BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011680
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/419 (58%), Positives = 318/419 (75%), Gaps = 4/419 (0%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTP-NELGSNRVQYGKLEKKYDS 102
D+P + VF +P G+NAPQQV ITQGDY+G+ VIISW TP ++ G+N+V Y K
Sbjct: 8 DMPWDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQK 67
Query: 103 SAEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPY 162
A GTV Y +Y Y S +IHHC + DLEYDTKYYY++G GD+ R+FWF TPPK PD PY
Sbjct: 68 RAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVPY 127
Query: 163 TFGIIGDLGQTYNSLSTLKHYMQSG--GQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIE 220
FG+IGD+GQT++S +TL HY Q+ GQ+VLF+GDLSY++R+ +D RWD+WGRF E
Sbjct: 128 VFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN-RWDTWGRFSE 186
Query: 221 QSAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHI 280
+S AYQPWIW+AGNHEI++ P++GE PF + +R TP+ AS S +PLWYAI+RASAHI
Sbjct: 187 RSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHI 246
Query: 281 IVLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVF 340
IVLSSYS +VKY+PQ+ W EL+KV+R +TPWLIVL+H PLY+S HYMEGE+MRA+F
Sbjct: 247 IVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIF 306
Query: 341 ESWFVHSRVDFIFAGHVHAYERSYRISNIHYNFTSGDRYPVPDKSAPVYLTVGDGGNQEG 400
E +FV+ +VD +F+GHVH+YERS R+SN+ YN + PV D+SAPVY+T+GDGGN EG
Sbjct: 307 EPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEG 366
Query: 401 LAGRFLDPQPNYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGNKVTTDSVVFHNQYWS 459
LA PQP+YSAFREAS+GH +IKNRTHA + W+RN DG V DS+ N+YW+
Sbjct: 367 LASEMTQPQPSYSAFREASFGHGIFDIKNRTHAHFSWHRNQDGASVEADSLWLLNRYWA 425
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/426 (57%), Positives = 313/426 (73%), Gaps = 3/426 (0%)
Query: 35 FIRTEWPSADIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYG 94
F+R + D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y
Sbjct: 1 FVRKTNKNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYW 60
Query: 95 KLEKKYDSSAEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPP 154
+ A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP
Sbjct: 61 SEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPP 120
Query: 155 KIHPDAPYTFGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRW 212
+ D PYTFG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RW
Sbjct: 121 QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRW 179
Query: 213 DSWGRFIEQSAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYA 272
D+WGRF E+S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+
Sbjct: 180 DTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 239
Query: 273 IRRASAHIIVLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYME 332
I+RASAHIIVLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+ME
Sbjct: 240 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFME 299
Query: 333 GESMRAVFESWFVHSRVDFIFAGHVHAYERSYRISNIHYNFTSGDRYPVPDKSAPVYLTV 392
GE+MR FE+WFV +VD +FAGHVHAYERS R+SNI Y T G PV D+SAPVY+T+
Sbjct: 300 GEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITI 359
Query: 393 GDGGNQEGLAGRFLDPQPNYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGNKVTTDSVV 452
GD GN + + PQP YSAFREAS+GH +IKNRTHA + WNRN DG V DSV
Sbjct: 360 GDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVW 419
Query: 453 FHNQYW 458
F N++W
Sbjct: 420 FFNRHW 425
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/417 (58%), Positives = 310/417 (74%), Gaps = 3/417 (0%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSS 103
D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y +
Sbjct: 4 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 63
Query: 104 AEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPYT 163
A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP+ D PYT
Sbjct: 64 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 123
Query: 164 FGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIEQ 221
FG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RWD+WGRF E+
Sbjct: 124 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 182
Query: 222 SAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHII 281
S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+I+RASAHII
Sbjct: 183 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 242
Query: 282 VLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVFE 341
VLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+MEGE+MR FE
Sbjct: 243 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 302
Query: 342 SWFVHSRVDFIFAGHVHAYERSYRISNIHYNFTSGDRYPVPDKSAPVYLTVGDGGNQEGL 401
+WFV +VD +FAGHVHAYERS R+SNI Y T+G PV D+SAPVY+T+GD GN +
Sbjct: 303 AWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVI 362
Query: 402 AGRFLDPQPNYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGNKVTTDSVVFHNQYW 458
+ PQP YSAFREAS+GH +IKNRTHA + WNRN DG V DSV F N++W
Sbjct: 363 DSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 419
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 502 bits (1292), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/417 (58%), Positives = 310/417 (74%), Gaps = 3/417 (0%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSS 103
D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y +
Sbjct: 2 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 61
Query: 104 AEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPYT 163
A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP+ D PYT
Sbjct: 62 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 121
Query: 164 FGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIEQ 221
FG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RWD+WGRF E+
Sbjct: 122 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 180
Query: 222 SAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHII 281
S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+I+RASAHII
Sbjct: 181 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 240
Query: 282 VLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVFE 341
VLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+MEGE+MR FE
Sbjct: 241 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 300
Query: 342 SWFVHSRVDFIFAGHVHAYERSYRISNIHYNFTSGDRYPVPDKSAPVYLTVGDGGNQEGL 401
+WFV +VD +FAGHVHAYERS R+SNI Y T+G PV D+SAPVY+T+GD GN +
Sbjct: 301 AWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVI 360
Query: 402 AGRFLDPQPNYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGNKVTTDSVVFHNQYW 458
+ PQP YSAFREAS+GH +IKNRTHA + WNRN DG V DSV F N++W
Sbjct: 361 DSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHW 417
>pdb|4EGD|A Chain A, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
pdb|4EGD|B Chain B, 1.85 Angstrom Crystal Structure Of Native Hypothetical
Protein Saouhsc_02783 From Staphylococcus Aureus
Length = 260
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 350 DFIFAGHVHAYERSYRISNIHYNFTS-GDRYPVPDKSAPVYLTVGDG 395
D + +V +Y Y+++N YN RY +P K AP L GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|4EG9|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of Se-Methionine
Hypothetical Protein Saouhsc_02783 From Staphylococcus
Aureus
Length = 260
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 350 DFIFAGHVHAYERSYRISNIHYNFTS-GDRYPVPDKSAPVYLTVGDG 395
D + +V +Y Y+++N YN RY +P K AP L GDG
Sbjct: 171 DISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDG 217
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 61 PQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSSAEGTVTNYTFYKYKSGY 120
P+ V + + K +I++W P+E Y Y + + ++
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIY---YSTDVNAEIHDWVIEPVVGNR 165
Query: 121 IHHCLVDDLEYDTKYYYKI------GDGDSSREFWFQTP 153
+ H + +L DT YY+KI G G S F+TP
Sbjct: 166 LTHQ-IQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
>pdb|2Z1P|A Chain A, The Enterococcus Faecalis Mscramm Ace Binds Its Ligands By
The Collagen Hug Model
Length = 348
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 34/133 (25%)
Query: 129 LEYDTKYYYKIGD--GDSSREFWF-------------------QTPPKIHPDAPYTFGII 167
+E D ++YK+GD G+S++ WF Q + +TF I+
Sbjct: 153 IERDYPFFYKVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIV 212
Query: 168 GDLGQTYNSLSTLKHYMQSGGQSVLFLGDLSYADRYEYNDVGIR-WDSWGRFIEQSAAYQ 226
D Y SL+ + Q G + F+ D ND +R + RF Y
Sbjct: 213 NDKETKYISLA---EFEQQGYGKIDFVTD---------NDFNLRFYRDKARFTSFIVRYT 260
Query: 227 PWIWSAGNHEIEF 239
I AG H+ F
Sbjct: 261 STITEAGQHQATF 273
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 61 PQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSSAEGTVTNYTFYKYKSGY 120
P+ V + + K +I++W P+E Y Y + + ++
Sbjct: 22 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIY---YSTDVNAEIHDWVIEPVVGNR 78
Query: 121 IHHCLVDDLEYDTKYYYKI------GDGDSSREFWFQTPPKIHPDA 160
+ H + +L DT YY+KI G G S F+TP P +
Sbjct: 79 LTH-QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPSS 123
>pdb|1OI8|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
pdb|1OI8|B Chain B, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
Length = 532
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 362 RSYRISNIHYNFTSGDRYPVPDKSAPVYLTVG 393
++YR++ +++N T GD YP D + P Y+ G
Sbjct: 464 KTYRMATLNFNATGGDGYPRLD-NKPGYVNTG 494
>pdb|2USH|A Chain A, 5'-Nucleotidase From E. Coli
pdb|2USH|B Chain B, 5'-Nucleotidase From E. Coli
pdb|1USH|A Chain A, 5'-Nucleotidase From E. Coli
Length = 550
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 362 RSYRISNIHYNFTSGDRYPVPDKSAPVYLTVG 393
++YR++ +++N T GD YP D + P Y+ G
Sbjct: 489 KTYRMATLNFNATGGDGYPRLD-NKPGYVNTG 519
>pdb|1HO5|A Chain A, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HO5|B Chain B, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HPU|A Chain A, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|B Chain B, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|C Chain C, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|D Chain D, 5'-Nucleotidase (Closed Form), Complex With Ampcp
Length = 525
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 362 RSYRISNIHYNFTSGDRYPVPDKSAPVYLTVG 393
++YR++ +++N T GD YP D + P Y+ G
Sbjct: 464 KTYRMATLNFNATGGDGYPRLD-NKPGYVNTG 494
>pdb|1HP1|A Chain A, 5'-Nucleotidase (Open Form) Complex With Atp
Length = 516
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 362 RSYRISNIHYNFTSGDRYPVPDKSAPVYLTVG 393
++YR++ +++N T GD YP D + P Y+ G
Sbjct: 455 KTYRMATLNFNATGGDGYPRLD-NKPGYVNTG 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,793,452
Number of Sequences: 62578
Number of extensions: 724808
Number of successful extensions: 1480
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 21
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)