313)
82 TIGR01530 nadN NAD pyrophospha 97.7 0.00036 7.7E-09 74.2 13.0 145 186-359 50-219 (550)
83 KOG2863 RNA lariat debranching 97.7 0.00026 5.6E-09 68.0 10.4 176 160-357 1-229 (456)
84 cd07391 MPP_PF1019 Pyrococcus 97.6 8.6E-05 1.9E-09 66.5 5.5 49 184-236 40-88 (172)
85 PRK11907 bifunctional 2',3'-cy 97.6 0.0011 2.4E-08 72.6 14.0 197 150-358 106-354 (814)
86 PHA02239 putative protein phos 97.6 0.00016 3.5E-09 67.9 6.5 70 160-236 1-73 (235)
87 PRK00166 apaH diadenosine tetr 97.3 0.00034 7.3E-09 67.3 5.3 67 160-236 1-69 (275)
88 COG1692 Calcineurin-like phosp 97.2 0.046 1E-06 50.4 17.9 193 160-395 1-202 (266)
89 cd07423 MPP_PrpE Bacillus subt 97.2 0.0004 8.7E-09 65.5 5.0 69 160-236 1-80 (234)
90 PRK09418 bifunctional 2',3'-cy 97.2 0.01 2.2E-07 65.1 16.2 47 307-359 243-290 (780)
91 TIGR00024 SbcD_rel_arch putati 97.2 0.00095 2.1E-08 62.3 6.6 70 160-236 15-102 (225)
92 PRK09419 bifunctional 2',3'-cy 97.1 0.0029 6.4E-08 73.3 11.9 48 307-359 233-281 (1163)
93 cd07424 MPP_PrpA_PrpB PrpA and 97.1 0.00061 1.3E-08 63.0 5.0 64 161-236 2-67 (207)
94 PRK13625 bis(5'-nucleosyl)-tet 97.1 0.00072 1.6E-08 64.2 5.2 69 160-236 1-79 (245)
95 cd07386 MPP_DNA_pol_II_small_a 97.0 0.0011 2.4E-08 62.9 5.8 74 163-236 2-94 (243)
96 TIGR01390 CycNucDiestase 2',3' 97.0 0.0075 1.6E-07 65.0 12.6 46 307-358 194-240 (626)
97 COG4186 Predicted phosphoester 96.9 0.014 3.1E-07 49.7 10.9 65 161-235 5-85 (186)
98 cd07381 MPP_CapA CapA and rela 96.9 0.019 4.1E-07 54.3 13.2 62 295-362 162-223 (239)
99 cd07413 MPP_PA3087 Pseudomonas 96.9 0.0014 3E-08 61.3 4.9 67 162-236 1-76 (222)
100 PRK09968 serine/threonine-spec 96.8 0.0015 3.2E-08 60.8 4.7 65 160-236 15-81 (218)
101 PRK09420 cpdB bifunctional 2', 96.8 0.019 4.1E-07 62.2 13.7 46 307-358 217-263 (649)
102 cd07387 MPP_PolD2_C PolD2 (DNA 96.8 0.021 4.6E-07 54.1 12.3 176 162-361 2-218 (257)
103 cd07390 MPP_AQ1575 Aquifex aeo 96.8 0.003 6.6E-08 56.2 6.3 41 185-236 42-82 (168)
104 cd07421 MPP_Rhilphs Rhilph pho 96.7 0.0032 6.8E-08 60.4 5.9 68 161-236 3-80 (304)
105 PRK11439 pphA serine/threonine 96.7 0.0023 4.9E-08 59.7 4.8 65 160-236 17-83 (218)
106 smart00854 PGA_cap Bacterial c 96.6 0.038 8.3E-07 52.2 12.5 60 297-362 162-221 (239)
107 cd07422 MPP_ApaH Escherichia c 96.5 0.0033 7.2E-08 59.8 4.9 64 163-236 2-67 (257)
108 COG1407 Predicted ICC-like pho 96.5 0.0069 1.5E-07 56.0 6.8 74 159-236 19-110 (235)
109 cd00144 MPP_PPP_family phospho 96.3 0.0061 1.3E-07 56.9 5.4 65 164-236 2-68 (225)
110 TIGR00668 apaH bis(5'-nucleosy 96.1 0.0082 1.8E-07 57.4 4.9 67 160-236 1-69 (279)
111 PF00041 fn3: Fibronectin type 96.0 0.04 8.7E-07 42.2 8.0 70 58-139 2-75 (85)
112 PF09587 PGA_cap: Bacterial ca 96.0 0.19 4.2E-06 47.7 14.1 65 293-363 169-233 (250)
113 KOG2310 DNA repair exonuclease 95.9 0.025 5.4E-07 57.6 7.7 45 157-201 11-68 (646)
114 PF13277 YmdB: YmdB-like prote 95.7 0.23 5E-06 46.5 12.5 191 163-396 1-199 (253)
115 KOG3325 Membrane coat complex 95.4 0.18 3.9E-06 42.7 9.7 85 337-453 98-182 (183)
116 cd07420 MPP_RdgC Drosophila me 94.8 0.043 9.3E-07 53.9 5.2 65 161-236 52-123 (321)
117 COG5555 Cytolysin, a secreted 94.8 0.023 5E-07 53.2 3.0 176 186-362 127-338 (392)
118 cd07416 MPP_PP2B PP2B, metallo 94.7 0.049 1.1E-06 53.3 5.3 68 161-236 44-114 (305)
119 smart00156 PP2Ac Protein phosp 94.3 0.072 1.6E-06 51.3 5.4 69 160-236 28-99 (271)
120 KOG0196 Tyrosine kinase, EPH ( 94.2 0.24 5.3E-06 53.2 9.2 73 70-153 455-537 (996)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 93.8 0.087 1.9E-06 51.0 4.8 68 161-236 43-113 (285)
122 cd07418 MPP_PP7 PP7, metalloph 93.5 0.11 2.5E-06 51.9 5.2 65 161-236 67-138 (377)
123 cd07414 MPP_PP1_PPKL PP1, PPKL 93.5 0.11 2.3E-06 50.6 4.9 68 161-236 51-121 (293)
124 KOG4419 5' nucleotidase [Nucle 93.2 0.53 1.1E-05 49.1 9.4 58 291-359 211-270 (602)
125 PTZ00239 serine/threonine prot 93.2 0.13 2.9E-06 50.1 5.0 68 161-236 44-114 (303)
126 KOG3947 Phosphoesterases [Gene 93.1 3.1 6.7E-05 39.4 13.4 70 156-239 58-129 (305)
127 COG1311 HYS2 Archaeal DNA poly 93.1 0.32 6.9E-06 49.5 7.6 80 157-236 223-321 (481)
128 PTZ00480 serine/threonine-prot 92.7 0.17 3.7E-06 49.6 5.0 68 161-236 60-130 (320)
129 cd07417 MPP_PP5_C PP5, C-termi 92.2 0.2 4.4E-06 49.2 4.9 23 335-357 233-255 (316)
130 cd07419 MPP_Bsu1_C Arabidopsis 91.8 0.3 6.5E-06 48.0 5.5 22 335-356 242-263 (311)
131 PTZ00244 serine/threonine-prot 91.5 0.2 4.4E-06 48.7 3.9 67 162-236 54-123 (294)
132 cd00063 FN3 Fibronectin type 3 89.9 2 4.3E-05 32.3 7.7 22 118-139 55-76 (93)
133 smart00060 FN3 Fibronectin typ 89.2 3.1 6.7E-05 30.1 8.1 68 62-139 7-76 (83)
134 PF10518 TAT_signal: TAT (twin 87.1 0.77 1.7E-05 26.9 2.6 16 3-18 3-18 (26)
135 PF04042 DNA_pol_E_B: DNA poly 84.9 0.99 2.2E-05 41.5 3.7 77 162-238 1-93 (209)
136 KOG4221 Receptor mediating net 80.2 4.2 9.2E-05 46.0 6.7 80 58-152 618-712 (1381)
137 KOG4221 Receptor mediating net 75.8 22 0.00048 40.7 10.5 85 70-167 533-629 (1381)
138 KOG3513 Neural cell adhesion m 74.4 19 0.00042 40.7 9.8 87 58-155 822-918 (1051)
139 KOG0374 Serine/threonine speci 70.1 5.3 0.00011 39.5 3.9 70 161-236 60-131 (331)
140 KOG0372 Serine/threonine speci 68.2 7.2 0.00016 36.3 4.0 67 162-236 45-114 (303)
141 KOG0371 Serine/threonine prote 66.8 7.3 0.00016 36.5 3.8 68 161-236 61-131 (319)
142 PTZ00235 DNA polymerase epsilo 66.4 22 0.00048 34.3 7.1 80 157-236 25-122 (291)
143 TIGR02811 formate_TAT formate 65.6 6.3 0.00014 28.9 2.6 14 3-16 10-23 (66)
144 COG2248 Predicted hydrolase (m 64.6 19 0.0004 33.9 6.0 77 157-236 174-250 (304)
145 KOG4258 Insulin/growth factor 59.5 30 0.00066 38.1 7.3 110 59-169 489-624 (1025)
146 cd07390 MPP_AQ1575 Aquifex aeo 59.2 8.5 0.00019 33.9 2.8 33 311-361 108-140 (168)
147 TIGR01409 TAT_signal_seq Tat ( 55.8 11 0.00025 22.5 2.1 14 3-16 2-15 (29)
148 KOG0373 Serine/threonine speci 53.5 14 0.00031 33.7 3.2 64 162-236 48-117 (306)
149 PF06874 FBPase_2: Firmicute f 52.4 11 0.00025 39.9 2.8 42 185-237 184-225 (640)
150 PF07803 GSG-1: GSG1-like prot 49.9 89 0.0019 25.6 6.8 13 71-83 67-79 (118)
151 PF10399 UCR_Fe-S_N: Ubiquitin 46.2 22 0.00047 23.4 2.4 9 3-11 10-18 (41)
152 PF10179 DUF2369: Uncharacteri 45.0 75 0.0016 31.0 6.9 50 121-170 16-78 (300)
153 KOG3513 Neural cell adhesion m 43.1 1.2E+02 0.0027 34.6 9.0 73 58-139 617-693 (1051)
154 TIGR02855 spore_yabG sporulati 42.4 20 0.00043 34.1 2.5 51 295-358 115-166 (283)
155 PF05582 Peptidase_U57: YabG p 41.5 26 0.00055 33.6 3.1 51 295-358 116-167 (287)
156 KOG0375 Serine-threonine phosp 39.9 29 0.00064 34.2 3.2 67 161-236 89-159 (517)
157 cd07424 MPP_PrpA_PrpB PrpA and 37.0 36 0.00077 31.1 3.3 14 346-359 168-181 (207)
158 KOG2476 Uncharacterized conser 36.7 46 0.001 34.0 4.2 68 159-233 5-75 (528)
159 PF07353 Uroplakin_II: Uroplak 36.1 44 0.00096 28.9 3.4 31 123-153 105-140 (184)
160 COG3855 Fbp Uncharacterized pr 36.0 37 0.0008 34.7 3.4 42 185-237 190-231 (648)
161 cd02852 Isoamylase_N_term Isoa 32.0 58 0.0013 26.7 3.5 23 117-139 48-70 (119)
162 cd02856 Glycogen_debranching_e 31.5 62 0.0013 25.7 3.5 23 117-139 44-66 (103)
163 PF01784 NIF3: NIF3 (NGG1p int 31.4 50 0.0011 31.1 3.4 43 313-357 56-98 (241)
164 PRK09898 hypothetical protein; 29.2 25 0.00055 32.2 1.0 13 1-13 12-24 (208)
165 cd02853 MTHase_N_term Maltooli 29.1 69 0.0015 24.4 3.3 22 118-140 40-61 (85)
166 COG2843 PgsA Putative enzyme o 27.7 1.4E+02 0.0031 30.0 6.0 60 297-363 213-273 (372)
167 TIGR03000 plancto_dom_1 Planct 27.0 1.3E+02 0.0029 22.6 4.2 24 116-139 25-48 (75)
168 cd02860 Pullulanase_N_term Pul 26.8 78 0.0017 25.0 3.3 24 116-139 45-68 (100)
169 PRK14993 tetrathionate reducta 26.0 55 0.0012 30.9 2.6 13 1-13 2-14 (244)
170 PRK10301 hypothetical protein; 23.7 4.3E+02 0.0093 22.0 10.3 20 117-137 85-107 (124)
171 PF03808 Glyco_tran_WecB: Glyc 21.9 3.3E+02 0.0071 23.9 6.7 52 291-354 58-109 (172)
172 PRK09968 serine/threonine-spec 21.8 85 0.0018 28.9 3.0 14 345-358 178-191 (218)
173 PRK10799 metal-binding protein 21.4 1.9E+02 0.0041 27.3 5.3 44 313-359 59-102 (247)
174 PRK10882 hydrogenase 2 protein 20.9 70 0.0015 31.7 2.3 13 3-15 2-14 (328)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-78 Score=588.97 Aligned_cols=424 Identities=41% Similarity=0.640 Sum_probs=363.9
Q ss_pred cCCCCCccCCcCCCCCCcCcCCCCcccccCCCCCCCceEEEEeecCCCCcEEEEEEcCCCCCCCEEEEeecCCCCc----
Q 011679 24 GGSAGITSKFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFD---- 99 (479)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~P~~v~l~~~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~~---- 99 (479)
.+.++.++.+.|...++..++...-++..|...+.|+||||++++.. ++|+|+|.|.+.. ...|+|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peQvhlS~~~~~-~~m~VswvT~~~~-~~~V~Yg~~~~~~~~~~~ 87 (452)
T KOG1378|consen 10 EINPKHTLHDINPLPGTLHLLSESEQLTFPSVVNSPEQVHLSFTDNL-NEMRVSWVTGDGE-ENVVRYGEVKDKLDNSAA 87 (452)
T ss_pred eccCCCccccccccCcccccccccccccCcccCCCCCeEEEeccCCC-CcEEEEEeCCCCC-CceEEEeecCCCcccccc
Confidence 45566667777776666666666666777888889999999999875 4999999999753 38999998766522
Q ss_pred -eEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEEEeCCC-CCceeEEEECCCCCCCCCCeEEEEEecCCCCCCcHHH
Q 011679 100 -FTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGSG-DSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLST 177 (479)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Yrv~~~-~~s~~~~f~T~p~~~~~~~~~f~~~gD~~~~~~~~~~ 177 (479)
..+.+.+..+...++.++++|+|.+++|+|+|+|||||+++ .||+++.|+|+| ++..+.+|+++||++.......+
T Consensus 88 ~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~s~ 165 (452)
T KOG1378|consen 88 RGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYYYQVGSDLKWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYTST 165 (452)
T ss_pred ccceEEEecccccccceeeeEeeeeecCCCCCceEEEEeCCCCCcccceEeECCC--CccCceeEEEEccccccccccch
Confidence 22333333344445789999999999999999999999987 589999999998 34579999999999999888788
Q ss_pred HHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccCCCcccccccccccccc
Q 011679 178 LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPT 256 (479)
Q Consensus 178 l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+..+.+. ++|+|||+||++|+++..+ .+||.|.++++++++.+|+|++.||||+++.+.. .|.+|.+||.|
T Consensus 166 ~~~~~~~~k~d~vlhiGDlsYa~~~~n----~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~m 237 (452)
T KOG1378|consen 166 LRNQEENLKPDAVLHIGDLSYAMGYSN----WQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFNM 237 (452)
T ss_pred HhHHhcccCCcEEEEecchhhcCCCCc----cchHHHHhhhhhhhccCceEEecccccccCCCcc----cccccceeecc
Confidence 8887777 5999999999999988632 6899999999999999999999999999865433 68899999999
Q ss_pred CcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCC--CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCC-ccCcCH-
Q 011679 257 PHLASKSSSPLWYAIRRASAHIIVLSSYSPFV--KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA-HFMEGE- 332 (479)
Q Consensus 257 p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~--~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~-~~~~~~- 332 (479)
|.+++....+.||||++|++|||+|+|+.+++ .+.+|.+||+++|++++|++.||+|+++|.|+|++... +.++++
T Consensus 238 P~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~ 317 (452)
T KOG1378|consen 238 PGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEF 317 (452)
T ss_pred CCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcc
Confidence 99988877789999999999999999988753 46899999999999998776899999999999998875 566666
Q ss_pred -HHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCcc
Q 011679 333 -SMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYS 411 (479)
Q Consensus 333 -~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~ 411 (479)
.++..|++||.+++||++|.||.|+|||++|+++.++...++ +.++.++++|+||++|+||+.++.... ..++|+||
T Consensus 318 ~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~-~~~~~d~~aPvyI~~G~~G~~e~~~~~-~~~~p~~S 395 (452)
T KOG1378|consen 318 ESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWG-PVHLVDGMAPIYITVGDGGNHEHLDPF-SSPQPEWS 395 (452)
T ss_pred hhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCC-cccccCCCCCEEEEEccCCcccccCcc-cCCCCccc
Confidence 788999999999999999999999999999999988776666 788899999999999999999987544 44799999
Q ss_pred ceeeccccEEEEEEecccEEEEEEEEcCCCceeeeeeEEEEecccCChhh
Q 011679 412 AFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWASNRR 461 (479)
Q Consensus 412 ~~~~~~~Gf~~l~v~~~t~~~~~~~~~~~g~~~~~D~f~i~~~~~~~~~~ 461 (479)
+||+.+|||++|+++|+||+.++|+++.|++.++.|+|||.|+...+...
T Consensus 396 a~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~~ 445 (452)
T KOG1378|consen 396 AFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVVG 445 (452)
T ss_pred ccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCccccc
Confidence 99999999999999999999999999977766779999999998876654
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=4.4e-75 Score=589.27 Aligned_cols=406 Identities=40% Similarity=0.685 Sum_probs=338.3
Q ss_pred CCCCCccCCcCCCCCCcCcCCCCcccccCCCCCCCceEEEEeecCCCCcEEEEEEcCCCCCCCEEEEeecCCCCceEEEe
Q 011679 25 GSAGITSKFIRTEWPSIDIPLDNEAFAVPKGHNSPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADKFDFTAEG 104 (479)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~P~~v~l~~~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~~~~~~~ 104 (479)
|+.+.+.++.|.+.....++++. ....+..|+||||++++ .++|+|+|.|.+. ..+.|+||++++.++.++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~P~qvhls~~~--~~~m~V~W~T~~~-~~~~V~yG~~~~~l~~~a~g 86 (427)
T PLN02533 14 VLAGNVLSYDRPGTRKNLVIHPD----NEDDPTHPDQVHISLVG--PDKMRISWITQDS-IPPSVVYGTVSGKYEGSANG 86 (427)
T ss_pred hhccCcccccCCCcccccccccc----CCCCCCCCceEEEEEcC--CCeEEEEEECCCC-CCCEEEEecCCCCCcceEEE
Confidence 34445666777644443332211 11355679999999987 3799999999865 46899999999988889999
Q ss_pred EEEEEee-ecceeceEEEEEeCCCCCCCEEEEEeCCCCCceeEEEECCCCCCCCCCeEEEEEecCCCCCCcHHHHHHHHH
Q 011679 105 TVNNYTF-YKYKSGYIHQCLVDGLEYDTKYYYKIGSGDSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLSTLEHYME 183 (479)
Q Consensus 105 ~~~~~~~-~~~~~~~~~~v~l~gL~p~t~Y~Yrv~~~~~s~~~~f~T~p~~~~~~~~~f~~~gD~~~~~~~~~~l~~i~~ 183 (479)
++.+|.+ ..+.++++|+|+|+||+|+|+|+|||+...+|++++|+|+|. ..+++|+++||+|.......+++++.+
T Consensus 87 ~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~---~~~~~f~v~GDlG~~~~~~~tl~~i~~ 163 (427)
T PLN02533 87 TSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGPSSTQEFSFRTPPS---KFPIKFAVSGDLGTSEWTKSTLEHVSK 163 (427)
T ss_pred EEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCCCCccceEEECCCC---CCCeEEEEEEeCCCCcccHHHHHHHHh
Confidence 8888764 235678999999999999999999999877789999999885 368999999999877666678888888
Q ss_pred hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCCCCC
Q 011679 184 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKS 263 (479)
Q Consensus 184 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 263 (479)
.+|||||++||++|+++. +.+|+.|.+.++++.+.+|+|+++||||....+.. ....|..|..+|.||....+.
T Consensus 164 ~~pD~vl~~GDl~y~~~~-----~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~g~ 237 (427)
T PLN02533 164 WDYDVFILPGDLSYANFY-----QPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEESGS 237 (427)
T ss_pred cCCCEEEEcCccccccch-----HHHHHHHHHHhhhHhhcCceEEeCccccccccccc-cCcCccchhhcccCCccccCC
Confidence 899999999999997643 67899999999999989999999999998643211 223567889999999876555
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCc--CHHHHHHHHHH
Q 011679 264 SSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFESW 341 (479)
Q Consensus 264 ~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l 341 (479)
..+.||+|++|++|||+||++.++....+|++||+++|++++++..+|+|+++|+|+|++...+... ...+++.|+++
T Consensus 238 ~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~L 317 (427)
T PLN02533 238 TSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETL 317 (427)
T ss_pred CCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHH
Confidence 6789999999999999999998877789999999999999877788999999999999876544222 24578899999
Q ss_pred HHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEE
Q 011679 342 FVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHS 421 (479)
Q Consensus 342 ~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~ 421 (479)
|.+++||++|+||+|.|||++|+++++ + +++||+||++|+||+.++....+..++|+|++|++.+|||+
T Consensus 318 l~~~~VdlvlsGH~H~YeR~~p~~~~~-------~----~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~ 386 (427)
T PLN02533 318 LYKARVDLVFAGHVHAYERFDRVYQGK-------T----DKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHG 386 (427)
T ss_pred HHHhCCcEEEecceecccccccccCCc-------c----CCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEE
Confidence 999999999999999999999987643 2 46899999999999998865566778899999999999999
Q ss_pred EEEEecccEEEEEEEEcCCCceeeeeeEEEEecccC
Q 011679 422 TLEIKNRTHAFYHWNRNDDGKKVATDSFILHNQYWA 457 (479)
Q Consensus 422 ~l~v~~~t~~~~~~~~~~~g~~~~~D~f~i~~~~~~ 457 (479)
+|+|.|.|||.|+|++++|++.++.|+|||.|....
T Consensus 387 ~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~ 422 (427)
T PLN02533 387 QLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTE 422 (427)
T ss_pred EEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccCC
Confidence 999999999999999988887667999999986543
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=3.2e-46 Score=365.63 Aligned_cols=285 Identities=45% Similarity=0.806 Sum_probs=224.3
Q ss_pred CCCeEEEEEecCCCC-CCcHHHHHHHHH--hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCc
Q 011679 157 DASYKFGIIGDLGQT-YNSLSTLEHYME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~-~~~~~~l~~i~~--~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 233 (479)
..++||+++||+|.. .....+++.+.+ .+|||||++||++|+.+... ..+|+.|.+.++++...+|+++++|||
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~---~~~~~~~~~~~~~~~~~~P~~~~~GNH 78 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNN---GSRWDTFMRQIEPLASYVPYMVTPGNH 78 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCcc---chhHHHHHHHHHHHHhcCCcEEcCccc
Confidence 468999999999973 456778888887 59999999999999766421 367899999999998899999999999
Q ss_pred ccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCC---CCChHHHHHHHHHHhhccCCCCC
Q 011679 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF---VKYTPQWEWLREELKKVDREKTP 310 (479)
Q Consensus 234 D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~---~~~~~Q~~WL~~~L~~~~~~~~~ 310 (479)
|+........ ...+..++.++........+.||+|++|+++||+|||+... ....+|++||+++|++.++.+.+
T Consensus 79 D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~ 155 (294)
T cd00839 79 EADYNFSFYK---IKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTP 155 (294)
T ss_pred ccccCCCCcc---cccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCC
Confidence 9864322111 01111123333333344567899999999999999997654 46789999999999987555678
Q ss_pred eEEEEeccccccCCCCccC--cCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEE
Q 011679 311 WLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYI 388 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i 388 (479)
|+||++|+|+++....... .....++.|.++|++++|+++|+||+|.|+|++|+++++.. +.+..+.+++|++||
T Consensus 156 ~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~---~~~~~~~~~~g~~yi 232 (294)
T cd00839 156 WIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV---GDCNPYSNPKGPVHI 232 (294)
T ss_pred eEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec---cccccccCCCccEEE
Confidence 9999999999987654322 24567889999999999999999999999999999775521 334445678999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecccEEEEEEEEcCCCceeeeeeEEEEe
Q 011679 389 TVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 453 (479)
Q Consensus 389 ~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~~~~~g~~~~~D~f~i~~ 453 (479)
++|+||+.+...... .+.++|+++....+||++|++.++|+|.++|+++.+|++ +|+|+|.|
T Consensus 233 v~G~~G~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v--~D~f~i~k 294 (294)
T cd00839 233 VIGAGGNDEGLDPFS-APPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVV--IDSFWIIK 294 (294)
T ss_pred EECCCccccCcCccc-CCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeE--EEEEEEeC
Confidence 999999987642221 123579999999999999999999999999999888976 79999986
No 4
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-39 Score=310.76 Aligned_cols=291 Identities=19% Similarity=0.216 Sum_probs=227.0
Q ss_pred EEEeecCCCCcEEEEEEcCCC-------CCCCEEEEeecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEE
Q 011679 63 HITQGDYDGKAVIISWVTPHE-------PGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYY 135 (479)
Q Consensus 63 ~l~~~~~~~~~~~v~W~t~~~-------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Y 135 (479)
|...+|||.....|.|++.+. +....+||++++++.+.+..|+..+.+ ..+|++|+.++||+|++.|+|
T Consensus 41 ~GVaSGDp~~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a~p----~~dhtv~v~~~gL~P~~~yfY 116 (522)
T COG3540 41 HGVASGDPTATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIASP----ELDHTVHVDLRGLSPDQDYFY 116 (522)
T ss_pred cccccCCCCCCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccCCc----ccCceEEEeccCCCCCceEEE
Confidence 334446788999999998751 456788999998888888888776644 678999999999999999999
Q ss_pred EeCCC-CCceeEEEECCCCCCCC-CCeEEEEEecCCCCCCcHHHHHHHHHhCCCEEEEcCcccccCccc-----------
Q 011679 136 KIGSG-DSSREFWFQTPPKIDPD-ASYKFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQ----------- 202 (479)
Q Consensus 136 rv~~~-~~s~~~~f~T~p~~~~~-~~~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~y~~~~~----------- 202 (479)
||..+ ..|++++|||+|+++.. .-++|+..+|.+++.+...+++.|.+.+||||||+||+||+++..
T Consensus 117 Rf~~~~~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~ 196 (522)
T COG3540 117 RFKAGDERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKN 196 (522)
T ss_pred EEeeCCccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCcccccccccccc
Confidence 99886 57899999999998765 467888899999998999999999999999999999999998752
Q ss_pred -------------ccccchhhhHHH--HHHHhhhccCCeEEcCCCcccccccCCCccc--c-c----------ccccccc
Q 011679 203 -------------FIDVGVRWDSWG--RFVERSAAYQPWIWSAGNHEIEYMTYMGEVV--P-F----------KSYLHRY 254 (479)
Q Consensus 203 -------------~~~~~~~~~~~~--~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~--~-~----------~~~~~~~ 254 (479)
+.+|+.+|..+. +.++.+++..||+++|++||+.+|+..+... + + .+++.++
T Consensus 197 ~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyy 276 (522)
T COG3540 197 VVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYY 276 (522)
T ss_pred cccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHHHHH
Confidence 123677777664 6789999999999999999998775433211 0 1 1333333
Q ss_pred c-cCcCCCCC--CCCcEEEEEeCC-EEEEEEcCCCCC----------------------CCChHHHHHHHHHHhhccCCC
Q 011679 255 P-TPHLASKS--SSPLWYAIRRAS-AHIIVLSSYSPF----------------------VKYTPQWEWLREELKKVDREK 308 (479)
Q Consensus 255 ~-~p~~~~~~--~~~~yysf~~g~-~~fi~Ldt~~~~----------------------~~~~~Q~~WL~~~L~~~~~~~ 308 (479)
+ ||.+.... ....|++|.+|+ +.|.+||+.... ..|.+|.+||++.|.+ ++
T Consensus 277 E~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~---Sk 353 (522)
T COG3540 277 EHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGA---SK 353 (522)
T ss_pred HhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhh---cc
Confidence 3 67664432 367899999998 689999995422 2478999999999999 88
Q ss_pred CCeEEEEeccccccCCC-------------CccCcCHHHHHHHHHHHHHcCcc--EEEeccccccee
Q 011679 309 TPWLIVLMHVPIYNSNE-------------AHFMEGESMRAAFESWFVRYKVD--VVFAGHVHAYER 360 (479)
Q Consensus 309 ~~w~Iv~~H~P~~~~~~-------------~~~~~~~~~~~~l~~l~~~~~Vd--lvlsGH~H~y~r 360 (479)
+.|+|+....|+--... +.|.+...-|++|+.+++..++. ++|+|++|...-
T Consensus 354 atWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA 420 (522)
T COG3540 354 ATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWA 420 (522)
T ss_pred hhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHH
Confidence 99999999998732111 12334455688999999998875 999999997543
No 5
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=3.5e-36 Score=294.95 Aligned_cols=259 Identities=15% Similarity=0.248 Sum_probs=192.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH----HHh-CCCEEEEcCcccccCcccccccchhhhH-HHHHHHhhh--ccCCeEE
Q 011679 157 DASYKFGIIGDLGQTYNSLSTLEHY----MES-GAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSA--AYQPWIW 228 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~~~~~l~~i----~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~~--~~~P~~~ 228 (479)
...++|+++||+|.+...+..+++. .+. ++||||.+||++ .+|....+ +.+|+. |.+.+.+.. .++||++
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~-Dp~f~~~FE~vY~~~s~~L~~Pwy~ 101 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLN-DPKWKHCFENVYSEESGDMQIPFFT 101 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCcc-chhHHhhHhhhccCcchhhCCCeEE
Confidence 4689999999999866556555443 333 899999999999 66766555 677755 556665554 5789999
Q ss_pred cCCCcccccccCCCccc--------------cc---cccccccccCcCCCCCCCCcEEEE----Ee-------------C
Q 011679 229 SAGNHEIEYMTYMGEVV--------------PF---KSYLHRYPTPHLASKSSSPLWYAI----RR-------------A 274 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~~--------------~~---~~~~~~~~~p~~~~~~~~~~yysf----~~-------------g 274 (479)
++||||+..+...+-.. .| .....+|.||. .||++ .. .
T Consensus 102 vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~~~ 173 (394)
T PTZ00422 102 VLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHKDM 173 (394)
T ss_pred eCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeeeecccccccccccCCCC
Confidence 99999996543321100 00 01236888884 57754 11 2
Q ss_pred CEEEEEEcCCCC-----CC-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCcc
Q 011679 275 SAHIIVLSSYSP-----FV-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD 348 (479)
Q Consensus 275 ~~~fi~Ldt~~~-----~~-~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd 348 (479)
.+.||+|||..- +. ....|++||+++|+.+ ++.++|+||++|||+|+++.++ +...++..|+|||++|+||
T Consensus 174 ~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~hg--~~~~L~~~L~PLL~ky~Vd 250 (394)
T PTZ00422 174 SVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSSK--GDSYLSYYLLPLLKDAQVD 250 (394)
T ss_pred EEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCCC--CCHHHHHHHHHHHHHcCcC
Confidence 389999999531 11 2468999999999653 2567899999999999988643 4467889999999999999
Q ss_pred EEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecc
Q 011679 349 VVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNR 428 (479)
Q Consensus 349 lvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~ 428 (479)
++||||+|+|||..+ +++.||++|+||+..+.. ...++++.|....+||+.+++ +.
T Consensus 251 lYisGHDH~lq~i~~-------------------~gt~yIvSGaGs~~~~~~----~~~~~~s~F~~~~~GF~~~~l-~~ 306 (394)
T PTZ00422 251 LYISGYDRNMEVLTD-------------------EGTAHINCGSGGNSGRKS----IMKNSKSLFYSEDIGFCIHEL-NA 306 (394)
T ss_pred EEEEccccceEEecC-------------------CCceEEEeCccccccCCC----CCCCCCcceecCCCCEEEEEE-ec
Confidence 999999999999752 468899999998865421 123458889888999999998 66
Q ss_pred cEEEEEEEEcCCCceeeeeeEEEEec
Q 011679 429 THAFYHWNRNDDGKKVATDSFILHNQ 454 (479)
Q Consensus 429 t~~~~~~~~~~~g~~~~~D~f~i~~~ 454 (479)
+.+.++|+.+.+|++ ++++++.++
T Consensus 307 ~~l~~~fid~~~Gkv--L~~~~~~~~ 330 (394)
T PTZ00422 307 EGMVTKFVSGNTGEV--LYTHKQPLK 330 (394)
T ss_pred CEEEEEEEeCCCCcE--EEEeeeccc
Confidence 679999997678987 699888654
No 6
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=1.5e-33 Score=273.45 Aligned_cols=247 Identities=21% Similarity=0.377 Sum_probs=176.2
Q ss_pred eEEEEEecCCCC-CCcHH----HHHHHHH-hCCCEEEEcCcccccCcccccccchhh-hHHHHHHHhhhccCCeEEcCCC
Q 011679 160 YKFGIIGDLGQT-YNSLS----TLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGN 232 (479)
Q Consensus 160 ~~f~~~gD~~~~-~~~~~----~l~~i~~-~~pd~vl~~GD~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v~GN 232 (479)
++|+++||++.. ...+. .+.++++ .+|||||++||++|+++..... ..+| +.|.+.++.+..++|+++++||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~-~~~~~~~~~~~~~~~~~~~P~~~v~GN 79 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVD-DPRFETTFEDVYSAPSLQVPWYLVLGN 79 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCc-chHHHHHHHHHccchhhcCCeEEecCC
Confidence 589999999986 23222 2334444 3999999999999988754332 3334 3455555555457899999999
Q ss_pred cccccccCCCccccccc--cccccccCcCCCCCCCCcEEEEEeC------CEEEEEEcCCCCC---------------CC
Q 011679 233 HEIEYMTYMGEVVPFKS--YLHRYPTPHLASKSSSPLWYAIRRA------SAHIIVLSSYSPF---------------VK 289 (479)
Q Consensus 233 HD~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~yysf~~g------~~~fi~Ldt~~~~---------------~~ 289 (479)
||+..+.. ....+.. +..+|.+| ..||+|+++ +++||+|||.... ..
T Consensus 80 HD~~~~~~--~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 80 HDYSGNVS--AQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred cccCCCch--heeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 99863211 1111111 12333343 478999998 7999999996421 13
Q ss_pred ChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcc
Q 011679 290 YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHY 369 (479)
Q Consensus 290 ~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~ 369 (479)
+.+|++||+++|++. ..+|+||++|||+++..... .....++.|.+++++++|+++|+||+|.+++..+
T Consensus 150 ~~~Q~~wL~~~L~~~---~~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~------ 218 (277)
T cd07378 150 AEEQLAWLEKTLAAS---TADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD------ 218 (277)
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeec------
Confidence 579999999999984 34899999999999765432 2256788999999999999999999999998763
Q ss_pred cccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecccEEEEEEEEcCCC
Q 011679 370 NISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDG 441 (479)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~~~~~g 441 (479)
...++.||++|+||...+.........|.|..++...+||++|+|.+ +.+.++|+. .||
T Consensus 219 -----------~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~-~~g 277 (277)
T cd07378 219 -----------DGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD-ADG 277 (277)
T ss_pred -----------CCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC-CCC
Confidence 13578999999988876543222222345788888999999999964 468899874 444
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=100.00 E-value=1.6e-33 Score=290.97 Aligned_cols=288 Identities=21% Similarity=0.313 Sum_probs=160.9
Q ss_pred ecCCCCcEEEEEEcCCC--------CCCCEEE--EeecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEEE
Q 011679 67 GDYDGKAVIISWVTPHE--------PGPSTVS--YGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYK 136 (479)
Q Consensus 67 ~~~~~~~~~v~W~t~~~--------~~~~~v~--y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Yr 136 (479)
.|||..+.+|.|++... .....|+ +.+.+++...+..+...+- ...+|+++|+|+||+|+|+|+||
T Consensus 5 sGdp~~~svilWtR~~~~~~~~~~~~~~~~V~~~va~d~~~~~~~~~~~~~~~----~~~d~t~~v~v~gL~p~t~Y~Y~ 80 (453)
T PF09423_consen 5 SGDPTPDSVILWTRVTPPAAAGGMPKAPVPVRWEVATDPEFSNVVRSGTVTTT----AERDFTVKVDVTGLQPGTRYYYR 80 (453)
T ss_dssp EE---SS-EEEEEE--SBGGTB---SS-EEEEEEEESSTTSSSEEEEEEEEE-----GGGTTEEEEEE-S--TT-EEEEE
T ss_pred ccCCCCCEEEEEEEecCcccCCCCCCCcEEEEEEEECCCCccceEEecceecc----cCCCeEeecccCCCCCCceEEEE
Confidence 35688899999998765 1133444 4444454555666665442 36789999999999999999999
Q ss_pred eCCC---CCceeEEEECCCCCCCCCCeEEEEEecCCCCCCcHHHHHHHHH-hCCCEEEEcCcccccCcc-----------
Q 011679 137 IGSG---DSSREFWFQTPPKIDPDASYKFGIIGDLGQTYNSLSTLEHYME-SGAQTVLFLGDLSYADRY----------- 201 (479)
Q Consensus 137 v~~~---~~s~~~~f~T~p~~~~~~~~~f~~~gD~~~~~~~~~~l~~i~~-~~pd~vl~~GD~~y~~~~----------- 201 (479)
|... ..|++++|||+|... ...+||+++||.+.......+++++++ .+|||+||+||++|++..
T Consensus 81 ~~~~~~~~~s~~g~~rT~p~~~-~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~ 159 (453)
T PF09423_consen 81 FVVDGGGQTSPVGRFRTAPDGD-PDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPI 159 (453)
T ss_dssp EEE--TTEE---EEEE--TT------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----TTSS--TT---S
T ss_pred EEEecCCCCCCceEEEcCCCCC-CCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccCCccccccccccc
Confidence 9873 568999999996542 357999999999987777889999999 499999999999999852
Q ss_pred -----------cccccchhhhHHH--HHHHhhhccCCeEEcCCCcccccccCCCccc-------cc-----cccccccc-
Q 011679 202 -----------QFIDVGVRWDSWG--RFVERSAAYQPWIWSAGNHEIEYMTYMGEVV-------PF-----KSYLHRYP- 255 (479)
Q Consensus 202 -----------~~~~~~~~~~~~~--~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~-------~~-----~~~~~~~~- 255 (479)
...+|+.+|..+. ..++.+++++|++++|++||+.+|....... .+ .+++.++.
T Consensus 160 ~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~ 239 (453)
T PF09423_consen 160 GRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEY 239 (453)
T ss_dssp -----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHHHHhh
Confidence 0112334444432 4577788899999999999997654421110 01 12222221
Q ss_pred cCcCC---CCCCCCcEEEEEeCC-EEEEEEcCCCCC---------------------CCChHHHHHHHHHHhhccCCCCC
Q 011679 256 TPHLA---SKSSSPLWYAIRRAS-AHIIVLSSYSPF---------------------VKYTPQWEWLREELKKVDREKTP 310 (479)
Q Consensus 256 ~p~~~---~~~~~~~yysf~~g~-~~fi~Ldt~~~~---------------------~~~~~Q~~WL~~~L~~~~~~~~~ 310 (479)
+|.+. .......|++|++|+ +.|++||++... .+|.+|++||++.|++ +.++
T Consensus 240 ~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~---s~a~ 316 (453)
T PF09423_consen 240 QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS---SQAT 316 (453)
T ss_dssp S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH-----SS
T ss_pred cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc---CCCc
Confidence 33321 122356799999999 999999995321 2478999999999998 6689
Q ss_pred eEEEEeccccccCCC-----------CccCcCHHHHHHHHHHHHHcCcc--EEEecccccceeee
Q 011679 311 WLIVLMHVPIYNSNE-----------AHFMEGESMRAAFESWFVRYKVD--VVFAGHVHAYERSY 362 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~Vd--lvlsGH~H~y~r~~ 362 (479)
|+||+.-.|+..... ..|......|++|.++|.+.++. ++|+|++|...-..
T Consensus 317 ~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~ 381 (453)
T PF09423_consen 317 WKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASR 381 (453)
T ss_dssp EEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEE
T ss_pred EEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeee
Confidence 999999888754332 23455677899999999988775 88999999976654
No 8
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-30 Score=231.24 Aligned_cols=263 Identities=19% Similarity=0.269 Sum_probs=175.5
Q ss_pred CCCCeEEEEEecCCCCCCcHHH-----HHHHHHh-CCCEEEEcCcccccCcccccccchhh-hHHHHHHHhhhccCCeEE
Q 011679 156 PDASYKFGIIGDLGQTYNSLST-----LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIW 228 (479)
Q Consensus 156 ~~~~~~f~~~gD~~~~~~~~~~-----l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~ 228 (479)
+++.++|+++||++......+. +..|.+. +.||||.+||++|.+|..... +.++ +.|.+.+..-.-+.|||.
T Consensus 40 ~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~-Dp~Fq~sF~nIYT~pSLQkpWy~ 118 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN-DPRFQDSFENIYTAPSLQKPWYS 118 (336)
T ss_pred CCCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCC-ChhHHhhhhhcccCcccccchhh
Confidence 4689999999999976543322 2233333 999999999999999876544 4444 334444444344679999
Q ss_pred cCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEE------EEeCCEEEEEEcCCCC-------C-C------
Q 011679 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYA------IRRASAHIIVLSSYSP-------F-V------ 288 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yys------f~~g~~~fi~Ldt~~~-------~-~------ 288 (479)
+.||||+..|-..+-..-+.....||..|. .||. +..-++.++++|+... + +
T Consensus 119 vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~ 190 (336)
T KOG2679|consen 119 VLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVK 190 (336)
T ss_pred hccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecccccccccccCChHHH
Confidence 999999976533222112445556666553 1211 0111344445444211 1 0
Q ss_pred CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCc
Q 011679 289 KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLH 368 (479)
Q Consensus 289 ~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~ 368 (479)
....|+.||+..|++ +.++|+||++|||+.+.+.+ +...++.++|.|+|++++||++++||+|+.|+..-
T Consensus 191 ~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~H--G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~----- 260 (336)
T KOG2679|consen 191 YLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAGHH--GPTKELEKQLLPILEANGVDLYINGHDHCLQHISS----- 260 (336)
T ss_pred HHHHHHHHHHHHHHH---hhcceEEEecccceehhhcc--CChHHHHHHHHHHHHhcCCcEEEecchhhhhhccC-----
Confidence 125789999999999 78999999999999987764 35578899999999999999999999999998641
Q ss_pred ccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCC-CCCCCccceeeccccEEEEEEecccEEEEEEEEcCCCceeeee
Q 011679 369 YNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFR-YPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATD 447 (479)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~-~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~~~~~g~~~~~D 447 (479)
...++-|+++|+|... +...... ...|+...|....-||+.+++ ....+++.|+. ..|++ ..
T Consensus 261 ------------~e~~iqf~tSGagSka-w~g~~~~~~~~p~~lkF~YdgqGfmsv~i-s~~e~~vvfyD-~~G~~--Lh 323 (336)
T KOG2679|consen 261 ------------PESGIQFVTSGAGSKA-WRGTDHNPEVNPKELKFYYDGQGFMSVEI-SHSEARVVFYD-VSGKV--LH 323 (336)
T ss_pred ------------CCCCeeEEeeCCcccc-cCCCccCCccChhheEEeeCCCceEEEEE-ecceeEEEEEe-ccCce--EE
Confidence 1245667777765543 2211211 234555677777789999999 45668888886 46886 35
Q ss_pred eEEEEec
Q 011679 448 SFILHNQ 454 (479)
Q Consensus 448 ~f~i~~~ 454 (479)
.....|+
T Consensus 324 k~~t~kr 330 (336)
T KOG2679|consen 324 KWSTSKR 330 (336)
T ss_pred Eeecccc
Confidence 5444433
No 9
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=6.1e-27 Score=225.21 Aligned_cols=229 Identities=17% Similarity=0.199 Sum_probs=158.4
Q ss_pred CCeEEEEEecCCCCCC--c---------------HHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHH
Q 011679 158 ASYKFGIIGDLGQTYN--S---------------LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 218 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~--~---------------~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~ 218 (479)
++++|+++||+|.+.. . ..+++.+.+. +|||||++||+++....... ...+|+.+.+.++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~-~~~~~~~~~~~~~ 81 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDEL-RERQVSDLKDVLS 81 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhh-HHHHHHHHHHHHh
Confidence 5899999999998731 1 2234455555 89999999999976443211 1234556666666
Q ss_pred hhhccCCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCC------CCChH
Q 011679 219 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF------VKYTP 292 (479)
Q Consensus 219 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~------~~~~~ 292 (479)
.+...+|+++++||||+...+.. ..+..|...| ...||+|++|+++||+|||.... ....+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~~---~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ 148 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPTE---ESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQA 148 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCCh---hHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHH
Confidence 66567899999999998532111 1112232222 23588999999999999995422 23578
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEeccccccCCCCcc----CcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCc
Q 011679 293 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF----MEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLH 368 (479)
Q Consensus 293 Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~ 368 (479)
|++||+++|+++.+.+.+++||++|+|++....... ......+.++.++|++++|+++||||+|.+.+..
T Consensus 149 ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~------ 222 (262)
T cd07395 149 QDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR------ 222 (262)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE------
Confidence 999999999986434567899999999986443211 1234567899999999999999999999987643
Q ss_pred ccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecccEEEEEEE
Q 011679 369 YNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWN 436 (479)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~ 436 (479)
.+++.++++++.|.... ....||..++++.+. +++||+
T Consensus 223 -------------~~g~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~~-~~~~~~ 260 (262)
T cd07395 223 -------------YGGLEMVVTSAIGAQLG----------------NDKSGLRIVKVTEDK-IVHEYY 260 (262)
T ss_pred -------------ECCEEEEEcCceecccC----------------CCCCCcEEEEECCCc-eeeeee
Confidence 13566788877765321 123789999995444 577775
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.92 E-value=9.4e-24 Score=200.46 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=146.2
Q ss_pred EEEEEecCCCCCCc-------------HHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCC
Q 011679 161 KFGIIGDLGQTYNS-------------LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (479)
Q Consensus 161 ~f~~~gD~~~~~~~-------------~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (479)
||+++||+|.+... .+.++.+.+. +||+||++||++.... ...|+.+.+.++.+ .+|
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~l~~~--~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS------PESYERLRELLAAL--PIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC------HHHHHHHHHHHhhc--CCC
Confidence 69999999987531 2234555555 8999999999997532 23445555556554 689
Q ss_pred eEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCC----CCChHHHHHHHHHH
Q 011679 226 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF----VKYTPQWEWLREEL 301 (479)
Q Consensus 226 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~----~~~~~Q~~WL~~~L 301 (479)
++.++||||.... +...|..... .....+|+|+.++++||+||+.... ....+|++||++.|
T Consensus 73 ~~~v~GNHD~~~~-----------~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L 138 (240)
T cd07402 73 VYLLPGNHDDRAA-----------MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAAL 138 (240)
T ss_pred EEEeCCCCCCHHH-----------HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHH
Confidence 9999999998421 1111111000 1234678999999999999986432 13578999999999
Q ss_pred hhccCCCCCeEEEEeccccccCCCCccC-cCHHHHHHHHHHHHHc-CccEEEecccccceeeeeccCCcccccCCccccc
Q 011679 302 KKVDREKTPWLIVLMHVPIYNSNEAHFM-EGESMRAAFESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGDCFPV 379 (479)
Q Consensus 302 ~~~~~~~~~w~Iv~~H~P~~~~~~~~~~-~~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~ 379 (479)
++.. .+++|+++|+|++........ .....++++.+++.++ +++++||||+|......
T Consensus 139 ~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~----------------- 198 (240)
T cd07402 139 AEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS----------------- 198 (240)
T ss_pred HhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE-----------------
Confidence 9852 456899999999765431100 1112367889999999 99999999999975543
Q ss_pred CCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEe
Q 011679 380 PDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIK 426 (479)
Q Consensus 380 ~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~ 426 (479)
.+++.++++|+.|.... +.++..++.+..+||..+++.
T Consensus 199 --~~g~~~~~~gs~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 236 (240)
T cd07402 199 --WGGIPLLTAPSTCHQFA-------PDLDDFALDALAPGYRALSLH 236 (240)
T ss_pred --ECCEEEEEcCcceeeec-------CCCCcccccccCCCCcEEEEe
Confidence 25577888888776532 122344444556788888774
No 11
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=5.4e-23 Score=197.97 Aligned_cols=196 Identities=21% Similarity=0.272 Sum_probs=130.1
Q ss_pred eEEEEEecCCCCCC----------c----HHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCC
Q 011679 160 YKFGIIGDLGQTYN----------S----LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 225 (479)
Q Consensus 160 ~~f~~~gD~~~~~~----------~----~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (479)
|||+++||+|.... . ..+++.+.+.+||+||++||+++..... . ...|+.+.+.++.+ .+|
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~--~-~~~~~~~~~~l~~l--~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR--A-EEALDAVLAILDRL--KGP 75 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch--H-HHHHHHHHHHHHhc--CCC
Confidence 69999999995532 1 1234455555899999999999643311 0 23444444444443 589
Q ss_pred eEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCC-------------------
Q 011679 226 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP------------------- 286 (479)
Q Consensus 226 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~------------------- 286 (479)
+++++||||...... .+.. .. ........||+|+.++++||+||+...
T Consensus 76 ~~~v~GNHD~~~~~~--------~~~~-~~----~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T cd07396 76 VHHVLGNHDLYNPSR--------EYLL-LY----TLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNS 142 (267)
T ss_pred EEEecCccccccccH--------hhhh-cc----cccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhc
Confidence 999999999863210 0100 00 001234579999999999999999531
Q ss_pred ---------------CCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHc-CccEE
Q 011679 287 ---------------FVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDVV 350 (479)
Q Consensus 287 ---------------~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~Vdlv 350 (479)
.....+|++||+++|++... ...++||++|+|++...... ......++.+.++++++ +|+++
T Consensus 143 ~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v 220 (267)
T cd07396 143 NLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKAC 220 (267)
T ss_pred hhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEE
Confidence 02347999999999998532 23568999999987654311 11112356788999995 89999
Q ss_pred EecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCC
Q 011679 351 FAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGG 394 (479)
Q Consensus 351 lsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG 394 (479)
||||+|.++... .+|+.|+++|+-.
T Consensus 221 ~~GH~H~~~~~~-------------------~~gi~~~~~~a~~ 245 (267)
T cd07396 221 ISGHDHEGGYAQ-------------------RHGIHFLTLEGMV 245 (267)
T ss_pred EcCCcCCCCccc-------------------cCCeeEEEechhh
Confidence 999999986432 2567788887654
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.88 E-value=1.5e-21 Score=186.43 Aligned_cols=189 Identities=16% Similarity=0.198 Sum_probs=122.7
Q ss_pred EEEEecCCCCCCcHH--------HHHHHHHhCCCEEEEcCcccccCccc---ccccchhhhHHHHHHHhhhc--cCCeEE
Q 011679 162 FGIIGDLGQTYNSLS--------TLEHYMESGAQTVLFLGDLSYADRYQ---FIDVGVRWDSWGRFVERSAA--YQPWIW 228 (479)
Q Consensus 162 f~~~gD~~~~~~~~~--------~l~~i~~~~pd~vl~~GD~~y~~~~~---~~~~~~~~~~~~~~~~~~~~--~~P~~~ 228 (479)
|++++|+|.+....+ .++.+.+.+||+||++||++...... ......+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 789999998753211 23344455999999999999643211 11124567777766655433 589999
Q ss_pred cCCCcccccccCCCcc-ccccccccccccCcCCCCCCCCcEEEE--EeCCEEEEEEcCCCC----------CCCChHHHH
Q 011679 229 SAGNHEIEYMTYMGEV-VPFKSYLHRYPTPHLASKSSSPLWYAI--RRASAHIIVLSSYSP----------FVKYTPQWE 295 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~yysf--~~g~~~fi~Ldt~~~----------~~~~~~Q~~ 295 (479)
++||||+......... ..|..|...+ + ....+|.+ ..|+++||+|||... .....+|++
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~-~-------~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATG-R-------DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheec-C-------CCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 9999999532221111 1111121111 1 11223333 359999999999632 123589999
Q ss_pred HHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeec
Q 011679 296 WLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRI 364 (479)
Q Consensus 296 WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~ 364 (479)
||++.|++. .+.+++||++|+|+....... ....+ .+.++|++++|+++||||+|.+++..|+
T Consensus 154 wL~~~L~~~--~~~~~~IV~~HhP~~~~~~~~---~~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 154 RLEKELEKS--TNSNYTIWFGHYPTSTIISPS---AKSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHHhc--ccCCeEEEEEcccchhccCCC---cchhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 999999975 345689999999996533211 11222 3899999999999999999999997775
No 13
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.88 E-value=6.4e-21 Score=184.43 Aligned_cols=234 Identities=17% Similarity=0.192 Sum_probs=139.6
Q ss_pred EECCCCCCCCCCeEEEEEecCCCCCC---------c----HHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhH
Q 011679 148 FQTPPKIDPDASYKFGIIGDLGQTYN---------S----LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDS 212 (479)
Q Consensus 148 f~T~p~~~~~~~~~f~~~gD~~~~~~---------~----~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~ 212 (479)
.+|.+.. ..+++|++++|+|.... . .++++++.+. +|||||++||++.... ...++.
T Consensus 5 ~~~~~~~--~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~------~~~~~~ 76 (275)
T PRK11148 5 LTLPLAG--EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS------SEAYQH 76 (275)
T ss_pred cccccCC--CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC------HHHHHH
Confidence 3454432 46899999999996321 1 2234455444 6999999999996421 233444
Q ss_pred HHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCC----C
Q 011679 213 WGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF----V 288 (479)
Q Consensus 213 ~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~----~ 288 (479)
+.+.++.+ ..|+++++||||.... +..+.....+ ...++.+..++++||+||+.... .
T Consensus 77 ~~~~l~~l--~~Pv~~v~GNHD~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~ 138 (275)
T PRK11148 77 FAEGIAPL--RKPCVWLPGNHDFQPA--------MYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGE 138 (275)
T ss_pred HHHHHhhc--CCcEEEeCCCCCChHH--------HHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCE
Confidence 44555544 5899999999998421 0111111111 11233344557999999995421 2
Q ss_pred CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCc--CHHHHHHHHHHHHHc-CccEEEecccccceeeeecc
Q 011679 289 KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFESWFVRY-KVDVVFAGHVHAYERSYRIS 365 (479)
Q Consensus 289 ~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~~~ 365 (479)
.+.+|++||+++|++. +.+..||++|||+...... +.+ .....+++.++++++ +|+++||||+|......
T Consensus 139 l~~~ql~wL~~~L~~~---~~~~~vv~~hH~P~~~~~~-~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~--- 211 (275)
T PRK11148 139 LSEYQLEWLERKLADA---PERHTLVLLHHHPLPAGCA-WLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD--- 211 (275)
T ss_pred eCHHHHHHHHHHHhhC---CCCCeEEEEcCCCCCCCcc-hhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce---
Confidence 3589999999999985 2334667677655443321 111 112346899999998 89999999999854321
Q ss_pred CCcccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecccEEEEEEEE
Q 011679 366 NLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNR 437 (479)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~~ 437 (479)
.+|+.++++++.+..... ..+.+ .......||..+++.++..+..+..+
T Consensus 212 ----------------~~gi~~~~~ps~~~q~~~------~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~ 260 (275)
T PRK11148 212 ----------------WNGRRLLATPSTCVQFKP------HCTNF-TLDTVAPGWRELELHADGSLETEVHR 260 (275)
T ss_pred ----------------ECCEEEEEcCCCcCCcCC------CCCcc-ccccCCCcEEEEEEcCCCcEEEEEEE
Confidence 255667777766543211 01111 11233468999998654444444444
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.83 E-value=6.1e-20 Score=170.59 Aligned_cols=150 Identities=20% Similarity=0.247 Sum_probs=108.3
Q ss_pred eEEEEEecCCCCCCc-----HHHHHHH----HHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh-ccCCeEEc
Q 011679 160 YKFGIIGDLGQTYNS-----LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWS 229 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~-----~~~l~~i----~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v 229 (479)
|||++++|+|..... ...++.+ .+.+||+||++||++..... ..+|+.+.+.++.+. ..+|++++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-----~~~~~~~~~~~~~l~~~~~p~~~~ 75 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-----DAEWEAADKAFARLDKAGIPYSVL 75 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-----HHHHHHHHHHHHHHHHcCCcEEEE
Confidence 689999999986432 1222333 33489999999999975431 356778888888886 57999999
Q ss_pred CCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCC
Q 011679 230 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 309 (479)
Q Consensus 230 ~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~ 309 (479)
+||||. ++.+|+. ...+|++||++.|++. +.
T Consensus 76 ~GNHD~------------------------------------------~~~ld~~----~~~~ql~WL~~~L~~~---~~ 106 (214)
T cd07399 76 AGNHDL------------------------------------------VLALEFG----PRDEVLQWANEVLKKH---PD 106 (214)
T ss_pred CCCCcc------------------------------------------hhhCCCC----CCHHHHHHHHHHHHHC---CC
Confidence 999993 1222221 3479999999999984 34
Q ss_pred CeEEEEeccccccCCCCccCc-----CHHHHHHHHHHHHHc-CccEEEecccccceeeee
Q 011679 310 PWLIVLMHVPIYNSNEAHFME-----GESMRAAFESWFVRY-KVDVVFAGHVHAYERSYR 363 (479)
Q Consensus 310 ~w~Iv~~H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~VdlvlsGH~H~y~r~~~ 363 (479)
+++||++|+|++......... ....++.|.++++++ +|+++||||+|.+.+...
T Consensus 107 ~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 107 RPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred CCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEEE
Confidence 569999999998654322111 123456788999998 799999999999987753
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.77 E-value=2.7e-18 Score=168.15 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=124.7
Q ss_pred EEecCCCCCC---cHHHHHHHHHh--CCCEEEEcCcccccCccccccc-ch--hhhHHHHHHHhhhccCCeEEcCCCccc
Q 011679 164 IIGDLGQTYN---SLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDV-GV--RWDSWGRFVERSAAYQPWIWSAGNHEI 235 (479)
Q Consensus 164 ~~gD~~~~~~---~~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~-~~--~~~~~~~~~~~~~~~~P~~~v~GNHD~ 235 (479)
.+|+.+.... ...+++.+.+. +|||||++||++..+....... .. .+..+.+.++.....+|+++++||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 3555554433 24556777777 8999999999998765422110 01 133444556666678999999999998
Q ss_pred ccccCCC----ccccccccccccc--cCcCCC-CCCCCcEEEEE-eCCEEEEEEcCCCCC-----------CCChHHHHH
Q 011679 236 EYMTYMG----EVVPFKSYLHRYP--TPHLAS-KSSSPLWYAIR-RASAHIIVLSSYSPF-----------VKYTPQWEW 296 (479)
Q Consensus 236 ~~~~~~~----~~~~~~~~~~~~~--~p~~~~-~~~~~~yysf~-~g~~~fi~Ldt~~~~-----------~~~~~Q~~W 296 (479)
....... ....+..+...|. +|.... ....+.||++. .+++++|+|||.... ....+|++|
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~W 201 (296)
T cd00842 122 YPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQW 201 (296)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHH
Confidence 6322111 0111122222222 232111 11235789998 789999999995321 124789999
Q ss_pred HHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcC--ccEEEecccccceeee
Q 011679 297 LREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAYERSY 362 (479)
Q Consensus 297 L~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y~r~~ 362 (479)
|+++|+++++.. ..++|++|+|+....... .....+++.+++++|. |.++|+||+|..+-..
T Consensus 202 L~~~L~~a~~~~-~~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~ 265 (296)
T cd00842 202 LEDELQEAEQAG-EKVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDEFRV 265 (296)
T ss_pred HHHHHHHHHHCC-CeEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecccccceEEE
Confidence 999999864333 457889999997644321 1355788999999997 7789999999976543
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.73 E-value=2.9e-18 Score=153.11 Aligned_cols=189 Identities=21% Similarity=0.231 Sum_probs=99.5
Q ss_pred eEEEEEecCCCCCCcH----HHHH-HHHHhCCCEEEEcCcccccCcccccccchhhhHHH-HHHHhhhccCCeEEcCCCc
Q 011679 160 YKFGIIGDLGQTYNSL----STLE-HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWG-RFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~----~~l~-~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~~~v~GNH 233 (479)
|||+++||+|...... ..+. ...+.++|+||++||+++..... ..+.... ..........|+++++|||
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPS-----EEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHH-----HHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeecccccccccc-----ccchhhhccchhhhhcccccccccccc
Confidence 6999999999986543 2222 23334999999999999865431 1111111 1233445678999999999
Q ss_pred ccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCh---HHHHHHHHHHhhccCCCCC
Q 011679 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYT---PQWEWLREELKKVDREKTP 310 (479)
Q Consensus 234 D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~---~Q~~WL~~~L~~~~~~~~~ 310 (479)
|+......................... ...+......................... .+..|+...+.. ...+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYY--SYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDD 150 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEE--CTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEES
T ss_pred ccceecccccccccccccccccccccc--ccCcceeeecccccccccccccccccccccchhccccccccccc---cccc
Confidence 996421110000000000000000000 00000011112222222222111111122 233333333333 4567
Q ss_pred eEEEEeccccccCCCCccC--cCHHHHHHHHHHHHHcCccEEEecccccc
Q 011679 311 WLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAGHVHAY 358 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~VdlvlsGH~H~y 358 (479)
++||++|+|++........ .....++.+..++++++|+++|+||+|.|
T Consensus 151 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 151 PVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999999999977653211 11235678899999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.71 E-value=7.1e-17 Score=153.41 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=105.9
Q ss_pred HHHHHHHh-CCCEEEEcCcccccCcccccccchhhhH-HHHHHHhh---hccCCeEEcCCCcccccccCCCccccccccc
Q 011679 177 TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYL 251 (479)
Q Consensus 177 ~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~ 251 (479)
.+..+.+. +||+||++||++..... .. ..+|.. +.++.+.+ ....|++.++||||+...... .......|.
T Consensus 36 ~~~~~~~~l~PD~vv~lGDL~d~G~~-~~--~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~-~~~~~~rf~ 111 (257)
T cd08163 36 NWRYMQKQLKPDSTIFLGDLFDGGRD-WA--DEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGV-VLPVRQRFE 111 (257)
T ss_pred HHHHHHHhcCCCEEEEecccccCCee-Cc--HHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCC-CHHHHHHHH
Confidence 34445444 89999999999875321 11 344532 33333333 224799999999998542211 111123344
Q ss_pred cccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCC-----CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCC
Q 011679 252 HRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA 326 (479)
Q Consensus 252 ~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~ 326 (479)
..|. ..++.+++|+++||+||+.... ....+|.+||++.|+... ....+||++|+|+|.....
T Consensus 112 ~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~p~ILl~H~Plyr~~~~ 179 (257)
T cd08163 112 KYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKV--KSKPRILLTHVPLYRPPNT 179 (257)
T ss_pred HHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccC--CCCcEEEEeccccccCCCC
Confidence 4442 2357899999999999995322 234679999999988642 3345899999999865432
Q ss_pred ccC---c---------CHH----H-HHHHHHHHHHcCccEEEecccccceee
Q 011679 327 HFM---E---------GES----M-RAAFESWFVRYKVDVVFAGHVHAYERS 361 (479)
Q Consensus 327 ~~~---~---------~~~----~-~~~l~~l~~~~~VdlvlsGH~H~y~r~ 361 (479)
.++ + +.. + .+.-..|+++.++.+||+||+|.|=.+
T Consensus 180 ~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 180 SCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred CCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 111 0 000 1 123346677779999999999998554
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.69 E-value=2.8e-16 Score=147.97 Aligned_cols=176 Identities=20% Similarity=0.220 Sum_probs=107.2
Q ss_pred EEEEecCCCCC--------Cc---HHHHHHHHHh------CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-c
Q 011679 162 FGIIGDLGQTY--------NS---LSTLEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y 223 (479)
Q Consensus 162 f~~~gD~~~~~--------~~---~~~l~~i~~~------~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~ 223 (479)
+.+++|+|... .. .+.++.+.+. +||+||++||++..... +.+.+.++.+.+ .
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~---------~~~~~~l~~l~~l~ 71 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL---------EEAKLDLAWIDALP 71 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh---------HHHHHHHHHHHhCC
Confidence 35789999763 11 3445555554 99999999999843211 222233332322 3
Q ss_pred CCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCC----CC------------
Q 011679 224 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS----PF------------ 287 (479)
Q Consensus 224 ~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~----~~------------ 287 (479)
.|+++++||||+... .. ..+.+.+ +..+.... ...++.++++.|++++... ..
T Consensus 72 ~~v~~V~GNHD~~~~----~~---~~~~~~l--~~~~~~~~--~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 140 (232)
T cd07393 72 GTKVLLKGNHDYWWG----SA---SKLRKAL--EESRLALL--FNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEED 140 (232)
T ss_pred CCeEEEeCCccccCC----CH---HHHHHHH--HhcCeEEe--ccCcEEECCEEEEEEEeeCCCCCccccccccccchhH
Confidence 479999999997311 00 1111111 11000000 0234556788899876311 10
Q ss_pred -CCChHHHHHHHHHHhhccCCC-CCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeecc
Q 011679 288 -VKYTPQWEWLREELKKVDREK-TPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 365 (479)
Q Consensus 288 -~~~~~Q~~WL~~~L~~~~~~~-~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~ 365 (479)
.....|+.||++.|++..... ..++|+++|+|++..... .+.+..++++++++++|+||+|..++..|+.
T Consensus 141 ~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~ 212 (232)
T cd07393 141 EKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICVYGHLHGVGRDRAIN 212 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEEECCCCCCccccccc
Confidence 012569999999999753222 247999999998765421 2356788889999999999999999887763
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.67 E-value=1.1e-15 Score=140.67 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=98.8
Q ss_pred CeEEEEEecCCCCCCc---------HH---HHHHHH-HhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cC
Q 011679 159 SYKFGIIGDLGQTYNS---------LS---TLEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQ 224 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~~---------~~---~l~~i~-~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 224 (479)
.+||++++|+|..... .. .+..+. +.+||+||++||+++...... ..+..+.+.++.+.. .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~----~~~~~~~~~~~~l~~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND----NSTSALDKAVSPMIDRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch----HHHHHHHHHHHHHHHcCC
Confidence 6899999999986532 12 233333 338999999999998654311 124555666666644 68
Q ss_pred CeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhc
Q 011679 225 PWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKV 304 (479)
Q Consensus 225 P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~ 304 (479)
|+++++||||.. .-....|++||+++|++.
T Consensus 78 p~~~~~GNHD~~--------------------------------------------------g~l~~~ql~wL~~~l~~~ 107 (199)
T cd07383 78 PWAATFGNHDGY--------------------------------------------------DWIRPSQIEWFKETSAAL 107 (199)
T ss_pred CEEEECccCCCC--------------------------------------------------CCCCHHHHHHHHHHHHHH
Confidence 999999999910 012368999999999985
Q ss_pred c--CCCCCeEEEEeccccccCCCCc---------cCc---CHHHHHHHHH-HHHHcCccEEEecccccceeee
Q 011679 305 D--REKTPWLIVLMHVPIYNSNEAH---------FME---GESMRAAFES-WFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 305 ~--~~~~~w~Iv~~H~P~~~~~~~~---------~~~---~~~~~~~l~~-l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
. +....+.++++|+|+....... ..+ .......+.. +.+..+|+++||||+|.++...
T Consensus 108 ~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 108 KKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred hhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 2 2234679999999986543210 001 1112233444 4466899999999999987654
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.65 E-value=1.9e-15 Score=137.72 Aligned_cols=167 Identities=13% Similarity=0.097 Sum_probs=101.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccCC
Q 011679 162 FGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYM 241 (479)
Q Consensus 162 f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~ 241 (479)
|+++||+|.+...... ..+.+.++|+||++||++..... .....+ +.++. ...|+++++||||.....
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~------~~~~~~-~~l~~--~~~p~~~v~GNHD~~~~~-- 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK------EAAVEI-NLLLA--IGVPVLAVPGNCDTPEIL-- 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH------HHHHHH-HHHHh--cCCCEEEEcCCCCCHHHH--
Confidence 5789999987543333 33444589999999999964321 111111 22322 267999999999974210
Q ss_pred CccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCC------CCCChHHHHHHHHHHhhccCCCCCeEEEE
Q 011679 242 GEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP------FVKYTPQWEWLREELKKVDREKTPWLIVL 315 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~------~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~ 315 (479)
......... ..+ ..+.++++.|+++++... .....+|++|+ +.|.. ...+.+|++
T Consensus 69 ------~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~ilv 129 (188)
T cd07392 69 ------GLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLILV 129 (188)
T ss_pred ------HhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEEE
Confidence 000000000 011 234578899999987421 12356899998 44544 334568999
Q ss_pred eccccccCCCCccCcC-HHHHHHHHHHHHHcCccEEEecccccce
Q 011679 316 MHVPIYNSNEAHFMEG-ESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 316 ~H~P~~~~~~~~~~~~-~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
+|+|++.......... ....+.+.+++++++++++||||+|.-.
T Consensus 130 ~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 130 THAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred ECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 9999976311111111 1124678888999999999999999854
No 21
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.64 E-value=4.2e-15 Score=148.60 Aligned_cols=94 Identities=13% Similarity=0.241 Sum_probs=71.7
Q ss_pred CCcEEEEE-eCCEEEEEEcCCCCC-----CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCcc-----CcCHH
Q 011679 265 SPLWYAIR-RASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF-----MEGES 333 (479)
Q Consensus 265 ~~~yysf~-~g~~~fi~Ldt~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~-----~~~~~ 333 (479)
...||+|+ .++++||+|||.... ....+|++||+++|++ ...+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc---CCCCCEEEEECCCCcccccccccccccccccc
Confidence 45699999 899999999996431 2458999999999997 4456799999999986543110 01122
Q ss_pred HHHHHHHHHHHc-CccEEEecccccceee
Q 011679 334 MRAAFESWFVRY-KVDVVFAGHVHAYERS 361 (479)
Q Consensus 334 ~~~~l~~l~~~~-~VdlvlsGH~H~y~r~ 361 (479)
..++|.++|+++ +|.++||||+|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 356899999998 7999999999986543
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.61 E-value=8.2e-15 Score=138.86 Aligned_cols=176 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred EEEEEecCCCCCCc---HH----HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCc
Q 011679 161 KFGIIGDLGQTYNS---LS----TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 161 ~f~~~gD~~~~~~~---~~----~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 233 (479)
||+++||+|..... .. .++.+.+.++|+||++||++... .+...+.+.+..+ ...|++.++|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~--------~~~~~~~~~l~~~-~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF--------QRSLPFIEKLQEL-KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch--------hhHHHHHHHHHHh-cCCcEEEECCCC
Confidence 58999999975322 22 33445556999999999999531 1112233333322 458999999999
Q ss_pred ccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCC--------------------------C
Q 011679 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP--------------------------F 287 (479)
Q Consensus 234 D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~--------------------------~ 287 (479)
|+..... +..+...+. + ....+.++.+..++++|++++...+ .
T Consensus 72 D~~~~~~------~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (239)
T TIGR03729 72 DMLKDLT------YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKR 140 (239)
T ss_pred CCCCCCC------HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCC
Confidence 9741110 011111110 0 0011223333346778888773111 1
Q ss_pred C-----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCC------CccCcC--HHHHHHHHHHHHHcCccEEEecc
Q 011679 288 V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE------AHFMEG--ESMRAAFESWFVRYKVDVVFAGH 354 (479)
Q Consensus 288 ~-----~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~------~~~~~~--~~~~~~l~~l~~~~~VdlvlsGH 354 (479)
. ...+|++||++.|++.. .+.+|+++|+|+..... ..+... ......+.+++++++|+++||||
T Consensus 141 ~~~~~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH 217 (239)
T TIGR03729 141 PMSDPERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGH 217 (239)
T ss_pred CCChHHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECC
Confidence 0 13678999999998752 23489999999854211 111110 11146788999999999999999
Q ss_pred cccce
Q 011679 355 VHAYE 359 (479)
Q Consensus 355 ~H~y~ 359 (479)
+|.-.
T Consensus 218 ~H~~~ 222 (239)
T TIGR03729 218 LHRRF 222 (239)
T ss_pred ccCCC
Confidence 99854
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.56 E-value=2.6e-14 Score=134.05 Aligned_cols=198 Identities=16% Similarity=0.038 Sum_probs=112.2
Q ss_pred CeEEEEEecCCCCCCc-----HHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCc
Q 011679 159 SYKFGIIGDLGQTYNS-----LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~~-----~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 233 (479)
++||+++||+|..... .+.++.+.+.+||+|+++||+++..... . +.+.+.++.+....|+++++|||
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~-----~--~~~~~~l~~l~~~~~v~~v~GNH 73 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDV-----L--ELLLELLKKLKAPLGVYAVLGNH 73 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchh-----h--HHHHHHHhccCCCCCEEEECCCc
Confidence 4799999999987542 2234444555899999999999753321 1 34556666666678999999999
Q ss_pred ccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEE
Q 011679 234 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 313 (479)
Q Consensus 234 D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~I 313 (479)
|+...... .+........+. ...+.+..++.++..+...--.. .....+++.+.+++. .+...+|
T Consensus 74 D~~~~~~~----~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~~~~~~~--~~~~~~I 138 (223)
T cd07385 74 DYYSGDEE----NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVDD----GLGRRPDLEKALKGL--DEDDPNI 138 (223)
T ss_pred ccccCchH----HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEeccC----ccccCCCHHHHHhCC--CCCCCEE
Confidence 98642110 000011111111 01233455556554443332111 112334566666654 3455789
Q ss_pred EEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCc---ccccCCcccccCCCCCCeEEEe
Q 011679 314 VLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLH---YNISSGDCFPVPDKSAPVYITV 390 (479)
Q Consensus 314 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~---~~~~~g~~~~~~~~~~~~~i~~ 390 (479)
++.|.|.+. ..+.+.++|++++||+|..|...|..... .....-....+..++..+||..
T Consensus 139 ~l~H~P~~~-----------------~~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~ 201 (223)
T cd07385 139 LLAHQPDTA-----------------EEAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYRKGGSQLYVSR 201 (223)
T ss_pred EEecCCChh-----------------HHhcccCccEEEeccCCCCEEeccccccccchhhcCcccceEEEECCEEEEEcC
Confidence 999997641 11256799999999999999776643221 0000000011223455777777
Q ss_pred CCCCC
Q 011679 391 GDGGN 395 (479)
Q Consensus 391 G~gG~ 395 (479)
|.|..
T Consensus 202 G~G~~ 206 (223)
T cd07385 202 GLGTW 206 (223)
T ss_pred CccCC
Confidence 76654
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.54 E-value=7.9e-14 Score=121.43 Aligned_cols=116 Identities=21% Similarity=0.238 Sum_probs=83.7
Q ss_pred EEEEecCCCCCCcHH-----------HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc-CCeEEc
Q 011679 162 FGIIGDLGQTYNSLS-----------TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWS 229 (479)
Q Consensus 162 f~~~gD~~~~~~~~~-----------~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v 229 (479)
|++++|+|.+..... .++.+.+.++|+|+++||+++... ...|+.+.++++.+... .|++.+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL------PEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC------HHHHHHHHHHHHHccccCCcEEEe
Confidence 578999998754211 123333449999999999997532 34556667777777553 699999
Q ss_pred CCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCC
Q 011679 230 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 309 (479)
Q Consensus 230 ~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~ 309 (479)
+||||.
T Consensus 75 ~GNHD~-------------------------------------------------------------------------- 80 (144)
T cd07400 75 PGNHDV-------------------------------------------------------------------------- 80 (144)
T ss_pred CCCCeE--------------------------------------------------------------------------
Confidence 999995
Q ss_pred CeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceee
Q 011679 310 PWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 361 (479)
Q Consensus 310 ~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 361 (479)
|+++|+|++...... ......++.+.+++.+++++++||||+|.....
T Consensus 81 ---iv~~Hhp~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 81 ---IVVLHHPLVPPPGSG-RERLLDAGDALKLLAEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred ---EEEecCCCCCCCccc-cccCCCHHHHHHHHHHcCCCEEEECCCCCcCee
Confidence 889999997754421 111114567899999999999999999996544
No 25
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=134.53 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=111.6
Q ss_pred eEEEEEecCCCC--CC-cHHH----HHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCC
Q 011679 160 YKFGIIGDLGQT--YN-SLST----LEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (479)
Q Consensus 160 ~~f~~~gD~~~~--~~-~~~~----l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 232 (479)
++|+.++|.|.. .. .... ++.+...+||+||++||++.. +. ...++...++++......|++++|||
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGN 74 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGN 74 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCC
Confidence 589999999998 22 2222 344444589999999999975 22 23344455566644456789999999
Q ss_pred cccccccCCCccccccccccccccCcCCCCCCCCcEEEEEe-CCEEEEEEcCCCCC----CCChHHHHHHHHHHhhccCC
Q 011679 233 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF----VKYTPQWEWLREELKKVDRE 307 (479)
Q Consensus 233 HD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~-g~~~fi~Ldt~~~~----~~~~~Q~~WL~~~L~~~~~~ 307 (479)
||...... ..+...+... ...+..... ++++++.+|+.... ..+..|++||++.|+.....
T Consensus 75 HD~~~~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~ 140 (301)
T COG1409 75 HDARVVNG-------EAFSDQFFNR-------YAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPER 140 (301)
T ss_pred CcCCchHH-------HHhhhhhccc-------CcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccc
Confidence 99853210 1111111100 001111112 67899999996542 24689999999999985322
Q ss_pred CCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcC--ccEEEecccccc
Q 011679 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAY 358 (479)
Q Consensus 308 ~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y 358 (479)
....+|+++|||+.................+..++..++ |+++|+||.|..
T Consensus 141 ~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 141 AKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred cCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 112467777777765443322222223346667777888 999999999985
No 26
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.51 E-value=5.4e-13 Score=123.55 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=104.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHH-HHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cCCeEEcCCCccc
Q 011679 158 ASYKFGIIGDLGQTYNSLSTLEH-YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEI 235 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~~~~~l~~-i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~ 235 (479)
...|++++||+|.+....+.+.. +.+.++|+||++||++.... ..+.+.++++.+.. ..|+++++||||.
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~--------~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAA--------KSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCC--------CHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 46789999999976544333333 33348999999999997431 11344455555533 4799999999996
Q ss_pred ccccCCCccccccccccccccCcCCCCCCCCcEEEEEe-CCEEEEEEcCCCCC--CCChHHH----HHHHH-HHhhccCC
Q 011679 236 EYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF--VKYTPQW----EWLRE-ELKKVDRE 307 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~-g~~~fi~Ldt~~~~--~~~~~Q~----~WL~~-~L~~~~~~ 307 (479)
....... ..|......|.. .. ....+ ..+ |++.|+.|+....+ ....+|. .||.+ .|+.....
T Consensus 75 ~v~~~l~-----~~~~~~~~~p~~-~~-lh~~~--~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~ 145 (224)
T cd07388 75 PLWEYLR-----EAYNAELVHPEI-RN-VHETF--AFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL 145 (224)
T ss_pred HHHHHHH-----HHhcccccCccc-ee-cCCCe--EEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC
Confidence 3100000 011111111210 00 11122 334 66999999975433 2344542 56433 22222112
Q ss_pred CCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccc
Q 011679 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVH 356 (479)
Q Consensus 308 ~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H 356 (479)
..+..|+++|+|++..+..+ .-...+..++++++..++||||+|
T Consensus 146 ~~~~~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 146 KDYRKVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred CCCCeEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 34468999999999874222 123567889999999999999999
No 27
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.47 E-value=2.3e-13 Score=128.11 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=110.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHH----HhCCCEEEEcCcccccCccc--------------------ccccchhhhHH--H
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYM----ESGAQTVLFLGDLSYADRYQ--------------------FIDVGVRWDSW--G 214 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~----~~~pd~vl~~GD~~y~~~~~--------------------~~~~~~~~~~~--~ 214 (479)
||++.||.+...........+. +.+||++|++||++|++... ..+++.+|..+ .
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5899999988877766777665 56999999999999998631 11122233333 1
Q ss_pred HHHHhhhccCCeEEcCCCcccccccCCCcc-------------ccccccccccccCcCCCC--CCCCcEEEEEeCCE-EE
Q 011679 215 RFVERSAAYQPWIWSAGNHEIEYMTYMGEV-------------VPFKSYLHRYPTPHLASK--SSSPLWYAIRRASA-HI 278 (479)
Q Consensus 215 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~-------------~~~~~~~~~~~~p~~~~~--~~~~~yysf~~g~~-~f 278 (479)
..++.+.+++|++.+|+|||+..+...... ....+|......+..... .....|+++.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 446777888999999999999865443110 111234444433322221 34568999999996 99
Q ss_pred EEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCcc--EEEecccc
Q 011679 279 IVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD--VVFAGHVH 356 (479)
Q Consensus 279 i~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd--lvlsGH~H 356 (479)
++||+.... ..|......|+++..++.+.++. ++|||++|
T Consensus 161 ~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999997653 24455667788888886665433 88999999
Q ss_pred cceee
Q 011679 357 AYERS 361 (479)
Q Consensus 357 ~y~r~ 361 (479)
..+-.
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 86554
No 28
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.47 E-value=3e-13 Score=120.73 Aligned_cols=144 Identities=15% Similarity=0.243 Sum_probs=86.1
Q ss_pred EEEEecCCCCCCcHHHH--HHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccccccc
Q 011679 162 FGIIGDLGQTYNSLSTL--EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (479)
Q Consensus 162 f~~~gD~~~~~~~~~~l--~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 239 (479)
|+++||+|.+....... +.+.+.++|+++++||+++.... ..+...........|+++++||||+...
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~---------~~~~~~~~~~~~~~~v~~v~GNHD~~~~- 70 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDA---------PRFAPLLLALKGFEPVIYVPGNHEFYVR- 70 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcch---------HHHHHHHHhhcCCccEEEeCCCcceEEE-
Confidence 57899999876543322 22334489999999999964321 1122223333456899999999998410
Q ss_pred CCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccc
Q 011679 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P 319 (479)
+ .. ...|+.+.. ...++.+|+.++++ +.+||++|||
T Consensus 71 ----------~---~G---------~~~w~~~~~---------------~~~~~~~~~~~d~~-------~~~vv~~Hhp 106 (166)
T cd07404 71 ----------I---IG---------TTLWSDISL---------------FGEAAARMRMNDFR-------GKTVVVTHHA 106 (166)
T ss_pred ----------E---Ee---------eecccccCc---------------cchHHHHhCCCCCC-------CCEEEEeCCC
Confidence 0 00 011222211 11234444444433 3489999999
Q ss_pred cccCCCCc-c---CcCHHHHHHHHHHHHHcCccEEEecccccce
Q 011679 320 IYNSNEAH-F---MEGESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 320 ~~~~~~~~-~---~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
+....... . ......++.+..++++++|++++|||+|...
T Consensus 107 P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 107 PSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccc
Confidence 98754321 1 1112345567788888999999999999864
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.46 E-value=3.9e-13 Score=125.94 Aligned_cols=186 Identities=16% Similarity=0.100 Sum_probs=103.0
Q ss_pred EEEEEecCCCCCCc------------HHHHH----HHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh-cc
Q 011679 161 KFGIIGDLGQTYNS------------LSTLE----HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AY 223 (479)
Q Consensus 161 ~f~~~gD~~~~~~~------------~~~l~----~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~ 223 (479)
||++++|+|.+... ..+++ .+.+.++|+||++||++...... ...+..+.+.++.+. ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPS----PEALELLIEALRRLKEAG 76 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCC----HHHHHHHHHHHHHHHHCC
Confidence 68999999987431 12233 33345999999999998654311 223455556666664 47
Q ss_pred CCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhh
Q 011679 224 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKK 303 (479)
Q Consensus 224 ~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~ 303 (479)
+|+++++||||....... ......+.. +..-.............++.+++.|+.++..... ....+.++++..+..
T Consensus 77 ~~v~~~~GNHD~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~ 152 (223)
T cd00840 77 IPVFIIAGNHDSPSRLGA--LSPLLALSG-LHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRP 152 (223)
T ss_pred CCEEEecCCCCCcccccc--ccchHhhCc-EEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhc
Confidence 899999999998642111 000000000 0000000000111222334456788888754321 123344444455444
Q ss_pred ccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEeccccccee
Q 011679 304 VDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 360 (479)
Q Consensus 304 ~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 360 (479)
. .....+|+++|.|+.......... .......+...++|++++||.|..+.
T Consensus 153 ~--~~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 153 L--DPDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred c--CCCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCee
Confidence 3 345679999999986544321110 12234455678899999999999754
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.46 E-value=2.1e-12 Score=124.42 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=107.6
Q ss_pred CCeEEEEEecCCCCCC-cH----HHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCC
Q 011679 158 ASYKFGIIGDLGQTYN-SL----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~-~~----~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 232 (479)
.++||+++||+|.... .. +.++.+.+.+||+|+++||+++.+. ...++.+.+.++.+.+..|+++++||
T Consensus 48 ~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~------~~~~~~~~~~L~~L~~~~pv~~V~GN 121 (271)
T PRK11340 48 APFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM------PLNFSAFSDVLSPLAECAPTFACFGN 121 (271)
T ss_pred CCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc------cccHHHHHHHHHHHhhcCCEEEecCC
Confidence 4699999999998632 12 2233444559999999999986221 12234566777777767899999999
Q ss_pred cccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCC--EEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCC
Q 011679 233 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRAS--AHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTP 310 (479)
Q Consensus 233 HD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~--~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~ 310 (479)
||+...... ...+....+... .....+....+..++ +.++++|.... + ... ..+.++ + ..
T Consensus 122 HD~~~~~~~--~~~~~~~l~~~g-----i~lL~n~~~~i~~~~~~i~i~G~~d~~~-~--~~~---~~~~~~----~-~~ 183 (271)
T PRK11340 122 HDRPVGTEK--NHLIGETLKSAG-----ITVLFNQATVIATPNRQFELVGTGDLWA-G--QCK---PPPASE----A-NL 183 (271)
T ss_pred CCcccCccc--hHHHHHHHHhcC-----cEEeeCCeEEEeeCCcEEEEEEecchhc-c--CCC---hhHhcC----C-CC
Confidence 998532110 000111111111 011123444555543 66777764211 1 101 112222 2 23
Q ss_pred eEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcc------cccCCcccccCCCCC
Q 011679 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHY------NISSGDCFPVPDKSA 384 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~------~~~~g~~~~~~~~~~ 384 (479)
.+|++.|.|-.- +.+.+.++|++||||+|.=|-..|..+..+ ....| .+...+.
T Consensus 184 ~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~~~~~~~~~~~~~~~~G---~~~~~~~ 243 (271)
T PRK11340 184 PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAG---LNAFGER 243 (271)
T ss_pred CeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccccCccccccccCcccCC---cEEeCCc
Confidence 589999999641 223467899999999999776656422111 01112 1223455
Q ss_pred CeEEEeCCCC
Q 011679 385 PVYITVGDGG 394 (479)
Q Consensus 385 ~~~i~~G~gG 394 (479)
.+||..|-|.
T Consensus 244 ~l~Vs~G~G~ 253 (271)
T PRK11340 244 QIYTTRGVGS 253 (271)
T ss_pred EEEEeCCccC
Confidence 6777777664
No 31
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.45 E-value=1.6e-13 Score=100.40 Aligned_cols=62 Identities=45% Similarity=0.822 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCCCCCCCCCCCCCCCCCccceeeccccEEEEEEecccEEEEEEEEcCCCceeeeeeE
Q 011679 383 SAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSF 449 (479)
Q Consensus 383 ~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~t~~~~~~~~~~~g~~~~~D~f 449 (479)
++|+||++|+||+.+ ..+..++|+|++++...|||++|+|.|.|+|.|+|+++.+|++ .|+|
T Consensus 1 kapVhiv~G~aG~~l---~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v--~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGL---DPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSV--LDEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T---CEE-
T ss_pred CCCEEEEECcCCCCc---ccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcE--ecCC
Confidence 479999999999943 3466778999999999999999999999999999999988986 7987
No 32
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.40 E-value=6e-12 Score=124.83 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=64.2
Q ss_pred CcEEEEE-eCCE--EEEEEcCCCCC-----------CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCc---c
Q 011679 266 PLWYAIR-RASA--HIIVLSSYSPF-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAH---F 328 (479)
Q Consensus 266 ~~yysf~-~g~~--~fi~Ldt~~~~-----------~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~---~ 328 (479)
..||+|+ .|++ ++|+||+.... ....+|++||+++|++.. .+.+++|+++|+|+.+..... +
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhhh
Confidence 4599999 5855 99999986411 135899999999999863 245778888888887522210 1
Q ss_pred C----------cCHHHHHHHHHHHHHc-CccEEEeccccc
Q 011679 329 M----------EGESMRAAFESWFVRY-KVDVVFAGHVHA 357 (479)
Q Consensus 329 ~----------~~~~~~~~l~~l~~~~-~VdlvlsGH~H~ 357 (479)
. .....-.+|..+|.+| +|.++||||.|.
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHr 410 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHL 410 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCccc
Confidence 1 0011124789999998 688999999997
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.37 E-value=6.2e-11 Score=112.05 Aligned_cols=194 Identities=22% Similarity=0.294 Sum_probs=105.9
Q ss_pred CCCeEEEEEecCCCCCC-----------------c---HHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHH
Q 011679 157 DASYKFGIIGDLGQTYN-----------------S---LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGR 215 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~-----------------~---~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~ 215 (479)
.++||++.++|+|.+.. . ...+.++.+. +||||+++||+++.... +..-..+.+
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t-----~Da~~sl~k 125 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST-----QDAATSLMK 125 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc-----HhHHHHHHH
Confidence 47899999999998643 1 1224444444 99999999999986432 111234556
Q ss_pred HHHhhh-ccCCeEEcCCCcccccccCCCccccccccccccccCcCCC---CCCCCcEEEEEeCC----------------
Q 011679 216 FVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS---KSSSPLWYAIRRAS---------------- 275 (479)
Q Consensus 216 ~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~yysf~~g~---------------- 275 (479)
.+++.. .++||.+++||||-...-...+. ..+.. .+|..-+ ......+.-..+|+
T Consensus 126 AvaP~I~~~IPwA~~lGNHDdes~ltr~ql---~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~ 200 (379)
T KOG1432|consen 126 AVAPAIDRKIPWAAVLGNHDDESDLTRLQL---MKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENK 200 (379)
T ss_pred HhhhHhhcCCCeEEEecccccccccCHHHH---HHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccccC
Confidence 677664 48999999999998643111000 01110 1222110 00011111111111
Q ss_pred --EEEEEEcCCCC---------CC-CChHHHHHHHHHHhhc---cCCCCC-eEEEEeccccccCCCCc--------cCcC
Q 011679 276 --AHIIVLSSYSP---------FV-KYTPQWEWLREELKKV---DREKTP-WLIVLMHVPIYNSNEAH--------FMEG 331 (479)
Q Consensus 276 --~~fi~Ldt~~~---------~~-~~~~Q~~WL~~~L~~~---~~~~~~-w~Iv~~H~P~~~~~~~~--------~~~~ 331 (479)
..+++||+..+ |+ ....|.+||+..-.+. +..-.| --+++.|.|+-.-..-. ..++
T Consensus 201 sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~ 280 (379)
T KOG1432|consen 201 SVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEG 280 (379)
T ss_pred ceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecc
Confidence 34667776432 11 2467999999877331 111122 35788999974211100 0111
Q ss_pred ---HHHHHHHHHHHH-HcCccEEEeccccccee
Q 011679 332 ---ESMRAAFESWFV-RYKVDVVFAGHVHAYER 360 (479)
Q Consensus 332 ---~~~~~~l~~l~~-~~~VdlvlsGH~H~y~r 360 (479)
......+...|. +.+|+.|+|||+|+..-
T Consensus 281 ~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDf 313 (379)
T KOG1432|consen 281 VSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDF 313 (379)
T ss_pred ccccccccHHHHHHHhccCcceEEeccccccce
Confidence 111234555565 78999999999998533
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.32 E-value=1.6e-11 Score=103.89 Aligned_cols=116 Identities=25% Similarity=0.298 Sum_probs=82.5
Q ss_pred EEEecCCCCCCcHHHHH---HHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccccccc
Q 011679 163 GIIGDLGQTYNSLSTLE---HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 239 (479)
Q Consensus 163 ~~~gD~~~~~~~~~~l~---~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 239 (479)
+++||+|.......... ...+.++|+||++||+++.... ..+..+...........|++.++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPD------PEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCC------chHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 36899998866544432 3334499999999999986442 222222223333455789999999999
Q ss_pred CCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccc
Q 011679 240 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P 319 (479)
|+++|.|
T Consensus 70 -------------------------------------------------------------------------i~~~H~~ 76 (131)
T cd00838 70 -------------------------------------------------------------------------ILLTHGP 76 (131)
T ss_pred -------------------------------------------------------------------------EEEeccC
Confidence 8899999
Q ss_pred cccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeee
Q 011679 320 IYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
++.............+..+..++.+.+++++|+||.|.+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 77 PYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred CCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 8766543222222246788889999999999999999998875
No 35
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.25 E-value=7.2e-11 Score=103.93 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=88.3
Q ss_pred eEEEEEecCCCCCCcH-HHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccc
Q 011679 160 YKFGIIGDLGQTYNSL-STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 238 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~-~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~ 238 (479)
|||+++||+|...... +.++.+ .++|+|+++||++.. ..+.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------~~~~~~~~~~----~~~~v~GNHD~~~- 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------EEVLELLRDI----PVYVVRGNHDNWA- 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------HHHHHHHHHH----EEEEE--CCHSTH-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------HHHHHHHhcC----CEEEEeCCccccc-
Confidence 7999999999965432 233434 479999999999841 3334444443 8999999999632
Q ss_pred cCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEecc
Q 011679 239 TYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHV 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~ 318 (479)
+...... .. +.+.+.. .-..+.|+++|.
T Consensus 62 -----------~~~~~~~---------~~-----------------------------~~~~~~~---~~~~~~i~~~H~ 89 (156)
T PF12850_consen 62 -----------FPNENDE---------EY-----------------------------LLDALRL---TIDGFKILLSHG 89 (156)
T ss_dssp -----------HHSEECT---------CS-----------------------------SHSEEEE---EETTEEEEEESS
T ss_pred -----------chhhhhc---------cc-----------------------------cccceee---eecCCeEEEECC
Confidence 1100000 00 1111110 112457888888
Q ss_pred ccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCCCCCC
Q 011679 319 PIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEG 398 (479)
Q Consensus 319 P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~ 398 (479)
+.+.... ..+.+..++...+++++|+||.|..+.... +++.++..|+-+....
T Consensus 90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~-------------------~~~~~~~~Gs~~~~~~ 142 (156)
T PF12850_consen 90 HPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFKI-------------------GGIHVINPGSIGGPRH 142 (156)
T ss_dssp TSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEEE-------------------TTEEEEEE-GSSS-SS
T ss_pred CCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEEE-------------------CCEEEEECCcCCCCCC
Confidence 7765331 123455777799999999999999766541 4467787777554321
Q ss_pred CCCCCCCCCCCccceeeccccEEEEEEec
Q 011679 399 LAGKFRYPQPDYSAFREASYGHSTLEIKN 427 (479)
Q Consensus 399 ~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 427 (479)
. . .-+|+.+++.+
T Consensus 143 -----~----------~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 143 -----G----------D-QSGYAILDIED 155 (156)
T ss_dssp -----S----------S-SEEEEEEEETT
T ss_pred -----C----------C-CCEEEEEEEec
Confidence 0 1 35788888754
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.19 E-value=1.1e-10 Score=100.43 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=74.1
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccC
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTY 240 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~ 240 (479)
||+++||+|.... .+...++|+++++||++.... ...++.+.+.++.+. ..++++++||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~------~~~~~~~~~~l~~~~-~~~~~~v~GNHD~~~--- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGT------LEELQKFLDWLKSLP-HPHKIVIAGNHDLTL--- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCC------HHHHHHHHHHHHhCC-CCeEEEEECCCCCcC---
Confidence 5899999998754 222348999999999985422 122233444444432 123578999999631
Q ss_pred CCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEecccc
Q 011679 241 MGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPI 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~ 320 (479)
. . ..+.|+++|.|+
T Consensus 65 ------------------------~--------------------------------------~----~~~~ilv~H~~p 78 (135)
T cd07379 65 ------------------------D--------------------------------------P----EDTDILVTHGPP 78 (135)
T ss_pred ------------------------C--------------------------------------C----CCCEEEEECCCC
Confidence 0 1 124688999999
Q ss_pred ccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccce
Q 011679 321 YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
+............-.+.+.+++++++++++|+||+|...
T Consensus 79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 79 YGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred CcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 765432211011112456677788999999999999864
No 37
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.16 E-value=4.7e-10 Score=107.82 Aligned_cols=85 Identities=18% Similarity=0.082 Sum_probs=62.2
Q ss_pred EEECCCCCCCCCCeEEEEEecCCCCCCcH---HHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc
Q 011679 147 WFQTPPKIDPDASYKFGIIGDLGQTYNSL---STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY 223 (479)
Q Consensus 147 ~f~T~p~~~~~~~~~f~~~gD~~~~~~~~---~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479)
...++..+....+++++.++|.|...... +.+..+....||+|+++||++.... ...++.+.+.++.+.+.
T Consensus 32 ~i~~~~~~~~~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~------~~~~~~~~~~L~~L~~~ 105 (284)
T COG1408 32 TILTPKLPASLQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR------PPGVAALALFLAKLKAP 105 (284)
T ss_pred EeecCCCCcccCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC------CCCHHHHHHHHHhhhcc
Confidence 33344444445789999999999876552 2334444558899999999997411 23346677889999899
Q ss_pred CCeEEcCCCccccc
Q 011679 224 QPWIWSAGNHEIEY 237 (479)
Q Consensus 224 ~P~~~v~GNHD~~~ 237 (479)
.++++++||||+..
T Consensus 106 ~gv~av~GNHd~~~ 119 (284)
T COG1408 106 LGVFAVLGNHDYGV 119 (284)
T ss_pred CCEEEEeccccccc
Confidence 99999999999863
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.09 E-value=2.2e-09 Score=99.76 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=43.8
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccccc
Q 011679 160 YKFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEY 237 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~ 237 (479)
+||+++||+|..... ...+.+.+.+||+|+++||++... ....+.+..+ ..|+++++||||...
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~-----------~~~~~~l~~l--~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNES-----------VQLVRAISSL--PLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcCh-----------HHHHHHHHhC--CCCeEEEcCCCcccc
Confidence 589999999976432 223445555999999999998321 1122223322 469999999999864
No 39
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.05 E-value=7.8e-10 Score=99.48 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=67.1
Q ss_pred CCCEEEEcCcccccCcccccccchhhhHHHHHHHhh---hccCCeEEcCCCcccccccCCCccccccccccccccCcCCC
Q 011679 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS 261 (479)
Q Consensus 185 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~ 261 (479)
+||+|+++||++.+..... ..+|..+.+-+..+ ...+|++.++||||+....... ...-..+|.
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~---~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~----~~~~v~RF~------ 108 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIAN---DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDP----IESKIRRFE------ 108 (195)
T ss_pred CCCEEEEeccccCCCCCCC---HHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCc----CHHHHHHHH------
Confidence 9999999999998755322 22333322222222 2358999999999996321000 001111111
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHH
Q 011679 262 KSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESW 341 (479)
Q Consensus 262 ~~~~~~yysf~~g~~~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 341 (479)
+. | |+++|.|+..... ..+..+
T Consensus 109 -------------------------------------~~----------F-i~lsH~P~~~~~~----------~~~~~~ 130 (195)
T cd08166 109 -------------------------------------KY----------F-IMLSHVPLLAEGG----------QALKHV 130 (195)
T ss_pred -------------------------------------Hh----------h-eeeeccccccccc----------HHHHHH
Confidence 00 1 9999999976432 145677
Q ss_pred HHHcCccEEEecccccceeee
Q 011679 342 FVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 342 ~~~~~VdlvlsGH~H~y~r~~ 362 (479)
+.+++++++|+||.|.+....
T Consensus 131 ~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 131 VTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HHhcCceEEEEcCccceeeEE
Confidence 888999999999999976653
No 40
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.01 E-value=1.4e-09 Score=103.04 Aligned_cols=76 Identities=17% Similarity=0.039 Sum_probs=47.8
Q ss_pred eEEEEEecCCCCCCcHH----HHHHHH--HhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc-CCeEEcCCC
Q 011679 160 YKFGIIGDLGQTYNSLS----TLEHYM--ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGN 232 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~----~l~~i~--~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v~GN 232 (479)
|+++++||+|.+..... .++.+. +.+||+|+++||++......... ........+.++.+... +|++.++||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~-~~~~~~~~~~l~~l~~~g~~v~~v~GN 79 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDP-SPFAREIAAALKALSDSGVPCYFMHGN 79 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcC-CHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 58999999998754322 223232 23899999999999531100000 11123444556666544 899999999
Q ss_pred cccc
Q 011679 233 HEIE 236 (479)
Q Consensus 233 HD~~ 236 (479)
||..
T Consensus 80 HD~~ 83 (241)
T PRK05340 80 RDFL 83 (241)
T ss_pred Cchh
Confidence 9974
No 41
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.99 E-value=1.9e-08 Score=90.79 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=104.7
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHH--HHhhh-ccCCeEEcCCCcc
Q 011679 159 SYKFGIIGDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRF--VERSA-AYQPWIWSAGNHE 234 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~~~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~--~~~~~-~~~P~~~v~GNHD 234 (479)
.+|+++++|.|........+..+.+. ++|+++.+||++|..-.+. ..-.+. ++.+. ..+|+++++||-|
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~-------~~~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPK-------EVAEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCch-------HHHHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 68999999999987766666555554 9999999999994322111 111111 44444 4789999999977
Q ss_pred cccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCC--CC----CCChHH-HHHHHHHHhhccCC
Q 011679 235 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS--PF----VKYTPQ-WEWLREELKKVDRE 307 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~--~~----~~~~~Q-~~WL~~~L~~~~~~ 307 (479)
-..-. ......... .. + ...+.+++.|+.+--.. ++ ....++ +.-|++-+...+
T Consensus 76 ~~~v~---------~~l~~~~~~-----v~-~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~-- 136 (226)
T COG2129 76 PPEVI---------DVLKNAGVN-----VH-G--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD-- 136 (226)
T ss_pred hHHHH---------HHHHhcccc-----cc-c--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc--
Confidence 53110 000001100 01 1 46677888888744321 11 122332 233333344321
Q ss_pred CCCeEEEEeccccccCCCCccCc-CHHHHHHHHHHHHHcCccEEEecccccceee
Q 011679 308 KTPWLIVLMHVPIYNSNEAHFME-GESMRAAFESWFVRYKVDVVFAGHVHAYERS 361 (479)
Q Consensus 308 ~~~w~Iv~~H~P~~~~~~~~~~~-~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 361 (479)
..-+|+++|.|++........+ ...-...+..++++.++-+.+|||+|-+.-.
T Consensus 137 -~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~ 190 (226)
T COG2129 137 -NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGI 190 (226)
T ss_pred -CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccc
Confidence 1113999999999876542111 1223567888999999999999999984333
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.96 E-value=4.4e-09 Score=92.61 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=39.3
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
|++++||+|... ..++.+.+. ++|.|+++||++..... .. +....|++.+.||||..
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~~~d~ii~~GD~~~~~~~---------~~-------~~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFGDVDLIIHAGDVLYPGPL---------NE-------LELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhcCCCEEEECCcccccccc---------ch-------hhcCCcEEEEeCCCCCc
Confidence 589999999765 333333332 39999999999864321 01 23457899999999974
No 43
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.92 E-value=4.5e-09 Score=89.46 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=32.4
Q ss_pred EEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceee
Q 011679 312 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 361 (479)
Q Consensus 312 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 361 (479)
+|+++|+|++....... ......+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 58888888764332110 00112456778888899999999999976544
No 44
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.92 E-value=1.5e-08 Score=91.14 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=85.6
Q ss_pred CeEEEEEecCCCCCCcHHHHHH-HHHhCCCEEEEcCcccccCcccccccchhhh-----------------------HHH
Q 011679 159 SYKFGIIGDLGQTYNSLSTLEH-YMESGAQTVLFLGDLSYADRYQFIDVGVRWD-----------------------SWG 214 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~~~~~l~~-i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~-----------------------~~~ 214 (479)
.-+++.++|.+........+.. +.+.+||.|+++||+.-.... ...|. .+.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~-----~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEAR-----SDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHH-----HHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchh-----hhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 3478999999876554444433 444499999999999854221 11222 222
Q ss_pred HHHHhhh-ccCCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCC---C--C
Q 011679 215 RFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP---F--V 288 (479)
Q Consensus 215 ~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~---~--~ 288 (479)
+++..+. ..+|++++|||||-....... .+|....-.|.-. . -..-+.+.-|...++.+-.+-. . .
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~~~~lr-----~a~~~e~v~p~~~-~--vH~sf~~~~g~y~v~G~GGeI~~~~~~~~ 151 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPERFFLR-----EAYNAEIVTPHIH-N--VHESFFFWKGEYLVAGMGGEITDDQREEE 151 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SHHHHHH-----HHHHCCCC-TTEE-E---CTCEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHHHHH-----HHhccceecccee-e--eeeeecccCCcEEEEecCccccCCCcccc
Confidence 4444443 378999999999974210000 1111111111100 0 0011223334566776654211 0 0
Q ss_pred ----CChHHHHHHHHHHhhccCCCCCeEEEEecccc-ccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccce
Q 011679 289 ----KYTPQWEWLREELKKVDREKTPWLIVLMHVPI-YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 289 ----~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
......+|..+.|.+++ +. -+|+++|.|+ +..+..+. -.+.+..++++++.++|||||.|--.
T Consensus 152 ~~LrYP~weaey~lk~l~elk--~~-r~IlLfhtpPd~~kg~~h~-----GS~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 152 FKLRYPAWEAEYSLKFLRELK--DY-RKILLFHTPPDLHKGLIHV-----GSAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SS-EEEHHHHHHHHGGGGGCT--SS-EEEEEESS-BTBCTCTBTT-----SBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccchHHHHHHHHHHHHhcc--cc-cEEEEEecCCccCCCcccc-----cHHHHHHHHHhcCCcEEEecccccch
Confidence 01224556666666642 23 4788899999 44332221 13467889999999999999999743
No 45
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.90 E-value=4.4e-09 Score=94.00 Aligned_cols=50 Identities=32% Similarity=0.578 Sum_probs=32.6
Q ss_pred CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh-------ccCCeEEcCCCccccc
Q 011679 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-------AYQPWIWSAGNHEIEY 237 (479)
Q Consensus 185 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-------~~~P~~~v~GNHD~~~ 237 (479)
+||+||++||++...... . ...|....+.+..+. ..+|++.++||||+..
T Consensus 45 ~pd~vi~lGDl~d~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 45 KPDVVLFLGDLFDGGRIA--D-SEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred CCCEEEEeccccCCcEeC--C-HHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 999999999999653221 1 223443333333322 2689999999999853
No 46
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.90 E-value=1.5e-08 Score=89.19 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=32.4
Q ss_pred hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhh-h--ccCCeEEcCCCcccc
Q 011679 184 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-A--AYQPWIWSAGNHEIE 236 (479)
Q Consensus 184 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~--~~~P~~~v~GNHD~~ 236 (479)
.+||+|+++||++...... . ...|..+...+..+ . ...|++.++||||..
T Consensus 37 ~~pd~vv~~GDl~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKWS--T-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred cCCCEEEECCCCCCCCccC--C-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 3999999999999653221 1 23344433333333 2 247999999999984
No 47
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.89 E-value=4e-07 Score=81.92 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=39.3
Q ss_pred EEEEEecCCCCCCc---HHHHHHHHH-hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccc
Q 011679 161 KFGIIGDLGQTYNS---LSTLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (479)
Q Consensus 161 ~f~~~gD~~~~~~~---~~~l~~i~~-~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 235 (479)
+++++||+|..... ...+.++.+ .++|.|+|+||++.. ...+.++.+ ..|++.|.||||.
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~-------------~~~~~l~~~--~~~~~~V~GN~D~ 64 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSK-------------ETYDYLKTI--APDVHIVRGDFDE 64 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCH-------------HHHHHHHhh--CCceEEEECCCCc
Confidence 47899999954432 223444444 379999999999841 112233333 2479999999996
No 48
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.88 E-value=3.4e-08 Score=100.65 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=101.5
Q ss_pred HHHHHHHHh--CCCEEEEcCcccccCcccccccchhh---hHHHHHHHhhhccCCeEEcCCCcccccccCCC--c--cc-
Q 011679 176 STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRW---DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMG--E--VV- 245 (479)
Q Consensus 176 ~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~--~--~~- 245 (479)
.++++|.+. ++|||+++||++-.+.+.... +... ..+.+.+......+|+|++.||||........ . ..
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~-~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~ 277 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQTE-EENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRH 277 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhhH-HHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchh
Confidence 346677776 599999999999765443211 1111 12233455556689999999999985321110 0 00
Q ss_pred ----cccccccccc--cCcCC-CCCCCCcEEEE-EeCCEEEEEEcCCCCC----------CCChHHHHHHHHHHhhccCC
Q 011679 246 ----PFKSYLHRYP--TPHLA-SKSSSPLWYAI-RRASAHIIVLSSYSPF----------VKYTPQWEWLREELKKVDRE 307 (479)
Q Consensus 246 ----~~~~~~~~~~--~p~~~-~~~~~~~yysf-~~g~~~fi~Ldt~~~~----------~~~~~Q~~WL~~~L~~~~~~ 307 (479)
-|..+...|. +|... .....+.||.. -.++.++|+||+..-+ ....+|++|+..+|.++...
T Consensus 278 ~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~ 357 (577)
T KOG3770|consen 278 SQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESA 357 (577)
T ss_pred hhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhc
Confidence 0011111111 23221 11223445554 4489999999995321 23467899999999987533
Q ss_pred CCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcC--ccEEEeccccccee
Q 011679 308 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAYER 360 (479)
Q Consensus 308 ~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--VdlvlsGH~H~y~r 360 (479)
+. -+=++.|.|+-...- . +.....+..++.++. +...|.||.|.-+-
T Consensus 358 Ge-kVhil~HIPpG~~~c---~--~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 358 GE-KVHILGHIPPGDGVC---L--EGWSINFYRIVNRFRSTIAGQFYGHTHIDEF 406 (577)
T ss_pred CC-EEEEEEeeCCCCcch---h--hhhhHHHHHHHHHHHHhhhhhccccCcceeE
Confidence 33 366789999854211 1 111233445555543 45679999998653
No 49
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.86 E-value=6.6e-08 Score=91.05 Aligned_cols=73 Identities=21% Similarity=0.103 Sum_probs=46.2
Q ss_pred EEEecCCCCCCcH----HHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cCCeEEcCCCccc
Q 011679 163 GIIGDLGQTYNSL----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEI 235 (479)
Q Consensus 163 ~~~gD~~~~~~~~----~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~ 235 (479)
+++||+|.+.... ..++.+.+. +||+|+++||++..--..... ....+.+.+.++.+.. ..|+++++||||.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~-~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDP-STLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCC-CHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 6899999875432 234444443 799999999999521000000 1122344555666654 4899999999997
Q ss_pred c
Q 011679 236 E 236 (479)
Q Consensus 236 ~ 236 (479)
.
T Consensus 81 ~ 81 (231)
T TIGR01854 81 L 81 (231)
T ss_pred h
Confidence 5
No 50
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.86 E-value=4e-08 Score=86.83 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=42.1
Q ss_pred eEEEEEecCCCCCCcHHHH-HHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccc
Q 011679 160 YKFGIIGDLGQTYNSLSTL-EHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~l-~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 235 (479)
+|++++||+|......+.+ +.+... ++|.|+++||++. ....+.++.+ ..|++++.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~-------------~~~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS-------------PFVLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC-------------HHHHHHHHHh--CCceEEEccCCCc
Confidence 5899999999766544443 334444 7999999999981 1122233332 4589999999996
No 51
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.77 E-value=8.7e-08 Score=91.54 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=88.9
Q ss_pred eEEEEEecCCCCC------CcHH----HHHHHHHhCCC-EEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEE
Q 011679 160 YKFGIIGDLGQTY------NSLS----TLEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 228 (479)
Q Consensus 160 ~~f~~~gD~~~~~------~~~~----~l~~i~~~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 228 (479)
++|++++|+|... .... .++++.+.+|| +++.+||++....... +......++.+..--.-++
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~------~~~~~~~~~~l~~~g~d~~ 74 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST------ATKGEANIELMNALGYDAV 74 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh------ccCCcHHHHHHHhcCCCEE
Confidence 5899999999654 2233 34445555688 7799999996543211 1112223333333235667
Q ss_pred cCCCcccccccCCCccccccccccccccCc-------CC---CCCCCCcEEEEEeCCEE--EEEEcCCCCCC--------
Q 011679 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPH-------LA---SKSSSPLWYAIRRASAH--IIVLSSYSPFV-------- 288 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~-------~~---~~~~~~~yysf~~g~~~--fi~Ldt~~~~~-------- 288 (479)
++||||+..... .+.........|. .. .......|..++.++++ |+.+.+.....
T Consensus 75 ~~GNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~ 149 (252)
T cd00845 75 TIGNHEFDYGLD-----ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWII 149 (252)
T ss_pred eeccccccccHH-----HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCccc
Confidence 889999864221 0111111111110 00 01112346667778754 55554421100
Q ss_pred --CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEeccccccee
Q 011679 289 --KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 360 (479)
Q Consensus 289 --~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 360 (479)
......+.+++..+.. +.+...+|++.|.+... ...+.+.+ .++|++|+||.|..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 150 GLPFEDLAEAVAVAEELL-AEGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred CceecCHHHHHHHHHHHH-hCCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 0012233343322221 25677899999987642 01121111 6899999999998654
No 52
>PRK09453 phosphodiesterase; Provisional
Probab=98.76 E-value=4.4e-07 Score=82.20 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=44.5
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 236 (479)
||++++||+|.+....+. ++.+.+.++|.|+++||++........ ...++ ..+.++.+.. ..+++++.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPL--PEGYA-PKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCC--ccccC-HHHHHHHHHhcCCceEEEccCCcch
Confidence 589999999976433333 333444589999999999863221000 01111 1223333322 35899999999964
No 53
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.76 E-value=1.8e-08 Score=90.58 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=35.3
Q ss_pred HHHHHHHh-CCCEEEEcCcccccCcccccccchhhh-HHHHHHHhhh-------------------ccCCeEEcCCCccc
Q 011679 177 TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWD-SWGRFVERSA-------------------AYQPWIWSAGNHEI 235 (479)
Q Consensus 177 ~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~-~~~~~~~~~~-------------------~~~P~~~v~GNHD~ 235 (479)
.++.+... +||.|+++||++.. ++.+ +.+|. .+.++.+-+. ..+|++.++||||+
T Consensus 35 ~~~~~~~~l~Pd~V~fLGDLfd~-~w~~---D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDI 110 (193)
T cd08164 35 IVSMMQFWLKPDAVVVLGDLFSS-QWID---DEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDV 110 (193)
T ss_pred HHHHHHHhcCCCEEEEeccccCC-Cccc---HHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccC
Confidence 34444444 99999999999954 3321 23332 2223333221 13899999999999
Q ss_pred cc
Q 011679 236 EY 237 (479)
Q Consensus 236 ~~ 237 (479)
..
T Consensus 111 G~ 112 (193)
T cd08164 111 GY 112 (193)
T ss_pred CC
Confidence 64
No 54
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.74 E-value=3e-06 Score=85.56 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCCCC---------cHHHHHH----HHHhCCCEEEEcCcccccCc
Q 011679 158 ASYKFGIIGDLGQTYN---------SLSTLEH----YMESGAQTVLFLGDLSYADR 200 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~---------~~~~l~~----i~~~~pd~vl~~GD~~y~~~ 200 (479)
+.+||++++|+|.+.. ...++++ +.+.++|+||++||++....
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~ 57 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENK 57 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCC
Confidence 4699999999998642 1223333 33449999999999997544
No 55
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.68 E-value=4.3e-07 Score=78.34 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=36.7
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeee
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
+...-.||+.|.|+++..... ..+.+++++++|+.++.||.|--.|-.
T Consensus 156 k~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~ 203 (230)
T COG1768 156 KGVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPN 203 (230)
T ss_pred cCcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCC
Confidence 344458999999999765432 246678889999999999999876643
No 56
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.66 E-value=1.2e-07 Score=88.25 Aligned_cols=75 Identities=16% Similarity=0.057 Sum_probs=44.3
Q ss_pred EEEecCCCCCCcHH---HHHHHHH----hCCCEEEEcCcccccCcccccccchhhhH-HHHHHHhhhccCCeEEcCCCcc
Q 011679 163 GIIGDLGQTYNSLS---TLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSAAYQPWIWSAGNHE 234 (479)
Q Consensus 163 ~~~gD~~~~~~~~~---~l~~i~~----~~pd~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~~v~GNHD 234 (479)
+++||+|.+..... ....+.+ .++|.++++||++................ +...++......+++.+.||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 47899998764322 2233322 38999999999995321111100111111 2344455556789999999999
Q ss_pred ccc
Q 011679 235 IEY 237 (479)
Q Consensus 235 ~~~ 237 (479)
...
T Consensus 81 ~~~ 83 (217)
T cd07398 81 FLL 83 (217)
T ss_pred HHH
Confidence 853
No 57
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.64 E-value=7.5e-07 Score=85.27 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=87.6
Q ss_pred eEEEEEecCCCCC-------CcHHH----HHHHHHhCCC-EEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeE
Q 011679 160 YKFGIIGDLGQTY-------NSLST----LEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWI 227 (479)
Q Consensus 160 ~~f~~~gD~~~~~-------~~~~~----l~~i~~~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 227 (479)
++|+.+.|+|.-. ..... ++++.+.+++ ++|.+||++...... . -.+.+...+.++.+ ..-+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~--~-~~~g~~~~~~l~~l---~~d~ 74 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLS--T-ATKGKQMVPVLNAL---GVDL 74 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccch--h-hcCCccHHHHHHhc---CCcE
Confidence 4788888888311 11233 3344444677 999999998543211 1 01112233333332 2346
Q ss_pred EcCCCcccccccCCCccccccccccccccCc---------C-CCCCCCCcEEEEEeCCEE--EEEEcCCCCC------C-
Q 011679 228 WSAGNHEIEYMTYMGEVVPFKSYLHRYPTPH---------L-ASKSSSPLWYAIRRASAH--IIVLSSYSPF------V- 288 (479)
Q Consensus 228 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~---------~-~~~~~~~~yysf~~g~~~--fi~Ldt~~~~------~- 288 (479)
.++||||+..... .+.........|. . .....-+.|..++.++++ |+.+.+.... .
T Consensus 75 ~~~GNHefd~g~~-----~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~ 149 (257)
T cd07406 75 ACFGNHEFDFGED-----QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPE 149 (257)
T ss_pred EeecccccccCHH-----HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCC
Confidence 7899999964211 0111111111110 0 000112467888888854 5555543210 0
Q ss_pred --CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 289 --KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 289 --~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
...+-.+.+++.+++..+.++..+|++.|.+... .. .+.++ .+||++|+||.|..+
T Consensus 150 ~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 150 YVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred cceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceEEecccceeE
Confidence 0112233344433222225678899999987521 11 22222 579999999999865
No 58
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.59 E-value=9.4e-07 Score=85.65 Aligned_cols=185 Identities=15% Similarity=0.103 Sum_probs=90.5
Q ss_pred eEEEEEecCCCCC-------------CcHHH----HHHHHHhCCCEEEE-cCcccccCcccccc---cchhhhHHHHHHH
Q 011679 160 YKFGIIGDLGQTY-------------NSLST----LEHYMESGAQTVLF-LGDLSYADRYQFID---VGVRWDSWGRFVE 218 (479)
Q Consensus 160 ~~f~~~gD~~~~~-------------~~~~~----l~~i~~~~pd~vl~-~GD~~y~~~~~~~~---~~~~~~~~~~~~~ 218 (479)
++|++.+|+|... ..... ++++.+.+|+.+++ +||++......... .....+...+.+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 4788899988642 11222 33444447887776 99999643211000 0001122233333
Q ss_pred hhhccCCeEEcCCCcccccccCCCccccccccccccccCcC-------C-CCCCCCcEEEEEeC-CEEEEEEc--CCCC-
Q 011679 219 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL-------A-SKSSSPLWYAIRRA-SAHIIVLS--SYSP- 286 (479)
Q Consensus 219 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~-------~-~~~~~~~yysf~~g-~~~fi~Ld--t~~~- 286 (479)
.+ -+-+.++||||+..... .+.........|.- . .......|..++.+ ++++-++- +...
T Consensus 81 ~~---g~d~~~lGNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~ 152 (277)
T cd07410 81 AL---GYDAGTLGNHEFNYGLD-----YLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIP 152 (277)
T ss_pred hc---CCCEEeecccCcccCHH-----HHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccc
Confidence 33 23467789999864211 01111111111110 0 01112356677888 76554443 3210
Q ss_pred -C-----------CCChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEec
Q 011679 287 -F-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAG 353 (479)
Q Consensus 287 -~-----------~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsG 353 (479)
+ ....+..++..++|++ .++..+|+++|.+....... ....+ .....+.++ .+||++|+|
T Consensus 153 ~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~-~~~~~---~~~~~la~~~~~vD~IlgG 225 (277)
T cd07410 153 NWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEE-SLTGE---NAAYELAEEVPGIDAILTG 225 (277)
T ss_pred cccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccc-ccCCc---cHHHHHHhcCCCCcEEEeC
Confidence 0 0111234444555554 46788999999877543210 00111 112234444 589999999
Q ss_pred ccccce
Q 011679 354 HVHAYE 359 (479)
Q Consensus 354 H~H~y~ 359 (479)
|.|...
T Consensus 226 HsH~~~ 231 (277)
T cd07410 226 HQHRRF 231 (277)
T ss_pred CCcccc
Confidence 999753
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.51 E-value=2.3e-06 Score=81.56 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=96.7
Q ss_pred EEEEecCCCCCCc-HHHHHHHHHh---CCCEEEEcCcccccCccccc-c--cc---hhhhHHHHHHHhhh-ccCCeEEcC
Q 011679 162 FGIIGDLGQTYNS-LSTLEHYMES---GAQTVLFLGDLSYADRYQFI-D--VG---VRWDSWGRFVERSA-AYQPWIWSA 230 (479)
Q Consensus 162 f~~~gD~~~~~~~-~~~l~~i~~~---~pd~vl~~GD~~y~~~~~~~-~--~~---~~~~~~~~~~~~~~-~~~P~~~v~ 230 (479)
|++.||.|..... +..+..+.+. ++|++|++||+.-....... . .. ..+..|.+.++... ..+|++++.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 5889999985432 2224444332 79999999999632111100 0 00 11233334444332 357789999
Q ss_pred CCcccccccCCCccccccccccccccCcCCCCCCCCcE-----EEEEeCCEEEEEEcCCC---CCC--------CChHHH
Q 011679 231 GNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLW-----YAIRRASAHIIVLSSYS---PFV--------KYTPQW 294 (479)
Q Consensus 231 GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~y-----ysf~~g~~~fi~Ldt~~---~~~--------~~~~Q~ 294 (479)
||||-... +. .++..+ ....+.+ ..+++++++|..|.... .+. ....++
T Consensus 81 GNHE~~~~-----------l~---~l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~ 145 (262)
T cd00844 81 GNHEASNY-----------LW---ELPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTK 145 (262)
T ss_pred CCCCCHHH-----------HH---hhcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHH
Confidence 99995311 00 011000 0011222 23557889999887521 111 112233
Q ss_pred HHH-------HHHHhhccCCCCCeEEEEeccccccCCCCccCc---------------CHHHHHHHHHHHHHcCccEEEe
Q 011679 295 EWL-------REELKKVDREKTPWLIVLMHVPIYNSNEAHFME---------------GESMRAAFESWFVRYKVDVVFA 352 (479)
Q Consensus 295 ~WL-------~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~---------------~~~~~~~l~~l~~~~~Vdlvls 352 (479)
..+ ...|.... ... -|+++|.|+.......... +..-...+..++++.+....|+
T Consensus 146 rs~y~~r~~~~~kl~~~~-~~v--DIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~ 222 (262)
T cd00844 146 RSAYHVRNIEVFKLKQLK-QPI--DIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFS 222 (262)
T ss_pred HHhhhhhHHHHHHHHhcC-CCC--cEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEE
Confidence 221 11222211 123 5999999998654321100 0112346778899999999999
Q ss_pred ccccc-ceeeee
Q 011679 353 GHVHA-YERSYR 363 (479)
Q Consensus 353 GH~H~-y~r~~~ 363 (479)
||.|. |++..|
T Consensus 223 gH~H~~f~~~~~ 234 (262)
T cd00844 223 AHLHVKFAALVP 234 (262)
T ss_pred ecCCcccceecC
Confidence 99998 565654
No 60
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.49 E-value=8.9e-07 Score=90.20 Aligned_cols=73 Identities=23% Similarity=0.109 Sum_probs=50.4
Q ss_pred eEEEEEecCCCCC-C--c-------H----HHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh-ccC
Q 011679 160 YKFGIIGDLGQTY-N--S-------L----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQ 224 (479)
Q Consensus 160 ~~f~~~gD~~~~~-~--~-------~----~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 224 (479)
+||++++|+|.+. . . . ..++.+.+.++||||++||+......+. .--..+.+.++.+. .++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~----~a~~~~~~~l~~l~~~~I 76 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSP----RALKLFLEALRRLKDAGI 76 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCH----HHHHHHHHHHHHhccCCC
Confidence 6899999999982 1 1 1 2344455569999999999997643321 11133445566654 379
Q ss_pred CeEEcCCCcccc
Q 011679 225 PWIWSAGNHEIE 236 (479)
Q Consensus 225 P~~~v~GNHD~~ 236 (479)
|++++.||||..
T Consensus 77 pv~~I~GNHD~~ 88 (390)
T COG0420 77 PVVVIAGNHDSP 88 (390)
T ss_pred cEEEecCCCCch
Confidence 999999999985
No 61
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.45 E-value=2.9e-06 Score=84.51 Aligned_cols=74 Identities=19% Similarity=0.112 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCCCc---------HHHHHH----HHHhCCCEEEEcCcccccCcccccccchhhhHHHH-HHHhhh-ccC
Q 011679 160 YKFGIIGDLGQTYNS---------LSTLEH----YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGR-FVERSA-AYQ 224 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~---------~~~l~~----i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 224 (479)
|||+++||+|.+... ...+++ +.+.+||+||++||++....... ........+ +++.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~---~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAIT---QNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC---HHHHHHHHHHHHHHHHHCCC
Confidence 689999999986431 123333 33459999999999985432111 111122222 244443 368
Q ss_pred CeEEcCCCcccc
Q 011679 225 PWIWSAGNHEIE 236 (479)
Q Consensus 225 P~~~v~GNHD~~ 236 (479)
|+++++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999974
No 62
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.39 E-value=5.6e-06 Score=80.59 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=47.1
Q ss_pred cEEEEEeCCEE--EEEEcCCC-CC--------C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHH
Q 011679 267 LWYAIRRASAH--IIVLSSYS-PF--------V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESM 334 (479)
Q Consensus 267 ~yysf~~g~~~--fi~Ldt~~-~~--------~-~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~ 334 (479)
.|.-++.++++ ||.+-+.. .. + ....-.+-+++.+++.+..++..+|++.|........... ....
T Consensus 138 py~i~~~~G~kIgviGl~~~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~ 215 (288)
T cd07412 138 PYTIKDVGGVKVGFIGAVTKDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAA 215 (288)
T ss_pred CEEEEEECCEEEEEEeecCCCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--cccc
Confidence 46667788754 55553321 00 0 0122233444444433224678899999987643221110 0001
Q ss_pred HHHHHHHHHH--cCccEEEeccccccee
Q 011679 335 RAAFESWFVR--YKVDVVFAGHVHAYER 360 (479)
Q Consensus 335 ~~~l~~l~~~--~~VdlvlsGH~H~y~r 360 (479)
......++.+ .++|++|+||.|....
T Consensus 216 ~~~~~~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 216 SGPIADIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred ChhHHHHHhhcCCCCCEEEeCccCcccc
Confidence 1122334444 4799999999998643
No 63
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.38 E-value=3.1e-06 Score=81.39 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=75.9
Q ss_pred HHHHHHh-CCCEE-EEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccc
Q 011679 178 LEHYMES-GAQTV-LFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYP 255 (479)
Q Consensus 178 l~~i~~~-~pd~v-l~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~ 255 (479)
++++.+. .+|.+ +.+||++...... .+......++.+.. .++.++.||||++.... .+....+.+.
T Consensus 42 v~~~~~~~~~~~l~l~~GD~~~gs~~~------~~~~g~~~~~~l~~-~g~da~~GNHefd~g~~-----~l~~~~~~~~ 109 (264)
T cd07411 42 IKRIRAERNPNTLLLDGGDTWQGSGEA------LYTRGQAMVDALNA-LGVDAMVGHWEFTYGPE-----RVRELFGRLN 109 (264)
T ss_pred HHHHHHhcCCCeEEEeCCCccCCChHH------hhcCChhHHHHHHh-hCCeEEecccccccCHH-----HHHHHHhhCC
Confidence 3444455 78877 5799999654321 11111222333322 45555559999864211 1111111111
Q ss_pred cCcCC--------CCCCCCcEEEEEeCCE--EEEEEcCCCCCC----------CChHHHHHHHHHHhhcc-CCCCCeEEE
Q 011679 256 TPHLA--------SKSSSPLWYAIRRASA--HIIVLSSYSPFV----------KYTPQWEWLREELKKVD-REKTPWLIV 314 (479)
Q Consensus 256 ~p~~~--------~~~~~~~yysf~~g~~--~fi~Ldt~~~~~----------~~~~Q~~WL~~~L~~~~-~~~~~w~Iv 314 (479)
+|.-. .......|..++.+++ -+|.+.+..... ......+.+++.+.+.. ..++..+|+
T Consensus 110 ~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~ 189 (264)
T cd07411 110 WPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVL 189 (264)
T ss_pred CCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 11100 0011124666778874 556665431100 01233445554433321 246788999
Q ss_pred EeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccc
Q 011679 315 LMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 358 (479)
Q Consensus 315 ~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y 358 (479)
+.|.+... .. .+.++ .+||++|+||.|..
T Consensus 190 l~H~g~~~--------~~-------~la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 190 LSHNGLPV--------DV-------ELAERVPGIDVILSGHTHER 219 (264)
T ss_pred EecCCchh--------hH-------HHHhcCCCCcEEEeCccccc
Confidence 99986531 11 12222 57999999999974
No 64
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.35 E-value=4.5e-06 Score=79.92 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=87.2
Q ss_pred eEEEEEecCCCCCC-------cHHHHHH----HHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEE
Q 011679 160 YKFGIIGDLGQTYN-------SLSTLEH----YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 228 (479)
Q Consensus 160 ~~f~~~gD~~~~~~-------~~~~l~~----i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 228 (479)
++++.++|+|.... ....+.. +.+.++++++.+||++...... . +......++.+..--.-+.
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~--~----~~~g~~~~~~ln~~g~d~~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPIS--D----LDKGETIIKIMNAVGYDAV 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhh--h----hcCCcHHHHHHHhcCCcEE
Confidence 47899999997421 2333333 3222578999999998543211 1 0111122333322222345
Q ss_pred cCCCcccccccCCCccccccccccccccCcCCC--------CCCCCcEEEEEeC-C--EEEEEEcCCC-C-----CC---
Q 011679 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS--------KSSSPLWYAIRRA-S--AHIIVLSSYS-P-----FV--- 288 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~yysf~~g-~--~~fi~Ldt~~-~-----~~--- 288 (479)
++||||++.... .+..+.+.+.+|.-.+ ...-..|.-++.+ + +-|+.+-+.. . ..
T Consensus 75 ~~GNHefd~G~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~ 149 (257)
T cd07408 75 TPGNHEFDYGLD-----RLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKD 149 (257)
T ss_pred ccccccccCCHH-----HHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCC
Confidence 789999864211 1111122222221100 0011235556777 5 5566665431 0 00
Q ss_pred C-ChHHHHHHHHH-HhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEeccccccee
Q 011679 289 K-YTPQWEWLREE-LKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 360 (479)
Q Consensus 289 ~-~~~Q~~WL~~~-L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 360 (479)
. ..+-.+-+++. .....+.++.-+|++.|.+...... ... ...+.. .-.++|++|.||.|....
T Consensus 150 ~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~----~~~--~~~la~--~~~giDvIigGH~H~~~~ 215 (257)
T cd07408 150 VTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSS----PWT--STELAA--NVTGIDLIIDGHSHTTIE 215 (257)
T ss_pred cEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCC----Ccc--HHHHHH--hCCCceEEEeCCCccccc
Confidence 0 01112223332 2221125678899999988654311 100 112222 125899999999998643
No 65
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.29 E-value=4.2e-05 Score=72.55 Aligned_cols=190 Identities=17% Similarity=0.183 Sum_probs=97.5
Q ss_pred EEEEEecCCCCCCcH---HHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSL---STLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~---~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
|++++||.=...+.. ..+..+.+. ++||+|..||++-.. ... . ....+.+..+ .+- +.+.|||+++
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg-~gl---~---~~~~~~L~~~--G~D-~iTlGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGG-KGI---T---PKIAKELLSA--GVD-VITMGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCC-CCC---C---HHHHHHHHhc--CCC-EEEecccccC
Confidence 588999986654432 234445444 799999999998643 111 1 1122222222 233 4566999996
Q ss_pred cccCCCcccccccccccc---ccCcCCC-CCCCCcEEEEEeCCEEEEEEcCCCCCC--CChHHHHHHHHHHhhccCCCCC
Q 011679 237 YMTYMGEVVPFKSYLHRY---PTPHLAS-KSSSPLWYAIRRASAHIIVLSSYSPFV--KYTPQWEWLREELKKVDREKTP 310 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~---~~p~~~~-~~~~~~yysf~~g~~~fi~Ldt~~~~~--~~~~Q~~WL~~~L~~~~~~~~~ 310 (479)
.. + ...+.... -.|.+-+ ......|..++.++.++-+++-..... ....-++-+++.+++.+ .+++
T Consensus 71 ~g----e---l~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk-~~~D 142 (255)
T cd07382 71 KK----E---ILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELK-EEAD 142 (255)
T ss_pred cc----h---HHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHh-cCCC
Confidence 42 1 11111111 1111111 111235777888876655544321111 11122334555555543 2567
Q ss_pred eEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEE-
Q 011679 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT- 389 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 389 (479)
.+||.+|.-.. .....+.. .-..+||+++.||+|...--..+ -++|+.||+
T Consensus 143 ~IIV~~H~g~t-----------sEk~ala~-~ldg~VdvIvGtHTHv~t~d~~i----------------l~~gTa~itd 194 (255)
T cd07382 143 IIFVDFHAEAT-----------SEKIALGW-YLDGRVSAVVGTHTHVQTADERI----------------LPGGTAYITD 194 (255)
T ss_pred EEEEEECCCCC-----------HHHHHHHH-hCCCCceEEEeCCCCccCCccEE----------------eeCCeEEEec
Confidence 89999997321 11112221 11346999999999986332221 136777887
Q ss_pred eCCCCCC
Q 011679 390 VGDGGNQ 396 (479)
Q Consensus 390 ~G~gG~~ 396 (479)
.|.-|..
T Consensus 195 ~Gm~G~~ 201 (255)
T cd07382 195 VGMTGPY 201 (255)
T ss_pred CccccCC
Confidence 4544544
No 66
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.28 E-value=6.5e-05 Score=71.43 Aligned_cols=195 Identities=19% Similarity=0.121 Sum_probs=103.9
Q ss_pred eEEEEEecCCCCCCc---HHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh-ccCCeEEcCCCcc
Q 011679 160 YKFGIIGDLGQTYNS---LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHE 234 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~---~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD 234 (479)
+|++++||.=..... ...+..+.+. ++||+|..||++-. +... . . +..+.+. ..+-++. .|||+
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g-G~Gi---~---~---~~~~~L~~~GvDviT-~GNH~ 69 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH-GKGL---T---L---KIYEFLKQSGVNYIT-MGNHT 69 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC-CCCC---C---H---HHHHHHHhcCCCEEE-ccchh
Confidence 589999998654321 2334455544 79999999999853 2111 1 1 1222222 2445554 49999
Q ss_pred cccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCC-CCC-C--ChHHHHHHHHHHhhccCCCCC
Q 011679 235 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS-PFV-K--YTPQWEWLREELKKVDREKTP 310 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~-~~~-~--~~~Q~~WL~~~L~~~~~~~~~ 310 (479)
++..................+.|... ....|..++.++..+-+++-.. .+. . ...-++-+++.+++.+ .+++
T Consensus 70 ~Dkge~~~~i~~~~~~lrpanyp~~~---pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d 145 (266)
T TIGR00282 70 WFQKLILDVVINQKDLVRPLNFDTSF---AGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCD 145 (266)
T ss_pred ccCcHHHHHHhccccccccCCCCCCC---CCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCC
Confidence 97421000000000111111223211 1234566777876666655421 111 1 1112223444444432 2467
Q ss_pred eEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEE-
Q 011679 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT- 389 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 389 (479)
.+||.+|.-. ... +.....+-+.+|++|+.-|+|...--.++ -++|+.||+
T Consensus 146 ~IIVd~Haea-----------tsE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~i----------------l~~gtayitD 197 (266)
T TIGR00282 146 LIFVDFHAET-----------TSE-KNAFGMAFDGYVTAVVGTHTHVPTADLRI----------------LPKGTAYITD 197 (266)
T ss_pred EEEEEeCCCC-----------HHH-HHHHHHHhCCCccEEEeCCCCCCCCccee----------------CCCCCEEEec
Confidence 8999999632 122 34456677889999999999986443322 247888998
Q ss_pred eCCCCCCC
Q 011679 390 VGDGGNQE 397 (479)
Q Consensus 390 ~G~gG~~~ 397 (479)
+|.-|...
T Consensus 198 ~Gm~G~~~ 205 (266)
T TIGR00282 198 VGMTGPFG 205 (266)
T ss_pred CCcccCcc
Confidence 66666543
No 67
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.27 E-value=4.9e-05 Score=67.52 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=43.3
Q ss_pred eEEEEEecCCCCCCc-HHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNS-LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~-~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
++++++||+|..... ....+.....++|+|||+||.+..... .. ++.. -..++++|.||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~---------~~----l~~~-~~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL---------DA----LEGG-LAAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch---------HH----hhcc-cccceEEEEccCCCc
Confidence 689999999997642 333444444599999999999964321 11 1110 145899999999985
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.26 E-value=1.3e-05 Score=77.76 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=87.0
Q ss_pred eEEEEEecCCCCC------------------CcHHH----HHHHHHhCCC-EEEEcCcccccCcccccccchhhhHHHHH
Q 011679 160 YKFGIIGDLGQTY------------------NSLST----LEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRF 216 (479)
Q Consensus 160 ~~f~~~gD~~~~~------------------~~~~~----l~~i~~~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~ 216 (479)
++|+..+|+|... ..... ++++.+..++ +++.+||++....... ..+.+...+.
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~---~~~g~~~~~~ 77 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYT---LYKGNADAEF 77 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhh---hcCChHHHHH
Confidence 4788888888531 11222 3334434566 5667999986533211 0111222233
Q ss_pred HHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCCC-----------CCCCCcEEEEEeCCEE--EEEEcC
Q 011679 217 VERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS-----------KSSSPLWYAIRRASAH--IIVLSS 283 (479)
Q Consensus 217 ~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~~yysf~~g~~~--fi~Ldt 283 (479)
+..+ ... +.++||||+++... .+..+.....+|.-.+ ......|..++.++++ ||.+-+
T Consensus 78 ln~~--g~D-~~~lGNHefd~G~~-----~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~ 149 (281)
T cd07409 78 MNLL--GYD-AMTLGNHEFDDGVE-----GLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTT 149 (281)
T ss_pred HHhc--CCC-EEEeccccccCCHH-----HHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEec
Confidence 3322 233 55779999974321 0111111111111100 0112346667888754 555544
Q ss_pred CCCC-------C-CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecc
Q 011679 284 YSPF-------V-KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGH 354 (479)
Q Consensus 284 ~~~~-------~-~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH 354 (479)
.... + ...+..+.+++.+++.+..++..+|++.|...-. .. .+.++ .++|++|+||
T Consensus 150 ~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~------------d~---~la~~~~giD~IiggH 214 (281)
T cd07409 150 PDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV------------DK---EIARKVPGVDVIVGGH 214 (281)
T ss_pred CcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh------------HH---HHHHcCCCCcEEEeCC
Confidence 2110 0 0123345566655554334678899999976421 01 22222 5899999999
Q ss_pred cccce
Q 011679 355 VHAYE 359 (479)
Q Consensus 355 ~H~y~ 359 (479)
.|...
T Consensus 215 ~H~~~ 219 (281)
T cd07409 215 SHTFL 219 (281)
T ss_pred cCccc
Confidence 99864
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.19 E-value=1.8e-05 Score=82.87 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCeEEEEEecCCCCCCc--HHH----HHHHH---------HhCCCEEEEcCcccccCccccc--------ccchhhhHH
Q 011679 157 DASYKFGIIGDLGQTYNS--LST----LEHYM---------ESGAQTVLFLGDLSYADRYQFI--------DVGVRWDSW 213 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~~--~~~----l~~i~---------~~~pd~vl~~GD~~y~~~~~~~--------~~~~~~~~~ 213 (479)
...++++++||+|.+... ... ++.+. +.+++.+|++||++...+.... +...+++.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 357899999999977542 111 23333 3479999999999964221100 001122345
Q ss_pred HHHHHhhhccCCeEEcCCCcccc
Q 011679 214 GRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 214 ~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
.+.++.+...+|+++++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 56677777788999999999975
No 70
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=3.7e-06 Score=80.18 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=48.7
Q ss_pred eEEEEEecCCCCCCc---------HHHHHH----HHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-c-C
Q 011679 160 YKFGIIGDLGQTYNS---------LSTLEH----YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y-Q 224 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~---------~~~l~~----i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 224 (479)
|||+++||+|.+... ...++. +.+.++|+||++||++...... ......+.+.++.+.. . +
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~----~~~~~~~~~~l~~l~~~~~i 76 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPP----AEAQELFNAFFRNLSDANPI 76 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC----HHHHHHHHHHHHHHHhcCCc
Confidence 689999999986431 122333 3344899999999999654321 1112334556666644 3 8
Q ss_pred CeEEcCCCcccc
Q 011679 225 PWIWSAGNHEIE 236 (479)
Q Consensus 225 P~~~v~GNHD~~ 236 (479)
|+++++||||..
T Consensus 77 ~v~~i~GNHD~~ 88 (253)
T TIGR00619 77 PIVVISGNHDSA 88 (253)
T ss_pred eEEEEccCCCCh
Confidence 999999999975
No 71
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.18 E-value=8.8e-06 Score=80.63 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCCeEEEEEecCCCCCCc--------H------HHHHH---HHH--hCCCEEEEcCcccccCcccccccchhhhHHHHHH
Q 011679 157 DASYKFGIIGDLGQTYNS--------L------STLEH---YME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFV 217 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~~--------~------~~l~~---i~~--~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~ 217 (479)
+..+|++.++|.|.-.+. . .-+++ +.. .+||.++++||+..+..... +.+|....+-+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~---~eEf~~~~~Rf 122 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAG---DEEFKKRYERF 122 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCC---hHHHHHHHHHH
Confidence 468999999999875421 0 01121 111 19999999999997544322 34453322223
Q ss_pred Hhhh---ccCCeEEcCCCcccccccCCCccccccccccccccCcCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCC
Q 011679 218 ERSA---AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVK 289 (479)
Q Consensus 218 ~~~~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yysf~~g~~~fi~Ldt~~~~~~ 289 (479)
+.+. .++|++.++||||+...... ...+..||.- ..++...+|+.|+..|+++|++...+.
T Consensus 123 kkIf~~k~~~~~~~i~GNhDIGf~~~~-----~~~~i~Rfe~------~fg~~~r~f~v~~~tf~~~d~~~ls~~ 186 (410)
T KOG3662|consen 123 KKIFGRKGNIKVIYIAGNHDIGFGNEL-----IPEWIDRFES------VFGPTERRFDVGNLTFVMFDSNALSGN 186 (410)
T ss_pred HHhhCCCCCCeeEEeCCcccccccccc-----chhHHHHHHH------hhcchhhhhccCCceeEEeeehhhcCC
Confidence 3332 36899999999999753211 1122333321 012356779999999999998754433
No 72
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.15 E-value=3.1e-05 Score=89.30 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=94.1
Q ss_pred CCeEEEEEecCCCCCCcHHH----HHHHHHhCCCEEEE-cCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCC
Q 011679 158 ASYKFGIIGDLGQTYNSLST----LEHYMESGAQTVLF-LGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~~~~~----l~~i~~~~pd~vl~-~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 232 (479)
..++|++++|+|........ ++++.+.+|+.+++ +||++...... . ..+.. ..++.+..--.-++++||
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~--~-~~~g~---~~~~~ln~lg~d~~~~GN 732 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYS--N-LLKGL---PVLKMMKEMGYDASTFGN 732 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchh--h-hcCCh---HHHHHHhCcCCCEEEecc
Confidence 56999999999966433333 44455558887765 99998543211 0 01112 233333332344679999
Q ss_pred cccccccCC-----Cccc---cccccc-ccccc-------CcCC-CCCCCCcEEEEEeCCE--EEEEEcCCC-CC----C
Q 011679 233 HEIEYMTYM-----GEVV---PFKSYL-HRYPT-------PHLA-SKSSSPLWYAIRRASA--HIIVLSSYS-PF----V 288 (479)
Q Consensus 233 HD~~~~~~~-----~~~~---~~~~~~-~~~~~-------p~~~-~~~~~~~yysf~~g~~--~fi~Ldt~~-~~----~ 288 (479)
||++..... .... .-..|. ..|.+ ...+ .......|.-++.+++ -||.+-+.. .. .
T Consensus 733 HEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~ 812 (1163)
T PRK09419 733 HEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPG 812 (1163)
T ss_pred cccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCC
Confidence 998643210 0000 000000 00110 0000 0011235667788874 456665421 00 0
Q ss_pred -----CChHHHHHHHHHHhhcc-CCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 289 -----KYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 289 -----~~~~Q~~WL~~~L~~~~-~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
...+..+.+++..++.+ ..++..+|++.|......... .++ ....+.++ .+||++|.||+|..-
T Consensus 813 ~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~~-----~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 813 NVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GEI-----TGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--ccc-----HHHHHHHhCCCCCEEEeCCCCccc
Confidence 01122333444433332 146788999999986532111 011 12334443 479999999999753
No 73
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.14 E-value=0.00017 Score=69.74 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=90.1
Q ss_pred CCeEEEEEecCCCCCC----------c----HHHHHHHHH----hCCC-EEEEcCcccccCcccccccchhhhHHHHHHH
Q 011679 158 ASYKFGIIGDLGQTYN----------S----LSTLEHYME----SGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 218 (479)
Q Consensus 158 ~~~~f~~~gD~~~~~~----------~----~~~l~~i~~----~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~ 218 (479)
..++|++.+|+|.... . .+.++++.+ .+++ ++|..||++......... ...+....+.+.
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~-~~~g~~~~~~mN 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDAS-PPPGSYSNPIFR 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeee-cCCChHHHHHHH
Confidence 5799999999996421 1 112233322 2455 678899999654322110 112333333333
Q ss_pred hhhccCCeEEcCCCcccccccCCCccccccccccccccCcC--------CC---CCCCCcEEEEEeC-CE--EEEEEcCC
Q 011679 219 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL--------AS---KSSSPLWYAIRRA-SA--HIIVLSSY 284 (479)
Q Consensus 219 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~--------~~---~~~~~~yysf~~g-~~--~fi~Ldt~ 284 (479)
.+ --=.+++||||++..... ...+..+......|.- +. ......|..++.+ ++ -+|.+-+.
T Consensus 83 ~m---gyDa~tlGNHEFd~g~~~--l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~ 157 (282)
T cd07407 83 MM---PYDLLTIGNHELYNYEVA--DDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFD 157 (282)
T ss_pred hc---CCcEEeecccccCccccH--HHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecc
Confidence 32 123678999999632110 0000001111111110 00 0112346666775 64 45666442
Q ss_pred CC-CC------CC--hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHc-Ccc-EEEec
Q 011679 285 SP-FV------KY--TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVD-VVFAG 353 (479)
Q Consensus 285 ~~-~~------~~--~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~Vd-lvlsG 353 (479)
.. .. .. ..+.+|+.+.|++ .++..+|+++|....... + ..+....+.++. ++| ++|+|
T Consensus 158 ~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~~la~~~~~id~~Ii~G 226 (282)
T cd07407 158 FKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHDAIRKIFPDTPIQFLGG 226 (282)
T ss_pred cccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHHHHHHhCCCCCEEEEeC
Confidence 21 00 01 1233488877875 457889999998764321 1 111112233333 577 79999
Q ss_pred ccccc
Q 011679 354 HVHAY 358 (479)
Q Consensus 354 H~H~y 358 (479)
|+|..
T Consensus 227 HsH~~ 231 (282)
T cd07407 227 HSHVR 231 (282)
T ss_pred Ccccc
Confidence 99974
No 74
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.10 E-value=3.1e-05 Score=75.24 Aligned_cols=187 Identities=14% Similarity=0.091 Sum_probs=85.7
Q ss_pred eEEEEEecCCCCCC-------cH----HHHHHHHHh-----CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc
Q 011679 160 YKFGIIGDLGQTYN-------SL----STLEHYMES-----GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY 223 (479)
Q Consensus 160 ~~f~~~gD~~~~~~-------~~----~~l~~i~~~-----~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479)
++|+..+|+|.... .. ..++++.+. ..-+++.+||++...... . ........+.+..+ .
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~--~-~~~g~~~~~~~n~~--g 75 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPES--D-LQDAEPDFRGMNLV--G 75 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhH--H-hcCcchHHHHHHhh--C
Confidence 47899999987521 11 223334332 234889999998533211 1 01111112223322 2
Q ss_pred CCeEEcCCCcccccccCCCccccccccccccccCcCC-------CCCCCCcEEEEEeCCEE--EEEEcCCCC-C--C---
Q 011679 224 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA-------SKSSSPLWYAIRRASAH--IIVLSSYSP-F--V--- 288 (479)
Q Consensus 224 ~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~yysf~~g~~~--fi~Ldt~~~-~--~--- 288 (479)
. =..++||||+++.... +........+|.-. .......|.-++.++++ ||.+-+... . .
T Consensus 76 ~-Da~~~GNHEfD~G~~~-----L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~ 149 (285)
T cd07405 76 Y-DAMAVGNHEFDNPLEV-----LRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAY 149 (285)
T ss_pred C-cEEeecccccccCHHH-----HHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCcCC
Confidence 2 3457799999753211 11111110111100 00112346667788755 455543211 0 0
Q ss_pred -CC---hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccce
Q 011679 289 -KY---TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 289 -~~---~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
.+ .+..+=+++.+++.+..++.-+|+++|.......... ........+.+.+...++|++|.||.|...
T Consensus 150 ~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~--~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 150 FEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHG--SNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCcccc--ccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 00 1122222222222221467889999998875322110 000111123333323589999999999854
No 75
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.09 E-value=6.4e-05 Score=79.49 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=100.4
Q ss_pred CCCCCeEEEEEecCCCCCC------------cHHH----HHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHH
Q 011679 155 DPDASYKFGIIGDLGQTYN------------SLST----LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFV 217 (479)
Q Consensus 155 ~~~~~~~f~~~gD~~~~~~------------~~~~----l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~ 217 (479)
.....++|+..+|+|.... .... ++++.+. +..++|.+||++........ ....+...+.+
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~--~~~g~~~~~~m 99 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY--LTKGEPTVDLL 99 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc--ccCCChHHHHH
Confidence 3357899999999997543 2222 2333333 55689999999965332211 12222233334
Q ss_pred HhhhccCCeEEcCCCcccccccCCCccccccccccccccCc---------CCCCCCCCcEEEEEeCCE--EEEEEcCCC-
Q 011679 218 ERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPH---------LASKSSSPLWYAIRRASA--HIIVLSSYS- 285 (479)
Q Consensus 218 ~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~---------~~~~~~~~~yysf~~g~~--~fi~Ldt~~- 285 (479)
..+ -.=..+.||||+.+... .+..+......|. .......+.|.-++.+++ -+|.+.+..
T Consensus 100 N~m---~yDa~tiGNHEFd~g~~-----~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~ 171 (517)
T COG0737 100 NAL---GYDAMTLGNHEFDYGLE-----ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTI 171 (517)
T ss_pred hhc---CCcEEeecccccccCHH-----HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcc
Confidence 333 23367899999975321 0111111111121 001122346888888874 566666411
Q ss_pred -CC---C-----CChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccc
Q 011679 286 -PF---V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVH 356 (479)
Q Consensus 286 -~~---~-----~~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H 356 (479)
.+ . ...+..+++++.+.+.+.....-+|++.|.+........... ..... +.. .++|+++.||.|
T Consensus 172 ~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~-~~~~~----~~~-~~iD~i~~GH~H 245 (517)
T COG0737 172 PTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEV-PGDVD----VAV-PGIDLIIGGHSH 245 (517)
T ss_pred cccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccc-ccccc----ccc-cCcceEeccCCc
Confidence 11 1 123456677777666543447889999999886543321110 00000 000 449999999999
Q ss_pred cc
Q 011679 357 AY 358 (479)
Q Consensus 357 ~y 358 (479)
.+
T Consensus 246 ~~ 247 (517)
T COG0737 246 TV 247 (517)
T ss_pred cc
Confidence 64
No 76
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.05 E-value=5.3e-06 Score=76.64 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=40.2
Q ss_pred EEEecCCCCCCcHHHHHHHH---------HhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhh-----hccCCeEE
Q 011679 163 GIIGDLGQTYNSLSTLEHYM---------ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-----AAYQPWIW 228 (479)
Q Consensus 163 ~~~gD~~~~~~~~~~l~~i~---------~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~~~ 228 (479)
+++||+|........+-... ..+.|.++++||++...... ....+.+..+ ....++++
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~--------~~vl~~l~~l~~~~~~~~~~v~~ 72 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDV--------IEILWLLYKLEQEAAKAGGKVHF 72 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCH--------HHHHHHHHHHHHHHHhcCCeEEE
Confidence 37999998754433322221 12579999999999643221 1222233222 23468999
Q ss_pred cCCCcccc
Q 011679 229 SAGNHEIE 236 (479)
Q Consensus 229 v~GNHD~~ 236 (479)
+.||||..
T Consensus 73 l~GNHE~~ 80 (208)
T cd07425 73 LLGNHELM 80 (208)
T ss_pred eeCCCcHH
Confidence 99999985
No 77
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.03 E-value=1.3e-05 Score=81.66 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=46.9
Q ss_pred eEEEEEecCCCCCCc---------HHHHH----HHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cCC
Q 011679 160 YKFGIIGDLGQTYNS---------LSTLE----HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQP 225 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~---------~~~l~----~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P 225 (479)
|||+++||+|.+... ...++ .+.+.+||+||++||++...... ......+.+++..+.. .+|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~----~~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPP----SYARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCc----HHHHHHHHHHHHHHHhcCCc
Confidence 689999999986421 11122 33345999999999998543211 1111233445555543 589
Q ss_pred eEEcCCCcccc
Q 011679 226 WIWSAGNHEIE 236 (479)
Q Consensus 226 ~~~v~GNHD~~ 236 (479)
+++++||||..
T Consensus 77 v~~I~GNHD~~ 87 (407)
T PRK10966 77 LVVLAGNHDSV 87 (407)
T ss_pred EEEEcCCCCCh
Confidence 99999999975
No 78
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=1.7e-05 Score=72.79 Aligned_cols=68 Identities=19% Similarity=0.119 Sum_probs=40.9
Q ss_pred EEecCCCCCCcH---HHHHH-HHHh--CCCEEEEcCcccccCcccccccchhhhHHH----HHHHhhh-ccCCeEEcCCC
Q 011679 164 IIGDLGQTYNSL---STLEH-YMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWG----RFVERSA-AYQPWIWSAGN 232 (479)
Q Consensus 164 ~~gD~~~~~~~~---~~l~~-i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~----~~~~~~~-~~~P~~~v~GN 232 (479)
++||.|.+.... ..+.. +... +.|.+.++||++.. +.. +..|.+.. ..+..+. ...|+|.+.||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~--w~g---~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN 76 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDG--WIG---DDEPPQLHRQVAQKLLRLARKGTRVYYIHGN 76 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhh--hhc---CCcccHHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 689999984332 22223 3333 55999999999953 221 12233322 2233333 35899999999
Q ss_pred cccc
Q 011679 233 HEIE 236 (479)
Q Consensus 233 HD~~ 236 (479)
||+.
T Consensus 77 ~Dfl 80 (237)
T COG2908 77 HDFL 80 (237)
T ss_pred hHHH
Confidence 9974
No 79
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.87 E-value=3.5e-05 Score=66.90 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=40.1
Q ss_pred EEEecCCCCCC-cHHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhh-hccCCeEEcCCCcc
Q 011679 163 GIIGDLGQTYN-SLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-AAYQPWIWSAGNHE 234 (479)
Q Consensus 163 ~~~gD~~~~~~-~~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~~v~GNHD 234 (479)
+++||.+.... ....++.+.+. ..|++|++||+.-.... . +.|.+++..- ...+|.|++-|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-----~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-----D---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-----h---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 36889877543 23344444333 78999999999954321 1 2344444332 34689999999997
No 80
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.85 E-value=0.00015 Score=77.21 Aligned_cols=187 Identities=15% Similarity=0.113 Sum_probs=88.5
Q ss_pred CCCeEEEEEecCCCCCC-------cHHH----HHHHHHh-----CCCEEEEcCcccccCcccccccchhhhHHHHHHHhh
Q 011679 157 DASYKFGIIGDLGQTYN-------SLST----LEHYMES-----GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS 220 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~-------~~~~----l~~i~~~-----~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~ 220 (479)
...++|++.+|+|.... .... ++++.+. ..-++|..||++...... . -.......+.+..+
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s--~-~~~g~~~i~~mN~~ 108 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPES--D-LQDAEPDFRGMNLI 108 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhh--h-hcCCchhHHHHhcC
Confidence 35899999999998632 1222 2333321 235789999998542211 1 00111122223222
Q ss_pred hccCCeEEcCCCcccccccCCCccccccccccccccCcC-------C-CCCCCCcEEEEEeCCEE--EEEEcCCCC--C-
Q 011679 221 AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL-------A-SKSSSPLWYAIRRASAH--IIVLSSYSP--F- 287 (479)
Q Consensus 221 ~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~-------~-~~~~~~~yysf~~g~~~--fi~Ldt~~~--~- 287 (479)
. .=+.++||||+++.... +........+|.- . ....-..|.-++.++++ ||.+-+... +
T Consensus 109 --g-~Da~tlGNHEFD~G~~~-----L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~ 180 (551)
T PRK09558 109 --G-YDAMAVGNHEFDNPLSV-----LRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIG 180 (551)
T ss_pred --C-CCEEcccccccCcCHHH-----HHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEecccccccc
Confidence 2 23567899999753210 0111111111110 0 00112346667888754 555543211 0
Q ss_pred ------C-CChHHHHHHHHHHhhccC-CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH---cCccEEEecccc
Q 011679 288 ------V-KYTPQWEWLREELKKVDR-EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR---YKVDVVFAGHVH 356 (479)
Q Consensus 288 ------~-~~~~Q~~WL~~~L~~~~~-~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~---~~VdlvlsGH~H 356 (479)
+ ...+..+-+++..++.+. .+..-+|+++|.......... ...... ..+.++ .+||++|.||.|
T Consensus 181 ~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~--~~~~~d---~~la~~~~~~~IDvIlgGHsH 255 (551)
T PRK09558 181 NPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG--SNAPGD---VEMARSLPAGGLDMIVGGHSQ 255 (551)
T ss_pred CCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC--CCCccH---HHHHHhCCccCceEEEeCCCC
Confidence 0 011122223333333221 467889999998875322110 000000 233333 379999999999
Q ss_pred cce
Q 011679 357 AYE 359 (479)
Q Consensus 357 ~y~ 359 (479)
..-
T Consensus 256 ~~~ 258 (551)
T PRK09558 256 DPV 258 (551)
T ss_pred ccc
Confidence 753
No 81
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.78 E-value=0.00025 Score=69.66 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
.+..-+|+++|..-+. .. ..+.++ .+||++|.||+|.+-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4577899999973111 11 123444 379999999999863
No 82
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.73 E-value=0.00036 Score=74.17 Aligned_cols=145 Identities=20% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCC-----
Q 011679 186 AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA----- 260 (479)
Q Consensus 186 pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~----- 260 (479)
.-++|.+||++....... -...+. .++.+..---=+.++||||+++... .+..+.....+|.-.
T Consensus 50 n~l~ldaGD~~~gs~~~~---~~~g~~---~i~~~N~~g~Da~~lGNHEFd~G~~-----~l~~~~~~~~fp~l~aNv~~ 118 (550)
T TIGR01530 50 NALVLHAGDAIIGTLYFT---LFGGRA---DAALMNAAGFDFFTLGNHEFDAGNE-----GLKEFLEPLEIPVLSANVIP 118 (550)
T ss_pred CeEEEECCCCCCCccchh---hcCCHH---HHHHHhccCCCEEEeccccccCCHH-----HHHHHHHhCCCCEEEEeeec
Confidence 358889999996432210 011111 2222222223467899999975321 011111111111100
Q ss_pred ---C--CCCCCcEEEEEeCC--EEEEEEcCCCC-C---CCC-----hHHHHHHH---HHHhhccCCCCCeEEEEeccccc
Q 011679 261 ---S--KSSSPLWYAIRRAS--AHIIVLSSYSP-F---VKY-----TPQWEWLR---EELKKVDREKTPWLIVLMHVPIY 321 (479)
Q Consensus 261 ---~--~~~~~~yysf~~g~--~~fi~Ldt~~~-~---~~~-----~~Q~~WL~---~~L~~~~~~~~~w~Iv~~H~P~~ 321 (479)
. ...-..|.-++.++ +-||.|.+... . ..+ ....+=++ +.|++ ....-+|+++|....
T Consensus 119 ~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~---~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 119 DAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQ---QGINKIILLSHAGFE 195 (550)
T ss_pred CCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHh---CCCCEEEEEecCCcH
Confidence 0 01123566777877 56777754211 0 010 11112122 34443 457889999997532
Q ss_pred cCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 322 NSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
. . ..+.++ .+||++|+||+|.+-
T Consensus 196 ~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 196 K--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred H--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 1 0 123333 479999999999964
No 83
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.72 E-value=0.00026 Score=67.96 Aligned_cols=176 Identities=21% Similarity=0.233 Sum_probs=99.3
Q ss_pred eEEEEEecCCCCCC-cHHHHHHHHHh---CCCEEEEcCcccccCccc---ccccchhhhHHHHHHH----hhhccCCeEE
Q 011679 160 YKFGIIGDLGQTYN-SLSTLEHYMES---GAQTVLFLGDLSYADRYQ---FIDVGVRWDSWGRFVE----RSAAYQPWIW 228 (479)
Q Consensus 160 ~~f~~~gD~~~~~~-~~~~l~~i~~~---~pd~vl~~GD~~y~~~~~---~~~~~~~~~~~~~~~~----~~~~~~P~~~ 228 (479)
+|+++-||+|..-+ -++++..+.+. +.|++|++||+---.... .-.+...+.....++. +..+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 68999999998754 35667777766 899999999996422211 0012233333333332 3345688999
Q ss_pred cCCCcccccccCCCccccccccccccccCcCCCCCCCCcEE-----EEEeCCEEEEEEcCC---CCCCC-------C---
Q 011679 229 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWY-----AIRRASAHIIVLSSY---SPFVK-------Y--- 290 (479)
Q Consensus 229 v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~yy-----sf~~g~~~fi~Ldt~---~~~~~-------~--- 290 (479)
+=||||..+ |+. .+|..+ -...+.|| ..++|++++-+|..- .+|.. .
T Consensus 81 IGGNHEAsn------------yL~--eLpyGG-wVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~s 145 (456)
T KOG2863|consen 81 IGGNHEASN------------YLQ--ELPYGG-WVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNS 145 (456)
T ss_pred ecCchHHHH------------HHH--hcccCc-eeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccch
Confidence 999999742 111 122211 11124444 257789999888751 11110 0
Q ss_pred -------hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHH-----------------HHHHHHHHHHHcC
Q 011679 291 -------TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGES-----------------MRAAFESWFVRYK 346 (479)
Q Consensus 291 -------~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~-----------------~~~~l~~l~~~~~ 346 (479)
-.+.+ ...|.+. +.+--|.++|.=+-+...+ ++... -...+++||++.+
T Consensus 146 tiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~~y--Gd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~Lk 218 (456)
T KOG2863|consen 146 TIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIYYY--GDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLK 218 (456)
T ss_pred hhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchhhc--CCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhC
Confidence 11111 1223332 2334588888644332221 11111 1236778999999
Q ss_pred ccEEEeccccc
Q 011679 347 VDVVFAGHVHA 357 (479)
Q Consensus 347 VdlvlsGH~H~ 357 (479)
...+|+.|.|+
T Consensus 219 P~yWfsAHLH~ 229 (456)
T KOG2863|consen 219 PQYWFSAHLHV 229 (456)
T ss_pred cchhhhhhHhh
Confidence 99999999997
No 84
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.62 E-value=8.6e-05 Score=66.49 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=31.5
Q ss_pred hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 184 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 184 ~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
.+||.++++||++....... ...+.... ........+|++.++||||..
T Consensus 40 ~~~d~lii~GDl~~~~~~~~---~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 40 YGPERLIILGDLKHSFGGLS---RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred cCCCEEEEeCcccccccccC---HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 49999999999996533211 11111111 233334578999999999975
No 85
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.56 E-value=0.0011 Score=72.56 Aligned_cols=197 Identities=15% Similarity=0.070 Sum_probs=91.7
Q ss_pred CCCCCCCCCCeEEEEEecCCCCCC-------------cHHH----HHHHHHhCC-CEEEEcCcccccCcccccccchhh-
Q 011679 150 TPPKIDPDASYKFGIIGDLGQTYN-------------SLST----LEHYMESGA-QTVLFLGDLSYADRYQFIDVGVRW- 210 (479)
Q Consensus 150 T~p~~~~~~~~~f~~~gD~~~~~~-------------~~~~----l~~i~~~~p-d~vl~~GD~~y~~~~~~~~~~~~~- 210 (479)
+.|..+....++|+..+|+|.... .... ++++.+..+ -++|..||++..... .++....
T Consensus 106 ~~~~~~~~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl--~~~~a~~~ 183 (814)
T PRK11907 106 SKPVEGQTVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPL--GTYKAIVD 183 (814)
T ss_pred CCCccCCceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcc--cchhhhcc
Confidence 344444456899999999997521 1112 333333333 478999999965332 1110000
Q ss_pred ----hHHHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCCC--------CCCCCcEEEEEe-----
Q 011679 211 ----DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS--------KSSSPLWYAIRR----- 273 (479)
Q Consensus 211 ----~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~yysf~~----- 273 (479)
......++.+..---=..++||||+++.... +..+.....+|.-.+ ...-..|--++.
T Consensus 184 ~~~~g~~~P~i~amN~LGyDA~tLGNHEFDyG~d~-----L~~~l~~a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~ 258 (814)
T PRK11907 184 PVEEGEQHPMYAALEALGFDAGTLGNHEFNYGLDY-----LEKVIATANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDT 258 (814)
T ss_pred ccccCcchHHHHHHhccCCCEEEechhhcccCHHH-----HHHHHHhCCCCEEEeeeeecCCCCccCCCeEEEEEEEecC
Confidence 0001122222221223578999999753210 111111111121100 001123444443
Q ss_pred CC------EEEEEEcCCCC--CC----C----ChHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHH
Q 011679 274 AS------AHIIVLSSYSP--FV----K----YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAA 337 (479)
Q Consensus 274 g~------~~fi~Ldt~~~--~~----~----~~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~ 337 (479)
++ +-||++-+..- |. . ..+-.+.+++...+.+...++-+|++.|..+.........++ ..
T Consensus 259 ~G~~~~vKIGiIGlvtp~~~~w~~~~l~g~v~f~D~veaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En--~~-- 334 (814)
T PRK11907 259 EGKKVTLNIGITGIVPPQILNWDKANLEGKVIVRDAVEAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEEN--VG-- 334 (814)
T ss_pred CCcccceEEEEEEeCchhhhhcccccccCCeEECCHHHHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccc--hh--
Confidence 32 55676644211 10 0 112233333333333225688899999987643211111111 11
Q ss_pred HHHHHHHcCccEEEecccccc
Q 011679 338 FESWFVRYKVDVVFAGHVHAY 358 (479)
Q Consensus 338 l~~l~~~~~VdlvlsGH~H~y 358 (479)
..+.+--+||++|.||.|..
T Consensus 335 -~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 335 -YQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred -hHHhcCCCCCEEEECCCCCc
Confidence 12223358999999999984
No 86
>PHA02239 putative protein phosphatase
Probab=97.55 E-value=0.00016 Score=67.93 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=43.1
Q ss_pred eEEEEEecCCCCCCcH-HHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSL-STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~-~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
++++++||+|...... +.++.+... ..|.++++||++...... -+.+...++.+....++++++||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s-------~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRS-------KDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCCh-------HHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 4789999999754332 223334332 259999999999753211 122223333223345899999999974
No 87
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.29 E-value=0.00034 Score=67.27 Aligned_cols=67 Identities=25% Similarity=0.318 Sum_probs=42.9
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHH-HhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~-~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
|+++++||+|........ ++.+. +.+.|.++++||++.....+ ....+.+..+ ..+++++.||||..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s--------~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS--------LEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCH--------HHHHHHHHhc--CCCeEEEecChhHH
Confidence 478999999987554332 33332 12679999999999753211 2222333332 34688999999985
No 88
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.23 E-value=0.046 Score=50.39 Aligned_cols=193 Identities=18% Similarity=0.254 Sum_probs=104.8
Q ss_pred eEEEEEecCCCCCCcHH---HHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccc
Q 011679 160 YKFGIIGDLGQTYNSLS---TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 235 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~---~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 235 (479)
+|++++||+=...+... -+..+.+. ++||||..|-++-.. . .--|+.|.++++. .+- +.+.|||=+
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G-~-----Git~k~y~~l~~~---G~d-viT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGG-F-----GITEKIYKELLEA---GAD-VITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCC-c-----CCCHHHHHHHHHh---CCC-EEecccccc
Confidence 58999999866654332 23444444 899999999998542 2 2233555554443 232 468999998
Q ss_pred ccccCCCccccccccccccccCcCCCC-CCCCcEEEEEeCCEEEEEEcCCCCC-C--CChHHHHHHHHHHhhccCCCCCe
Q 011679 236 EYMTYMGEVVPFKSYLHRYPTPHLASK-SSSPLWYAIRRASAHIIVLSSYSPF-V--KYTPQWEWLREELKKVDREKTPW 311 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~yysf~~g~~~fi~Ldt~~~~-~--~~~~Q~~WL~~~L~~~~~~~~~w 311 (479)
... .. ..|-.-..++--|.+-+. ..+..|+-|+..+..+.+++-.... . ....-+.-+++.|.+.+ .+++.
T Consensus 71 d~~-ei---~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~ 145 (266)
T COG1692 71 DQK-EI---LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDL 145 (266)
T ss_pred cch-HH---HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCce
Confidence 521 10 011111112222333221 2234577777777666665542211 0 11223444556565543 44578
Q ss_pred EEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEE-e
Q 011679 312 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT-V 390 (479)
Q Consensus 312 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~ 390 (479)
+||-+|.---+.. ..| -++-+.+|.+|+-=|+|....-.++ -++|+.||+ .
T Consensus 146 iiVDFHAEtTSEK-----------~a~-g~yldGrvsavvGTHTHV~TaD~rI----------------L~~GTayiTDv 197 (266)
T COG1692 146 IIVDFHAETTSEK-----------NAF-GWYLDGRVSAVVGTHTHVPTADERI----------------LPKGTAYITDV 197 (266)
T ss_pred EEEEccccchhhh-----------hhh-heEEcCeEEEEEeccCcccccccee----------------cCCCcEEEecC
Confidence 8999996332211 111 2233457889999999986544432 247788887 5
Q ss_pred CCCCC
Q 011679 391 GDGGN 395 (479)
Q Consensus 391 G~gG~ 395 (479)
|.-|.
T Consensus 198 GMtG~ 202 (266)
T COG1692 198 GMTGP 202 (266)
T ss_pred ccccc
Confidence 54443
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.23 E-value=0.0004 Score=65.48 Aligned_cols=69 Identities=28% Similarity=0.340 Sum_probs=43.4
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHH---Hh-------CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEE
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYM---ES-------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 228 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~---~~-------~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 228 (479)
+|++++||+|........ ++.+. +. +.|.++++||++..... .....+.+..+.....+++
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~--------s~evl~~l~~l~~~~~~~~ 72 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD--------SPEVLRLVMSMVAAGAALC 72 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC--------HHHHHHHHHHHhhCCcEEE
Confidence 379999999987654332 33331 10 25899999999975321 1223344444433346889
Q ss_pred cCCCcccc
Q 011679 229 SAGNHEIE 236 (479)
Q Consensus 229 v~GNHD~~ 236 (479)
+.||||..
T Consensus 73 v~GNHE~~ 80 (234)
T cd07423 73 VPGNHDNK 80 (234)
T ss_pred EECCcHHH
Confidence 99999974
No 90
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.21 E-value=0.01 Score=65.05 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
..+.-+|+++|..+-..... ...+. .... +++ -+||++|+||+|..-
T Consensus 243 ~GaDvIIaLsH~G~~~d~~~---~~~en--a~~~-l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGYN---VGMEN--ASYY-LTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCccccccc---ccchh--hhHH-HhcCCCCCEEEECCCCCcc
Confidence 56788999999876432111 11111 1111 234 489999999999864
No 91
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.15 E-value=0.00095 Score=62.31 Aligned_cols=70 Identities=23% Similarity=0.417 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCCc--------------HHHHHHHHH----hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhh
Q 011679 160 YKFGIIGDLGQTYNS--------------LSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 221 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~--------------~~~l~~i~~----~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~ 221 (479)
-+.++++|+|.+... .+.++.+.+ .+||.+|++||+...... ...|+.+.+.++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~-----~~~~~~~~~~l~~~- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKK-----GLEWRFIREFIEVT- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCC-----hHHHHHHHHHHHhc-
Confidence 457899999987421 123444433 389999999999964332 12234444455543
Q ss_pred ccCCeEEcCCCcccc
Q 011679 222 AYQPWIWSAGNHEIE 236 (479)
Q Consensus 222 ~~~P~~~v~GNHD~~ 236 (479)
..+++.+.||||..
T Consensus 89 -~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 -FRDLILIRGNHDAL 102 (225)
T ss_pred -CCcEEEECCCCCCc
Confidence 35899999999963
No 92
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.15 E-value=0.0029 Score=73.26 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccce
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 359 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y~ 359 (479)
..+.-+|++.|...-...... ..+ ....++.++ .+||++|.||.|..-
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~--~~e---n~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSS--GAE---DSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCC--Ccc---hHHHHHHHhCCCCcEEEeCCCcccc
Confidence 568889999998875432111 111 122334434 589999999999864
No 93
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.12 E-value=0.00061 Score=62.96 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCCcHHH-HHHHHH-hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLST-LEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~-l~~i~~-~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
|++++||+|........ ++.+.. .++|.++++||+++..... .+.++.+.. .+++++.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~-----------~~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPES-----------LACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH-----------HHHHHHHhc-CCEEEeECCChHH
Confidence 68999999976432222 222211 2589999999999643211 123333322 4689999999974
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.08 E-value=0.00072 Score=64.17 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHHH---------hCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEc
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYME---------SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWS 229 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~~---------~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v 229 (479)
+|+.++||+|........ ++.+.- .+-|.++++||++...... ....+.+..+.....++++
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S--------~~vl~~~~~~~~~~~~~~l 72 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHS--------LRMIEIVWELVEKKAAYYV 72 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcCh--------HHHHHHHHHHhhCCCEEEE
Confidence 478999999986543322 222210 0236899999999753221 1222333333344579999
Q ss_pred CCCcccc
Q 011679 230 AGNHEIE 236 (479)
Q Consensus 230 ~GNHD~~ 236 (479)
.||||..
T Consensus 73 ~GNHE~~ 79 (245)
T PRK13625 73 PGNHCNK 79 (245)
T ss_pred eCccHHH
Confidence 9999964
No 95
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.02 E-value=0.0011 Score=62.89 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=45.6
Q ss_pred EEEecCCCCCCc--HHHHHHHH----Hh-----CCCEEEEcCcccccCccccc--------ccchhhhHHHHHHHhhhcc
Q 011679 163 GIIGDLGQTYNS--LSTLEHYM----ES-----GAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFVERSAAY 223 (479)
Q Consensus 163 ~~~gD~~~~~~~--~~~l~~i~----~~-----~pd~vl~~GD~~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 223 (479)
+++||+|.+... ...++.+. .. ++|.||++||++........ .....+..+.+.++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 689999976532 12222222 22 46999999999964211000 0011234455667777777
Q ss_pred CCeEEcCCCcccc
Q 011679 224 QPWIWSAGNHEIE 236 (479)
Q Consensus 224 ~P~~~v~GNHD~~ 236 (479)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999985
No 96
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.00 E-value=0.0075 Score=65.03 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccc
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 358 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y 358 (479)
..+.-+|++.|.......... ..+... ..+++ -+||++|+||+|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en~~----~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAENSA----YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccchHH----HHHhcCCCCCEEEcCCCCcc
Confidence 467889999998764321111 111111 11333 58999999999985
No 97
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.94 E-value=0.014 Score=49.73 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=41.2
Q ss_pred EEEEEecCCCCCCc---------H-----HHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccC
Q 011679 161 KFGIIGDLGQTYNS---------L-----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ 224 (479)
Q Consensus 161 ~f~~~gD~~~~~~~---------~-----~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (479)
.+.++||+|.+... . ..+....+. .-|.+.|+||++.... +-..+...++.+...
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n--------~~~~a~~IlerLnGr- 75 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGAN--------RERAAGLILERLNGR- 75 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccc--------hhhHHHHHHHHcCCc-
Confidence 46788999986421 1 123333343 4478999999996432 114456667766443
Q ss_pred CeEEcCCCccc
Q 011679 225 PWIWSAGNHEI 235 (479)
Q Consensus 225 P~~~v~GNHD~ 235 (479)
...++||||-
T Consensus 76 -khlv~GNhDk 85 (186)
T COG4186 76 -KHLVPGNHDK 85 (186)
T ss_pred -EEEeeCCCCC
Confidence 4889999996
No 98
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.91 E-value=0.019 Score=54.27 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=38.0
Q ss_pred HHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeee
Q 011679 295 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 295 ~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
+-+++.+++.+ .+++.+|+..|-..-... ........+...+...++|+|+.||.|..+-..
T Consensus 162 ~~~~~~i~~lr-~~~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 162 ERIAADIAEAK-KKADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 34555555543 237899999996442111 111223344455556799999999999986554
No 99
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.86 E-value=0.0014 Score=61.28 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=41.3
Q ss_pred EEEEecCCCCCCcHHH-HHHHHHh--------CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCC
Q 011679 162 FGIIGDLGQTYNSLST-LEHYMES--------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 232 (479)
Q Consensus 162 f~~~gD~~~~~~~~~~-l~~i~~~--------~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 232 (479)
+.++||+|........ ++.+... ..|.+|++||++.....+ ....+.+..+.....++++.||
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S--------~~vl~~l~~l~~~~~~~~l~GN 72 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEI--------RELLEIVKSMVDAGHALAVMGN 72 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCH--------HHHHHHHHHhhcCCCEEEEEcc
Confidence 3689999987654332 3333211 357999999999653321 2233344444333468999999
Q ss_pred cccc
Q 011679 233 HEIE 236 (479)
Q Consensus 233 HD~~ 236 (479)
||..
T Consensus 73 HE~~ 76 (222)
T cd07413 73 HEFN 76 (222)
T ss_pred CcHH
Confidence 9974
No 100
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.81 E-value=0.0015 Score=60.83 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=41.1
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHH-HhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~-~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
-|++++||+|........ ++.+. ..+.|.++++||++.....+ . +.++.+.. ..++++.||||..
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~--------~---~~l~~l~~-~~~~~v~GNHE~~ 81 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPES--------L---NVLRLLNQ-PWFISVKGNHEAM 81 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH--------H---HHHHHHhh-CCcEEEECchHHH
Confidence 389999999987544333 23332 12689999999999753321 1 12222222 2578999999974
No 101
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.80 E-value=0.019 Score=62.17 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHH-cCccEEEecccccc
Q 011679 307 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 358 (479)
Q Consensus 307 ~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~VdlvlsGH~H~y 358 (479)
..+.-+|++.|..+-........ +. .... +.+ -+||++|.||.|..
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~~a--en---~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKAMA--EN---SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCcCCCCccccc--cc---hhHH-HhcCCCCCEEEeCCCCcc
Confidence 56888999999876432111101 11 1111 233 57999999999985
No 102
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.79 E-value=0.021 Score=54.13 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=92.5
Q ss_pred EEEEecCCCCCCcH--HHHHHHHH---------------hCCCEEEEcCcccccCccccc--------------ccchhh
Q 011679 162 FGIIGDLGQTYNSL--STLEHYME---------------SGAQTVLFLGDLSYADRYQFI--------------DVGVRW 210 (479)
Q Consensus 162 f~~~gD~~~~~~~~--~~l~~i~~---------------~~pd~vl~~GD~~y~~~~~~~--------------~~~~~~ 210 (479)
++++||+|.+.... ..++.+.+ .+..-+|++||.+...+.... +.....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 68899998876532 12222211 134579999999975432110 112334
Q ss_pred hHHHHHHHhhhccCCeEEcCCCcccccccCCCccccccccccccccCcCC----CCCCCCcEEEEEeCCEEEEEEcCCC-
Q 011679 211 DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA----SKSSSPLWYAIRRASAHIIVLSSYS- 285 (479)
Q Consensus 211 ~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~yysf~~g~~~fi~Ldt~~- 285 (479)
+.+..++..+...+|+...|||||-......+ .++. ...| |... -....|. |.|++++++|++.....
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQ--qplh--~~lf--p~s~~~~~~~~vtNP-~~~~i~g~~vLgtsGqni 154 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSLPQ--QPLH--RCLF--PKSSNYSTLNLVTNP-YEFSIDGVRVLGTSGQNV 154 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccCCC--CCCC--HHHh--hcccccCCcEEeCCC-eEEEECCEEEEEECCCCH
Confidence 55667788888899999999999985321111 1110 0011 1100 0111222 46889999999876532
Q ss_pred ----CCCCChHHHHHHHHHHhhcc-CCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEeccccccee
Q 011679 286 ----PFVKYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 360 (479)
Q Consensus 286 ----~~~~~~~Q~~WL~~~L~~~~-~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r 360 (479)
.+.....-++.|+..|+--. ...++=.+ |.|... +. .+++-+.-.+++++||.|.|+-
T Consensus 155 ~Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL-----~~yP~~-----~~-------Dpfvi~~~PhVyf~Gnq~~f~t 217 (257)
T cd07387 155 DDILKYSSLESRLDILERTLKWRHIAPTAPDTL-----WCYPFT-----DR-------DPFILEECPHVYFAGNQPKFGT 217 (257)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcccCCCCCCcc-----ccccCC-----CC-------CceeecCCCCEEEeCCCcceee
Confidence 12233444667777776410 01111000 111100 00 1222234589999999999876
Q ss_pred e
Q 011679 361 S 361 (479)
Q Consensus 361 ~ 361 (479)
.
T Consensus 218 ~ 218 (257)
T cd07387 218 K 218 (257)
T ss_pred e
Confidence 4
No 103
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.79 E-value=0.003 Score=56.20 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 185 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
++|.|+++||++..... ..+.+.++.+ ..|++.++||||..
T Consensus 42 ~~d~vi~~GDl~~~~~~---------~~~~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 42 PDDTVYHLGDFSFGGKA---------GTELELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCEEEEeCCCCCCCCh---------HHHHHHHHhC--CCCeEEEeCCCCch
Confidence 78999999999964321 1112333332 35899999999974
No 104
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.69 E-value=0.0032 Score=60.38 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCCcHHH-HHHHHHh------CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccC---CeEEcC
Q 011679 161 KFGIIGDLGQTYNSLST-LEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ---PWIWSA 230 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~-l~~i~~~------~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~~~v~ 230 (479)
++.++||+|........ ++.+.+. ..+.+|++||++...... ....+++..+.... .++++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS--------~eVld~L~~l~~~~~~~~vv~Lr 74 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET--------RKVIDFLISLPEKHPKQRHVFLC 74 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH--------HHHHHHHHHhhhcccccceEEEe
Confidence 68999999988654433 3444332 256899999999753221 22333343333322 478999
Q ss_pred CCcccc
Q 011679 231 GNHEIE 236 (479)
Q Consensus 231 GNHD~~ 236 (479)
||||..
T Consensus 75 GNHE~~ 80 (304)
T cd07421 75 GNHDFA 80 (304)
T ss_pred cCChHH
Confidence 999964
No 105
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=96.67 E-value=0.0023 Score=59.67 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=41.4
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLS-TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~-~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
-|++++||+|....... .++.+... +.|-++++||++.....+ . +.++.+.. ..++++.||||..
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s--------~---~vl~~l~~-~~~~~v~GNHE~~ 83 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS--------L---RCLQLLEE-HWVRAVRGNHEQM 83 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCH--------H---HHHHHHHc-CCceEeeCchHHH
Confidence 38999999998765433 33443222 578999999999653321 1 22332222 3467899999974
No 106
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.57 E-value=0.038 Score=52.18 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=37.0
Q ss_pred HHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeee
Q 011679 297 LREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 297 L~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
+++.+++++ .++..+|++.|-..-... ........+...+.+.++|+|+.||.|..+...
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~~-----~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQY-----EPTDEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccCC-----CCCHHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 444444443 357899999997652211 111122334444445789999999999987654
No 107
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.53 E-value=0.0033 Score=59.81 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=40.4
Q ss_pred EEEecCCCCCCcHHH-HHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 163 GIIGDLGQTYNSLST-LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 163 ~~~gD~~~~~~~~~~-l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
.++||+|........ ++.+... +.|.++++||++.....+ .+..+.+..+. ..++.+.||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s--------~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDS--------LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCH--------HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 579999987544333 3333222 579999999999753221 22333333332 3688999999985
No 108
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.52 E-value=0.0069 Score=56.03 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCCCCc-----------------HHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhh
Q 011679 159 SYKFGIIGDLGQTYNS-----------------LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS 220 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~~-----------------~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~ 220 (479)
.-+.++++|.|.+... ...++.+.+. +|+-+|++||+--+-+... ...|+....+++.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~---~~e~~~~~~f~~~~ 95 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSL---RQEKEEVREFLELL 95 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccc---cccHHHHHHHHHHh
Confidence 3467999999987531 1123333333 9999999999986544321 23444444555554
Q ss_pred hccCCeEEcCCCcccc
Q 011679 221 AAYQPWIWSAGNHEIE 236 (479)
Q Consensus 221 ~~~~P~~~v~GNHD~~ 236 (479)
... -|+++.||||-.
T Consensus 96 ~~~-evi~i~GNHD~~ 110 (235)
T COG1407 96 DER-EVIIIRGNHDNG 110 (235)
T ss_pred ccC-cEEEEeccCCCc
Confidence 433 599999999975
No 109
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.32 E-value=0.0061 Score=56.90 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=38.9
Q ss_pred EEecCCCCCCcHHH-HHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc-cCCeEEcCCCcccc
Q 011679 164 IIGDLGQTYNSLST-LEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 236 (479)
Q Consensus 164 ~~gD~~~~~~~~~~-l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 236 (479)
++||+|........ ++.+.....|.+|++||++...... ......+..+.. ..+++.+.||||..
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~--------~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDS--------VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCc--------HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 68999976432221 2222223789999999999653211 122222333221 34799999999985
No 110
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.08 E-value=0.0082 Score=57.41 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=41.9
Q ss_pred eEEEEEecCCCCCCcHHH-HHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLST-LEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~~-l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
++..++||+|........ ++.+.-. ..|-++++||++.....+ ....+.+..+. ..+..+.||||..
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s--------levL~~l~~l~--~~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGS--------LEVLRYVKSLG--DAVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH--------HHHHHHHHhcC--CCeEEEEChhHHH
Confidence 357899999987654433 3444312 568999999999754321 12233333332 2356899999974
No 111
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.04 E-value=0.04 Score=42.15 Aligned_cols=70 Identities=19% Similarity=0.347 Sum_probs=44.0
Q ss_pred CCceEEEEeecCCCCcEEEEEEcCCCCC----CCEEEEeecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEE
Q 011679 58 SPQQVHITQGDYDGKAVIISWVTPHEPG----PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKY 133 (479)
Q Consensus 58 ~P~~v~l~~~~~~~~~~~v~W~t~~~~~----~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y 133 (479)
+|..+++..-. .+++.|.|....... .-.|+|....+... ...... . .-...+.|+||+|+|.|
T Consensus 2 ~P~~l~v~~~~--~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~----~~~~~~-----~-~~~~~~~i~~L~p~t~Y 69 (85)
T PF00041_consen 2 APENLSVSNIS--PTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSD----WQEVTV-----P-GNETSYTITGLQPGTTY 69 (85)
T ss_dssp SSEEEEEEEEC--SSEEEEEEEESSSTSSSESEEEEEEEETTSSSE----EEEEEE-----E-TTSSEEEEESCCTTSEE
T ss_pred cCcCeEEEECC--CCEEEEEEECCCCCCCCeeEEEEEEEeccccee----eeeeee-----e-eeeeeeeeccCCCCCEE
Confidence 47777777653 589999999984222 23577765554330 011111 1 11226788999999999
Q ss_pred EEEeCC
Q 011679 134 YYKIGS 139 (479)
Q Consensus 134 ~Yrv~~ 139 (479)
.+||..
T Consensus 70 ~~~v~a 75 (85)
T PF00041_consen 70 EFRVRA 75 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999964
No 112
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.01 E-value=0.19 Score=47.73 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeee
Q 011679 293 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYR 363 (479)
Q Consensus 293 Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~ 363 (479)
+.+.+++++++++ ..++++||..|.-.-. .. ...+ ....+...+.+.++|+|+.+|.|..|-..-
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~---~~-~p~~-~q~~~a~~lidaGaDiIiG~HpHv~q~~E~ 233 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEY---EN-YPTP-EQRELARALIDAGADIIIGHHPHVIQPVEI 233 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCC---CC-CCCH-HHHHHHHHHHHcCCCEEEeCCCCcccceEE
Confidence 4578888888875 5688999999974211 11 1122 333455555568999999999999887663
No 113
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.93 E-value=0.025 Score=57.62 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.8
Q ss_pred CCCeEEEEEecCCCCCC---------cHHHHHHHH---H-hCCCEEEEcCcccccCcc
Q 011679 157 DASYKFGIIGDLGQTYN---------SLSTLEHYM---E-SGAQTVLFLGDLSYADRY 201 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~---------~~~~l~~i~---~-~~pd~vl~~GD~~y~~~~ 201 (479)
...+||++.+|.|.++. ++.+++.|. + ++.|+||..||++-++..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 46899999999998763 344554443 3 399999999999987543
No 114
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.68 E-value=0.23 Score=46.51 Aligned_cols=191 Identities=20% Similarity=0.234 Sum_probs=86.7
Q ss_pred EEEecCCCCCCc---HHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccccc
Q 011679 163 GIIGDLGQTYNS---LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 238 (479)
Q Consensus 163 ~~~gD~~~~~~~---~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~ 238 (479)
+++||.=...+. ...+..+.+. ++||||..|.++-. |.... .+.+.++++ ..+- ..+.|||=+...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~-G~Git-----~~~~~~L~~---~GvD-viT~GNH~wdkk 70 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAG-GFGIT-----PKIAEELFK---AGVD-VITMGNHIWDKK 70 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTT-TSS-------HHHHHHHHH---HT-S-EEE--TTTTSST
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCC-CCCCC-----HHHHHHHHh---cCCC-EEecCcccccCc
Confidence 357776443321 2233444444 89999999999953 32211 123333332 2333 458999988631
Q ss_pred cCCCccccccccccccccCcCCCC-CCCCcEEEEEeCCEEEEEEcCCCCC--CCChHHHHHHHHHHhhccCCCCCeEEEE
Q 011679 239 TYMGEVVPFKSYLHRYPTPHLASK-SSSPLWYAIRRASAHIIVLSSYSPF--VKYTPQWEWLREELKKVDREKTPWLIVL 315 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~yysf~~g~~~fi~Ldt~~~~--~~~~~Q~~WL~~~L~~~~~~~~~w~Iv~ 315 (479)
+...+-.-..+.--|.|.+. ..+..|..++.++..+-+++-.... .....-+..+++.|++. +.+.+.+||=
T Consensus 71 ----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVD 145 (253)
T PF13277_consen 71 ----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVD 145 (253)
T ss_dssp ----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEE
T ss_pred ----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEE
Confidence 10000000111112333222 2345688899998887777753211 11112333444444443 2467789999
Q ss_pred eccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEE-eCCCC
Q 011679 316 MHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT-VGDGG 394 (479)
Q Consensus 316 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~G~gG 394 (479)
+|.= ......+ .-.+-.-+|.+|+.=|+|....-.++ -++|+.||+ +|.-|
T Consensus 146 FHAE-----------aTSEK~A-~g~~lDGrvsaV~GTHTHVqTaDerI----------------Lp~GTaYiTDvGMtG 197 (253)
T PF13277_consen 146 FHAE-----------ATSEKQA-MGWYLDGRVSAVVGTHTHVQTADERI----------------LPGGTAYITDVGMTG 197 (253)
T ss_dssp EE-S------------HHHHHH-HHHHHBTTBSEEEEESSSS-BS--EE-----------------TTS-EEES---EBE
T ss_pred eecC-----------cHHHHHH-HHHHhCCcEEEEEeCCCCccCchhhc----------------cCCCCEEEecCcccc
Confidence 9852 2222222 23455678999999999985433322 247888987 55555
Q ss_pred CC
Q 011679 395 NQ 396 (479)
Q Consensus 395 ~~ 396 (479)
..
T Consensus 198 ~~ 199 (253)
T PF13277_consen 198 PY 199 (253)
T ss_dssp ES
T ss_pred Cc
Confidence 44
No 115
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.18 Score=42.74 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=53.1
Q ss_pred HHHHHHHHcCccEEEecccccceeeeeccCCcccccCCcccccCCCCCCeEEEeCCCCCCCCCCCCCCCCCCCccceeec
Q 011679 337 AFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREA 416 (479)
Q Consensus 337 ~l~~l~~~~~VdlvlsGH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~G~gG~~~~~~~~~~~~~p~~~~~~~~ 416 (479)
.|.-+-++.+||+.++||+|.++...- +|-.||--|++-.... .. .....
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye~-------------------eg~ffvnPGSaTGAfn----~~-------~t~~~ 147 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYEH-------------------EGKFFVNPGSATGAFN----VS-------DTDII 147 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEEe-------------------CCcEEeCCCcccCCCc----cc-------ccCCC
Confidence 344455678999999999999988762 4456776665422211 01 11113
Q ss_pred cccEEEEEEecccEEEEEEEEcCCCceeeeeeEEEEe
Q 011679 417 SYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 453 (479)
Q Consensus 417 ~~Gf~~l~v~~~t~~~~~~~~~~~g~~~~~D~f~i~~ 453 (479)
...|..|+|...+...+-|.- -||++ .+|.+...|
T Consensus 148 ~PSFvLmDiqg~~~v~YvY~l-idgeV-kVdki~ykK 182 (183)
T KOG3325|consen 148 VPSFVLMDIQGSTVVTYVYRL-IDGEV-KVDKIEYKK 182 (183)
T ss_pred CCceEEEEecCCEEEEEEeee-eCCcE-EEEEEEecC
Confidence 567999999877766555533 46776 467766543
No 116
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=94.84 E-value=0.043 Score=53.86 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHh-----CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc--CCeEEcCCCc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMES-----GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNH 233 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~-----~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNH 233 (479)
++.++||+|..... +..+.+. ..+.+|++||++....... +. ...+-.+... --++.+.|||
T Consensus 52 ~~~vvGDiHG~~~d---L~~il~~~g~~~~~~~~lFLGDyVDRG~~s~-------Ev-l~ll~~lk~~~p~~v~llRGNH 120 (321)
T cd07420 52 QVTICGDLHGKLDD---LFLIFYKNGLPSPENPYVFNGDFVDRGKRSI-------EI-LIILFAFFLVYPNEVHLNRGNH 120 (321)
T ss_pred CeEEEEeCCCCHHH---HHHHHHHcCCCCccceEEEeccccCCCCCcH-------HH-HHHHHHHhhcCCCcEEEecCch
Confidence 68999999987543 2233322 2267999999997543211 22 2222222212 2488899999
Q ss_pred ccc
Q 011679 234 EIE 236 (479)
Q Consensus 234 D~~ 236 (479)
|..
T Consensus 121 E~~ 123 (321)
T cd07420 121 EDH 123 (321)
T ss_pred hhh
Confidence 985
No 117
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=94.78 E-value=0.023 Score=53.23 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCEEEEcCcccccCccccccc--chhhhHHHH----HHHhhhccCCeEEcCCCcccccccCC-------Ccccccc-cc-
Q 011679 186 AQTVLFLGDLSYADRYQFIDV--GVRWDSWGR----FVERSAAYQPWIWSAGNHEIEYMTYM-------GEVVPFK-SY- 250 (479)
Q Consensus 186 pd~vl~~GD~~y~~~~~~~~~--~~~~~~~~~----~~~~~~~~~P~~~v~GNHD~~~~~~~-------~~~~~~~-~~- 250 (479)
|--++..||++...+....++ ..++..+.. ...+.+-.+|+|.-.||||..-+.-. .+.+.|. .|
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H 206 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH 206 (392)
T ss_pred ceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhc
Confidence 445677789998766543321 112222221 11223446899999999998632100 0111110 00
Q ss_pred --ccccccCcCC-CCCCCCcEEEEEeCCEEEEEEcCCCCC-CCC-hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCC
Q 011679 251 --LHRYPTPHLA-SKSSSPLWYAIRRASAHIIVLSSYSPF-VKY-TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE 325 (479)
Q Consensus 251 --~~~~~~p~~~-~~~~~~~yysf~~g~~~fi~Ldt~~~~-~~~-~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~ 325 (479)
-..|..|... .......-||+++|+++.+-+-....- ..+ ..-+-||+.+|.... +..+-++++.|.-+-....
T Consensus 207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~a-adgrpv~LfqhyGwdtfst 285 (392)
T COG5555 207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSA-ADGRPVYLFQHYGWDTFST 285 (392)
T ss_pred CcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeec-cCCCceeehhhhCccceec
Confidence 0112222111 112233468899999988876553210 111 234679999998754 2333488888875532111
Q ss_pred Ccc----------Cc------CHHHHHHHHHHHHHcCccEEEecccccceeee
Q 011679 326 AHF----------ME------GESMRAAFESWFVRYKVDVVFAGHVHAYERSY 362 (479)
Q Consensus 326 ~~~----------~~------~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~ 362 (479)
..| .+ ....+..|...++-|+|.-.+.||-|.+.-.+
T Consensus 286 eawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~may 338 (392)
T COG5555 286 EAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFNMAY 338 (392)
T ss_pred cccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccceee
Confidence 111 00 12346778888889999999999999874444
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=94.71 E-value=0.049 Score=53.30 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=39.2
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccC--CeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~~ 236 (479)
+++++||+|....... .+........+-++++||++...... -+....+..+.-.. -++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s--------~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFS--------IECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCCh--------HHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5899999998754322 22211111347899999999653221 11122222232223 478999999985
No 119
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=94.33 E-value=0.072 Score=51.27 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc--cCCeEEcCCCcccc
Q 011679 160 YKFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIE 236 (479)
Q Consensus 160 ~~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~ 236 (479)
.+++++||+|....... .++.+.....+-++++||++..+... .+....+..+.- ..-++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s--------~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFS--------IEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCCh--------HHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 35899999997754322 22222222567899999999643221 111122222221 23588999999985
No 120
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.21 E-value=0.24 Score=53.18 Aligned_cols=73 Identities=22% Similarity=0.438 Sum_probs=47.9
Q ss_pred CCCcEEEEEEcCCCCCCCEEEEe----ecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEEEeCC------
Q 011679 70 DGKAVIISWVTPHEPGPSTVSYG----TSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGS------ 139 (479)
Q Consensus 70 ~~~~~~v~W~t~~~~~~~~v~y~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Yrv~~------ 139 (479)
..++++++|...+.+......|. .+.... ..|.. -..-..+++|+||+|+|.|-+||..
T Consensus 455 ~~~sitlsW~~p~~png~ildYEvky~ek~~~e--------~~~~~---~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~ 523 (996)
T KOG0196|consen 455 TSDSITLSWSEPDQPNGVILDYEVKYYEKDEDE--------RSYST---LKTKTTTATITGLKPGTVYVFQVRARTAAGY 523 (996)
T ss_pred ccCceEEecCCCCCCCCcceeEEEEEeeccccc--------cceeE---EecccceEEeeccCCCcEEEEEEEEecccCC
Confidence 45899999999877665544443 332110 11100 0112346889999999999999953
Q ss_pred CCCceeEEEECCCC
Q 011679 140 GDSSREFWFQTPPK 153 (479)
Q Consensus 140 ~~~s~~~~f~T~p~ 153 (479)
|..|....|.|.|.
T Consensus 524 G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 524 GPYSGKHEFQTLPS 537 (996)
T ss_pred CCCCCceeeeecCc
Confidence 45688999999875
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=93.77 E-value=0.087 Score=51.00 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhc--cCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~ 236 (479)
.+.++||+|....... .+........+-+|++||++..+... -+....+..+.- ...++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s--------~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYS--------VETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCH--------HHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 4889999998654322 22221111446789999999653211 111122222222 23589999999974
No 122
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.54 E-value=0.11 Score=51.91 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=38.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHh----CC-CEEEEcCcccccCcccccccchhhhHHHHHHHhhhc--cCCeEEcCCCc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMES----GA-QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNH 233 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~----~p-d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNH 233 (479)
++.++||+|..... +..+.+. .. +.+|++||++..+... -+....+..+.- ..-++.+.|||
T Consensus 67 ~i~VvGDIHG~~~d---L~~ll~~~g~~~~~~~ylFLGDyVDRGp~S--------lEvl~lL~~lki~~p~~v~lLRGNH 135 (377)
T cd07418 67 EVVVVGDVHGQLHD---VLFLLEDAGFPDQNRFYVFNGDYVDRGAWG--------LETFLLLLSWKVLLPDRVYLLRGNH 135 (377)
T ss_pred CEEEEEecCCCHHH---HHHHHHHhCCCCCCceEEEeccccCCCCCh--------HHHHHHHHHHhhccCCeEEEEeeec
Confidence 68999999987543 2223322 22 4589999999643221 111222222222 23488999999
Q ss_pred ccc
Q 011679 234 EIE 236 (479)
Q Consensus 234 D~~ 236 (479)
|..
T Consensus 136 E~~ 138 (377)
T cd07418 136 ESK 138 (377)
T ss_pred ccc
Confidence 985
No 123
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=93.51 E-value=0.11 Score=50.63 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc--CCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 236 (479)
.++++||+|....... .++.......+-+|++||++..+.... +.+ ..+..+.-. ..++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~-------e~i-~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL-------ETI-CLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcH-------HHH-HHHHHhhhhCCCcEEEEecccchh
Confidence 4899999998653322 222221124567889999996532211 111 222222212 2488999999985
No 124
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.53 Score=49.05 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHc-CccE-EEecccccce
Q 011679 291 TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDV-VFAGHVHAYE 359 (479)
Q Consensus 291 ~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~Vdl-vlsGH~H~y~ 359 (479)
-.|.+|-.+.++. .+.+-+|++.|.|.-.... .. ..+..+...+ ++++ ||-||.|...
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~~e-----~~---~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDDDE-----WK---SLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccchh-----hh---hHHHHHhhhCCCCceEEECchhhhhh
Confidence 3578888888876 6677789999988742111 11 1233333333 5677 9999999743
No 125
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=93.17 E-value=0.13 Score=50.10 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccC--CeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~~ 236 (479)
.+.++||+|....... .++.+.....+-++++||++..+... -+....+-.+.-.. -++.+.||||..
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s--------~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNS--------VETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCH--------HHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 3788999998654322 22221112456789999999753221 11112222222222 488999999975
No 126
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=93.12 E-value=3.1 Score=39.37 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=42.4
Q ss_pred CCCCeEEEEEecCCCCCCcHHHHHHHHHh-CCCEEEEcCcccccCcccccccchhh-hHHHHHHHhhhccCCeEEcCCCc
Q 011679 156 PDASYKFGIIGDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 156 ~~~~~~f~~~gD~~~~~~~~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v~GNH 233 (479)
...-.||+.++|.|..... +... +-|+++++||...-. ..+| ..+.+.+-.+. ..=-+++.|||
T Consensus 58 ~~~~~r~VcisdtH~~~~~------i~~~p~gDvlihagdfT~~g-------~~~ev~~fn~~~gslp-h~yKIVIaGNH 123 (305)
T KOG3947|consen 58 GPGYARFVCISDTHELTFD------INDIPDGDVLIHAGDFTNLG-------LPEEVIKFNEWLGSLP-HEYKIVIAGNH 123 (305)
T ss_pred CCCceEEEEecCcccccCc------cccCCCCceEEeccCCcccc-------CHHHHHhhhHHhccCc-ceeeEEEeecc
Confidence 3467899999999976432 2222 679999999999532 1222 22222222221 11247889999
Q ss_pred cccccc
Q 011679 234 EIEYMT 239 (479)
Q Consensus 234 D~~~~~ 239 (479)
|...+.
T Consensus 124 ELtFd~ 129 (305)
T KOG3947|consen 124 ELTFDH 129 (305)
T ss_pred ceeecc
Confidence 997653
No 127
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.32 Score=49.53 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=53.4
Q ss_pred CCCeEEEEEecCCCCCCcH--HHHHHHHHh---------CCCEEEEcCcccccCccccc--------ccchhhhHHHHHH
Q 011679 157 DASYKFGIIGDLGQTYNSL--STLEHYMES---------GAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFV 217 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~~~--~~l~~i~~~---------~pd~vl~~GD~~y~~~~~~~--------~~~~~~~~~~~~~ 217 (479)
...+++++++|.|.+...+ ..+..+.+. +...++.+||.+..-+.... +.-.+++.+.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 3578999999999875321 122222221 44789999999974433211 1234566667777
Q ss_pred HhhhccCCeEEcCCCcccc
Q 011679 218 ERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 218 ~~~~~~~P~~~v~GNHD~~ 236 (479)
..+...+-++..|||||..
T Consensus 303 ~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred hhCCCCceEEEecCCCCcc
Confidence 7777788899999999984
No 128
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=92.69 E-value=0.17 Score=49.62 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc--CCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 236 (479)
.++++||+|....... .++.......+-.|++||++..+... .+.+ ..+..+.-. ..++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s-------~evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQS-------LETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCc-------HHHH-HHHHHhcccCCCceEEEecccchh
Confidence 4899999997643222 22211111446788999999753221 1121 222222222 2488999999985
No 129
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=92.25 E-value=0.2 Score=49.23 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCccEEEeccccc
Q 011679 335 RAAFESWFVRYKVDVVFAGHVHA 357 (479)
Q Consensus 335 ~~~l~~l~~~~~VdlvlsGH~H~ 357 (479)
.+.+...+++.+.++++-||.=.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 45778889999999999999865
No 130
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=91.80 E-value=0.3 Score=47.99 Aligned_cols=22 Identities=5% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCccEEEecccc
Q 011679 335 RAAFESWFVRYKVDVVFAGHVH 356 (479)
Q Consensus 335 ~~~l~~l~~~~~VdlvlsGH~H 356 (479)
.+.+...+++++.++++=||.=
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe~ 263 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHEC 263 (311)
T ss_pred HHHHHHHHHHCCCeEEEEechh
Confidence 4577888999999999999973
No 131
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=91.47 E-value=0.2 Score=48.69 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=37.3
Q ss_pred EEEEecCCCCCCcHH-HHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhh--hccCCeEEcCCCcccc
Q 011679 162 FGIIGDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS--AAYQPWIWSAGNHEIE 236 (479)
Q Consensus 162 f~~~gD~~~~~~~~~-~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~~~v~GNHD~~ 236 (479)
+.++||+|....... .++.+.....+-++++||++..+... .+.+ ..+-.+ .....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s-------~evl-~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHS-------VETI-TLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCH-------HHHH-HHHHHHhhccCCeEEEEecccchH
Confidence 688999997654322 22222111344678999999653221 1111 111111 1233589999999975
No 132
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=89.94 E-value=2 Score=32.26 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.1
Q ss_pred eEEEEEeCCCCCCCEEEEEeCC
Q 011679 118 YIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 118 ~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
-..++.+.+|.|++.|.+|+..
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cccEEEEccccCCCEEEEEEEE
Confidence 3456788999999999999853
No 133
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=89.16 E-value=3.1 Score=30.11 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=37.2
Q ss_pred EEEEeecCCCCcEEEEEEcCCCCC--CCEEEEeecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEEEeCC
Q 011679 62 VHITQGDYDGKAVIISWVTPHEPG--PSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 62 v~l~~~~~~~~~~~v~W~t~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
+.+.... .+++.|+|....... .-.++|........ ....... .......+.+.+|+|++.|.+++..
T Consensus 7 ~~~~~~~--~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 7 LRVTDVT--STSVTLSWEPPPDDGITGYIVGYRVEYREEG--SSWKEVN------VTPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred EEEEEEe--CCEEEEEECCCCCCCCCccEEEEEEEEecCC--CccEEEE------ecCCccEEEEeCcCCCCEEEEEEEE
Confidence 4555433 348999998553221 23555554332211 0001000 0111467889999999999999854
No 134
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=87.13 E-value=0.77 Score=26.88 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=11.6
Q ss_pred hhhhhHHHHHHHHHHH
Q 011679 3 KMRLLLHLALTTAIVL 18 (479)
Q Consensus 3 ~~r~~l~~~~~~~~~~ 18 (479)
+||.||+.++++++++
T Consensus 3 sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAA 18 (26)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7999999876655433
No 135
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=84.86 E-value=0.99 Score=41.46 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=41.9
Q ss_pred EEEEecCCCCCC--cHHHHHHHH-----HhCCCEEEEcCcccccCccccc------ccchhhh---HHHHHHHhhhccCC
Q 011679 162 FGIIGDLGQTYN--SLSTLEHYM-----ESGAQTVLFLGDLSYADRYQFI------DVGVRWD---SWGRFVERSAAYQP 225 (479)
Q Consensus 162 f~~~gD~~~~~~--~~~~l~~i~-----~~~pd~vl~~GD~~y~~~~~~~------~~~~~~~---~~~~~~~~~~~~~P 225 (479)
|++++|.+.... ..+.+..+. +.+|+.+|++|+++........ .+..... .+.+.+..+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 578899988743 244455544 3379999999999975332110 0011111 12233444556789
Q ss_pred eEEcCCCcccccc
Q 011679 226 WIWSAGNHEIEYM 238 (479)
Q Consensus 226 ~~~v~GNHD~~~~ 238 (479)
++.+||+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999998643
No 136
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=80.16 E-value=4.2 Score=46.05 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=46.5
Q ss_pred CCceEEEEeecCCCCcEEEEEEcCCCCCC--C----EEEEeecCCCCc---eEEEeEEEEEeeecceeceEEEEEeCCCC
Q 011679 58 SPQQVHITQGDYDGKAVIISWVTPHEPGP--S----TVSYGTSADKFD---FTAEGTVNNYTFYKYKSGYIHQCLVDGLE 128 (479)
Q Consensus 58 ~P~~v~l~~~~~~~~~~~v~W~t~~~~~~--~----~v~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~gL~ 128 (479)
.|+.|.+... .++++.|.|........ . .++|+..+.... ..+.|. .+.| .+++|+
T Consensus 618 PP~Nl~lev~--sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n-----------~~~~--l~~~Le 682 (1381)
T KOG4221|consen 618 PPQNLSLEVV--SSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGN-----------TTQY--LFNGLE 682 (1381)
T ss_pred CCcceEEEec--CCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccc-----------hhhh--HhhcCC
Confidence 3565776653 46899999988743221 1 244443332211 122221 1222 357899
Q ss_pred CCCEEEEEeCC------CCCceeEEEECCC
Q 011679 129 YDTKYYYKIGS------GDSSREFWFQTPP 152 (479)
Q Consensus 129 p~t~Y~Yrv~~------~~~s~~~~f~T~p 152 (479)
|+|.|.+|+.. |..|+..++.|+-
T Consensus 683 p~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 683 PNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred CCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 99999999943 3457777887753
No 137
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=75.79 E-value=22 Score=40.66 Aligned_cols=85 Identities=15% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCCcEEEEEEcCCCCCCCEEEEe----ecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEEEEEeCC------
Q 011679 70 DGKAVIISWVTPHEPGPSTVSYG----TSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKYYYKIGS------ 139 (479)
Q Consensus 70 ~~~~~~v~W~t~~~~~~~~v~y~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y~Yrv~~------ 139 (479)
...++.|.|+...-.+..+..|. ..+. +.-..+ ..-.++.+|+||+|.|.|.|||..
T Consensus 533 s~~ti~v~WepP~~~n~~I~~yk~~ys~~~~-------~~~~~~------~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~ 599 (1381)
T KOG4221|consen 533 SPTTILVTWEPPPFGNGPITGYKLFYSEDDT-------GKELRV------ENNATEYTINGLEKYTEYSIRVVAYNSAGS 599 (1381)
T ss_pred CcceEEEEecCCCCCCCCceEEEEEEEcCCC-------CceEEE------ecCccEEEeecCCCccceEEEEEEecCCCC
Confidence 35789999998864444444443 2211 111111 112455678899999999999943
Q ss_pred CCCceeEEEECCCCCCCC--CCeEEEEEec
Q 011679 140 GDSSREFWFQTPPKIDPD--ASYKFGIIGD 167 (479)
Q Consensus 140 ~~~s~~~~f~T~p~~~~~--~~~~f~~~gD 167 (479)
+..|...+++|+..-.+. ..++..+.+-
T Consensus 600 g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sS 629 (1381)
T KOG4221|consen 600 GVSSADITVRTLSDVPSAPPQNLSLEVVSS 629 (1381)
T ss_pred CCCCCceEEEeccCCCCCCCcceEEEecCC
Confidence 345777788876432111 2355554443
No 138
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=74.43 E-value=19 Score=40.70 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCceEEEEeecCCCCcEEEEEEcCCC----CCCCEEEEeecCCCCceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEE
Q 011679 58 SPQQVHITQGDYDGKAVIISWVTPHE----PGPSTVSYGTSADKFDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKY 133 (479)
Q Consensus 58 ~P~~v~l~~~~~~~~~~~v~W~t~~~----~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y 133 (479)
+|..+.+... ..+++.|+|....- ...-.|+|+...+... ...... ..+-.-...|+||+|+|.|
T Consensus 822 ap~~~~~~~~--s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~-----~~~~~~----i~~~~~~~~ltgL~~~T~Y 890 (1051)
T KOG3513|consen 822 APTKLSAKPL--SSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEG-----SLSRVQ----IAGNRTSWRLTGLEPNTKY 890 (1051)
T ss_pred CCccceeecc--cCceEEEEecCcCccCCccceeEEEEEEcCCCcc-----ccccee----ecCCcceEeeeCCCCCceE
Confidence 4666655543 35899999955421 2235789988776531 100000 0122335679999999999
Q ss_pred EEEeCC------CCCceeEEEECCCCCC
Q 011679 134 YYKIGS------GDSSREFWFQTPPKID 155 (479)
Q Consensus 134 ~Yrv~~------~~~s~~~~f~T~p~~~ 155 (479)
+..+.+ |..|...+..|.+++.
T Consensus 891 ~~~vrA~nsaG~Gp~s~~~~~tt~k~pP 918 (1051)
T KOG3513|consen 891 RFYVRAYTSAGGGPASSEENVTTKKAPP 918 (1051)
T ss_pred EEEEEEecCCCCCCCccceeccccCCCC
Confidence 999853 2334444445555443
No 139
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=70.10 E-value=5.3 Score=39.51 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=38.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHHH-hCCC-EEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYME-SGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~-~~pd-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
-+.++||.|......-.+-.... ..|+ -.+++||++..+....+. -.+.-.++- .-.--++...||||..
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~-----i~LL~a~Ki-~yp~~~~lLRGNHE~~ 131 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLET-----ICLLFALKI-KYPENVFLLRGNHECA 131 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEE-----eehhhhhhh-hCCceEEEeccccccc
Confidence 47889999988653322222222 2244 468999999764432111 000011111 1123589999999986
No 140
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=68.21 E-value=7.2 Score=36.31 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHh-CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhcc--CCeEEcCCCcccc
Q 011679 162 FGIIGDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 236 (479)
Q Consensus 162 f~~~gD~~~~~~~~~~l~~i~~~-~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 236 (479)
+.++||+|......-.+=.+... .-.=-|++||++...-+ + -+.+.- +-.+... -.+..+.||||..
T Consensus 45 vtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVDRG~~-S------vEt~lL-Ll~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVDRGYY-S------VETFLL-LLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHHhCCCCCCCceEeecchhccccc-h------HHHHHH-HHHHhhcCcceeEEeeccchhh
Confidence 57899999864322222222222 22335788999965321 1 122321 1222222 3478899999975
No 141
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=66.82 E-value=7.3 Score=36.54 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=37.3
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHhCCCE-EEEcCcccccCcccccccchhhhHHHHHHHhhhcc--CCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMESGAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~~pd~-vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 236 (479)
-..++||.|......-.+-.+....||. .++.||++...-. + .+--..+-.+.-. --+-.+.||||..
T Consensus 61 pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvdrGy~-S-------vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVDRGYY-S-------VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred ceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeecccccc-h-------HHHHHHHHHhhccccceeEEecCchHHH
Confidence 3678999998754332222333335554 5789999964321 1 1111222222211 2467789999985
No 142
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=66.37 E-value=22 Score=34.28 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCCeEEEEEecCCCCCC-cHHHHHHHHHh---------CCCEEEEcCcccccC---ccccc-ccchhhhHHHH-HHH---
Q 011679 157 DASYKFGIIGDLGQTYN-SLSTLEHYMES---------GAQTVLFLGDLSYAD---RYQFI-DVGVRWDSWGR-FVE--- 218 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~-~~~~l~~i~~~---------~pd~vl~~GD~~y~~---~~~~~-~~~~~~~~~~~-~~~--- 218 (479)
+...+|+++||.+.... ....++.+-+. .|-.+|+.|+++... +.... .|....+.+.. .+.
T Consensus 25 ~~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp 104 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFK 104 (291)
T ss_pred CCceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhCh
Confidence 45789999999998653 22333333221 288999999998542 10000 01222222222 121
Q ss_pred hhhccCCeEEcCCCcccc
Q 011679 219 RSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 219 ~~~~~~P~~~v~GNHD~~ 236 (479)
.+.++.-++.|||..|-+
T Consensus 105 ~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 105 LILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHhcCeEEEECCCCCCC
Confidence 234566799999999974
No 143
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=65.60 E-value=6.3 Score=28.90 Aligned_cols=14 Identities=29% Similarity=-0.040 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHH
Q 011679 3 KMRLLLHLALTTAI 16 (479)
Q Consensus 3 ~~r~~l~~~~~~~~ 16 (479)
+||.||+.++++++
T Consensus 10 sRR~Flk~lg~~aa 23 (66)
T TIGR02811 10 SRRDLLKGLGVGAA 23 (66)
T ss_pred cHHHHHHHHHHHHH
Confidence 69999997665443
No 144
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=64.58 E-value=19 Score=33.89 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHhCCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 157 DASYKFGIIGDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 157 ~~~~~f~~~gD~~~~~~~~~~l~~i~~~~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
++..+|++.+|.+... ....++.+.+.+|+++|+.|=.+|-.+.... ....+.-.+.++.+....+--.+.+-|=..
T Consensus 174 dg~~~i~faSDvqGp~-~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~--~~~~E~~irNl~~ii~~~~~~lViDHHllR 250 (304)
T COG2248 174 DGKSSIVFASDVQGPI-NDEALEFILEKRPDVLIIGGPPTYLLGYRVG--PKSLEKGIRNLERIIEETNATLVIDHHLLR 250 (304)
T ss_pred cCCeEEEEcccccCCC-ccHHHHHHHhcCCCEEEecCCchhHhhhhcC--hHHHHHHHHHHHHHHHhCcceEEEeehhhc
Confidence 4578999999997653 3667888988999999999999976554211 111123345566666666666677777654
No 145
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=59.53 E-value=30 Score=38.09 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred CceEEEEeecCCCCcEEEEEEcCCCCCC-----CEEEEeecCCCCc-----eEEEeEE----EEEeeec-ceeceEE-EE
Q 011679 59 PQQVHITQGDYDGKAVIISWVTPHEPGP-----STVSYGTSADKFD-----FTAEGTV----NNYTFYK-YKSGYIH-QC 122 (479)
Q Consensus 59 P~~v~l~~~~~~~~~~~v~W~t~~~~~~-----~~v~y~~~~~~~~-----~~~~~~~----~~~~~~~-~~~~~~~-~v 122 (479)
+.-+++...-...+++.++|.....+.. -.+.|...+..-. ..+-|.. ......+ ...+-+| ..
T Consensus 489 ~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~ 568 (1025)
T KOG4258|consen 489 DLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGF 568 (1025)
T ss_pred cceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccce
Confidence 4446666655567899999998764421 2567776663211 1111211 0000010 0112234 78
Q ss_pred EeCCCCCCCEEEEEeCCC----------CCceeEEEECCCCCCCCCCeEEEEEecCC
Q 011679 123 LVDGLEYDTKYYYKIGSG----------DSSREFWFQTPPKIDPDASYKFGIIGDLG 169 (479)
Q Consensus 123 ~l~gL~p~t~Y~Yrv~~~----------~~s~~~~f~T~p~~~~~~~~~f~~~gD~~ 169 (479)
.+.||+|.|.|-|-|..- +.|+++.++|.|.. +..++..+..++..
T Consensus 569 ~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~-PspPl~~ls~snsS 624 (1025)
T KOG4258|consen 569 LLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI-PSPPLDVLSKSNSS 624 (1025)
T ss_pred ehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCC-CCCcchhhhccCcc
Confidence 899999999999988531 46899999998864 34577777776654
No 146
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=59.15 E-value=8.5 Score=33.92 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=22.7
Q ss_pred eEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceee
Q 011679 311 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 361 (479)
Q Consensus 311 w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~ 361 (479)
..|+++|.|..... . +.+.+++|+||+|.....
T Consensus 108 ~~i~l~H~~~~~~~------~------------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 108 RRVYLSHYPILEWN------G------------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred EEEEEEeCCcccCC------C------------CCCCeEEEEeeeCCCCCC
Confidence 57999997653210 0 346789999999986554
No 147
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=55.80 E-value=11 Score=22.49 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHH
Q 011679 3 KMRLLLHLALTTAI 16 (479)
Q Consensus 3 ~~r~~l~~~~~~~~ 16 (479)
+||.||+.+++.++
T Consensus 2 sRR~Flk~~~~~~a 15 (29)
T TIGR01409 2 SRRDFLKGAAAAGA 15 (29)
T ss_pred chhhhHHHHHHHHH
Confidence 69999998765443
No 148
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=53.46 E-value=14 Score=33.70 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=35.6
Q ss_pred EEEEecCCCCCCcHHHHHHHHHh---CCCE-EEEcCcccccCcccccccchhhhHHHHHHHhhhccCC--eEEcCCCccc
Q 011679 162 FGIIGDLGQTYNSLSTLEHYMES---GAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP--WIWSAGNHEI 235 (479)
Q Consensus 162 f~~~gD~~~~~~~~~~l~~i~~~---~pd~-vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P--~~~v~GNHD~ 235 (479)
+-++||+|.... . +-++-+. -||- -|++||++...-+.. +.|. .+--+.++.| +-...||||.
T Consensus 48 VTvCGDIHGQFy--D-L~eLFrtgG~vP~tnYiFmGDfVDRGyySL-------EtfT-~l~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 48 VTVCGDIHGQFY--D-LLELFRTGGQVPDTNYIFMGDFVDRGYYSL-------ETFT-LLLLLKARYPAKITLLRGNHES 116 (306)
T ss_pred eeEeeccchhHH--H-HHHHHHhcCCCCCcceEEeccccccccccH-------HHHH-HHHHHhhcCCceeEEeeccchh
Confidence 568999987642 1 2222222 3443 468899997533221 2332 2223334443 6678999997
Q ss_pred c
Q 011679 236 E 236 (479)
Q Consensus 236 ~ 236 (479)
.
T Consensus 117 R 117 (306)
T KOG0373|consen 117 R 117 (306)
T ss_pred h
Confidence 5
No 149
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=52.41 E-value=11 Score=39.92 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccccc
Q 011679 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEY 237 (479)
Q Consensus 185 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~ 237 (479)
-.|-+-++||+...+..+ +. .+..+....-+=..|||||+-+
T Consensus 184 ~VDhLHIvGDIyDRGp~p--------d~---ImD~Lm~~hsvDIQWGNHDIlW 225 (640)
T PF06874_consen 184 AVDHLHIVGDIYDRGPRP--------DK---IMDRLMNYHSVDIQWGNHDILW 225 (640)
T ss_pred hhhheeecccccCCCCCh--------hH---HHHHHhcCCCccccccchHHHH
Confidence 788899999998654321 23 3444444344556899999853
No 150
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=49.86 E-value=89 Score=25.61 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=8.4
Q ss_pred CCcEEEEEEcCCC
Q 011679 71 GKAVIISWVTPHE 83 (479)
Q Consensus 71 ~~~~~v~W~t~~~ 83 (479)
...|.-.|+|.++
T Consensus 67 ~~~VqY~WETGDD 79 (118)
T PF07803_consen 67 SNVVQYIWETGDD 79 (118)
T ss_pred CceeEEEEecCCc
Confidence 3566677777754
No 151
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=46.15 E-value=22 Score=23.37 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=6.4
Q ss_pred hhhhhHHHH
Q 011679 3 KMRLLLHLA 11 (479)
Q Consensus 3 ~~r~~l~~~ 11 (479)
+||+||..+
T Consensus 10 ~RRdFL~~a 18 (41)
T PF10399_consen 10 TRRDFLTIA 18 (41)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 589998543
No 152
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=44.97 E-value=75 Score=30.96 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred EEEeCCCCCCCEEEEEeCC-----CCCc-eeEEE-------ECCCCCCCCCCeEEEEEecCCC
Q 011679 121 QCLVDGLEYDTKYYYKIGS-----GDSS-REFWF-------QTPPKIDPDASYKFGIIGDLGQ 170 (479)
Q Consensus 121 ~v~l~gL~p~t~Y~Yrv~~-----~~~s-~~~~f-------~T~p~~~~~~~~~f~~~gD~~~ 170 (479)
+..|.+|+|+|+||+-|-. +..+ -.+.| ++.|..=.++.+..+.++..+.
T Consensus 16 ~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g 78 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGG 78 (300)
T ss_pred eEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCc
Confidence 3457899999999999732 1111 11222 2233333356777787777765
No 153
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=43.11 E-value=1.2e+02 Score=34.62 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=44.8
Q ss_pred CCceEEEEeecCCCCcEEEEEEcCCCCCCCEEEEeecCCC----CceEEEeEEEEEeeecceeceEEEEEeCCCCCCCEE
Q 011679 58 SPQQVHITQGDYDGKAVIISWVTPHEPGPSTVSYGTSADK----FDFTAEGTVNNYTFYKYKSGYIHQCLVDGLEYDTKY 133 (479)
Q Consensus 58 ~P~~v~l~~~~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~gL~p~t~Y 133 (479)
+|.+|++.--. .+.+.++|....+-.+++..|-..... .+..+. +.-. + ..+- +.+++-+|.|-..|
T Consensus 617 pP~~v~~~~i~--~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~----~-~~~~-~sa~vv~L~Pwv~Y 687 (1051)
T KOG3513|consen 617 PPPDVHVDDIS--DTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPG----N-ITGD-ESATVVNLSPWVEY 687 (1051)
T ss_pred CCCceeEeeec--cceEEEEeecCCCCCCCceEEeEEecCCCCCcceEee-ECCC----c-ccCc-cceeEEccCCCcce
Confidence 46677775433 478999999886554556666543321 222222 2111 1 1222 55888899999999
Q ss_pred EEEeCC
Q 011679 134 YYKIGS 139 (479)
Q Consensus 134 ~Yrv~~ 139 (479)
.+||.+
T Consensus 688 eFRV~A 693 (1051)
T KOG3513|consen 688 EFRVVA 693 (1051)
T ss_pred EEEEEE
Confidence 999954
No 154
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.39 E-value=20 Score=34.08 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCcc-EEEecccccc
Q 011679 295 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD-VVFAGHVHAY 358 (479)
Q Consensus 295 ~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd-lvlsGH~H~y 358 (479)
+.|+..|+..++-..+ +.-.|.| ..++-+.+.+|++++++| +||+||+-..
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 166 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK-----------EKEMPEKVLDLIEEVRPDILVITGHDAYS 166 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec-----------chhchHHHHHHHHHhCCCEEEEeCchhhh
Confidence 4588888775433333 3333432 123456889999999999 7899999653
No 155
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=41.50 E-value=26 Score=33.57 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=34.0
Q ss_pred HHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCcc-EEEecccccc
Q 011679 295 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD-VVFAGHVHAY 358 (479)
Q Consensus 295 ~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~Vd-lvlsGH~H~y 358 (479)
+.|+..|+..++-..+ +.-.|.| ..++-+.+.+|+.++++| +||+||+-..
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 4588888765333333 3333432 234567889999999999 7899999753
No 156
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=39.89 E-value=29 Score=34.17 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHh--CCC--EEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCcccc
Q 011679 161 KFGIIGDLGQTYNSLSTLEHYMES--GAQ--TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 236 (479)
Q Consensus 161 ~f~~~gD~~~~~~~~~~l~~i~~~--~pd--~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 236 (479)
-+-++||+|.... ..++ +-+. .|. =-+++||++..+-. +.+ - -.|.-.++- .-..-++...||||-.
T Consensus 89 PiTVCGDIHGQf~--DLmK-LFEVGG~PA~t~YLFLGDYVDRGyF-SiE--C--vlYLwsLKi-~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQFF--DLMK-LFEVGGSPANTRYLFLGDYVDRGYF-SIE--C--VLYLWSLKI-NYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchHHH--HHHH-HHHccCCcccceeEeecccccccee-eee--h--HHHHHHHhc-CCCCeEEEecCCcchh
Confidence 3678999998642 2222 2222 232 35789999975322 111 0 111111221 1123477899999974
No 157
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=36.95 E-value=36 Score=31.08 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.5
Q ss_pred CccEEEecccccce
Q 011679 346 KVDVVFAGHVHAYE 359 (479)
Q Consensus 346 ~VdlvlsGH~H~y~ 359 (479)
+.+++++||+|...
T Consensus 168 ~~~~iV~GHTh~~~ 181 (207)
T cd07424 168 GVDAVVHGHTPVKR 181 (207)
T ss_pred CCCEEEECCCCCCc
Confidence 45899999999854
No 158
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.73 E-value=46 Score=34.05 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=39.7
Q ss_pred CeEEEEEecCCCCCC-cHHHHHHHHHh--CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCc
Q 011679 159 SYKFGIIGDLGQTYN-SLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 233 (479)
Q Consensus 159 ~~~f~~~gD~~~~~~-~~~~l~~i~~~--~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 233 (479)
+.+|+++||...... ..+.++.+.+. ..|++|++|++.-.+.. ...|..|.+-... -.+|.|+.-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~-----~~e~~~ykng~~~--vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQ-----NAEVEKYKNGTKK--VPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccc-----hhHHHHHhcCCcc--CceeEEEecCCC
Confidence 369999999865432 22334444444 58999999999864221 2333333322211 246778777665
No 159
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=36.06 E-value=44 Score=28.92 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=19.9
Q ss_pred EeCCCCCCCEEEEE--eCCC---CCceeEEEECCCC
Q 011679 123 LVDGLEYDTKYYYK--IGSG---DSSREFWFQTPPK 153 (479)
Q Consensus 123 ~l~gL~p~t~Y~Yr--v~~~---~~s~~~~f~T~p~ 153 (479)
.+++|.|||+|+.+ |..+ ..|.+..-.|.|.
T Consensus 105 qVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 105 QVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred EeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 57899999999755 4444 2344445555554
No 160
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=36.00 E-value=37 Score=34.68 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=25.8
Q ss_pred CCCEEEEcCcccccCcccccccchhhhHHHHHHHhhhccCCeEEcCCCccccc
Q 011679 185 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEY 237 (479)
Q Consensus 185 ~pd~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~ 237 (479)
-.|-+-.+||+...+..+ +.. +..+..-..+=..|||||+-+
T Consensus 190 vVDhLHiVGDIyDRGP~p--------d~I---md~L~~yhsvDiQWGNHDilW 231 (648)
T COG3855 190 VVDHLHIVGDIYDRGPYP--------DKI---MDTLINYHSVDIQWGNHDILW 231 (648)
T ss_pred hhhheeeecccccCCCCc--------hHH---HHHHhhcccccccccCcceEE
Confidence 788888999997543322 233 333332223446799999853
No 161
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.98 E-value=58 Score=26.68 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCCCEEEEEeCC
Q 011679 117 GYIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 117 ~~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
+-++++.|.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45778999999999999999973
No 162
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.45 E-value=62 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCCCCEEEEEeCC
Q 011679 117 GYIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 117 ~~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
+-+.++.+.++.+|+.|.|||..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45778899999999999999975
No 163
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=31.38 E-value=50 Score=31.06 Aligned_cols=43 Identities=12% Similarity=0.413 Sum_probs=21.5
Q ss_pred EEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEeccccc
Q 011679 313 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHA 357 (479)
Q Consensus 313 Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~ 357 (479)
++++|||++-...... ............+.++++ .+++-|+..
T Consensus 56 lIItHHP~~f~~~~~~-~~~~~~~~~~~~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSL-TGDDYKGKIIEKLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp EEEESS-SSSSTSSHC-HCHSHHHHHHHHHHHTT--EEEEESHHH
T ss_pred EEEEcCchhhcCCccc-cccchhhHHHHHHHHCCC-EEEEecccc
Confidence 7788999865333221 112222333334445777 567888764
No 164
>PRK09898 hypothetical protein; Provisional
Probab=29.18 E-value=25 Score=32.24 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=10.2
Q ss_pred CchhhhhHHHHHH
Q 011679 1 MEKMRLLLHLALT 13 (479)
Q Consensus 1 ~~~~r~~l~~~~~ 13 (479)
|.+||.||+.+++
T Consensus 12 ~~~RR~flk~~~~ 24 (208)
T PRK09898 12 GLTRLEFLRISGK 24 (208)
T ss_pred chhHHHHHHhhcc
Confidence 5689999997653
No 165
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.08 E-value=69 Score=24.44 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCCCEEEEEeCCC
Q 011679 118 YIHQCLVDGLEYDTKYYYKIGSG 140 (479)
Q Consensus 118 ~~~~v~l~gL~p~t~Y~Yrv~~~ 140 (479)
-++++.+.++ +|..|.|++..+
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~~ 61 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDDG 61 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECCC
Confidence 3567888999 999999999843
No 166
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=27.69 E-value=1.4e+02 Score=29.99 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHhhccCCCCCeEEEEecccc-ccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccceeeee
Q 011679 297 LREELKKVDREKTPWLIVLMHVPI-YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYR 363 (479)
Q Consensus 297 L~~~L~~~~~~~~~w~Iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~r~~~ 363 (479)
++.+++.++ +.++-+|++.|+-. |.... ...+.++..-+...++++++.+|-|..|-.+.
T Consensus 213 ~~~~v~~a~-k~adlviv~~HwG~ey~~~p------~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~ 273 (372)
T COG2843 213 VLAAVLAAK-KGADLVIVQPHWGVEYAYEP------AAGQRALARRLIDAGADIIVGHHPHVLQPIEI 273 (372)
T ss_pred hHHHHHhhh-ccCCEEEEeccccccccCCC------cHHHHHHHHHHHhcCcCeEecCCCCcCcceEE
Confidence 444444443 56777899999732 32221 12234455555568999999999999887763
No 167
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=26.97 E-value=1.3e+02 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.0
Q ss_pred eceEEEEEeCCCCCCCEEEEEeCC
Q 011679 116 SGYIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 116 ~~~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
.+-.+...=.+|++|..|.|++..
T Consensus 25 ~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 25 TGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred CccEEEEECCCCCCCCEEEEEEEE
Confidence 345566666899999999999965
No 168
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.83 E-value=78 Score=24.96 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.2
Q ss_pred eceEEEEEeCCCCCCCEEEEEeCC
Q 011679 116 SGYIHQCLVDGLEYDTKYYYKIGS 139 (479)
Q Consensus 116 ~~~~~~v~l~gL~p~t~Y~Yrv~~ 139 (479)
.+-++++.+.++.+|..|.||+..
T Consensus 45 ~~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 45 ENGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCCEEEEEeCCccCCcEEEEEEEE
Confidence 345778899999999999999964
No 169
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=25.96 E-value=55 Score=30.92 Aligned_cols=13 Identities=15% Similarity=-0.023 Sum_probs=9.9
Q ss_pred CchhhhhHHHHHH
Q 011679 1 MEKMRLLLHLALT 13 (479)
Q Consensus 1 ~~~~r~~l~~~~~ 13 (479)
|.+||.||+.+++
T Consensus 2 ~~~RR~flk~~~~ 14 (244)
T PRK14993 2 DSSKRQFLQQLGV 14 (244)
T ss_pred CccHHHHHHHHHH
Confidence 3689999997654
No 170
>PRK10301 hypothetical protein; Provisional
Probab=23.73 E-value=4.3e+02 Score=21.96 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=13.0
Q ss_pred ceEEEEEeC-CCCCCCEE--EEEe
Q 011679 117 GYIHQCLVD-GLEYDTKY--YYKI 137 (479)
Q Consensus 117 ~~~~~v~l~-gL~p~t~Y--~Yrv 137 (479)
+....+.+. .|.||+ | .||+
T Consensus 85 ~~~~~v~l~~~L~~G~-YtV~Wrv 107 (124)
T PRK10301 85 QKQLIVPLADSLKPGT-YTVDWHV 107 (124)
T ss_pred CcEEEEECCCCCCCcc-EEEEEEE
Confidence 345677785 699984 4 5555
No 171
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.85 E-value=3.3e+02 Score=23.93 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhccCCCCCeEEEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecc
Q 011679 291 TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGH 354 (479)
Q Consensus 291 ~~Q~~WL~~~L~~~~~~~~~w~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH 354 (479)
.+..+-+.+.|++ .--...|+..|+|.+. +...+.+...+.+.+.|+++.|=
T Consensus 58 ~~~~~~~~~~l~~---~yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 58 EEVLEKAAANLRR---RYPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHH---HCCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEEC
Confidence 4455556666665 2122356666666551 22345677888899999999773
No 172
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=21.76 E-value=85 Score=28.95 Aligned_cols=14 Identities=21% Similarity=0.187 Sum_probs=11.7
Q ss_pred cCccEEEecccccc
Q 011679 345 YKVDVVFAGHVHAY 358 (479)
Q Consensus 345 ~~VdlvlsGH~H~y 358 (479)
.+.+++++||+|.-
T Consensus 178 ~~~~~vv~GHTh~~ 191 (218)
T PRK09968 178 NGADYFIFGHMMFD 191 (218)
T ss_pred CCCCEEEECCCCcC
Confidence 46789999999974
No 173
>PRK10799 metal-binding protein; Provisional
Probab=21.35 E-value=1.9e+02 Score=27.30 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=23.8
Q ss_pred EEEeccccccCCCCccCcCHHHHHHHHHHHHHcCccEEEecccccce
Q 011679 313 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 359 (479)
Q Consensus 313 Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~VdlvlsGH~H~y~ 359 (479)
+++.|||++-...... ...........+.++++ -+++-|++.-.
T Consensus 59 lIitHHP~~~~~~~~~--~~~~~~~~~~~li~~~i-~vy~~Htn~D~ 102 (247)
T PRK10799 59 AVIVHHGYFWKGESPV--IRGMKRNRLKTLLANDI-NLYGWHLPLDA 102 (247)
T ss_pred EEEECCchhccCCCcc--ccchHHHHHHHHHHCCC-eEEEEecchhh
Confidence 6678999863222111 11122334445556776 56788887643
No 174
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=20.88 E-value=70 Score=31.67 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHH
Q 011679 3 KMRLLLHLALTTA 15 (479)
Q Consensus 3 ~~r~~l~~~~~~~ 15 (479)
+||.||+.+++++
T Consensus 2 ~RR~fl~~~~~~~ 14 (328)
T PRK10882 2 NRRNFLKAASAGA 14 (328)
T ss_pred CHHHHHHHHHHHH
Confidence 5999999764433
Done!