Query 011681
Match_columns 479
No_of_seqs 30 out of 32
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 13:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 95.9 0.0022 7.4E-08 57.2 1.2 124 259-393 26-169 (171)
2 3ulx_A Stress-induced transcri 91.3 0.047 1.6E-06 49.0 0.7 121 259-390 24-169 (174)
3 1ich_A TNF-1, tumor necrosis f 82.2 0.61 2.1E-05 39.8 2.2 15 51-65 53-67 (112)
4 3ezq_A Tumor necrosis factor r 81.0 0.72 2.5E-05 39.5 2.2 14 51-64 48-61 (115)
5 3oq9_A Tumor necrosis factor r 78.9 0.47 1.6E-05 38.5 0.4 15 51-65 40-54 (86)
6 1wyl_A NEDD9 interacting prote 70.0 4.8 0.00017 33.2 4.3 52 224-308 13-64 (116)
7 1bkr_A Spectrin beta chain; fi 66.6 5.6 0.00019 32.5 4.0 51 224-307 9-59 (109)
8 1wyq_A Spectrin beta chain, br 61.2 8.1 0.00028 32.4 4.1 49 224-305 13-61 (127)
9 2d87_A Smoothelin splice isofo 58.4 8.8 0.0003 32.3 3.9 50 224-306 13-62 (128)
10 2d88_A Protein mical-3; all al 56.9 4.8 0.00016 33.5 2.0 52 224-308 15-66 (121)
11 1bhd_A Utrophin; calponin homo 54.4 7.4 0.00025 32.2 2.7 52 224-308 14-65 (118)
12 2d89_A EHBP1 protein; all alph 53.3 6.5 0.00022 32.5 2.2 52 224-308 15-66 (119)
13 1fad_A Protein (FADD protein); 52.6 7.1 0.00024 30.6 2.2 16 51-66 53-68 (99)
14 1wxp_A THO complex subunit 1; 50.0 8.4 0.00029 31.2 2.3 15 51-65 56-70 (110)
15 2of5_A Death domain-containing 49.6 8.1 0.00028 32.2 2.2 15 51-65 63-77 (114)
16 2o71_A Death domain-containing 49.0 8.3 0.00029 32.2 2.2 15 51-65 63-77 (115)
17 2of5_H Leucine-rich repeat and 46.7 10 0.00034 31.3 2.3 15 51-65 52-66 (118)
18 2yqf_A Ankyrin-1; death domain 44.9 11 0.00038 30.4 2.3 15 51-65 57-71 (111)
19 1c53_A Cytochrome C553; electr 43.5 26 0.0009 25.1 3.9 50 221-277 1-51 (79)
20 3ezq_B Protein FADD; apoptosis 41.2 13 0.00044 31.4 2.2 16 51-66 45-60 (122)
21 2ets_A Hypothetical protein; s 38.5 49 0.0017 28.9 5.4 52 14-65 9-64 (128)
22 1c75_A Cytochrome C-553; heme, 33.9 35 0.0012 23.9 3.2 42 222-267 2-43 (71)
23 3v1a_A Computational design, M 29.7 44 0.0015 25.2 3.2 29 35-63 16-44 (48)
24 1wku_A Alpha-actinin 3; calpon 29.5 52 0.0018 30.0 4.4 36 224-271 146-181 (254)
25 3zwl_E Eukaryotic translation 29.0 24 0.00083 26.6 1.7 22 42-64 5-26 (50)
26 2hfi_A Hypothetical protein YP 28.8 60 0.0021 28.2 4.4 50 16-65 4-57 (131)
27 2huj_A LIN2004 protein; hypoth 25.9 1.1E+02 0.0039 26.9 5.7 49 17-65 21-73 (140)
28 1xrd_A LH-1, light-harvesting 25.2 18 0.00063 27.8 0.5 12 308-320 3-14 (52)
29 3h0g_K DNA-directed RNA polyme 24.4 22 0.00077 30.4 0.9 15 292-306 2-16 (123)
30 2gf5_A FADD protein; death dom 23.8 29 0.00098 30.5 1.5 15 51-65 137-151 (191)
31 1cno_A Cytochrome C552; electr 22.8 78 0.0027 22.9 3.5 48 221-275 5-52 (87)
32 1wve_C 4-cresol dehydrogenase 22.5 71 0.0024 23.1 3.2 40 220-267 4-43 (80)
33 2d9e_A Peregrin; four-helix bu 21.0 71 0.0024 26.1 3.3 47 25-71 68-116 (121)
34 4djb_A E4-ORF3; adenovirus pro 20.9 48 0.0017 29.4 2.3 16 51-66 38-53 (130)
35 2zzs_A Cytochrome C554; C-type 20.8 61 0.0021 24.0 2.6 50 219-275 23-72 (103)
36 1khc_A DNA cytosine-5 methyltr 20.7 54 0.0019 28.4 2.6 34 31-65 90-127 (147)
37 1yzm_A FYVE-finger-containing 20.2 71 0.0024 24.3 2.8 26 35-60 17-42 (51)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=95.86 E-value=0.0022 Score=57.17 Aligned_cols=124 Identities=27% Similarity=0.509 Sum_probs=76.6
Q ss_pred CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681 259 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 334 (479)
Q Consensus 259 KDg~LFa-AL~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~ 334 (479)
.|-=|.. -|..|+.|...- |+++. .-...||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.-.
T Consensus 26 TDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t~--- 94 (171)
T 1ut7_A 26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVAG--- 94 (171)
T ss_dssp CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEET---
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccCC---
Confidence 4555665 488999998765 44443 4567899877753 2 244 799999988889999999999741
Q ss_pred CCchhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc---------ccceeeeeeeeeccC
Q 011681 335 GRGWHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC---------DACALYRLELKLVDG 393 (479)
Q Consensus 335 gRGWhESRK--qvMk--e~gGlkrS--YYMDPQP~~-~~eWHlyEYein~~---------dacALYRLElK~~d~ 393 (479)
+==||-.-+ .|.. ..-|.|++ ||..-.|.+ .-.|-|.||.|... +...|+|+-.|....
T Consensus 95 ~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred CCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 223775432 2221 23366764 687655544 57899999999754 578888887776543
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=91.33 E-value=0.047 Score=48.99 Aligned_cols=121 Identities=29% Similarity=0.552 Sum_probs=74.3
Q ss_pred CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011681 259 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 334 (479)
Q Consensus 259 KDg~LFa-AL~Ak~qgk~VG---iP~CeGaat~KsPWNApelFdl~~legetirewlFFDkPRRAfeSGnRkQRslpDY~ 334 (479)
.|-=|.. -|.-|+.|...- |+++. .....||+=|+.. . .|+ +||+||-.-.|.+..|.|..|.- .
T Consensus 24 TDeELV~~YL~~K~~g~~~~~~~I~evD--vy~~~Pw~Lp~~~---~-~g~--~ewYFFs~r~~ky~~g~R~nR~t---~ 92 (174)
T 3ulx_A 24 TDDELVEHYLCRKAAGQRLPVPIIAEVD--LYKFDPWDLPERA---L-FGA--REWYFFTPRDRKYPNGSRPNRAA---G 92 (174)
T ss_dssp CHHHHHHHTHHHHHHTCCCSSSCCEECC--GGGSCGGGSGGGC---S-SCS--SEEEEEEECCC-----CCSCEEE---T
T ss_pred CHHHHHHHHHHHHhcCCCCCcCeeeecc--cccCCchhhhhhh---c-cCC--ceEEEEeccccccCCCCCceeec---C
Confidence 4555554 578888887543 45543 3457899877753 2 354 69999987778899999998874 1
Q ss_pred CCchhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc--------------ccceeeeeeeee
Q 011681 335 GRGWHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC--------------DACALYRLELKL 390 (479)
Q Consensus 335 gRGWhESRK--qvMk--e~gGlkrS--YYMDPQP~~-~~eWHlyEYein~~--------------dacALYRLElK~ 390 (479)
+==||-.-+ .|.. ..-|.||+ ||..-.|.+ .-.|-|.||.|... |...|+|+=.|.
T Consensus 93 ~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 93 NGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp TEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred CceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 223665422 2321 23467774 787766643 46799999999764 456777776553
No 3
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=82.16 E-value=0.61 Score=39.78 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
++||++||||.|+--
T Consensus 53 l~Eq~yqmLr~W~~~ 67 (112)
T 1ich_A 53 LREAQYSMLATWRRR 67 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999999864
No 4
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=80.96 E-value=0.72 Score=39.47 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHh
Q 011681 51 LEEQVHQMLREWKA 64 (479)
Q Consensus 51 LEeQvhQmLREWkA 64 (479)
++||++||||.|+-
T Consensus 48 ~~Eq~~qlLr~W~~ 61 (115)
T 3ezq_A 48 TAEQKVQLLRNWHQ 61 (115)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 56999999999984
No 5
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=78.92 E-value=0.47 Score=38.50 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
++||++||||.|+--
T Consensus 40 ~~Eq~~qmL~~W~~~ 54 (86)
T 3oq9_A 40 TAEQKVQLLLCWYQS 54 (86)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 349999999999863
No 6
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=70.00 E-value=4.8 Score=33.18 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=36.9
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. .|+++|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 59 (116)
T 1wyl_A 13 LRWCQEQTAGY----------PGV-HV-SDLSSSWADGLALCALVYRL---------------------QPGLLEPSELQ 59 (116)
T ss_dssp HHHHHHHHHHS----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTSCCCSSGG
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCCCCHHHhc
Confidence 67999887654 443 33 33345899999999999886 57888877776
Q ss_pred chhhh
Q 011681 304 GETIR 308 (479)
Q Consensus 304 getir 308 (479)
.++.+
T Consensus 60 ~~~~~ 64 (116)
T 1wyl_A 60 GLGAL 64 (116)
T ss_dssp GCCHH
T ss_pred cCCHH
Confidence 55443
No 7
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=66.58 E-value=5.6 Score=32.47 Aligned_cols=51 Identities=25% Similarity=0.510 Sum_probs=36.3
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| ||. +| .--.-+.+||..|.||.-+. .|+++|.+-|.
T Consensus 9 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 55 (109)
T 1bkr_A 9 LLWCQMKTAGY----------PNV-NI-HNFTTSWRDGMAFNALIHKH---------------------RPDLIDFDKLK 55 (109)
T ss_dssp HHHHHHHTTTC----------TTC-CC-SSSSGGGTTSHHHHHHHHHH---------------------CGGGCCGGGCC
T ss_pred HHHHHHHHccC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCCCCHHHcC
Confidence 57998766433 443 23 44446889999999999886 58888888776
Q ss_pred chhh
Q 011681 304 GETI 307 (479)
Q Consensus 304 geti 307 (479)
.+..
T Consensus 56 ~~~~ 59 (109)
T 1bkr_A 56 KSNA 59 (109)
T ss_dssp TTCH
T ss_pred cCCH
Confidence 5543
No 8
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=61.16 E-value=8.1 Score=32.43 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=35.3
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| ||. +| .--.-+.+||..|.||.-+. .|+++|++-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~Af~aLih~~---------------------~P~lid~~~l~ 59 (127)
T 1wyq_A 13 LLWCQMKTAGY----------PNV-NV-HNFTTSWRDGLAFNAIVHKH---------------------RPDLLDFESLK 59 (127)
T ss_dssp HHHHHHHHHTS----------SSC-CC-SCSSTTSSSSHHHHHHHHHH---------------------CTTTCCTTTSC
T ss_pred HHHHHHHHhcC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 67999776543 443 23 44446899999999999886 58888887765
Q ss_pred ch
Q 011681 304 GE 305 (479)
Q Consensus 304 ge 305 (479)
.+
T Consensus 60 ~~ 61 (127)
T 1wyq_A 60 KC 61 (127)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 9
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=58.40 E-value=8.8 Score=32.33 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+++|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 59 (128)
T 2d87_A 13 LDWCRAKTRGY----------EHV-DI-QNFSSSWSDGMAFCALVHNF---------------------FPEAFDYGQLS 59 (128)
T ss_dssp HHHHHHHSSSC----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTTSCSTTSC
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCcCCHHHcC
Confidence 57999877654 232 23 33345899999999999886 57888887765
Q ss_pred chh
Q 011681 304 GET 306 (479)
Q Consensus 304 get 306 (479)
.+.
T Consensus 60 ~~~ 62 (128)
T 2d87_A 60 PQN 62 (128)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 10
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=56.91 E-value=4.8 Score=33.52 Aligned_cols=52 Identities=27% Similarity=0.573 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| +|.. | +--.-+.+||..|.||.-+. +|+++|..-|.
T Consensus 15 L~W~q~~~~~y----------~~v~-v-~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 61 (121)
T 2d88_A 15 LGWCQRQTDGY----------AGVN-V-TDLTMSWKSGLALCAIIHRY---------------------RPDLIDFDSLD 61 (121)
T ss_dssp HHHHHHHSTTS----------SSCC-C-CCSSHHHHTSHHHHHHHHHH---------------------CTTTSCTTTSC
T ss_pred HHHHHHHhccC----------CCCC-C-CCchhhccccHHHHHHHHHh---------------------CcCcCCHHHcC
Confidence 68999887644 3332 2 33334789999999999886 57888888776
Q ss_pred chhhh
Q 011681 304 GETIR 308 (479)
Q Consensus 304 getir 308 (479)
.++.+
T Consensus 62 ~~~~~ 66 (121)
T 2d88_A 62 EQNVE 66 (121)
T ss_dssp TTCHH
T ss_pred ccCHH
Confidence 65543
No 11
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=54.41 E-value=7.4 Score=32.23 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| +|. + ++--.-+.+||..|.||.-+. +|+++|.+-+.
T Consensus 14 L~W~q~~~~~y----------~~v-~-v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 60 (118)
T 1bhd_A 14 LSWVRQTTRPY----------SQV-N-VLNFTTSWTDGLAFNAVLHRH---------------------KPDLFSWDKVV 60 (118)
T ss_dssp HHHHHHHHTTS----------TTC-C-CCSSSGGGTTSHHHHHHHHHH---------------------CGGGSCHHHHH
T ss_pred HHHHHHHhccC----------CCC-C-CCCCcccccCcHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 57999877544 342 2 344456789999999999886 58888877766
Q ss_pred chhhh
Q 011681 304 GETIR 308 (479)
Q Consensus 304 getir 308 (479)
.++.+
T Consensus 61 ~~~~~ 65 (118)
T 1bhd_A 61 KMSPI 65 (118)
T ss_dssp HSCHH
T ss_pred cCCHH
Confidence 54443
No 12
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.28 E-value=6.5 Score=32.53 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=36.2
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 303 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VGiP~CeGaat~KsPWNApelFdl~~le 303 (479)
+.|||.-|..| +|. .|--.. -+.+||..|.||.-+. .|+++|..-+.
T Consensus 15 L~W~~~~~~~y----------~~v-~v~nFs-~sw~dG~af~aLi~~~---------------------~P~lid~~~l~ 61 (119)
T 2d89_A 15 LVWCKEVTKNY----------RGV-KITNFT-TSWRNGLSFCAILHHF---------------------RPDLIDYKSLN 61 (119)
T ss_dssp HHHHHHHTTTC----------SSC-CCCCSS-HHHHTTHHHHHHHHHH---------------------CTTTSCGGGCC
T ss_pred HHHHHHHhccC----------CCC-CCCCcc-ccccccHHHHHHHHHH---------------------CcCcCChhhhc
Confidence 67999876543 332 233333 3788999999999886 58888888776
Q ss_pred chhhh
Q 011681 304 GETIR 308 (479)
Q Consensus 304 getir 308 (479)
.+..+
T Consensus 62 ~~~~~ 66 (119)
T 2d89_A 62 PQDIK 66 (119)
T ss_dssp TTCSH
T ss_pred ccCHH
Confidence 65444
No 13
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=52.64 E-value=7.1 Score=30.61 Aligned_cols=16 Identities=38% Similarity=0.682 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011681 51 LEEQVHQMLREWKAEL 66 (479)
Q Consensus 51 LEeQvhQmLREWkAEL 66 (479)
+.||++|||+.|+..-
T Consensus 53 ~~eq~~~mL~~W~~~~ 68 (99)
T 1fad_A 53 LSERVRESLKVWKNAE 68 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6799999999998753
No 14
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=49.96 E-value=8.4 Score=31.23 Aligned_cols=15 Identities=20% Similarity=0.641 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 56 ~~eq~~~mL~~W~~r 70 (110)
T 1wxp_A 56 MKMRAKQLLVAWQDQ 70 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 459999999999865
No 15
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=49.63 E-value=8.1 Score=32.21 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (114)
T 2of5_A 63 VQSQVVEAFIRWRQR 77 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 16
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=49.04 E-value=8.3 Score=32.17 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (115)
T 2o71_A 63 VQSQVVEAFIRWRQR 77 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 17
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=46.69 E-value=10 Score=31.29 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 52 l~eq~~~mL~~W~~~ 66 (118)
T 2of5_H 52 LDEQIRHMLFSWAER 66 (118)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999876
No 18
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=44.88 E-value=11 Score=30.44 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 57 ~~eq~~~mL~~W~~~ 71 (111)
T 2yqf_A 57 LLEQSVALLNLWVIR 71 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999876
No 19
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=43.48 E-value=26 Score=25.09 Aligned_cols=50 Identities=34% Similarity=0.579 Sum_probs=32.0
Q ss_pred CCchhhhhhhhhhhhhhhhccCCCC-CCCccccCCCCCCCchhhHHHHHhhhcCCccC
Q 011681 221 AQGVDWYQDYCSGFHAALAFSEGPP-GMGPVLRPGGIGLKDGLLFAALSARAQGKDVG 277 (479)
Q Consensus 221 aqG~ew~qdYCSsfHa~LAlnEGpp-G~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~VG 277 (479)
++|-.-++. |.++|..=. +|.+ +..|-|+ +....-+...|.+-..|..-+
T Consensus 1 a~G~~ly~~-Ca~CHg~~g--~g~~~~~~P~L~----g~~~~~~~~~l~~~~~g~~~~ 51 (79)
T 1c53_A 1 ADGAALYKS-CVGCHGADG--SKQAMGVGHAVK----GQKADELFKKLKGYADGSYGG 51 (79)
T ss_pred CcHHHHHHH-HHhccCCCC--CCCCCCCCCcCC----CCCHHHHHHHHHHHHcCCCCC
Confidence 456677777 999997432 4544 5567665 245566777887666665443
No 20
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=41.20 E-value=13 Score=31.37 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011681 51 LEEQVHQMLREWKAEL 66 (479)
Q Consensus 51 LEeQvhQmLREWkAEL 66 (479)
+.||++|||+.|+..-
T Consensus 45 l~eq~~~mL~~W~~r~ 60 (122)
T 3ezq_B 45 LTERVRESLRIWKNTE 60 (122)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6799999999999653
No 21
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=38.49 E-value=49 Score=28.92 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=45.4
Q ss_pred chHHHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011681 14 SHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (479)
Q Consensus 14 sH~~fkdkak~rVddLQ~~F~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 65 (479)
-|+-+-|..+.-++++++|-..-|.+|.+++.-| |-=.=++|.+.|.||+..
T Consensus 9 ~~~~~~~~i~~L~~~~~~~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 64 (128)
T 2ets_A 9 HHHHMNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLH 64 (128)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 3677889999999999999999999998888865 566779999999999974
No 22
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=33.89 E-value=35 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=24.2
Q ss_pred CchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHH
Q 011681 222 QGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAAL 267 (479)
Q Consensus 222 qG~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL 267 (479)
+|-.-++.+|.++|..=. +|. ..|-|+--+....+.-|+..+
T Consensus 2 ~G~~l~~~~C~~CHg~~g--~g~--~gP~L~~~~~~~~~~~l~~~i 43 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDL--TGA--SAPAIDKAGANYSEEEILDII 43 (71)
T ss_dssp CHHHHHHHHTHHHHCTTS--SCS--SSCCCTTGGGTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCC--CCC--CCCCCccccccCCHHHHHHHH
Confidence 566667889999997621 332 336665333334444455544
No 23
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=29.69 E-value=44 Score=25.23 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.7
Q ss_pred hhHHHhhhccccchHHHHHHHHHHHHHHH
Q 011681 35 DLQFARKESRTVDVSLLEEQVHQMLREWK 63 (479)
Q Consensus 35 ~LQ~ARKEsRs~D~avLEeQvhQmLREWk 63 (479)
-|..||+.+|--+|+.|++-++++=+|..
T Consensus 16 ~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 16 FIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999987776666543
No 24
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=29.53 E-value=52 Score=29.96 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhh
Q 011681 224 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARA 271 (479)
Q Consensus 224 ~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~ 271 (479)
+.||+.-|. |-+|. +|--.. =+++||..|.||.-+.
T Consensus 146 L~W~~~~~~----------~y~~v-~v~nFs-~s~~DG~a~~aLi~~~ 181 (254)
T 1wku_A 146 LLWCQRKTA----------PYRNV-NVQNFH-TSWKDGLALCALIHRH 181 (254)
T ss_dssp HHHHHHHHT----------TCTTC-CCCSSS-GGGTTSHHHHHHHHHH
T ss_pred HHHHHHHcc----------CCCCC-cCCCCc-cchhhHHHHHHHHHHH
Confidence 679987663 33443 343333 3799999999999886
No 25
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=29.02 E-value=24 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=12.4
Q ss_pred hccccchHHHHHHHHHHHHHHHh
Q 011681 42 ESRTVDVSLLEEQVHQMLREWKA 64 (479)
Q Consensus 42 EsRs~D~avLEeQvhQmLREWkA 64 (479)
|.-+++.+|+|.+ ..||.||+|
T Consensus 5 e~dsA~~evIe~R-RrlLeEW~a 26 (50)
T 3zwl_E 5 EADTAMRDLILHQ-RELLKQWTE 26 (50)
T ss_dssp ------CCHHHHH-HHHHHHHHH
T ss_pred HHhHhhHHHHHHH-HHHHHHHHH
Confidence 4446777788776 578999876
No 26
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=28.80 E-value=60 Score=28.21 Aligned_cols=50 Identities=8% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011681 16 KLFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (479)
Q Consensus 16 ~~fkdkak~rVddLQ~~F~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 65 (479)
+.+++.-...++++.++-...|.+|++++..| |-=.=++|.+.|.+|+..
T Consensus 4 ~~L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~ 57 (131)
T 2hfi_A 4 QTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEG 57 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 34778888889999999999999999999876 566779999999999954
No 27
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=25.91 E-value=1.1e+02 Score=26.89 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=41.9
Q ss_pred HHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011681 17 LFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (479)
Q Consensus 17 ~fkdkak~rVddLQ~~F~~LQ~ARKEsRs~D----~avLEeQvhQmLREWkAE 65 (479)
.+++.-...++++.+|-...|.+|.|++.-| |-=.=++|.+.|.||+..
T Consensus 21 ~L~~lteqLi~~~~e~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 73 (140)
T 2huj_A 21 ELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMKPFVDEAKRCADDFLEL 73 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 4677788888999999999999999899876 566779999999999954
No 28
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=25.22 E-value=18 Score=27.77 Aligned_cols=12 Identities=58% Similarity=1.290 Sum_probs=9.1
Q ss_pred hhhhcccccchhh
Q 011681 308 REWLFFDKPRRAF 320 (479)
Q Consensus 308 rewlFFDkPRRAf 320 (479)
|=||.|| |||++
T Consensus 3 kIWl~fD-Prr~L 14 (52)
T 1xrd_A 3 RIWQLFD-PRQAL 14 (52)
T ss_dssp GGGGTSS-HHHHH
T ss_pred eEEEEEc-hhHHH
Confidence 5699998 77764
No 29
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.43 E-value=22 Score=30.44 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=13.7
Q ss_pred Ccccccccccccchh
Q 011681 292 NAPELFDLSVLEGET 306 (479)
Q Consensus 292 NApelFdl~~leget 306 (479)
|||+-|++-||+||-
T Consensus 2 nap~~~e~f~l~ge~ 16 (123)
T 3h0g_K 2 NQPERYELIELMGLP 16 (123)
T ss_dssp CCCCGGGTSSCSSCC
T ss_pred CCCCccceeEeCCCc
Confidence 999999999999874
No 30
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=23.85 E-value=29 Score=30.45 Aligned_cols=15 Identities=47% Similarity=0.807 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 011681 51 LEEQVHQMLREWKAE 65 (479)
Q Consensus 51 LEeQvhQmLREWkAE 65 (479)
+.||++|||+.|+..
T Consensus 137 ~~eq~~~mL~~W~~r 151 (191)
T 2gf5_A 137 LTERVRESLRIWKNT 151 (191)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999864
No 31
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=22.76 E-value=78 Score=22.88 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCc
Q 011681 221 AQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKD 275 (479)
Q Consensus 221 aqG~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~ 275 (479)
++|-.-++ +|.++|..-. +|..+..|-|. +.....+.+.|..-..|..
T Consensus 5 ~~G~~ly~-~C~~CHg~~g--~g~~~~~P~L~----~~~~~~~~~~l~~~~~g~~ 52 (87)
T 1cno_A 5 EAGKAKAA-VCAACHGQNG--ISQVPIYPNLA----GQKEQYLVAALKAYKAGQR 52 (87)
T ss_dssp HHHHHHGG-GTHHHHCTTS--CCSSTTSCCCT----TCCHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHH-HHHhhcCCCC--CCCCCCCCCCC----CCCHHHHHHHHHHHHcCCc
Confidence 45767778 9999997532 44444566664 2233445666666666653
No 32
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=22.52 E-value=71 Score=23.09 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=27.8
Q ss_pred CCCchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHH
Q 011681 220 PAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAAL 267 (479)
Q Consensus 220 PaqG~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL 267 (479)
.+.|-+-++.+|.++|..= .|+.|-|+ |-.+.+.-|+..+
T Consensus 4 ~~~G~~l~~~~C~~CHg~~------gg~~P~L~--~~~~~~~~l~~~i 43 (80)
T 1wve_C 4 WGSGKNLYDKVCGHCHKPE------VGVGPVLE--GRGLPEAYIKDIV 43 (80)
T ss_dssp SSSHHHHHHHTTHHHHSTT------TCSSCCCT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC------CCCCCCCC--CCCCCHHHHHHHH
Confidence 4678888889999999741 25677776 3334566677766
No 33
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.02 E-value=71 Score=26.14 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=34.8
Q ss_pred hhhhhHHhhhhhHHHhhhc--cccchHHHHHHHHHHHHHHHhhcCCCCC
Q 011681 25 RVDDLQGKFLDLQFARKES--RTVDVSLLEEQVHQMLREWKAELHEPSP 71 (479)
Q Consensus 25 rVddLQ~~F~~LQ~ARKEs--Rs~D~avLEeQvhQmLREWkAEL~~pSP 71 (479)
=++|++-||.|-..=-.++ -..++..|++...++|++++.++..+..
T Consensus 68 f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~~ 116 (121)
T 2d9e_A 68 FEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGS 116 (121)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3578888988865543332 2357889999999999999999876544
No 34
>4djb_A E4-ORF3; adenovirus protein, RRM-like fold, HPV E2 DBD-like protein, suppressor inactivation, nucleus, viral protein; 2.05A {Human adenovirus 5}
Probab=20.94 E-value=48 Score=29.36 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011681 51 LEEQVHQMLREWKAEL 66 (479)
Q Consensus 51 LEeQvhQmLREWkAEL 66 (479)
|.+++-+.+|+||+|=
T Consensus 38 L~~~~~~Ii~~Wk~EN 53 (130)
T 4djb_A 38 IRDLLRDILRRWRDEN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5678999999999983
No 35
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=20.76 E-value=61 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCCchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCc
Q 011681 219 RPAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKD 275 (479)
Q Consensus 219 RPaqG~ew~qdYCSsfHa~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~Ak~qgk~ 275 (479)
.+++|-+-++ +|.++|..-. +|..+..|-|. +.....+...|.+-..|..
T Consensus 23 ~~~~G~~l~~-~C~~CHg~~g--~g~~~~~p~L~----g~~~~~~~~~l~~~~~g~~ 72 (103)
T 2zzs_A 23 DAAAGQAKAA-VCAACHGADG--NATIPGYPNLK----GQNEQYIVSSIKAYKNKER 72 (103)
T ss_dssp CHHHHHHHTT-TTHHHHCTTS--CCCSTTCCCCT----TCCHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHH-HHHhhcCCCC--CCCCCCCCCCC----CCCHHHHHHHHHHHHcCCC
Confidence 4567877788 9999997632 44444566664 2345567777776666653
No 36
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=20.67 E-value=54 Score=28.36 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=24.7
Q ss_pred HhhhhhHHHhhhccc----cchHHHHHHHHHHHHHHHhh
Q 011681 31 GKFLDLQFARKESRT----VDVSLLEEQVHQMLREWKAE 65 (479)
Q Consensus 31 ~~F~~LQ~ARKEsRs----~D~avLEeQvhQmLREWkAE 65 (479)
.+..-+|.|.++.-. .+..-+|+|+.||| +|--.
T Consensus 90 Av~eA~e~A~~r~~~~~~~~~~~~~~~~~k~m~-~wa~~ 127 (147)
T 1khc_A 90 AMYHTLEKARVRAGKTFSSSPGESLEDQLKPML-EWAHG 127 (147)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCccccHHHHHHHHH-HHhhc
Confidence 444567788777643 46677899999999 89654
No 37
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=20.21 E-value=71 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=20.9
Q ss_pred hhHHHhhhccccchHHHHHHHHHHHH
Q 011681 35 DLQFARKESRTVDVSLLEEQVHQMLR 60 (479)
Q Consensus 35 ~LQ~ARKEsRs~D~avLEeQvhQmLR 60 (479)
-+..||+.+|--+|+.||+-+++.=+
T Consensus 17 ~I~qAk~~~r~DEV~~Le~NLrEL~~ 42 (51)
T 1yzm_A 17 FIRQAKAAGRMDEVRTLQENLRQLQD 42 (51)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 47889999999999999986554433
Done!