Query 011684
Match_columns 479
No_of_seqs 312 out of 2214
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05704 dihydrolipoamide succ 100.0 1.8E-86 3.8E-91 689.5 41.5 395 59-479 3-405 (407)
2 TIGR01347 sucB 2-oxoglutarate 100.0 6.2E-86 1.3E-90 684.0 42.0 393 59-479 1-401 (403)
3 PLN02744 dihydrolipoyllysine-r 100.0 2.3E-85 4.9E-90 694.4 42.2 421 46-479 97-539 (539)
4 KOG0557 Dihydrolipoamide acety 100.0 3.7E-85 8E-90 661.5 34.2 421 55-479 35-470 (470)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 3.4E-84 7.3E-89 700.9 43.4 420 57-476 134-584 (590)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 1.8E-83 4E-88 672.7 42.6 413 60-479 1-435 (435)
7 PLN02528 2-oxoisovalerate dehy 100.0 2.1E-83 4.7E-88 668.7 41.1 403 61-479 1-413 (416)
8 TIGR01348 PDHac_trf_long pyruv 100.0 2.9E-83 6.2E-88 688.8 43.0 414 58-479 116-546 (546)
9 PRK11854 aceF pyruvate dehydro 100.0 2.4E-80 5.1E-85 677.6 45.0 412 57-479 205-633 (633)
10 PRK11856 branched-chain alpha- 100.0 1.7E-79 3.7E-84 642.7 42.9 403 59-479 3-410 (411)
11 PRK11855 dihydrolipoamide acet 100.0 1.6E-79 3.5E-84 662.5 43.9 415 58-479 119-547 (547)
12 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.1E-79 4.6E-84 636.0 37.2 394 58-479 2-403 (404)
13 PLN02226 2-oxoglutarate dehydr 100.0 8.7E-76 1.9E-80 609.7 39.5 366 55-479 88-461 (463)
14 PTZ00144 dihydrolipoamide succ 100.0 1.1E-74 2.4E-79 597.9 37.1 368 55-479 41-416 (418)
15 KOG0558 Dihydrolipoamide trans 100.0 2.7E-72 5.8E-77 544.8 25.5 403 56-479 62-471 (474)
16 PRK11857 dihydrolipoamide acet 100.0 3.8E-67 8.2E-72 525.1 29.8 292 186-478 2-304 (306)
17 PRK14843 dihydrolipoamide acet 100.0 4.9E-67 1.1E-71 532.7 29.3 292 184-479 47-347 (347)
18 KOG0559 Dihydrolipoamide succi 100.0 3E-65 6.5E-70 498.1 19.3 369 56-479 70-455 (457)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 5.8E-56 1.3E-60 429.6 21.5 222 257-479 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 6.9E-45 1.5E-49 393.3 26.6 215 258-472 115-349 (1228)
21 PF00302 CAT: Chloramphenicol 100.0 2.6E-30 5.6E-35 245.7 21.2 194 263-468 8-206 (206)
22 PRK13757 chloramphenicol acety 100.0 3.2E-30 6.9E-35 246.5 21.3 181 280-473 30-214 (219)
23 COG4845 Chloramphenicol O-acet 99.9 7.1E-26 1.5E-30 207.6 18.5 190 276-478 24-218 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.8 9.6E-19 2.1E-23 140.0 8.6 74 59-132 1-74 (74)
25 PRK14875 acetoin dehydrogenase 99.8 2E-18 4.4E-23 177.3 11.6 120 58-220 2-121 (371)
26 PRK06748 hypothetical protein; 99.7 4.5E-16 9.7E-21 126.1 10.6 62 73-134 13-75 (83)
27 PRK05889 putative acetyl-CoA c 99.6 8.3E-15 1.8E-19 116.2 9.6 61 73-133 11-71 (71)
28 COG0511 AccB Biotin carboxyl c 99.5 1.2E-14 2.5E-19 130.5 8.4 61 73-133 79-139 (140)
29 PRK11892 pyruvate dehydrogenas 99.5 2.9E-14 6.2E-19 151.1 12.2 81 59-139 3-84 (464)
30 cd06663 Biotinyl_lipoyl_domain 99.5 5.5E-14 1.2E-18 111.8 10.2 72 61-132 2-73 (73)
31 PLN02983 biotin carboxyl carri 99.5 2.8E-13 6.1E-18 130.5 13.5 71 55-133 203-273 (274)
32 PRK08225 acetyl-CoA carboxylas 99.5 1.7E-13 3.7E-18 108.3 9.0 61 73-133 10-70 (70)
33 PRK11854 aceF pyruvate dehydro 99.5 1.6E-13 3.5E-18 151.2 11.2 75 59-135 3-77 (633)
34 TIGR02927 SucB_Actino 2-oxoglu 99.4 5.2E-13 1.1E-17 145.8 10.7 77 59-135 3-79 (590)
35 PRK06549 acetyl-CoA carboxylas 99.4 8.9E-13 1.9E-17 116.1 9.4 60 73-132 70-129 (130)
36 PF02817 E3_binding: e3 bindin 99.4 2.4E-13 5.3E-18 94.3 3.8 38 185-222 2-39 (39)
37 PRK05641 putative acetyl-CoA c 99.4 2.2E-12 4.8E-17 117.0 9.2 60 73-132 93-152 (153)
38 PRK07051 hypothetical protein; 99.4 5.6E-12 1.2E-16 102.4 10.4 69 59-133 4-79 (80)
39 PRK11855 dihydrolipoamide acet 99.3 3.4E-12 7.4E-17 138.8 10.8 78 59-137 3-80 (547)
40 TIGR00531 BCCP acetyl-CoA carb 99.3 5.8E-12 1.3E-16 115.0 8.5 61 73-133 89-156 (156)
41 TIGR01348 PDHac_trf_long pyruv 99.3 6.7E-12 1.5E-16 136.1 10.2 75 60-135 2-76 (546)
42 cd06850 biotinyl_domain The bi 99.3 1.4E-11 3.1E-16 95.4 9.2 61 72-132 7-67 (67)
43 PRK14042 pyruvate carboxylase 99.3 1.5E-11 3.3E-16 133.4 11.3 62 73-134 534-595 (596)
44 PRK06302 acetyl-CoA carboxylas 99.3 1.9E-11 4.1E-16 111.5 8.8 61 73-133 88-155 (155)
45 cd06849 lipoyl_domain Lipoyl d 99.2 1.9E-10 4.1E-15 89.2 11.1 73 60-132 2-74 (74)
46 TIGR01108 oadA oxaloacetate de 99.1 2.8E-10 6E-15 124.0 9.4 57 73-129 526-582 (582)
47 TIGR02712 urea_carbox urea car 99.1 2.9E-10 6.2E-15 133.2 9.6 61 73-133 1141-1201(1201)
48 PRK14040 oxaloacetate decarbox 99.1 5.8E-10 1.3E-14 121.7 10.7 61 73-133 533-593 (593)
49 TIGR01235 pyruv_carbox pyruvat 99.1 4.6E-10 1E-14 130.3 10.5 61 73-133 1083-1143(1143)
50 COG4770 Acetyl/propionyl-CoA c 99.0 7.9E-10 1.7E-14 116.0 7.5 61 73-133 584-644 (645)
51 PRK09282 pyruvate carboxylase 98.9 3E-09 6.5E-14 116.3 9.9 61 73-133 531-591 (592)
52 PRK12999 pyruvate carboxylase; 98.9 4.7E-09 1E-13 122.5 10.5 61 73-133 1085-1145(1146)
53 COG1038 PycA Pyruvate carboxyl 98.9 1.8E-09 3.9E-14 116.7 6.3 81 45-133 1068-1148(1149)
54 KOG0369 Pyruvate carboxylase [ 98.7 2E-08 4.4E-13 106.7 6.1 82 44-133 1094-1175(1176)
55 KOG0238 3-Methylcrotonyl-CoA c 98.3 4.6E-07 1E-11 94.2 4.3 60 73-132 610-669 (670)
56 cd06848 GCS_H Glycine cleavage 98.3 1.3E-06 2.9E-11 73.3 6.2 64 58-122 15-79 (96)
57 TIGR03077 not_gcvH glycine cle 98.1 7.4E-06 1.6E-10 70.4 5.7 40 81-120 39-78 (110)
58 KOG0368 Acetyl-CoA carboxylase 98.0 1.1E-05 2.4E-10 92.3 7.4 65 71-136 692-756 (2196)
59 PRK09783 copper/silver efflux 98.0 3E-05 6.5E-10 81.8 9.5 64 73-136 132-244 (409)
60 PRK00624 glycine cleavage syst 97.9 2E-05 4.4E-10 68.1 6.2 43 74-116 33-76 (114)
61 PRK13380 glycine cleavage syst 97.9 1.6E-05 3.6E-10 71.6 5.8 49 73-121 44-93 (144)
62 TIGR00998 8a0101 efflux pump m 97.9 4.2E-05 9.1E-10 78.1 9.2 35 102-136 205-239 (334)
63 PRK10559 p-hydroxybenzoic acid 97.9 3.7E-05 8.1E-10 78.1 7.7 64 73-136 56-189 (310)
64 PRK01202 glycine cleavage syst 97.8 6E-05 1.3E-09 66.6 7.6 56 81-136 46-108 (127)
65 TIGR01730 RND_mfp RND family e 97.8 5.6E-05 1.2E-09 76.3 8.1 65 72-136 34-169 (322)
66 PRK10476 multidrug resistance 97.7 7E-05 1.5E-09 77.2 7.6 35 102-136 209-243 (346)
67 PRK15136 multidrug efflux syst 97.6 0.00012 2.6E-09 76.8 7.7 35 102-136 216-250 (390)
68 PRK09578 periplasmic multidrug 97.6 0.00022 4.9E-09 74.5 8.9 63 73-135 72-207 (385)
69 PRK15030 multidrug efflux syst 97.6 0.00024 5.2E-09 74.7 9.1 63 73-135 74-209 (397)
70 PRK12784 hypothetical protein; 97.6 0.00037 8.1E-09 54.9 7.5 65 71-135 12-77 (84)
71 PRK03598 putative efflux pump 97.6 0.00014 3.1E-09 74.4 6.9 34 102-135 204-237 (331)
72 PRK09859 multidrug efflux syst 97.5 0.00032 6.9E-09 73.4 8.9 63 73-135 70-205 (385)
73 PRK14843 dihydrolipoamide acet 97.5 5.8E-05 1.2E-09 77.8 3.1 42 185-226 5-46 (347)
74 PF13533 Biotin_lipoyl_2: Biot 97.5 0.00028 6.2E-09 51.8 5.5 38 101-138 2-39 (50)
75 TIGR00527 gcvH glycine cleavag 97.5 0.00017 3.8E-09 63.7 5.1 48 73-120 36-84 (127)
76 PRK11556 multidrug efflux syst 97.3 0.00071 1.5E-08 71.6 8.7 63 72-134 95-230 (415)
77 PRK11578 macrolide transporter 97.3 0.001 2.2E-08 69.3 9.2 34 103-136 185-221 (370)
78 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00035 7.6E-09 51.3 3.5 28 72-99 10-37 (50)
79 PF12700 HlyD_2: HlyD family s 97.2 0.00036 7.8E-09 70.6 4.5 64 72-136 29-194 (328)
80 PF01597 GCV_H: Glycine cleava 97.1 0.0012 2.6E-08 58.0 6.3 44 73-116 31-75 (122)
81 TIGR02971 heterocyst_DevB ABC 97.0 0.0015 3.2E-08 66.6 7.2 33 103-136 206-238 (327)
82 TIGR03309 matur_yqeB selenium- 97.0 0.0024 5.2E-08 62.5 7.5 70 55-136 161-230 (256)
83 COG0509 GcvH Glycine cleavage 96.9 0.0017 3.6E-08 57.1 5.6 37 81-117 48-84 (131)
84 PF13375 RnfC_N: RnfC Barrel s 96.6 0.0036 7.7E-08 53.1 4.9 53 60-116 29-81 (101)
85 PRK05889 putative acetyl-CoA c 96.5 0.0043 9.4E-08 48.9 4.9 34 103-136 4-37 (71)
86 TIGR00999 8a0102 Membrane Fusi 96.4 0.0059 1.3E-07 60.0 6.2 35 102-136 89-123 (265)
87 TIGR01843 type_I_hlyD type I s 96.4 0.013 2.7E-07 61.6 9.1 34 102-135 272-306 (423)
88 COG1566 EmrA Multidrug resista 96.4 0.011 2.3E-07 61.0 8.2 36 101-136 208-243 (352)
89 PRK06748 hypothetical protein; 95.9 0.014 3E-07 47.6 4.8 32 103-134 6-37 (83)
90 cd06253 M14_ASTE_ASPA_like_3 A 95.9 0.026 5.7E-07 57.1 8.0 58 73-132 237-297 (298)
91 cd06250 M14_PaAOTO_like An unc 95.6 0.033 7.1E-07 57.9 7.7 59 72-132 296-358 (359)
92 cd06252 M14_ASTE_ASPA_like_2 A 95.6 0.047 1E-06 55.7 8.3 59 73-133 252-314 (316)
93 cd06251 M14_ASTE_ASPA_like_1 A 95.6 0.046 1E-06 55.0 8.1 56 75-132 229-286 (287)
94 PF07247 AATase: Alcohol acety 95.5 0.3 6.6E-06 52.4 14.8 40 284-323 251-290 (480)
95 cd06850 biotinyl_domain The bi 95.4 0.025 5.5E-07 43.0 4.4 31 104-134 2-32 (67)
96 PRK08225 acetyl-CoA carboxylas 95.4 0.033 7.2E-07 43.6 5.1 34 103-136 3-36 (70)
97 TIGR02994 ectoine_eutE ectoine 95.2 0.06 1.3E-06 55.2 7.6 58 73-132 263-324 (325)
98 COG0511 AccB Biotin carboxyl c 95.0 0.034 7.4E-07 50.0 4.7 36 101-136 70-105 (140)
99 PF13437 HlyD_3: HlyD family s 95.0 0.035 7.6E-07 46.7 4.5 33 103-135 1-33 (105)
100 COG3608 Predicted deacylase [G 94.8 0.052 1.1E-06 55.2 5.9 60 72-133 263-325 (331)
101 PF09891 DUF2118: Uncharacteri 94.7 0.042 9.1E-07 49.7 4.4 46 71-116 87-133 (150)
102 PF05896 NQRA: Na(+)-transloca 94.5 0.039 8.5E-07 54.2 4.1 42 73-117 38-81 (257)
103 PRK06549 acetyl-CoA carboxylas 94.2 0.085 1.9E-06 46.8 5.2 36 101-136 61-96 (130)
104 cd06254 M14_ASTE_ASPA_like_4 A 94.2 0.1 2.2E-06 52.5 6.5 55 73-129 231-287 (288)
105 PF00364 Biotin_lipoyl: Biotin 94.2 0.079 1.7E-06 42.0 4.5 34 103-136 2-41 (74)
106 PRK07051 hypothetical protein; 93.6 0.096 2.1E-06 42.3 4.1 26 71-96 54-79 (80)
107 PF00529 HlyD: HlyD family sec 93.6 0.074 1.6E-06 53.1 4.1 37 102-138 2-38 (305)
108 PRK10476 multidrug resistance 93.5 0.17 3.7E-06 52.1 6.8 42 93-136 42-83 (346)
109 PRK05641 putative acetyl-CoA c 93.4 0.14 3E-06 46.8 5.1 36 101-136 84-119 (153)
110 TIGR00998 8a0101 efflux pump m 93.3 0.13 2.8E-06 52.4 5.5 37 101-137 42-78 (334)
111 PRK11556 multidrug efflux syst 93.1 0.27 5.8E-06 52.1 7.6 58 79-137 66-123 (415)
112 TIGR01235 pyruv_carbox pyruvat 93.0 0.3 6.4E-06 58.1 8.4 80 56-136 1020-1109(1143)
113 PRK09859 multidrug efflux syst 92.9 0.33 7.3E-06 50.8 8.0 57 79-136 40-96 (385)
114 TIGR02971 heterocyst_DevB ABC 92.8 0.17 3.6E-06 51.6 5.4 43 94-136 6-51 (327)
115 PF00529 HlyD: HlyD family sec 92.3 0.13 2.8E-06 51.3 3.8 28 72-99 9-36 (305)
116 TIGR01730 RND_mfp RND family e 92.0 0.3 6.4E-06 49.1 6.0 36 101-136 26-61 (322)
117 PF12700 HlyD_2: HlyD family s 91.8 0.19 4.2E-06 50.6 4.4 42 92-136 14-55 (328)
118 PRK11578 macrolide transporter 91.8 0.35 7.7E-06 50.2 6.4 60 75-135 36-95 (370)
119 TIGR01936 nqrA NADH:ubiquinone 91.5 0.18 4E-06 53.8 4.0 45 71-116 36-80 (447)
120 PRK09578 periplasmic multidrug 91.5 0.45 9.7E-06 49.8 6.9 56 80-136 43-98 (385)
121 TIGR01000 bacteriocin_acc bact 91.5 0.4 8.7E-06 51.4 6.6 40 98-137 56-95 (457)
122 PRK15136 multidrug efflux syst 91.5 0.36 7.8E-06 50.7 6.1 37 101-137 61-97 (390)
123 PRK10559 p-hydroxybenzoic acid 91.4 0.37 8.1E-06 49.0 5.9 36 102-137 48-83 (310)
124 TIGR01945 rnfC electron transp 91.1 0.2 4.3E-06 53.5 3.7 43 73-116 40-82 (435)
125 COG1726 NqrA Na+-transporting 90.9 0.2 4.3E-06 51.0 3.3 38 77-117 42-81 (447)
126 PF00668 Condensation: Condens 90.8 2.3 5E-05 41.3 10.8 31 444-474 129-159 (301)
127 TIGR03794 NHPM_micro_HlyD NHPM 90.7 0.48 1E-05 50.2 6.2 37 101-137 58-94 (421)
128 PRK03598 putative efflux pump 90.7 0.3 6.5E-06 49.9 4.5 36 101-136 43-78 (331)
129 PRK05035 electron transport co 90.5 0.23 5E-06 55.9 3.7 53 60-116 36-88 (695)
130 TIGR01843 type_I_hlyD type I s 90.5 0.42 9.1E-06 50.1 5.6 45 93-137 35-79 (423)
131 PRK05352 Na(+)-translocating N 90.3 0.22 4.7E-06 53.3 3.2 44 72-116 38-81 (448)
132 cd06255 M14_ASTE_ASPA_like_5 A 90.2 0.84 1.8E-05 46.1 7.1 43 73-115 239-283 (293)
133 PF07831 PYNP_C: Pyrimidine nu 90.1 0.26 5.7E-06 39.4 2.7 27 72-98 30-56 (75)
134 KOG3373 Glycine cleavage syste 89.6 0.25 5.4E-06 44.9 2.4 39 81-119 89-127 (172)
135 PRK15030 multidrug efflux syst 89.6 1.1 2.5E-05 47.0 7.9 43 93-136 58-100 (397)
136 cd00210 PTS_IIA_glc PTS_IIA, P 89.3 1.3 2.7E-05 39.0 6.6 19 116-134 85-103 (124)
137 PRK14042 pyruvate carboxylase 88.9 0.95 2.1E-05 50.1 6.8 35 102-136 526-560 (596)
138 PF04952 AstE_AspA: Succinylgl 88.6 1.4 3E-05 44.1 7.4 59 73-133 228-290 (292)
139 PRK09783 copper/silver efflux 88.3 1 2.2E-05 47.7 6.5 46 91-136 112-159 (409)
140 TIGR02946 acyl_WS_DGAT acyltra 88.3 8.1 0.00018 40.9 13.3 164 285-473 232-441 (446)
141 TIGR00531 BCCP acetyl-CoA carb 87.9 0.5 1.1E-05 43.2 3.3 26 71-96 131-156 (156)
142 COG4072 Uncharacterized protei 87.5 1.2 2.5E-05 39.4 5.1 45 71-115 98-143 (161)
143 PRK06302 acetyl-CoA carboxylas 87.5 0.6 1.3E-05 42.7 3.6 26 71-96 130-155 (155)
144 PRK09439 PTS system glucose-sp 87.3 1.3 2.9E-05 41.0 5.7 66 59-134 21-125 (169)
145 TIGR03794 NHPM_micro_HlyD NHPM 87.3 0.91 2E-05 48.1 5.4 27 73-99 67-93 (421)
146 TIGR01000 bacteriocin_acc bact 87.3 0.87 1.9E-05 48.8 5.3 26 73-98 68-93 (457)
147 PLN02983 biotin carboxyl carri 87.2 0.79 1.7E-05 45.2 4.4 36 102-137 198-240 (274)
148 PF00358 PTS_EIIA_1: phosphoen 87.0 1.3 2.9E-05 39.3 5.4 58 73-134 11-107 (132)
149 COG4656 RnfC Predicted NADH:ub 86.4 0.56 1.2E-05 50.3 3.1 53 59-116 31-83 (529)
150 TIGR00830 PTBA PTS system, glu 86.0 1.9 4.1E-05 37.8 5.7 19 115-133 84-102 (121)
151 COG0845 AcrA Membrane-fusion p 86.0 3 6.5E-05 41.8 8.1 47 88-135 54-100 (372)
152 PLN02226 2-oxoglutarate dehydr 85.8 1.2 2.6E-05 47.7 5.3 28 71-98 141-168 (463)
153 PF02749 QRPTase_N: Quinolinat 85.5 0.74 1.6E-05 37.8 2.8 23 75-97 46-68 (88)
154 TIGR00164 PS_decarb_rel phosph 85.2 1.8 3.9E-05 40.8 5.6 53 73-130 130-182 (189)
155 PRK14040 oxaloacetate decarbox 84.9 1.9 4.1E-05 47.9 6.4 36 101-136 524-559 (593)
156 PF13437 HlyD_3: HlyD family s 84.4 1.8 4E-05 36.1 4.8 28 71-98 6-33 (105)
157 PRK05305 phosphatidylserine de 84.2 2.1 4.6E-05 40.9 5.7 54 73-131 150-204 (206)
158 PRK09294 acyltransferase PapA5 84.0 25 0.00054 36.9 14.3 39 285-323 209-247 (416)
159 TIGR01108 oadA oxaloacetate de 83.9 1.5 3.2E-05 48.7 5.0 36 102-137 518-553 (582)
160 PRK09282 pyruvate carboxylase 83.3 3.3 7.1E-05 46.0 7.4 36 101-136 522-557 (592)
161 COG2190 NagE Phosphotransferas 82.6 2.5 5.3E-05 38.6 5.1 18 116-133 92-109 (156)
162 PRK14875 acetoin dehydrogenase 82.5 2.3 5E-05 43.4 5.6 29 71-99 52-80 (371)
163 COG1566 EmrA Multidrug resista 81.8 2.8 6.1E-05 43.4 5.8 39 101-139 53-91 (352)
164 PRK12784 hypothetical protein; 80.9 1.7 3.7E-05 34.6 3.0 41 98-138 1-42 (84)
165 cd00210 PTS_IIA_glc PTS_IIA, P 80.1 1.5 3.3E-05 38.5 2.8 27 72-98 78-104 (124)
166 cd06663 Biotinyl_lipoyl_domain 80.0 4.6 0.0001 31.3 5.3 33 57-95 41-73 (73)
167 COG4770 Acetyl/propionyl-CoA c 79.6 2.2 4.8E-05 46.3 4.3 34 103-136 577-610 (645)
168 PF02666 PS_Dcarbxylase: Phosp 79.5 3 6.6E-05 39.6 4.9 59 71-131 143-202 (202)
169 COG0845 AcrA Membrane-fusion p 79.4 1.7 3.6E-05 43.7 3.3 27 71-97 73-99 (372)
170 TIGR00830 PTBA PTS system, glu 79.3 1.6 3.5E-05 38.2 2.6 27 72-98 78-104 (121)
171 COG2190 NagE Phosphotransferas 78.4 3.9 8.5E-05 37.3 4.9 74 58-132 70-153 (156)
172 PTZ00144 dihydrolipoamide succ 77.8 3.8 8.2E-05 43.5 5.4 28 71-98 94-121 (418)
173 TIGR02712 urea_carbox urea car 77.7 2.9 6.3E-05 50.3 5.0 35 102-136 1133-1167(1201)
174 KOG0559 Dihydrolipoamide succi 77.6 2.7 5.9E-05 43.1 4.0 38 57-98 112-149 (457)
175 PRK09439 PTS system glucose-sp 77.4 4.1 8.9E-05 37.8 4.9 41 58-99 85-127 (169)
176 COG0508 AceF Pyruvate/2-oxoglu 77.4 2.5 5.4E-05 44.7 3.9 30 108-137 15-44 (404)
177 PRK12999 pyruvate carboxylase; 77.2 7.7 0.00017 46.5 8.3 36 101-136 1076-1111(1146)
178 TIGR01995 PTS-II-ABC-beta PTS 75.8 3.1 6.7E-05 46.4 4.3 73 58-132 527-609 (610)
179 cd06849 lipoyl_domain Lipoyl d 74.9 3.5 7.7E-05 30.6 3.3 24 72-95 51-74 (74)
180 TIGR02645 ARCH_P_rylase putati 74.9 7.2 0.00016 42.2 6.6 44 93-136 405-472 (493)
181 PRK09824 PTS system beta-gluco 73.2 6.3 0.00014 44.1 5.9 59 72-134 486-583 (627)
182 PRK05704 dihydrolipoamide succ 73.2 4.1 8.9E-05 43.2 4.2 29 71-99 52-80 (407)
183 TIGR01347 sucB 2-oxoglutarate 72.8 4.4 9.5E-05 42.9 4.3 28 71-98 50-77 (403)
184 PRK03934 phosphatidylserine de 72.8 8.2 0.00018 38.4 6.1 56 73-132 210-265 (265)
185 PRK10255 PTS system N-acetyl g 72.6 7.6 0.00017 43.5 6.3 67 58-134 498-603 (648)
186 TIGR01995 PTS-II-ABC-beta PTS 72.6 7.7 0.00017 43.3 6.4 59 72-134 470-567 (610)
187 PF00358 PTS_EIIA_1: phosphoen 71.8 2.5 5.5E-05 37.6 1.9 42 57-99 66-109 (132)
188 PRK09824 PTS system beta-gluco 71.0 4.7 0.0001 45.0 4.3 60 72-132 558-625 (627)
189 PLN02528 2-oxoisovalerate dehy 70.5 5.4 0.00012 42.4 4.4 29 71-99 48-76 (416)
190 TIGR03327 AMP_phos AMP phospho 69.2 12 0.00026 40.5 6.7 42 95-136 408-473 (500)
191 PRK04350 thymidine phosphoryla 69.1 12 0.00027 40.4 6.7 42 95-136 399-464 (490)
192 PRK06078 pyrimidine-nucleoside 69.0 12 0.00026 39.9 6.5 44 95-138 329-403 (434)
193 TIGR02643 T_phosphoryl thymidi 68.4 13 0.00028 39.7 6.6 39 97-135 335-404 (437)
194 TIGR03309 matur_yqeB selenium- 68.3 7.6 0.00017 38.3 4.6 33 101-134 164-196 (256)
195 PRK05820 deoA thymidine phosph 65.7 15 0.00033 39.2 6.6 40 97-136 336-406 (440)
196 PRK02597 rpoC2 DNA-directed RN 65.4 25 0.00055 42.5 8.8 56 77-132 404-506 (1331)
197 PRK03140 phosphatidylserine de 65.3 7.7 0.00017 38.5 4.0 57 73-132 202-258 (259)
198 PF01551 Peptidase_M23: Peptid 65.1 13 0.00027 30.5 4.7 57 70-135 19-75 (96)
199 PRK14844 bifunctional DNA-dire 64.0 12 0.00025 48.0 5.9 20 77-96 2423-2442(2836)
200 cd06255 M14_ASTE_ASPA_like_5 A 63.6 9.8 0.00021 38.4 4.5 35 101-136 231-265 (293)
201 TIGR01349 PDHac_trf_mito pyruv 63.0 9.4 0.0002 40.8 4.5 29 71-99 49-78 (435)
202 TIGR02644 Y_phosphoryl pyrimid 62.9 15 0.00032 39.0 5.7 42 95-136 327-399 (405)
203 COG1038 PycA Pyruvate carboxyl 62.1 14 0.0003 42.0 5.6 34 103-136 1081-1114(1149)
204 COG0157 NadC Nicotinate-nucleo 61.5 8.1 0.00017 38.6 3.3 23 74-96 64-86 (280)
205 cd06251 M14_ASTE_ASPA_like_1 A 61.1 12 0.00025 37.6 4.6 35 101-136 219-253 (287)
206 cd06253 M14_ASTE_ASPA_like_3 A 61.0 11 0.00024 38.1 4.4 34 101-135 229-262 (298)
207 PRK10255 PTS system N-acetyl g 60.5 10 0.00022 42.5 4.3 28 72-99 578-605 (648)
208 cd06254 M14_ASTE_ASPA_like_4 A 59.5 13 0.00028 37.3 4.6 36 100-136 222-257 (288)
209 cd06250 M14_PaAOTO_like An unc 59.4 13 0.00028 38.8 4.6 34 102-136 290-323 (359)
210 KOG0369 Pyruvate carboxylase [ 58.9 7.6 0.00016 43.1 2.8 34 103-136 1108-1141(1176)
211 PLN00140 alcohol acetyltransfe 58.7 11 0.00024 40.3 4.1 30 444-473 148-177 (444)
212 PLN02663 hydroxycinnamoyl-CoA: 58.2 11 0.00024 39.9 4.0 30 444-473 145-174 (431)
213 PF07831 PYNP_C: Pyrimidine nu 58.0 19 0.0004 28.7 4.3 30 107-138 30-59 (75)
214 TIGR00163 PS_decarb phosphatid 57.7 11 0.00023 37.0 3.5 48 83-131 189-236 (238)
215 TIGR02994 ectoine_eutE ectoine 57.5 15 0.00032 37.8 4.6 34 101-135 255-288 (325)
216 PLN02481 Omega-hydroxypalmitat 56.2 13 0.00028 39.6 4.1 30 444-473 158-187 (436)
217 PRK11892 pyruvate dehydrogenas 56.1 14 0.0003 39.9 4.3 29 70-98 51-80 (464)
218 cd01572 QPRTase Quinolinate ph 56.0 12 0.00025 37.4 3.5 24 73-96 57-80 (268)
219 cd06252 M14_ASTE_ASPA_like_2 A 55.4 23 0.0005 36.1 5.6 36 99-135 242-277 (316)
220 PF06898 YqfD: Putative stage 55.4 17 0.00037 38.2 4.8 53 72-131 167-226 (385)
221 PRK08072 nicotinate-nucleotide 54.7 13 0.00028 37.4 3.5 21 76-96 66-86 (277)
222 PRK10252 entF enterobactin syn 54.5 1.2E+02 0.0025 36.8 12.3 28 444-471 133-160 (1296)
223 PF02458 Transferase: Transfer 54.5 14 0.0003 38.8 4.0 30 444-473 147-176 (432)
224 PRK11856 branched-chain alpha- 53.0 16 0.00035 38.6 4.2 29 71-99 52-80 (411)
225 COG4908 Uncharacterized protei 52.7 2.5E+02 0.0053 29.9 12.4 87 285-379 218-317 (439)
226 cd06910 M14_ASTE_ASPA_like_7 A 52.4 20 0.00043 35.7 4.5 45 80-131 226-271 (272)
227 PRK05820 deoA thymidine phosph 52.3 12 0.00025 40.1 2.9 30 68-97 375-404 (440)
228 PRK06543 nicotinate-nucleotide 51.4 16 0.00034 36.8 3.5 23 74-96 65-87 (281)
229 PRK06096 molybdenum transport 51.4 15 0.00033 36.9 3.5 22 75-96 62-83 (284)
230 PRK00044 psd phosphatidylserin 51.0 16 0.00036 36.7 3.7 59 74-134 224-287 (288)
231 TIGR02645 ARCH_P_rylase putati 50.9 14 0.0003 40.1 3.2 32 66-97 439-470 (493)
232 PF07247 AATase: Alcohol acety 50.9 16 0.00035 39.1 3.9 32 443-474 140-171 (480)
233 PF01551 Peptidase_M23: Peptid 50.8 14 0.0003 30.3 2.6 27 72-98 49-75 (96)
234 KOG0238 3-Methylcrotonyl-CoA c 50.1 14 0.0003 39.9 3.0 33 104-136 604-636 (670)
235 PLN03157 spermidine hydroxycin 49.9 18 0.00039 38.5 4.0 30 444-473 146-175 (447)
236 PRK04350 thymidine phosphoryla 49.8 15 0.00033 39.8 3.3 32 66-97 431-462 (490)
237 PRK05742 nicotinate-nucleotide 49.7 17 0.00037 36.5 3.5 21 76-96 68-88 (277)
238 PF09891 DUF2118: Uncharacteri 49.2 17 0.00036 33.1 3.0 44 84-138 74-117 (150)
239 KOG0368 Acetyl-CoA carboxylase 49.0 53 0.0011 40.1 7.6 80 55-134 632-718 (2196)
240 PRK09016 quinolinate phosphori 48.7 18 0.00039 36.6 3.5 21 76-96 87-107 (296)
241 PRK07428 nicotinate-nucleotide 48.6 18 0.00039 36.5 3.5 23 74-96 72-94 (288)
242 PRK06978 nicotinate-nucleotide 48.5 18 0.0004 36.5 3.5 23 74-96 82-104 (294)
243 TIGR03327 AMP_phos AMP phospho 48.5 16 0.00034 39.7 3.2 32 66-97 440-471 (500)
244 COG3608 Predicted deacylase [G 48.5 31 0.00066 35.5 5.1 35 101-136 256-290 (331)
245 TIGR02643 T_phosphoryl thymidi 48.5 15 0.00032 39.2 3.0 29 69-97 375-403 (437)
246 PRK06078 pyrimidine-nucleoside 48.2 15 0.00032 39.3 2.9 30 70-99 372-401 (434)
247 PLN02716 nicotinate-nucleotide 47.9 19 0.00041 36.7 3.5 23 74-96 78-100 (308)
248 TIGR02644 Y_phosphoryl pyrimid 47.6 16 0.00034 38.7 3.0 28 70-97 370-397 (405)
249 PLN02744 dihydrolipoyllysine-r 47.6 19 0.00042 39.5 3.8 29 108-136 125-153 (539)
250 PF02749 QRPTase_N: Quinolinat 47.5 61 0.0013 26.3 5.9 41 99-139 17-73 (88)
251 cd01573 modD_like ModD; Quinol 47.3 20 0.00042 35.9 3.5 23 74-96 56-78 (272)
252 KOG0557 Dihydrolipoamide acety 47.3 16 0.00034 38.9 2.9 31 108-138 51-81 (470)
253 cd01568 QPRTase_NadC Quinolina 47.2 19 0.00042 35.8 3.5 24 73-96 56-79 (269)
254 PRK05848 nicotinate-nucleotide 47.0 20 0.00043 35.9 3.5 21 76-96 60-80 (273)
255 COG0213 DeoA Thymidine phospho 46.9 42 0.0009 35.5 5.9 47 95-141 330-408 (435)
256 PRK07896 nicotinate-nucleotide 46.6 20 0.00044 36.2 3.5 22 75-96 77-98 (289)
257 PRK06106 nicotinate-nucleotide 46.5 21 0.00044 36.0 3.5 23 74-96 70-92 (281)
258 PF13375 RnfC_N: RnfC Barrel s 46.4 30 0.00064 29.3 4.0 51 82-133 11-62 (101)
259 cd01134 V_A-ATPase_A V/A-type 44.6 54 0.0012 34.2 6.2 55 79-135 54-111 (369)
260 PRK08385 nicotinate-nucleotide 43.7 24 0.00052 35.4 3.5 22 75-96 59-80 (278)
261 COG4072 Uncharacterized protei 43.7 46 0.001 29.6 4.7 31 106-136 96-126 (161)
262 TIGR00078 nadC nicotinate-nucl 43.0 25 0.00055 35.0 3.5 21 76-96 56-76 (265)
263 TIGR01334 modD putative molybd 42.9 25 0.00054 35.3 3.5 23 74-96 60-82 (277)
264 CHL00117 rpoC2 RNA polymerase 42.9 53 0.0011 40.1 6.7 40 77-116 405-452 (1364)
265 PRK12467 peptide synthase; Pro 42.5 3.3E+02 0.0071 37.7 14.6 27 446-472 177-203 (3956)
266 PF06898 YqfD: Putative stage 41.9 31 0.00067 36.3 4.2 17 78-94 210-226 (385)
267 TIGR01042 V-ATPase_V1_A V-type 41.1 58 0.0012 36.1 6.1 54 79-134 123-179 (591)
268 TIGR02876 spore_yqfD sporulati 40.5 51 0.0011 34.6 5.5 54 72-131 163-223 (382)
269 PRK04192 V-type ATP synthase s 39.3 62 0.0013 35.9 6.0 56 79-136 123-181 (586)
270 PRK05691 peptide synthase; Val 39.1 5.4E+02 0.012 36.1 15.9 27 445-471 802-828 (4334)
271 TIGR02388 rpoC2_cyan DNA-direc 38.9 1E+02 0.0022 37.2 8.1 38 77-114 404-448 (1227)
272 PRK10871 nlpD lipoprotein NlpD 37.2 96 0.0021 31.8 6.7 24 113-136 270-293 (319)
273 TIGR02876 spore_yqfD sporulati 35.6 46 0.001 35.0 4.3 19 77-95 206-224 (382)
274 PRK10871 nlpD lipoprotein NlpD 35.4 22 0.00047 36.4 1.7 21 77-97 271-291 (319)
275 PF05896 NQRA: Na(+)-transloca 34.0 25 0.00054 34.8 1.9 29 103-131 31-59 (257)
276 TIGR00999 8a0102 Membrane Fusi 33.6 58 0.0013 31.6 4.4 31 60-96 90-120 (265)
277 PF01333 Apocytochr_F_C: Apocy 33.1 42 0.00091 29.0 2.8 51 71-130 9-61 (118)
278 COG0213 DeoA Thymidine phospho 32.5 38 0.00082 35.8 2.9 28 70-97 373-400 (435)
279 TIGR01043 ATP_syn_A_arch ATP s 32.2 91 0.002 34.6 5.9 54 79-134 120-176 (578)
280 COG1155 NtpA Archaeal/vacuolar 31.7 1E+02 0.0022 33.7 6.0 56 80-136 122-179 (588)
281 PRK06559 nicotinate-nucleotide 31.6 47 0.001 33.5 3.4 24 73-96 70-95 (290)
282 PTZ00403 phosphatidylserine de 30.8 43 0.00094 34.8 3.1 58 73-134 281-340 (353)
283 PRK08662 nicotinate phosphorib 30.4 48 0.001 34.4 3.3 23 73-97 70-92 (343)
284 PRK11637 AmiB activator; Provi 28.7 72 0.0016 33.9 4.4 25 112-136 378-402 (428)
285 PRK14698 V-type ATP synthase s 28.4 1.1E+02 0.0025 36.3 6.3 67 61-135 107-180 (1017)
286 PRK05691 peptide synthase; Val 28.1 7E+02 0.015 35.0 14.3 27 445-471 1855-1881(4334)
287 KOG1668 Elongation factor 1 be 27.4 35 0.00075 33.2 1.5 27 77-103 181-207 (231)
288 TIGR00164 PS_decarb_rel phosph 27.2 2.1E+02 0.0045 26.8 6.8 72 57-135 71-154 (189)
289 PRK09294 acyltransferase PapA5 26.5 52 0.0011 34.5 2.9 26 446-471 113-138 (416)
290 PRK11391 etp phosphotyrosine-p 26.0 61 0.0013 29.0 2.8 33 187-223 44-76 (144)
291 PRK07188 nicotinate phosphorib 25.6 72 0.0016 33.2 3.6 21 116-136 76-96 (352)
292 PRK10126 tyrosine phosphatase; 25.5 57 0.0012 29.2 2.5 33 187-223 44-76 (147)
293 PRK02259 aspartoacylase; Provi 25.5 32 0.00069 34.6 1.0 53 75-130 227-281 (288)
294 PRK09603 bifunctional DNA-dire 25.2 96 0.0021 40.5 5.1 52 78-129 2616-2720(2890)
295 COG3453 Uncharacterized protei 25.2 68 0.0015 28.2 2.8 36 189-226 47-82 (130)
296 PRK12316 peptide synthase; Pro 25.2 7E+02 0.015 35.7 13.6 28 445-472 176-203 (5163)
297 smart00226 LMWPc Low molecular 24.9 60 0.0013 28.4 2.5 32 187-223 41-72 (140)
298 PF11020 DUF2610: Domain of un 24.6 90 0.0019 25.2 3.1 30 291-320 51-80 (82)
299 PF03869 Arc: Arc-like DNA bin 24.3 2.2E+02 0.0047 20.7 4.9 48 278-327 2-49 (50)
300 cd06848 GCS_H Glycine cleavage 23.5 91 0.002 25.7 3.2 29 108-136 27-56 (96)
301 cd00516 PRTase_typeII Phosphor 23.0 83 0.0018 31.2 3.4 24 73-96 49-72 (281)
302 TIGR03443 alpha_am_amid L-amin 22.5 1.2E+03 0.026 28.6 13.9 68 302-383 42-110 (1389)
303 COG0157 NadC Nicotinate-nucleo 22.2 1E+02 0.0023 30.9 3.8 41 98-138 33-91 (280)
304 PRK05305 phosphatidylserine de 21.8 2.2E+02 0.0048 27.1 5.9 63 72-135 99-174 (206)
305 COG1725 Predicted transcriptio 21.5 37 0.00081 29.9 0.5 20 188-207 34-53 (125)
306 PF07687 M20_dimer: Peptidase 21.3 79 0.0017 25.9 2.5 28 446-473 79-106 (111)
307 cd01571 NAPRTase_B Nicotinate 21.1 95 0.0021 31.5 3.4 19 117-135 58-76 (302)
308 PRK02597 rpoC2 DNA-directed RN 20.4 1.7E+02 0.0037 35.7 5.7 22 78-99 952-973 (1331)
309 COG4325 Predicted membrane pro 20.4 1.2E+02 0.0026 31.8 3.9 37 101-137 229-283 (464)
No 1
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.8e-86 Score=689.51 Aligned_cols=395 Identities=32% Similarity=0.477 Sum_probs=331.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|++|++.+++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA 82 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999765432
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchh
Q 011684 139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE 218 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 218 (479)
.. . ... +...++ .. ..+.+.+. .+. .....+++||+||+||+||||||++|+|||++|||+++
T Consensus 83 ~~---~-~~~-----~~~~~~-~~--~~~~~~~~---~~~--~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 145 (407)
T PRK05704 83 GA---A-AAA-----AAAAAA-AA--AAPAQAQA---AAA--AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKE 145 (407)
T ss_pred cc---c-CCC-----CCCCCC-CC--CCCCCCCC---Ccc--CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHH
Confidence 11 0 000 000000 00 00000000 000 01123679999999999999999999999999999999
Q ss_pred hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHH
Q 011684 219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297 (479)
Q Consensus 219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~ 297 (479)
||++|+....... + +++.+... ..+........+.+|++++||+|+++|.+| +++|||+++.++|+|+|+++
T Consensus 146 DV~~~~~~~~~~~----~-~~~~~~~~--~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~ 218 (407)
T PRK05704 146 DVLAALAAAAAAP----A-APAAAAPA--AAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDL 218 (407)
T ss_pred HHHHHhhcccccC----C-CCCCCCCc--CCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHH
Confidence 9999974321110 0 00000000 000000011235689999999999999999 89999999999999999999
Q ss_pred HHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684 298 YEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370 (479)
Q Consensus 298 ~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei 370 (479)
|+++++ .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||++++++++.||
T Consensus 219 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eI 297 (407)
T PRK05704 219 RKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASID-GDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEI 297 (407)
T ss_pred HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEc-CCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHH
Confidence 999874 1699999999999999999999999996 45899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA 450 (479)
Q Consensus 371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~ 450 (479)
+++++++.+++|+|+|+++|+.||||+|||+|+||+.+|+||+|+||+|||++|++.++++++ ||+++++++|+|+|+|
T Consensus 298 a~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~ 376 (407)
T PRK05704 298 EKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSY 376 (407)
T ss_pred HHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 451 DHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
|||+|||+++|+||++|+++||+|+.||+
T Consensus 377 DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 405 (407)
T PRK05704 377 DHRIIDGKEAVGFLVTIKELLEDPERLLL 405 (407)
T ss_pred chhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence 99999999999999999999999998764
No 2
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=6.2e-86 Score=683.98 Aligned_cols=393 Identities=29% Similarity=0.473 Sum_probs=330.7
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
++|+||+||++|++|+|++|+|++||.|++||+||+||+||+++||+||.+|+|.++++++|+.|++|++|++|++.++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999754321
Q ss_pred HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchh
Q 011684 139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE 218 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 218 (479)
. .. .. + ++ .++.+.....+ . . +.+...++++.+||+||+||+|+||||++|+|||++|||+++
T Consensus 81 ~---~~--~~-~---~~-~~~~~~~~~~~--~-~----~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~ 143 (403)
T TIGR01347 81 T---AA--PP-A---KS-GEEKEETPAAS--A-A----AAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKE 143 (403)
T ss_pred c---cc--cc-c---cc-cCCCCCCCCCC--C-C----CCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHH
Confidence 0 00 00 0 00 00000000000 0 0 000111235689999999999999999999999999999999
Q ss_pred hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHH
Q 011684 219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297 (479)
Q Consensus 219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~ 297 (479)
||++|+....... + +++. .+.+. +.. .....+.+|+++|||+|+++|.+| +++|||++..++|+|+|+++
T Consensus 144 DV~~~~~~~~~~~----~-~~~~--~~~~~-~~~-~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~ 214 (403)
T TIGR01347 144 DIIKKTEAPASAQ----A-PAPA--AAAKA-PAN-FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL 214 (403)
T ss_pred HHHHhhhcccccC----C-CCCC--cccCC-ccc-cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence 9999975311100 0 0000 00000 000 011245689999999999999999 79999999999999999999
Q ss_pred HHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684 298 YEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370 (479)
Q Consensus 298 ~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei 370 (479)
|+++++ .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||++++++++.+|
T Consensus 215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eI 293 (403)
T TIGR01347 215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEID-GDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADI 293 (403)
T ss_pred HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEc-CCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHH
Confidence 998874 1699999999999999999999999996 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA 450 (479)
Q Consensus 371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~ 450 (479)
+++++++.+++|+|+|+++|++||||+|||+|+||+.+|+||+|+||+|||++|+++++|++. ||++++|++|+|+|+|
T Consensus 294 a~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~ 372 (403)
T TIGR01347 294 EKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSY 372 (403)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 451 DHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
|||+|||+++|+||++|+++||+|+.||+
T Consensus 373 DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 401 (403)
T TIGR01347 373 DHRLIDGKEAVTFLVTIKELLEDPRRLLL 401 (403)
T ss_pred cchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence 99999999999999999999999998764
No 3
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.3e-85 Score=694.35 Aligned_cols=421 Identities=35% Similarity=0.524 Sum_probs=338.9
Q ss_pred ccccceeeec---ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-
Q 011684 46 RSRRRIFIVQ---SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE- 121 (479)
Q Consensus 46 ~~~~~~~~~~---~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~- 121 (479)
.+..|++... ..+++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+++.+|+|.+|++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~ 176 (539)
T PLN02744 97 MQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAK 176 (539)
T ss_pred ccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCc
Confidence 3344555444 345999999999999999999999999999999999999999999999999999999999999996
Q ss_pred eecCCCeEEEEecChhhHHHHHhhhhcc--CCCCCC--CCCCCCCCC--CCCCCCCCC-CCCC-CCCCCCCccccChhHH
Q 011684 122 SAPVGAAIGILAETEAEVAQAKAKAASA--GAAAPA--SHPVTSTPV--PAVSPPEPK-KVAE-SAPSGPRKTVATPYAK 193 (479)
Q Consensus 122 ~v~~G~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~asP~aR 193 (479)
.|++|++|+++.+++++........... ....++ +.++.+... ..+++.+.+ ...+ .+...+.++++||+||
T Consensus 177 ~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aR 256 (539)
T PLN02744 177 EIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLAR 256 (539)
T ss_pred ccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhH
Confidence 7999999999865443321111000000 000000 000000000 000000000 0000 0011223578999999
Q ss_pred HHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHH
Q 011684 194 KLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKN 273 (479)
Q Consensus 194 ~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~ 273 (479)
|||+|+||||+.|+|||++|||+++||++|+....... +.+. .. +. . .+....+++|+++|||.|+++
T Consensus 257 rLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~------~~~~--~~--~~-~-~~~~~~~~vpls~~Rk~IA~~ 324 (539)
T PLN02744 257 KLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGA------TAPP--ST--DS-K-APALDYTDIPNTQIRKVTASR 324 (539)
T ss_pred HHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhcccccc------CCCC--Cc--cc-C-CCCCccccccchhHHHHHHHH
Confidence 99999999999999999999999999999975311100 0010 00 00 0 001124568999999999999
Q ss_pred hhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEE
Q 011684 274 MIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345 (479)
Q Consensus 274 m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~ 345 (479)
|.+| +++|||+++.++|+|+|+++|+++++ .++||++||+||+++||++||+||++|+ ++.+++|+++|||
T Consensus 325 m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~-~~~i~~~~~vnIg 403 (539)
T PLN02744 325 LLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWT-DDYIRQYHNVNIN 403 (539)
T ss_pred HHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeec-cCcEEEeCCcceE
Confidence 9999 89999999999999999999999873 2799999999999999999999999996 4589999999999
Q ss_pred EEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecC-CCCccceeecCCCCCceEEEeC
Q 011684 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG-MFGVDRFDAILPPGQGAIMAVG 424 (479)
Q Consensus 346 ~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg-~~G~~~ftpii~~~~~ail~vG 424 (479)
+||++++||++|||++++++++.||+++++++.+++|+|+|+++|+.||||||||+| +||+.+|+||||+||+|||++|
T Consensus 404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG 483 (539)
T PLN02744 404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG 483 (539)
T ss_pred EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred cceEEEEEc-CCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 425 ASKPTVVAD-ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 425 ~~~~~~v~~-~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
++++++++. .+|+++++++|+|+|+||||||||+++|+||++|+++||+|+.||+
T Consensus 484 ~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 484 SAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred cceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999873 4789999999999999999999999999999999999999998875
No 4
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=3.7e-85 Score=661.51 Aligned_cols=421 Identities=43% Similarity=0.624 Sum_probs=355.5
Q ss_pred cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC-CeecCCCeEEEEe
Q 011684 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILA 133 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g-~~v~~G~~l~~i~ 133 (479)
.+.++.|.||.|+.+|+||.|++|.++|||++++||+||||||||++|+++++.+|+|.+|+++|| ..|++|.+||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred cChhhHHHHHhhhhcc-CCCCCCCCCCCCCCC--C---CCCCCCCC-CCCCCCCCCCCccccChhHHHHHhhcCCCcccc
Q 011684 134 ETEAEVAQAKAKAASA-GAAAPASHPVTSTPV--P---AVSPPEPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSV 206 (479)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v 206 (479)
+.+++++..+....+. +.+.....+++++++ . .|.+.+.+ .+.+.....++++++||+||+||.|+|+|+++|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 9999998777654421 111111111111111 1 11110000 011111222568999999999999999999999
Q ss_pred ccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEE
Q 011684 207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV 285 (479)
Q Consensus 207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~ 285 (479)
.||||+|||++.||++|++..........+..++. .+ ++......++++++|+++||+.|+++|.+| ++|||||+
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~--~~--~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yv 270 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPP--PA--PAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYV 270 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCCCccCCC--cC--ccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEE
Confidence 99999999999999999886432110000000010 00 011112234589999999999999999999 99999999
Q ss_pred EEEEeccHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEec
Q 011684 286 GYPIITDALDALYEKVK----PKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD 361 (479)
Q Consensus 286 ~~~iDvt~l~~~~~~~k----~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~ 361 (479)
+++++++.|+++|++++ ..++|+++|++||++.||.++|+.|++|.+++.|.++++|||+++|.+++||++|+|+|
T Consensus 271 t~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n 350 (470)
T KOG0557|consen 271 TVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN 350 (470)
T ss_pred eeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence 99999999999999999 45899999999999999999999999998767899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEE--cCCCeEE
Q 011684 362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVA--DADGFFG 439 (479)
Q Consensus 362 a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~--~~~G~i~ 439 (479)
++.+.+.+|.++++++..++|.++|.+++++||||+||||||||++.|+.|+||||.|||++|...+..|. +.++++.
T Consensus 351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~ 430 (470)
T KOG0557|consen 351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS 430 (470)
T ss_pred cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885 5567788
Q ss_pred EEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 440 VKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 440 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
....|+|+|++|||++||+.++|||+.|+++||||+.|||
T Consensus 431 ~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 431 VINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 9999999999999999999999999999999999999886
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=3.4e-84 Score=700.94 Aligned_cols=420 Identities=30% Similarity=0.420 Sum_probs=331.0
Q ss_pred eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..++|+||+||++|++|+|++|+|++||.|++||.||+||+||++++|+||++|+|.+|++++|+.|++|++|+.|++.+
T Consensus 134 ~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 213 (590)
T TIGR02927 134 AATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG 213 (590)
T ss_pred CceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred hhHHHHHhhhhcc-CCC-CCCCCCCCCCC-----CC--CCC--CCCCC-C-CCCC-CCCCCCccccChhHHHHHhhcCCC
Q 011684 137 AEVAQAKAKAASA-GAA-APASHPVTSTP-----VP--AVS--PPEPK-K-VAES-APSGPRKTVATPYAKKLLKQHKVD 202 (479)
Q Consensus 137 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-----~~--~~~--~~~~~-~-~~~~-~~~~~~~~~asP~aR~lA~e~gid 202 (479)
++........... +.. +++...+.... .. .+. +.... . ..+. ....+.++++||+|||||+|+|||
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvd 293 (590)
T TIGR02927 214 AAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGID 293 (590)
T ss_pred CccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCC
Confidence 3321100000000 000 00000000000 00 000 00000 0 0000 011224678999999999999999
Q ss_pred ccccccCCCCCccchhhHHHhhccCCCCCCCCCC-CCCCCCCCC-CCCCCCCCC--CCCCceeccchhhHHHHHHhhhc-
Q 011684 203 INSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSA-APAALPKPA-PAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES- 277 (479)
Q Consensus 203 l~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~--~~~~~~~p~s~~r~~ia~~m~~S- 277 (479)
|++|.|||++|||+++||++|+.........+.+ ++...+..+ .......+. ...++.+||++|||.|+++|++|
T Consensus 294 l~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~ 373 (590)
T TIGR02927 294 LNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL 373 (590)
T ss_pred HHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence 9999999999999999999997532110000000 000000000 000000000 01245789999999999999999
Q ss_pred cCccEEEEEEEEeccHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEE
Q 011684 278 LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVA 349 (479)
Q Consensus 278 ~~vP~~~~~~~iDvt~l~~~~~~~k~~-------~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~ 349 (479)
+++||||++.++|+|+|++||+++|+. ++||++||+||+++||++||.||++|++ +++|++|+++||||||+
T Consensus 374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~ 453 (590)
T TIGR02927 374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD 453 (590)
T ss_pred ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence 789999999999999999999999741 6899999999999999999999999964 45899999999999999
Q ss_pred eCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEE
Q 011684 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT 429 (479)
Q Consensus 350 ~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~ 429 (479)
+++||++|||++++++++.+|++++++|.+++|+|+|+++|++||||||||||+||+++|+||||+||+|||++|+++++
T Consensus 454 t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~ 533 (590)
T TIGR02927 454 TDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKR 533 (590)
T ss_pred CCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc--CCC--eEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcc
Q 011684 430 VVAD--ADG--FFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPES 476 (479)
Q Consensus 430 ~v~~--~~G--~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ 476 (479)
|++. .+| .+.+|++|+|||+||||||||+++|+||++|+++||||..
T Consensus 534 pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 534 PRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred EEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 9884 234 3899999999999999999999999999999999999864
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.8e-83 Score=672.66 Aligned_cols=413 Identities=37% Similarity=0.598 Sum_probs=331.2
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCe-ecCCCeEEEEecChhh
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES-APVGAAIGILAETEAE 138 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~-v~~G~~l~~i~~~~~~ 138 (479)
+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+. |++|++|++|++.+++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 378999999999999999999999999999999999999999999999999999999999999 9999999999764432
Q ss_pred HHHHHhh-hhccCCCC--CCCCCCC-CCCCCCCCCCCCCCC-CC---CC---CCCCCccccChhHHHHHhhcCCCccccc
Q 011684 139 VAQAKAK-AASAGAAA--PASHPVT-STPVPAVSPPEPKKV-AE---SA---PSGPRKTVATPYAKKLLKQHKVDINSVV 207 (479)
Q Consensus 139 ~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~---~~---~~~~~~~~asP~aR~lA~e~gidl~~v~ 207 (479)
....... ..+....+ +.+..+. +.....+...+.... .+ .. ...+.++++||+||+||+||||||++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 2100000 00000000 0000000 000000000000000 00 00 1112357899999999999999999999
Q ss_pred cCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCceeccchhhHHHHHHhhhc-cCccEEEE
Q 011684 208 GTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP-LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV 285 (479)
Q Consensus 208 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~ 285 (479)
|||++|||+++||++|+....... +. ++..+ .+.......+ .....+.+||++|||+|+++|++| +++|||++
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~ 235 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSPASA--NF--QAAAT-TPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYV 235 (435)
T ss_pred CCCCCCceeHHHHHHHHhcccccC--CC--ccccc-cccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEE
Confidence 999999999999999975421110 00 00000 0000000000 111245789999999999999999 89999999
Q ss_pred EEEEeccHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEe
Q 011684 286 GYPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQ 360 (479)
Q Consensus 286 ~~~iDvt~l~~~~~~~k~-----~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~ 360 (479)
..++|+|+|+++|+++++ .++||++||+||+++||++||.||++|++ ++|++|+++|||+||++++||++|||+
T Consensus 236 ~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~-~~i~~~~~vnigvAv~~~~GL~vPvi~ 314 (435)
T TIGR01349 236 SIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTD-NFIRRYKNVDISVAVATPDGLITPIVR 314 (435)
T ss_pred EEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeC-CeEEEeCCeeEEEEEECCCCeEECCCC
Confidence 999999999999999874 37999999999999999999999999964 689999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCe---
Q 011684 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGF--- 437 (479)
Q Consensus 361 ~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~--- 437 (479)
+++++++.||+++++++.+++|+|+|.++|+.||||||||+|+||+++|+||+|+||++||++|++.++++++ +|+
T Consensus 315 ~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~ 393 (435)
T TIGR01349 315 NADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKG 393 (435)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 455
Q ss_pred EEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 438 FGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 438 i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
++++++|+|+|+|||||+||+++++||++|+++||+|+.||+
T Consensus 394 i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 394 FAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999999998875
No 7
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=2.1e-83 Score=668.68 Aligned_cols=403 Identities=27% Similarity=0.390 Sum_probs=329.4
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhhHH
Q 011684 61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVA 140 (479)
Q Consensus 61 i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~~ 140 (479)
++||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+.+|+|.++++++|+.|.+|++|+.|..++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999965433211
Q ss_pred HHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccchhhH
Q 011684 141 QAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV 220 (479)
. ..... .++..++ ...+ .+.. ... .....+++||+||+||+||||||++|+|||++|||+++||
T Consensus 81 ~--~~~~~----~~~~~~~----~~~~--~~~~--~~~--~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV 144 (416)
T PLN02528 81 R--SDSLL----LPTDSSN----IVSL--AESD--ERG--SNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDV 144 (416)
T ss_pred c--ccCCC----CCCCCcc----CCCC--CCCC--ccc--cccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHH
Confidence 0 00000 0000000 0000 0000 000 0112357999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHH
Q 011684 221 EKAAGIAPSKSVAPSAAPAALPKPAPAA-APAAPLLP--GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDAL 297 (479)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~ 297 (479)
++|+............+.+..+...... ....+... ..+.+|++++||+|+++|.+|+++|||++..+||+|+|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~ 224 (416)
T PLN02528 145 LKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVEL 224 (416)
T ss_pred HHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHH
Confidence 9997532110000000000000000000 00000001 23568999999999999999999999999999999999999
Q ss_pred HHHhCC------CCCCHHHHHHHHHHHHHhhCccccccccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHH
Q 011684 298 YEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370 (479)
Q Consensus 298 ~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei 370 (479)
|+++++ .++||++||+||+++||.+||+||++|+++ +.+++|+++|||+||++++||++|||++++++++.+|
T Consensus 225 r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI 304 (416)
T PLN02528 225 KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEI 304 (416)
T ss_pred HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHH
Confidence 999864 169999999999999999999999999744 3799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEe
Q 011684 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTA 450 (479)
Q Consensus 371 ~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~ 450 (479)
+++++++.+++|+|+|+++|+.||||+|||+|+||+.+|+||+|+||+|||++|+++++|++.+||++.+|++|+|+|+|
T Consensus 305 ~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~ 384 (416)
T PLN02528 305 TKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGA 384 (416)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEec
Confidence 99999999999999999999999999999999999999999999999999999999999998657899999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 451 DHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 451 DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
|||||||+++++||++|+++||+|+.||+
T Consensus 385 DHRviDGa~aa~Fl~~lk~~le~P~~lll 413 (416)
T PLN02528 385 DHRVLDGATVARFCNEWKSYVEKPELLML 413 (416)
T ss_pred cchhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999999999998875
No 8
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=2.9e-83 Score=688.79 Aligned_cols=414 Identities=27% Similarity=0.384 Sum_probs=332.8
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
..+|+||+||+ |+||+|++|+|++||.|++||.||+||+||++++|+||++|+|.++++++|+.|++|++|+.|.+.++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999976443
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--CCCCCCCcc-ccChhHHHHHhhcCCCccccccCCC
Q 011684 138 EVAQAKAKAASAGAAAPASHPVTSTP---VPAVSPPEPKKVAE--SAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGP 211 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~ 211 (479)
+...... ...+ .+....+.+.. ...+.+........ .....+.++ ++||+||+||+||||||+.|.|||+
T Consensus 195 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 270 (546)
T TIGR01348 195 TPATAPA--PASA--QPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGI 270 (546)
T ss_pred CcccccC--cccc--cccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCC
Confidence 2110000 0000 00000000000 00000000000000 000012345 6999999999999999999999999
Q ss_pred CCccchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEE
Q 011684 212 FGRITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPAAAPA--APLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGY 287 (479)
Q Consensus 212 ~GrI~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~ 287 (479)
+|||+++||++|+..... .+..+. ++..+.....+... ......++.+||++|||+|+++|.+| +++|||+++.
T Consensus 271 ~GrI~~~DV~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~ 348 (546)
T TIGR01348 271 KGRILREDVQRFVKEPSVRAQAAAA--SAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFD 348 (546)
T ss_pred CCeEeHHHHHHHhhccccccCcccc--cccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEE
Confidence 999999999999753211 100000 00000000000000 00011235789999999999999999 8999999999
Q ss_pred EEeccHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEEe
Q 011684 288 PIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQ 360 (479)
Q Consensus 288 ~iDvt~l~~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi~ 360 (479)
++|+|+|+++|+++|+. ++||++||+||+++||++||.||++|++ ++.+++|+++|||+||++++||++|||+
T Consensus 349 evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~ 428 (546)
T TIGR01348 349 KADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIK 428 (546)
T ss_pred EEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcC
Confidence 99999999999999852 6999999999999999999999999974 3579999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEE
Q 011684 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGV 440 (479)
Q Consensus 361 ~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~ 440 (479)
+++++++.+|+++++++.+++|+|+|+++|+.||||||||+|+||+++|+||+|+||++||++|+++++|+++ +|++++
T Consensus 429 ~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~ 507 (546)
T TIGR01348 429 DVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEP 507 (546)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 689999
Q ss_pred EEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 441 KSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 441 r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+++|+|+|+|||||+||+++++||++|+++||+|+.||+
T Consensus 508 ~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 508 RLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred EEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999999998875
No 9
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2.4e-80 Score=677.62 Aligned_cols=412 Identities=26% Similarity=0.354 Sum_probs=331.3
Q ss_pred eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+.++|+||+|| |+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.+|++++|+.|++|++|+.|.+.+
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG 282 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence 56899999999 9999999999999999999999999999999999999999999999999999999999999997544
Q ss_pred hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684 137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV-A-ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR 214 (479)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 214 (479)
++... .. .... ++...+.+.....+.+.+.+.. . ......+.++++||+|||||+||||||++|+|||++||
T Consensus 283 ~~~~~--~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 356 (633)
T PRK11854 283 AAPAA--AP-AKQE---AAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGR 356 (633)
T ss_pred CCccc--cc-cccC---CCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCe
Confidence 32110 00 0000 0000000000000000000000 0 00011123578999999999999999999999999999
Q ss_pred cchhhHHHhhccCCC-CCCCCCCCCCCCCCCCC--CCCCCCC--CCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEE
Q 011684 215 ITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAP--AAAPAAP--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYP 288 (479)
Q Consensus 215 I~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~ 288 (479)
|+++||++|+..... ....+.+ + +.+...+ .+....+ .....+++||++|||.|+++|.+| +++|||+++.+
T Consensus 357 I~~~DV~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~e 434 (633)
T PRK11854 357 ILKEDVQAYVKDAVKRAEAAPAA-A-AAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDK 434 (633)
T ss_pred EeHHHHHHHhhccccccccCCcc-c-ccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 999999999753211 0000000 0 0000000 0000000 011235689999999999999999 79999999999
Q ss_pred EeccHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEE
Q 011684 289 IITDALDALYEKVKP--------KGVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVL 359 (479)
Q Consensus 289 iDvt~l~~~~~~~k~--------~~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi 359 (479)
+|+|+|+++|++++. .++|+++||+||+++||++||+||++|++ ++++++|+++|+|+||++++||++|||
T Consensus 435 vD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi 514 (633)
T PRK11854 435 ADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVF 514 (633)
T ss_pred EEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeE
Confidence 999999999997662 26899999999999999999999999963 568999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEE
Q 011684 360 QDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFG 439 (479)
Q Consensus 360 ~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~ 439 (479)
+++++++|.+|+++++++.+++|+++|.++++.+|||+|||+||||+++|+||+|+||+|||++|++.++|+++ +|.++
T Consensus 515 ~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~ 593 (633)
T PRK11854 515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFA 593 (633)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 68899
Q ss_pred EEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 440 VKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 440 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+|++|+|+|+||||++||+|+|+||++|+++||+|+.|||
T Consensus 594 ~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 594 PRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999999999999999999999998875
No 10
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.7e-79 Score=642.73 Aligned_cols=403 Identities=40% Similarity=0.606 Sum_probs=332.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh-
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA- 137 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~- 137 (479)
.+++||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999976553
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCccccChhHHHHHhhcCCCccccccCCCCCccc
Q 011684 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA-PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT 216 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~ 216 (479)
+.+.... . ....+.. .+.. ...+.....+...... ...+.+.++||+||+||+||||||++|+|||++|||+
T Consensus 83 ~~~~~~~---~-~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~ 155 (411)
T PRK11856 83 EAAAAAE---A-APEAPAP-EPAP--AAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRIT 155 (411)
T ss_pred ccccccC---C-CCCCCCC-CCCC--CCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEE
Confidence 2111100 0 0000000 0000 0000000000000000 0111234799999999999999999999999999999
Q ss_pred hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHH
Q 011684 217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD 295 (479)
Q Consensus 217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~ 295 (479)
++||++|+....... . +... .. ...........+.+|++++||.|+++|.+| +++|||+++.+||+|+|+
T Consensus 156 ~~Dv~~~~~~~~~~~----~-~~~~--~~--~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~ 226 (411)
T PRK11856 156 KEDVEAAAAAAAPAA----A-AAAA--AA--AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALL 226 (411)
T ss_pred HHHHHHHHhcccccC----C-CCCC--CC--CCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHH
Confidence 999999975321110 0 0000 00 000000011356789999999999999999 899999999999999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHH
Q 011684 296 ALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQK 373 (479)
Q Consensus 296 ~~~~~~k~~--~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~ 373 (479)
++++++++. ++||+++|+||+++||++||+||++|.+ +++++|++||+|+||++++||++|+|+++++++|.+|+++
T Consensus 227 ~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~ 305 (411)
T PRK11856 227 ALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDD-DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELARE 305 (411)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEeC-CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHH
Confidence 999998754 8999999999999999999999999964 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEeccc
Q 011684 374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHR 453 (479)
Q Consensus 374 ~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHR 453 (479)
++++++++|+++|.++++.+|||+|||+||+|...|+|++++||++||+||++++++++. +|+++++.+|+|+|+||||
T Consensus 306 ~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~DHR 384 (411)
T PRK11856 306 IKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDHR 384 (411)
T ss_pred HHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEeehh
Confidence 999999999999999999999999999999999999999999999999999999999986 7999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhcCCccccC
Q 011684 454 IIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 454 vvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+|||+|+++||+.|+++||+|+.||+
T Consensus 385 viDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 385 VIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred hcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 99999999999999999999998875
No 11
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.6e-79 Score=662.47 Aligned_cols=415 Identities=31% Similarity=0.472 Sum_probs=330.8
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
..+|+||+||+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~ 197 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAA 197 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999999999999976533
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcc-ccChhHHHHHhhcCCCccccccCCCCCcc
Q 011684 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE-PKKVAESAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGPFGRI 215 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI 215 (479)
+.... .... . ..++.. ..+.....+.... .....+......++. ++||+|||||+||||||++|.|||++|||
T Consensus 198 ~~~~~--~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI 272 (547)
T PRK11855 198 APAAA--AAPA-A-AAPAAA-AAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRI 272 (547)
T ss_pred ccccc--cCCC-C-CCCccc-cccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcE
Confidence 21000 0000 0 000000 0000000000000 000000001112244 79999999999999999999999999999
Q ss_pred chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEe
Q 011684 216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA--P--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPII 290 (479)
Q Consensus 216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iD 290 (479)
+++||++|+.........+...+...+....+..... . .....+.+||+++||.|+++|++| +++|||+++.+||
T Consensus 273 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd 352 (547)
T PRK11855 273 TKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD 352 (547)
T ss_pred eHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEE
Confidence 9999999975321110000000000000000000000 0 001245689999999999999999 7999999999999
Q ss_pred ccHHHHHHHHhCC----C--CCCHHHHHHHHHHHHHhhCccccccccC-CCeeEEcCcccEEEEEEeCCCeEEeEEecCC
Q 011684 291 TDALDALYEKVKP----K--GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQDAD 363 (479)
Q Consensus 291 vt~l~~~~~~~k~----~--~~s~~~~likAva~Al~~~P~~n~~~~~-~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~ 363 (479)
+|+|+++|+++++ . ++|||++|+||+++||++||+||++|++ ++.+++|++||+|+||++++||++|+|++++
T Consensus 353 ~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~ 432 (547)
T PRK11855 353 ITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVD 432 (547)
T ss_pred ChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCc
Confidence 9999999998864 2 6899999999999999999999999974 5689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEE
Q 011684 364 KLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSK 443 (479)
Q Consensus 364 ~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~ 443 (479)
++++.+|+++++++.+++|+++|.++++.+|||+|||+||||+++|+|++|+||+|||++|++.++|++. +|.+.+|.+
T Consensus 433 ~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~-~~~~~~r~~ 511 (547)
T PRK11855 433 KKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWD-GKEFVPRLM 511 (547)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeee-CCEEEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764 788999999
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
|+|+|+||||+|||+|+++||++|+++||+|+.||+
T Consensus 512 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 512 LPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred EEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999998875
No 12
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.1e-79 Score=635.95 Aligned_cols=394 Identities=38% Similarity=0.572 Sum_probs=334.9
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||.+|+|.+|++++|++|++|++|++|.+.++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccch
Q 011684 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~ 217 (479)
+.. +.. .++..+ ... .++ ..+ .+.+....++..+||++|+||+|+||||.++.|||++|||++
T Consensus 82 ~~~-----a~~-----~~~~~~--~~~-~~~--~~~--~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~ 144 (404)
T COG0508 82 DAP-----AAA-----EAPPEP--AAA-APA--SAP--ATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITK 144 (404)
T ss_pred ccc-----ccC-----cccCCc--ccc-CcC--ccc--CccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceec
Confidence 420 000 000000 000 000 000 000000114679999999999999999999999999999999
Q ss_pred hhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHH
Q 011684 218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296 (479)
Q Consensus 218 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~ 296 (479)
+|+++++...... + ..+. .+. +........++++|++++||.|+++|.+| .++||++...++|++.|.+
T Consensus 145 ~d~~~~~~~~~~~-----~-~~~~--~~~--~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~ 214 (404)
T COG0508 145 KDVEAAVAEKAAA-----A-AAPA--PAA--AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMA 214 (404)
T ss_pred cchhhhccccccc-----c-cccc--ccc--CCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHH
Confidence 9999998753110 0 0000 000 00001223467899999999999999999 8999999999999999999
Q ss_pred HHHHhCC------CCCCHHHHHHHHHHHHHhhCccccccccCCC-eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHH
Q 011684 297 LYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDGK-SFTYNANINIAVAVAINGGLITPVLQDADKLDLYL 369 (479)
Q Consensus 297 ~~~~~k~------~~~s~~~~likAva~Al~~~P~~n~~~~~~~-~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~e 369 (479)
+|++++. .+++|++|++||++.||+++|.+|++++.++ .+++++++|+|++|++++||++|||++++++++.+
T Consensus 215 lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~ 294 (404)
T COG0508 215 LRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE 294 (404)
T ss_pred HHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence 9999875 2789999999999999999999997775322 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEE
Q 011684 370 LSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVT 449 (479)
Q Consensus 370 i~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt 449 (479)
|.+++.++..++|+|+|++++++|+||+|||+|+||...|+||+|+||++||++|++.++++|. +|+++++++|+|+|+
T Consensus 295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls 373 (404)
T COG0508 295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLS 373 (404)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999996 569999999999999
Q ss_pred ecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 450 ADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 450 ~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
||||++||+++++||.+++++||||..|++
T Consensus 374 ~DHRviDGa~aa~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 374 YDHRVIDGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred ccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence 999999999999999999999999998874
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=8.7e-76 Score=609.71 Aligned_cols=366 Identities=25% Similarity=0.402 Sum_probs=301.3
Q ss_pred cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
.....+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.+|++++||.|++|++|+.|++
T Consensus 88 ~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 88 SGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred cCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 33447999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ChhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684 135 TEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR 214 (479)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 214 (479)
.+++.+ .. . +....+. . ..+.+.+ +..+....++.++|++|+.+ .++|+.+.
T Consensus 168 ~~~~~~---~~--~-----~~~~~~~--~-~~~~~~~-----~~~~~~~~~v~asp~~r~~~----------~~~~~~~~ 219 (463)
T PLN02226 168 SEDAAS---QV--T-----PSQKIPE--T-TDPKPSP-----PAEDKQKPKVESAPVAEKPK----------APSSPPPP 219 (463)
T ss_pred CCcccc---cc--C-----ccCCCCC--C-CCCCCCC-----ccccccccCCCcchhhcccc----------CCCCCCCC
Confidence 432110 00 0 0000000 0 0000000 00001112456777776532 12232210
Q ss_pred cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccH
Q 011684 215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDA 293 (479)
Q Consensus 215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~ 293 (479)
. . + .. .+ ........+.+|+++|||.|+++|.+| +++||||+..++|+|+
T Consensus 220 -----------~--~------~--~~----~~----~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~ 270 (463)
T PLN02226 220 -----------K--Q------S--AK----EP----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTN 270 (463)
T ss_pred -----------c--c------c--cc----Cc----ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHH
Confidence 0 0 0 00 00 000000135689999999999999999 7999999999999999
Q ss_pred HHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCC
Q 011684 294 LDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLD 366 (479)
Q Consensus 294 l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~s 366 (479)
|.++|+++++ .++||++||+||+++||++||+||++|+ ++.|++|+++|||+||++++||++|||+++++++
T Consensus 271 L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~s 349 (463)
T PLN02226 271 LMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID-GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMN 349 (463)
T ss_pred HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEc-CCEEEEeCcccEEEEEECCCCEEeccCCCcccCC
Confidence 9999999874 1689999999999999999999999996 4589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEE
Q 011684 367 LYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV 446 (479)
Q Consensus 367 l~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~l 446 (479)
+.||+++++++++++|+|+|+++|++||||||||+|+||+++|+||||+||++||++|+++++|++. ||++++|++|+|
T Consensus 350 l~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~l 428 (463)
T PLN02226 350 FAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYV 428 (463)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred EEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 447 NVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 447 slt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+|+||||+|||+++|+||++|+++||+|+.||+
T Consensus 429 sLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 429 ALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred eEecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 999999999999999999999999999998764
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.1e-74 Score=597.88 Aligned_cols=368 Identities=27% Similarity=0.426 Sum_probs=299.2
Q ss_pred cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
...+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|++|++
T Consensus 41 ~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 41 YFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred cccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcC
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ChhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCc
Q 011684 135 TEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR 214 (479)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 214 (479)
.+++.. .. .. + .....+.. ..+. +.. ...|.+|++++++++++..+...
T Consensus 121 ~~~~~~---~~-~~-~---~~~~~~~~---~~~~--~~~-------------~~~p~~~~~a~~~~~a~p~vr~~----- 169 (418)
T PTZ00144 121 GGAPPA---AA-PA-A---AAAAKAEK---TTPE--KPK-------------AAAPTPEPPAASKPTPPAAAKPP----- 169 (418)
T ss_pred CCcccc---cc-cc-c---cCCCCCcc---CCCC--CCC-------------CCCCccccccccccCCchhhhcc-----
Confidence 443110 00 00 0 00000000 0000 000 00133344444444444333100
Q ss_pred cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccH
Q 011684 215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDA 293 (479)
Q Consensus 215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~ 293 (479)
.. .+. +.+.+. .. + ......+.+|+++|||+|+++|.+| +++|||+++.++|+|+
T Consensus 170 ----------~~--~~~----~~~~~~--~~--~----~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~ 225 (418)
T PTZ00144 170 ----------EP--APA----AKPPPT--PV--A----RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSA 225 (418)
T ss_pred ----------cc--CCC----CCCCCC--Cc--c----ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechH
Confidence 00 000 000000 00 0 0000134589999999999999999 7999999999999999
Q ss_pred HHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCC
Q 011684 294 LDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLD 366 (479)
Q Consensus 294 l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~s 366 (479)
|.++|+++++ .++||++||+||+++||.+||+||++|+ ++++++|+++|||+||++++||++|||+++++++
T Consensus 226 l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~s 304 (418)
T PTZ00144 226 LMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYID-GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKS 304 (418)
T ss_pred HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEc-CCEEEEecCCCEEEEEECCCCEEEccCCCcccCC
Confidence 9999999874 1699999999999999999999999996 4589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEE
Q 011684 367 LYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV 446 (479)
Q Consensus 367 l~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~l 446 (479)
+.||+++++++.+++|+|+|.++|+.||||+|||+|++|+++|+||+|+||+|||++|+++++|+++ +|++++|++|+|
T Consensus 305 l~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~l 383 (418)
T PTZ00144 305 FAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYL 383 (418)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 789999999999
Q ss_pred EEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 447 NVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 447 slt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+|+||||++||+++|+||++|+++||+|+.||+
T Consensus 384 sLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll 416 (418)
T PTZ00144 384 ALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL 416 (418)
T ss_pred EEecchhhhChHHHHHHHHHHHHHhcCHHHHhh
Confidence 999999999999999999999999999998764
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=2.7e-72 Score=544.81 Aligned_cols=403 Identities=28% Similarity=0.426 Sum_probs=337.1
Q ss_pred ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
.-...+++-++||++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.++|+|++|+-+.||...+|++|..++-+
T Consensus 62 ~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve 141 (474)
T KOG0558|consen 62 SGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVE 141 (474)
T ss_pred cceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeec
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred hhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCcc
Q 011684 136 EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI 215 (479)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI 215 (479)
+.... ... +..+++...+ . .... .....+..++|++||||+|+||||+.|+|||.+|||
T Consensus 142 ~~~ds-~e~-----s~es~~vs~~-------~-------~~~~-~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRv 200 (474)
T KOG0558|consen 142 DSQDS-PED-----SDESPAVSLG-------E-------SKQG-EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRV 200 (474)
T ss_pred cCcCC-ccc-----CCccccccCC-------C-------Cchh-hhhccccccCHHHHHHHHHhCCceEeeeccCCCCcc
Confidence 32110 000 0000000000 0 0000 011246789999999999999999999999999999
Q ss_pred chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHH
Q 011684 216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALD 295 (479)
Q Consensus 216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~ 295 (479)
+|+||++|+......-..+.+..-....++.+.....+.......+|+.+.+|+|-+.|++++.||||.++.|||+|.|.
T Consensus 201 LKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLv 280 (474)
T KOG0558|consen 201 LKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLV 280 (474)
T ss_pred hHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccccccccChHHHH
Confidence 99999999976432110000000000000000111122334466899999999999999999999999999999999999
Q ss_pred HHHHHhCCC------CCCHHHHHHHHHHHHHhhCccccccccCC-CeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHH
Q 011684 296 ALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLY 368 (479)
Q Consensus 296 ~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~~~~~-~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ 368 (479)
+||+++|.. ++||++||+||++.||-++|.+|+.++.. ..|++.-+.|||+|++++.||++|.|+|++.+++.
T Consensus 281 klr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~ 360 (474)
T KOG0558|consen 281 KLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIF 360 (474)
T ss_pred HHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHH
Confidence 999998853 68999999999999999999999999643 58889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEE
Q 011684 369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNV 448 (479)
Q Consensus 369 ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lsl 448 (479)
||++++++|.+..+.|+|.+.|+.+|||++||+|.+|.++..|++++|+++|.++|++...|-.++.|++....+|.|++
T Consensus 361 eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~Vsw 440 (474)
T KOG0558|consen 361 EIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSW 440 (474)
T ss_pred HHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999888887788888899999999
Q ss_pred EecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 449 TADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 449 t~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
++||||+||+..|||-+.+++|||+|+.||+
T Consensus 441 sADHRViDGaTmarFsn~WK~YlE~Pa~mll 471 (474)
T KOG0558|consen 441 SADHRVIDGATMARFSNQWKEYLENPALMLL 471 (474)
T ss_pred ecCceeeccHHHHHHHHHHHHHhhCHHHHhh
Confidence 9999999999999999999999999998775
No 16
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=3.8e-67 Score=525.11 Aligned_cols=292 Identities=29% Similarity=0.415 Sum_probs=251.6
Q ss_pred cccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCceecc
Q 011684 186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPA-AAP-AAPLLPGSTVVPF 263 (479)
Q Consensus 186 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~p~ 263 (479)
+++||+||+||+|+||||++|+|||++|||+++||++|+...........+.+.+....++. ..+ ...+....+.+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 57999999999999999999999999999999999999753211000000000000000000 000 0001112456899
Q ss_pred chhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccC-CC
Q 011684 264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKD-GK 334 (479)
Q Consensus 264 s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~-~~ 334 (479)
++||++|+++|.+| +++|||+++.+||+|+|+++|+++++ .++||++||+||+++||.+||.||++|++ ++
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999 79999999999999999999999874 16999999999999999999999999974 35
Q ss_pred eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCC
Q 011684 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP 414 (479)
Q Consensus 335 ~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~ 414 (479)
.+++|+++|||+||++++||++|||++++++|+.||+++++++.+++|+|+|.++|+.||||+|||+|++|..+|+||+|
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn 241 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVIN 241 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684 415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT 478 (479)
Q Consensus 415 ~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll 478 (479)
+||+|||++|++++++++. ||+++++++|+|+|+||||+|||+++++||++|+++||+|+.|+
T Consensus 242 ~pq~aILgvG~i~~~pvv~-~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~ 304 (306)
T PRK11857 242 YPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILG 304 (306)
T ss_pred CCccceeecccceEEeEEE-CCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence 9999999999999999985 79999999999999999999999999999999999999999765
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-67 Score=532.69 Aligned_cols=292 Identities=30% Similarity=0.492 Sum_probs=254.0
Q ss_pred CccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecc
Q 011684 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPF 263 (479)
Q Consensus 184 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 263 (479)
.++++||+||+||+|+||||++|+|||++|||+++||++|+....... ..+++.+.+.....+.. .+.....+.+|+
T Consensus 47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~v~l 123 (347)
T PRK14843 47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIKSPAQIEKVEEVPDN-VTPYGEIERIPM 123 (347)
T ss_pred ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--cccCCCCCccccCCCcc-cccCCcceeeeC
Confidence 466899999999999999999999999999999999999974321100 00000000000000000 001112456899
Q ss_pred chhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccccCC-C
Q 011684 264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDG-K 334 (479)
Q Consensus 264 s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~~~~-~ 334 (479)
++|||.|+++|.+| +++|||++..++|+|+|+++|+++++ .++||++||+||++.||.+||.||++|+++ +
T Consensus 124 ~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 203 (347)
T PRK14843 124 TPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGK 203 (347)
T ss_pred cHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCC
Confidence 99999999999999 89999999999999999999998863 269999999999999999999999999753 5
Q ss_pred eeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCC
Q 011684 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP 414 (479)
Q Consensus 335 ~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~ 414 (479)
.+++|+++|||+||++++||++|||++++++++.+|+++++++.+++|+|+|+++|++||||||||+|+||+++|+||+|
T Consensus 204 ~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIIn 283 (347)
T PRK14843 204 TIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIIN 283 (347)
T ss_pred eEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 415 ~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+||+|||++|++.++|+++ ||+++++++|+|+|+||||+|||+++++||++|+++||+|+.|++
T Consensus 284 pPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 284 QPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred CCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 9999999999999999987 799999999999999999999999999999999999999998874
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=3e-65 Score=498.09 Aligned_cols=369 Identities=25% Similarity=0.418 Sum_probs=292.5
Q ss_pred ceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 56 ~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
....++.+|.++++++||.|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|..|+.|+.|...
T Consensus 70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhhHHHHHhhhhccCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCC
Q 011684 136 EAEVAQAKAKAASAGAAAPASHPVTST--PVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG 213 (479)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~G 213 (479)
..... .... +|+.+.|..+ .++.|.+. +.+. ..++..+.-+|.
T Consensus 150 aApa~---~~~~-----apa~~~pk~~~a~~a~p~~~----s~~~-p~~~apv~e~p~---------------------- 194 (457)
T KOG0559|consen 150 AAPAK---GGAS-----APAKAEPKTAPAAAAPPKPS----SKPP-PKEAAPVAESPP---------------------- 194 (457)
T ss_pred CCCcc---cccc-----CCCccCCCCCCCCCCCCCcc----CCCC-ccccCCCCCCCC----------------------
Confidence 32211 1000 1111111000 00011000 0000 000000000000
Q ss_pred ccchhhHHHhhccCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCceeccchhhHHHHHHhhhcc-CccEEEE
Q 011684 214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAP-------AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRV 285 (479)
Q Consensus 214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~p~s~~r~~ia~~m~~S~-~vP~~~~ 285 (479)
++ +.+.+.++++... .+.....+.-.+.+++|++||++||.+|.+|+ +-...+.
T Consensus 195 ----------------~p--~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTT 256 (457)
T KOG0559|consen 195 ----------------AP--SSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTT 256 (457)
T ss_pred ----------------CC--CCCCCCCccccCccccCCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 00 0000000000000 00001111223568999999999999999995 5556667
Q ss_pred EEEEeccHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeE
Q 011684 286 GYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV 358 (479)
Q Consensus 286 ~~~iDvt~l~~~~~~~k~~-------~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pv 358 (479)
+-|||+++|+++|+++|+. ++.|+.+|+||++.||++.|.+|+.|+ |+.|+|+|++||++||.++.||++||
T Consensus 257 FNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId-g~~iVYRDyvDISvAVaTpkGLVvPV 335 (457)
T KOG0559|consen 257 FNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID-GDDIVYRDYVDISVAVATPKGLVVPV 335 (457)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec-CCeeEEeecceeEEEeecCCceeeee
Confidence 7899999999999998753 678899999999999999999999995 67999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccceeecCCCCCceEEEeCcceEEEEEcCCCeE
Q 011684 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF 438 (479)
Q Consensus 359 i~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~ftpii~~~~~ail~vG~~~~~~v~~~~G~i 438 (479)
|||++.+++.||.+.+..|..++|+|+|..+|+.||||||||-|.||....|||||+||++||++..|.++|++. +|++
T Consensus 336 iRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~V 414 (457)
T KOG0559|consen 336 IRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQV 414 (457)
T ss_pred ecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7999
Q ss_pred EEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 439 GVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 439 ~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
++|++|.|.||||||++||-++--||+.+++++|||..|||
T Consensus 415 v~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559|consen 415 VPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred eeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhh
Confidence 99999999999999999999999999999999999998875
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=5.8e-56 Score=429.56 Aligned_cols=222 Identities=41% Similarity=0.633 Sum_probs=197.3
Q ss_pred CCceeccchhhHHHHHHhhhc-cCccEEEEEEEEeccHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCcccccc
Q 011684 257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNAS 329 (479)
Q Consensus 257 ~~~~~p~s~~r~~ia~~m~~S-~~vP~~~~~~~iDvt~l~~~~~~~k~~------~~s~~~~likAva~Al~~~P~~n~~ 329 (479)
..+++|++++||+|+++|.+| +++|||+++.+||+|+|+++++++++. ++|+++|++||+++||.+||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 367899999999999999999 599999999999999999999988752 8999999999999999999999999
Q ss_pred ccCCCeeEEcCcccEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecCCCCccce
Q 011684 330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409 (479)
Q Consensus 330 ~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg~~G~~~f 409 (479)
|++++++++|+++|+|+||++++||++|||++++++|+.||+++++++.+++|+|+|+++|++||||+|||+|++|+++|
T Consensus 83 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~ 162 (231)
T PF00198_consen 83 WDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESF 162 (231)
T ss_dssp EETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCE
T ss_pred cccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCccee
Confidence 97554599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCccccC
Q 011684 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLTL 479 (479)
Q Consensus 410 tpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll~ 479 (479)
+||+||||+|||++|+++++|++ ++|+++++++|+|+|+||||++||+++++||++|+++||+|++|||
T Consensus 163 ~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 163 TPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp E----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred EccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 99999999999999999999999 4899999999999999999999999999999999999999999986
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=6.9e-45 Score=393.26 Aligned_cols=215 Identities=29% Similarity=0.409 Sum_probs=202.7
Q ss_pred CceeccchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCccccccc
Q 011684 258 STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASC 330 (479)
Q Consensus 258 ~~~~p~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~-------~~~s~~~~likAva~Al~~~P~~n~~~ 330 (479)
.+.+||++++++|+++|..|+.+|+++...+|+++.|+++|+.+|+ .|+||+++|+||+++||++||.+|++|
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 4678999999999999999999999999999999999999999873 279999999999999999999999999
Q ss_pred c--CCC-eeEEcCcccEEEEEEeC-----CCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEeecC
Q 011684 331 K--DGK-SFTYNANINIAVAVAIN-----GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402 (479)
Q Consensus 331 ~--~~~-~i~~~~~i~i~~aV~~~-----~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l~~~d~~~~tftISnlg 402 (479)
. ||+ .++++++||+|+||+++ +||++|+|+++++++|.+|.++++++++|+|+|+|+++|++|+||+|||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 7 442 49999999999999997 579999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeecCCCCCceEEEeCcceEEEEEc-----CCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhc
Q 011684 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-----ADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVE 472 (479)
Q Consensus 403 ~~G~~~ftpii~~~~~ail~vG~~~~~~v~~-----~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le 472 (479)
+||..+|+||+|+||+|||++|++...+++. .+|++.++++|+|++|||||||||+++|+||+.|+++|+
T Consensus 275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999877763 246799999999999999999999999999999999998
No 21
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.97 E-value=2.6e-30 Score=245.69 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=148.4
Q ss_pred cchhhHHHHHHhhhccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcc
Q 011684 263 FTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI 342 (479)
Q Consensus 263 ~s~~r~~ia~~m~~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i 342 (479)
+..--|+---..-++...|+|++|++||+|+|.++ .|++|++|+.+++|++++|+|++|+||.|+.+++++++||.|
T Consensus 8 ~~~W~Rke~f~~f~~~~~p~~svT~~lDvT~l~~~---~K~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i 84 (206)
T PF00302_consen 8 LETWPRKEHFEFFRNFDNPYFSVTVNLDVTNLYKY---AKEKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRI 84 (206)
T ss_dssp GGGSTTHHHHHHHTTTSBEEEEEEEEEE-HHHHHH---HHHTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-
T ss_pred hhcCccHHHHHHHhcCCCceEecceeEEhHHHHHH---HHHcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCc
Confidence 33333343334445678899999999999999555 555699999999999999999999999999876799999999
Q ss_pred cEEEEEEeCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcC-CCCCCC-CCCCeEEEeecCCCCcccee-ecCCCCC--
Q 011684 343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHE-YNSGTFTLSNLGMFGVDRFD-AILPPGQ-- 417 (479)
Q Consensus 343 ~i~~aV~~~~gl~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~~d-~~~~tftISnlg~~G~~~ft-pii~~~~-- 417 (479)
+++++|..+++..+..++..+..++.+|.+.+.+.++++++. .+.+++ ...+.|.+||++|+.+++++ ++...+.
T Consensus 85 ~ps~Tv~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~ 164 (206)
T PF00302_consen 85 DPSYTVFHKDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDS 164 (206)
T ss_dssp EEEEEEEETTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-S
T ss_pred ceeeeEEeCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCccc
Confidence 999999987654666778899999999999999999998664 455443 45689999999999999987 4444432
Q ss_pred ceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHH
Q 011684 418 GAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFS 468 (479)
Q Consensus 418 ~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~ 468 (479)
.++++||++.++ +| |.+|||++++||++|||+|+|+|++.||
T Consensus 165 ~P~it~GK~~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 165 IPRITWGKYFEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp S-EEEEE--EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred ccEEEeeeeEeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 589999999987 78 6689999999999999999999999987
No 22
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.97 E-value=3.2e-30 Score=246.49 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=156.9
Q ss_pred ccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeEE
Q 011684 280 VPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVL 359 (479)
Q Consensus 280 vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pvi 359 (479)
-|.|++|++||+|+|. +.+|++|++|++.++||+++|+|++|+||+|+. ++++++||.|+++++|..+++..+..+
T Consensus 30 ~~~fsiT~~iDiT~l~---~~~K~~~~~fy~~~ly~v~kavN~~~eFR~r~~-~~~v~~~D~i~ps~Ti~~~~~~tFs~~ 105 (219)
T PRK13757 30 QCTYNQTVQLDITAFL---KTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIWDSVHPCYTVFHEQTETFSSL 105 (219)
T ss_pred CCceEEEEEEEHHHHH---HHHHHcCCChHHHHHHHHHHHHhcCHhHheEEE-CCeEEEEeEEeeeEEEEeCCCceEEEE
Confidence 3449999999999994 555666999999999999999999999999996 458899999999999998877667788
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCCeEEEeecCCCCcccee-ecCCCC--CceEEEeCcceEEEEEcCC
Q 011684 360 QDADKLDLYLLSQKWKELVEKARSK-QLQPHEYNSGTFTLSNLGMFGVDRFD-AILPPG--QGAIMAVGASKPTVVADAD 435 (479)
Q Consensus 360 ~~a~~~sl~ei~~~~~~l~~~ar~~-~l~~~d~~~~tftISnlg~~G~~~ft-pii~~~--~~ail~vG~~~~~~v~~~~ 435 (479)
+..+..++.+|.+.+...++++++. .+.+.+...+.|.||++||+.+++|+ ++.+.. ..+++++|++.++ +
T Consensus 106 ~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~-----~ 180 (219)
T PRK13757 106 WSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ-----G 180 (219)
T ss_pred EecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE-----C
Confidence 9999999999999999999998875 45555556789999999999999986 444333 2589999999876 7
Q ss_pred CeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 436 GFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 436 G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
| |.+|||++++||++|||+|+|+|++.||++|++
T Consensus 181 g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 181 D----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred C----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 7 678999999999999999999999999999976
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.94 E-value=7.1e-26 Score=207.62 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=164.0
Q ss_pred hccCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeE
Q 011684 276 ESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLI 355 (479)
Q Consensus 276 ~S~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~ 355 (479)
++...|||.++.++|+|++..++ |++|++|++++++|+.+++++|+|||.|+.+ +++++||.+++.++|.++++..
T Consensus 24 R~~~~p~y~i~~~LDvtn~~~~v---k~~~l~Ff~a~l~avtr~~n~~~EFRlr~~~-~~~~~~d~v~p~~tv~~~~~e~ 99 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNFYGYV---KENGLSFFPALLYAVTRCANRHQEFRLRIQN-GQLGYWDNVPPMYTVFHGETET 99 (219)
T ss_pred hhcccceEeeeeeeehhHHHHHH---HHcCCcchHHHHHHHHHHhcccHHhHhhhcC-CeeEEeecCCcceEEEcCCCcE
Confidence 66789999999999999995554 4459999999999999999999999999975 5999999999999999988888
Q ss_pred EeEEecCCCCCHHHHHHHHHHHHHHHHcCC-CCCCC-CCCCeEEEeecCCCCccceeecCCCCC---ceEEEeCcceEEE
Q 011684 356 TPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHE-YNSGTFTLSNLGMFGVDRFDAILPPGQ---GAIMAVGASKPTV 430 (479)
Q Consensus 356 ~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~-l~~~d-~~~~tftISnlg~~G~~~ftpii~~~~---~ail~vG~~~~~~ 430 (479)
+.+++-....|+.+|.+.+...+++++.+. +.+++ -....+.+||++|+.+++++.-+.... .+++.+|+..++
T Consensus 100 Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~~~- 178 (219)
T COG4845 100 FSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFYEE- 178 (219)
T ss_pred EEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecceecc-
Confidence 889999999999999999999999988765 33322 335788899999999888775444222 489999999876
Q ss_pred EEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCcccc
Q 011684 431 VADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVENPESLT 478 (479)
Q Consensus 431 v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p~~ll 478 (479)
||++ +|||++++||+.|||+|+++|++.||++++.|-.+.
T Consensus 179 ----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~~ 218 (219)
T COG4845 179 ----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCIP 218 (219)
T ss_pred ----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCCC
Confidence 9965 599999999999999999999999999999987653
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.77 E-value=9.6e-19 Score=139.95 Aligned_cols=74 Identities=38% Similarity=0.691 Sum_probs=72.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999986
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.76 E-value=2e-18 Score=177.28 Aligned_cols=120 Identities=33% Similarity=0.525 Sum_probs=103.2
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.++|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+.+.+.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV 81 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCCccch
Q 011684 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217 (479)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~ 217 (479)
. .. .....++|++++++++ ++++..+.+++..+++..
T Consensus 82 ~------------------~~------------------------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 118 (371)
T PRK14875 82 S------------------DA------------------------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGG 118 (371)
T ss_pred C------------------cc------------------------cccccccchhhhcccc-ccchhhccCCCCcceEcC
Confidence 0 00 0123678888998888 899998888888777765
Q ss_pred hhH
Q 011684 218 EDV 220 (479)
Q Consensus 218 ~DV 220 (479)
.++
T Consensus 119 ~~i 121 (371)
T PRK14875 119 RTV 121 (371)
T ss_pred cEE
Confidence 555
No 26
>PRK06748 hypothetical protein; Validated
Probab=99.67 E-value=4.5e-16 Score=126.07 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=60.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe-cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES-DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet-~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
|+|.+|+|++||.|++||+|++||| ||+.++|+||.+|+|.++++++||.|++|++|+.|++
T Consensus 13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 9999999999999999999999999 8999999999999999999999999999999999964
No 27
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.58 E-value=8.3e-15 Score=116.21 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 28
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.55 E-value=1.2e-14 Score=130.45 Aligned_cols=61 Identities=21% Similarity=0.493 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|++.+.+|++||+|++||.||+||+|||+++|+||.+|+|.+|++++||.|..||+|+.|.
T Consensus 79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 29
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.54 E-value=2.9e-14 Score=151.07 Aligned_cols=81 Identities=43% Similarity=0.746 Sum_probs=76.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC-eecCCCeEEEEecChh
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAETEA 137 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~-~v~~G~~l~~i~~~~~ 137 (479)
.+|+||+||++|+||+|.+|+|++||.|++||.|++||+||++++|+|+.+|+|.++++++|+ .|++|++|++|.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 489999999999999999999999999999999999999999999999999999999999995 7999999999976554
Q ss_pred hH
Q 011684 138 EV 139 (479)
Q Consensus 138 ~~ 139 (479)
+.
T Consensus 83 ~~ 84 (464)
T PRK11892 83 SA 84 (464)
T ss_pred cc
Confidence 43
No 30
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.53 E-value=5.5e-14 Score=111.80 Aligned_cols=72 Identities=29% Similarity=0.548 Sum_probs=69.6
Q ss_pred EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 61 i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
|.+|+++.++.+|++.+|++++||.|++||+|+.||+||+.++|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999874
No 31
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.49 E-value=2.8e-13 Score=130.53 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=63.2
Q ss_pred cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
....+.+..|..|+ .|+|++||.|++||+|++||+||++++|+|+.+|+|.+|++++|+.|..|++|++|+
T Consensus 203 PmaGtf~r~p~pge--------~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 203 PMAGTFYRSPAPGE--------PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CcCeEEEeccCCCC--------cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 34455555665554 699999999999999999999999999999999999999999999999999999984
No 32
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.48 E-value=1.7e-13 Score=108.28 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|.+|++++||.|++||+|++||+||+.++|.++.+|+|.++++++|+.|..|++|++|+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 33
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.47 E-value=1.6e-13 Score=151.22 Aligned_cols=75 Identities=29% Similarity=0.432 Sum_probs=72.7
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
.+|+||+|| |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|++|++.
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 479999999 999999999999999999999999999999999999999999999999999999999999999765
No 34
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.42 E-value=5.2e-13 Score=145.84 Aligned_cols=77 Identities=32% Similarity=0.613 Sum_probs=74.6
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
.+|.||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|++|++|+.|...
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999754
No 35
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.41 E-value=8.9e-13 Score=116.10 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=59.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
|+|.+|++++||.|++||+|+++|+||++++|.||++|+|.++++++||.|..|++|+.|
T Consensus 70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 36
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.39 E-value=2.4e-13 Score=94.33 Aligned_cols=38 Identities=47% Similarity=0.670 Sum_probs=34.3
Q ss_pred ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHH
Q 011684 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222 (479)
Q Consensus 185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~ 222 (479)
++.+||+||+||+|+|||+++|.|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 57899999999999999999999999999999999985
No 37
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.36 E-value=2.2e-12 Score=116.98 Aligned_cols=60 Identities=27% Similarity=0.503 Sum_probs=59.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
|+|.+|+|++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999987
No 38
>PRK07051 hypothetical protein; Validated
Probab=99.36 E-value=5.6e-12 Score=102.36 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=63.3
Q ss_pred EEEecCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684 59 REIFMPALSSTMTEGKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~ 131 (479)
.+|..| + .|++.+ |++++||.|++||.|++||+||+.++|+||.+|+|.++++++|+.|..|++|++
T Consensus 4 ~~~~ap-~-----~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSP-L-----PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCC-C-----ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 456666 2 278888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 011684 132 LA 133 (479)
Q Consensus 132 i~ 133 (479)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 39
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.34 E-value=3.4e-12 Score=138.81 Aligned_cols=78 Identities=27% Similarity=0.563 Sum_probs=74.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
++|+||++|+ |.+|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|..|++|+.|.+.+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~ 80 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence 4799999999 99999999999999999999999999999999999999999999999999999999999999975443
No 40
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.31 E-value=5.8e-12 Score=115.00 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=58.3
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|++.. |+|++||.|++||+||.||+||+.++|+|+.+|+|.+|+++.|+.|..|++|+.|.
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 67775 99999999999999999999999999999999999999999999999999999873
No 41
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.30 E-value=6.7e-12 Score=136.10 Aligned_cols=75 Identities=35% Similarity=0.593 Sum_probs=72.1
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+|+||+||+. .+|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|.+|++|++|...
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 99999999999999999999999999999999999999999999999999999999999999643
No 42
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.30 E-value=1.4e-11 Score=95.40 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=59.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
.|+|.+|++++||.|++||.|+.||++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999875
No 43
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.28 E-value=1.5e-11 Score=133.42 Aligned_cols=62 Identities=24% Similarity=0.454 Sum_probs=60.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 44
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.25 E-value=1.9e-11 Score=111.55 Aligned_cols=61 Identities=20% Similarity=0.412 Sum_probs=57.8
Q ss_pred EEEEE-------EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|++.. |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|.
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 56665 99999999999999999999999999999999999999999999999999999873
No 45
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.20 E-value=1.9e-10 Score=89.21 Aligned_cols=73 Identities=47% Similarity=0.816 Sum_probs=70.4
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
++.+|+++....+|+|.+|++..|+.|..|+.++.+|++|+.+.+.++.+|++.+.++.+|+.+..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874
No 46
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.08 E-value=2.8e-10 Score=124.00 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=56.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI 129 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l 129 (479)
|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999975
No 47
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.07 E-value=2.9e-10 Score=133.15 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 48
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.06 E-value=5.8e-10 Score=121.67 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=59.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|++|+|++||.|++||+|++||+|||+.+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.06 E-value=4.6e-10 Score=130.34 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 50
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.98 E-value=7.9e-10 Score=116.03 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|+.+.|++|++|.+||+|+++|+|||++.|+||.+|+|.++.+.+|+.|..|++|++++
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 51
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.93 E-value=3e-09 Score=116.29 Aligned_cols=61 Identities=28% Similarity=0.479 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|++|+|++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 531 G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 52
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.89 E-value=4.7e-09 Score=122.46 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=60.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 53
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.89 E-value=1.8e-09 Score=116.68 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=73.0
Q ss_pred cccccceeeecceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeec
Q 011684 45 SRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124 (479)
Q Consensus 45 ~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~ 124 (479)
...+++....+..++--.|| |.|+++.|++||+|++||+|+.+|+|||+..|.||+||+|.+++|..||.|.
T Consensus 1068 ~~~r~KAd~~Np~higApmp--------G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~ 1139 (1149)
T COG1038 1068 VVARRKADPGNPGHIGAPMP--------GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQID 1139 (1149)
T ss_pred cccccccCCCCccccCCCCC--------CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccc
Confidence 34455566667777777788 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe
Q 011684 125 VGAAIGILA 133 (479)
Q Consensus 125 ~G~~l~~i~ 133 (479)
.|+.|..++
T Consensus 1140 ~gDLLi~~~ 1148 (1149)
T COG1038 1140 GGDLLVVVE 1148 (1149)
T ss_pred cCceEEEcc
Confidence 999999874
No 54
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.69 E-value=2e-08 Score=106.67 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=72.5
Q ss_pred CcccccceeeecceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCee
Q 011684 44 SSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA 123 (479)
Q Consensus 44 ~~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v 123 (479)
-.+.|++.++....++--.|| |+|+++.|++|++|+|||+||++.+|||+|-|.||.+|+|+++.+..|+.+
T Consensus 1094 e~v~~PkA~~~~~g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~ 1165 (1176)
T KOG0369|consen 1094 EIVTRPKADPGVKGHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKV 1165 (1176)
T ss_pred hhcccccCCCCCcccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcc
Confidence 345566666655555566677 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEe
Q 011684 124 PVGAAIGILA 133 (479)
Q Consensus 124 ~~G~~l~~i~ 133 (479)
..|+.|++++
T Consensus 1166 ~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1166 EGGDLIVELE 1175 (1176)
T ss_pred cccceEEEcc
Confidence 9999999885
No 55
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.31 E-value=4.6e-07 Score=94.24 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=58.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
|.|.+++|++||+|.+||.|++++.|||+..+++|.+|+|..+.++.|++|..|.+|.++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEe
Confidence 899999999999999999999999999999999999999999999999999999999886
No 56
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.30 E-value=1.3e-06 Score=73.26 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=49.6
Q ss_pred eEEEecCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCe
Q 011684 58 IREIFMPALSSTMTEGKIVS-WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES 122 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~-w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~ 122 (479)
...|-|-+.+..+ =|+|.. |++++||.|++||.|+.||++|+..+|.||.+|+|.++..+.++.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 3444444444332 367777 666779999999999999999999999999999999987666543
No 57
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.05 E-value=7.4e-06 Score=70.40 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=36.4
Q ss_pred CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC
Q 011684 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120 (479)
Q Consensus 81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g 120 (479)
++|+.|++||+|++||++|+..+|.||.+|+|.+++-+..
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 6799999999999999999999999999999999864443
No 58
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=92.32 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=60.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.-||+++|+|+.|+.|..||+-++||.|||.|.+.++.+|+| +...++|+.+..|++|+.+..++
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 459999999999999999999999999999999999999999 67889999999999999997544
No 59
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.96 E-value=3e-05 Score=81.83 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=57.0
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEec------------------------------------------------ceeeE
Q 011684 73 GKIVSWI-KSEGDVLSKGESVVVVESD------------------------------------------------KADMD 103 (479)
Q Consensus 73 g~i~~w~-v~~Gd~V~~g~~l~~vet~------------------------------------------------K~~~~ 103 (479)
|.|.+++ +++||.|++||+|++|++. .....
T Consensus 132 G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~~ 211 (409)
T PRK09783 132 GFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRFT 211 (409)
T ss_pred EEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcEE
Confidence 9999998 9999999999999999831 01357
Q ss_pred EEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 104 VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 104 v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
|+||++|+|.+..+++|+.|..|++|+.|.+.+
T Consensus 212 I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 212 LKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 999999999999999999999999999997654
No 60
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.93 E-value=2e-05 Score=68.12 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=37.2
Q ss_pred EEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 74 KIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 74 ~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
.|+.+.. ++|+.|++||.|++||++|+..+|.||.+|+|.++.
T Consensus 33 ~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 33 NILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 3444433 669999999999999999999999999999999985
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.92 E-value=1.6e-05 Score=71.58 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=44.0
Q ss_pred EEEEEEEcC-CCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCC
Q 011684 73 GKIVSWIKS-EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121 (479)
Q Consensus 73 g~i~~w~v~-~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~ 121 (479)
|.|+.+.+. +|+.|++||.++.||++|+..+|.||.+|+|.++..+..+
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 678888876 8999999999999999999999999999999998866543
No 62
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.90 E-value=4.2e-05 Score=78.14 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=32.3
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 47999999999999999999999999999997654
No 63
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.85 E-value=3.7e-05 Score=78.14 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=56.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------- 99 (479)
|+|.+++|++||.|++||+|+.++...
T Consensus 56 G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a~ 135 (310)
T PRK10559 56 GLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTVL 135 (310)
T ss_pred eEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998621
Q ss_pred -----------------eeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 100 -----------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 100 -----------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
-...|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 136 a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 136 HQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCC
Confidence 0356999999999999999999999999999987543
No 64
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.83 E-value=6e-05 Score=66.60 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe---cCCCCeec---CCC-eEEEEecCh
Q 011684 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV---VPEGESAP---VGA-AIGILAETE 136 (479)
Q Consensus 81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~---~~~g~~v~---~G~-~l~~i~~~~ 136 (479)
++|++|++||+++.||++|...+|.||.+|+|.++. .+..+.+. .|+ -|+.|...+
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~ 108 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD 108 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence 679999999999999999999999999999999994 44445554 565 899987654
No 65
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.81 E-value=5.6e-05 Score=76.32 Aligned_cols=65 Identities=20% Similarity=0.411 Sum_probs=57.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecc----------------------------------------------------
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDK---------------------------------------------------- 99 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K---------------------------------------------------- 99 (479)
.|+|.+++|++||.|++||+|+.++..-
T Consensus 34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~ 113 (322)
T TIGR01730 34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA 113 (322)
T ss_pred cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 3999999999999999999999997521
Q ss_pred -------------------eeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 100 -------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
....|+||.+|+|..+.++.|+.+..|++|+.|.+.+
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 1346999999999999999999999999999997543
No 66
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.74 E-value=7e-05 Score=77.19 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=32.1
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 46999999999999999999999999999997654
No 67
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.64 E-value=0.00012 Score=76.83 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=32.1
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 47999999999999999999999999999997654
No 68
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.59 E-value=0.00022 Score=74.55 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=54.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------- 99 (479)
|+|.++++++||.|++||+|+.|+..-
T Consensus 72 G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a 151 (385)
T PRK09578 72 GIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQA 151 (385)
T ss_pred EEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999997531
Q ss_pred ------------------eeeEEEcCCCeEEEEEecCCCCeecCC--CeEEEEecC
Q 011684 100 ------------------ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET 135 (479)
Q Consensus 100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G--~~l~~i~~~ 135 (479)
....|+||++|+|.+.++++|+.|..| ++|+.|.+.
T Consensus 152 ~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 152 KAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 024799999999999999999999885 589888654
No 69
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.59 E-value=0.00024 Score=74.70 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=54.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------- 99 (479)
|+|.++++++||.|++||+|++|+...
T Consensus 74 G~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a 153 (397)
T PRK15030 74 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA 153 (397)
T ss_pred EEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999997421
Q ss_pred ------------------eeeEEEcCCCeEEEEEecCCCCeecCCCe--EEEEecC
Q 011684 100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGAA--IGILAET 135 (479)
Q Consensus 100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~~--l~~i~~~ 135 (479)
-...|+||++|+|.+.+++.|+.|..|++ |+.|.+.
T Consensus 154 ~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 154 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence 03469999999999999999999999985 7777543
No 70
>PRK12784 hypothetical protein; Provisional
Probab=97.57 E-value=0.00037 Score=54.94 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=58.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceee-EEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADM-DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~-~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
-.|++.++++.+++.|-+.+.|+-|+++.-.+ .|.--.+|.|..+.+++||.|..++.|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 46999999999999999999999999965554 488899999999999999999999999999764
No 71
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.56 E-value=0.00014 Score=74.39 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=31.6
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
..|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 5799999999999999999999999999999754
No 72
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.51 E-value=0.00032 Score=73.41 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=54.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc-----------------------------------------------------
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------- 99 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K----------------------------------------------------- 99 (479)
|+|.++++++||.|++||+|++|+...
T Consensus 70 G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a 149 (385)
T PRK09859 70 GIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEA 149 (385)
T ss_pred EEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999998530
Q ss_pred ------------------eeeEEEcCCCeEEEEEecCCCCeecCCC--eEEEEecC
Q 011684 100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAET 135 (479)
Q Consensus 100 ------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~--~l~~i~~~ 135 (479)
....|+||++|+|.+.+++.|+.|..|+ +|+.|.+.
T Consensus 150 ~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 150 EANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 1257999999999999999999999985 68887653
No 73
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.51 E-value=5.8e-05 Score=77.78 Aligned_cols=42 Identities=38% Similarity=0.533 Sum_probs=39.0
Q ss_pred ccccChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (479)
Q Consensus 185 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 226 (479)
+.++||.+|++|+++|||+..|+|||++|||+++||++|...
T Consensus 5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 556899999999999999999999999999999999999764
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.46 E-value=0.00028 Score=51.83 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=33.4
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
+..|.+|.+|+|.++++++|+.|..|++|+.+...+-.
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 36799999999999999999999999999999765543
No 75
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.46 E-value=0.00017 Score=63.66 Aligned_cols=48 Identities=31% Similarity=0.240 Sum_probs=39.5
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCC
Q 011684 73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120 (479)
Q Consensus 73 g~i~~w~-v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g 120 (479)
|.|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++.-+.-
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~ 84 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE 84 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence 3444443 25799999999999999999999999999999999874443
No 76
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.33 E-value=0.00071 Score=71.63 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=53.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecc----------------------------------------------------
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDK---------------------------------------------------- 99 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K---------------------------------------------------- 99 (479)
.|+|.++++++||.|++||+|++|....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 3999999999999999999999996420
Q ss_pred -------------------eeeEEEcCCCeEEEEEecCCCCeecCCC--eEEEEec
Q 011684 100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAE 134 (479)
Q Consensus 100 -------------------~~~~v~ap~~G~v~~i~~~~g~~v~~G~--~l~~i~~ 134 (479)
-...|+||++|+|..+.++.|+.|..|+ +|+.|.+
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence 0237999999999999999999999984 6777754
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.28 E-value=0.001 Score=69.26 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred EEEcCCCeEEEEEecCCCCeecCC---CeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVG---AAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G---~~l~~i~~~~ 136 (479)
.|+||++|+|..+.++.|+.|..| ++|+.|.+.+
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS 221 (370)
T ss_pred EEECCCCcEEEeeecCCCcEeecccCCceEEEEecCC
Confidence 799999999999999999999765 4788886543
No 78
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.22 E-value=0.00035 Score=51.35 Aligned_cols=28 Identities=29% Similarity=0.531 Sum_probs=25.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
.|+|.+|+|++||.|++||+|++++...
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 3999999999999999999999998754
No 79
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.18 E-value=0.00036 Score=70.61 Aligned_cols=64 Identities=23% Similarity=0.464 Sum_probs=47.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecce---------------------------------------------------
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------------------------------------------------- 100 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~--------------------------------------------------- 100 (479)
.|+| +|+|++||.|++||+|+.+++...
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 107 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS 107 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence 3999 999999999999999999995311
Q ss_pred ----------------ee----------EEEcCCCeEEE-------------------------EEecCCCCeecCCCeE
Q 011684 101 ----------------DM----------DVETFYDGILA-------------------------AIVVPEGESAPVGAAI 129 (479)
Q Consensus 101 ----------------~~----------~v~ap~~G~v~-------------------------~i~~~~g~~v~~G~~l 129 (479)
.. .|.||++|+|. ++.+++|+.|..|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l 187 (328)
T PF12700_consen 108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPL 187 (328)
T ss_dssp TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCS
T ss_pred HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCcee
Confidence 11 39999999999 9999999999999999
Q ss_pred EEEecCh
Q 011684 130 GILAETE 136 (479)
Q Consensus 130 ~~i~~~~ 136 (479)
+.|.+..
T Consensus 188 ~~i~~~~ 194 (328)
T PF12700_consen 188 FTIADLS 194 (328)
T ss_dssp EEEEEES
T ss_pred eeeccCC
Confidence 9997653
No 80
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.10 E-value=0.0012 Score=57.97 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=33.4
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 73 g~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
|.|+.+.. ++|++|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 33433333 569999999999999999999999999999999885
No 81
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.02 E-value=0.0015 Score=66.63 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=28.9
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|+||++|+|..+.+..|+.|.. ++|+.|.+.+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 68999999999999999999986 8898887543
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.95 E-value=0.0024 Score=62.45 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=57.1
Q ss_pred cceeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
+...+-|.-|. .|.+. ..++.||.|+|||+|+.|+. .+|+||.+|+|.. ++.+|-.|..|.-|+.|.+
T Consensus 161 ~~~Er~IrAp~------~Gi~~-~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 161 YTHERVLRAPA------DGIVT-PTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred ccceEEEECCC------CeEEe-eccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECC
Confidence 34456666662 25554 49999999999999999974 7999999999976 6799999999999999976
Q ss_pred Ch
Q 011684 135 TE 136 (479)
Q Consensus 135 ~~ 136 (479)
-.
T Consensus 229 R~ 230 (256)
T TIGR03309 229 RG 230 (256)
T ss_pred CC
Confidence 44
No 83
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0017 Score=57.10 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=34.8
Q ss_pred CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEec
Q 011684 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117 (479)
Q Consensus 81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~ 117 (479)
++|++|++|+.++.||+-|+..+|.||.+|.|.++.-
T Consensus 48 e~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~ 84 (131)
T COG0509 48 EVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNE 84 (131)
T ss_pred CCCCeecCCCeEEEEEeeeeeccccCCCceeEEEech
Confidence 7899999999999999999999999999999988763
No 84
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.58 E-value=0.0036 Score=53.08 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=42.5
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
.+.+| |. ..-|.-.+-.|++||+|.+||.|++.+ +-+...|.|+.+|+|..|.
T Consensus 29 ~v~ip-L~--qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 29 KVVIP-LR--QHIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred EEEEE-Cc--ccCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 44455 32 334666789999999999999999997 4668899999999999875
No 85
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.54 E-value=0.0043 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.5
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|+||..|+|.++++++||.|..|++|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5999999999999999999999999999997654
No 86
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.41 E-value=0.0059 Score=60.04 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.6
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+.|+||++|+|..+.+.+|+.|..|++|+.|.+..
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 45899999999999999999999999999987643
No 87
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.41 E-value=0.013 Score=61.60 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=30.1
Q ss_pred eEEEcCCCeEEEEEec-CCCCeecCCCeEEEEecC
Q 011684 102 MDVETFYDGILAAIVV-PEGESAPVGAAIGILAET 135 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~-~~g~~v~~G~~l~~i~~~ 135 (479)
..|+||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus 272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE 306 (423)
T ss_pred cEEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence 3599999999999876 799999999999999754
No 88
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=96.40 E-value=0.011 Score=61.04 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.3
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|+||.+|+|.+..+..|+.|..|++|+.+.+.+
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~ 243 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD 243 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence 355999999999999999999999999999987644
No 89
>PRK06748 hypothetical protein; Validated
Probab=95.90 E-value=0.014 Score=47.62 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
.|.||..|+|.++++++||.|..|++|++|+.
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 38999999999999999999999999999987
No 90
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.90 E-value=0.026 Score=57.12 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=48.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe---cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES---DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet---~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
+=+.+..++.||.|++||+|++|=. +....+|.||.+|+|.. ....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 4467788999999999999999964 45677899999999954 4566788999999876
No 91
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.65 E-value=0.033 Score=57.89 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=47.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
.|=+.+++++.||.|++||+|++|-. +....+|.||.+|+|. .....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~--~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLF--ARASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEE--EecCCccccCCCeEEEe
Confidence 35577899999999999999999864 3345557999999994 45677788999998876
No 92
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.56 E-value=0.047 Score=55.72 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=47.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence 4477889999999999999999865 34567899999999954 34445688899988875
No 93
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.55 E-value=0.046 Score=55.01 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=44.8
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 75 IVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
+.++.++.||.|++||+|+.|.. .....+|+||.+|+|.. ....-.|..|+.|+.|
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI 286 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence 45679999999999999999964 23347899999999944 4566678888888876
No 94
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=95.51 E-value=0.3 Score=52.40 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=35.1
Q ss_pred EEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhC
Q 011684 284 RVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQH 323 (479)
Q Consensus 284 ~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~ 323 (479)
+....|+-+.+.++++.+|++|+|++.+|..+++.||.+.
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~~ 290 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSKV 290 (480)
T ss_pred EEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4566888888999999999999999999999999999963
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.40 E-value=0.025 Score=43.04 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=29.3
Q ss_pred EEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 104 VETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 104 v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
|.||.+|+|.++++++|+.|..|++|+.++.
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 6899999999999999999999999999974
No 96
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.40 E-value=0.033 Score=43.57 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.3
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|.||..|+|.++++++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5899999999999999999999999999997644
No 97
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.16 E-value=0.06 Score=55.17 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=46.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet----~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.. ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 3456788999999999999999964 23467899999999965 4556788889988876
No 98
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.03 E-value=0.034 Score=49.96 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=33.0
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|+||..|++.+++|++||.|..||.||.|+...
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMK 105 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMK 105 (140)
T ss_pred CceEecCcceEEEEEeeccCCEEcCCCEEEEEEeee
Confidence 467999999999999999999999999999998654
No 99
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.99 E-value=0.035 Score=46.65 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=28.6
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 378999999999999999999999999988765
No 100
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.80 E-value=0.052 Score=55.22 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=46.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEec---ceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESD---KADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~---K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
++=+++.+|+.||+|++||+|+.|-.. +...||+|+.+|+|..+. ---.|..|+.++.+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeeec
Confidence 345899999999999999999988764 889999999999997663 123345556666554
No 101
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.72 E-value=0.042 Score=49.72 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=35.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EEcCCCeEEEEEe
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV 116 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-v~ap~~G~v~~i~ 116 (479)
.||..+-..+.+||.|.+||.|+.|.|-|-++. ++||.+|+|.-+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 367788899999999999999999999999887 9999999997654
No 102
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.54 E-value=0.039 Score=54.23 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecce--eeEEEcCCCeEEEEEec
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKA--DMDVETFYDGILAAIVV 117 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~--~~~v~ap~~G~v~~i~~ 117 (479)
|..-+.+|+|||+|++||+|++ ||- .+-+.||.+|+|.+|.-
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 4446899999999999999997 665 45589999999998764
No 103
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.22 E-value=0.085 Score=46.75 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=32.9
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 567999999999999999999999999999997643
No 104
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.22 E-value=0.1 Score=52.48 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=40.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAI 129 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l 129 (479)
+=+.+.+++.||.|++||+|++|-. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 4577888999999999999999843 3446789999999996543 33455555554
No 105
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=94.17 E-value=0.079 Score=42.04 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred EEEcCCCeEEEE------EecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAA------IVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~------i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+|++|..|.+.. +++++|+.|..|++|+.|+...
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence 678888887655 9999999999999999997654
No 106
>PRK07051 hypothetical protein; Validated
Probab=93.64 E-value=0.096 Score=42.26 Aligned_cols=26 Identities=19% Similarity=0.606 Sum_probs=24.2
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
..|+|.+|++++||.|+.||+|++++
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 45999999999999999999999985
No 107
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.57 E-value=0.074 Score=53.11 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=25.8
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
..|.++..|+|.+|+|++|+.|..|++|+.|.+..-.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~ 38 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTDYE 38 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HHHH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeeccc
Confidence 4789999999999999999999999999999865533
No 108
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.54 E-value=0.17 Score=52.13 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=36.4
Q ss_pred EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+.||.+ .+.|.++.+|+|.++++++|+.|..|++|+.|....
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~ 83 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRP 83 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence 445554 688999999999999999999999999999997654
No 109
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.35 E-value=0.14 Score=46.76 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.4
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999996543
No 110
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=93.30 E-value=0.13 Score=52.41 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.9
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.+.|.++.+|+|.++++++|+.|..|++|+.|+..+-
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~ 78 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTNA 78 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchHH
Confidence 6889999999999999999999999999999976543
No 111
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.12 E-value=0.27 Score=52.14 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=44.8
Q ss_pred EcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|..|++|+.|.+.+-
T Consensus 66 ~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~ 123 (415)
T PRK11556 66 TATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPF 123 (415)
T ss_pred EEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHH
Confidence 3444444333445667776 356889999999999999999999999999999976543
No 112
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.98 E-value=0.3 Score=58.06 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=58.9
Q ss_pred ceeEEEecCCCCCCCc----------eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecC
Q 011684 56 SKIREIFMPALSSTMT----------EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV 125 (479)
Q Consensus 56 ~~~~~i~~P~l~~~~~----------eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~ 125 (479)
.+...|++-.+|+... .|+..++.++.|+.+..++.....+. .-...|.||..|+|.++++++||.|..
T Consensus 1020 g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~ 1098 (1143)
T TIGR01235 1020 GKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNK 1098 (1143)
T ss_pred CcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCC
Confidence 3445555555554332 25677888888888887776554432 224569999999999999999999999
Q ss_pred CCeEEEEecCh
Q 011684 126 GAAIGILAETE 136 (479)
Q Consensus 126 G~~l~~i~~~~ 136 (479)
|++|++|+...
T Consensus 1099 Gd~L~~iEamK 1109 (1143)
T TIGR01235 1099 GDPLVVLEAMK 1109 (1143)
T ss_pred CCEEEEEEecc
Confidence 99999998644
No 113
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=92.92 E-value=0.33 Score=50.76 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=45.1
Q ss_pred EcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.++.|+....-+....|+..+ ..+|.++.+|+|.++++++|+.|..|++|+.|++.+
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~ 96 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence 344555444555667777554 678999999999999999999999999999997654
No 114
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.84 E-value=0.17 Score=51.62 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=36.5
Q ss_pred EEEecceeeEEEcCCC---eEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 94 VVESDKADMDVETFYD---GILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 94 ~vet~K~~~~v~ap~~---G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|+...-...|.++.+ |+|.+|+|++|+.|..|++|+.|.+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 4454444567899999 999999999999999999999998754
No 115
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.32 E-value=0.13 Score=51.35 Aligned_cols=28 Identities=18% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
.|.|.+++|++||.|++||+|+++..-.
T Consensus 9 ~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 9 GGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp -EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred CeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 3999999999999999999999998543
No 116
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.99 E-value=0.3 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=33.0
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+..|.+|.+|+|.++++++|+.|..|++|+.+...+
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence 568999999999999999999999999999997654
No 117
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=91.80 E-value=0.19 Score=50.62 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=29.0
Q ss_pred EEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 92 VVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 92 l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
-+.|+. -+..|.++.+|+| ++++++|+.|..|++|+.+....
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 344554 4578999999999 99999999999999999997654
No 118
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.79 E-value=0.35 Score=50.23 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=42.5
Q ss_pred EEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 75 IVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+.-+.++.|+.-..=..-+.|+.. -...|.++.+|.|.++++++|+.|..|++|+.+...
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 333444444433222234455544 356899999999999999999999999999999654
No 119
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.53 E-value=0.18 Score=53.77 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
..|.--+.+|++||+|++||+|++-+. -...-|.||.+|+|..|.
T Consensus 36 ~~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 36 FVGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN 80 (447)
T ss_pred cCCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence 346667899999999999999998542 257889999999999994
No 120
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=91.53 E-value=0.45 Score=49.78 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=42.4
Q ss_pred cCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 80 v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
++.|+.-..-..-..|+.. -..+|.++.+|+|.++++++||.|..|++|+.|.+.+
T Consensus 43 v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~ 98 (385)
T PRK09578 43 VRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAP 98 (385)
T ss_pred EEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHH
Confidence 3334433333445666654 3679999999999999999999999999999996544
No 121
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.50 E-value=0.4 Score=51.42 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=34.6
Q ss_pred cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 98 DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 98 ~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
+.-...|.++..|+|.+|+|++||.|..|++|+.+.+...
T Consensus 56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3335678999999999999999999999999999976653
No 122
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=91.46 E-value=0.36 Score=50.71 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=34.2
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.+.|.++.+|+|.++++++|+.|+.|++|+.|++.+-
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~ 97 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDA 97 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHHH
Confidence 7889999999999999999999999999999976543
No 123
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=91.37 E-value=0.37 Score=48.99 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=33.0
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
+.|.++.+|+|.++++++||.|..|++|+.+++.+-
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~ 83 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY 83 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence 669999999999999999999999999999976553
No 124
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=91.09 E-value=0.2 Score=53.53 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=36.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
|.--+..|++||+|++||+|++.+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 455678999999999999999983 4468899999999998873
No 125
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.90 E-value=0.2 Score=51.04 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=32.7
Q ss_pred EEEcCCCCeecCCCeEEEEEecce--eeEEEcCCCeEEEEEec
Q 011684 77 SWIKSEGDVLSKGESVVVVESDKA--DMDVETFYDGILAAIVV 117 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet~K~--~~~v~ap~~G~v~~i~~ 117 (479)
.++|++||.|++||+|+| ||- .+-+.||.+|+|..|+-
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R 81 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR 81 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec
Confidence 578999999999999997 664 45689999999998863
No 126
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=90.78 E-value=2.3 Score=41.31 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.1
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVENP 474 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p 474 (479)
.-|-+.+||-++||.-...|+++|.+++++.
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~ 159 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGL 159 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhcc
Confidence 5567889999999999999999999887653
No 127
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.70 E-value=0.48 Score=50.21 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=33.5
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
...|.++.+|+|.+++|++|+.|..|++|+.|.+...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 4589999999999999999999999999999976543
No 128
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=90.65 E-value=0.3 Score=49.91 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.+.|.++..|+|.++++++||.|..|++|+.|....
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 678999999999999999999999999999997653
No 129
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=90.54 E-value=0.23 Score=55.93 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=40.2
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
.+.+| |.. +-|.-.+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 36 ~~~ip-l~q--hiG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 36 RLVIP-LKQ--HIGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred EEEEE-Ccc--CCCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 45555 332 33556679999999999999999653 3356889999999998863
No 130
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.53 E-value=0.42 Score=50.07 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=38.6
Q ss_pred EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
..|...+....|.++.+|+|.+++|++||.|..|++|+.+.....
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 355566777779999999999999999999999999999976543
No 131
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=90.34 E-value=0.22 Score=53.31 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
.|.--+.+|++||+|++||.|++-... ....|.||.+|+|+.|.
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 366678999999999999999965432 56889999999999994
No 132
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.18 E-value=0.84 Score=46.10 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe--cceeeEEEcCCCeEEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAI 115 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet--~K~~~~v~ap~~G~v~~i 115 (479)
+=|.+..++.||.|++||+|++|-. .....++.||.+|+|..+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3456677888888888888888753 122456788888888554
No 133
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.13 E-value=0.26 Score=39.38 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=19.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
-+.=+.++++.||.|++||+||+|=++
T Consensus 30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 30 PAVGIELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp TT-EEEESS-TTSEEBTTSEEEEEEES
T ss_pred cCcCeEecCcCcCEECCCCeEEEEEcC
Confidence 344468888999999999999888654
No 134
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=89.59 E-value=0.25 Score=44.87 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=36.2
Q ss_pred CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCC
Q 011684 81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119 (479)
Q Consensus 81 ~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~ 119 (479)
++|-.|.+||.++.||+-|+.-+|.+|.+|.|.+|.-+-
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 789999999999999999999999999999999997543
No 135
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=89.58 E-value=1.1 Score=47.04 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=36.8
Q ss_pred EEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 93 ~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|+. .-..+|.+..+|+|.++++++||.|..|++|+.|++.+
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 45554 34688999999999999999999999999999997654
No 136
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=89.31 E-value=1.3 Score=39.03 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=16.9
Q ss_pred ecCCCCeecCCCeEEEEec
Q 011684 116 VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 ~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|..|++|+.+.-
T Consensus 85 ~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 85 HVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EecCCCEEcCCCEEEEEcH
Confidence 6899999999999999853
No 137
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=88.91 E-value=0.95 Score=50.14 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.4
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
-+|.||..|+|.++++++||.|..|++|++++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 36999999999999999999999999999998654
No 138
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=88.62 E-value=1.4 Score=44.08 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=47.9
Q ss_pred EEEEEEEcCCCCeecCCCeE--EEEEe--cceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESV--VVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l--~~vet--~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
+=+....++.||.|++||+| ..+-. +....+|++|.+|+| +.....-.|..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 44678999999999999999 54432 233568999999999 5678888999999999875
No 139
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=88.34 E-value=1 Score=47.66 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred eEEEEEecc-eeeEEEcCCCeEEEEEe-cCCCCeecCCCeEEEEecCh
Q 011684 91 SVVVVESDK-ADMDVETFYDGILAAIV-VPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 91 ~l~~vet~K-~~~~v~ap~~G~v~~i~-~~~g~~v~~G~~l~~i~~~~ 136 (479)
..+.|+.+. -...|.++.+|+|.+++ +.+||.|..||+|+.|...+
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence 345555432 35679999999999998 99999999999999997543
No 140
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=88.25 E-value=8.1 Score=40.90 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred EEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCC-------C----
Q 011684 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAING-------G---- 353 (479)
Q Consensus 285 ~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~-------g---- 353 (479)
....+++..|.++.+ ..|.|++.+++-|++.+|.++ ++.+ | . ...+.+.+++.|.... |
T Consensus 232 ~~~~~~~~~l~~~a~---~~g~T~ndvllaa~~~al~~~--~~~~---~-~-~~~~~i~~~~pv~~R~~~~~~~~~N~~~ 301 (446)
T TIGR02946 232 AAQSLPLADVKAVAK---AFGVTINDVVLAAVAGALRRY--LEER---G-E-LPDDPLVAMVPVSLRPMEDDSEGGNQVS 301 (446)
T ss_pred EeeccCHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHH--HHHc---C-C-CCCCceEEEEeeeccccccCCCCCCEEE
Confidence 455677767655543 349999999999999999875 2211 1 1 1234477777776411 1
Q ss_pred eEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCC-------------CC-------------CCCCCCeEEEeecCCCCcc
Q 011684 354 LITPVLQDADKLDLYLLSQKWKELVEKARSKQL-------------QP-------------HEYNSGTFTLSNLGMFGVD 407 (479)
Q Consensus 354 l~~pvi~~a~~~sl~ei~~~~~~l~~~ar~~~l-------------~~-------------~d~~~~tftISnlg~~G~~ 407 (479)
.+...+. ....+..+..+++++....+++... -+ .....-++.|||+|.....
T Consensus 302 ~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvpg~~~~ 380 (446)
T TIGR02946 302 AVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVPGPREP 380 (446)
T ss_pred EEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCCCCCcc
Confidence 1111121 1233444444555554444443210 00 0011247889999754321
Q ss_pred ---------ceeecCCCCCceEEEeCcceEEEEEcCCCeEEEEEEEEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 408 ---------RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 408 ---------~ftpii~~~~~ail~vG~~~~~~v~~~~G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
.+.++.+......++++-.. -+| .|.+++++|-.++.. ..+|.+.|++.|+.
T Consensus 381 ~~~~g~~v~~~~~~~p~~~~~~l~~~~~s------y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~ 441 (446)
T TIGR02946 381 LYLAGAKLDELYPLSPLLDGQGLNITVTS------YNG------QLDFGLLADRDAVPD--PQELADALEAALEE 441 (446)
T ss_pred cEecCeeEEEeeccccccCCCeEEEEEEe------cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence 11222221111122222111 034 489999999988874 66777777776653
No 141
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=87.93 E-value=0.5 Score=43.23 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=23.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
..|+|.+|+++.||.|+.||+|++|+
T Consensus 131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 131 VAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 36899999999999999999999985
No 142
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.52 E-value=1.2 Score=39.44 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=40.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecceeeE-EEcCCCeEEEEE
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAI 115 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~-v~ap~~G~v~~i 115 (479)
.||-++-..+..|+.|.+||+++-|.|-|.++. +++|.+|+|.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 468889999999999999999999999999887 899999999654
No 143
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=87.49 E-value=0.6 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=24.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
..|+|++|+++.||.|..||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 46899999999999999999999885
No 144
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=87.30 E-value=1.3 Score=41.02 Aligned_cols=66 Identities=29% Similarity=0.410 Sum_probs=50.2
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE-------------------
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI------------------- 115 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i------------------- 115 (479)
..|.-| +. |+++.+. ++-|.|=. ||-+++.=++ ..|.||.+|+|..+
T Consensus 21 ~~i~aP-~~-----G~vi~L~-~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI 90 (169)
T PRK09439 21 IEIIAP-LS-----GEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 90 (169)
T ss_pred eEEEec-CC-----eEEEEhH-HCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 456666 33 7777765 55665554 8888876654 67899999998877
Q ss_pred ----------------ecCCCCeecCCCeEEEEec
Q 011684 116 ----------------VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 ----------------~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|..|++|+++.-
T Consensus 91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence 6899999999999999853
No 145
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.30 E-value=0.91 Score=48.10 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
|.|.+++|++||.|++||+|+.|+...
T Consensus 67 G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 67 GVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred eEEEEEECCCcCEECCCCEEEEECcHH
Confidence 999999999999999999999998653
No 146
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.27 E-value=0.87 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
|.|.+++|++||.|++||+|+.+...
T Consensus 68 G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 68 NAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred cEEEEEEcCCCCEecCCCEEEEECch
Confidence 99999999999999999999999754
No 147
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=87.24 E-value=0.79 Score=45.23 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.6
Q ss_pred eEEEcCCCeEEEE-------EecCCCCeecCCCeEEEEecChh
Q 011684 102 MDVETFYDGILAA-------IVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 102 ~~v~ap~~G~v~~-------i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
..|.||..|++.+ +++++||.|..|++|+.|+...-
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence 4589999999999 59999999999999999986543
No 148
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=86.99 E-value=1.3 Score=39.34 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCee----cCCCeEEEEEecceeeEEEcCCCeEEEEE---------------------------------
Q 011684 73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI--------------------------------- 115 (479)
Q Consensus 73 g~i~~w~v~~Gd~V----~~g~~l~~vet~K~~~~v~ap~~G~v~~i--------------------------------- 115 (479)
|+++.+. +.-|.+ --||-++..=++. .|.||++|+|..+
T Consensus 11 G~vi~l~-~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF 86 (132)
T PF00358_consen 11 GKVIPLE-EVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGF 86 (132)
T ss_dssp EEEEEGG-GSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTE
T ss_pred cEEEEhh-hCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcce
Confidence 6666543 455555 3467777665443 6889999999888
Q ss_pred --ecCCCCeecCCCeEEEEec
Q 011684 116 --VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 --~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|..|++|+.+.-
T Consensus 87 ~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 87 ETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp EESS-TTSEE-TTEEEEEE-H
T ss_pred EEEEeCCCEEECCCEEEEEcH
Confidence 7889999999999999853
No 149
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=86.41 E-value=0.56 Score=50.31 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=41.6
Q ss_pred EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe
Q 011684 59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116 (479)
Q Consensus 59 ~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~ 116 (479)
.++.+| |... -|.=...+|++||+|.+||+|.+=+. ...-+.||.+|+|.+|.
T Consensus 31 ~~~~iP-l~qh--~g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 31 QRALIP-LKQH--IGAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEe-eecc--cCCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 345556 3322 23336789999999999999998765 88999999999999986
No 150
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.04 E-value=1.9 Score=37.79 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=17.1
Q ss_pred EecCCCCeecCCCeEEEEe
Q 011684 115 IVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 115 i~~~~g~~v~~G~~l~~i~ 133 (479)
.++++||.|..|++|+++.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEecCCCEEcCCCEEEEEc
Confidence 3789999999999999985
No 151
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=85.96 E-value=3 Score=41.84 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=37.5
Q ss_pred CCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 88 KGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 88 ~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
.-.....++. .-..+|.++..|.|.++++++||.|..|++|+.+++.
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3344445554 3344788889999999999999999999999999873
No 152
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=85.81 E-value=1.2 Score=47.71 Aligned_cols=28 Identities=25% Similarity=0.556 Sum_probs=25.7
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
..|+|.+|++++||.|..||+|+.|+.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 4699999999999999999999999853
No 153
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=85.53 E-value=0.74 Score=37.78 Aligned_cols=23 Identities=26% Similarity=0.697 Sum_probs=18.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 011684 75 IVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
=++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 35699999999999999999984
No 154
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=85.19 E-value=1.8 Score=40.81 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=42.1
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG 130 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~ 130 (479)
++|+. .+++|+.|++||.+..++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 34544 45899999999999999966 6777777766 277899999999999653
No 155
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=84.90 E-value=1.9 Score=47.88 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.7
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|.||..|+|.++++++||.|..|++|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 457999999999999999999999999999997544
No 156
>PF13437 HlyD_3: HlyD family secretion protein
Probab=84.39 E-value=1.8 Score=36.07 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
..|.|..|.+++|+.|..|+.|+.|..+
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 3599999999999999999999999853
No 157
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=84.15 E-value=2.1 Score=40.92 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=42.9
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCC-eEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGA-AIGI 131 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~-~l~~ 131 (479)
++|+. .+++|+.|++||.+..++-. .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 45555 46899999999999999976 6677777766 278899999999998 4444
No 158
>PRK09294 acyltransferase PapA5; Provisional
Probab=84.00 E-value=25 Score=36.85 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=28.5
Q ss_pred EEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhC
Q 011684 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQH 323 (479)
Q Consensus 285 ~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~ 323 (479)
....+|-....++++..++.|+|++.+++-|++.++.+.
T Consensus 209 ~~~~l~~~~~~~L~~~a~~~~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 209 TRCRLSKAQTSSLAAFGRRHRLTVNALVSAAILLAEWQL 247 (416)
T ss_pred eEEEeCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 345677555555566666679999999999998887654
No 159
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=83.88 E-value=1.5 Score=48.65 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.9
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
..|.||..|.|.++++++||.|..|++|+.++...-
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm 553 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM 553 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 479999999999999999999999999999986553
No 160
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=83.29 E-value=3.3 Score=46.05 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.7
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|.||..|+|.++.+++|+.|..|++|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 467999999999999999999999999999997543
No 161
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=82.64 E-value=2.5 Score=38.63 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=16.8
Q ss_pred ecCCCCeecCCCeEEEEe
Q 011684 116 VVPEGESAPVGAAIGILA 133 (479)
Q Consensus 116 ~~~~g~~v~~G~~l~~i~ 133 (479)
++++||.|..||+|.++.
T Consensus 92 ~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 92 LVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EeeCCCEEccCCEEEEEC
Confidence 889999999999999984
No 162
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.50 E-value=2.3 Score=43.37 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=26.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
..|+|.++++++||.|..|++|+.|+.++
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 45999999999999999999999998654
No 163
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=81.78 E-value=2.8 Score=43.43 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=34.2
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhhH
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEV 139 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~~ 139 (479)
.+.|-+..+|+|.++.+++++.|..|++|+.|++..-..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~y~~ 91 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRDYRA 91 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHHHHH
Confidence 356889999999999999999999999999998766443
No 164
>PRK12784 hypothetical protein; Provisional
Probab=80.86 E-value=1.7 Score=34.64 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=34.7
Q ss_pred cceeeE-EEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 98 DKADMD-VETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 98 ~K~~~~-v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
||..+| |.||+-|+|.++++.+++.|-.=++|+.|...+..
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~ 42 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGE 42 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCc
Confidence 344444 99999999999999999999999999999865543
No 165
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=80.06 E-value=1.5 Score=38.54 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
+|+--++++++||+|++||+|+++-.+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 477889999999999999999988643
No 166
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=80.02 E-value=4.6 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=26.9
Q ss_pred eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEE
Q 011684 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVV 95 (479)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~v 95 (479)
...+|.-| ..|+|++|+++.|+.|..|+.|+.|
T Consensus 41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 34455555 3499999999999999999999875
No 167
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=79.64 E-value=2.2 Score=46.29 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=31.4
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.+.||..|+|+.+.|++|+.|..|++|++++...
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMK 610 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMK 610 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeEehh
Confidence 4999999999999999999999999999997644
No 168
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=79.52 E-value=3 Score=39.61 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=45.8
Q ss_pred ceEEEEEEEc-CCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684 71 TEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (479)
Q Consensus 71 ~eg~i~~w~v-~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~ 131 (479)
.-|+|+-+.. ++|+.|++||.+..++- -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 3466666654 69999999999999986 66666655555433 789999999999999873
No 169
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=79.39 E-value=1.7 Score=43.72 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=25.3
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 449999999999999999999999986
No 170
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=79.25 E-value=1.6 Score=38.23 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
+|+--+++|++||+|++||+|+++-.+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 477789999999999999999998644
No 171
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=78.42 E-value=3.9 Score=37.31 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=44.6
Q ss_pred eEEEecCCCCCCC--ceEEEEEEEcCCCCeecCCCeEEEEEecce--------eeEEEcCCCeEEEEEecCCCCeecCCC
Q 011684 58 IREIFMPALSSTM--TEGKIVSWIKSEGDVLSKGESVVVVESDKA--------DMDVETFYDGILAAIVVPEGESAPVGA 127 (479)
Q Consensus 58 ~~~i~~P~l~~~~--~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~--------~~~v~ap~~G~v~~i~~~~g~~v~~G~ 127 (479)
..+|.+- +|-+- -+|+--+-+|++||+|++||+|+++--++. +.-|-+-.+-+-.-+....+..+..|+
T Consensus 70 GvEiLiH-iGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~ 148 (156)
T COG2190 70 GVEILIH-IGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGE 148 (156)
T ss_pred CcEEEEE-eceeeEEECCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCC
Confidence 4555555 44321 258889999999999999999999876543 222222222221122233344777787
Q ss_pred eEEEE
Q 011684 128 AIGIL 132 (479)
Q Consensus 128 ~l~~i 132 (479)
.++.+
T Consensus 149 ~~~~~ 153 (156)
T COG2190 149 TLLLV 153 (156)
T ss_pred eeEEE
Confidence 77664
No 172
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=77.79 E-value=3.8 Score=43.50 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.6
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
..|+|.++++++||.|..|++|++|+..
T Consensus 94 ~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 94 ASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 4699999999999999999999999753
No 173
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=77.70 E-value=2.9 Score=50.30 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.8
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|.||..|+|.++++++||.|+.|++|+.|+...
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 34999999999999999999999999999997644
No 174
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=77.64 E-value=2.7 Score=43.10 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=31.0
Q ss_pred eeEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
+.+.|.+|.-- .|+|.+++|++||+|+-|+.|+.|+..
T Consensus 112 DK~tv~V~sP~----sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 112 DKTTVEVPSPA----SGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cceeeeccCCC----cceeeEEecCCCCcccCCceeEEecCC
Confidence 34556666543 399999999999999999999999865
No 175
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=77.36 E-value=4.1 Score=37.80 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.0
Q ss_pred eEEEecCCCCCC-C-ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 58 IREIFMPALSST-M-TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 58 ~~~i~~P~l~~~-~-~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
..+|.+- +|-+ . -+|+--+++|++||+|++||+|+++.-+.
T Consensus 85 G~eiLIH-iGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 85 GVELFVH-FGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CcEEEEE-EeecccccCCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4455554 3332 2 25788999999999999999999987543
No 176
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=77.36 E-value=2.5 Score=44.72 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=27.1
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecChh
Q 011684 108 YDGILAAIVVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
.+|.|.+|++++||.|..|++|++|+.+..
T Consensus 15 ~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa 44 (404)
T COG0508 15 TEGTIVEWLKKVGDKVKEGDVLVEVETDKA 44 (404)
T ss_pred ceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence 479999999999999999999999986553
No 177
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.16 E-value=7.7 Score=46.50 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=32.6
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|.||..|+|.++++++||.|..|++|+.++...
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamK 1111 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMK 1111 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 356999999999999999999999999999997643
No 178
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=75.84 E-value=3.1 Score=46.44 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=45.2
Q ss_pred eEEEecCCCCCC-C-ceEEEEEEEcCCCCeecCCCeEEEEEecce--------eeEEEcCCCeEEEEEecCCCCeecCCC
Q 011684 58 IREIFMPALSST-M-TEGKIVSWIKSEGDVLSKGESVVVVESDKA--------DMDVETFYDGILAAIVVPEGESAPVGA 127 (479)
Q Consensus 58 ~~~i~~P~l~~~-~-~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~--------~~~v~ap~~G~v~~i~~~~g~~v~~G~ 127 (479)
..++.+- +|-+ . -+|+--+.+|++||+|++||+|+++.-++. ++-|-.-. .....+....+..+..|+
T Consensus 527 G~eiliH-iGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~-~~~~~~~~~~~~~~~~~~ 604 (610)
T TIGR01995 527 GIEILIH-VGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNT-KDFLDVIPTDKETVTAGD 604 (610)
T ss_pred CcEEEEE-eccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEcc-ccccceeeccCCcccCCC
Confidence 4555555 3332 2 267888999999999999999999976543 11121111 122233445556788888
Q ss_pred eEEEE
Q 011684 128 AIGIL 132 (479)
Q Consensus 128 ~l~~i 132 (479)
.+..+
T Consensus 605 ~~~~~ 609 (610)
T TIGR01995 605 VLLRL 609 (610)
T ss_pred eeEEe
Confidence 77654
No 179
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=74.90 E-value=3.5 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=22.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVV 95 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~v 95 (479)
.|++.++++++|+.+..|+.|+.|
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 488999999999999999999875
No 180
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=74.90 E-value=7.2 Score=42.15 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=37.0
Q ss_pred EEEEecceeeEEEcCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCh
Q 011684 93 VVVESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 93 ~~vet~K~~~~v~ap~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..+..-+-..+|.|+.+|+|..| +++.||.|..|++|++|..+.
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 33455677899999999999988 688999999999999998443
No 181
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=73.18 E-value=6.3 Score=44.05 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=47.4
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE--------------------------------
Q 011684 72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------------------- 115 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i-------------------------------- 115 (479)
+|+++... ++-|.|=. ||-+++.=++ .+|.||.+|+|..+
T Consensus 486 ~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~g 561 (627)
T PRK09824 486 TGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKF 561 (627)
T ss_pred ceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCC
Confidence 48888766 77777765 7777766554 58999999999876
Q ss_pred ---ecCCCCeecCCCeEEEEec
Q 011684 116 ---VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 ---~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|+.||+|++++.
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEcH
Confidence 7889999999999999853
No 182
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=73.16 E-value=4.1 Score=43.16 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=26.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
..|+|.++++++||.|..|++|++|+.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 52 AAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 56999999999999999999999998653
No 183
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=72.82 E-value=4.4 Score=42.88 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=25.9
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
.+|+|.+|++++||.|..|++|++|+.+
T Consensus 50 ~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 50 ADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5699999999999999999999999854
No 184
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=72.80 E-value=8.2 Score=38.44 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
..|+.|.. +|+.|++||.+..++-. .++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 34555544 59999999999999974 6666655543 44 6679999999999999754
No 185
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=72.63 E-value=7.6 Score=43.54 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=49.7
Q ss_pred eEEEecCCCCCCCceEEEEEEEcCCCCeec----CCCeEEEEEecceeeEEEcCCCeEEEEE------------------
Q 011684 58 IREIFMPALSSTMTEGKIVSWIKSEGDVLS----KGESVVVVESDKADMDVETFYDGILAAI------------------ 115 (479)
Q Consensus 58 ~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~----~g~~l~~vet~K~~~~v~ap~~G~v~~i------------------ 115 (479)
..++.-| + +|+++... ++-|.|= -||-+++.=++ ..|.||.+|+|..+
T Consensus 498 ~~~v~aP-~-----~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiL 567 (648)
T PRK10255 498 IAELVSP-I-----TGDVVALD-QVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIV 567 (648)
T ss_pred ceEEEec-C-----CcEEEEcc-cCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEE
Confidence 3456666 3 38888776 4444443 37888876654 58999999999877
Q ss_pred -----------------ecCCCCeecCCCeEEEEec
Q 011684 116 -----------------VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 -----------------~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|+.||+|++++-
T Consensus 568 IHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 568 VHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred EEeccchhccCCCCceEEecCCCEEcCCCEEEEEcH
Confidence 6899999999999999853
No 186
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=72.58 E-value=7.7 Score=43.31 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=46.0
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEecceeeEEEcCCCeEEEEE--------------------------------
Q 011684 72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------------------- 115 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~----g~~l~~vet~K~~~~v~ap~~G~v~~i-------------------------------- 115 (479)
+|+++... ++-|.|=. ||-+++.=++ .+|.||.+|+|..+
T Consensus 470 ~G~~~~l~-~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPLN-EVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeHh-hCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 47777764 66666655 7777765543 58999999998877
Q ss_pred ---ecCCCCeecCCCeEEEEec
Q 011684 116 ---VVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 116 ---~~~~g~~v~~G~~l~~i~~ 134 (479)
++++||.|+.||+|++++.
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred eEEEecCcCEEcCCCEEEEecH
Confidence 7899999999999999854
No 187
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=71.75 E-value=2.5 Score=37.57 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=27.8
Q ss_pred eeEEEecCCCCCCC--ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 57 KIREIFMPALSSTM--TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 57 ~~~~i~~P~l~~~~--~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
+..+|.+- +|-+. -+|+--+|+|++||+|++||+|+++-.++
T Consensus 66 ~G~eiLiH-iGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 66 NGVEILIH-IGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TSEEEEEE--SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCCEEEEE-EccchhhcCCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 34555555 44332 25778899999999999999999986543
No 188
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=71.01 E-value=4.7 Score=45.03 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=39.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecce--------eeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKA--------DMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~--------~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
+|+--+++|++||+|++||+|+++.-++. ++-|-...+. ...+....+..+..|+++..+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~-~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDD-YTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEcccc-ccceeeccCCcccCCCeEEEe
Confidence 57778999999999999999999976432 2222222222 122233445568888877765
No 189
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=70.49 E-value=5.4 Score=42.37 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=26.5
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
..|+|.+|++++||.|..|++|++|+.++
T Consensus 48 ~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 48 YKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred CCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 56999999999999999999999998654
No 190
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=69.17 E-value=12 Score=40.53 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=35.7
Q ss_pred EEecceeeEEEcCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCh
Q 011684 95 VESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 95 vet~K~~~~v~ap~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+-.-+-..+|.|+.+|+|..| +++.||.|..|++|++|....
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAES 473 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCC
Confidence 445677899999999999988 678999999999999998443
No 191
>PRK04350 thymidine phosphorylase; Provisional
Probab=69.09 E-value=12 Score=40.41 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=36.2
Q ss_pred EEecceeeEEEcCCCeEEEEE------------------------ecCCCCeecCCCeEEEEecCh
Q 011684 95 VESDKADMDVETFYDGILAAI------------------------VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 95 vet~K~~~~v~ap~~G~v~~i------------------------~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+..-+-..+|.|+.+|+|..| +++.||.|..|++|++|....
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAES 464 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCC
Confidence 455677899999999999988 678999999999999998443
No 192
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=68.97 E-value=12 Score=39.94 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=36.2
Q ss_pred EEecceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecChhh
Q 011684 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 95 vet~K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
+-.-+-..+|.|+.+|+|..| +++.||.|..|++|++|..+++.
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~ 403 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANREN 403 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHH
Confidence 345667889999999999988 67889999999999999854433
No 193
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=68.36 E-value=13 Score=39.67 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=33.6
Q ss_pred ecceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecC
Q 011684 97 SDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 97 t~K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~ 135 (479)
.-+-..+|.|+.+|+|.+| +++.||.|..|++|++|...
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECC
Confidence 3566888999999999888 67889999999999999843
No 194
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=68.34 E-value=7.6 Score=38.31 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
+--|+||.+|++.. .++.||.|..|++|+.|.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45699999999965 8999999999999999965
No 195
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=65.71 E-value=15 Score=39.19 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=34.3
Q ss_pred ecceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecCh
Q 011684 97 SDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 97 t~K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..+-..+|.|+.+|+|..| +++.||.|..|++|++|....
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCC
Confidence 4677889999999999887 678899999999999998443
No 196
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=65.39 E-value=25 Score=42.47 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=45.6
Q ss_pred EEEcCCCCeecCCCeEEEEEec-------ceeeEEEcCCCeEEEEE----------------------------------
Q 011684 77 SWIKSEGDVLSKGESVVVVESD-------KADMDVETFYDGILAAI---------------------------------- 115 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet~-------K~~~~v~ap~~G~v~~i---------------------------------- 115 (479)
-++|+.|+.|+++|+|+++-+. |+.=.|.|+.+|.|.+-
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~V~h~~rtrhGNva~ll~ktGhLWILSG~vynl 483 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPEEKTDRQGNTTRKAQRGGLLWVLSGDVYNL 483 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCCccccccccCCceeEEeccCcEEEEEeCCeEee
Confidence 5799999999999999999863 45567999999987542
Q ss_pred ------ecCCCCeecCCCeEEEE
Q 011684 116 ------VVPEGESAPVGAAIGIL 132 (479)
Q Consensus 116 ------~~~~g~~v~~G~~l~~i 132 (479)
+++.||.|..+++|++.
T Consensus 484 p~~S~LfvKdqDqV~~~sVLAEt 506 (1331)
T PRK02597 484 PPGAEPVVSNGDRVEEGDVLAET 506 (1331)
T ss_pred CCCceEEEeCCCEEccCceEEEE
Confidence 56778888888888865
No 197
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=65.29 E-value=7.7 Score=38.49 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=40.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i 132 (479)
|.|+ | ..+|+.|++||.+..++-. .++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 4554 3 3579999999999999877 777766555422223567889999999988753
No 198
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=65.09 E-value=13 Score=30.52 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=34.0
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 70 ~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+..|+|+.+.-.. ...-...|+...-...+- |-+..+.++.||.|..|+.|+.+...
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y----~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVY----GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEE----EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEE----eccccccceecccccCCCEEEecCCC
Confidence 4578887776532 223444455543322222 22556679999999999999999743
No 199
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=64.03 E-value=12 Score=47.98 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=18.1
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 011684 77 SWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~ve 96 (479)
.++|++|+.|++||+||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 68999999999999999864
No 200
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=63.57 E-value=9.8 Score=38.36 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.7
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..-|+||.+|.+ +..++.|+.|..||+|++|.+.-
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 567999999998 56799999999999999998754
No 201
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=62.96 E-value=9.4 Score=40.82 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=26.2
Q ss_pred ceEEEEEEEcCCCCe-ecCCCeEEEEEecc
Q 011684 71 TEGKIVSWIKSEGDV-LSKGESVVVVESDK 99 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~-V~~g~~l~~vet~K 99 (479)
..|+|.+|++++||. |..|++|++|+.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 459999999999999 99999999998654
No 202
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=62.87 E-value=15 Score=38.97 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=35.4
Q ss_pred EEecceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEecCh
Q 011684 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 95 vet~K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+-..+-..+|.|+.+|+|..| +.+.||.|..|++|++|....
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCC
Confidence 345677899999999999987 678899999999999998543
No 203
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=62.09 E-value=14 Score=42.00 Aligned_cols=34 Identities=12% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|-||..|+|.++.|++|+.|+.|++|+.++...
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMK 1114 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMK 1114 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehhhhh
Confidence 3889999999999999999999999999997544
No 204
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=61.48 E-value=8.1 Score=38.60 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
--..|++++||.|+.||+|+++|
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEe
Confidence 44578888888888888888876
No 205
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.12 E-value=12 Score=37.65 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=30.4
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...|+||.+|.+. ..++.||.|..|++|+.|.+..
T Consensus 219 ~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 219 SVWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred CeEEecCCCeEEE-EecCCCCEECCCCEEEEEECCC
Confidence 3579999999985 5899999999999999997743
No 206
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.99 E-value=11 Score=38.10 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
..-|+||.+|.+ ...++.|+.|..||+|++|.+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCC
Confidence 457999999999 5578999999999999999874
No 207
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=60.50 E-value=10 Score=42.54 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
+|+--+.+|++||+|++||+|+++.-++
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 5777899999999999999999997654
No 208
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.49 E-value=13 Score=37.30 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=30.6
Q ss_pred eeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 100 ~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
...-++||..|.+ ...++.|+.|..|++|++|.+.-
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 4466899999998 56789999999999999997643
No 209
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=59.35 E-value=13 Score=38.78 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 102 ~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.-|+||..|.+ ...++.|+.|..|++|++|.+..
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCC
Confidence 34999999998 56789999999999999998654
No 210
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=58.93 E-value=7.6 Score=43.11 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=30.9
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.|-||..|+|.+|.|++|+.|..|++|+.+....
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAMK 1141 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAMK 1141 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeecce
Confidence 4889999999999999999999999999986543
No 211
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=58.73 E-value=11 Score=40.25 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=28.0
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
+-|+++++|.++||.-+..|++.+.+++..
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999998865
No 212
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=58.18 E-value=11 Score=39.88 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
+-|+++++|.++||.-+..|++.+.+++..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998865
No 213
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=58.00 E-value=19 Score=28.73 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=22.1
Q ss_pred CCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 107 FYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 107 p~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
+..|+. ++++.||.|..|++|++|....+.
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCChH
Confidence 345654 689999999999999999765543
No 214
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=57.70 E-value=11 Score=36.98 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=37.3
Q ss_pred CCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684 83 GDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (479)
Q Consensus 83 Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~ 131 (479)
|+.|++||.+..++- -.++.+--|.+-+--...+++|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 999999999999997 467766655432222567899999999999864
No 215
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=57.50 E-value=15 Score=37.81 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.7
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
..-|+||.+|.+ ...++.|+.|..|++|++|.+-
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCCEeCCCCEEEEEECC
Confidence 345999999999 4689999999999999999873
No 216
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=56.18 E-value=13 Score=39.55 Aligned_cols=30 Identities=10% Similarity=0.372 Sum_probs=28.0
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
+-|+++++|.++||.-+..|++.+.+++..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999998865
No 217
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=56.15 E-value=14 Score=39.94 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.6
Q ss_pred CceEEEEEEEcCCCC-eecCCCeEEEEEec
Q 011684 70 MTEGKIVSWIKSEGD-VLSKGESVVVVESD 98 (479)
Q Consensus 70 ~~eg~i~~w~v~~Gd-~V~~g~~l~~vet~ 98 (479)
..+|+|.+|++++|+ .|+.|++|++|+.+
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 357999999999996 79999999999854
No 218
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=55.99 E-value=12 Score=37.39 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
+--++|++++||.|++||+|++++
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 556789999999999999988887
No 219
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.44 E-value=23 Score=36.07 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.0
Q ss_pred ceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 99 KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 99 K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+...-|+||..|.+ .-.++.|+.|+.|++|++|.+.
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECC
Confidence 34467999999998 5679999999999999999875
No 220
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=55.38 E-value=17 Score=38.18 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=38.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEE-------ecCCCCeecCCCeEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI-------VVPEGESAPVGAAIGI 131 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i-------~~~~g~~v~~G~~l~~ 131 (479)
+|+-..+.+.|.... +...++.--+|-|-.+|+|.++ +|++||.|..||+|..
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 577777777665433 3333455577889999999988 4577899999999986
No 221
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.68 E-value=13 Score=37.37 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=17.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 011684 76 VSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 76 ~~w~v~~Gd~V~~g~~l~~ve 96 (479)
++|++++|+.|++||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 688888888888888888876
No 222
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=54.50 E-value=1.2e+02 Score=36.82 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.3
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHh
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIV 471 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~l 471 (479)
--+-+++||-++||+-.+-|+++|.++.
T Consensus 133 ~~l~~~~HHii~DG~S~~~l~~el~~~Y 160 (1296)
T PRK10252 133 WYWYQRYHHLLVDGFSFPAITRRIAAIY 160 (1296)
T ss_pred EEEEEecCceeEccccHHHHHHHHHHHH
Confidence 3456899999999999999999998765
No 223
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=54.50 E-value=14 Score=38.77 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=25.7
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg 176 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRG 176 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcC
Confidence 678999999999999999999999998865
No 224
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=53.05 E-value=16 Score=38.61 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.4
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
..|+|.++++++|+.|..|++|+.|+.+.
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998654
No 225
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=52.72 E-value=2.5e+02 Score=29.89 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=58.4
Q ss_pred EEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEe------C-------
Q 011684 285 VGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI------N------- 351 (479)
Q Consensus 285 ~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~------~------- 351 (479)
....|+-+++..+....+..|.|++++++.|+.+--..+--. . + -.++.+.++++|+. .
T Consensus 218 ~~~~I~~~ef~~ikay~k~~gaTiNDiilaa~~~fr~~y~~~---~-~----k~~~~lsi~~~VDlRkyl~sk~~sI~Nl 289 (439)
T COG4908 218 EKTTIPSDEFKKIKAYAKVHGATINDIILAALLKFRLLYNTT---H-E----KANNYLSIDMPVDLRKYLPSKEESISNL 289 (439)
T ss_pred EEEecCHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhhh---c-h----hhcCeeeeceeeehhhhccccccceecc
Confidence 466888888877777777679999999999885432221111 0 1 14566667777763 1
Q ss_pred CCeEEeEEecCCCCCHHHHHHHHHHHHH
Q 011684 352 GGLITPVLQDADKLDLYLLSQKWKELVE 379 (479)
Q Consensus 352 ~gl~~pvi~~a~~~sl~ei~~~~~~l~~ 379 (479)
.+....+|+..+..||+...+.+++...
T Consensus 290 s~~~~i~I~~dd~~~fe~t~~~vk~~~~ 317 (439)
T COG4908 290 SSYLTIVINVDDVTDFEKTLEKVKGIMN 317 (439)
T ss_pred ceeEEEEEeccccccHHHHHHHHHhhcC
Confidence 1355678899888899988888776544
No 226
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.40 E-value=20 Score=35.72 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=33.6
Q ss_pred cCCCCeecC-CCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684 80 KSEGDVLSK-GESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131 (479)
Q Consensus 80 v~~Gd~V~~-g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~ 131 (479)
+..|+.|.+ |++|++.- .-+|++|++|.+ ++-....+..|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 456888988 99999842 378999999966 4456666668877664
No 227
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=52.30 E-value=12 Score=40.10 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=25.0
Q ss_pred CCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 68 STMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 68 ~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
.-+..+-=++|+++.||+|++||+||.|=+
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 345556668999999999999999999873
No 228
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.43 E-value=16 Score=36.83 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
.=++|++++||.|++||+|++++
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 35688888888888888888876
No 229
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.35 E-value=15 Score=36.91 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 011684 75 IVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
=++|++++||.|++||+|++++
T Consensus 62 ~v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 62 TIDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3678888888888888888765
No 230
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=50.96 E-value=16 Score=36.73 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=42.3
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEecceeeEEEcCCCeEEEE-EecCCCCeecCCCeEEEEec
Q 011684 74 KIVSWIKSE----GDVLSKGESVVVVESDKADMDVETFYDGILAA-IVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 74 ~i~~w~v~~----Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~-i~~~~g~~v~~G~~l~~i~~ 134 (479)
.++.|.... |..|++||.+..++-. .++.+--|.+ .+.. ..+.+|+.|..|+.|+.+.+
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~~ 287 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHITE 287 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCccC
Confidence 455565532 7899999999999874 6666555543 4432 34789999999999987643
No 231
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=50.93 E-value=14 Score=40.06 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 66 l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+|.-+..+-=+.++++.||+|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 46667777888999999999999999999863
No 232
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=50.86 E-value=16 Score=39.06 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=28.9
Q ss_pred EEEEEEEecccccchHHHHHHHHHHHHHhcCC
Q 011684 443 KMLVNVTADHRIIYGADLAAFLQTFSKIVENP 474 (479)
Q Consensus 443 ~m~lslt~DHRvvDG~~aa~Fl~~l~~~le~p 474 (479)
..-|.+.+||.+.||.-+..|.+.|-+.|++.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~ 171 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSL 171 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhc
Confidence 36678999999999999999999999999764
No 233
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=50.81 E-value=14 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEec
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESD 98 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~ 98 (479)
=+-+.+..|++||.|++||.|+.+...
T Consensus 49 y~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 49 YGHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred EeccccccceecccccCCCEEEecCCC
Confidence 344556679999999999999998743
No 234
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=50.14 E-value=14 Score=39.91 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=29.9
Q ss_pred EEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 104 VETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 104 v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+.+|..|+|.+++|+.|+.|..|+.|+.+....
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMK 636 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLIAMK 636 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEEecc
Confidence 789999999999999999999999999876543
No 235
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=49.93 E-value=18 Score=38.54 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=27.7
Q ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 444 MLVNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 444 m~lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 778999999999999999999999998764
No 236
>PRK04350 thymidine phosphorylase; Provisional
Probab=49.79 E-value=15 Score=39.77 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 66 l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+|.-+..+-=+.++++.||+|++||+|+.|=+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 56667778888999999999999999999863
No 237
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.69 E-value=17 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.1
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 011684 76 VSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 76 ~~w~v~~Gd~V~~g~~l~~ve 96 (479)
++|++++|+.|++||+|++++
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 788999999999998888876
No 238
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=49.16 E-value=17 Score=33.09 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=28.7
Q ss_pred CeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 84 DVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 84 d~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
=.+++|+-|+.++ .+|+..-+.+.+|+.|..|+.||.+.....+
T Consensus 74 ~~l~~G~~L~l~~-----------veG~~v~~i~~~G~rV~~gd~lA~v~T~KGe 117 (150)
T PF09891_consen 74 ILLKKGTELCLVP-----------VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGE 117 (150)
T ss_dssp EEE-TT-B-EEEE-----------EESSEEEESS-TSEEE-TT-EEEEEE-TTS-
T ss_pred EEECCCCEEEEEE-----------ecceEEEEEcccCcEeccCcEEEEEEecCcc
Confidence 3467777788776 5677778899999999999999999765443
No 239
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=49.00 E-value=53 Score=40.12 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred cceeEEEecCCCCCC---Cc-eEEEEEEEcC---CCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCC
Q 011684 55 QSKIREIFMPALSST---MT-EGKIVSWIKS---EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGA 127 (479)
Q Consensus 55 ~~~~~~i~~P~l~~~---~~-eg~i~~w~v~---~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~ 127 (479)
+....++.+-.|+.+ +. .|+-...+.+ .|-.+.-|--.|..|.+.=-.-+++|..|.+.+.+|+.|+.|.+|+
T Consensus 632 ngs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq 711 (2196)
T KOG0368|consen 632 NGSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQ 711 (2196)
T ss_pred cCcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCC
Confidence 345567778888776 11 2333333333 3456677778888887766777999999999999999999999999
Q ss_pred eEEEEec
Q 011684 128 AIGILAE 134 (479)
Q Consensus 128 ~l~~i~~ 134 (479)
+-++|+-
T Consensus 712 ~YAeiEv 718 (2196)
T KOG0368|consen 712 PYAEIEV 718 (2196)
T ss_pred eeeeheh
Confidence 9988753
No 240
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=48.65 E-value=18 Score=36.63 Aligned_cols=21 Identities=19% Similarity=0.647 Sum_probs=15.8
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 011684 76 VSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 76 ~~w~v~~Gd~V~~g~~l~~ve 96 (479)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 577777777777777777765
No 241
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.58 E-value=18 Score=36.49 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
.-++|++++|+.|++||+|++++
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEE
Confidence 34579999999999999988876
No 242
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.54 E-value=18 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
.=++|++++||.|++||+|++++
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEE
Confidence 34688888888888888888765
No 243
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=48.54 E-value=16 Score=39.69 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 66 LSSTMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 66 l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+|.-+..+-=+.++++.||.|++||+|+.|=+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 56667778888999999999999999999863
No 244
>COG3608 Predicted deacylase [General function prediction only]
Probab=48.54 E-value=31 Score=35.48 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=30.5
Q ss_pred eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.--+.||..|.| +-+++.||.|..|++|+.|.+.+
T Consensus 256 ~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 256 DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 334999999988 77999999999999999998743
No 245
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.51 E-value=15 Score=39.21 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 69 TMTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 69 ~~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
-++.+-=+.|+++.||+|++||+|+.|=+
T Consensus 375 ~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 375 TIDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred CcCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 35556668999999999999999999863
No 246
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=48.18 E-value=15 Score=39.27 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.4
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEecc
Q 011684 70 MTEGKIVSWIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 70 ~~eg~i~~w~v~~Gd~V~~g~~l~~vet~K 99 (479)
++.+-=+.++++.||+|++||+|+.|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455667899999999999999999987554
No 247
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=47.89 E-value=19 Score=36.69 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
--++|++++|+.|++||+|++++
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEE
Confidence 44568888888888888888876
No 248
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=47.62 E-value=16 Score=38.68 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.3
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 70 MTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 70 ~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+..+-=+.++++.||+|++||+||.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 5566668999999999999999999864
No 249
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=47.56 E-value=19 Score=39.51 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=26.1
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 108 YDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
..|+|.++++++||.|..|++|++++.+.
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVETDK 153 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVETDK 153 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEeecc
Confidence 56999999999999999999999997554
No 250
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=47.49 E-value=61 Score=26.35 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=28.5
Q ss_pred ceeeEEEcCCCeEE----------------EEEecCCCCeecCCCeEEEEecChhhH
Q 011684 99 KADMDVETFYDGIL----------------AAIVVPEGESAPVGAAIGILAETEAEV 139 (479)
Q Consensus 99 K~~~~v~ap~~G~v----------------~~i~~~~g~~v~~G~~l~~i~~~~~~~ 139 (479)
+....+.+..+|++ .++++++|+.|..|++|+++.-.....
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~a~~l 73 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGPARAL 73 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEEHHHH
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeCHHHH
Confidence 34556666666655 456889999999999999998655544
No 251
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.30 E-value=20 Score=35.91 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=15.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
-=++|++++|+.|+.||+|++|+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEE
Confidence 34567777777777777777665
No 252
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=47.26 E-value=16 Score=38.92 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCeEEEEEecCCCCeecCCCeEEEEecChhh
Q 011684 108 YDGILAAIVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 108 ~~G~v~~i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
..|.|.++.-+|||.+..|++||+|+.+...
T Consensus 51 eeGnIvsW~kKeGdkls~GDvl~EVETDKAt 81 (470)
T KOG0557|consen 51 EEGNIVSWKKKEGDKLSAGDVLLEVETDKAT 81 (470)
T ss_pred cCCceeeEeeccCCccCCCceEEEEecccce
Confidence 4799999999999999999999999876543
No 253
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.20 E-value=19 Score=35.81 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=18.4
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
|-=++|++++|+.|+.||+|++|+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 344578888888888888888776
No 254
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.01 E-value=20 Score=35.91 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=16.2
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 011684 76 VSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 76 ~~w~v~~Gd~V~~g~~l~~ve 96 (479)
++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 577888888888888777776
No 255
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=46.87 E-value=42 Score=35.53 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=36.7
Q ss_pred EEecceeeEEEcCCCeEEEEE-------------------------------ecCCCCeecCCCeEEEEec-ChhhHHH
Q 011684 95 VESDKADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAE-TEAEVAQ 141 (479)
Q Consensus 95 vet~K~~~~v~ap~~G~v~~i-------------------------------~~~~g~~v~~G~~l~~i~~-~~~~~~~ 141 (479)
+..-|-..+|.|..+|+|.++ +.+.||.|.+|++|++|.. .++..+.
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred cccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 445667888999999998887 5678999999999999987 4444433
No 256
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.65 E-value=20 Score=36.16 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=15.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 011684 75 IVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
=++|++++|+.|++||+|++++
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 4567777777777777777765
No 257
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.46 E-value=21 Score=35.97 Aligned_cols=23 Identities=9% Similarity=0.253 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
--++|++++|+.|++||+|++++
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEE
Confidence 45688888888888888888776
No 258
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=46.36 E-value=30 Score=29.26 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCCeecCCCeEEEEEec-ceeeEEEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 82 EGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 82 ~Gd~V~~g~~l~~vet~-K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
+.....++..|-.+..- +..+-+ ....|.-.+.+|++||.|..||.|+...
T Consensus 11 ~~K~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 11 EHKELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred CccccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecC
Confidence 33445555555555432 222222 2335666688999999999999999874
No 259
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=44.57 E-value=54 Score=34.20 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=38.6
Q ss_pred EcCCCCeecCCCeEEEEEecc-eeeEE--EcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 79 IKSEGDVLSKGESVVVVESDK-ADMDV--ETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~vet~K-~~~~v--~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
.+++||.|..||++..|.-.. .+..| ..-..|+|.++ +.+|+ ..+.+.+++++..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~ 111 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFD 111 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeC
Confidence 479999999999999886332 44444 44458999774 34555 5566778888753
No 260
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.70 E-value=24 Score=35.44 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=14.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEE
Q 011684 75 IVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 75 i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
=++|++++|+.|++||+|++++
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3466666677666666666655
No 261
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.65 E-value=46 Score=29.64 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=27.3
Q ss_pred cCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 106 TFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 106 ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
-|..|++.-..+..|+.+-.|++++-+..-.
T Consensus 96 iPvEGYvVtpIaDvG~RvrkGd~~AAvttRk 126 (161)
T COG4072 96 IPVEGYVVTPIADVGNRVRKGDPFAAVTTRK 126 (161)
T ss_pred EecCcEEEEEeecccchhcCCCceeEEEecc
Confidence 4789999999999999999999999986543
No 262
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.98 E-value=25 Score=34.99 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=16.0
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 011684 76 VSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 76 ~~w~v~~Gd~V~~g~~l~~ve 96 (479)
++|++++|+.|++||+|++|+
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 367888888888888777776
No 263
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.93 E-value=25 Score=35.28 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEE
Q 011684 74 KIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 74 ~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
--++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEE
Confidence 34577777777777777777765
No 264
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=42.90 E-value=53 Score=40.12 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=32.9
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------cceeeEEEcCCCeEEEEEe
Q 011684 77 SWIKSEGDVLSKGESVVVVES--------DKADMDVETFYDGILAAIV 116 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet--------~K~~~~v~ap~~G~v~~i~ 116 (479)
.++|+.||.|++||+||++.. +|+...|-+..+|.|..-.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~ 452 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWST 452 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccc
Confidence 679999999999999999975 4556789999999865543
No 265
>PRK12467 peptide synthase; Provisional
Probab=42.52 E-value=3.3e+02 Score=37.71 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred EEEEecccccchHHHHHHHHHHHHHhc
Q 011684 446 VNVTADHRIIYGADLAAFLQTFSKIVE 472 (479)
Q Consensus 446 lslt~DHRvvDG~~aa~Fl~~l~~~le 472 (479)
+-+++||-++||+-...|+++|.++..
T Consensus 177 l~l~~HHii~DG~S~~~l~~el~~~Y~ 203 (3956)
T PRK12467 177 LVVTLHHIISDGWSMRVLVEELVQLYS 203 (3956)
T ss_pred EEEecCeeeEccchHHHHHHHHHHHHH
Confidence 569999999999999999999988753
No 266
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=41.93 E-value=31 Score=36.27 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.8
Q ss_pred EEcCCCCeecCCCeEEE
Q 011684 78 WIKSEGDVLSKGESVVV 94 (479)
Q Consensus 78 w~v~~Gd~V~~g~~l~~ 94 (479)
-.|++||.|++||+|..
T Consensus 210 p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 210 PLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EEecCCCEECCCCEEEe
Confidence 46889999999999984
No 267
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=41.07 E-value=58 Score=36.12 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=40.1
Q ss_pred EcCCCCeecCCCeEEEEE-ecceeeE--EEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 79 IKSEGDVLSKGESVVVVE-SDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~ve-t~K~~~~--v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
.+++||.|..||++.+|. +.-.+.. |+.-..|+|.+| +.+|+ ..+.++|+.++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 588899999999999765 3333333 444567999876 45565 678999999985
No 268
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=40.46 E-value=51 Score=34.61 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEecceeeEEEcCCCeEEEEEe-------cCCCCeecCCCeEEE
Q 011684 72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV-------VPEGESAPVGAAIGI 131 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~-------~~~g~~v~~G~~l~~ 131 (479)
+|+-..+.|.|.....+ .+.+..--+|-|..+|+|.++. |++||.|..||+|..
T Consensus 163 ~GTrl~i~v~Ek~~~p~------~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPKP------VLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCCCC------ccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 56666777666643111 1122233578888999999884 567899999999886
No 269
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=39.30 E-value=62 Score=35.95 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=41.0
Q ss_pred EcCCCCeecCCCeEEEEEec-cee--eEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 79 IKSEGDVLSKGESVVVVESD-KAD--MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~vet~-K~~--~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.+++||.|..||+|..|.-. -.+ +-|+.-..|++.+| +.+|+ ..+.+.|+.+.+.+
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~ 181 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDED 181 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccC
Confidence 57899999999999998744 222 33555568999765 45555 67889999997644
No 270
>PRK05691 peptide synthase; Validated
Probab=39.05 E-value=5.4e+02 Score=36.06 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=24.1
Q ss_pred EEEEEecccccchHHHHHHHHHHHHHh
Q 011684 445 LVNVTADHRIIYGADLAAFLQTFSKIV 471 (479)
Q Consensus 445 ~lslt~DHRvvDG~~aa~Fl~~l~~~l 471 (479)
-+-+++||-++||+-...|+++|.++.
T Consensus 802 ~l~l~~HHii~DG~S~~ll~~el~~~Y 828 (4334)
T PRK05691 802 QLLVTLHHIVADGWSLNILLDEFSRLY 828 (4334)
T ss_pred EEEEeeCceeeccchHHHHHHHHHHHH
Confidence 457999999999999999999998765
No 271
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=38.94 E-value=1e+02 Score=37.20 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=30.3
Q ss_pred EEEcCCCCeecCCCeEEEEEec-------ceeeEEEcCCCeEEEE
Q 011684 77 SWIKSEGDVLSKGESVVVVESD-------KADMDVETFYDGILAA 114 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet~-------K~~~~v~ap~~G~v~~ 114 (479)
-++|+.|+.|+++|+|+|+-+. |+.-+|.|..+|-+.+
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~ 448 (1227)
T TIGR02388 404 LLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF 448 (1227)
T ss_pred EEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence 5789999999999999999863 5556677777776544
No 272
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=37.21 E-value=96 Score=31.81 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEecCCCCeecCCCeEEEEecCh
Q 011684 113 AAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 113 ~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.+++|++||.|..||.|+.+...+
T Consensus 270 ~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 270 DTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CccccCCcCEECCCCeEEeEcCCC
Confidence 356789999999999999987544
No 273
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=35.59 E-value=46 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.449 Sum_probs=15.6
Q ss_pred EEEcCCCCeecCCCeEEEE
Q 011684 77 SWIKSEGDVLSKGESVVVV 95 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~v 95 (479)
.-.|++||.|++||+|..=
T Consensus 206 ~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 206 EPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred eEEEccCCEEcCCCEEEEe
Confidence 3467899999999999843
No 274
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=35.44 E-value=22 Score=36.44 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.0
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 011684 77 SWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet 97 (479)
+++|++||.|++||.|+++-.
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccccCCcCEECCCCeEEeEcC
Confidence 346999999999999998864
No 275
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=34.03 E-value=25 Score=34.84 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.9
Q ss_pred EEEcCCCeEEEEEecCCCCeecCCCeEEE
Q 011684 103 DVETFYDGILAAIVVPEGESAPVGAAIGI 131 (479)
Q Consensus 103 ~v~ap~~G~v~~i~~~~g~~v~~G~~l~~ 131 (479)
-+...+-|..-+.+|+|||.|..||+|++
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 35677889999999999999999999997
No 276
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=33.59 E-value=58 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.0
Q ss_pred EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 011684 60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 60 ~i~~P~l~~~~~eg~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
.|+-| ..|.|..+.+++|+.|..|++|+.|-
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 56777 34999999999999999999999875
No 277
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=33.12 E-value=42 Score=29.02 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=28.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeccee--eEEEcCCCeEEEEEecCCCCeecCCCeEE
Q 011684 71 TEGKIVSWIKSEGDVLSKGESVVVVESDKAD--MDVETFYDGILAAIVVPEGESAPVGAAIG 130 (479)
Q Consensus 71 ~eg~i~~w~v~~Gd~V~~g~~l~~vet~K~~--~~v~ap~~G~v~~i~~~~g~~v~~G~~l~ 130 (479)
..|+|.++..++ +|.-...|++..-. .+.-.+-. ++.|.+||.|..|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~Gp----eLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAGP----ELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESSS-----BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCCC----eEEEcCCCEEecCCccc
Confidence 458888887754 56666666664432 22111111 46789999999999874
No 278
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=32.54 E-value=38 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=24.5
Q ss_pred CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 70 MTEGKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 70 ~~eg~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+..+-=+..+++.||+|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5566778999999999999999999876
No 279
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=32.23 E-value=91 Score=34.61 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred EcCCCCeecCCCeEEEEE-ecceeeE--EEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 79 IKSEGDVLSKGESVVVVE-SDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 79 ~v~~Gd~V~~g~~l~~ve-t~K~~~~--v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
.+++||.|..||++++|. +.-.+.. +..-..|+|.+| +.+|+ ..+.++|+.++.
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~ 176 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDT 176 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEec
Confidence 378999999999999884 4433333 344468999776 45565 677889999875
No 280
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=31.69 E-value=1e+02 Score=33.68 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred cCCCCeecCCCeEEEEEecc-e-eeEEEcCCCeEEEEEecCCCCeecCCCeEEEEecCh
Q 011684 80 KSEGDVLSKGESVVVVESDK-A-DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 80 v~~Gd~V~~g~~l~~vet~K-~-~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+++||+|..||+|..|.-.- . .+-|..+..|.+..+.+.+|+ ..+.++|++++.+.
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~~~ 179 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVSTEG 179 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEecCC
Confidence 48999999999999875333 2 222455555555566666665 56788999986544
No 281
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.55 E-value=47 Score=33.55 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=17.7
Q ss_pred EEEEEEEc--CCCCeecCCCeEEEEE
Q 011684 73 GKIVSWIK--SEGDVLSKGESVVVVE 96 (479)
Q Consensus 73 g~i~~w~v--~~Gd~V~~g~~l~~ve 96 (479)
..-.+|++ ++|+.|++||+|++++
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEE
Confidence 34456777 8888888888888776
No 282
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=30.81 E-value=43 Score=34.79 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEecceeeE--EEcCCCeEEEEEecCCCCeecCCCeEEEEec
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVESDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILAE 134 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~--v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~ 134 (479)
|.+..|....+..|++||.+..-+- -.++- ++++. .+ +..+++|+.|..||.|+.+..
T Consensus 281 ~~~~~~~y~~~~~v~KGeElG~F~~-GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYDSYKSVEVGDEVGEFRM-GSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecCCCCcccccceeeEecc-CCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 4456677777789999999999886 34333 34553 33 446899999999999987754
No 283
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=30.38 E-value=48 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVES 97 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~vet 97 (479)
+++ |.+++|+.|.+|++|++||-
T Consensus 70 ~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 70 VDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred cEE--EEeCCCCEecCCceEEEEEE
Confidence 554 78888888888888888873
No 284
>PRK11637 AmiB activator; Provisional
Probab=28.70 E-value=72 Score=33.89 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEecCCCCeecCCCeEEEEecCh
Q 011684 112 LAAIVVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 112 v~~i~~~~g~~v~~G~~l~~i~~~~ 136 (479)
+..+.|.+|+.|..|++|+.+...+
T Consensus 378 ~~~~~v~~G~~V~~G~~ig~~g~~g 402 (428)
T PRK11637 378 NQSALVSVGAQVRAGQPIALVGSSG 402 (428)
T ss_pred CCcCCCCCcCEECCCCeEEeecCCC
Confidence 3356789999999999999986543
No 285
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=28.40 E-value=1.1e+02 Score=36.30 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=46.7
Q ss_pred EecCCCCCCCceEEEEEEE----cCCCCeecCCCeEEEEE-ecceeeE--EEcCCCeEEEEEecCCCCeecCCCeEEEEe
Q 011684 61 IFMPALSSTMTEGKIVSWI----KSEGDVLSKGESVVVVE-SDKADMD--VETFYDGILAAIVVPEGESAPVGAAIGILA 133 (479)
Q Consensus 61 i~~P~l~~~~~eg~i~~w~----v~~Gd~V~~g~~l~~ve-t~K~~~~--v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~ 133 (479)
|.+|.|..+ .+|. +++||+|.-||++.+|. +.-.+.. ++.-..|+|++| +.+|+ ..+.+.|++++
T Consensus 107 ~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 456767654 2453 68899999999999886 3333444 444558999876 45666 56788999998
Q ss_pred cC
Q 011684 134 ET 135 (479)
Q Consensus 134 ~~ 135 (479)
..
T Consensus 179 ~~ 180 (1017)
T PRK14698 179 TP 180 (1017)
T ss_pred cC
Confidence 63
No 286
>PRK05691 peptide synthase; Validated
Probab=28.05 E-value=7e+02 Score=35.01 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=24.3
Q ss_pred EEEEEecccccchHHHHHHHHHHHHHh
Q 011684 445 LVNVTADHRIIYGADLAAFLQTFSKIV 471 (479)
Q Consensus 445 ~lslt~DHRvvDG~~aa~Fl~~l~~~l 471 (479)
.+-+++||-++||+-...|+++|.++-
T Consensus 1855 ~l~~~~HHii~DG~S~~ll~~el~~~Y 1881 (4334)
T PRK05691 1855 YFVLTLHHIVTEGWAMDIFARELGALY 1881 (4334)
T ss_pred EEEEecchhhhhhhhHHHHHHHHHHHH
Confidence 467999999999999999999998865
No 287
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=27.38 E-value=35 Score=33.19 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=25.5
Q ss_pred EEEcCCCCeecCCCeEEEEEecceeeE
Q 011684 77 SWIKSEGDVLSKGESVVVVESDKADMD 103 (479)
Q Consensus 77 ~w~v~~Gd~V~~g~~l~~vet~K~~~~ 103 (479)
.|++.+|.-+++=|+.|.||.||..++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999999876
No 288
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=27.23 E-value=2.1e+02 Score=26.84 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=43.4
Q ss_pred eeEEEecCCCCCCCceEEEEEEEcCCCCeec--------CCCeE-EEEEecceeeEEEcCCCeEE-EEE--ecCCCCeec
Q 011684 57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLS--------KGESV-VVVESDKADMDVETFYDGIL-AAI--VVPEGESAP 124 (479)
Q Consensus 57 ~~~~i~~P~l~~~~~eg~i~~w~v~~Gd~V~--------~g~~l-~~vet~K~~~~v~ap~~G~v-~~i--~~~~g~~v~ 124 (479)
+..-+.+| -.|+|.+....+|+... +++-+ +.+|++.-.+-+.. ..|.+ .+| .+++|+.+.
T Consensus 71 DyHr~haP------~~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~ 143 (189)
T TIGR00164 71 DVHVNRAP------AGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVS 143 (189)
T ss_pred ccceEEcc------cccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEe
Confidence 33455666 34888888888887332 44443 57776542222221 12322 233 567899999
Q ss_pred CCCeEEEEecC
Q 011684 125 VGAAIGILAET 135 (479)
Q Consensus 125 ~G~~l~~i~~~ 135 (479)
.|+.++.+.-.
T Consensus 144 kGeeiG~f~fG 154 (189)
T TIGR00164 144 RGQRIGMIRFG 154 (189)
T ss_pred cCcEEEEEecC
Confidence 99999998653
No 289
>PRK09294 acyltransferase PapA5; Provisional
Probab=26.48 E-value=52 Score=34.46 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=23.2
Q ss_pred EEEEecccccchHHHHHHHHHHHHHh
Q 011684 446 VNVTADHRIIYGADLAAFLQTFSKIV 471 (479)
Q Consensus 446 lslt~DHRvvDG~~aa~Fl~~l~~~l 471 (479)
+.+.+||-++||+.+..|+++|..+.
T Consensus 113 l~l~~hH~i~DG~S~~~ll~el~~~Y 138 (416)
T PRK09294 113 VTLYIHHSIADAHHSASLLDELWSRY 138 (416)
T ss_pred EEEEeccEeEccccHHHHHHHHHHHH
Confidence 56889999999999999999998755
No 290
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.02 E-value=61 Score=28.95 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=24.5
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCCccchhhHHHh
Q 011684 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (479)
Q Consensus 187 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 223 (479)
.+.|.+.++++++|||++.-. .-.|+.+|++.+
T Consensus 44 ~~~~~a~~~l~~~Gid~~~h~----s~~lt~~~~~~~ 76 (144)
T PRK11391 44 PADATAADVAANHGVSLEGHA----GRKLTAEMARNY 76 (144)
T ss_pred CCCHHHHHHHHHcCCCcCCCc----cCcCCHHHHhhC
Confidence 477999999999999985322 235788887643
No 291
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=25.65 E-value=72 Score=33.17 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=11.3
Q ss_pred ecCCCCeecCCCeEEEEecCh
Q 011684 116 VVPEGESAPVGAAIGILAETE 136 (479)
Q Consensus 116 ~~~~g~~v~~G~~l~~i~~~~ 136 (479)
.+++|+.+..|++|++++-.-
T Consensus 76 a~~eG~~v~~gepvl~i~G~~ 96 (352)
T PRK07188 76 YLKDGDIINPFETVLEIEGPY 96 (352)
T ss_pred EcCCCCEecCCCEEEEEEEcH
Confidence 445555555555555555443
No 292
>PRK10126 tyrosine phosphatase; Provisional
Probab=25.51 E-value=57 Score=29.16 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.3
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCCccchhhHHHh
Q 011684 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (479)
Q Consensus 187 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 223 (479)
.+.|.|.+.++++|||++.-. .-.|+.+|++.+
T Consensus 44 ~~~~~a~~~l~~~Gid~~~h~----sr~lt~~~~~~~ 76 (147)
T PRK10126 44 GADPTAISVAAEHQLSLEGHC----ARQISRRLCRNY 76 (147)
T ss_pred CCCHHHHHHHHHcCCCcCCCc----cccCCHHHhccC
Confidence 578999999999999986422 224777777543
No 293
>PRK02259 aspartoacylase; Provisional
Probab=25.48 E-value=32 Score=34.58 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=37.5
Q ss_pred EEEEEcCCC--CeecCCCeEEEEEecceeeEEEcCCCeEEEEEecCCCCeecCCCeEE
Q 011684 75 IVSWIKSEG--DVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG 130 (479)
Q Consensus 75 i~~w~v~~G--d~V~~g~~l~~vet~K~~~~v~ap~~G~v~~i~~~~g~~v~~G~~l~ 130 (479)
++.-.++.| +.|++||+|+.. .+.-++.++++..|+.. .+.|..-+..|..++
T Consensus 227 ~vhp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pv--fine~ay~~kg~a~~ 281 (288)
T PRK02259 227 MIHPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPV--FINEAAYYEKGIAMS 281 (288)
T ss_pred EechhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeE--EecHHHHHhhhhHhh
Confidence 334456667 559999999988 67778889999988884 445555555555444
No 294
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=25.19 E-value=96 Score=40.46 Aligned_cols=52 Identities=23% Similarity=0.361 Sum_probs=0.0
Q ss_pred EEcCCCCeecCCCeEEEEEecce------------------------eeEEEcCCCeEEE--------------------
Q 011684 78 WIKSEGDVLSKGESVVVVESDKA------------------------DMDVETFYDGILA-------------------- 113 (479)
Q Consensus 78 w~v~~Gd~V~~g~~l~~vet~K~------------------------~~~v~ap~~G~v~-------------------- 113 (479)
+.|++||.|+.||+|+.+-..-+ ..-|-|+.+|+|.
T Consensus 2616 l~v~~g~~v~~gdilak~p~~~~~t~DITgGLprv~eLfear~~~pk~~a~i~ei~G~v~~~~~~~~~~~i~i~~~~~~~ 2695 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRS 2695 (2890)
T ss_pred EEecCCCEecccceEeeccccccccccccCCcccchhheEeecCCCCCceEEeccceEEEeccccCCceEEEEECCCCce
Q ss_pred ---------EEecCCCCeecCCCeE
Q 011684 114 ---------AIVVPEGESAPVGAAI 129 (479)
Q Consensus 114 ---------~i~~~~g~~v~~G~~l 129 (479)
.++|++||.|..|+.|
T Consensus 2696 ~~y~v~~~~~~~v~~gd~v~~G~~l 2720 (2890)
T PRK09603 2696 MDYFVDKGKQILVHADEFVHAGEAM 2720 (2890)
T ss_pred eEEEccCCceeeecCCCEEccCCCc
No 295
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.18 E-value=68 Score=28.17 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=30.4
Q ss_pred ChhHHHHHhhcCCCccccccCCCCCccchhhHHHhhcc
Q 011684 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226 (479)
Q Consensus 189 sP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~ 226 (479)
.-..+..|++.|++..-|+-+| +-||++||+.+...
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~A 82 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQRA 82 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHHH
Confidence 3456888999999999999887 57999999999754
No 296
>PRK12316 peptide synthase; Provisional
Probab=25.15 E-value=7e+02 Score=35.69 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=24.7
Q ss_pred EEEEEecccccchHHHHHHHHHHHHHhc
Q 011684 445 LVNVTADHRIIYGADLAAFLQTFSKIVE 472 (479)
Q Consensus 445 ~lslt~DHRvvDG~~aa~Fl~~l~~~le 472 (479)
-+-+++||-++||+-..-|+++|.++-.
T Consensus 176 ~l~l~~HHii~Dg~S~~~l~~el~~~Y~ 203 (5163)
T PRK12316 176 VLLLTLHHIVSDGWSMNVLIEEFSRFYS 203 (5163)
T ss_pred EEEEcccceeechhHHHHHHHHHHHHHH
Confidence 3569999999999999999999998754
No 297
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=24.90 E-value=60 Score=28.43 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=25.0
Q ss_pred ccChhHHHHHhhcCCCccccccCCCCCccchhhHHHh
Q 011684 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223 (479)
Q Consensus 187 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~ 223 (479)
...|.|.++++++|||++.. -+ .|+.+|++.+
T Consensus 41 ~~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 57899999999999998632 22 7888888654
No 298
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.56 E-value=90 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=23.5
Q ss_pred ccHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 011684 291 TDALDALYEKVKPKGVTMTALLAKAAAMAL 320 (479)
Q Consensus 291 vt~l~~~~~~~k~~~~s~~~~likAva~Al 320 (479)
++.|.++++-.++++++|-.+++||+..|-
T Consensus 51 ~~sl~kL~~La~~N~v~feeLc~YAL~~a~ 80 (82)
T PF11020_consen 51 MDSLSKLYKLAKENNVSFEELCVYALGVAQ 80 (82)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 455666677667789999999999988763
No 299
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=24.27 E-value=2.2e+02 Score=20.73 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred cCccEEEEEEEEeccHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCcccc
Q 011684 278 LSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVN 327 (479)
Q Consensus 278 ~~vP~~~~~~~iDvt~l~~~~~~~k~~~~s~~~~likAva~Al~~~P~~n 327 (479)
++.++|++-.+-++-.. +.+..+.+|-|++.-+++++..+|.+...++
T Consensus 2 r~~~~f~lRlP~~l~~~--lk~~A~~~gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEK--LKERAEENGRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHH--HHHHHHHTTS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHH--HHHHHHHhCCChHHHHHHHHHHHHhccccCC
Confidence 45677766655444333 3333445689999999999999999876554
No 300
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=23.51 E-value=91 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCeEEEEEecCC-CCeecCCCeEEEEecCh
Q 011684 108 YDGILAAIVVPE-GESAPVGAAIGILAETE 136 (479)
Q Consensus 108 ~~G~v~~i~~~~-g~~v~~G~~l~~i~~~~ 136 (479)
.-|.|..+.... |+.|..|++|+.|+...
T Consensus 27 ~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k 56 (96)
T cd06848 27 LLGDIVFVELPEVGTEVKKGDPFGSVESVK 56 (96)
T ss_pred hCCCEEEEEecCCCCEEeCCCEEEEEEEcc
Confidence 368888876555 99999999999998544
No 301
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=23.02 E-value=83 Score=31.17 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=17.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEE
Q 011684 73 GKIVSWIKSEGDVLSKGESVVVVE 96 (479)
Q Consensus 73 g~i~~w~v~~Gd~V~~g~~l~~ve 96 (479)
+.+..|.+.+|+.|..||+|++||
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~ 72 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIE 72 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEE
Confidence 556677777777777777777766
No 302
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=22.54 E-value=1.2e+03 Score=28.57 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCccccccccCCCeeEEcCcccEEEEEEeCCCeEEeE-EecCCCCCHHHHHHHHHHHHHH
Q 011684 302 KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV-LQDADKLDLYLLSQKWKELVEK 380 (479)
Q Consensus 302 k~~~~s~~~~likAva~Al~~~P~~n~~~~~~~~i~~~~~i~i~~aV~~~~gl~~pv-i~~a~~~sl~ei~~~~~~l~~~ 380 (479)
++.++|.+.+++-|.+..|.+ +.+. ++|-+|+.+..... .+|+ +......+|.++.+++++....
T Consensus 42 ~~~~~t~~~~l~aa~~~lL~r-------~sg~------~dv~iG~~~~~R~~-~lplr~~~~~~~t~~~~l~~~~~~~~~ 107 (1389)
T TIGR03443 42 AGGGSTPFIILLAAFAALVYR-------LTGD------EDIVLGTSSNKSGR-PFVLRLNITPELSFLQLYAKVSEEEKE 107 (1389)
T ss_pred hhcCCCHHHHHHHHHHHHHHH-------HcCC------CceEEEeeeCCCCc-eEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 344999999999988888844 3222 33445555443222 3343 5667788999999988876555
Q ss_pred HHc
Q 011684 381 ARS 383 (479)
Q Consensus 381 ar~ 383 (479)
+..
T Consensus 108 ~~~ 110 (1389)
T TIGR03443 108 GAS 110 (1389)
T ss_pred HHh
Confidence 543
No 303
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=22.24 E-value=1e+02 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=31.2
Q ss_pred cceeeEEEcCCCeEEEE------------------EecCCCCeecCCCeEEEEecChhh
Q 011684 98 DKADMDVETFYDGILAA------------------IVVPEGESAPVGAAIGILAETEAE 138 (479)
Q Consensus 98 ~K~~~~v~ap~~G~v~~------------------i~~~~g~~v~~G~~l~~i~~~~~~ 138 (479)
.+++..|.+..+|+|.. .++++|+.+..|++|+++.-....
T Consensus 33 ~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i~~~~G~a~~ 91 (280)
T COG0157 33 RKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVLAEIEGPARA 91 (280)
T ss_pred CeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEEEEEeccHHH
Confidence 44677777777776643 378999999999999999765543
No 304
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=21.78 E-value=2.2e+02 Score=27.07 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=38.6
Q ss_pred eEEEEEEEcCCCCeecC--------CC-eEEEEEecce-eeE---EEcCCCeEEEEEecCCCCeecCCCeEEEEecC
Q 011684 72 EGKIVSWIKSEGDVLSK--------GE-SVVVVESDKA-DMD---VETFYDGILAAIVVPEGESAPVGAAIGILAET 135 (479)
Q Consensus 72 eg~i~~w~v~~Gd~V~~--------g~-~l~~vet~K~-~~~---v~ap~~G~v~~i~~~~g~~v~~G~~l~~i~~~ 135 (479)
+|+|.++...+|+.... ++ .+..+|+++. .+- |-+-..+.|. ..+++|+.+..|+.++.+.-.
T Consensus 99 ~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 99 SGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred cCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcEEeEEecC
Confidence 58999998888885543 33 3346666531 122 1122223332 256889999999999998653
No 305
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=21.48 E-value=37 Score=29.89 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.4
Q ss_pred cChhHHHHHhhcCCCccccc
Q 011684 188 ATPYAKKLLKQHKVDINSVV 207 (479)
Q Consensus 188 asP~aR~lA~e~gidl~~v~ 207 (479)
--|.+|.||.++||++.+|.
T Consensus 34 kLPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 34 KLPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCCcHHHHHHHhCCCHHHHH
Confidence 35889999999999998776
No 306
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=21.29 E-value=79 Score=25.93 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.6
Q ss_pred EEEEecccccchHHHHHHHHHHHHHhcC
Q 011684 446 VNVTADHRIIYGADLAAFLQTFSKIVEN 473 (479)
Q Consensus 446 lslt~DHRvvDG~~aa~Fl~~l~~~le~ 473 (479)
..+.+|-|+.++....++.+.|++++++
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 3688999999999999999999999875
No 307
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=21.12 E-value=95 Score=31.50 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=9.1
Q ss_pred cCCCCeecCCCeEEEEecC
Q 011684 117 VPEGESAPVGAAIGILAET 135 (479)
Q Consensus 117 ~~~g~~v~~G~~l~~i~~~ 135 (479)
+++|+.|..|++|++|+..
T Consensus 58 ~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 58 LPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred eCCCCEECCCCcEEEEEeC
Confidence 3444555555555554443
No 308
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=20.43 E-value=1.7e+02 Score=35.74 Aligned_cols=22 Identities=14% Similarity=0.487 Sum_probs=17.2
Q ss_pred EEcCCCCeecCCCeEEEEEecc
Q 011684 78 WIKSEGDVLSKGESVVVVESDK 99 (479)
Q Consensus 78 w~v~~Gd~V~~g~~l~~vet~K 99 (479)
+++..||.|++||.|+.+=-.+
T Consensus 952 ~~~~~g~~v~~Gd~L~~l~~er 973 (1331)
T PRK02597 952 LHVRDGDLVQRGDNLALLVFER 973 (1331)
T ss_pred EEecCCCEecCCCeEEEEEeee
Confidence 4567899999999999765443
No 309
>COG4325 Predicted membrane protein [Function unknown]
Probab=20.36 E-value=1.2e+02 Score=31.82 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.7
Q ss_pred eeEEEcCCCeEEEEE------------------ecCCCCeecCCCeEEEEecChh
Q 011684 101 DMDVETFYDGILAAI------------------VVPEGESAPVGAAIGILAETEA 137 (479)
Q Consensus 101 ~~~v~ap~~G~v~~i------------------~~~~g~~v~~G~~l~~i~~~~~ 137 (479)
-.+|+++..|++.+| ...+||.|..|++|+.+....+
T Consensus 229 a~~Ira~~sGyLq~ID~~~L~k~A~a~~~~Ihl~~r~Gdfvv~g~~L~~~~~~~~ 283 (464)
T COG4325 229 AVPIRAPHSGYLQTIDVDDLAKKAAASRYTIHLVTRVGDFVVAGGLLGWCWRRGT 283 (464)
T ss_pred cceeecCCccceEEeeHHHHHHHHHhhceEEEEEecCcceecCCCcEEEEecCCc
Confidence 356888888888777 4678999999999999976553
Done!