BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011682
(479 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
168) GN=yrkJ PE=3 SV=1
Length = 261
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 318 KGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLFLE-LGIPPQV 376
KG+ K KW AS L F G V G+LG GG FIL P+ L L IP +V
Sbjct: 131 KGQEHSEDKEVIFNKWLASSLAFII------GGVSGILGAGGAFILVPIMLSILNIPVRV 184
Query: 377 SSATALFAITFSSSM--SVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428
+ A++L AITF SS+ +V + + VP AL S+IA+ +G V +K+
Sbjct: 185 TVASSL-AITFLSSIGATVGKVITGQVLFVP-ALVLMITSLIASPIGASVGQKV 236
>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
Length = 267
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 344 CGITAGMVGGLLGLGGGFILGP----LFLELGIPPQVSSA--TALFAITFSSSMSVVEYY 397
G G++G L G+GGGF++ P +F GIP V A T+LF + +S +S+ +
Sbjct: 19 VGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHA 78
Query: 398 LLKRFP---------VPYALYFFALSIIAAFVGQHVLKKLIKIL 432
+K + +F+ ++ F+ +LKKL I
Sbjct: 79 KIKNINWKASITIGIISLVFSYFSGFLVVNFIDSAILKKLFGIF 122
>sp|P44054|Y806_HAEIN UPF0721 transmembrane protein HI_0806 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0806
PE=3 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 344 CGITAGMVGGLLGLGGGFILGP----LFLELGIPPQVSSATAL 382
CGI MV + G+GGG ++ P LF EL P QV SAT+L
Sbjct: 12 CGICTNMVSAIFGIGGGVLMVPILRTLFPEL--PIQVISATSL 52
>sp|P46490|Y198_HAEIN UPF0721 transmembrane protein HI_0198 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0198
PE=3 SV=2
Length = 255
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 84 IGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHP 143
+GF + ++ G GGG I +P L L+ G + +K GGA+SA +Y LR+R
Sbjct: 14 VGFVASFIDAIAG-GGGLITIPAL-LMTGMPPAMALGTNKLQAMGGALSASLYFLRKRAV 71
Query: 144 TL 145
L
Sbjct: 72 NL 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,772,944
Number of Sequences: 539616
Number of extensions: 6931694
Number of successful extensions: 26526
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 26493
Number of HSP's gapped (non-prelim): 49
length of query: 479
length of database: 191,569,459
effective HSP length: 121
effective length of query: 358
effective length of database: 126,275,923
effective search space: 45206780434
effective search space used: 45206780434
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)