BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011681
(479 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGQ0|VOZ1_ARATH Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1
Length = 486
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/496 (70%), Positives = 398/496 (80%), Gaps = 29/496 (5%)
Query: 1 MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLR 60
M GK +KTNC+SASHKLFKDKAK RVDDLQG LDLQFARKESR DV+LLEEQV+QMLR
Sbjct: 1 MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60
Query: 61 EWKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVA 119
EWK+EL+EPSPASSLQQ G+LG FSSDI RLLQLC+EEDDATS L APKPEP DQ L
Sbjct: 61 EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKPEPADQNLEAG 120
Query: 120 DTAVYH------EGEQQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHH-FDLHQEFE 172
AV+ +G+ +H PLVD CK+ S A NN +G+ L+YH +DL QEFE
Sbjct: 121 KAAVFQRGYNLVQGKSEHGLPLVDNCKDLSL----AAGNNFDGTAPLEYHQQYDLQQEFE 176
Query: 173 QNFYAGYN-VSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYC 231
NF G+N ++ + IS ++P ICPPPSAFLGPKCALWDCPRPAQG DW+QDYC
Sbjct: 177 PNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYC 236
Query: 232 SGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPW 291
S FHAALAF+EGPPGM PV+RPGGIGLKDGLLFAALSA+A GKDVGIPECEGAATAKSPW
Sbjct: 237 SSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 296
Query: 292 NAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGG 351
NAPELFDL+VLE ET+REWLFFDKPRRAFESGNRKQRSLPDY+GRGWHESRKQ+M EFGG
Sbjct: 297 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGG 356
Query: 352 LKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQK 411
LKRSYYMDPQPL+HFEWHLYEYEINKCDACALYRLELKLVDGKK++KGK++NDSVADLQK
Sbjct: 357 LKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQK 416
Query: 412 QMGRLTAEFPSD---------NKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGP 462
QMGRLTAEFP + NKR +KGR KV+ K G NV + + DYG
Sbjct: 417 QMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATG-------NVQNTVEQANDYGV 469
Query: 463 TGQFDYLIENLSEYYL 478
+F+YL+ NLS+YY+
Sbjct: 470 GEEFNYLVGNLSDYYI 485
>sp|Q9SLB9|VOZ2_ARATH Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2
Length = 450
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/427 (51%), Positives = 271/427 (63%), Gaps = 44/427 (10%)
Query: 25 RVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFS 84
++ +LQ +F LQ ARKE R D++LLE Q+ Q +REW+AEL PSP SSL +G F
Sbjct: 17 KLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPESSLLGEGISQFL 76
Query: 85 SDIYRLLQLCEEEDDATSTL-----TAPKPEPNDQVL-------------PV-------- 118
+ LL+L +EEDDATSTL P PE Q L P
Sbjct: 77 EEFAPLLKL-DEEDDATSTLKEHAGAKPDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGF 135
Query: 119 --ADTAVYHEGEQQH-SFPLVDQCKNSSSGVHSTAIN-NLEGSTLLDYHHFDLHQEFEQN 174
A + G+Q H + D NS+ H ++ NL+ ++ DY ++ QE +
Sbjct: 136 EDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDN- 194
Query: 175 FYAGYNVSNFCGEDAMQQISGYLPGICP-----PPSAFLGPKCALWDCPRPAQGVDWYQD 229
S D+ ++I + P PPSAFLGPKCALWDC RPAQG +WY D
Sbjct: 195 -------SPSTKLDSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLD 247
Query: 230 YCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKS 289
YCS +H LA +E PG PVLRPGGI LKD LL AL A+ QGK+VGIP CEGA K
Sbjct: 248 YCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKC 307
Query: 290 PWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEF 349
PWNA ELF L ++EGETIREWLFFDKPRRA++SGNRKQRSLPDYSGRGWHESRKQ+M E
Sbjct: 308 PWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQ 367
Query: 350 GGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADL 409
G KRSYYMDPQP FEWHL+EY+IN+ DACALYRLELK+ +GKKS KGK++ D +ADL
Sbjct: 368 EGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADL 427
Query: 410 QKQMGRL 416
QK+MG+
Sbjct: 428 QKKMGQF 434
>sp|O74362|ESF2_SCHPO Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=esf2 PE=1 SV=1
Length = 334
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 347 NEFGGLKRSYYMDP----QPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLA 402
N+ GG K S+Y D + L F+WH +I +A RL++++ G+K K +
Sbjct: 198 NQIGGKKSSWYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMR 257
Query: 403 NDSVADL-----QKQMGR----LTAEFPSDNKRL 427
N A + +K+ R ++ EFP + K L
Sbjct: 258 NVENAKMIEGIRKKRSERDTLNVSTEFPEETKDL 291
>sp|Q5F499|OPA1_CHICK Dynamin-like 120 kDa protein, mitochondrial OS=Gallus gallus
GN=OPA1 PE=2 SV=1
Length = 977
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 338 WHES-----RKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVD 392
WH+ K +N +R +Y +++ H + E+ D +R++ L
Sbjct: 854 WHQIYRRYFLKTALNHCNLCRRGFY-------YYQRHFVDSELECNDIVLFWRIQRMLAI 906
Query: 393 GKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVK 429
+ + +L N V L+K + + +F DN++ VK
Sbjct: 907 TANTLRQQLTNTEVRRLEKNVKEVLEDFAEDNEKKVK 943
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 48 VSLLEEQVHQMLRE-WKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTA 106
V L + VH++ R+ ++ E+ + S S L +G+ F +D RLL+ EE + T
Sbjct: 79 VDKLIDDVHRLFRDKYRTEIQQQSALSLL--NGTFDFQNDFLRLLREAEESSKIRAPTTM 136
Query: 107 PKPEPNDQVLPVADTAVYHEGEQ 129
K E +++ + + GE+
Sbjct: 137 KKFEDSEKAKKPVRSMIETRGEK 159
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 9/134 (6%)
Query: 35 DLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLC 94
DL F R S ++ +LE+ + R KA+ S + + Q + G + +
Sbjct: 678 DLMFTRDLSVKEELDMLEDSQYIHQRVQKAQFLVESESQNTVQRQTTGIEETWLKAQEFP 737
Query: 95 EEEDDATSTLTAPKPEPNDQVLPVADTAVYHEGEQQHSFPLVDQCKNSSSGVHSTA--IN 152
++ + P+P+P+ L T V Q S + DQ S HS +
Sbjct: 738 SQQKKKGTEFNKPQPQPSR--LLTKPTQVEAISSQMASITICDQSAESEPQEHSEVHDVT 795
Query: 153 NLEGSTLLDYHHFD 166
+L+GS HHF+
Sbjct: 796 SLQGS-----HHFN 804
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 48 VSLLEEQVHQMLRE-WKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTA 106
V L + VH++ R+ ++ E+ + S S L +G+ F +D RLL+ EE + T
Sbjct: 79 VDKLIDDVHRLFRDKYRTEIQQQSALSLL--NGTFDFQNDFLRLLREAEESSKIRAPTTM 136
Query: 107 PKPEPNDQVLPVADTAVYHEGEQ 129
K E +++ + + GE+
Sbjct: 137 KKFEDSEKAKKPVRSMIETRGEK 159
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 48 VSLLEEQVHQMLRE-WKAELHEPSPASSLQQDGSLGFSSDIYRLLQLCEEEDDATSTLTA 106
V L + VH++ R+ ++ E+ + S S L +G+ F +D RLL+ EE + T
Sbjct: 79 VDKLIDDVHRLFRDKYRTEIQQQSALSLL--NGTFDFQNDFLRLLREAEESSKIRAPTTM 136
Query: 107 PKPEPNDQVLPVADTAVYHEGEQ 129
K E +++ + + GE+
Sbjct: 137 KKFEDSEKAKKPVRSMIETRGEK 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,560,079
Number of Sequences: 539616
Number of extensions: 8939381
Number of successful extensions: 21040
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 21023
Number of HSP's gapped (non-prelim): 22
length of query: 479
length of database: 191,569,459
effective HSP length: 121
effective length of query: 358
effective length of database: 126,275,923
effective search space: 45206780434
effective search space used: 45206780434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)