Query 011682
Match_columns 479
No_of_seqs 323 out of 2157
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 13:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 15.7 4.8E+02 0.017 25.7 8.6 33 396-428 121-153 (340)
2 3llq_A Aquaporin Z 2; aquapori 12.7 2.9E+02 0.0099 26.1 5.8 34 395-428 97-130 (256)
3 2o9g_A Aquaporin Z; integral m 11.7 3.4E+02 0.012 25.0 6.0 35 394-428 71-105 (234)
4 3gd8_A Aquaporin-4; proton exc 11.7 3.5E+02 0.012 24.8 6.0 33 396-428 73-105 (223)
5 3d9s_A Aquaporin-5, AQP-5; aqu 11.5 3.5E+02 0.012 25.6 6.0 35 394-428 75-109 (266)
6 1j4n_A Aquaporin 1; membrane p 11.4 3.5E+02 0.012 25.6 6.0 35 394-428 83-117 (271)
7 2w2e_A AQY1, aquaporin, aquapo 11.3 3.5E+02 0.012 25.8 6.0 35 394-428 117-151 (279)
8 2f2b_A Aquaporin AQPM; protein 10.9 3.6E+02 0.012 25.0 5.8 35 394-428 87-121 (246)
9 3cn5_A Aquaporin; membrane pro 10.9 3.6E+02 0.012 26.1 6.0 35 394-428 129-163 (304)
10 2b6o_A Aquaporin-0, lens fiber 10.3 4E+02 0.014 25.0 5.9 35 394-428 73-107 (263)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=15.70 E-value=4.8e+02 Score=25.69 Aligned_cols=33 Identities=9% Similarity=0.366 Sum_probs=27.5
Q ss_pred HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 396 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 396 ~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
.++.|+++|.-+...++.-++|+++|+.+++-+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456699999999999999999999999877654
No 2
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=12.71 E-value=2.9e+02 Score=26.06 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 395 EYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 395 ~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
..++.|+++|.......+.-++|+++|+.+++-+
T Consensus 97 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 97 GLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999887754
No 3
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=11.75 E-value=3.4e+02 Score=24.99 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..+..|+++|.......+.-++|+++|+.+++-+
T Consensus 71 la~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999887654
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=11.73 E-value=3.5e+02 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 396 YYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 396 ~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
.+..|+++|.......+.-++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999887654
No 5
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=11.54 E-value=3.5e+02 Score=25.59 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=29.7
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..+..|+++|.......+.-++|+++|+.+++-+
T Consensus 75 la~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 75 LALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999887765
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=11.37 E-value=3.5e+02 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..++.|+++|.......+.-++|+++|+.+++-+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999888755
No 7
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=11.35 E-value=3.5e+02 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..++.|+++|.-+....+.-++|+++|+.+++-+
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999998877754
No 8
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=10.95 E-value=3.6e+02 Score=25.03 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=29.7
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..+..|+++|.......+.-++|+++|+.+++-+
T Consensus 87 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 87 IGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567799999999999999999999999887755
No 9
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=10.91 E-value=3.6e+02 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=30.1
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..++.|+++|..+...++.-++|+++|+.+++-+
T Consensus 129 la~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999888765
No 10
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=10.25 E-value=4e+02 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 011682 394 VEYYLLKRFPVPYALYFFALSIIAAFVGQHVLKKL 428 (479)
Q Consensus 394 v~~~~~g~i~~~~a~~l~~~~~ig~~iG~~l~~~i 428 (479)
+..++.|+++|.......+.-++|+++|+.+++.+
T Consensus 73 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 107 (263)
T 2b6o_A 73 FAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSV 107 (263)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456799999999999999999999999888766
Done!