Query 011682
Match_columns 479
No_of_seqs 323 out of 2157
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 1.1E-27 2.4E-32 237.8 27.2 233 77-442 11-244 (266)
2 COG0730 Predicted permeases [G 100.0 7.5E-27 1.6E-31 230.7 27.8 238 77-443 6-245 (258)
3 PF01925 TauE: Sulfite exporte 99.9 1.3E-25 2.8E-30 218.7 22.5 228 82-442 2-234 (240)
4 PRK10621 hypothetical protein; 99.3 2.7E-11 5.8E-16 120.6 15.5 105 337-442 11-115 (266)
5 COG0730 Predicted permeases [G 99.3 7.5E-11 1.6E-15 116.6 15.3 105 338-442 7-111 (258)
6 PF01925 TauE: Sulfite exporte 99.0 4.7E-09 1E-13 102.1 11.8 107 78-195 129-239 (240)
7 PF04018 DUF368: Domain of unk 92.5 12 0.00027 37.2 26.1 91 339-451 143-233 (257)
8 PF02673 BacA: Bacitracin resi 83.3 51 0.0011 32.8 21.8 87 354-440 159-251 (259)
9 COG2119 Predicted membrane pro 69.0 48 0.001 31.4 9.7 51 150-200 135-185 (190)
10 COG3180 AbrB Putative ammonia 58.0 1.1E+02 0.0024 31.9 10.9 96 337-454 10-105 (352)
11 PF04066 MrpF_PhaF: Multiple r 51.7 77 0.0017 23.6 6.5 53 374-426 2-54 (55)
12 COG1288 Predicted membrane pro 49.5 1.5E+02 0.0032 32.0 10.4 42 91-133 148-194 (481)
13 PF05145 AmoA: Putative ammoni 48.6 2.8E+02 0.0061 28.4 12.3 95 336-452 155-249 (318)
14 KOG2881 Predicted membrane pro 48.3 2.2E+02 0.0048 28.6 10.7 51 155-205 106-156 (294)
15 PF01169 UPF0016: Uncharacteri 48.3 43 0.00093 27.0 5.0 41 151-191 36-76 (78)
16 COG3619 Predicted membrane pro 45.5 2E+02 0.0043 28.2 10.0 36 149-184 168-203 (226)
17 PF11169 DUF2956: Protein of u 43.2 46 0.00099 28.3 4.5 17 261-280 84-100 (103)
18 PRK00281 undecaprenyl pyrophos 42.0 3.7E+02 0.008 26.9 23.1 78 355-432 164-246 (268)
19 COG1346 LrgB Putative effector 42.0 3.5E+02 0.0075 26.6 13.7 109 289-429 57-172 (230)
20 PF11833 DUF3353: Protein of u 38.9 3.5E+02 0.0076 25.7 12.7 27 151-177 139-165 (194)
21 PRK10263 DNA translocase FtsK; 37.9 4.3E+02 0.0094 32.5 12.9 19 341-359 65-83 (1355)
22 PRK11469 hypothetical protein; 37.5 3.6E+02 0.0078 25.4 21.6 42 159-201 48-89 (188)
23 TIGR00801 ncs2 uracil-xanthine 36.2 5.2E+02 0.011 27.3 12.5 41 359-400 20-62 (415)
24 PF09835 DUF2062: Uncharacteri 36.1 3.2E+02 0.0069 24.4 13.1 47 77-126 21-67 (154)
25 TIGR00659 conserved hypothetic 35.7 4.3E+02 0.0094 25.8 15.6 66 362-429 103-169 (226)
26 PF04172 LrgB: LrgB-like famil 34.7 4.3E+02 0.0094 25.6 15.5 63 364-429 95-159 (215)
27 PF09605 Trep_Strep: Hypotheti 33.4 1.7E+02 0.0036 27.6 7.3 32 403-434 154-185 (186)
28 PRK10711 hypothetical protein; 32.3 5E+02 0.011 25.5 14.8 64 364-429 106-170 (231)
29 PRK12600 putative monovalent c 31.8 2.6E+02 0.0057 23.4 7.4 54 373-426 30-83 (94)
30 TIGR01112 mtrD N5-methyltetrah 31.1 1.2E+02 0.0026 29.0 5.6 28 83-115 139-166 (223)
31 COG1968 BacA Undecaprenyl pyro 30.5 5.8E+02 0.012 25.7 23.9 65 118-182 43-114 (270)
32 TIGR03082 Gneg_AbrB_dup membra 30.2 4.2E+02 0.009 24.0 10.3 75 343-441 5-81 (156)
33 PRK04288 antiholin-like protei 29.5 5.6E+02 0.012 25.2 15.6 80 341-429 95-175 (232)
34 PF05232 BTP: Bacterial Transm 29.2 1.3E+02 0.0028 23.6 4.8 39 101-139 19-57 (67)
35 PF07172 GRP: Glycine rich pro 28.1 82 0.0018 26.5 3.8 6 13-18 7-12 (95)
36 PF04207 MtrD: Tetrahydrometha 28.0 99 0.0022 29.6 4.6 25 83-110 139-163 (223)
37 COG1288 Predicted membrane pro 28.0 98 0.0021 33.3 5.1 32 10-41 217-248 (481)
38 PF11044 TMEMspv1-c74-12: Plec 28.0 2.4E+02 0.0051 20.4 5.5 14 199-212 27-40 (49)
39 PRK06161 putative monovalent c 27.9 3.1E+02 0.0068 22.6 7.2 57 369-425 25-82 (89)
40 PRK09757 PTS system N-acetylga 27.5 6.4E+02 0.014 25.3 12.2 56 411-472 153-208 (267)
41 PRK00968 tetrahydromethanopter 27.4 93 0.002 30.1 4.4 24 83-109 143-166 (240)
42 PRK12599 putative monovalent c 26.9 3.7E+02 0.008 22.3 7.5 58 369-426 27-85 (91)
43 PF07698 7TM-7TMR_HD: 7TM rece 26.7 5.1E+02 0.011 23.9 16.0 58 363-432 71-128 (194)
44 PRK12604 putative monovalent c 26.5 3.6E+02 0.0078 22.1 7.4 53 373-425 28-80 (84)
45 PRK12612 putative monovalent c 26.2 3.7E+02 0.008 22.1 7.3 56 371-426 28-83 (87)
46 TIGR02840 spore_YtaF putative 25.9 5.9E+02 0.013 24.3 20.3 47 155-201 37-83 (206)
47 COG4956 Integral membrane prot 25.6 4.7E+02 0.01 27.0 9.1 24 448-473 117-140 (356)
48 PRK12657 putative monovalent c 24.1 4.1E+02 0.009 22.5 7.3 54 373-426 34-87 (100)
49 PF13515 FUSC_2: Fusaric acid 24.0 4.3E+02 0.0094 22.1 8.3 21 159-179 40-60 (128)
50 PF01169 UPF0016: Uncharacteri 23.8 2.2E+02 0.0048 22.9 5.4 33 408-440 41-73 (78)
51 TIGR00822 EII-Sor PTS system, 23.4 7.6E+02 0.016 24.7 12.1 56 411-472 152-207 (265)
52 COG2966 Uncharacterized conser 23.4 7.3E+02 0.016 24.5 11.4 18 452-469 212-229 (250)
53 PF07857 DUF1632: CEO family ( 23.3 7.5E+02 0.016 24.6 10.2 26 78-110 181-206 (254)
54 COG1784 Predicted membrane pro 22.9 9.2E+02 0.02 25.5 14.9 29 335-363 215-244 (395)
55 PRK01844 hypothetical protein; 22.9 2.1E+02 0.0046 22.9 4.9 26 410-435 10-35 (72)
56 KOG1277 Endosomal membrane pro 22.5 8.1E+02 0.017 26.8 10.5 36 396-431 351-386 (593)
57 TIGR00439 ftsX putative protei 22.4 7E+02 0.015 25.4 10.1 21 341-361 229-249 (309)
58 COG3416 Uncharacterized protei 21.8 68 0.0015 30.9 2.3 25 85-109 137-161 (233)
59 PRK08381 putative monovalent c 21.6 4.7E+02 0.01 21.6 7.4 53 373-425 31-83 (87)
60 TIGR02230 ATPase_gene1 F0F1-AT 21.2 2.6E+02 0.0056 23.8 5.5 25 154-178 48-72 (100)
61 PRK10720 uracil transporter; P 21.2 9.5E+02 0.021 25.6 11.2 31 360-399 30-60 (428)
62 PRK11588 hypothetical protein; 20.9 1.1E+03 0.025 25.8 13.5 19 111-129 185-203 (506)
63 PF09527 ATPase_gene1: Putativ 20.2 3.6E+02 0.0078 19.7 6.4 26 153-178 5-30 (55)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=237.85 Aligned_cols=233 Identities=19% Similarity=0.254 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011682 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLAL 156 (479)
Q Consensus 77 ~~~~~~~iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l 156 (479)
..++.+++|+++|+++++.| |||.+.+|+|.. +|+|+++|++||.+.++.++.++.+.|.|+++ +||+...
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~~ 81 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQK 81 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHH
Confidence 34556667888888999999 999999999985 79999999999999999999999999888888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCccccCCC
Q 011682 157 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDP 236 (479)
Q Consensus 157 ~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~~~~k~e~~~k~e~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
.+.+++++|+.+|+++..++|++.++.+++++++..+.+++.+ +++ .++ +
T Consensus 82 ~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~------~~~-~~~----------------------~- 131 (266)
T PRK10621 82 LNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM------PKL-GEE----------------------D- 131 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC------Ccc-ccc----------------------c-
Confidence 9999999999999999999999999999999888877665432 100 000 0
Q ss_pred CCCCCCCCCccccCccccchhhHhhhhhHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHhhhhhhhhHHHHHHHHHH
Q 011682 237 EYLSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVAL 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~p~~~~~~~~~~~~l 316 (479)
+ +++.
T Consensus 132 --~-------------~~~~------------------------------------------------------------ 136 (266)
T PRK10621 132 --R-------------QRRL------------------------------------------------------------ 136 (266)
T ss_pred --c-------------cccc------------------------------------------------------------
Confidence 0 0000
Q ss_pred HhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHhhhccchhhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHH
Q 011682 317 YKGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLFL-ELGIPPQVSSATALFAITFSSSMSVVE 395 (479)
Q Consensus 317 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~Plll-~~Gi~p~vA~aTs~~~~~fss~~s~v~ 395 (479)
++ .......|+++|+++|++|+|||++++|.++ .++.|++++++|+++..++++..+...
T Consensus 137 ----------------~~---~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~ 197 (266)
T PRK10621 137 ----------------YG---LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLL 197 (266)
T ss_pred ----------------cc---hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0012346899999999999999999998775 679999999999999999999999999
Q ss_pred HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 011682 396 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTL 442 (479)
Q Consensus 396 ~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ll 442 (479)
|...|.+||..++.+.+++++|+++|.++.+|++++.+|+.+..+++
T Consensus 198 ~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~ 244 (266)
T PRK10621 198 FILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSA 244 (266)
T ss_pred HHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=230.71 Aligned_cols=238 Identities=24% Similarity=0.386 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011682 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLAL 156 (479)
Q Consensus 77 ~~~~~~~iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l 156 (479)
..++.+++|+++|+++++.|+|||.+.+|.+.. +++|+++|.+++++....++..+.+.|+|+++ +||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHH
Confidence 455667788888888888899999999999998 56999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCccccCCC
Q 011682 157 LFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDP 236 (479)
Q Consensus 157 ~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~~~~k~e~~~k~e~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
.+.+++++|+.+|+++..++|++.++..++.++++.+.+++++. +. .++| +
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~------~~-~~~~-----------~----------- 128 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP------RL-AKAE-----------D----------- 128 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc------cc-cccc-----------c-----------
Confidence 99999999999999999999999999999999999988877551 10 0000 0
Q ss_pred CCCCCCCCCccccCccccchhhHhhhhhHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHhhhhhhhhHHHHHHHHHH
Q 011682 237 EYLSNDTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVAL 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~p~~~~~~~~~~~~l 316 (479)
+.+ + . .+|
T Consensus 129 ~~~--------------~-~-----~~~---------------------------------------------------- 136 (258)
T COG0730 129 RAA--------------R-L-----RPL---------------------------------------------------- 136 (258)
T ss_pred ccc--------------c-c-----Ccc----------------------------------------------------
Confidence 000 0 0 000
Q ss_pred HhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHhhhccchhhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHH
Q 011682 317 YKGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLFL-ELGIPPQVSSATALFAITFSSSMSVVE 395 (479)
Q Consensus 317 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~Plll-~~Gi~p~vA~aTs~~~~~fss~~s~v~ 395 (479)
.......+|+++|+++|++|+|||+..+|.+. ..+.|.+.+.+|+++.+++++..+...
T Consensus 137 --------------------~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~ 196 (258)
T COG0730 137 --------------------LFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAAL 196 (258)
T ss_pred --------------------hhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 00123567899999999999999999999996 678999999999999999999999999
Q ss_pred HHH-hCCcchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 011682 396 YYL-LKRFPVPYALYFFALSIIAAFVGQHVLKKLIKILGRASIIIFTLS 443 (479)
Q Consensus 396 ~~~-~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ll~ 443 (479)
|.. .|.+||.++..+.+++++|+++|+++.+|++++.+|+.+..+++.
T Consensus 197 ~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~ 245 (258)
T COG0730 197 YLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLA 245 (258)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999 799999998899999999999999999999999999988655433
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.94 E-value=1.3e-25 Score=218.71 Aligned_cols=228 Identities=26% Similarity=0.444 Sum_probs=191.4
Q ss_pred HHHHHHHHHhhhcCcccchhhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 011682 82 TIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLALLFQPL 161 (479)
Q Consensus 82 ~~iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l~l~~~ 161 (479)
+++++++|++.+..|+|||.+.+|++.. + +|+++|++++......++..+++.|+|+++ +||+...++.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 3566777777777799999999999998 4 899999999999999999999999888877 999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCccccCCCCCCCC
Q 011682 162 LVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWKKETITKREAAKQLELIVLGNGYQTEECKCDPEYLSN 241 (479)
Q Consensus 162 ~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~~~~k~e~~~k~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (479)
+++|+.+|+++...+|++.++.+++++++..+.+++.+ ++.+.++ + .+
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~------~~~~~~~----------------------~--~~-- 120 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK------KRRKTPK----------------------S--RS-- 120 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc------ccccccc----------------------c--cc--
Confidence 99999999999999999999999999999888776543 1100000 0 00
Q ss_pred CCCCccccCccccchhhHhhhhhHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHhhhhhhhhHHHHHHHHHHHhhhh
Q 011682 242 DTTPEETREPKKSKVSIIENIYWKEFGLLVAVWAIILALQIAKNYTTTCSVLYWVLNLLQIPVAGGVSAYEAVALYKGRR 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~cs~~yw~~~~~~~p~~~~~~~~~~~~l~~~~~ 321 (479)
.+.+
T Consensus 121 ---------~~~~------------------------------------------------------------------- 124 (240)
T PF01925_consen 121 ---------SPPK------------------------------------------------------------------- 124 (240)
T ss_pred ---------cccc-------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccCCCCccccchhhHHHHHHHHHH-HHHHHhhhccchhhhHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 322 KIASKGDEGTKWRASQLVFYCACGIT-AGMVGGLLGLGGGFILGPLFLE-LGIPPQVSSATALFAITFSSSMSVVEYYLL 399 (479)
Q Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~G~~-aG~isGllGiGGG~i~~Plll~-~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~ 399 (479)
. +....+|.+ +|+++|++|+|||.+..|++.+ .|.+|+++.||+++++++++..+...|+..
T Consensus 125 ----------~------~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~ 188 (240)
T PF01925_consen 125 ----------R------WLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLIL 188 (240)
T ss_pred ----------h------hhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 012234445 9999999999999999999975 799999999999999999999999999999
Q ss_pred CCcchHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 011682 400 KRFPVPYALY---FFALSIIAAFVGQHVLKKLIKILGRASIIIFTL 442 (479)
Q Consensus 400 g~i~~~~a~~---l~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ll 442 (479)
|.+||+...+ +.+++++|+++|+++.+|++++.+|+.+.++++
T Consensus 189 g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~ 234 (240)
T PF01925_consen 189 GDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLL 234 (240)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999997777 999999999999999999999999998876554
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=120.55 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 011682 337 QLVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSII 416 (479)
Q Consensus 337 ~~~~~~~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~i 416 (479)
........|+++|+++|+.| |||.+.+|+++.+|+||++|.+|+.+.++.++.++...|...+++||+....+.+++++
T Consensus 11 ~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~ 89 (266)
T PRK10621 11 LLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFV 89 (266)
T ss_pred HHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34556778999999999999 99999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHH
Q 011682 417 AAFVGQHVLKKLIKILGRASIIIFTL 442 (479)
Q Consensus 417 g~~iG~~l~~~i~~~~~r~~lii~ll 442 (479)
|+.+|..+..+++++.+|..+.++++
T Consensus 90 Ga~~G~~l~~~l~~~~l~~~~~~~ll 115 (266)
T PRK10621 90 GSMSGALLVQYVQADILRQILPILVI 115 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999987765543
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.28 E-value=7.5e-11 Score=116.64 Aligned_cols=105 Identities=30% Similarity=0.468 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHH
Q 011682 338 LVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIA 417 (479)
Q Consensus 338 ~~~~~~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig 417 (479)
.....+.|+++|+++|++|+|||++.+|.++.+++||+.|.+|+...+.+++..+...|+..|++||+.+..+..++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 35577889999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhHHHHHHHHH
Q 011682 418 AFVGQHVLKKLIKILGRASIIIFTL 442 (479)
Q Consensus 418 ~~iG~~l~~~i~~~~~r~~lii~ll 442 (479)
+++|..+..+++++.++..+.++++
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~ll 111 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLLL 111 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999987655443
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.96 E-value=4.7e-09 Score=102.13 Aligned_cols=107 Identities=26% Similarity=0.503 Sum_probs=92.9
Q ss_pred HHHHHH-HHHHHHHhhhcCcccchhhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011682 78 IVVGTI-IGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLRQRHPTLDIPVIDYDLAL 156 (479)
Q Consensus 78 ~~~~~~-iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~id~~l~l 156 (479)
..++.+ .|+++|++ |+|||.+.+|.+....++|++++.+|+....+.++.++...|...+. +||+...
T Consensus 129 ~~~g~~~~G~~~G~~----g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~-------~~~~~~~ 197 (240)
T PF01925_consen 129 FLLGGLFIGFLSGLF----GIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGD-------VDWPMLL 197 (240)
T ss_pred hhhhHHHhhHHHhhh----hccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccHHHHH
Confidence 334344 66666666 99999999999998789999999999999999999999888888777 8998776
Q ss_pred H---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011682 157 L---FQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTR 195 (479)
Q Consensus 157 ~---l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~ 195 (479)
. +.+++++|+.+|.++.+++|++.++.++..+++.++.+
T Consensus 198 ~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 198 LSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999999999999999999999887764
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=92.50 E-value=12 Score=37.20 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 011682 339 VFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAA 418 (479)
Q Consensus 339 ~~~~~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~ 418 (479)
+...++|++++.--=+=|+.|.++ |+.+|.=..+..|-+.+.. -|+.....+..|+.+|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 345566666665555667777433 4455654444444443332 47788899999999999
Q ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHH
Q 011682 419 FVGQHVLKKLIKILGRASIIIFTLSFIIFVSAL 451 (479)
Q Consensus 419 ~iG~~l~~~i~~~~~r~~lii~ll~~~i~~s~i 451 (479)
..-+++.+++-++..+..+..++ ..++-|..
T Consensus 203 ~~~skll~~ll~~~~~~t~~~i~--GlviGSl~ 233 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAFII--GLVIGSLR 233 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhH
Confidence 99999999999998887665432 34444443
No 8
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=83.33 E-value=51 Score=32.84 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=54.7
Q ss_pred hhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh-C-----CcchHHHHHHHHHHHHHHHHHHHHHHH
Q 011682 354 LLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLL-K-----RFPVPYALYFFALSIIAAFVGQHVLKK 427 (479)
Q Consensus 354 llGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~-g-----~i~~~~a~~l~~~~~ig~~iG~~l~~~ 427 (479)
+=|+.=.-......+..|++++.|.--|-++..+....+.+--... . ..++.....-++.+++.+++.-+...|
T Consensus 159 ~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~ 238 (259)
T PF02673_consen 159 IPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLR 238 (259)
T ss_pred CCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544455666778999999999999888887777666533332 1 124444444556666677777776666
Q ss_pred hHHHHhHHHHHHH
Q 011682 428 LIKILGRASIIIF 440 (479)
Q Consensus 428 i~~~~~r~~lii~ 440 (479)
+.++...+.+.+.
T Consensus 239 ~~~~~~~~~F~~Y 251 (259)
T PF02673_consen 239 FLKRRKLRPFAIY 251 (259)
T ss_pred HHhhCCceeehhH
Confidence 6665544444433
No 9
>COG2119 Predicted membrane protein [Function unknown]
Probab=68.97 E-value=48 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011682 150 IDYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKG 200 (479)
Q Consensus 150 id~~l~l~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g 200 (479)
+-.-..+-+.++++++...|-+++..+|++.++.+-++++++.+.++++.+
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566778899999999999999999999999999999998888777654
No 10
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=57.96 E-value=1.1e+02 Score=31.92 Aligned_cols=96 Identities=19% Similarity=0.327 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 011682 337 QLVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSII 416 (479)
Q Consensus 337 ~~~~~~~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~i 416 (479)
+......+++..|.+.-++++.-+.++++.++ +.++.-....+++++-.+..+.-.++
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~----------------------a~~v~~~~~~~l~~P~~l~~~~q~il 67 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLL----------------------AGIVAGLRGLTLPLPRGLFKAGQVIL 67 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------------HHHHHHhccccccCChHHHHHHHHHH
Confidence 34556777888899999999988888874332 11122234456778877888888899
Q ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 011682 417 AAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALSLG 454 (479)
Q Consensus 417 g~~iG~~l~~~i~~~~~r~~lii~ll~~~i~~s~i~l~ 454 (479)
|..+|+++.....+...+....++.+.+..+.+++.++
T Consensus 68 G~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g 105 (352)
T COG3180 68 GIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLG 105 (352)
T ss_pred HHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999988888888866666666666666666554
No 11
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=51.70 E-value=77 Score=23.65 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011682 374 PQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 426 (479)
Q Consensus 374 p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~ 426 (479)
|++..|.+.+.............+.....-.+.++.+...+++|+..-++..+
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56778888888888888888888877777788889999999988887776554
No 12
>COG1288 Predicted membrane protein [Function unknown]
Probab=49.52 E-value=1.5e+02 Score=31.98 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=28.0
Q ss_pred hhhcCcccc-----hhhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHH
Q 011682 91 CGSVGGVGG-----GGIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSA 133 (479)
Q Consensus 91 ~~~~~GiGG-----G~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~ 133 (479)
-++..|++= -.+.+|+++. +|+|+-+++++-.+..-.+..++
T Consensus 148 gGt~~Gm~EEaiaFypIliPv~ia-lGyDsi~~va~i~lgt~iG~~~S 194 (481)
T COG1288 148 GGTVFGMGEEAIAFYPILIPLMVA-LGYDSITGVAIIYIGTQIGFAAS 194 (481)
T ss_pred ccccccchHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHhccchhhh
Confidence 355556653 3467788887 79999999888776554444433
No 13
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=48.62 E-value=2.8e+02 Score=28.35 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 011682 336 SQLVFYCACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSI 415 (479)
Q Consensus 336 ~~~~~~~~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ 415 (479)
........++.+.|.++=.+++=.+.+++|++. +... ........++|..+....-.+
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~-------------------~a~~---~~~~~~~~~~P~~l~~~aqv~ 212 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLV-------------------SAIL---NLFGGPSFSLPPWLVNAAQVL 212 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH-------------------HHHH---HHHhCCCCCCCHHHHHHHHHH
Confidence 344556667777788888888888888888652 1111 111223455565566666677
Q ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011682 416 IAAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALS 452 (479)
Q Consensus 416 ig~~iG~~l~~~i~~~~~r~~lii~ll~~~i~~s~i~ 452 (479)
+|..+|.++.+...+...|.....++....++..+..
T Consensus 213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 249 (318)
T PF05145_consen 213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCAL 249 (318)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988777776666655555544444444433
No 14
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=48.30 E-value=2.2e+02 Score=28.58 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011682 155 ALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGVETWK 205 (479)
Q Consensus 155 ~l~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~~~~k 205 (479)
...+.+++++++.+|-.....+|...-..+-.+++++.++|++..|.++-.
T Consensus 106 ~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~ 156 (294)
T KOG2881|consen 106 MSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSP 156 (294)
T ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 344567788888898887788888888888888889999999998865543
No 15
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=48.25 E-value=43 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011682 151 DYDLALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLV 191 (479)
Q Consensus 151 d~~l~l~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~ 191 (479)
-.-...-+.....++..+|.++.+++|++.++.+-+++++.
T Consensus 36 ~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 36 FAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33455566778889999999999999999999988877664
No 16
>COG3619 Predicted membrane protein [Function unknown]
Probab=45.55 E-value=2e+02 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011682 149 VIDYDLALLFQPLLVLGISIGVAFNVIFADWMITVL 184 (479)
Q Consensus 149 ~id~~l~l~l~~~~~~Ga~iGa~l~~~lp~~~l~~l 184 (479)
..||..-..+.++-+.|+++|+.+...+.++.+...
T Consensus 168 ~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~ 203 (226)
T COG3619 168 LRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVV 203 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 478888888899999999999999988887765443
No 17
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.21 E-value=46 Score=28.34 Aligned_cols=17 Identities=41% Similarity=0.808 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 011682 261 NIYWKEFGLLVAVWAIILAL 280 (479)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~ 280 (479)
.+|| ++|.+.|+.|.+-
T Consensus 84 ~LPW---~LL~lSW~gF~~Y 100 (103)
T PF11169_consen 84 WLPW---GLLVLSWIGFIAY 100 (103)
T ss_pred chhH---HHHHHHHHHHHHH
Confidence 3556 4788899988753
No 18
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=42.04 E-value=3.7e+02 Score=26.92 Aligned_cols=78 Identities=17% Similarity=0.076 Sum_probs=43.7
Q ss_pred hccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-h-CC---cchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 355 LGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYL-L-KR---FPVPYALYFFALSIIAAFVGQHVLKKLI 429 (479)
Q Consensus 355 lGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~-~-g~---i~~~~a~~l~~~~~ig~~iG~~l~~~i~ 429 (479)
=|+.=--......+.+|++.+.|.=-|-++..+.-..+.+--.. . +. .++...+.-++.+++.+++.-+...|+.
T Consensus 164 PGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~ 243 (268)
T PRK00281 164 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYI 243 (268)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555667899999999999888887776665553221 1 11 2332223334445555555555444444
Q ss_pred HHH
Q 011682 430 KIL 432 (479)
Q Consensus 430 ~~~ 432 (479)
++.
T Consensus 244 ~~~ 246 (268)
T PRK00281 244 KRH 246 (268)
T ss_pred HhC
Confidence 443
No 19
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=41.97 E-value=3.5e+02 Score=26.57 Aligned_cols=109 Identities=27% Similarity=0.393 Sum_probs=62.1
Q ss_pred ccchHHHHHHhhhhhhhhHHHHHHHHHHHhhhhccccCCCCccccchhhHHHHHHHHHHHHHHHhhhccchhhhHHHHH-
Q 011682 289 TCSVLYWVLNLLQIPVAGGVSAYEAVALYKGRRKIASKGDEGTKWRASQLVFYCACGITAGMVGGLLGLGGGFILGPLF- 367 (479)
Q Consensus 289 ~cs~~yw~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~Pll- 367 (479)
+-...-|+.++++- .+.-.|+-+||+++.+ +.+|. -...|.++|-+ .++.. .-++
T Consensus 57 Y~~g~~~i~~lLgP-----AtVAlAvPLYkq~~~i------k~~w~------~I~~g~~vGs~---~ai~s----~~lla 112 (230)
T COG1346 57 YMKGGQWINFLLGP-----ATVALAVPLYKQRHLI------KRHWK------PILAGVLVGSV---VAIIS----GVLLA 112 (230)
T ss_pred HhcccHHHHHHHHH-----HHHHHhhHHHHHHHHH------HHHHH------HHHHHHHHHHH---HHHHH----HHHHH
Confidence 33455677666652 2334456667666544 12342 22333333333 33222 2333
Q ss_pred HhcCCChHHHHH------HHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 368 LELGIPPQVSSA------TALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 429 (479)
Q Consensus 368 l~~Gi~p~vA~a------Ts~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~ 429 (479)
..+|.+++...+ |+-+.|-.+. ..|.+|--.+......+++|+.+|..+.+++.
T Consensus 113 k~~g~~~~~~~Sl~PkSvTTpiAm~vs~--------~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 113 KLFGLSPELILSLLPKSVTTPIAMEVSE--------SIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHhCCCHHHHHHhcccccccHHHHHHHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478888887643 3333333222 34667777788888889999999999988884
No 20
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=38.95 E-value=3.5e+02 Score=25.75 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 151 DYDLALLFQPLLVLGISIGVAFNVIFA 177 (479)
Q Consensus 151 d~~l~l~l~~~~~~Ga~iGa~l~~~lp 177 (479)
-++-.++-..+.++|..+|+.+...++
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666677788888888877764
No 21
>PRK10263 DNA translocase FtsK; Provisional
Probab=37.91 E-value=4.3e+02 Score=32.55 Aligned_cols=19 Identities=11% Similarity=-0.097 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhccch
Q 011682 341 YCACGITAGMVGGLLGLGG 359 (479)
Q Consensus 341 ~~~~G~~aG~isGllGiGG 359 (479)
..+-..++.++-+++|++.
T Consensus 65 GiVGA~LAD~L~~LFGl~A 83 (1355)
T PRK10263 65 GMPGAWLADTLFFIFGVMA 83 (1355)
T ss_pred chHHHHHHHHHHHHHhHHH
Confidence 3444566777778888644
No 22
>PRK11469 hypothetical protein; Provisional
Probab=37.53 E-value=3.6e+02 Score=25.44 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011682 159 QPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (479)
Q Consensus 159 ~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~ 201 (479)
..+.++|..+|..+..++|+.. .++-..++++++.+++++++
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888754 77777888899999987753
No 23
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=36.16 E-value=5.2e+02 Score=27.35 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.5
Q ss_pred hhhhHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011682 359 GGFILGPLFL--ELGIPPQVSSATALFAITFSSSMSVVEYYLLK 400 (479)
Q Consensus 359 GG~i~~Plll--~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g 400 (479)
++.+.+|+++ .. +++++...--....+.+...+.++-+..+
T Consensus 20 ~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~ 62 (415)
T TIGR00801 20 GGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTG 62 (415)
T ss_pred HHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4667788886 35 77777655555555555566666654433
No 24
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=36.06 E-value=3.2e+02 Score=24.44 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhhHHHHHHHhhCCCchhhhHHHHHHH
Q 011682 77 RIVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDAKSSAAVSKCMV 126 (479)
Q Consensus 77 ~~~~~~~iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~~~Av~ts~~~i 126 (479)
.+..++.+|++.|++=. +|...+..-++..++..+...|...+.+..
T Consensus 21 ~iA~g~AiG~fig~~P~---~g~~~~l~~~la~~~r~N~~aa~~~~~i~n 67 (154)
T PF09835_consen 21 SIALGFAIGVFIGFLPI---FGLQTVLAIALALLFRLNKPAAILGTWISN 67 (154)
T ss_pred HHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 45566777777775521 256677777777777887777776665543
No 25
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=35.68 E-value=4.3e+02 Score=25.85 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=38.7
Q ss_pred hHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 362 ILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 429 (479)
Q Consensus 362 i~~Pll-l~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~ 429 (479)
+..+++ ..+|.+++...+. .---.|+-.+.-.--..|..+--.+....+.+++|+.+|..+.+.+.
T Consensus 103 ~s~~~la~~lg~~~~i~~Sl--~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~~ 169 (226)
T TIGR00659 103 ISGTLLALLLGLGPEIIASL--LPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYFR 169 (226)
T ss_pred HHHHHHHHHHCcCHHHHHHh--hhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666 4789988777632 22222222222222233444555566777778899999999888774
No 26
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=34.71 E-value=4.3e+02 Score=25.58 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=37.3
Q ss_pred HHHH-HhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 364 GPLF-LELGIPPQVSSATALFAITFSS-SMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 429 (479)
Q Consensus 364 ~Pll-l~~Gi~p~vA~aTs~~~~~fss-~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~ 429 (479)
.+++ ..+|++++.+.+...=. .|+ .+--+.. ..|..+--.+....+.+++|+.+|..+.+++.
T Consensus 95 ~~~l~~~lgl~~~~~~Sl~pkS--VTtpiAi~is~-~iGG~~sLta~~VvitGi~Ga~~g~~llk~~~ 159 (215)
T PF04172_consen 95 AVLLARLLGLSPEIILSLAPKS--VTTPIAIEISE-QIGGIPSLTAVFVVITGILGAVLGPPLLKLLR 159 (215)
T ss_pred HHHHHHHHCcCHHHHHHHHHHH--hhHHHHHHHHH-HhCChHHHHHHHHHHHhhHHHHhHHHHHhHcc
Confidence 4555 47899887765533211 111 1111222 23444445566677778899999999888863
No 27
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=33.40 E-value=1.7e+02 Score=27.58 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 011682 403 PVPYALYFFALSIIAAFVGQHVLKKLIKILGR 434 (479)
Q Consensus 403 ~~~~a~~l~~~~~ig~~iG~~l~~~i~~~~~r 434 (479)
+.+......+..++++.+|..+.+|+-+|.++
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555666777788888888888888777654
No 28
>PRK10711 hypothetical protein; Provisional
Probab=32.29 E-value=5e+02 Score=25.52 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011682 364 GPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLI 429 (479)
Q Consensus 364 ~Pll-l~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~ 429 (479)
..++ ..+|.+++...+...=. .|+-.+.-.--..|..+--.+....+.+++|+.+|..+.+.+.
T Consensus 106 ~~~l~~~lg~~~~~~~Sl~pkS--VTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 106 GTAVALWMGATPEIAASILPKS--VTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred HHHHHHHHCcCHHHHHHHhhhh--hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444 47888887765432211 1111111111123445555667777888999999999887774
No 29
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=31.84 E-value=2.6e+02 Score=23.38 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011682 373 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 426 (479)
Q Consensus 373 ~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~ 426 (479)
.|++..|.+.+.....+.......+.....-.+.++.+...+++|+..-++...
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 83 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIE 83 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999888888888888877777788889999999888877665543
No 30
>TIGR01112 mtrD N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D. coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=31.06 E-value=1.2e+02 Score=28.99 Aligned_cols=28 Identities=29% Similarity=0.797 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhcCcccchhhHHHHHHHhhCCCc
Q 011682 83 IIGFFGTACGSVGGVGGGGIFVPMLNLIVGFDA 115 (479)
Q Consensus 83 ~iG~l~g~~~~~~GiGGG~i~vP~L~~~~g~~~ 115 (479)
+-|.++|+++ |+||+.++..++.. ++++
T Consensus 139 VsG~IGg~lG---GiGG~L~Y~al~~~--~~~~ 166 (223)
T TIGR01112 139 VSGIIGGALG---GIGGALVYYALIEV--GLSP 166 (223)
T ss_pred ehhhhhhhhc---ccchhHHHHHHHhc--ccCc
Confidence 3555666554 89999999999985 4543
No 31
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=30.52 E-value=5.8e+02 Score=25.71 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011682 118 SAAVSKCMVTGGAVSAVVYNLRQRHP-------TLDIPVIDYDLALLFQPLLVLGISIGVAFNVIFADWMIT 182 (479)
Q Consensus 118 Av~ts~~~i~~~s~~~~~~~~~~~~p-------~~~~p~id~~l~l~l~~~~~~Ga~iGa~l~~~lp~~~l~ 182 (479)
+..-.....+++-++-.++|+++=.+ ..|+..=+|++.+...++.++-+++|..+...+...+..
T Consensus 43 ~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~ 114 (270)
T COG1968 43 GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLFN 114 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHccC
Confidence 44444455556656655555432110 011111127788899999999999999888877665544
No 32
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=30.17 E-value=4.2e+02 Score=23.97 Aligned_cols=75 Identities=24% Similarity=0.440 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--CcchHHHHHHHHHHHHHHHH
Q 011682 343 ACGITAGMVGGLLGLGGGFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLK--RFPVPYALYFFALSIIAAFV 420 (479)
Q Consensus 343 ~~G~~aG~isGllGiGGG~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g--~i~~~~a~~l~~~~~ig~~i 420 (479)
.++.+.|.+.-.+++=.+.+++|+... .. ....| ..+++-......=.++|..+
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~-------------------~~-----~~~~~~~~~~~P~~~~~~~qviiG~~i 60 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAG-------------------AV-----LSLAGGLEITLPPWLLALAQVVIGILI 60 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHH-------------------HH-----HHhcCCccCCCCHHHHHHHHHHHHHHH
Confidence 455666777777777777777776421 11 11222 34555555555666778888
Q ss_pred HHHHHHHhHHHHhHHHHHHHH
Q 011682 421 GQHVLKKLIKILGRASIIIFT 441 (479)
Q Consensus 421 G~~l~~~i~~~~~r~~lii~l 441 (479)
|.++.+...+...|.....+.
T Consensus 61 G~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 61 GSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HccCCHHHHHHHHHHHHHHHH
Confidence 888777766666665444333
No 33
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=29.45 E-value=5.6e+02 Score=25.21 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Q 011682 341 YCACGITAGMVGGLLGLGGGFILGPLF-LELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAF 419 (479)
Q Consensus 341 ~~~~G~~aG~isGllGiGGG~i~~Pll-l~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~ 419 (479)
..+.|.++|.+.+++. ...+ ..+|.+++...+..-= -.|+-.+.-.--..|..+--.+....+.+++|+.
T Consensus 95 ~Il~~~~vG~~~~i~s-------~~~la~~lgl~~~~~~Sl~pK--SVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai 165 (232)
T PRK04288 95 QILGGIVVGSVCSVLI-------IYLVAKLIQLDNAVMASMLPQ--AATTAIALPVSAGIGGIKEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHCcCHHHHHHHhhH--hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3444555555544433 3444 4788888766443211 1111111111123355555567777788899999
Q ss_pred HHHHHHHHhH
Q 011682 420 VGQHVLKKLI 429 (479)
Q Consensus 420 iG~~l~~~i~ 429 (479)
+|..+.+.+.
T Consensus 166 ~g~~llk~~~ 175 (232)
T PRK04288 166 LGAKFLKLFR 175 (232)
T ss_pred HHHHHHHHcC
Confidence 9998887764
No 34
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=29.17 E-value=1.3e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 011682 101 GIFVPMLNLIVGFDAKSSAAVSKCMVTGGAVSAVVYNLR 139 (479)
Q Consensus 101 ~i~vP~L~~~~g~~~~~Av~ts~~~i~~~s~~~~~~~~~ 139 (479)
.+.+|++..++|.+..++-+.+........+-+..+|+-
T Consensus 19 ~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~ 57 (67)
T PF05232_consen 19 LISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWL 57 (67)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999988887777777777666653
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.13 E-value=82 Score=26.48 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.3
Q ss_pred HHHHHH
Q 011682 13 LLAAAF 18 (479)
Q Consensus 13 ~l~~~~ 18 (479)
+|+.++
T Consensus 7 llL~l~ 12 (95)
T PF07172_consen 7 LLLGLL 12 (95)
T ss_pred HHHHHH
Confidence 333343
No 36
>PF04207 MtrD: Tetrahydromethanopterin S-methyltransferase, subunit D ; InterPro: IPR005779 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=28.03 E-value=99 Score=29.61 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhcCcccchhhHHHHHHHh
Q 011682 83 IIGFFGTACGSVGGVGGGGIFVPMLNLI 110 (479)
Q Consensus 83 ~iG~l~g~~~~~~GiGGG~i~vP~L~~~ 110 (479)
+-|.++|+++ |+||+.++..++...
T Consensus 139 vsG~IGg~lG---G~GG~LiY~aL~~~~ 163 (223)
T PF04207_consen 139 VSGVIGGALG---GIGGALIYYALYNVG 163 (223)
T ss_pred ehhhhhhhhc---ccchHHHHHHHHHhh
Confidence 3555665554 899999999998863
No 37
>COG1288 Predicted membrane protein [Function unknown]
Probab=28.01 E-value=98 Score=33.31 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCccccc
Q 011682 10 RWRLLAAAFIGLLVVASVSVSAQSNLKPEATS 41 (479)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (479)
-||..+...+.++...|+-..+.+..|+....
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S 248 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWYASKVKKDPTLS 248 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 47888888777888888888888877654443
No 38
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.97 E-value=2.4e+02 Score=20.43 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhHH
Q 011682 199 KGVETWKKETITKR 212 (479)
Q Consensus 199 ~g~~~~k~e~~~k~ 212 (479)
+.++.-+..++.||
T Consensus 27 QkikqIrgKkk~KK 40 (49)
T PF11044_consen 27 QKIKQIRGKKKEKK 40 (49)
T ss_pred HHHHHHHhhhhhHH
Confidence 33443333333333
No 39
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=27.94 E-value=3.1e+02 Score=22.65 Aligned_cols=57 Identities=16% Similarity=0.002 Sum_probs=43.9
Q ss_pred hcC-CChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011682 369 ELG-IPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 425 (479)
Q Consensus 369 ~~G-i~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~ 425 (479)
..| -.|+++.|...+.....+.......+.....-.+.++.+...+++|+..-++..
T Consensus 25 v~GPt~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~ 82 (89)
T PRK06161 25 LRGPRAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFL 82 (89)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 578999999999888888888887777666677888888888887776655544
No 40
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=27.48 E-value=6.4e+02 Score=25.27 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCCC
Q 011682 411 FALSIIAAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALSLGGVGLAKMIKRIEHKEYMG 472 (479)
Q Consensus 411 ~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ll~~~i~~s~i~l~~~g~~~~i~~~~~~~~~~ 472 (479)
.+..+++.+.|+..++.+.+..=.+..- -+-+++=.|+.+|.....+.+-+++++.
T Consensus 153 ~~~~fl~~~fG~~~v~~~~~~iP~~v~~------GL~vaggmLPAvGfAmLl~~m~~k~~~~ 208 (267)
T PRK09757 153 AVIAFLCTYLAQGAMQALVKAMPAWLTH------GFEVAGGILPAVGFGLLLRVMFKAQYIP 208 (267)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHH------HHHHHhchHHHHHHHHHHHHHhhcchHH
Confidence 3444666777776665555443322221 1222333455555555555555555443
No 41
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=27.45 E-value=93 Score=30.11 Aligned_cols=24 Identities=42% Similarity=0.905 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhcCcccchhhHHHHHHH
Q 011682 83 IIGFFGTACGSVGGVGGGGIFVPMLNL 109 (479)
Q Consensus 83 ~iG~l~g~~~~~~GiGGG~i~vP~L~~ 109 (479)
+-|.++|.++ |+||+.++..++..
T Consensus 143 vsGvIGg~lG---GiGG~LiY~al~~~ 166 (240)
T PRK00968 143 VSGVIGGALG---GIGGALIYIALLEL 166 (240)
T ss_pred ehhhhhhhhc---ccchHHHHHHHHHh
Confidence 3455555554 89999999998886
No 42
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.88 E-value=3.7e+02 Score=22.32 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=46.2
Q ss_pred hcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011682 369 ELGI-PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 426 (479)
Q Consensus 369 ~~Gi-~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~ 426 (479)
..|= .+++..|.+.+.............+.....-.+.++.+...+++|+..-++...
T Consensus 27 i~GPt~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~ 85 (91)
T PRK12599 27 ILGPTLPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLV 85 (91)
T ss_pred hcCccHhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 689999999999999888888888877777788899999999888877655443
No 43
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=26.70 E-value=5.1e+02 Score=23.88 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=35.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011682 363 LGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKIL 432 (479)
Q Consensus 363 ~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~~~~ 432 (479)
..|+++..=++++.|..++.+..++.+... ..|.+...+ .++++.+|...++|..+|.
T Consensus 71 ~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~~----~l~~~~~~~~~~~~~~~R~ 128 (194)
T PF07698_consen 71 AAAMLLTILIDPRLAILASLFLSLLASLLF--------GFDFEFFLY----SLVSGIVAIFSVRRIRSRS 128 (194)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHh--------cccHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344455566778888888777776666553 334444444 4555666666677776554
No 44
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.54 E-value=3.6e+02 Score=22.09 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011682 373 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 425 (479)
Q Consensus 373 ~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~ 425 (479)
.|++..|.+.......+.......+.....-.+.++.+...+++|+..-++..
T Consensus 28 ~~DRvvAlD~l~~~~v~~i~l~a~~~~~~~~ldvalvlAll~Fv~tva~Aryl 80 (84)
T PRK12604 28 TVDRLVAVDIMTTITTGLMVLFALYYKRMIFLDVALVYAILAFVGVIAFARYL 80 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888888888888777778888888888888877765543
No 45
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=26.19 E-value=3.7e+02 Score=22.08 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011682 371 GIPPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 426 (479)
Q Consensus 371 Gi~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~ 426 (479)
.=.|++..|.+.+.............+.....-.+.++.+...+++|+..-++...
T Consensus 28 Pt~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~ 83 (87)
T PRK12612 28 KDILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIIS 83 (87)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999998888888888887776667788888888888888777665543
No 46
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=25.90 E-value=5.9e+02 Score=24.29 Aligned_cols=47 Identities=6% Similarity=0.194 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011682 155 ALLFQPLLVLGISIGVAFNVIFADWMITVLLIVLFLVLSTRAFLKGV 201 (479)
Q Consensus 155 ~l~l~~~~~~Ga~iGa~l~~~lp~~~l~~l~~~lll~~~~~~~~~g~ 201 (479)
+..-..+..+|..+|..+..++|++.-.++-.+++++++.+++++++
T Consensus 37 g~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 37 AVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344567778888888888888877788888999999999998764
No 47
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=25.64 E-value=4.7e+02 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=13.9
Q ss_pred HHHHHhhhhhHHHHHHHhhccCCCCC
Q 011682 448 VSALSLGGVGLAKMIKRIEHKEYMGF 473 (479)
Q Consensus 448 ~s~i~l~~~g~~~~i~~~~~~~~~~f 473 (479)
+-++.|.++|..-..++ ++|.|.|
T Consensus 117 i~t~il~y~G~~~~~k~--~de~~~l 140 (356)
T COG4956 117 ILTIILAYFGFQLADKK--RDEFLRL 140 (356)
T ss_pred HHHHHHHHHhhHHhhhh--hHHHHHh
Confidence 34556777887777653 3344444
No 48
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.12 E-value=4.1e+02 Score=22.52 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 011682 373 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVLK 426 (479)
Q Consensus 373 ~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~ 426 (479)
.|++..|-..+.....+.......+.....-.+.++.+...+++|+..-++...
T Consensus 34 ~~DRivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~ 87 (100)
T PRK12657 34 TADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIG 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999988888888888887776667788888888888888877666543
No 49
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=24.01 E-value=4.3e+02 Score=22.14 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 011682 159 QPLLVLGISIGVAFNVIFADW 179 (479)
Q Consensus 159 ~~~~~~Ga~iGa~l~~~lp~~ 179 (479)
..|+++|+.+|..+....|+.
T Consensus 40 i~Gt~iG~~~~~~~~~~~~~~ 60 (128)
T PF13515_consen 40 ILGTLIGVVLGLLLLYLFPGN 60 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCCH
Confidence 678899999999988888876
No 50
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=23.78 E-value=2.2e+02 Score=22.85 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Q 011682 408 LYFFALSIIAAFVGQHVLKKLIKILGRASIIIF 440 (479)
Q Consensus 408 ~~l~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ 440 (479)
+.+.+...++..+|..+.+++|++..+..-.++
T Consensus 41 ~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~l 73 (78)
T PF01169_consen 41 LALALATGLAVLLGSWLASRIPERYIKWVAGAL 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 446666788889999999999999988865544
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=23.44 E-value=7.6e+02 Score=24.74 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccCCCC
Q 011682 411 FALSIIAAFVGQHVLKKLIKILGRASIIIFTLSFIIFVSALSLGGVGLAKMIKRIEHKEYMG 472 (479)
Q Consensus 411 ~~~~~ig~~iG~~l~~~i~~~~~r~~lii~ll~~~i~~s~i~l~~~g~~~~i~~~~~~~~~~ 472 (479)
.+..+++.+.|+..+..+.+..=.+..- -+-+.+=.|+.+|.....+.+-+++++.
T Consensus 152 ~i~~fla~~~G~~~v~~il~~iP~~v~~------Gl~vaggmLPAvGfAmLl~~m~~k~~~~ 207 (265)
T TIGR00822 152 AIPALIVALVSQSAVQAMLKAIPEVVTH------GLQIAGGIIVVVGYAMVLRMMFKAYLMP 207 (265)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCHHHHHH------HHHHHHhhHHHHHHHHHHHHHhhcchHH
Confidence 3445777777777666665544332221 1122233355556555555555555543
No 52
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=23.36 E-value=7.3e+02 Score=24.55 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.1
Q ss_pred HhhhhhHHHHHHHhhccC
Q 011682 452 SLGGVGLAKMIKRIEHKE 469 (479)
Q Consensus 452 ~l~~~g~~~~i~~~~~~~ 469 (479)
+++|+.+.|.+.++.+++
T Consensus 212 lvPG~~l~nav~dl~~g~ 229 (250)
T COG2966 212 LVPGVPLTNAVRDLLSGH 229 (250)
T ss_pred HcCchHHHHHHHHHHcCc
Confidence 678889999999998764
No 53
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.32 E-value=7.5e+02 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhcCcccchhhHHHHHHHh
Q 011682 78 IVVGTIIGFFGTACGSVGGVGGGGIFVPMLNLI 110 (479)
Q Consensus 78 ~~~~~~iG~l~g~~~~~~GiGGG~i~vP~L~~~ 110 (479)
=++|+...+++|.+ .|..++|+...-
T Consensus 181 RivG~~LAv~aGvl-------yGs~fvPv~Yi~ 206 (254)
T PF07857_consen 181 RIVGIILAVFAGVL-------YGSNFVPVIYIQ 206 (254)
T ss_pred hhHhHHHHHHHHHH-------HhcccchHHHHH
Confidence 44677777777777 778999999874
No 54
>COG1784 Predicted membrane protein [Function unknown]
Probab=22.94 E-value=9.2e+02 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhh-ccchhhhH
Q 011682 335 ASQLVFYCACGITAGMVGGLL-GLGGGFIL 363 (479)
Q Consensus 335 ~~~~~~~~~~G~~aG~isGll-GiGGG~i~ 363 (479)
.++.....+.|-++|+.-+++ |++++...
T Consensus 215 ~~~~~k~~~~gslAG~~~~~LPGvs~aqa~ 244 (395)
T COG1784 215 GKRLLKSSFAGSLAGALVSFLPGVSPAQAA 244 (395)
T ss_pred ccccchhHHHHHHHHHHHHHcCCCcHHHHH
Confidence 344555666777777777766 56555443
No 55
>PRK01844 hypothetical protein; Provisional
Probab=22.93 E-value=2.1e+02 Score=22.89 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHH
Q 011682 410 FFALSIIAAFVGQHVLKKLIKILGRA 435 (479)
Q Consensus 410 l~~~~~ig~~iG~~l~~~i~~~~~r~ 435 (479)
..++.++|..+|-.+++|.-++.++.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667778877776654
No 56
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=8.1e+02 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=21.5
Q ss_pred HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011682 396 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKLIKI 431 (479)
Q Consensus 396 ~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i~~~ 431 (479)
|..+|.=+|---+.+...-+.+-..|.....+....
T Consensus 351 Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai 386 (593)
T KOG1277|consen 351 YARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAI 386 (593)
T ss_pred eehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 444566677766666666666666666555554443
No 57
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=22.45 E-value=7e+02 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhccchhh
Q 011682 341 YCACGITAGMVGGLLGLGGGF 361 (479)
Q Consensus 341 ~~~~G~~aG~isGllGiGGG~ 361 (479)
+..-|.+.|++||++|.+.+.
T Consensus 229 fl~eg~~~gl~G~~~g~~l~~ 249 (309)
T TIGR00439 229 FLYQGMWQSIFGALVSLILSG 249 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556688888888888876543
No 58
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=68 Score=30.88 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=20.1
Q ss_pred HHHHHHhhhcCcccchhhHHHHHHH
Q 011682 85 GFFGTACGSVGGVGGGGIFVPMLNL 109 (479)
Q Consensus 85 G~l~g~~~~~~GiGGG~i~vP~L~~ 109 (479)
||++|.+.+.+|+.||.++.=.|.-
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~ 161 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEG 161 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7999999999999999876555544
No 59
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=21.57 E-value=4.7e+02 Score=21.62 Aligned_cols=53 Identities=2% Similarity=0.091 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHH
Q 011682 373 PPQVSSATALFAITFSSSMSVVEYYLLKRFPVPYALYFFALSIIAAFVGQHVL 425 (479)
Q Consensus 373 ~p~vA~aTs~~~~~fss~~s~v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~ 425 (479)
.|++..|.+.......+.......+.....-.+.++.+...+++|+..-++..
T Consensus 31 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalv~All~Fv~tva~Ary~ 83 (87)
T PRK08381 31 LADRIVGLNTITTKVVGIIAILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYM 83 (87)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988888888888888777778888888888888877655543
No 60
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.23 E-value=2.6e+02 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 011682 154 LALLFQPLLVLGISIGVAFNVIFAD 178 (479)
Q Consensus 154 l~l~l~~~~~~Ga~iGa~l~~~lp~ 178 (479)
+++.+..+.++|.++|-++=..++.
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455667778888888888887764
No 61
>PRK10720 uracil transporter; Provisional
Probab=21.17 E-value=9.5e+02 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=18.3
Q ss_pred hhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 360 GFILGPLFLELGIPPQVSSATALFAITFSSSMSVVEYYLL 399 (479)
Q Consensus 360 G~i~~Plll~~Gi~p~vA~aTs~~~~~fss~~s~v~~~~~ 399 (479)
+.+.+|+++ |+++++ ..+.+...+.+|....
T Consensus 30 ~~i~~Pli~--gl~~~~-------~l~~sGi~TliQ~~~~ 60 (428)
T PRK10720 30 ATVLVPILF--HINPAT-------VLLFNGIGTLLYLFIC 60 (428)
T ss_pred HHHHHHhhc--CCCHHH-------HHHHHHHHHHHHHHhc
Confidence 567778765 777755 2355555555554443
No 62
>PRK11588 hypothetical protein; Provisional
Probab=20.86 E-value=1.1e+03 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=13.0
Q ss_pred hCCCchhhhHHHHHHHHHH
Q 011682 111 VGFDAKSSAAVSKCMVTGG 129 (479)
Q Consensus 111 ~g~~~~~Av~ts~~~i~~~ 129 (479)
+|+|+-+++++..+....+
T Consensus 185 lGyD~ivg~ai~~lg~~iG 203 (506)
T PRK11588 185 LGYDSITTVLVTYVATQIG 203 (506)
T ss_pred hCCcHHHHHHHHHHHhhhh
Confidence 6888888777766655433
No 63
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=20.17 E-value=3.6e+02 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011682 153 DLALLFQPLLVLGISIGVAFNVIFAD 178 (479)
Q Consensus 153 ~l~l~l~~~~~~Ga~iGa~l~~~lp~ 178 (479)
.++.-+..+.++|..+|-++-++++.
T Consensus 5 ~lg~~~~~~i~~g~~~G~~lD~~~~t 30 (55)
T PF09527_consen 5 QLGFTMAAPILVGFFLGYWLDKWFGT 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35566677778888888888777754
Done!