Query 011686
Match_columns 479
No_of_seqs 207 out of 717
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 3E-118 6E-123 963.0 42.3 464 2-469 1-464 (719)
2 cd08914 START_STARD15-like Lip 100.0 5E-36 1.1E-40 292.3 23.5 183 170-369 25-212 (236)
3 cd08873 START_STARD14_15-like 100.0 8.6E-36 1.9E-40 291.1 24.4 181 167-362 21-205 (235)
4 cd08868 START_STARD1_3_like Ch 100.0 1.6E-35 3.5E-40 284.1 23.9 186 194-393 19-207 (208)
5 cd08904 START_STARD6-like Lipi 100.0 1.2E-35 2.7E-40 285.2 22.9 180 198-389 21-201 (204)
6 cd08913 START_STARD14-like Lip 100.0 1E-35 2.2E-40 292.0 22.6 207 169-392 27-238 (240)
7 cd08906 START_STARD3-like Chol 100.0 2.9E-34 6.2E-39 276.8 21.7 186 194-393 20-208 (209)
8 cd08903 START_STARD5-like Lipi 100.0 6.1E-34 1.3E-38 274.1 23.3 185 197-393 20-207 (208)
9 cd08869 START_RhoGAP C-termina 100.0 1.5E-33 3.2E-38 269.3 22.7 177 198-393 18-196 (197)
10 cd08867 START_STARD4_5_6-like 100.0 4.2E-33 9.1E-38 267.1 22.8 182 199-391 22-205 (206)
11 cd08874 START_STARD9-like C-te 100.0 1.8E-32 3.8E-37 263.6 21.5 185 192-393 15-205 (205)
12 cd08871 START_STARD10-like Lip 100.0 4.4E-32 9.6E-37 262.8 23.5 186 197-396 21-212 (222)
13 cd08905 START_STARD1-like Chol 100.0 2.2E-32 4.7E-37 263.5 19.9 183 197-393 23-208 (209)
14 cd08909 START_STARD13-like C-t 100.0 4.6E-32 1E-36 260.2 21.5 176 199-392 27-203 (205)
15 cd08902 START_STARD4-like Lipi 100.0 5.4E-32 1.2E-36 257.0 19.9 180 197-391 21-201 (202)
16 smart00234 START in StAR and p 100.0 2.1E-31 4.5E-36 253.1 23.5 176 195-382 15-194 (206)
17 cd08911 START_STARD7-like Lipi 100.0 1.3E-30 2.7E-35 250.9 21.9 180 198-390 20-203 (207)
18 cd08872 START_STARD11-like Cer 100.0 1.8E-30 3.9E-35 254.6 20.8 186 198-395 25-228 (235)
19 PF01852 START: START domain; 100.0 1.4E-28 3E-33 233.2 24.2 186 196-395 16-204 (206)
20 cd08910 START_STARD2-like Lipi 100.0 3.7E-29 8.1E-34 240.8 20.0 177 197-391 23-204 (207)
21 cd08907 START_STARD8-like C-te 100.0 2.8E-29 6.2E-34 238.9 18.8 177 197-392 25-203 (205)
22 cd08870 START_STARD2_7-like Li 100.0 7.3E-29 1.6E-33 238.7 21.8 179 199-392 22-207 (209)
23 cd00177 START Lipid-binding ST 100.0 6.8E-28 1.5E-32 223.6 23.3 169 199-380 15-184 (193)
24 cd08908 START_STARD12-like C-t 100.0 4.5E-28 9.8E-33 232.7 20.3 175 199-392 27-202 (204)
25 cd08876 START_1 Uncharacterize 100.0 1.1E-27 2.5E-32 226.1 22.3 178 197-391 15-194 (195)
26 cd08877 START_2 Uncharacterize 99.9 1.9E-26 4.1E-31 222.5 18.5 185 192-392 15-213 (215)
27 KOG2761 START domain-containin 99.9 6.5E-22 1.4E-26 189.4 19.1 189 195-393 25-218 (219)
28 cd08875 START_ArGLABRA2_like C 99.5 1.5E-13 3.2E-18 134.2 16.9 128 228-365 60-200 (229)
29 cd08864 SRPBCC_DUF3074 DUF3074 99.4 5.2E-12 1.1E-16 122.2 15.8 129 254-391 65-206 (208)
30 KOG1739 Serine/threonine prote 99.3 2.2E-12 4.7E-17 134.6 9.2 167 192-367 396-578 (611)
31 cd01246 PH_oxysterol_bp Oxyste 99.2 6.8E-11 1.5E-15 97.6 8.9 91 7-109 1-91 (91)
32 PF00169 PH: PH domain; Inter 99.1 5.8E-10 1.3E-14 92.2 8.8 99 6-110 2-103 (104)
33 cd01251 PH_centaurin_alpha Cen 99.1 6.6E-10 1.4E-14 95.9 8.7 99 7-112 1-102 (103)
34 smart00233 PH Pleckstrin homol 99.0 1.8E-09 3.9E-14 87.4 10.2 99 6-110 2-101 (102)
35 cd01260 PH_CNK Connector enhan 99.0 9.1E-10 2E-14 93.0 8.5 94 6-109 1-96 (96)
36 cd07813 COQ10p_like Coenzyme Q 98.9 2E-08 4.2E-13 89.4 12.7 134 231-392 2-136 (138)
37 cd01252 PH_cytohesin Cytohesin 98.8 1.9E-08 4.1E-13 89.4 10.0 98 7-114 2-117 (125)
38 cd01250 PH_centaurin Centaurin 98.8 1.4E-08 3.1E-13 84.1 8.3 94 7-109 1-94 (94)
39 cd01235 PH_SETbf Set binding f 98.8 1.5E-08 3.3E-13 85.8 8.5 95 7-110 1-101 (101)
40 cd01257 PH_IRS Insulin recepto 98.8 2.9E-08 6.2E-13 85.8 9.6 90 5-108 2-100 (101)
41 cd01233 Unc104 Unc-104 pleckst 98.8 2.2E-08 4.7E-13 85.9 8.8 95 6-110 3-98 (100)
42 cd01238 PH_Tec Tec pleckstrin 98.8 1.6E-08 3.6E-13 87.7 8.1 99 8-109 3-106 (106)
43 cd01265 PH_PARIS-1 PARIS-1 ple 98.8 2E-08 4.4E-13 85.4 8.3 91 7-109 1-93 (95)
44 cd01247 PH_GPBP Goodpasture an 98.8 2.9E-08 6.4E-13 84.0 8.8 90 7-108 1-90 (91)
45 cd08866 SRPBCC_11 Ligand-bindi 98.7 5.3E-07 1.2E-11 80.2 15.1 141 231-392 2-143 (144)
46 PF15413 PH_11: Pleckstrin hom 98.7 6E-08 1.3E-12 85.1 8.3 94 7-109 1-112 (112)
47 cd00900 PH-like Pleckstrin hom 98.6 1.6E-07 3.4E-12 75.9 8.3 98 7-109 1-99 (99)
48 cd01266 PH_Gab Gab (Grb2-assoc 98.6 1.7E-07 3.6E-12 81.4 8.5 96 7-109 1-107 (108)
49 cd01241 PH_Akt Akt pleckstrin 98.5 5.1E-07 1.1E-11 77.8 8.3 94 6-109 2-101 (102)
50 cd01244 PH_RasGAP_CG9209 RAS_G 98.4 6E-07 1.3E-11 77.2 7.3 84 17-109 15-98 (98)
51 PF11274 DUF3074: Protein of u 98.4 1.1E-05 2.4E-10 76.9 16.5 129 237-369 13-164 (184)
52 cd07819 SRPBCC_2 Ligand-bindin 98.4 1E-05 2.2E-10 70.9 14.6 135 229-390 3-139 (140)
53 cd01264 PH_melted Melted pleck 98.4 1.7E-06 3.7E-11 74.8 8.8 97 7-109 2-100 (101)
54 cd01245 PH_RasGAP_CG5898 RAS G 98.4 8.7E-07 1.9E-11 76.2 6.6 88 9-108 3-97 (98)
55 cd00821 PH Pleckstrin homology 98.3 1.4E-06 3E-11 69.7 6.5 94 7-109 1-96 (96)
56 cd01253 PH_beta_spectrin Beta- 98.3 2.1E-06 4.7E-11 73.5 7.9 96 7-109 1-104 (104)
57 cd01219 PH_FGD FGD (faciogenit 98.2 7.7E-06 1.7E-10 70.3 9.5 97 6-112 3-101 (101)
58 PF15409 PH_8: Pleckstrin homo 98.2 2.3E-06 5.1E-11 72.3 6.0 83 9-109 1-88 (89)
59 cd01254 PH_PLD Phospholipase D 98.2 4.6E-06 9.9E-11 74.2 8.2 79 25-109 34-121 (121)
60 cd05018 CoxG Carbon monoxide d 98.2 3.5E-05 7.5E-10 67.9 13.6 137 230-391 3-143 (144)
61 cd01236 PH_outspread Outspread 98.2 5.9E-06 1.3E-10 71.9 8.1 95 7-108 1-102 (104)
62 cd01220 PH_CDEP Chondrocyte-de 98.2 1.4E-05 3E-10 68.9 9.4 95 6-111 3-98 (99)
63 cd01263 PH_anillin Anillin Ple 98.1 1.2E-05 2.6E-10 71.9 7.8 104 5-109 1-122 (122)
64 cd01256 PH_dynamin Dynamin ple 98.0 2E-05 4.3E-10 67.5 8.0 97 7-109 3-104 (110)
65 PF03364 Polyketide_cyc: Polyk 98.0 0.00023 4.9E-09 62.2 14.5 124 236-380 1-125 (130)
66 cd01237 Unc112 Unc-112 pleckst 98.0 2.4E-05 5.1E-10 68.1 7.9 89 17-109 13-102 (106)
67 cd08861 OtcD1_ARO-CYC_like N-t 98.0 0.00018 3.8E-09 63.8 13.3 136 232-392 3-141 (142)
68 KOG0930 Guanine nucleotide exc 97.7 5.9E-05 1.3E-09 75.3 6.7 98 5-111 260-376 (395)
69 cd07817 SRPBCC_8 Ligand-bindin 97.7 0.0025 5.4E-08 55.8 15.6 135 230-392 2-138 (139)
70 PRK10724 hypothetical protein; 97.7 0.002 4.4E-08 59.9 15.6 129 227-380 14-143 (158)
71 cd08860 TcmN_ARO-CYC_like N-te 97.6 0.0035 7.7E-08 57.3 16.2 138 231-393 4-144 (146)
72 cd07821 PYR_PYL_RCAR_like Pyra 97.5 0.0038 8.3E-08 54.2 14.5 137 229-391 2-139 (140)
73 cd01230 PH_EFA6 EFA6 Pleckstri 97.5 0.00051 1.1E-08 61.0 8.7 96 8-110 3-111 (117)
74 PF10604 Polyketide_cyc2: Poly 97.4 0.029 6.4E-07 48.6 18.1 136 229-392 3-139 (139)
75 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0026 5.7E-08 56.7 9.5 99 8-110 12-121 (123)
76 cd07823 SRPBCC_5 Ligand-bindin 96.9 0.038 8.3E-07 49.7 14.7 141 231-392 2-145 (146)
77 cd07824 SRPBCC_6 Ligand-bindin 96.8 0.067 1.5E-06 48.1 15.3 135 230-390 3-145 (146)
78 cd08865 SRPBCC_10 Ligand-bindi 96.7 0.079 1.7E-06 45.7 14.4 134 232-392 3-139 (140)
79 PF15410 PH_9: Pleckstrin homo 96.6 0.01 2.2E-07 52.5 8.0 96 7-109 2-117 (119)
80 KOG2200 Tumour suppressor prot 96.4 0.00066 1.4E-08 73.8 -0.7 76 289-376 575-650 (674)
81 cd07812 SRPBCC START/RHO_alpha 96.4 0.25 5.5E-06 41.1 15.3 114 231-366 2-115 (141)
82 cd01224 PH_Collybistin Collybi 96.2 0.066 1.4E-06 47.1 10.7 99 6-108 3-105 (109)
83 cd01239 PH_PKD Protein kinase 96.0 0.02 4.3E-07 50.7 6.6 98 7-109 2-117 (117)
84 PF06240 COXG: Carbon monoxide 95.9 0.51 1.1E-05 42.5 15.7 126 233-380 2-127 (140)
85 cd08862 SRPBCC_Smu440-like Lig 95.7 0.72 1.6E-05 40.0 15.4 40 230-270 3-42 (138)
86 cd07818 SRPBCC_1 Ligand-bindin 95.6 0.72 1.6E-05 41.0 15.2 136 229-392 3-149 (150)
87 cd07822 SRPBCC_4 Ligand-bindin 95.5 1 2.2E-05 38.9 15.7 36 230-266 2-37 (141)
88 KOG3845 MLN, STAR and related 94.7 0.0017 3.6E-08 64.6 -5.0 157 201-366 27-183 (241)
89 cd01234 PH_CADPS CADPS (Ca2+-d 94.5 0.058 1.2E-06 47.0 4.6 96 7-112 4-112 (117)
90 cd01218 PH_phafin2 Phafin2 Pl 94.2 0.39 8.6E-06 41.8 9.3 97 6-113 5-101 (104)
91 cd01223 PH_Vav Vav pleckstrin 93.6 0.25 5.3E-06 44.0 6.9 86 24-110 20-111 (116)
92 COG2867 Oligoketide cyclase/li 93.1 1 2.2E-05 41.7 10.1 112 229-365 3-115 (146)
93 PF15408 PH_7: Pleckstrin homo 92.5 0.065 1.4E-06 45.1 1.5 91 8-108 1-95 (104)
94 cd01221 PH_ephexin Ephexin Ple 92.4 0.69 1.5E-05 41.7 8.1 98 8-107 6-119 (125)
95 PTZ00267 NIMA-related protein 92.3 0.21 4.6E-06 53.8 5.6 97 4-110 376-476 (478)
96 cd01261 PH_SOS Son of Sevenles 92.0 1.3 2.8E-05 39.2 9.2 99 5-111 4-110 (112)
97 cd01222 PH_clg Clg (common-sit 91.6 1.4 2.9E-05 38.0 8.7 92 5-110 4-95 (97)
98 cd07814 SRPBCC_CalC_Aha1-like 91.2 9.1 0.0002 32.9 14.2 30 230-260 2-31 (139)
99 cd07816 Bet_v1-like Ligand-bin 90.7 11 0.00025 34.1 14.5 120 229-364 2-122 (148)
100 COG3427 Carbon monoxide dehydr 90.7 4.9 0.00011 37.3 11.8 139 230-392 3-144 (146)
101 cd07825 SRPBCC_7 Ligand-bindin 90.6 11 0.00024 33.0 15.0 30 230-260 2-31 (144)
102 cd01259 PH_Apbb1ip Apbb1ip (Am 90.3 0.68 1.5E-05 41.0 5.6 97 6-109 1-107 (114)
103 KOG0690 Serine/threonine prote 90.1 0.31 6.7E-06 50.8 3.9 98 5-112 15-118 (516)
104 cd07820 SRPBCC_3 Ligand-bindin 89.3 15 0.00032 32.4 15.1 108 232-363 3-113 (137)
105 cd01225 PH_Cool_Pix Cool (clon 87.6 1.2 2.7E-05 39.2 5.4 76 23-109 27-108 (111)
106 cd01243 PH_MRCK MRCK (myotonic 86.9 5.7 0.00012 35.7 9.2 104 5-109 2-118 (122)
107 cd01242 PH_ROK Rok (Rho- assoc 85.9 3.7 8E-05 36.3 7.4 93 6-110 1-110 (112)
108 KOG3640 Actin binding protein 85.7 1.3 2.8E-05 51.4 5.6 108 2-112 987-1108(1116)
109 PF14593 PH_3: PH domain; PDB: 85.4 4.2 9.2E-05 35.5 7.6 88 6-113 14-102 (104)
110 KOG1090 Predicted dual-specifi 84.3 0.71 1.5E-05 53.7 2.8 93 6-110 1635-1731(1732)
111 COG5637 Predicted integral mem 84.0 26 0.00057 33.7 12.6 134 229-393 71-210 (217)
112 KOG2059 Ras GTPase-activating 83.4 1 2.2E-05 50.8 3.4 95 7-109 567-663 (800)
113 cd01249 PH_oligophrenin Oligop 79.4 13 0.00028 32.6 8.2 93 7-107 1-102 (104)
114 PLN02866 phospholipase D 76.2 8.8 0.00019 45.6 8.1 99 25-131 219-327 (1068)
115 cd01232 PH_TRIO Trio pleckstri 75.1 16 0.00034 32.4 7.7 88 23-112 23-114 (114)
116 cd01258 PH_syntrophin Syntroph 69.1 12 0.00025 33.0 5.5 98 8-108 2-107 (108)
117 cd01262 PH_PDK1 3-Phosphoinosi 67.8 21 0.00047 30.4 6.6 73 18-109 10-87 (89)
118 PF11687 DUF3284: Domain of un 64.1 95 0.0021 27.4 10.4 113 230-372 1-113 (120)
119 cd01227 PH_Dbs Dbs (DBL's big 60.1 49 0.0011 30.2 7.9 92 24-118 29-123 (133)
120 KOG4424 Predicted Rho/Rac guan 59.9 23 0.0005 39.5 6.7 95 7-113 274-372 (623)
121 KOG1117 Rho- and Arf-GTPase ac 55.8 9.8 0.00021 44.2 3.2 79 22-109 1049-1130(1186)
122 COG3832 Uncharacterized conser 53.9 1.2E+02 0.0027 27.4 9.7 32 227-259 7-38 (149)
123 cd01248 PH_PLC Phospholipase C 51.4 43 0.00092 29.1 5.9 84 23-108 20-114 (115)
124 KOG1117 Rho- and Arf-GTPase ac 43.7 60 0.0013 38.2 6.8 86 20-109 514-600 (1186)
125 PTZ00283 serine/threonine prot 43.5 26 0.00056 38.2 4.0 41 69-111 450-490 (496)
126 TIGR01599 PYST-A Plasmodium yo 42.3 3.4E+02 0.0075 26.6 19.4 120 228-356 59-208 (208)
127 KOG1739 Serine/threonine prote 41.3 26 0.00056 38.4 3.4 54 7-60 20-81 (611)
128 cd08893 SRPBCC_CalC_Aha1-like_ 40.6 2.3E+02 0.0049 24.0 10.2 30 230-260 2-31 (136)
129 KOG2996 Rho guanine nucleotide 36.4 66 0.0014 36.2 5.6 100 21-122 419-524 (865)
130 cd08898 SRPBCC_CalC_Aha1-like_ 33.0 38 0.00083 29.4 2.7 31 230-261 3-33 (145)
131 cd01228 PH_BCR-related BCR (br 30.9 47 0.001 28.8 2.7 31 77-109 63-93 (96)
132 cd08899 SRPBCC_CalC_Aha1-like_ 30.2 39 0.00085 30.7 2.4 31 228-259 11-41 (157)
133 KOG0592 3-phosphoinositide-dep 29.9 76 0.0016 35.6 4.8 71 22-109 463-536 (604)
134 KOG1451 Oligophrenin-1 and rel 28.2 1.2E+02 0.0025 34.4 5.8 100 3-109 263-366 (812)
135 KOG1264 Phospholipase C [Lipid 25.2 73 0.0016 37.3 3.7 44 72-116 872-915 (1267)
136 KOG4047 Docking protein 1 (p62 24.1 78 0.0017 34.4 3.6 100 4-109 7-116 (429)
137 cd01240 PH_beta-ARK Beta adren 23.9 95 0.0021 27.6 3.5 101 5-117 3-105 (116)
138 PF15405 PH_5: Pleckstrin homo 23.9 1.3E+02 0.0027 27.4 4.5 41 69-109 94-134 (135)
139 cd01207 Ena-Vasp Enabled-VASP- 22.5 1.9E+02 0.0041 25.6 5.1 48 65-112 49-109 (111)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.6e-118 Score=962.99 Aligned_cols=464 Identities=90% Similarity=1.421 Sum_probs=435.0
Q ss_pred CCCceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEee
Q 011686 2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 81 (479)
Q Consensus 2 ~~~~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn 81 (479)
++.+.|||||||||+||||++|||+|||||+|++|+|||++|.++++|||||+||+||||||+|||+|||++||||+|||
T Consensus 1 ~~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 1 ASKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CCcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeecccCHHHHHHHHHHHHHHHhhhccccccCCCcccccccccccCCCCCCCCCccccccccccccccccccc
Q 011686 82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNL 161 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
+++|++|++|||+|+|||++||+||++||+|++++...++++|++|++...+.+|++.++++++++++.++..++.++.+
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999999999888888999999999999999999999999888877777888899
Q ss_pred eeeeecCCCCCCccccCCccccccccccccccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHH
Q 011686 162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE 241 (479)
Q Consensus 162 ~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe 241 (479)
.|++|||+|||.+.++||.....+++|+++.+|+++...|+++.|+||++||++..+.++.++++.++||++|||+|+|+
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE 240 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE 240 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCCHH
Confidence 99999999999999999999988888999999999999999999999999999988877776777899999999999999
Q ss_pred HHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCC
Q 011686 242 EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC 321 (479)
Q Consensus 242 ~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~ 321 (479)
+||++||++++.|.+||.++.++++||+||+|++|+|+++++.|+|+.++|||||++|+|++.+||+|+|+++||+||+|
T Consensus 241 ~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c 320 (719)
T PLN00188 241 EIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC 320 (719)
T ss_pred HHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcCCCCccC
Q 011686 322 GPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQMLNSVAGLREWFAQTDERSAHP 401 (479)
Q Consensus 322 Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~~l~~va~LRe~~~~~~~~~~~~ 401 (479)
||++|||||++++|||+|.|++..+|.++|+|++++++||+||++.+.+++.++++++||+++||||||++++++.++.+
T Consensus 321 PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~~~ 400 (719)
T PLN00188 321 GPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGAPP 400 (719)
T ss_pred CCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCccc
Confidence 99999999999999999999987766679999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccCCCCCCCCcccccCcCCCccccccCCCCCCcccCCCCCchhhhhhc
Q 011686 402 RIPVMVNMASASVSSKKNQNLQDSLIHPSSSLDQLNAGSRHSVMMDEYSDEDEEFQLAESEQEANEKK 469 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~f~vpe~~~~~~~~~ 469 (479)
|+|.+.+|+.....+++++..++.+ ...+..+..+++++|++++||+||||||||++++.++.|
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k 464 (719)
T PLN00188 401 RIPVMVNMASASVSSKKNQKPQESS----PSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTK 464 (719)
T ss_pred cceeecccccccccccccccccccc----cccccccccchhhhhhccccccchhccCCCccccccccc
Confidence 9999999999887777775555332 223455566677779999999999999999998766555
No 2
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=5e-36 Score=292.33 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=166.8
Q ss_pred CCCCccccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHH
Q 011686 170 GPPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV 247 (479)
Q Consensus 170 ~~~~~~~~w~~~~~~~~~~~~~--~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL 247 (479)
--.+++++|+++||+||+|+|+ ++..++.++|++..+++||+||+++ ++ ....||+++++++|+++++++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~s------~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 25 EEVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-EH------DVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred ccCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-CC------CcEEEEEEEEEcCCHHHHHHHH
Confidence 3678999999999999999997 8889999999999999999999996 31 2579999999999999999999
Q ss_pred hcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCC-ccCCceEEEEEEEEEcC-CCc-EEEEEEeccCCCCCCC
Q 011686 248 MSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPM-FVWPRDLCYVRYWRRND-DGS-YVVLFRSREHENCGPQ 324 (479)
Q Consensus 248 ~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~-~vs~RDFV~lr~~r~~e-dGs-yvI~~~SV~hp~~Pp~ 324 (479)
.|++ .|++||.++.++++|+++|+++. ||+..+ .|| |+++||||+++.+++.. +|. |+|..+||.||.+||.
T Consensus 98 ~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~---pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~ 172 (236)
T cd08914 98 SDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITC---PIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPS 172 (236)
T ss_pred hChh-hhchhHHhhceEEEEEEeCCCcC-EEEEec---CCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCC
Confidence 9986 69999999999999999999988 588765 567 89999999999988764 775 9999999999999999
Q ss_pred CCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc
Q 011686 325 PGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL 369 (479)
Q Consensus 325 ~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v 369 (479)
+||||+...+.||+|+|+++ + +|.|||++|+|| ||+|.|.
T Consensus 173 kg~VRv~~~~~G~~I~pl~~--~--~~~VtY~~~~dP-g~lp~~~ 212 (236)
T cd08914 173 PQYIRSEIICAGFLIHAIDS--N--SCTVSYFNQISA-SILPYFA 212 (236)
T ss_pred CCcEEeEEEEEEEEEEEcCC--C--cEEEEEEEEcCC-ccchheE
Confidence 99999999999999999973 3 799999999999 9999885
No 3
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=8.6e-36 Score=291.10 Aligned_cols=181 Identities=20% Similarity=0.245 Sum_probs=162.9
Q ss_pred cCCCCCCccccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHH
Q 011686 167 IGNGPPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF 244 (479)
Q Consensus 167 ~g~~~~~~~~~w~~~~~~~~~~~~~--~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf 244 (479)
+-+.-.+++++|+++||+||+|+|+ ++.+.+.++|++..+++||+||+++.. + ...||++++|++++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~s-~------~l~fk~e~~vd~s~~~v~ 93 (235)
T cd08873 21 SLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQD-G------VLSFCVELKVQTCASDAF 93 (235)
T ss_pred ecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecCC-C------ceEEEEEEEecCCHHHHH
Confidence 3455689999999999999999997 999999999999999999999999832 2 468999999999999999
Q ss_pred HHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEc-CC-CcEEEEEEeccCCCCC
Q 011686 245 ELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DD-GSYVVLFRSREHENCG 322 (479)
Q Consensus 245 ~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~-ed-GsyvI~~~SV~hp~~P 322 (479)
++|.|.+ .|++||.++.++++|++++++..|+|.++. +|||+++||||++++|++. ++ +.|+|..+||.|+.+|
T Consensus 94 dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~P 169 (235)
T cd08873 94 DLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVP 169 (235)
T ss_pred HHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCC
Confidence 9999976 699999999999999999998888776654 6789999999999999884 33 4599999999999999
Q ss_pred CCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecC
Q 011686 323 PQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLK 362 (479)
Q Consensus 323 p~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~k 362 (479)
|++||||+....|||+|+|++ ++ .|.|||++|+||+
T Consensus 170 p~kgyVR~~~~~ggW~I~p~~--~~--~t~VtY~~~~dPg 205 (235)
T cd08873 170 QTPGYSRTEVACAGFVIRQDC--GT--CTEVSYYNETNPK 205 (235)
T ss_pred CCCCeEEEEEEeeeEEEEECC--CC--cEEEEEEEEcCCC
Confidence 999999999999999999997 33 7999999999986
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.6e-35 Score=284.15 Aligned_cols=186 Identities=22% Similarity=0.393 Sum_probs=162.2
Q ss_pred ccccCCCcEEEEeeC-CeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHh-cCCCCccchhhccceeEEEEEec
Q 011686 194 QAFSRKHWRLLQCQN-GLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVD 271 (479)
Q Consensus 194 ~~~a~~~Wkl~~~~n-GV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~-dld~~R~eWD~~~~~~evVe~iD 271 (479)
+++...+|++..+++ ||+||++..++ . +++||++++|++++++||+.|+ |++ .|++||+.+.++++|+++|
T Consensus 19 ~~~~~~~W~l~~~~~~~i~i~~r~~~~--~----~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 19 SILTDPGWKLEKNTTWGDVVYSRNVPG--V----GKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred HHhcCCCceEEEecCCCCEEEEEEcCC--C----ceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 345566999999987 99999998763 1 4799999999999999997554 554 7999999999999999999
Q ss_pred CceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCee
Q 011686 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRT 351 (479)
Q Consensus 272 d~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t 351 (479)
++++|+|..+++. +||++++||||++|.|++.+ |.|+|+.+|++||.+|+++|||||....|||+|+|+++++ .+|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~--~~t 167 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP--NKC 167 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC--Cce
Confidence 9999999887655 57999999999999998865 6799999999999999999999999999999999998533 389
Q ss_pred EEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 352 QVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 352 ~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
.|+|++++|||||+|.|+ |+++++. +++++++||+++.+
T Consensus 168 ~v~~~~~~Dp~G~iP~~lvN~~~~~~---~~~~~~~Lr~~~~~ 207 (208)
T cd08868 168 NFTWLLNTDLKGWLPQYLVDQALASV---LLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEEECCCCCCcceeeehhhHHH---HHHHHHHHHHHHhh
Confidence 999999999999999885 7777766 45668999999864
No 5
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.2e-35 Score=285.22 Aligned_cols=180 Identities=18% Similarity=0.291 Sum_probs=157.3
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEE
Q 011686 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (479)
Q Consensus 198 ~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIV 277 (479)
.++|++.+..+|+.||.+... +.. ++++|++|+|+++|++||+++.+. ..|.+||.++.++++||+||++|+|+
T Consensus 21 ~~gWk~~k~~~~~~v~~k~~~-~~~----gkl~k~egvi~~~~e~v~~~l~~~-e~r~~Wd~~~~~~~iie~Id~~T~I~ 94 (204)
T cd08904 21 TSGWKVVKTSKKITVSWKPSR-KYH----GNLYRVEGIIPESPAKLIQFMYQP-EHRIKWDKSLQVYKMLQRIDSDTFIC 94 (204)
T ss_pred ccCCeEEecCCceEEEEEEcC-CCC----ceEEEEEEEecCCHHHHHHHHhcc-chhhhhcccccceeeEEEeCCCcEEE
Confidence 379999999999999999754 222 689999999999999999999884 47999999999999999999999999
Q ss_pred EEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEE
Q 011686 278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (479)
Q Consensus 278 Y~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~ 357 (479)
|..+.+ .+...+++||||.+|+|++.++|.|+++..||+||+|||++|||||+++++||+|+|++++++ .|.+++++
T Consensus 95 ~~~~~~-~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~--~t~l~~~~ 171 (204)
T cd08904 95 HTITQS-FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPA--YSKLVMFV 171 (204)
T ss_pred EEeccc-ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCC--ceEEEEEE
Confidence 987654 222459999999999999877889999999999999999999999999999999999986554 79999999
Q ss_pred eeecCCCcccc-chhhhhHHHHHHHHHHHHHHH
Q 011686 358 QIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLRE 389 (479)
Q Consensus 358 ~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe 389 (479)
++|||||+|.+ +++++++.++.+ +..|++
T Consensus 172 ~~DlkG~lP~~vv~~~~~~~~~~f---~~~~~~ 201 (204)
T cd08904 172 QPELRGNLSRSVIEKTMPTNLVNL---ILDAKD 201 (204)
T ss_pred EeCCCCCCCHHHHHHHhHHHHHHH---HHHHHH
Confidence 99999999865 699988885554 555554
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=1e-35 Score=291.95 Aligned_cols=207 Identities=22% Similarity=0.298 Sum_probs=177.7
Q ss_pred CCCCCccccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHH
Q 011686 169 NGPPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFEL 246 (479)
Q Consensus 169 ~~~~~~~~~w~~~~~~~~~~~~~--~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~l 246 (479)
+.-.+++++|+++||+||+|+|+ ++.+.+.++|++.++++||+||+++.. + ...||++++|++++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~s-~------~~~fK~e~~vd~s~e~v~~l 99 (240)
T cd08913 27 QTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEED-K------FLSFKVEMVVHVDAAQAFLL 99 (240)
T ss_pred cccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeCC-C------ccEEEEEEEEcCCHHHHHHH
Confidence 34588999999999999999997 888889999999999999999997643 2 46999999999999999999
Q ss_pred HhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEc-CCC-cEEEEEEeccCCCCCCC
Q 011686 247 VMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG-SYVVLFRSREHENCGPQ 324 (479)
Q Consensus 247 L~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~-edG-syvI~~~SV~hp~~Pp~ 324 (479)
|.|++ .|++||.++.++++|+++|+++. +|+...++| +|++++||||+++.+++. ++| .|+|+.+|+.||++||+
T Consensus 100 L~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~ 176 (240)
T cd08913 100 LSDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPT 176 (240)
T ss_pred HhChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCC
Confidence 99976 69999999999999999998875 588877664 369999999999999775 444 69999999999999999
Q ss_pred CCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHHh
Q 011686 325 PGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 325 ~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
+|||||+..+|||+|.|++ +| .|.|+|++++||+ ++|.|+ |.+..+.++ -++.++.-.++.
T Consensus 177 kgyVR~~~~~ggw~i~p~~--~~--~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~--~~~~~~~~~~~~ 238 (240)
T cd08913 177 PEYTRGETLCSGFCIWEES--DQ--LTKVSYYNQATPG-VLPYISTDIAGLSSEF--YSTFSACSQFLL 238 (240)
T ss_pred CCcEEeeecccEEEEEECC--CC--cEEEEEEEEeCCc-cccHHHhhhhhhccch--hHHHHHHHHHhh
Confidence 9999999999999999987 34 7999999999995 999875 777776653 345555444443
No 7
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=2.9e-34 Score=276.79 Aligned_cols=186 Identities=19% Similarity=0.308 Sum_probs=161.2
Q ss_pred ccccCCCcEEEEe-eCCeEEEEEecccCCCCccccceEEEEEEecccHHHHH-HHHhcCCCCccchhhccceeEEEEEec
Q 011686 194 QAFSRKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (479)
Q Consensus 194 ~~~a~~~Wkl~~~-~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf-~lL~dld~~R~eWD~~~~~~evVe~iD 271 (479)
.+.+.++|++.+. ++||+||++..++. ++.||++++|++|+++|| ++|.|++ .|++||+++.++++|+++|
T Consensus 20 ~l~~~~~W~l~~~~~~gi~V~s~~~~~~------~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~ 92 (209)
T cd08906 20 ILAQEENWKFEKNNDNGDTVYTLEVPFH------GKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVD 92 (209)
T ss_pred HhhcccCCEEEEecCCCCEEEEeccCCC------CcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeecc
Confidence 3445789999886 59999999876521 379999999999999997 6888875 6999999999999999999
Q ss_pred CceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCee
Q 011686 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRT 351 (479)
Q Consensus 272 d~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t 351 (479)
++++|+| .+..+|++|++++||||++|.|.+.+++ |+++..|+.|+.+||++|||||++.++||.|.|.+.+++ .|
T Consensus 93 ~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~--~t 168 (209)
T cd08906 93 DNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPS--VC 168 (209)
T ss_pred CCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCC--ce
Confidence 9999988 6676667779999999999999887654 889999999999999999999999999999999754344 79
Q ss_pred EEEEEEeeecCCCcccc-chhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 352 QVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 352 ~Vt~i~~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
.|||++++|||||||.| +|+++.+.+ ++++.+||++++.
T Consensus 169 ~vt~~~~~Dp~G~lP~~lvN~~~~~~~---~~~~~~LR~~~~~ 208 (209)
T cd08906 169 TFIWILNTDLKGRLPRYLIHQSLAATM---FEFASHLRQRIRD 208 (209)
T ss_pred EEEEEEecCCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 99999999999999987 599988875 5568899998764
No 8
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=6.1e-34 Score=274.12 Aligned_cols=185 Identities=21% Similarity=0.318 Sum_probs=157.8
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCC-CccchhhccceeEEEEEecCcee
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTA 275 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~-~R~eWD~~~~~~evVe~iDd~td 275 (479)
..++|++.+++||++||.+... +. .++.||++|+|++++++|+++|+|... .|.+||.++.++++||++|+++.
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~-~~----~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~ 94 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSA-EF----AGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVS 94 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecC-CC----CCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEE
Confidence 3579999999999999999643 11 146799999999999999999997643 67999999999999999999999
Q ss_pred EEEEEEecccCC-CccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEE
Q 011686 276 ILYHRLQLDWFP-MFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQ 354 (479)
Q Consensus 276 IVY~~~~~~~~p-~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt 354 (479)
|+|.. .+|.+ +++++||||++++|++.++|.|++...|++||.|||++|||||+..++||++.|++.+++ +|.|+
T Consensus 95 i~~~~--~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~--~t~v~ 170 (208)
T cd08903 95 VCRTV--TPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPD--KTQLV 170 (208)
T ss_pred EEEEe--cchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCC--ceEEE
Confidence 87663 22221 249999999999999999999999999999999999999999999999999999986443 89999
Q ss_pred EEEeeecCCCcccc-chhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 355 HLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 355 ~i~~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
|++++|||||+|.| +|+++.+.++ .++.+||+.++.
T Consensus 171 ~~~~~DpkG~iP~~lvn~~~~~~~~---~~~~~Lr~~~~~ 207 (208)
T cd08903 171 SFFQTDLSGYLPQTVVDSFFPASMA---EFYNNLTKAVKA 207 (208)
T ss_pred EEEEeccCCCcCHHHHHHHhhHHHH---HHHHHHHHHHhh
Confidence 99999999999977 5888887754 567888888753
No 9
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.5e-33 Score=269.25 Aligned_cols=177 Identities=24% Similarity=0.336 Sum_probs=154.8
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEE
Q 011686 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (479)
Q Consensus 198 ~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIV 277 (479)
..+|++..+++||+||.+..+.+ ..++.||++++|+++|++|+++|++ .|++||+++.++++|+++|++++|+
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~----~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i~ 90 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDG----HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEVY 90 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCC----CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEEE
Confidence 57999999999999999987522 1368999999999999999999976 4899999999999999999999999
Q ss_pred EEEEecccCCCccCCceEEEEEEEEEc-CCCcEEEEEEeccCC-CCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEE
Q 011686 278 YHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHE-NCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (479)
Q Consensus 278 Y~~~~~~~~p~~vs~RDFV~lr~~r~~-edGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~ 355 (479)
|+++. .|||+++||||++|.|+.. ++|.|+|+.+||.|| .+|+ |||||....|||+|+|++ ++ +|+|||
T Consensus 91 y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~--~~--~t~vty 161 (197)
T cd08869 91 QYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCG--SG--KSRVTH 161 (197)
T ss_pred EEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECC--CC--CeEEEE
Confidence 98876 5789999999999999864 678999999999995 6666 999999999999999997 34 799999
Q ss_pred EEeeecCCCccccchhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 356 LMQIDLKGWGVGYLSMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 356 i~~vD~kGwips~v~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
++++||+||+|.|+++...+++. ..+..||+-|.+
T Consensus 162 ~~~~Dp~G~iP~wl~N~~~~~~~---~~~~~l~~~~~~ 196 (197)
T cd08869 162 ICRVDLRGRSPEWYNKVYGHLCA---RELLRIRDSFRQ 196 (197)
T ss_pred EEEECCCCCCCceeecchHhHHH---HHHHHHHhhccC
Confidence 99999999999998777766644 347888887753
No 10
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=4.2e-33 Score=267.05 Aligned_cols=182 Identities=20% Similarity=0.315 Sum_probs=156.4
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcC-CCCccchhhccceeEEEEEecCceeEE
Q 011686 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSM-DGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (479)
Q Consensus 199 ~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dl-d~~R~eWD~~~~~~evVe~iDd~tdIV 277 (479)
.+|++.+.++|++||.+... +. ..+.||++|+|++++++|+++|.+. ...|.+||..+.++++|++++++++|+
T Consensus 22 ~~W~~~~~~~~i~v~~~~~~-~~----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 22 DGWKVLKTVKNITVSWKPST-EF----TGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred CCcEEEEcCCCcEEEEecCC-CC----CCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEE
Confidence 79999999999999999644 22 1468999999999999999999982 237999999999999999999999997
Q ss_pred EEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEE
Q 011686 278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (479)
Q Consensus 278 Y~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~ 357 (479)
|..+ +....+++++||||++++|++.++|.|+++.+||+||.+||.+|||||++..|||+|+|++++++ +|.++|++
T Consensus 97 ~~~~-p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~--~t~~~~~~ 173 (206)
T cd08867 97 RTIT-PSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPD--KSFLVLYV 173 (206)
T ss_pred EEEc-cccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCC--ceEEEEEE
Confidence 7743 22123469999999999999998889999999999999999999999999999999999985443 79999999
Q ss_pred eeecCCCcccc-chhhhhHHHHHHHHHHHHHHHHH
Q 011686 358 QIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLREWF 391 (479)
Q Consensus 358 ~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe~~ 391 (479)
++||+||+|.| +|+++.+.+ +..+..||+++
T Consensus 174 ~~DpkG~iP~~lvn~~~~~~~---~~~~~~lr~~~ 205 (206)
T cd08867 174 QTDLRGMIPQSLVESAMPSNL---VNFYTDLVKGV 205 (206)
T ss_pred EeccCCCCcHHHHHhhhhhhH---HHHHHHHHHhc
Confidence 99999999977 488887775 45577788875
No 11
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=100.00 E-value=1.8e-32 Score=263.61 Aligned_cols=185 Identities=17% Similarity=0.245 Sum_probs=160.5
Q ss_pred ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEec
Q 011686 192 NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (479)
Q Consensus 192 ~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iD 271 (479)
+.+..+.++|++.++++||+||+++.+++ ...||++++|++++++|+++|.|+. .|++||.++.++++|++++
T Consensus 15 l~~~~~~~gW~l~~~~~gI~Vy~k~~~~~------~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~vl~~~~ 87 (205)
T cd08874 15 LDQCQATAGWSYQCLEKDVVIYYKVFNGT------YHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARIHKTFT 87 (205)
T ss_pred HHhhhccCCcEEEecCCCEEEEEecCCCC------cceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheeeeeecC
Confidence 77788899999999999999999986632 4689999999999999999999986 6999999999999999999
Q ss_pred CceeEEEEEEecccCCCcc--CCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCC-CeEEEEEcceEEEEEeCCCC-CC
Q 011686 272 GHTAILYHRLQLDWFPMFV--WPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQP-GYVRAHVESGGFNISPLKPR-NG 347 (479)
Q Consensus 272 d~tdIVY~~~~~~~~p~~v--s~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~-G~VRa~i~~gGwvI~Pl~~~-~g 347 (479)
+++.|+|+++. +||+. ++||||+++.|+.. ++.++|..+||+||.+|+.+ |||||..++|||+|+|++.+ +|
T Consensus 88 ~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~~-~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~ 163 (205)
T cd08874 88 EDICLVYLVHE---TPLCLLKQPRDFCCLQVEAKE-GELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQ 163 (205)
T ss_pred CCeEEEEEEec---CCCCCCCCCCeEEEEEEEEEC-CCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCC
Confidence 99999888765 45656 99999999988775 45566999999999999996 99999999999999999442 33
Q ss_pred CCeeEEEEEEeeecC-CCccccc-hhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 348 RPRTQVQHLMQIDLK-GWGVGYL-SMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 348 ~~~t~Vt~i~~vD~k-Gwips~v-~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
+|+|||++|+||+ |.+|.|+ |++....+ ..++.|+.|+++
T Consensus 164 --~t~vty~~q~DPggg~iP~~l~N~~~~~~p----~~~~~~~~~~~~ 205 (205)
T cd08874 164 --YTRVIYIAQVALCGPDVPAQLLSSLSKRQP----LVIARLALFLEA 205 (205)
T ss_pred --cEEEEEEEEECCCCCCCCHHHHhHHHHhcc----HHHHHHHHHhhC
Confidence 8999999999999 7999875 77776654 458889988763
No 12
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=4.4e-32 Score=262.81 Aligned_cols=186 Identities=20% Similarity=0.343 Sum_probs=161.2
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhhccceeEEEEEecCcee
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV-~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~td 275 (479)
...+|+++.+++||+||++..++ +.++++|+++++ ++++++++++|+|.+ .|++||+++.++++|+++|++++
T Consensus 21 ~~~~W~~~~~~~gi~iy~r~~~~-----~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~~~ 94 (222)
T cd08871 21 STDGWKLKYNKNNVKVWTKNPEN-----SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPNND 94 (222)
T ss_pred CCCCcEEEEcCCCeEEEEeeCCC-----CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCCCE
Confidence 44689999999999999998763 236899999987 689999999999975 69999999999999999999999
Q ss_pred EEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEE
Q 011686 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (479)
Q Consensus 276 IVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~ 355 (479)
|+|..++ +||++++||||++|.++..+ |.|+|+.+|+.|+.+|+.+|||||.+..+||+|+|++ ++ +|.|||
T Consensus 95 i~y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~--~~--~t~vt~ 166 (222)
T cd08871 95 IGYYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG--PK--GCTLTY 166 (222)
T ss_pred EEEEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC--CC--CEEEEE
Confidence 9999887 67899999999999998765 8899999999999999999999999999999999997 33 799999
Q ss_pred EEeeecCCCccccc-hhhhhHHHHHH----HHHHHHHHHHHhhcCC
Q 011686 356 LMQIDLKGWGVGYL-SMFQQHCLFQM----LNSVAGLREWFAQTDE 396 (479)
Q Consensus 356 i~~vD~kGwips~v-~~~~~s~~~~~----l~~va~LRe~~~~~~~ 396 (479)
++++||+||||.|+ |.+..+.+..+ ...+..++||.++++.
T Consensus 167 ~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~ 212 (222)
T cd08871 167 VTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNP 212 (222)
T ss_pred EEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999875 77776654444 3555566777766654
No 13
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=2.2e-32 Score=263.52 Aligned_cols=183 Identities=21% Similarity=0.334 Sum_probs=156.1
Q ss_pred cCCCcEEEE-eeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHH-HHHhcCCCCccchhhccceeEEEEEecCce
Q 011686 197 SRKHWRLLQ-CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVDGHT 274 (479)
Q Consensus 197 a~~~Wkl~~-~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf-~lL~dld~~R~eWD~~~~~~evVe~iDd~t 274 (479)
..++|++.+ .++|++||++..++ + +++||++++|++++++|+ .++.|++ .+++|+.++.++++|+++|+++
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~-----~-~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~~ 95 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD-----I-GKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKDT 95 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC-----C-CcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCCc
Confidence 346999995 69999999988762 1 389999999999999999 5555654 6899999999999999999999
Q ss_pred eEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEE
Q 011686 275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQ 354 (479)
Q Consensus 275 dIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt 354 (479)
.|+|. ...+|..|++++||||++++|++. ++.++++..|+.|+.+|+++|||||+...|||+|+|++++++ +|.|+
T Consensus 96 ~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~--~t~v~ 171 (209)
T cd08905 96 LITHE-VAAETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPS--KTKLT 171 (209)
T ss_pred eEEEE-EeccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCC--ceEEE
Confidence 99887 454433355999999999999887 456778889999999999999999999999999999975434 79999
Q ss_pred EEEeeecCCCcccc-chhhhhHHHHHHHHHHHHHHHHHhh
Q 011686 355 HLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLREWFAQ 393 (479)
Q Consensus 355 ~i~~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe~~~~ 393 (479)
|++++|||||+|.| +|+++.+.+ ++++.+||+++..
T Consensus 172 ~~~~~DpkG~iP~~lvN~~~~~~~---~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWLPKSIINQVLSQTQ---VDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCCCHHHHHHHhHHhH---HHHHHHHHHHHhc
Confidence 99999999999987 488888875 4568899998763
No 14
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=4.6e-32 Score=260.25 Aligned_cols=176 Identities=25% Similarity=0.311 Sum_probs=153.4
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEE
Q 011686 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (479)
Q Consensus 199 ~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY 278 (479)
.+|..+...|++.++.+....+ ..++++|+++.|+++|++|+..+.+ .|++||.++.++++|+++|++++|+|
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~----~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~~ 99 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDG----NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVYQ 99 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCC----CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEEE
Confidence 5788888888888854433312 2478999999999999999998865 59999999999999999999999999
Q ss_pred EEEecccCCCccCCceEEEEEEEEEc-CCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEE
Q 011686 279 HRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (479)
Q Consensus 279 ~~~~~~~~p~~vs~RDFV~lr~~r~~-edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~ 357 (479)
+.++ .|+|+++||||++|+|++. ++|+|+|+.+||+|+++|+. |||||....+||+|+|++ +| +|+|||++
T Consensus 100 y~~~---~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~--~g--~trvt~i~ 171 (205)
T cd08909 100 YVLN---CMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCG--SG--KSRLTHIC 171 (205)
T ss_pred EEee---cCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECC--CC--CEEEEEEE
Confidence 9987 4568999999999999887 68999999999999999995 999999999999999997 34 79999999
Q ss_pred eeecCCCccccchhhhhHHHHHHHHHHHHHHHHHh
Q 011686 358 QIDLKGWGVGYLSMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 358 ~vD~kGwips~v~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
++|||||+|.|+++...+++. ..+..||+-|.
T Consensus 172 ~vDpkG~~P~W~~n~~g~~~~---~~~~~~r~sf~ 203 (205)
T cd08909 172 RVDLKGHSPEWYNKGFGHLCA---AEAARIRNSFQ 203 (205)
T ss_pred EecCCCCChHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 999999999999999888754 34778888775
No 15
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=5.4e-32 Score=257.01 Aligned_cols=180 Identities=20% Similarity=0.320 Sum_probs=156.8
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeE
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdI 276 (479)
..++|++.+.++|+.||.++.+ ++. +++||++|+|+..+++|++.|.+.. .|.+||++++++++||+||++|.|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~-ef~----gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~I 94 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSE-EFG----GYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCCV 94 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCC-cCC----CceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcEE
Confidence 4579999999999999999775 333 7899999999999999999998854 699999999999999999999999
Q ss_pred EEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEE
Q 011686 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHL 356 (479)
Q Consensus 277 VY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i 356 (479)
++++ ++..+...++|||||.++++.+.+||. +.+..|++|+..|| |||||+++++||++.|+++++ +.|.+|++
T Consensus 95 ~~yv-t~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p--~k~~~t~~ 168 (202)
T cd08902 95 MRYT-TAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNP--SHSLLTGY 168 (202)
T ss_pred EEEE-cccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCC--CceEEEEE
Confidence 7444 455466799999999999998888875 67799999998888 999999999999999999654 38999999
Q ss_pred EeeecCCCcc-ccchhhhhHHHHHHHHHHHHHHHHH
Q 011686 357 MQIDLKGWGV-GYLSMFQQHCLFQMLNSVAGLREWF 391 (479)
Q Consensus 357 ~~vD~kGwip-s~v~~~~~s~~~~~l~~va~LRe~~ 391 (479)
+++||+||+| +++++++++. |++....||+.+
T Consensus 169 lq~DLkG~LPqsiIdq~~~~~---~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQSAVDTAMAST---LVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHHHHHHHhhHH---HHHHHHHHHHhc
Confidence 9999999996 6789999887 455678888765
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=2.1e-31 Score=253.07 Aligned_cols=176 Identities=34% Similarity=0.492 Sum_probs=153.3
Q ss_pred cccCCCcEEEEe-eCCeEEEEEecccCCCCccccceEEEEEEecccHHH-HHHHHhcCCCCccchhhccceeEEEEEecC
Q 011686 195 AFSRKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE-IFELVMSMDGTRYEWDCSFQYGSLVEEVDG 272 (479)
Q Consensus 195 ~~a~~~Wkl~~~-~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~-Vf~lL~dld~~R~eWD~~~~~~evVe~iDd 272 (479)
.....+|++..+ ++|+.+|++..+++ +.+..||++++|++++++ +.+++.|+. .|++||+.+.++++|+++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 15 AASEPGWVLSSENENGDEVRSILSPGR----SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred hCCCCccEEccccCCcceEEEEccCCC----CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECC
Confidence 345678999997 89999999976522 237899999999999987 556777764 69999999999999999999
Q ss_pred ceeEEEEEEecccCCC-ccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCee
Q 011686 273 HTAILYHRLQLDWFPM-FVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRT 351 (479)
Q Consensus 273 ~tdIVY~~~~~~~~p~-~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t 351 (479)
++.|+|..++ +|| |+++||||++|+|+..++|.|+|+.+|+.|+.+|+.+|+|||++..|||+|+|+++ + .|
T Consensus 90 ~~~i~~~~~~---~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~--~--~t 162 (206)
T smart00234 90 GTVIYHYVSK---FVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN--G--PS 162 (206)
T ss_pred CCeEEEEEEe---cccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC--C--Ce
Confidence 9999888776 556 99999999999999988899999999999999999999999999999999999974 3 59
Q ss_pred EEEEEEeeecCCCcccc-chhhhhHHHHHHHH
Q 011686 352 QVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLN 382 (479)
Q Consensus 352 ~Vt~i~~vD~kGwips~-v~~~~~s~~~~~l~ 382 (479)
.|||+.++||+||+|.| +|.+..+.+..++.
T Consensus 163 ~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 163 KVTWVSHADLKGWLPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred EEEEEEEEecCCCccceeehhhhhhhHHHHHH
Confidence 99999999999999877 58888888766644
No 17
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=1.3e-30 Score=250.85 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=155.2
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhhccceeEEEEEecC-cee
Q 011686 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG-HTA 275 (479)
Q Consensus 198 ~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV-~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd-~td 275 (479)
.++|+++.+++||+||++..++. .+..||+++++ ++|+++++++|+|.+ .|.+||.++.++++|++.++ +++
T Consensus 20 ~~~W~l~~~~~~i~Vy~r~~~~s-----~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~~~ 93 (207)
T cd08911 20 PDGWEPFIEKKDMLVWRREHPGT-----GLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETGSE 93 (207)
T ss_pred CCCcEEEEEcCceEEEEeccCCC-----CcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCCCE
Confidence 46799999999999999987732 36799999977 899999999999986 69999999999999999755 899
Q ss_pred EEEEEEecccCCCccCCceEEEEEEEEEc-CCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEE
Q 011686 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQ 354 (479)
Q Consensus 276 IVY~~~~~~~~p~~vs~RDFV~lr~~r~~-edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt 354 (479)
|+|+.++ +|||+++||||+.|.+++. ++|.|+|+.+||.||.+|+.+||||+....|+|+|+|+++. +..+|.++
T Consensus 94 i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~-~~~~~~~~ 169 (207)
T cd08911 94 IIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF-DEPGFEFV 169 (207)
T ss_pred EEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC-CCCCeEEE
Confidence 9999887 8899999999999998777 45678999999999999999999999999999999999631 11269999
Q ss_pred EEEeeecCCCcccc-chhhhhHHHHHHHHHHHHHHHH
Q 011686 355 HLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVAGLREW 390 (479)
Q Consensus 355 ~i~~vD~kGwips~-v~~~~~s~~~~~l~~va~LRe~ 390 (479)
++.+.|||||||+| +|.++.+.+..+ +.+|++-
T Consensus 170 ~~~~~dPgG~IP~~lvN~~~~~~~~~~---l~~l~~a 203 (207)
T cd08911 170 LTYFDNPGVNIPSYITSWVAMSGMPDF---LERLRNA 203 (207)
T ss_pred EEEEeCCCCccCHHHHHHHHHhhccHH---HHHHHHH
Confidence 99999999999986 588888876655 4455543
No 18
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=1.8e-30 Score=254.60 Aligned_cols=186 Identities=16% Similarity=0.260 Sum_probs=151.5
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeE
Q 011686 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (479)
Q Consensus 198 ~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~-a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdI 276 (479)
..+|+++.+++||+||++..+..+. ....+||+++|+ +++++++++|.|.+ .|.+||.++.++++|++++++++|
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~---~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~~I 100 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGV---VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDTLI 100 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCc---eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCCEE
Confidence 3489999999999999998773211 112699999999 89999999999976 799999999999999999999999
Q ss_pred EEEEEecccCCCccCCceEEEEEEEEEcCC-------CcEEEEEEeccCCCCCCCCCeEEEEEc----ceEEEEEeCC--
Q 011686 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-------GSYVVLFRSREHENCGPQPGYVRAHVE----SGGFNISPLK-- 343 (479)
Q Consensus 277 VY~~~~~~~~p~~vs~RDFV~lr~~r~~ed-------GsyvI~~~SV~hp~~Pp~~G~VRa~i~----~gGwvI~Pl~-- 343 (479)
+|..++ +|||+++||||++++|++.++ +.|+|+..|+.||.+|+.+||||+... +++|++.|.+
T Consensus 101 ~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~ 177 (235)
T cd08872 101 FHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQ 177 (235)
T ss_pred EEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcc
Confidence 998877 789999999999999998754 578999999999999999999999973 3444444422
Q ss_pred ---CCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHHhhcC
Q 011686 344 ---PRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWFAQTD 395 (479)
Q Consensus 344 ---~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~~~~~ 395 (479)
.+++ +|.|||++++|||||+|+|+ |.+.+...- ..++.|-.|+..+-
T Consensus 178 ~~t~~~~--~~~ity~~~~dPgG~iP~wvvn~~~k~~~P---~~l~~~~~~~~~~~ 228 (235)
T cd08872 178 EITRDNI--LCKITYVANVNPGGWAPASVLRAVYKREYP---KFLKRFTSYVQEKT 228 (235)
T ss_pred cccCCCC--eEEEEEEEEeCCCCCccHHHHHHHHHhhch---HHHHHHHHHHHHhc
Confidence 1133 89999999999999999885 666666543 34566666665543
No 19
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.97 E-value=1.4e-28 Score=233.16 Aligned_cols=186 Identities=31% Similarity=0.549 Sum_probs=151.9
Q ss_pred ccCCCcEEEEeeCCeEE-EEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCce
Q 011686 196 FSRKHWRLLQCQNGLRI-FEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT 274 (479)
Q Consensus 196 ~a~~~Wkl~~~~nGV~V-y~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~t 274 (479)
....+|++..+.++..+ |.+..+++. ..++.+|++++|+++++++|..|++.. . +||+.+.++++|+++++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~~ 89 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSDS---CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDEDT 89 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSSS---TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETTE
T ss_pred cCCCCCeEeEccCCCeEEEEEeCcccc---ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCCC
Confidence 35679999995555544 444333121 137899999999999999999998732 3 9999999999999999999
Q ss_pred eEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCC-CCCeEEEEEcceEEEEEeCCCCCCCCeeEE
Q 011686 275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGP-QPGYVRAHVESGGFNISPLKPRNGRPRTQV 353 (479)
Q Consensus 275 dIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp-~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~V 353 (479)
+|+|..++.. +|+|+++||||++|++++..+|.|+|+.+||+||.+|+ .+|+|||.+..+||+|+|+++ | .|.|
T Consensus 90 ~i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~--~--~~~v 164 (206)
T PF01852_consen 90 DIVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD--G--RTRV 164 (206)
T ss_dssp EEEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT--C--EEEE
T ss_pred eEEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC--C--CceE
Confidence 9999887733 23499999999999999988999999999999999999 999999999999999999984 3 6999
Q ss_pred EEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHHhhcC
Q 011686 354 QHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWFAQTD 395 (479)
Q Consensus 354 t~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~~~~~ 395 (479)
||+.++||+||+|.|+ |.+..+.+. +.++.||+.++...
T Consensus 165 t~~~~~D~~G~iP~~~~n~~~~~~~~---~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 165 TYVSQVDPKGWIPSWLVNMVVKSQPP---NFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH---HHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCChHHHHHHHHHHhHH---HHHHHHHHHHHHhc
Confidence 9999999999998765 777776654 44677888777654
No 20
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.97 E-value=3.7e-29 Score=240.83 Aligned_cols=177 Identities=21% Similarity=0.311 Sum_probs=150.4
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhhccceeEEEEEecCcee
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~-a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~td 275 (479)
...+|+++.+++||+||++..++. .+..||++++++ +++++++++|+|.+ .|.+||..+.+ +++..+++++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~s-----~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~~ 94 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQS-----GLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGET 94 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCCC-----CcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCCE
Confidence 346899999999999999977632 367999999998 79999999999976 69999999986 6788888899
Q ss_pred EEEEEEecccCCCccCCceEEEEEEEEEc-CCC--cEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeE
Q 011686 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG--SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQ 352 (479)
Q Consensus 276 IVY~~~~~~~~p~~vs~RDFV~lr~~r~~-edG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~ 352 (479)
|+|+.++ +|||+++||||++|.++.. .+| .++|+.+|+.||.+|+.+||||+....|+|+|+|.+. + +|.
T Consensus 95 i~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~--~--~t~ 167 (207)
T cd08910 95 VIYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK--K--GSK 167 (207)
T ss_pred EEEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC--C--ceE
Confidence 9999987 7899999999999877643 233 4678899999999999999999999999999999863 3 699
Q ss_pred EEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHH
Q 011686 353 VQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWF 391 (479)
Q Consensus 353 Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~ 391 (479)
++|+.+.||+|++|.|+ |.+....+..+ +..||+-.
T Consensus 168 i~~~~~~DPgG~IP~wlvN~~~~~~~~~~---l~~l~ka~ 204 (207)
T cd08910 168 VFMYYFDNPGGMIPSWLINWAAKNGVPNF---LKDMQKAC 204 (207)
T ss_pred EEEEEEeCCCCcchHHHHHHHHHHhhHHH---HHHHHHHH
Confidence 99999999999999875 88877775554 55566544
No 21
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=2.8e-29 Score=238.94 Aligned_cols=177 Identities=22% Similarity=0.304 Sum_probs=153.0
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHH-HHHHhcCCCCccchhhccceeEEEEEecCcee
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEI-FELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~V-f~lL~dld~~R~eWD~~~~~~evVe~iDd~td 275 (479)
...||......+|+.|+.+... ++. .++.+|+...|+++|.+| +++|.+ |..||.++.+.++|++||++++
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~-d~~---~l~lwk~s~ei~~~p~~vl~rvL~d----R~~WD~~m~e~~~Ie~Ld~n~d 96 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVG-DGH---PLRLWKVSTEVEAPPSVVLQRVLRE----RHLWDEDLLHSQVIEALENNTE 96 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCC-CCC---ceEEEEEEEEecCCCHHHHHHHhhc----hhhhhHHHHhhhhheeecCCCE
Confidence 3479999999999999888654 222 378999999999865554 566643 9999999999999999999999
Q ss_pred EEEEEEecccCCCccCCceEEEEEEEEEc-CCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEE
Q 011686 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQ 354 (479)
Q Consensus 276 IVY~~~~~~~~p~~vs~RDFV~lr~~r~~-edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt 354 (479)
|.|+.++ .|.|+++||||++|.|+.. +.|.|+|+.+||+|++.||.+| |||..+.+||+|+|.+ +| +|.||
T Consensus 97 I~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g--~g--~s~lt 168 (205)
T cd08907 97 VYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCG--MG--RSRLT 168 (205)
T ss_pred EEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECC--CC--CeEEE
Confidence 9999887 5678999999999999864 5678999999999999999999 9999999999999997 34 79999
Q ss_pred EEEeeecCCCccccchhhhhHHHHHHHHHHHHHHHHHh
Q 011686 355 HLMQIDLKGWGVGYLSMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 355 ~i~~vD~kGwips~v~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
|+.++|++|++|.|+|+...+++. ..+..||+-|.
T Consensus 169 yi~rvD~rG~~P~Wynk~~g~~~a---~~l~~ir~sF~ 203 (205)
T cd08907 169 HICRADLRGRSPDWYNKVFGHLCA---MEVARIRDSFP 203 (205)
T ss_pred EEEEeCCCCCCcHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 999999999999999999888744 34778888775
No 22
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.97 E-value=7.3e-29 Score=238.66 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=155.3
Q ss_pred CCcEEEEeeCC----eEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhhccceeEEEEEecC-
Q 011686 199 KHWRLLQCQNG----LRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG- 272 (479)
Q Consensus 199 ~~Wkl~~~~nG----V~Vy~r~~~~~~~~~~~~~~~KavgvV-~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd- 272 (479)
.+|+++.+++| ++||++..++. .+..||+++++ ++|+++++++|+|.+ .|++||.++.++++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~s-----~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~~ 95 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKGT-----GLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEKS 95 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCCC-----CceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCCC
Confidence 68999999999 99999987632 36799999999 569999999999976 69999999999999998654
Q ss_pred ceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeE
Q 011686 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQ 352 (479)
Q Consensus 273 ~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~ 352 (479)
+++|+|+.++ +|||+++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....|+|+|+|++.+++ +|.
T Consensus 96 ~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~--~t~ 169 (209)
T cd08870 96 GTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQ--GSA 169 (209)
T ss_pred CcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCC--ceE
Confidence 5899999987 889999999999998887768899999999999999999 9999999999999999952233 799
Q ss_pred EEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHHh
Q 011686 353 VQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 353 Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
++++++.||+|+||.|+ |.+..+.+.. ++.+||+-+.
T Consensus 170 ~~~~~~~dp~G~IP~wlvN~~~~~~~~~---~l~~l~~a~~ 207 (209)
T cd08870 170 CEVTYFHNPDGGIPRELAKLAVKRGMPG---FLKKLENALR 207 (209)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHhhhHH---HHHHHHHHHh
Confidence 99999999999999875 8877777544 4666776553
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.96 E-value=6.8e-28 Score=223.58 Aligned_cols=169 Identities=36% Similarity=0.626 Sum_probs=151.4
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEE
Q 011686 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (479)
Q Consensus 199 ~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY 278 (479)
.+|+++.+++|+++|.+..+.. ....+|++++|++++++|+++|++.+ .|++||+.+.++++|+.++++..|+|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~~-----~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~ 88 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYEDS-----GLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDIIY 88 (193)
T ss_pred CCeEEEEECCcEEEEEecCCCC-----CceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEEE
Confidence 4899999999999999987632 36899999999999999999999865 69999999999999999999999999
Q ss_pred EEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEe
Q 011686 279 HRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQ 358 (479)
Q Consensus 279 ~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~ 358 (479)
..++ +|||+++||||+++.+...++|.++++.+|++|+.+|+.+++|||.+..+||+|+|++ ++ .|.|||+++
T Consensus 89 ~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~--~~~vt~~~~ 161 (193)
T cd00177 89 YKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PG--KTKVTYVLQ 161 (193)
T ss_pred EEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CC--CEEEEEEEe
Confidence 9987 6788999999999999888778999999999999999999999999999999999995 33 799999999
Q ss_pred eecCCCcccc-chhhhhHHHHHH
Q 011686 359 IDLKGWGVGY-LSMFQQHCLFQM 380 (479)
Q Consensus 359 vD~kGwips~-v~~~~~s~~~~~ 380 (479)
+||+||+|.+ ++++....+..+
T Consensus 162 ~D~~g~iP~~~~~~~~~~~~~~~ 184 (193)
T cd00177 162 VDPKGSIPKSLVNSAAKKQLASF 184 (193)
T ss_pred eCCCCCccHHHHHhhhhhccHHH
Confidence 9999999866 477776665544
No 24
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=4.5e-28 Score=232.72 Aligned_cols=175 Identities=22% Similarity=0.285 Sum_probs=150.3
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEE
Q 011686 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (479)
Q Consensus 199 ~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY 278 (479)
.+|..+...|++.+..+....+ +.++.+|+++.|+++|++|+.+|.+ . |++||..+.++++|+++|++++|+|
T Consensus 27 k~w~~~~~~~~~el~~~k~~~g----s~l~~~r~~~~i~a~~~~vl~~lld--~-~~~Wd~~~~e~~vIe~ld~~~~I~Y 99 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVSEG----PPLRLWRTTIEVPAAPEEILKRLLK--E-QHLWDVDLLDSKVIEILDSQTEIYQ 99 (204)
T ss_pred cCCcccCCCCcEEEEEeccCCC----CCcEEEEEEEEeCCCHHHHHHHHHh--h-HHHHHHHhhheEeeEecCCCceEEE
Confidence 4777777788888754433312 3478999999999999999999976 2 8999999999999999999999999
Q ss_pred EEEecccCCCccCCceEEEEEEEEEc-CCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEE
Q 011686 279 HRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (479)
Q Consensus 279 ~~~~~~~~p~~vs~RDFV~lr~~r~~-edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~ 357 (479)
++++ +|||+++||||++|.|+.. ++|.++|...|+.|+.+|+. +|||....|||+|+|++ +| +|.|||++
T Consensus 100 y~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g--~g--~t~vtyi~ 170 (204)
T cd08908 100 YVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCG--SG--KSKLTYMC 170 (204)
T ss_pred EEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECC--CC--cEEEEEEE
Confidence 9887 6799999999999998763 77899999999999999966 79999999999999997 34 89999999
Q ss_pred eeecCCCccccchhhhhHHHHHHHHHHHHHHHHHh
Q 011686 358 QIDLKGWGVGYLSMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 358 ~vD~kGwips~v~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
++||+|++|.|+.+...+++. ..+..||+-|.
T Consensus 171 ~~DPgG~iP~W~~N~~g~~~~---~~~~~~r~sf~ 202 (204)
T cd08908 171 RIDLRGHMPEWYTKSFGHLCA---AEVVKIRDSFS 202 (204)
T ss_pred EeCCCCCCcHHHHhhHHHHHH---HHHHHHHhhcc
Confidence 999999999999777777744 34778888774
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=1.1e-27 Score=226.09 Aligned_cols=178 Identities=22% Similarity=0.405 Sum_probs=154.3
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeE
Q 011686 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (479)
Q Consensus 197 a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdI 276 (479)
+..+|+++.+++|++||++..+++ ....+|++++|+++|++|++++.|++ .|++||+.+.++++|++++++..+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~~-----~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~i 88 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEGS-----PLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNERS 88 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCCC-----CeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcEE
Confidence 445699999999999999987632 25799999999999999999999986 689999999999999999988999
Q ss_pred EEEEEecccCCCccCCceEEEEEEEEEcC-CCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEE
Q 011686 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (479)
Q Consensus 277 VY~~~~~~~~p~~vs~RDFV~lr~~r~~e-dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~ 355 (479)
+|..++ +||++++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....|||.|+|+++ + +|.|+|
T Consensus 89 ~~~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~--~--~t~vt~ 160 (195)
T cd08876 89 VYTVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN--G--KTRVTY 160 (195)
T ss_pred EEEEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC--C--eEEEEE
Confidence 999887 67889999999988776653 78999999999988 899999999999999999999973 3 799999
Q ss_pred EEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHH
Q 011686 356 LMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWF 391 (479)
Q Consensus 356 i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~ 391 (479)
++++||+||+|.++ +.+....+.. .+++||+.+
T Consensus 161 ~~~~dp~g~iP~~lv~~~~~~~~~~---~l~~l~~~~ 194 (195)
T cd08876 161 QAYADPGGSIPGWLANAFAKDAPYN---TLENLRKQL 194 (195)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 99999999999875 7777666544 467777654
No 26
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.94 E-value=1.9e-26 Score=222.46 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=157.7
Q ss_pred ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEec
Q 011686 192 NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (479)
Q Consensus 192 ~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iD 271 (479)
..++-+.++|++..+++|++||.+..++ + ....+|++|+|+++++.++++|.|.+ .+++|++.+.++++|++++
T Consensus 15 ~~~l~~~~~W~~~~~~~~i~v~~r~~~~-~----~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~~~ 88 (215)
T cd08877 15 LKDLDESDGWTLQKESEGIRVYYKFEPD-G----SLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQLG 88 (215)
T ss_pred HhcccCCCCcEEeccCCCeEEEEEeCCC-C----CEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEeecC
Confidence 3445557899999999999999998762 2 26899999999999999999999986 6999999999999999999
Q ss_pred CceeEEEEEEecccCCCccCCceEEEEEEE-EEc-CCCcEEEEEEeccCCC---------CCCCC-CeEEEEEcceEEEE
Q 011686 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYW-RRN-DDGSYVVLFRSREHEN---------CGPQP-GYVRAHVESGGFNI 339 (479)
Q Consensus 272 d~tdIVY~~~~~~~~p~~vs~RDFV~lr~~-r~~-edGsyvI~~~SV~hp~---------~Pp~~-G~VRa~i~~gGwvI 339 (479)
..+.|+|..++ +|||+++||+|+.... ... ++|.++|+..|+.|+. +|+.+ |+||+....|||+|
T Consensus 89 ~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i 165 (215)
T cd08877 89 RADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVI 165 (215)
T ss_pred CceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEE
Confidence 99999999887 8899999999986433 233 7899999999999875 69999 99999999999999
Q ss_pred EeCCCCCCCCeeEEEEEEeeecCCC-ccccc-hhhhhHHHHHHHHHHHHHHHHHh
Q 011686 340 SPLKPRNGRPRTQVQHLMQIDLKGW-GVGYL-SMFQQHCLFQMLNSVAGLREWFA 392 (479)
Q Consensus 340 ~Pl~~~~g~~~t~Vt~i~~vD~kGw-ips~v-~~~~~s~~~~~l~~va~LRe~~~ 392 (479)
+|+++ | +|.|+|++++||+|+ +|.|+ |.+.+.++..+ +.+|++.++
T Consensus 166 ~p~~~--~--~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~---~~~l~k~~~ 213 (215)
T cd08877 166 TPISP--T--KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLL---FEKIQKAAK 213 (215)
T ss_pred EEcCC--C--CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 99973 3 799999999999999 99875 77777765554 566666554
No 27
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.89 E-value=6.5e-22 Score=189.38 Aligned_cols=189 Identities=18% Similarity=0.231 Sum_probs=153.0
Q ss_pred cccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhhccceeEEEEEec-C
Q 011686 195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-G 272 (479)
Q Consensus 195 ~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV-~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iD-d 272 (479)
.-+..+|+++.++.++.||....+.. .+..+|+.++. ++||+.|+++++|.+ .|++||.++.+.++|++.. .
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~-----g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~t 98 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT-----GLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPVT 98 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC-----CCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCCC
Confidence 34567999999999999998432211 26899999998 589999999999975 8999999999999999875 5
Q ss_pred ceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEE-eCCCCCCCCee
Q 011686 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNIS-PLKPRNGRPRT 351 (479)
Q Consensus 273 ~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~-Pl~~~~g~~~t 351 (479)
+++|+|+..+ +|.|+++||||++|.|...++..|+|+.+||.|+..|+++++||+....+||+|. |.... +..+|
T Consensus 99 g~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~-~~~~~ 174 (219)
T KOG2761|consen 99 GTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSG-DEQGC 174 (219)
T ss_pred CceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccC-CCCcc
Confidence 7889999987 7889999999999988877557799999999999999999999999999999999 55542 23478
Q ss_pred EEEEEEeeecCCCccccc-hhhhhHHHHHHH-HHHHHHHHHHhh
Q 011686 352 QVQHLMQIDLKGWGVGYL-SMFQQHCLFQML-NSVAGLREWFAQ 393 (479)
Q Consensus 352 ~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l-~~va~LRe~~~~ 393 (479)
.+++.+..|++|-+|.|+ +...+..+...+ ..-.|++.|.+.
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~ 218 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEK 218 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhc
Confidence 999999999999999875 444444332222 223556666543
No 28
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.55 E-value=1.5e-13 Score=134.15 Aligned_cols=128 Identities=20% Similarity=0.384 Sum_probs=111.9
Q ss_pred ceEEEEEEecccHHHHHHHHhcCCCCccchhh----ccceeEEEEEecCc--------eeEEEEEEecccCCCccCCceE
Q 011686 228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDC----SFQYGSLVEEVDGH--------TAILYHRLQLDWFPMFVWPRDL 295 (479)
Q Consensus 228 ~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~----~~~~~evVe~iDd~--------tdIVY~~~~~~~~p~~vs~RDF 295 (479)
-+-|+.|+|...|..+.++|||. ..|-. .+..+++++.|+.. ..++|..++.. ..++.+|||
T Consensus 60 eASR~~glV~m~~~~lVe~lmD~----~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~p--SpLVp~Re~ 133 (229)
T cd08875 60 EASRACGLVMMNAIKLVEILMDV----NKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVP--SPLVPTREF 133 (229)
T ss_pred EEEeeeEEEecCHHHHHHHHhCh----hhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccC--cccccCCeE
Confidence 46699999999999999999984 45655 99999999999754 56778887642 368899999
Q ss_pred EEEEEEEEcCCCcEEEEEEeccCC-CCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCc
Q 011686 296 CYVRYWRRNDDGSYVVLFRSREHE-NCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 365 (479)
Q Consensus 296 V~lr~~r~~edGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwi 365 (479)
+++||..+.+||+++|+-+|+++. ..|+.++++|++..++||+|+|.+ || .|+||++-|+|..-|.
T Consensus 134 ~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~--nG--~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 134 YFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMP--NG--YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECC--CC--ceEEEEEEEEeccCCc
Confidence 999999999999999999999987 688889999999999999999998 45 7999999999988874
No 29
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.41 E-value=5.2e-12 Score=122.21 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=96.7
Q ss_pred ccchhhccc--eeEEEEEecCce----eEEEEEEecccCCCccCCceEEEEEE-EEEcC-CCcEEEEEEeccCCCCC-CC
Q 011686 254 RYEWDCSFQ--YGSLVEEVDGHT----AILYHRLQLDWFPMFVWPRDLCYVRY-WRRND-DGSYVVLFRSREHENCG-PQ 324 (479)
Q Consensus 254 R~eWD~~~~--~~evVe~iDd~t----dIVY~~~~~~~~p~~vs~RDFV~lr~-~r~~e-dGsyvI~~~SV~hp~~P-p~ 324 (479)
-.+|...+. ++++|+..++.. .|+|..++ +|||+++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 348999999 899999988666 78888877 899999999999987 33333 14678889999999999 99
Q ss_pred CCeEEEEEcce-EEEEEeCCCCCCCCeeEEEEEE--eeecCCCccccc-hhhhhHHHHHHHHHHHHHHHHH
Q 011686 325 PGYVRAHVESG-GFNISPLKPRNGRPRTQVQHLM--QIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLREWF 391 (479)
Q Consensus 325 ~G~VRa~i~~g-GwvI~Pl~~~~g~~~t~Vt~i~--~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe~~ 391 (479)
+|||||.-..+ -|.+.|+.. ++ .+.|+|++ +.||+|+||.|+ |++.+.. +..-+..+-+|+
T Consensus 142 ~~~Vr~~y~SgE~~~~~p~~~-~~--~~~vew~maT~sDpGG~IP~wl~n~~~p~a---I~~Dv~~fl~W~ 206 (208)
T cd08864 142 ENAVLGRYASVEKISYLPDAD-GK--SNKVEWIMATRSDAGGNIPRWLTKLTIPKA---IAKDVPLFLDWI 206 (208)
T ss_pred CCcEEEEEEEEEEEEEcCccC-CC--cCCEEEEEEEeeCCCCcCcHHHHhccCchH---HHHhHHHHHHHh
Confidence 99999996665 566667642 22 34566666 999999999986 6665554 333345555554
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.35 E-value=2.2e-12 Score=134.65 Aligned_cols=167 Identities=16% Similarity=0.310 Sum_probs=130.9
Q ss_pred ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEE-EecccHHHHHHHHhcCCCCccchhhccceeEEEEEe
Q 011686 192 NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG-VVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEV 270 (479)
Q Consensus 192 ~~~~~a~~~Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~Kavg-vV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~i 270 (479)
+.++.....|+++.+..-+++|++..+.++. ..-.+|+.- ++-+++.++..++.+.+ .|.+|+..+..+.|||+|
T Consensus 396 ~~~~g~d~nwqlFaeegemkmy~re~eeng~---~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~vve~i 471 (611)
T KOG1739|consen 396 LQDVGGDANWQLFAEEGEMKMYRREVEENGI---VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFHVVETI 471 (611)
T ss_pred cccccccchhhhhcccCCccccceeeccCCc---ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhceeeeee
Confidence 4445556679999999999999998763322 233556654 34468999999999876 699999999999999999
Q ss_pred cCceeEEEEEEecccCCCccCCceEEEEEEEEEc----CCC--cEEEEEEeccCCCCCCCCCeEEEEEcceEEEE-----
Q 011686 271 DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN----DDG--SYVVLFRSREHENCGPQPGYVRAHVESGGFNI----- 339 (479)
Q Consensus 271 Dd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~----edG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI----- 339 (479)
.+++-|+|++.+ .+ ||.++||.+++.++|+- ++| .|++|.+||+|.+.|-....||+.+..+--.=
T Consensus 472 s~d~~~~~qthk-rv--wpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~ 548 (611)
T KOG1739|consen 472 SDDAIIIYQTHK-RV--WPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSP 548 (611)
T ss_pred cCCeEEEEeccc-cc--CCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCC
Confidence 999999888754 43 89999999999888875 334 79999999999999999999999875432211
Q ss_pred ----EeCCCCCCCCeeEEEEEEeeecCCCccc
Q 011686 340 ----SPLKPRNGRPRTQVQHLMQIDLKGWGVG 367 (479)
Q Consensus 340 ----~Pl~~~~g~~~t~Vt~i~~vD~kGwips 367 (479)
+|+.. +...|.+||+.+++|+||.|.
T Consensus 549 p~~~q~l~r--dd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 549 PEGNQELSR--DDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred cccCCcccc--cceeEEEEEEeeeCCCCcccH
Confidence 22222 224799999999999999985
No 31
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.20 E-value=6.8e-11 Score=97.56 Aligned_cols=91 Identities=26% Similarity=0.492 Sum_probs=70.5
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccccc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~ 86 (479)
|||||++.+.. ...+ ++|||||.+..|.|||.+......|+....|.++....+.+. -++|+|.++. +
T Consensus 1 ~~G~L~k~~~~--~~~W-~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~~--~ 68 (91)
T cd01246 1 VEGWLLKWTNY--LKGW-QKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSD-------DKCFTIDTGG--D 68 (91)
T ss_pred CeEEEEEeccc--CCCc-eeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCCC-------CcEEEEEcCC--C
Confidence 79999998653 3455 999999999999999987653347877788887654444332 3677777542 3
Q ss_pred ceeeecccCHHHHHHHHHHHHHH
Q 011686 87 HRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 87 ~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+.+.|.|.|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 78999999999999999999876
No 32
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.07 E-value=5.8e-10 Score=92.15 Aligned_cols=99 Identities=20% Similarity=0.381 Sum_probs=77.8
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeecCcce--eeCeEEEEEEEeec
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLSVYNK 82 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~g~~~--~~~~~~yv~~~yn~ 82 (479)
.++|||++.+ .....| ++|||||.+..|.|||...... ..|.....++.. .|.+..... .....-++|.|.++
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999987 555666 9999999999999999887433 778777777776 777655542 22334456677766
Q ss_pred ccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 83 KEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 83 ~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
.. ..+.|.|.|.+|...|+.+|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 65 789999999999999999999995
No 33
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.05 E-value=6.6e-10 Score=95.93 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=69.5
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecC---ceeEeecCcceeeCeEEEEEEEeecc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG---NCRVEDRGLKTHHGHMVYVLSVYNKK 83 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~---~~~v~d~g~~~~~~~~~yv~~~yn~~ 83 (479)
.||||..-|... ...| ++|||||.++.|.|||.+.. ..|.-...++. .+.|.+.-.....++..|.|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~w-kkRwFvL~~~~L~Yyk~~~d--~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGF-KKRWFTLDDRRLMYFKDPLD--AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCC-CCCc-eeEEEEEeCCEEEEECCCCC--cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-
Confidence 489999977643 2445 99999999999999986543 34543333333 2345432111112334468888775
Q ss_pred cccceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 84 EKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 84 ~~~~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
++...|.|.|.+|+..||+||+.||+.
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999764
No 34
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.04 E-value=1.8e-09 Score=87.44 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=78.6
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
.++|||++...+ +.+-.++|||+|.++.|.||+..+... ..|.....|++. .|........++ .-+.|.|.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~-~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAK-KPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCC-CceEEEEEecCC
Confidence 589999997776 555669999999999999999988755 677788888887 666555443222 236777776544
Q ss_pred ccceeeecccCHHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
+.+.|.|.|.+|+.+|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999984
No 35
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.03 E-value=9.1e-10 Score=93.04 Aligned_cols=94 Identities=19% Similarity=0.423 Sum_probs=67.9
Q ss_pred eeeeeEEEeeec-c-eeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecc
Q 011686 6 VYEGWMVRYGRR-K-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (479)
Q Consensus 6 ~~~gw~~~~~~~-~-~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~ 83 (479)
.++|||++-+.. + ....| ++|||||.++.|.|||.+.. ..|.....+.++ .|+.. .+ .+.-|+|.|-++.
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~--~~~~~~I~L~~~-~v~~~-~~---~~k~~~F~I~~~~ 72 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQD--EKAEGLIFLSGF-TIESA-KE---VKKKYAFKVCHPV 72 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCC--CccceEEEccCC-EEEEc-hh---cCCceEEEECCCC
Confidence 379999996532 2 44477 99999999999999997654 456555555554 44421 11 1234788886432
Q ss_pred cccceeeecccCHHHHHHHHHHHHHH
Q 011686 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 84 ~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
.+.+.|+|.|.+|+.+||+||++|
T Consensus 73 --~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 73 --YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 377899999999999999999876
No 36
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.91 E-value=2e-08 Score=89.42 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=97.0
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEE
Q 011686 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (479)
Q Consensus 231 KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyv 310 (479)
+....|+||+++||++|.|.+ ..++|.+.+.++++++.-+.. ..++..+. ++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDEDE-LEAELTVG-----FGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCCCE-EEEEEEEe-----eccccEEEEEEEEec--CCCE--
Confidence 456789999999999999986 588999999999999976643 44465543 335688888654432 2332
Q ss_pred EEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHH
Q 011686 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLRE 389 (479)
Q Consensus 311 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe 389 (479)
|...++.. +.....|.|.++|+++ | +|.|+|.++.+++|.++.++ +.+....+.++ +.++++
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~--~--~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~---l~~f~~ 133 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGE--N--ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKM---VDAFEK 133 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCC--C--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45566543 2334578999999983 3 79999999999999998774 77777776555 555665
Q ss_pred HHh
Q 011686 390 WFA 392 (479)
Q Consensus 390 ~~~ 392 (479)
.+.
T Consensus 134 ~~~ 136 (138)
T cd07813 134 RAK 136 (138)
T ss_pred HHh
Confidence 544
No 37
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.84 E-value=1.9e-08 Score=89.42 Aligned_cols=98 Identities=18% Similarity=0.425 Sum_probs=69.9
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc--
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE-- 84 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~-- 84 (479)
.+|||++-|.. -..| ++|||||.++.|.|||..-. ..|..+..+. +|.|+..-. .++. +.|.|+.+.+
T Consensus 2 k~G~L~K~~~~--~~~W-kkRwfvL~~~~L~yyk~~~~--~~~~g~I~L~-~~~v~~~~~---~~~~-~~F~i~~~~~~~ 71 (125)
T cd01252 2 REGWLLKQGGR--VKTW-KRRWFILTDNCLYYFEYTTD--KEPRGIIPLE-NVSIREVED---PSKP-FCFELFSPSDKQ 71 (125)
T ss_pred cEEEEEEeCCC--CCCe-EeEEEEEECCEEEEEcCCCC--CCceEEEECC-CcEEEEccc---CCCC-eeEEEECCcccc
Confidence 58999987643 2556 99999999999999985432 4566666666 455553211 1222 5778877665
Q ss_pred ----------------ccceeeecccCHHHHHHHHHHHHHHHhhhc
Q 011686 85 ----------------KYHRITMAAFNIQEALIWKEKIELVIDQHQ 114 (479)
Q Consensus 85 ----------------~~~~~~~~~~~~~ea~~w~~a~~~a~~~~~ 114 (479)
....+.|.|.|.+|+..|+.||+.++.+..
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 224556999999999999999999976543
No 38
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.83 E-value=1.4e-08 Score=84.10 Aligned_cols=94 Identities=17% Similarity=0.352 Sum_probs=65.3
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccccc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~ 86 (479)
|+|||+.-+... ...| ++|||||.+..|.||+..+.....|+.+..+. .|.|....... +.-++|.|..+.
T Consensus 1 k~G~L~kk~~~~-~~~W-~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~-~~~v~~~~~~~---~~~~~f~i~~~~--- 71 (94)
T cd01250 1 KQGYLYKRSSKS-NKEW-KKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLR-RCTVRHNGKQP---DRRFCFEVISPT--- 71 (94)
T ss_pred CcceEEEECCCc-CCCc-eEEEEEEeCCeEEEEcCCcccccccceEEecc-ceEEecCcccc---CCceEEEEEcCC---
Confidence 689999844332 3345 99999999999999998775334454443332 24554332211 234688887543
Q ss_pred ceeeecccCHHHHHHHHHHHHHH
Q 011686 87 HRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 87 ~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+.+.|.|.|.+|+.+|+.||+++
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC
Confidence 78999999999999999999864
No 39
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.82 E-value=1.5e-08 Score=85.83 Aligned_cols=95 Identities=25% Similarity=0.367 Sum_probs=66.9
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEec--ceehhhccCCCCCCccceeeeecCceeEeec----CcceeeCeEEEEEEEe
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR----GLKTHHGHMVYVLSVY 80 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~----g~~~~~~~~~yv~~~y 80 (479)
++|||..-|. .-..| ++|||||.+ ..|.|||.... ..|..+.-+...+.|... |...+. ..-+.|.|.
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~~--~~~~g~I~L~~~~~v~~~~~~~~~~~~~-~~~~~f~i~ 74 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFED--TAEKGCIDLAEVKSVNLAQPGMGAPKHT-SRKGFFDLK 74 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCCC--CccceEEEcceeEEEeecCCCCCCCCCC-CCceEEEEE
Confidence 5899999774 45677 999999995 49999986533 566555555566666642 222211 222445553
Q ss_pred ecccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 81 NKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 81 n~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
.+.+...|.|.|.+|+..|++||+++|
T Consensus 75 ---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 75 ---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 346778999999999999999999874
No 40
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.80 E-value=2.9e-08 Score=85.79 Aligned_cols=90 Identities=22% Similarity=0.425 Sum_probs=71.7
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecc------eehhhccCCCCC---CccceeeeecCceeEeecCcceeeCeEEE
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 75 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~------~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~~~y 75 (479)
+..+|||... .++ |+|||||++. .|.|||.+..-. ..|.+.+.++.|.-|..+-. ..| + |
T Consensus 2 v~k~GyL~K~------K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~-~--~ 70 (101)
T cd01257 2 VRKSGYLRKQ------KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH-R--H 70 (101)
T ss_pred ccEEEEEeEe------cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc-C--e
Confidence 5689999985 345 8899999998 899999887533 67988888888888875322 222 2 7
Q ss_pred EEEEeecccccceeeecccCHHHHHHHHHHHHH
Q 011686 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 76 v~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
+|.|+. ++...-|+|-|.+|...|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 888877 447899999999999999999965
No 41
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.80 E-value=2.2e-08 Score=85.87 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=70.5
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEee-cCcceeeCeEEEEEEEeeccc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVED-RGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d-~g~~~~~~~~~yv~~~yn~~~ 84 (479)
..+|||..-|.+. ..| ++|||||.+..|.|||.+.. ..|+..+.+. +|.|+. .+.....|+ =++|.|..
T Consensus 3 ~k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~--~~~~~~I~L~-~~~v~~~~~~~~~~~~-~~~F~I~t--- 72 (100)
T cd01233 3 SKKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD--PVERGVINLS-TARVEHSEDQAAMVKG-PNTFAVCT--- 72 (100)
T ss_pred ceeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC--ccEeeEEEec-ccEEEEccchhhhcCC-CcEEEEEC---
Confidence 4789999977743 567 99999999999999998764 5677777777 666642 222211122 25677743
Q ss_pred ccceeeecccCHHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
.++.+.|.|.|.+|...||.||..++
T Consensus 73 ~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 47889999999999999999998773
No 42
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.80 E-value=1.6e-08 Score=87.70 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=69.4
Q ss_pred eeeEEEee--ecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCccee---eCeEEEEEEEeec
Q 011686 8 EGWMVRYG--RRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYNK 82 (479)
Q Consensus 8 ~gw~~~~~--~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~---~~~~~yv~~~yn~ 82 (479)
||||++-+ +.++|+.-.++|||||.+..|.|||.++.....|.-++.+....-|+.-.-+.. +.+.-|.|.|...
T Consensus 3 ~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~ 82 (106)
T cd01238 3 ESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD 82 (106)
T ss_pred ceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC
Confidence 89999986 445777455999999999999999987753233434444444555654333322 1123477888663
Q ss_pred ccccceeeecccCHHHHHHHHHHHHHH
Q 011686 83 KEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 83 ~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
++.+-|.|.|.+|...||+||+++
T Consensus 83 ---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 83 ---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 457788899999999999999864
No 43
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.79 E-value=2e-08 Score=85.40 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=67.3
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEec--ceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
++|||...|...+...| ++|||||++ ..|.|||.... ..|+..+-+...+.+.+...+ =+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d--~~p~G~I~L~~~~~~~~~~~~------~~~F~i~t--- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQD--AKPLGRVDLSGAAFTYDPREE------KGRFEIHS--- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCc--ccccceEECCccEEEcCCCCC------CCEEEEEc---
Confidence 46999999987667788 999999984 58999986554 456666666554444332221 13566643
Q ss_pred ccceeeecccCHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
.++...|.|.|.+|...||+||+.+
T Consensus 69 ~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987
No 44
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.78 E-value=2.9e-08 Score=83.95 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=60.5
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccccc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~ 86 (479)
++|||+..|. +-..| ++|||||++..|.|||.++.....| |.-|--.+|.|....-+ . ..|.|.. ..+
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~~~~-~G~I~L~~~~i~~~~~~----~--~~F~i~~--~~~ 68 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKSHGC-RGSIFLKKAIIAAHEFD----E--NRFDISV--NEN 68 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCcCCC-cEEEECcccEEEcCCCC----C--CEEEEEe--CCC
Confidence 5899999773 45577 9999999999999999887533333 22222223333322111 1 2344432 234
Q ss_pred ceeeecccCHHHHHHHHHHHHH
Q 011686 87 HRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 87 ~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
+...|.|.|.+|...|++||++
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 8889999999999999999975
No 45
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.71 E-value=5.3e-07 Score=80.24 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=86.1
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEE
Q 011686 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (479)
Q Consensus 231 KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyv 310 (479)
+++..|+|||++||++|.|.+ ..++|.+.+..+++++..++. ..++.......+.+.. +.-+.+.... .++....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGNR-VVLEQTGKQGILFFKF--EARVVLELRE-REEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEeeee--eEEEEEEEEE-ecCCCce
Confidence 678899999999999999986 578999999999999874433 2334331111000000 1111111111 1110111
Q ss_pred EEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHHHHH
Q 011686 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAGLRE 389 (479)
Q Consensus 311 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~LRe 389 (479)
+.++.+.. | + ....|.|.++|.+++ | +|.|+|.+++++++.+|.++ +.+....+. ..+++||+
T Consensus 77 i~~~~~~g---~-----~--~~~~g~w~~~~~~~~-~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~---~~l~~lr~ 140 (144)
T cd08866 77 LDFEMVEG---D-----F--KRFEGSWRLEPLADG-G--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLP---TNLLAIRA 140 (144)
T ss_pred EEEEEcCC---c-----h--hceEEEEEEEECCCC-C--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHH---HHHHHHHH
Confidence 22222211 0 1 234789999999742 3 79999999999999998764 666666544 45778887
Q ss_pred HHh
Q 011686 390 WFA 392 (479)
Q Consensus 390 ~~~ 392 (479)
.++
T Consensus 141 ~ae 143 (144)
T cd08866 141 EAE 143 (144)
T ss_pred HHh
Confidence 765
No 46
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.69 E-value=6e-08 Score=85.07 Aligned_cols=94 Identities=19% Similarity=0.404 Sum_probs=57.3
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEe-cceehhhccCCCCC----------CccceeeeecCce---eEee----cCcce
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN----------QVPIKTLLIDGNC---RVED----RGLKT 68 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~-~~~~~~yk~~p~~~----------~~pi~~~~i~~~~---~v~d----~g~~~ 68 (479)
+|||||.-+.- +|..| ++|||||+ +.+|.|||. |.+. ..=++++-++... .+.. +-+..
T Consensus 1 k~G~l~K~~~~-~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 68999997655 99999 99999999 999999997 2111 1111222222111 1221 34556
Q ss_pred eeCeEEEEEEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 69 ~~~~~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+|.+++++ ...++.+-|-|-+-+|-..|++||+.|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 67777666 456899999999999999999999986
No 47
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.62 E-value=1.6e-07 Score=75.93 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=71.5
Q ss_pred eeeeEEEeeecce-eeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecccc
Q 011686 7 YEGWMVRYGRRKI-GRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (479)
Q Consensus 7 ~~gw~~~~~~~~~-g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~ 85 (479)
.+||+++.+.... +...-++|||+|.++.|.+|+.++.....+ ....+.... |....... +.-++|.|.+....
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~~~ 75 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP-GSIPLSEIS-VEEDPDGS---DDPNCFAIVTKDRG 75 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC-CEEEccceE-EEECCCCC---CCCceEEEECCCCC
Confidence 4799999887765 445559999999999999999887533211 233333333 55543322 23478888887645
Q ss_pred cceeeecccCHHHHHHHHHHHHHH
Q 011686 86 YHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 86 ~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
...+.|-|.|.+|+..|++||++|
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 789999999999999999999875
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.61 E-value=1.7e-07 Score=81.43 Aligned_cols=96 Identities=25% Similarity=0.370 Sum_probs=68.8
Q ss_pred eeeeEEEeeecce-ee-eeeeeeeEEEecce-------ehhhccCCCCCCccceeeeecCceeEeecCccee--eCeEEE
Q 011686 7 YEGWMVRYGRRKI-GR-SFIHMRYFVLESRL-------LAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH--HGHMVY 75 (479)
Q Consensus 7 ~~gw~~~~~~~~~-g~-~~~~~ry~vl~~~~-------~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~--~~~~~y 75 (479)
.||||.+-|.... ++ .| ++|||||.+.- |.|||..+. ..|...+-++. |.+.+.|.... +.+.=|
T Consensus 1 ~eGwL~K~~~~~~~~~~~W-krRwFvL~~~~l~~~~~~L~Yyk~~~~--~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~~ 76 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKW-VRRYFVLHCGDRERNLFALEYYKTSRK--FKLEFVIDLES-CSQVDPGLLCTAGNCIFGY 76 (108)
T ss_pred CceeeeeCCccccccccCc-EEEEEEEeccccCCCcceEEEECCCCC--CccceEEECCc-cEEEcccccccccCcccce
Confidence 3899999766432 43 55 99999999875 599996554 67766666666 44555543322 123336
Q ss_pred EEEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 76 v~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+|+|. ...+.+-|+|.|.+|...||.||.+.
T Consensus 77 ~f~i~---t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 77 GFDIE---TIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEE---eCCccEEEEECCHHHHHHHHHHHHhh
Confidence 77776 24678999999999999999999875
No 49
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.49 E-value=5.1e-07 Score=77.75 Aligned_cols=94 Identities=22% Similarity=0.369 Sum_probs=62.5
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEe-cceehhhccCCCCC---CccceeeeecCceeEe-ecCcceeeCeEEEEEEEe
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN---QVPIKTLLIDGNCRVE-DRGLKTHHGHMVYVLSVY 80 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~-~~~~~~yk~~p~~~---~~pi~~~~i~~~~~v~-d~g~~~~~~~~~yv~~~y 80 (479)
..||||.+-|. .=..| ++|||||. +..|.|||.+|.+. ..||....|.++.-+. |.++ -+.|.|-
T Consensus 2 ~k~G~L~K~g~--~~~~W-k~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~-------~~~F~i~ 71 (102)
T cd01241 2 VKEGWLHKRGE--YIKTW-RPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPR-------PNTFIIR 71 (102)
T ss_pred cEEEEEEeecC--CCCCC-eeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCC-------cceEEEE
Confidence 47999999764 22344 99999999 78899999999655 4677777666643221 2221 1455554
Q ss_pred ecc-cccceeeecccCHHHHHHHHHHHHHH
Q 011686 81 NKK-EKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 81 n~~-~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
... ...-.-++.|.|.||...||+||+.+
T Consensus 72 ~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 111 00011267799999999999999876
No 50
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.43 E-value=6e-07 Score=77.19 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=63.3
Q ss_pred cceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeecccCH
Q 011686 17 RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNI 96 (479)
Q Consensus 17 ~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~ 96 (479)
.+.+.+| ++|||||.++-|.|||... ..|+-++.+..-.-|++.|-..... -|+|.|-.+ ++.+-|-|.|.
T Consensus 15 ~~~~~n~-KkRwF~Lt~~~L~Y~k~~~---~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~s~ 85 (98)
T cd01244 15 WKKVLHF-KKRYFQLTTTHLSWAKDVQ---CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFEAP 85 (98)
T ss_pred CccCcCC-ceeEEEECCCEEEEECCCC---CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECCCH
Confidence 3667777 9999999999999999543 4555555555556666666544332 278888664 46899999999
Q ss_pred HHHHHHHHHHHHH
Q 011686 97 QEALIWKEKIELV 109 (479)
Q Consensus 97 ~ea~~w~~a~~~a 109 (479)
+|...||+||+.|
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 51
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.42 E-value=1.1e-05 Score=76.86 Aligned_cols=129 Identities=19% Similarity=0.167 Sum_probs=92.9
Q ss_pred cccHHHHHHHHhcCCC-CccchhhccceeEEEEEe----------cCceeEEEEEEecccCCCccCCceEEEEEEEEEcC
Q 011686 237 EASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEV----------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND 305 (479)
Q Consensus 237 ~a~pe~Vf~lL~dld~-~R~eWD~~~~~~evVe~i----------Dd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~e 305 (479)
.++-++....|.+--. +-.++.+.+...+.|+.. ++...|....++ +|+|+++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 5778888888866311 234688999999999998 344555444444 78999999999998876554
Q ss_pred ---------CCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCC--C-CCCCCeeEEEEEEeeecCCCccccc
Q 011686 306 ---------DGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLK--P-RNGRPRTQVQHLMQIDLKGWGVGYL 369 (479)
Q Consensus 306 ---------dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~--~-~~g~~~t~Vt~i~~vD~kGwips~v 369 (479)
...++|+...++|+.+|+.+|+|||.=.+=-. |+-++ . +.....-.=++.+..|++|++|.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~SVE~-ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYESVER-IRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEEEEE-EEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 23688999999999999999999998755333 44442 1 0111245666777889999999987
No 52
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.40 E-value=1e-05 Score=70.93 Aligned_cols=135 Identities=14% Similarity=0.208 Sum_probs=86.5
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCce-eEEEEEEecccCCCccCCceEEEEEEEEEcCCC
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT-AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 307 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~t-dIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edG 307 (479)
.+.....|+|||++||++|.|.+ ..++|.+.+.++++++.-++.. ..++..+. ..++.. +++. ++ ...+..
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~-~~-~~~~~~ 74 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYAL-EY-TWDGAG 74 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEE-EE-EEcCCC
Confidence 35667789999999999999986 5889999999999986544332 23333321 112222 3442 22 222222
Q ss_pred cEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHHHHHHHH
Q 011686 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAG 386 (479)
Q Consensus 308 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~l~~va~ 386 (479)
.|.++.+... +.....+.|.|+|.++ +|.|+|.++.+++|.+|+++ +.+.+.++ .+.+++
T Consensus 75 --~i~~~~~~~~---------~~~~~~~~~~~~~~~~-----~t~vt~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 135 (140)
T cd07819 75 --SVSWTLVEGE---------GNRSQEGSYTLTPKGD-----GTRVTFDLTVELTVPLPGFLKRKAEPLVL---DEALKG 135 (140)
T ss_pred --cEEEEEeccc---------ceeEEEEEEEEEECCC-----CEEEEEEEEEEecCCCCHHHHHHhhhHHH---HHHHHh
Confidence 2444554321 2333357899999962 59999999999999998775 55554443 345677
Q ss_pred HHHH
Q 011686 387 LREW 390 (479)
Q Consensus 387 LRe~ 390 (479)
||++
T Consensus 136 l~~~ 139 (140)
T cd07819 136 LKKR 139 (140)
T ss_pred Hhhh
Confidence 7765
No 53
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.38 E-value=1.7e-06 Score=74.85 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=65.6
Q ss_pred eeeeEEEeeec-ceeeeeeeeeeEEEecceehhhccCCCCCCccce-eeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 7 YEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK-TLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 7 ~~gw~~~~~~~-~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~-~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
.||||-.=|.. +.=.++ |+|||||.|+.|.|||+++. ..|++ ++.+..+.-|..-....-.-..-+.|.|..
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~--~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t--- 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSK--DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT--- 75 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCc--cCCCCceEEcccceEEeeccccccccccCcEEEEEc---
Confidence 57888774432 233567 89999999999999998876 34553 333344444443222111111136788854
Q ss_pred ccceeeecccCHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
.++..-|.|.|.+|+..||++|..|
T Consensus 76 p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 76 ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999987
No 54
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.36 E-value=8.7e-07 Score=76.23 Aligned_cols=88 Identities=13% Similarity=0.199 Sum_probs=65.7
Q ss_pred eeEEEeeecceeeeeeeeeeEEEec----ceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEE---EEEEEee
Q 011686 9 GWMVRYGRRKIGRSFIHMRYFVLES----RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMV---YVLSVYN 81 (479)
Q Consensus 9 gw~~~~~~~~~g~~~~~~ry~vl~~----~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~---yv~~~yn 81 (479)
||+..-|. +.--.+ +.|||+|.+ +.|.|||..+. ..|+ .++-..++.|. .+|...+ |.|.|++
T Consensus 3 G~l~K~g~-~~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~--~~p~-gli~l~~~~V~-----~v~ds~~~r~~cFel~~ 72 (98)
T cd01245 3 GNLLKRTK-SVTKLW-KTLYFALILDGSRSHESLLSSPKK--TKPI-GLIDLSDAYLY-----PVHDSLFGRPNCFQIVE 72 (98)
T ss_pred CccccCCC-Cccccc-ceeEEEEecCCCCceEEEEcCCCC--CCcc-ceeeccccEEE-----EccccccCCCeEEEEec
Confidence 78777554 224456 899999998 99999997776 6775 34444777776 6777666 9999999
Q ss_pred cccccceeeecccCHHHHHHHHHHHHH
Q 011686 82 KKEKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
+..| ....|+|.+ +|+.+||++|+.
T Consensus 73 ~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 73 RALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 9874 344566666 999999999974
No 55
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.32 E-value=1.4e-06 Score=69.75 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=68.3
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeec-CcceeeCeEEEEEEEeeccc
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~-g~~~~~~~~~yv~~~yn~~~ 84 (479)
++|||++....+ ..++ ++|||+|.+..|.+|+..+... ..|.....+.. +.|... +.+ +.-+.|.|-+..+
T Consensus 1 ~~G~l~~~~~~~-~~~w-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL-RKGW-KRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh-hCCc-cEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCC
Confidence 589999976554 2344 9999999999999999776542 55656666666 555432 111 2346777766554
Q ss_pred ccceeeecccCHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+.+.|.|.|.+|+.+|+.+|++|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 78999999999999999999865
No 56
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.31 E-value=2.1e-06 Score=73.45 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=61.9
Q ss_pred eeeeEEE--e----eecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecC-ceeEee-cCcceeeCeEEEEEE
Q 011686 7 YEGWMVR--Y----GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG-NCRVED-RGLKTHHGHMVYVLS 78 (479)
Q Consensus 7 ~~gw~~~--~----~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~-~~~v~d-~g~~~~~~~~~yv~~ 78 (479)
|||+|+| . |+..-.+.| ++|||||.|..|.+||.+....+.+.....|+- ++.|+- ..- -+.=+||+
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~----~k~~~~F~ 75 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY----TKKKHVFR 75 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc----ccCceEEE
Confidence 5788874 1 444445566 999999999999999965432222211112221 344431 111 11227888
Q ss_pred EeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 79 ~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
|-++ ..+.+.|.|.|.+|...|+.||+.|
T Consensus 76 l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 76 LRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 8765 4588899999999999999999753
No 57
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.23 E-value=7.7e-06 Score=70.33 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=66.3
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC--CccceeeeecCceeEeecCcceeeCeEEEEEEEeecc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~--~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~ 83 (479)
..|||+..+|... .-.+.|||+|-+..|-|+|.+|... .--+|.-+=-..+.|++.- +...-+-|.|..+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 4799998876543 2358899999888999999765322 2122332222336676531 2333455666443
Q ss_pred cccceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 84 EKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 84 ~~~~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
.+-+.+.|.|.+|=.+||.||+.||++
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 378999999999999999999999874
No 58
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.23 E-value=2.3e-06 Score=72.29 Aligned_cols=83 Identities=24% Similarity=0.548 Sum_probs=59.8
Q ss_pred eeEEEeeecceeeeeeeeeeEEE--ecceehhhccCCCCC---CccceeeeecCceeEeecCcceeeCeEEEEEEEeecc
Q 011686 9 GWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (479)
Q Consensus 9 gw~~~~~~~~~g~~~~~~ry~vl--~~~~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~ 83 (479)
|||..=++++ +.-| |+||||| +.-.|.||+.+.... .+||+.++|..+. ..+--.+-.|-.+|.|.
T Consensus 1 G~llKkrr~~-lqG~-~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~--~~~~I~idsg~~i~hLK----- 71 (89)
T PF15409_consen 1 GWLLKKRRKP-LQGW-HKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK--KSRRIDIDSGDEIWHLK----- 71 (89)
T ss_pred Ccceeecccc-CCCc-eeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC--CCCEEEEEcCCeEEEEE-----
Confidence 6777744443 4445 9999999 999999999554432 7899999887653 22222244555555554
Q ss_pred cccceeeecccCHHHHHHHHHHHHHH
Q 011686 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 84 ~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
|.|.+|...|+.||+.|
T Consensus 72 ---------a~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 72 ---------AKSQEDFQRWVSALQKA 88 (89)
T ss_pred ---------cCCHHHHHHHHHHHHhc
Confidence 88999999999999987
No 59
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.22 E-value=4.6e-06 Score=74.17 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=64.5
Q ss_pred eeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcce---------eeCeEEEEEEEeecccccceeeecccC
Q 011686 25 HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT---------HHGHMVYVLSVYNKKEKYHRITMAAFN 95 (479)
Q Consensus 25 ~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~---------~~~~~~yv~~~yn~~~~~~~~~~~~~~ 95 (479)
++|||||++.+|.||+.... ..|.=-.++|.+..|+..+.+. .++ .-|-|+|- +.+++++|.|.|
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~--~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~-~~~~~~i~---t~~R~~~l~a~s 107 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSS--AQILDVILFDVDFKVNGGGKEDISLAVELKDITG-LRHGLKIT---NSNRSLKLKCKS 107 (121)
T ss_pred cceeEEEeCCEEEEEcCCCC--CceeeEEEEcCCccEEeCCcccccccccccccCC-CceEEEEE---cCCcEEEEEeCC
Confidence 89999999999999984333 5787788899999999777651 233 34888884 458899999999
Q ss_pred HHHHHHHHHHHHHH
Q 011686 96 IQEALIWKEKIELV 109 (479)
Q Consensus 96 ~~ea~~w~~a~~~a 109 (479)
.+++..|+++|+.|
T Consensus 108 ~~~~~~Wi~~i~~a 121 (121)
T cd01254 108 SRKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999876
No 60
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.21 E-value=3.5e-05 Score=67.88 Aligned_cols=137 Identities=9% Similarity=-0.044 Sum_probs=83.7
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcE
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsy 309 (479)
++.+..|++||++||++|.|.+ ...+|.+.+...+++ +++...++..+. + ++...|.-...++....++..+
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKI---GPNEYEATVKLK---V-GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhcccc---CCCeEEEEEEEE---E-ccEEEEEEEEEEEEecCCCcEE
Confidence 5778889999999999999875 577999998886654 344444444433 2 3444454333333332333444
Q ss_pred EEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcccc----chhhhhHHHHHHHHHHH
Q 011686 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY----LSMFQQHCLFQMLNSVA 385 (479)
Q Consensus 310 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~----v~~~~~s~~~~~l~~va 385 (479)
.+....... .+.....+-|.|+|.+ + +|.|+|.++++++|.+..+ ++.+...++. ..++
T Consensus 75 ~~~~~~~~~---------~~~~~~~~~~~l~~~~---~--gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~---~~~~ 137 (144)
T cd05018 75 TITGEGKGG---------AGFVKGTARVTLEPDG---G--GTRLTYTADAQVGGKLAQLGSRLIDGAARKLIN---QFFE 137 (144)
T ss_pred EEEEEEcCC---------CceEEEEEEEEEEecC---C--cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHH---HHHH
Confidence 443322111 1222345689999983 2 5999999999999987333 3444444433 3455
Q ss_pred HHHHHH
Q 011686 386 GLREWF 391 (479)
Q Consensus 386 ~LRe~~ 391 (479)
+||+.+
T Consensus 138 ~l~~~~ 143 (144)
T cd05018 138 NLASKI 143 (144)
T ss_pred HHHHhh
Confidence 666543
No 61
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.20 E-value=5.9e-06 Score=71.86 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=65.7
Q ss_pred eeeeEEEeeecc------eeeeeeeeeeEEEe-cceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEE
Q 011686 7 YEGWMVRYGRRK------IGRSFIHMRYFVLE-SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (479)
Q Consensus 7 ~~gw~~~~~~~~------~g~~~~~~ry~vl~-~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~ 79 (479)
+.|||+.-+-.+ +.+-=-++|||||. +..|.|||.+|.+ ..|...+-+..+..|.+- -... |+ =+.|+|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~-~~p~G~IdL~~~~~V~~~-~~~~-~~-~~~f~I 76 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT-TLPQGTIDMNQCTDVVDA-EART-GQ-KFSICI 76 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC-cccceEEEccceEEEeec-cccc-CC-ccEEEE
Confidence 479999977664 33333489999997 6899988877521 567666556666666632 2211 11 245666
Q ss_pred eecccccceeeecccCHHHHHHHHHHHHH
Q 011686 80 YNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 80 yn~~~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
- ..++..-|.|-|.+|...|+++|..
T Consensus 77 ~---tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 77 L---TPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred E---CCCceEEEEeCCHHHHHHHHHHHHh
Confidence 3 4468899999999999999999863
No 62
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.15 E-value=1.4e-05 Score=68.87 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=69.6
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
.-|||+..+++.. .++|||+|=...|=|+++.+... .-=++..+=-.++.|++.-= ..++-+-|.||++
T Consensus 3 ikEG~L~K~~~k~-----~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 3 IRQGCLLKLSKKG-----LQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeEEEEEEEeCCC-----CceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 3699999887643 57899999888888888877543 11124444446667775211 1245678999955
Q ss_pred ccceeeecccCHHHHHHHHHHHHHHHh
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELVID 111 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a~~ 111 (479)
.+-+.+.|.|.+|-..||++|++||+
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999985
No 63
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.08 E-value=1.2e-05 Score=71.88 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=72.5
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCcee--EeecCcceeeCeEEEEEEEee
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYVLSVYN 81 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~--v~d~g~~~~~~~~~yv~~~yn 81 (479)
++|.|+|..+..-+ |..--|+|||||+|.+|.|||...... ..|+-+..+..++. |++--|+.-...-=|.+++..
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~ 79 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWR 79 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEec
Confidence 46889998766444 445559999999999999988444323 68888888888766 333334444444446666664
Q ss_pred ccc---------------ccceeeecccCHHHHHHHHHHHHHH
Q 011686 82 KKE---------------KYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 82 ~~~---------------~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
... ...+.-|+|-+.||-..|++||.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 80 PKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 431 1223578899999999999999875
No 64
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.04 E-value=2e-05 Score=67.55 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=69.9
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecccc-
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK- 85 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~- 85 (479)
--|||=..+. +|.+-=++.|+|||...+|+|||.+-. ..| |-++=-.|++|.|.----.+++ +.|.+||+...
T Consensus 3 rkgwl~~~n~-~~m~ggsK~~WFVLt~~~L~wykd~ee--KE~-kyilpLdnLk~Rdve~gf~sk~--~~FeLfnpd~rn 76 (110)
T cd01256 3 RKGWLSISNV-GIMKGGSKDYWFVLTSESLSWYKDDEE--KEK-KYMLPLDGLKLRDIEGGFMSRN--HKFALFYPDGRN 76 (110)
T ss_pred eeeeEEeecc-ceecCCCcceEEEEecceeeeeccccc--ccc-cceeeccccEEEeecccccCCC--cEEEEEcCcccc
Confidence 3589866433 343445789999999999999996643 333 4444446666665432224444 89999987543
Q ss_pred ----cceeeecccCHHHHHHHHHHHHHH
Q 011686 86 ----YHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 86 ----~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
.++++++|.|.||...||-+|=.|
T Consensus 77 vykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 77 VYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccchheeeecCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999877
No 65
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.01 E-value=0.00023 Score=62.23 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=82.4
Q ss_pred ecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEEEEe
Q 011686 236 VEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRS 315 (479)
Q Consensus 236 V~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~S 315 (479)
|+||+++|+++|.|.+ ..++|.+.+.++++|+.-+++..+ ..... .....+.|+........ .. |.+..
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~--~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDPP--ER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEECT--TT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEEe--ee--eeeee
Confidence 6899999999999986 588999999999999998774444 33322 23345667554433322 22 33333
Q ss_pred ccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccc-hhhhhHHHHHH
Q 011686 316 REHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQM 380 (479)
Q Consensus 316 V~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v-~~~~~s~~~~~ 380 (479)
+. |- .....|.|.++|.++..|+.+|.|++.+..++++.++..+ ..+....+..+
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQM 125 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHH
Confidence 32 11 2344789999999851123479999999999999998754 55555554444
No 66
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.00 E-value=2.4e-05 Score=68.15 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=66.0
Q ss_pred cceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecccc-cceeeecccC
Q 011686 17 RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK-YHRITMAAFN 95 (479)
Q Consensus 17 ~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~-~~~~~~~~~~ 95 (479)
.++..-=.+.|||+|+++.|.|||.++..+..|+=.+.--+|....|.- +-.+ -|.+++-.+.+. .+.+.|.|.|
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~---~~~~-kf~I~l~~ps~~~~r~y~l~cds 88 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVN---VAQQ-KFHIKLLIPTAEGMNEVWLRCDN 88 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEccccc---cccc-ceEEEEecCCccCCeEEEEECCC
Confidence 3444433589999999999999999987777776555555555555430 1111 299999887633 4679999999
Q ss_pred HHHHHHHHHHHHHH
Q 011686 96 IQEALIWKEKIELV 109 (479)
Q Consensus 96 ~~ea~~w~~a~~~a 109 (479)
-++=++||.|++.|
T Consensus 89 Eeqya~Wmaa~rla 102 (106)
T cd01237 89 EKQYAKWMAACRLA 102 (106)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999999
No 67
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.97 E-value=0.00018 Score=63.81 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=78.6
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEE--EEEEcCCCcE
Q 011686 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVR--YWRRNDDGSY 309 (479)
Q Consensus 232 avgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr--~~r~~edGsy 309 (479)
...+|+||+++||++|.|.+ ..++|.+. ..+++++. ++....++. |.+..+++.+.. .......+..
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRM--------WATAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEE--------EEEcCCCcEEEEEEEEEEcCCCCE
Confidence 35689999999999999986 47789998 78887776 344333332 112223332211 1112222332
Q ss_pred EEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHH-HHHHHHHHH
Q 011686 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQ-MLNSVAGLR 388 (479)
Q Consensus 310 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~-~l~~va~LR 388 (479)
|.+..+.-+ + +.....|-|.++|.++ + +|.|+|.+..++++.+| .........+.+ +-..+++|+
T Consensus 72 -i~~~~~~~~------~--~~~~~~g~w~~~~~~~--~--~t~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk 137 (142)
T cd08861 72 -IVFRQEEPP------P--PVASMSGEWRFEPLGG--G--GTRVTLRHDFTLGIDSP-EAVPWIRRALDRNSRAELAALR 137 (142)
T ss_pred -EEEEEeeCC------C--ChhhheeEEEEEECCC--C--cEEEEEEEEEEECCCCc-hhHHHHHHHHccccHHHHHHHH
Confidence 444444211 1 1223356899999973 3 69999999999999876 222222222111 233467777
Q ss_pred HHHh
Q 011686 389 EWFA 392 (479)
Q Consensus 389 e~~~ 392 (479)
++++
T Consensus 138 ~~~E 141 (142)
T cd08861 138 AAAE 141 (142)
T ss_pred HHhh
Confidence 7654
No 68
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=5.9e-05 Score=75.33 Aligned_cols=98 Identities=19% Similarity=0.414 Sum_probs=71.1
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
+.-|||+..+|.|+. .+| .+|+|||..++|.||.---. ..| |.+|--.|+-|. +.-.-+.=+.|.+||+.+
T Consensus 260 pdREGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTD--KEP-rGIIpLeNlsir----~VedP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTD--KEP-RGIIPLENLSIR----EVEDPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeeecCCcc-cch-hheeEEeecceeeeeeeccC--CCC-Ccceecccccee----eccCCCCCCeEEEecCCC
Confidence 457999999999853 456 89999999999999853222 344 444444444332 222334567899999988
Q ss_pred cccee-------------------eecccCHHHHHHHHHHHHHHHh
Q 011686 85 KYHRI-------------------TMAAFNIQEALIWKEKIELVID 111 (479)
Q Consensus 85 ~~~~~-------------------~~~~~~~~ea~~w~~a~~~a~~ 111 (479)
+..+| +|.|.|+||-..||++|+.+|.
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 65554 5789999999999999999975
No 69
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.68 E-value=0.0025 Score=55.75 Aligned_cols=135 Identities=10% Similarity=0.085 Sum_probs=81.4
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcE
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsy 309 (479)
+.....|+||+++||+++.|.. ..++|.+.+..++++.. .... +.+. .|+ ...++|.... ....+ +..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~~---~~~~---~~~-g~~~~~~~~v-~~~~~-~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRSH---WKAK---GPA-GLSVEWDAEI-TEQVP-NER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--CceE---EEEe---cCC-CCcEEEEEEE-eccCC-CCE
Confidence 3567789999999999999975 58899999998877642 1122 2223 333 4556665432 22223 333
Q ss_pred EEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcccc-chhhhhHHHHHH-HHHHHHH
Q 011686 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-LSMFQQHCLFQM-LNSVAGL 387 (479)
Q Consensus 310 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~-v~~~~~s~~~~~-l~~va~L 387 (479)
|.+.....+ + ...+-|.++|.++ + +|.|++.++.++.+.++.. +..++...+.++ -..++.|
T Consensus 70 -i~~~~~~~~-------~----~~~~~~~f~~~~~--~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 70 -IAWRSVEGA-------D----PNAGSVRFRPAPG--R--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred -EEEEECCCC-------C----CcceEEEEEECCC--C--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 444443321 1 1246788999863 3 6999999999999877542 233333333332 3445666
Q ss_pred HHHHh
Q 011686 388 REWFA 392 (479)
Q Consensus 388 Re~~~ 392 (479)
+++++
T Consensus 134 k~~aE 138 (139)
T cd07817 134 KQLVE 138 (139)
T ss_pred HHHhh
Confidence 66554
No 70
>PRK10724 hypothetical protein; Provisional
Probab=97.68 E-value=0.002 Score=59.92 Aligned_cols=129 Identities=10% Similarity=0.150 Sum_probs=85.6
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCC
Q 011686 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD 306 (479)
Q Consensus 227 ~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~ed 306 (479)
...++...+|++|++++|+++.|++ ..++|-+.|.+++++++-++.. +...++. +. ++ ..-|.....+ ..+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v~---~~-g~-~~~f~srv~~--~~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDVS---KA-GI-SKTFTTRNQL--TSN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEEe---eC-Cc-cEEEEEEEEe--cCC
Confidence 4578888999999999999999986 5889999999999999866543 2222221 11 11 3345544433 223
Q ss_pred CcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccc-cchhhhhHHHHHH
Q 011686 307 GSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG-YLSMFQQHCLFQM 380 (479)
Q Consensus 307 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips-~v~~~~~s~~~~~ 380 (479)
+ .|....++.| - ....|.|.++|+++ + +|.|++.+...++-.+.. +++.+...+..+|
T Consensus 85 ~--~I~~~~~~Gp----F------~~l~g~W~f~p~~~--~--~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~m 143 (158)
T PRK10724 85 Q--SILMQLVDGP----F------KKLIGGWKFTPLSQ--E--ACRIEFHLDFEFTNKLIELAFGRVFKELASNM 143 (158)
T ss_pred C--EEEEEecCCC----h------hhccceEEEEECCC--C--CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHH
Confidence 3 2444555422 1 23578999999973 3 699999999998877754 3455555544444
No 71
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.62 E-value=0.0035 Score=57.32 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=81.4
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEE
Q 011686 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (479)
Q Consensus 231 KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyv 310 (479)
.-..+|++||++||+++.|+. ..++|.+.+..+++++. +++...+-..+.... + .. ...+.. .+..+.....
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~~-~-g~-~~~w~s---~~~~~~~~~~ 75 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTMHPDA-N-GT-VWSWVS---ERTLDPVNRT 75 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEEEecc-C-CE-EEEEEE---EEEecCCCcE
Confidence 345689999999999999986 58899999999999986 344333222222111 1 00 112221 1122333444
Q ss_pred EEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcc---ccchhhhhHHHHHHHHHHHHH
Q 011686 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV---GYLSMFQQHCLFQMLNSVAGL 387 (479)
Q Consensus 311 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwip---s~v~~~~~s~~~~~l~~va~L 387 (479)
|.++.+ +. +|-. ...+.|.++|+++ .|.|++......++-.| .|+....... +-..+++|
T Consensus 76 i~~~~~--~~-~p~~------~m~~~W~f~~~~~-----gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L 138 (146)
T cd08860 76 VRARRV--ET-GPFA------YMNIRWEYTEVPE-----GTRMRWVQDFEMKPGAPVDDAAMTDRLNTN---TRAQMARI 138 (146)
T ss_pred EEEEEe--cC-CCcc------eeeeeEEEEECCC-----CEEEEEEEEEEECCCCccchHHHHHHHhcc---cHHHHHHH
Confidence 555422 22 2221 3467899999952 49999999888774333 2344333332 23457778
Q ss_pred HHHHhh
Q 011686 388 REWFAQ 393 (479)
Q Consensus 388 Re~~~~ 393 (479)
|+.+++
T Consensus 139 k~~aE~ 144 (146)
T cd08860 139 KKKIEA 144 (146)
T ss_pred HHHhhh
Confidence 877765
No 72
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.53 E-value=0.0038 Score=54.17 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=80.5
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCc
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGs 308 (479)
.++....|++|+++||++|.|.+ ..++|.+.+...++++.-++--.+....+. .. +.+. .... ..+...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~i~-~~~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ERLL-ALDDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EEeh-hcCccC
Confidence 36778899999999999999975 577999988888876543201112111211 11 2221 1111 112221
Q ss_pred EEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcccc-chhhhhHHHHHHHHHHHHH
Q 011686 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVAGL 387 (479)
Q Consensus 309 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~-v~~~~~s~~~~~l~~va~L 387 (479)
..|.+..+.- ..| .....+-|.++|+++ | +|.|++.+..+++|.++.. +..++... +-..+++|
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~--~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L 135 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGD--G--GTRVTWTAEFDPPEGLTDELARAFLTGV---YRAGLAAL 135 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCC--C--ccEEEEEEEEecCCCcchHHHHHHHHHH---HHHHHHHH
Confidence 2344444431 011 122357899999873 3 6999999999999875433 34444443 34557778
Q ss_pred HHHH
Q 011686 388 REWF 391 (479)
Q Consensus 388 Re~~ 391 (479)
++++
T Consensus 136 ~~~~ 139 (140)
T cd07821 136 KAAL 139 (140)
T ss_pred HHhh
Confidence 7765
No 73
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.51 E-value=0.00051 Score=61.04 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=69.4
Q ss_pred eeeEEEe-------eecceeeeeeeeeeEEEecceehhhccCCCC--C---CccceeeeecCce-eEeecCcceeeCeEE
Q 011686 8 EGWMVRY-------GRRKIGRSFIHMRYFVLESRLLAYYKKKPQD--N---QVPIKTLLIDGNC-RVEDRGLKTHHGHMV 74 (479)
Q Consensus 8 ~gw~~~~-------~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~--~---~~pi~~~~i~~~~-~v~d~g~~~~~~~~~ 74 (479)
||+|+|= .+.++|..+=++||.||+|..|..||.+-.. . +.+-....|.+++ .|. ....+.=
T Consensus 3 ~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr~ 77 (117)
T cd01230 3 HGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKKP 77 (117)
T ss_pred CcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCCC
Confidence 6777762 1234555455999999999999999987321 1 1122344466655 666 6677778
Q ss_pred EEEEEeecccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 75 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 75 yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
+||+|-.+. .+.+.|-|.+.+|+..|+.+|..|+
T Consensus 78 ~VF~L~~~~--g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 78 HVFRLRTAD--WREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred cEEEEEcCC--CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 899998754 4678888999999999999999984
No 74
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.37 E-value=0.029 Score=48.60 Aligned_cols=136 Identities=11% Similarity=0.155 Sum_probs=75.9
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCc
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGs 308 (479)
.+..+..|+|||++||++|.|.. ..+.|.+.+..++++. .+...+ ...+... +. .-+..+.....+++.
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~--~~~~~~-~~~~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLS--GGGPGT-ERTVRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEE--ECSTEE-EEEEEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEcc--ccccce-eEEEEec---cc----cceeEEEEEecCCCc
Confidence 35667789999999999999975 5778999988888766 233332 2233311 11 223333333333243
Q ss_pred EEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHH-HHHHHHHH
Q 011686 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQ-MLNSVAGL 387 (479)
Q Consensus 309 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~-~l~~va~L 387 (479)
. +.++.+ ..++..+ .+.|.++|.+ + +|.|++.+..++ |+...+...++...+.. +-..+++|
T Consensus 72 ~-~~~~~~-------~~~~~~~---~~~~~~~~~~--~---gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (139)
T PF10604_consen 72 R-ITWRFV-------PSGFTNG---TGRWRFEPVG--D---GTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENL 134 (139)
T ss_dssp E-EEEEEE-------SSSSCEE---EEEEEEEEET--T---TEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEE-------ecceeEE---EEEEEEEEcC--C---CEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3 333333 1222222 4579999987 2 399999999997 33322222222222222 23456777
Q ss_pred HHHHh
Q 011686 388 REWFA 392 (479)
Q Consensus 388 Re~~~ 392 (479)
++.++
T Consensus 135 ~~~~E 139 (139)
T PF10604_consen 135 KRAAE 139 (139)
T ss_dssp HHHHH
T ss_pred hcccC
Confidence 76653
No 75
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.19 E-value=0.0026 Score=56.74 Aligned_cols=99 Identities=18% Similarity=0.331 Sum_probs=70.3
Q ss_pred eeeEEEeeecc--eeeeeeeeeeEEEec--ceehhhccCCCCC---CccceeeeecCceeEeecCcceeeCe----EEEE
Q 011686 8 EGWMVRYGRRK--IGRSFIHMRYFVLES--RLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGH----MVYV 76 (479)
Q Consensus 8 ~gw~~~~~~~~--~g~~~~~~ry~vl~~--~~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~----~~yv 76 (479)
-.|||.++++. .+..=.|.|||-|.. +.|.-...+|... ..=.|++.|+.=..|.|.-.-. -|. --|+
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~-~~~~~~~~~~s 90 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSP-PGLKKPDHNKS 90 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCC-ccccccccceE
Confidence 45999998877 233467999999999 5555566667433 3445788888888887662211 111 2355
Q ss_pred EEEeecccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 77 ~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
|.|. ...+.++|.|.+.+++..|+.+|+..+
T Consensus 91 i~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 91 IIIV---TPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5554 335799999999999999999999874
No 76
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.92 E-value=0.038 Score=49.65 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=74.3
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEE-EEEEEc-CCCc
Q 011686 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYV-RYWRRN-DDGS 308 (479)
Q Consensus 231 KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~l-r~~r~~-edGs 308 (479)
.....|++||+.|+++|.|.. ....|.+.+ +.++.++++....-..++ . .+++ ..|-.. +..... +...
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~---~~~~~~~~~~~~~~~~~~--~--g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGA---SLTEVEGDDEYKGTVKVK--L--GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCc---eeccccCCCeEEEEEEEE--E--ccEE-EEEEEEEEEEeccCCCcE
Confidence 346689999999999998864 345666554 444445555433222222 1 1221 123111 111111 1222
Q ss_pred EEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHHHH-HHHHHH
Q 011686 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQML-NSVAGL 387 (479)
Q Consensus 309 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~~l-~~va~L 387 (479)
+.+...... ....|.+++.+ -|.+.|.+ + .|.|+|.+.+++.|.++.+....+.....+++ ..+++|
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~~~---~--gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l 140 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSPAG---G--GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANL 140 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEecC---C--cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHH
Confidence 222211110 01112333333 57888832 2 69999999999999997776555554444443 445667
Q ss_pred HHHHh
Q 011686 388 REWFA 392 (479)
Q Consensus 388 Re~~~ 392 (479)
++.++
T Consensus 141 ~~~~e 145 (146)
T cd07823 141 EARLA 145 (146)
T ss_pred HHHhc
Confidence 66654
No 77
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.80 E-value=0.067 Score=48.06 Aligned_cols=135 Identities=12% Similarity=0.105 Sum_probs=74.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEE-ecCceeEEEE-EEecccCCCccCCceEEEE-EEEEEcCC
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE-VDGHTAILYH-RLQLDWFPMFVWPRDLCYV-RYWRRNDD 306 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~-iDd~tdIVY~-~~~~~~~p~~vs~RDFV~l-r~~r~~ed 306 (479)
|--...|+|||++||+++.|.. ..++|.+.+.++++++. -+...-..++ ... . ..+..+... +.......
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~-~-----~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWR-G-----LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEE-e-----cCCcEEEEEEEEEeecCC
Confidence 4456789999999999999975 57899999999888763 2222111122 111 1 112223211 11121222
Q ss_pred CcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCC----CccccchhhhhHHHHHH-H
Q 011686 307 GSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKG----WGVGYLSMFQQHCLFQM-L 381 (479)
Q Consensus 307 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kG----wips~v~~~~~s~~~~~-l 381 (479)
..+ .+.. ..+ .++ .+.|.|+|.+ + +|.|++-..++.+| .+..+...+......++ -
T Consensus 76 ~~~--~~~~-~g~--------~~~---~~~~~~~~~~---~--gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 136 (146)
T cd07824 76 SLL--EVRA-SGD--------LEG---VGRWTLAPDG---S--GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMR 136 (146)
T ss_pred cEE--EEEE-EEe--------eeE---EEEEEEEEcC---C--CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHH
Confidence 222 2222 111 122 3679999964 2 59999999999887 33333333333333333 3
Q ss_pred HHHHHHHHH
Q 011686 382 NSVAGLREW 390 (479)
Q Consensus 382 ~~va~LRe~ 390 (479)
..+++|++.
T Consensus 137 ~~~~~L~~~ 145 (146)
T cd07824 137 AGEKGLARR 145 (146)
T ss_pred hHHHHHHhh
Confidence 445666654
No 78
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.68 E-value=0.079 Score=45.72 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecC--ceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcE
Q 011686 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG--HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (479)
Q Consensus 232 avgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd--~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsy 309 (479)
....|+||+++||++|.|.. ..++|.+.+..++.+..-.. .+.+ ..... ++ +...+ + ..+.... +.+.+
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~~~-~~~~~---~~-g~~~~-~-~~~v~~~-~p~~~ 73 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGTRY-HQVRK---FL-GRRIE-L-TYEITEY-EPGRR 73 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCccEE-EEEEE---ec-CceEE-E-EEEEEEe-cCCcE
Confidence 45679999999999999975 57799998877766543111 1222 11221 11 11111 1 1111111 22333
Q ss_pred EEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHH-HHHHHHHHH
Q 011686 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQ-MLNSVAGLR 388 (479)
Q Consensus 310 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~-~l~~va~LR 388 (479)
+...... +.++ ..+-|.+.|.++ +|.|++....+++++.. ++..++...+.. +-..+++|+
T Consensus 74 -~~~~~~~--------~~~~---~~~~~~~~~~~~-----~t~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 74 -VVFRGSS--------GPFP---YEDTYTFEPVGG-----GTRVRYTAELEPGGFAR-LLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred -EEEEecC--------CCcc---eEEEEEEEEcCC-----ceEEEEEEEEccchhHH-HHHHHHHHHHhhhhHHHHHHHH
Confidence 3333321 1122 246799999852 59999999999977643 222223333222 234566666
Q ss_pred HHHh
Q 011686 389 EWFA 392 (479)
Q Consensus 389 e~~~ 392 (479)
+.++
T Consensus 136 ~~~e 139 (140)
T cd08865 136 ALLE 139 (140)
T ss_pred HHhh
Confidence 6654
No 79
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=96.57 E-value=0.01 Score=52.53 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=56.9
Q ss_pred eeeeEEE------eeecc--eeeeeeeeeeEEEecceehhhccCC--C----------CCCccceeeeecCceeEeecCc
Q 011686 7 YEGWMVR------YGRRK--IGRSFIHMRYFVLESRLLAYYKKKP--Q----------DNQVPIKTLLIDGNCRVEDRGL 66 (479)
Q Consensus 7 ~~gw~~~------~~~~~--~g~~~~~~ry~vl~~~~~~~yk~~p--~----------~~~~pi~~~~i~~~~~v~d~g~ 66 (479)
.|||++| -|++. -.|+| ++=|.||.|..|.+||... . .+..|+.+..|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 4899988 34443 56677 8889999999999999732 1 1234555566655544444443
Q ss_pred ceeeCeEEEEEEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 67 KTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 67 ~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
.. .+ +||+|= .....+.-|-|.|.+|...||.+|..+
T Consensus 81 ~K--r~--~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 81 TK--RK--NVFRLR--TADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp TT--CS--SEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred cc--CC--eEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 33 33 345552 334778999999999999999999877
No 80
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.40 E-value=0.00066 Score=73.76 Aligned_cols=76 Identities=29% Similarity=0.323 Sum_probs=67.3
Q ss_pred ccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcccc
Q 011686 289 FVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY 368 (479)
Q Consensus 289 ~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~ 368 (479)
|...|||+.+| |..+++..||+|...++..| |||.+..+.|.|+|.+. | +++|+|+..+|++|..+.|
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~--g--~sr~~~i~r~dlkg~~~~w 642 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG--G--QSRVTHICRVDLKGRSPEW 642 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC--c--chhhhhhhhhhcccCCchh
Confidence 46679999998 78899999999977777777 99999999999999984 3 6899999999999999999
Q ss_pred chhhhhHH
Q 011686 369 LSMFQQHC 376 (479)
Q Consensus 369 v~~~~~s~ 376 (479)
+++...++
T Consensus 643 y~k~fg~~ 650 (674)
T KOG2200|consen 643 YNKSFGHL 650 (674)
T ss_pred hhccccch
Confidence 98887764
No 81
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.38 E-value=0.25 Score=41.14 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEE
Q 011686 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (479)
Q Consensus 231 KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyv 310 (479)
+....|+||+++||++|.|.. ..++|.+.+..++++..........+ .+. .. +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGVGARF-VGG---RK-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccceeEE-EEE---ec-CCccccceE-EEEEecCCCceE
Confidence 467789999999999999975 57899999998887764222221111 111 00 011111111 111111111111
Q ss_pred EEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcc
Q 011686 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 366 (479)
Q Consensus 311 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwip 366 (479)
....+-.+. ....+.|.++|.++ + +|.|++....++.++..
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~--~--~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGD--G--GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCC--C--cEEEEEEEEEecCCcch
Confidence 111211111 23466899999973 2 69999999999999874
No 82
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.20 E-value=0.066 Score=47.10 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=74.4
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeec--Cccee-eCeEEEEEEEee
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR--GLKTH-HGHMVYVLSVYN 81 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~--g~~~~-~~~~~yv~~~yn 81 (479)
.|+|=+.++..++. ..+.|+|+|=.++|=|=|++-... ..=.|.-+.-..|.|.|. |++.. +..+=+-|.|||
T Consensus 3 i~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 3 FLQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred eEeeeEEEEecccC---CcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEE
Confidence 36676776653321 345899999999999999764322 666788888888999987 66553 234567899999
Q ss_pred cccccceeeecccCHHHHHHHHHHHHH
Q 011686 82 KKEKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
.. .++-+.+-|.|+||-.+||+||..
T Consensus 80 ~~-~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 ES-TDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred cC-CCeEEEEEECCHHHHHHHHHHHHH
Confidence 84 367799999999999999999975
No 83
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.02 E-value=0.02 Score=50.70 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=55.0
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeec------------CcceeeCeEE
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR------------GLKTHHGHMV 74 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~------------g~~~~~~~~~ 74 (479)
.||||+|+-..-- --+.+|++|.+|.+.||+.+-. ..|.|-+....=+.|+.. =-|+.-+.++
T Consensus 2 kEGWmVHyT~~d~---~rKRhYWrLDsK~Itlf~~e~~--skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~v 76 (117)
T cd01239 2 KEGWMVHYTSSDN---RRKKHYWRLDSKAITLYQEESG--SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNV 76 (117)
T ss_pred ccceEEEEecCcc---ceeeeEEEecCCeEEEEEcCCC--CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEE
Confidence 5999999765432 2257899999999999997654 344444444444444421 1233334443
Q ss_pred EEEE---Eeecc-ccccee--eecccCHHHHHHHHHHHHHH
Q 011686 75 YVLS---VYNKK-EKYHRI--TMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 75 yv~~---~yn~~-~~~~~~--~~~~~~~~ea~~w~~a~~~a 109 (479)
|-.- .|+.. +...+. -......+-|..|-.||+||
T Consensus 77 Y~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 77 YFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 3221 11111 100011 12344567789999999886
No 84
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=95.91 E-value=0.51 Score=42.52 Aligned_cols=126 Identities=14% Similarity=0.046 Sum_probs=75.3
Q ss_pred EEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcEEEE
Q 011686 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVL 312 (479)
Q Consensus 233 vgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~ 312 (479)
...|++|+++|+++|+|. ..|-.++..++.++.++++... - ++-+. ++++.+=-..++.....+...+.+.
T Consensus 2 s~~v~a~~~~vw~~l~D~----~~l~~ciPG~~~~e~~~~~~~~-~--~~v~v--G~i~~~~~g~~~~~~~~~~~~~~~~ 72 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP----ENLARCIPGVESIEKVGDEYKG-K--VKVKV--GPIKGTFDGEVRITEIDPPESYTLE 72 (140)
T ss_dssp EEEECS-HHHHHHHHT-H----HHHHHHSTTEEEEEEECTEEEE-E--EEEES--CCCEEEEEEEEEEEEEETTTEEEEE
T ss_pred cEEecCCHHHHHHHhcCH----HHHHhhCCCcEEeeecCcEEEE-E--EEEEe--ccEEEEEEEEEEEEEcCCCcceEee
Confidence 457899999999999873 4799999999999999833332 2 33233 3455544444555555555555444
Q ss_pred EEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHHH
Q 011686 313 FRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQM 380 (479)
Q Consensus 313 ~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~~ 380 (479)
...-.. .+-+.+.. --.+...+ .+ .|.|+|-..+++.|.+.++-...+.....++
T Consensus 73 ~~g~g~------~~~~~~~~---~~~~~~~~--~~--~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l 127 (140)
T PF06240_consen 73 FEGRGR------GGGSSASA---NITLSLED--DG--GTRVTWSADVEVGGPLASLGQRLIESVARRL 127 (140)
T ss_dssp EEEEEC------TCCEEEEE---EEEEEECC--CT--CEEEEEEEEEEEECHHHHC-HHHHHHHHHHH
T ss_pred eeccCC------ccceEEEE---EEEEEcCC--CC--CcEEEEEEEEEEccCHHHhhHHHHHHHHHHH
Confidence 433321 12233332 22233333 22 3999999999999999766555555444444
No 85
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.71 E-value=0.72 Score=39.98 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=33.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEe
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEV 270 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~i 270 (479)
+.....|+||+++||+++.|.. ..++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 4567789999999999999975 578999998888876543
No 86
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.57 E-value=0.72 Score=41.02 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=72.4
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEE-ec-----CceeEEEEEEecccCCCccCCceEEEEEEEE
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE-VD-----GHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~-iD-----d~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r 302 (479)
.+....+|++|+++||+++.|.. ..++|++.+...+.++. .. ....+.+ ... .. ..+-...+. .
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~---~~~---~~-~~~~~~~v~--~ 72 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW---EGN---DK-VGEGEMEIT--E 72 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcceEEEecCCCCCCCeEEEE---ecC---Cc-ccceEEEEE--e
Confidence 35667889999999999999975 58899998876655443 11 1122211 110 00 111111111 1
Q ss_pred EcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcc-cc----chhhhhHHH
Q 011686 303 RNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV-GY----LSMFQQHCL 377 (479)
Q Consensus 303 ~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwip-s~----v~~~~~s~~ 377 (479)
...+.. |.++... .-|.. ....+-|.++|.+ + +|.|++.+..++.+..+ .+ +.......
T Consensus 73 ~~p~~~--i~~~~~~--~~~~~------~~~~~~~~~~~~~---~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 136 (150)
T cd07818 73 SVPNER--IEYELRF--IKPFE------ATNDVEFTLEPVG---G--GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKD- 136 (150)
T ss_pred cCCCcE--EEEEEEe--cCCcc------ccceEEEEEEEcC---C--ceEEEEEEEecCCchHHHHHHHhhHHHHHHHH-
Confidence 112221 2223221 01110 1224689999994 2 59999999999876442 22 23333333
Q ss_pred HHHHHHHHHHHHHHh
Q 011686 378 FQMLNSVAGLREWFA 392 (479)
Q Consensus 378 ~~~l~~va~LRe~~~ 392 (479)
+-..+++|+++++
T Consensus 137 --~~~~l~~lk~~~E 149 (150)
T cd07818 137 --FEKGLANLKAVLE 149 (150)
T ss_pred --HHHHHHHHHHHhh
Confidence 2344667777665
No 87
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.55 E-value=1 Score=38.87 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEE
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSL 266 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~ev 266 (479)
+....+|+||+++||++|.|.. ..+.|.+.+...+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~ 37 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATG 37 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEec
Confidence 4567789999999999999975 57899977665544
No 88
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=94.73 E-value=0.0017 Score=64.63 Aligned_cols=157 Identities=11% Similarity=-0.031 Sum_probs=107.2
Q ss_pred cEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEE
Q 011686 201 WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHR 280 (479)
Q Consensus 201 Wkl~~~~nGV~Vy~r~~~~~~~~~~~~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~ 280 (479)
|.+.+...-+.++.+.... ..+.+.++..+..-........+.-+ ..+..|+..-.-...++.+..++++ |..
T Consensus 27 ~s~~k~~~~v~~~~~a~~~-----~~~~i~~v~~~~~lf~~~~~~~i~~~-~~i~~~~~g~~v~~~~~~~~~~~~~-~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK-----PKGNISRVRRFFCLFVTEDLVFISLL-WLIELLQNGPEVYNMLEKIQKNTDI-WTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC-----cCCcccccceeeccccccchheeecc-hhhHHHhccchHHHHHHHHHhheee-eeE
Confidence 5555555556666665541 12345555555544333322222212 2233444443555667778888888 777
Q ss_pred EecccCCCccCCceEEEEEEEEEcCCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeee
Q 011686 281 LQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQID 360 (479)
Q Consensus 281 ~~~~~~p~~vs~RDFV~lr~~r~~edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD 360 (479)
..+.+.-..+++|+|+...+..+.+.+......++++++.+++...++|+..++.|++..|++..+. .+.-.-..+.|
T Consensus 100 ~~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~--~~~~~~~~~~d 177 (241)
T KOG3845|consen 100 EFDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPF--ILAWLREWFLD 177 (241)
T ss_pred ecHhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcch--hHHHHHHHHhh
Confidence 6665555688999999999999888777777788999999999999999999999999999987532 34444456789
Q ss_pred cCCCcc
Q 011686 361 LKGWGV 366 (479)
Q Consensus 361 ~kGwip 366 (479)
.+|..+
T Consensus 178 ~rg~~~ 183 (241)
T KOG3845|consen 178 LRGLPQ 183 (241)
T ss_pred cccCCC
Confidence 999884
No 89
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.54 E-value=0.058 Score=47.05 Aligned_cols=96 Identities=19% Similarity=0.380 Sum_probs=62.1
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecce-----ehhhccCCCCCCccceeeeecCcee-----Eee---cCcceeeCeE
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRL-----LAYYKKKPQDNQVPIKTLLIDGNCR-----VED---RGLKTHHGHM 73 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~-----~~~yk~~p~~~~~pi~~~~i~~~~~-----v~d---~g~~~~~~~~ 73 (479)
++||||..|.+.+ ..| ++|||||.+-- +..|+.+-.+ |--...+|+.+. ... -|++.- |+.
T Consensus 4 ~sGyL~k~Gg~~~-KkW-KKRwFvL~qvsQYtfamcsy~ekks~---P~e~~qldGyTvDy~~~~~~~~~~~~~~~-gg~ 77 (117)
T cd01234 4 HCGYLYAIGKNVW-KKW-KKRFFVLVQVSQYTFAMCSYREKKAE---PTEFIQLDGYTVDYMPESDPDPNSELSLQ-GGR 77 (117)
T ss_pred eeEEEEeccchhh-hhh-heeEEEEEchhHHHHHHHhhhhhcCC---chhheeecceEEeccCCCCCCcccccccc-cch
Confidence 8999999887655 345 89999999642 3345544432 222333333321 110 122333 333
Q ss_pred EEEEEEeecccccceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 74 ~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
+| +|..-+.+.+.||+.+-.|---|+.|+=.|-.|
T Consensus 78 ~f----f~avkegd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 78 HF----FNAVKEGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred hh----hheeccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 32 577778999999999999999999999999544
No 90
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.22 E-value=0.39 Score=41.82 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=58.5
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeecccc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~ 85 (479)
.+||=|..+-+. =+..|||+|=...|=|=+..+..+..=.+..+=-.++.|++.-= .+.+-..|.|.++
T Consensus 5 i~eG~L~K~~rk-----~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~--- 73 (104)
T cd01218 5 VGEGVLTKMCRK-----KPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIED---DGIERNGWIIKTP--- 73 (104)
T ss_pred EecCcEEEeecC-----CCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCC---cccccceEEEecC---
Confidence 467777665422 23568899888877663332322211111222223344543211 1123355777775
Q ss_pred cceeeecccCHHHHHHHHHHHHHHHhhh
Q 011686 86 YHRITMAAFNIQEALIWKEKIELVIDQH 113 (479)
Q Consensus 86 ~~~~~~~~~~~~ea~~w~~a~~~a~~~~ 113 (479)
.+-..+.|.|++|-..|+++|++||++.
T Consensus 74 ~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 74 TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999875
No 91
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.62 E-value=0.25 Score=43.98 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=64.0
Q ss_pred eeeeeEEEecceehhhccCCCC---CCccceeeeecCceeEeecCcceee---CeEEEEEEEeecccccceeeecccCHH
Q 011686 24 IHMRYFVLESRLLAYYKKKPQD---NQVPIKTLLIDGNCRVEDRGLKTHH---GHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (479)
Q Consensus 24 ~~~ry~vl~~~~~~~yk~~p~~---~~~pi~~~~i~~~~~v~d~g~~~~~---~~~~yv~~~yn~~~~~~~~~~~~~~~~ 97 (479)
.+.||.+|=.+.+=.=|+.-.. .+--.|..+.-..++|+++...-.- ++--|.|-|=.+.. ...++|.|-|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~-~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG-KTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC-CccEEEEeCCHH
Confidence 5789999999888888866332 2456788888888899988533222 24556666665533 456999999999
Q ss_pred HHHHHHHHHHHHH
Q 011686 98 EALIWKEKIELVI 110 (479)
Q Consensus 98 ea~~w~~a~~~a~ 110 (479)
|-.+||+||+.|+
T Consensus 99 ~K~kWm~al~~a~ 111 (116)
T cd01223 99 LRKKWLKALEMAM 111 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999995
No 92
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=93.08 E-value=1 Score=41.65 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=71.9
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCce-EEEEEEEEEcCCC
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD-LCYVRYWRRNDDG 307 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RD-FV~lr~~r~~edG 307 (479)
.+.....|..+|+++|+++.|+. ..++.-+-|...+|+++= ++.-+-=..+.- ..=|. |.+.. .. ..+
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~~-~~~l~A~l~V~~------k~i~e~F~Trv-~~--~~~ 71 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLERN-ERELIAELDVGF------KGIRETFTTRV-TL--KPT 71 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEeccC-cceeEEEEEEEh------hheeeeeeeee-ee--cCc
Confidence 56677789999999999999986 588999999999999873 433221111110 00122 22221 11 122
Q ss_pred cEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCc
Q 011686 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 365 (479)
Q Consensus 308 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwi 365 (479)
.-+|....++-|=. -+.|+|.+.|+.. + .|+|...+.-+.+.-+
T Consensus 72 ~~~I~~~l~~GPFk----------~L~~~W~F~pl~~--~--~ckV~f~ldfeF~s~l 115 (146)
T COG2867 72 ARSIDMKLIDGPFK----------YLKGGWQFTPLSE--D--ACKVEFFLDFEFKSRL 115 (146)
T ss_pred hhhhhhhhhcCChh----------hhcCceEEEECCC--C--ceEEEEEEEeeehhHH
Confidence 22455555543321 3578999999963 2 7999999999998766
No 93
>PF15408 PH_7: Pleckstrin homology domain
Probab=92.52 E-value=0.065 Score=45.14 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=62.9
Q ss_pred eeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC--CccceeeeecCceeEeecCcceee--CeEEEEEEEeecc
Q 011686 8 EGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHH--GHMVYVLSVYNKK 83 (479)
Q Consensus 8 ~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~--~~pi~~~~i~~~~~v~d~g~~~~~--~~~~yv~~~yn~~ 83 (479)
||.+|+.....| ++||.||.|+++-||-.|.... .--+++-++.. -+|+ |-+... |=+-|-|-.|...
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~-Pm~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSH-PMVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhc-cccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999887776 7899999999999999887544 33344444322 2332 444443 3344555556554
Q ss_pred cccceeeecccCHHHHHHHHHHHHH
Q 011686 84 EKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 84 ~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
..++++=|.+.+--.+|+.++..
T Consensus 73 --~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 --RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred --cchhhhhhhHHHHHHHHHHHhcC
Confidence 46788889999999999988753
No 94
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.42 E-value=0.69 Score=41.72 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=63.9
Q ss_pred eeeEEEeeeccee-----eeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeecCccee---------eCe
Q 011686 8 EGWMVRYGRRKIG-----RSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTH---------HGH 72 (479)
Q Consensus 8 ~gw~~~~~~~~~g-----~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~g~~~~---------~~~ 72 (479)
.|++..+.-++.. +--.+.|||+|=..+|=|=|++..+. .| +--.--..+.|++..-... ...
T Consensus 6 ~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V--~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~ 83 (125)
T cd01221 6 RGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVV--FDYAPRSFLRVEKIEPDNQKIPLGSNLVGRP 83 (125)
T ss_pred EeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEE--EeeccccceEEeecccccccccccccccCCC
Confidence 5778777655432 22246789999999998888776433 32 0000123445554432222 345
Q ss_pred EEEEEEE-eecccccceeeecccCHHHHHHHHHHHH
Q 011686 73 MVYVLSV-YNKKEKYHRITMAAFNIQEALIWKEKIE 107 (479)
Q Consensus 73 ~~yv~~~-yn~~~~~~~~~~~~~~~~ea~~w~~a~~ 107 (479)
-+|.+++ -|...+...+.+-|.+.+|-.+||+||.
T Consensus 84 ~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 84 NLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 5666664 4556788889999999999999999985
No 95
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=92.29 E-value=0.21 Score=53.82 Aligned_cols=97 Identities=14% Similarity=0.268 Sum_probs=61.8
Q ss_pred CceeeeeEEEeeecceeeeeeeeeeEEEecceehh-hccCCCCC-C--ccceeeeecCceeEeecCcceeeCeEEEEEEE
Q 011686 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAY-YKKKPQDN-Q--VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (479)
Q Consensus 4 ~~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~-yk~~p~~~-~--~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~ 79 (479)
....+||++.++... .| ++|||.|.+..+.+ |+..|... . .++...-|...|=|... -..++ =++|.|
T Consensus 376 Dv~~~G~l~k~~~~~---~w-k~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~--~~~~~--~~~~~i 447 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM---RW-KKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV--YSQKH--PNQLVL 447 (478)
T ss_pred CcccceEEeccCCCc---ch-hhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH--hcCCC--CceEEE
Confidence 445899999987643 44 89999999877776 44455433 2 33332224445544100 01112 344556
Q ss_pred eecccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 80 YNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 80 yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
+++- .+++-+-|.+.+|-..||++|+.|+
T Consensus 448 ~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 448 WFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 5544 4578888899999999999999995
No 96
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.03 E-value=1.3 Score=39.15 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=62.7
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC--------CccceeeeecCceeEeecCcceeeCeEEEE
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV 76 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~--------~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv 76 (479)
..+||=+-.+.+.+ .=.+.|||+|=...|=|=|++..-. .-=+|.-+--..+.|.|..= +..+-+-
T Consensus 4 lI~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kna 77 (112)
T cd01261 4 FIMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNA 77 (112)
T ss_pred ccccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCce
Confidence 34788888777543 2346899999999997777654311 12223333333344443311 1123345
Q ss_pred EEEeecccccceeeecccCHHHHHHHHHHHHHHHh
Q 011686 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (479)
Q Consensus 77 ~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~ 111 (479)
|.|.++. .+-..+-|.|+||-..||++|..|++
T Consensus 78 F~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 78 FEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 6666653 34689999999999999999999964
No 97
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.61 E-value=1.4 Score=38.02 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=64.6
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
..+||=+...+. .+.||++|=.+.|=+=|+... .-=.|+-+.-.+.+|.|+=- |. -.-|.|.....
T Consensus 4 Llleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~--~y~~K~~i~~~~l~i~e~~~----~d-~~~F~v~~~~~ 69 (97)
T cd01222 4 LLLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGD--KYQFKAYIPCKNLMLVEHLP----GE-PLCFRVIPFDD 69 (97)
T ss_pred eeeeceEEeecC-------CCceEEEEecccEEEEEecCC--eeEEEEEEEecceEEecCCC----CC-CcEEEEEecCC
Confidence 346676653333 457999998888877675543 45567777778888876421 11 25555555544
Q ss_pred ccceeeecccCHHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
...++.+-|.|.|+-..|+++|+.||
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 44699999999999999999999986
No 98
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=91.18 E-value=9.1 Score=32.94 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=24.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhc
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~ 260 (479)
+....+|+||+++||++|.|.. .-+.|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc
Confidence 4566789999999999998864 46789875
No 99
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=90.74 E-value=11 Score=34.10 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=72.4
Q ss_pred eEEEEEEecccHHHHHHHHhcCCC-CccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCC
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 307 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~-~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edG 307 (479)
.+..+..|+||+++|++++.+... ....|-+.+..+++++-=++--.|-.+.+.+ .. .++ .+.-+-... ++.
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~ 74 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEE 74 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-ccc
Confidence 356788999999999999999753 3457989999999876422223343444421 11 111 222222222 444
Q ss_pred cEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCC
Q 011686 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGW 364 (479)
Q Consensus 308 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGw 364 (479)
...+.++-++-+... . .-....+.+.+.|..+ + +|.|+|.+.-++.+-
T Consensus 75 ~~~~~y~vveg~~~~--~---~~~~y~~t~~v~~~~~--~--~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 75 NKTYKYTVIEGDVLK--D---GYKSYKVEIKFVPKGD--G--GCVVKWTIEYEKKGD 122 (148)
T ss_pred ccEEEEEEEeccccc--C---ceEEEEEEEEEEECCC--C--CEEEEEEEEEEECCC
Confidence 566666666432111 0 1223456788889842 3 699999999997664
No 100
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=90.68 E-value=4.9 Score=37.26 Aligned_cols=139 Identities=13% Similarity=0.035 Sum_probs=76.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEE-EEEEEEc-CCC
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCY-VRYWRRN-DDG 307 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~-lr~~r~~-edG 307 (479)
|.++-.|.+||++|++.|.|.. +--.++..++-++..++...+ ...++ . .+++ ..|-. ++.-... ...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~e~~~-~v~l~--i--g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGDEYTA-KVKLK--I--GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCCeEEE-EEEEe--e--ccee-EEEEEEEEEccccCCCc
Confidence 4566679999999999997742 344678888888888775444 34443 2 3455 33322 1111101 223
Q ss_pred cEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhhhhHHHHHHH-HHHHH
Q 011686 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQML-NSVAG 386 (479)
Q Consensus 308 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~~~s~~~~~l-~~va~ 386 (479)
+|.|-..- .|--..-.......+.|.. . .|+|+|...+|.+|.+..+-+..+.+....++ ..+..
T Consensus 73 ~~~i~g~G---------~~~~g~~~~~~~v~l~~~g--~---gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~ 138 (146)
T COG3427 73 SITINGSG---------GGAAGFADGTVDVQLEPSG--E---GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDC 138 (146)
T ss_pred EEEEEeec---------ccccceeeeeeEEEEEEcC--C---CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33332211 0000001111234445543 2 49999999999999996665555555544443 33455
Q ss_pred HHHHHh
Q 011686 387 LREWFA 392 (479)
Q Consensus 387 LRe~~~ 392 (479)
|++.+.
T Consensus 139 l~~~l~ 144 (146)
T COG3427 139 LSSELA 144 (146)
T ss_pred HHHHHh
Confidence 555543
No 101
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.60 E-value=11 Score=32.96 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhc
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~ 260 (479)
+....+|+|||+.||++|.|.. ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3566789999999999999975 68899863
No 102
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.28 E-value=0.68 Score=40.98 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=65.5
Q ss_pred eeeeeEEEeeecc-eeeeeeeeeeEEEecceehhhccCCCCCCccce-----eeeecCceeEeecCcceeeCeEEEEEEE
Q 011686 6 VYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK-----TLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (479)
Q Consensus 6 ~~~gw~~~~~~~~-~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~-----~~~i~~~~~v~d~g~~~~~~~~~yv~~~ 79 (479)
++|||||. | -|+.==.+|||||+..=|.|+-+.-. ..| | ...=+.|+-..=.|++.+..-.=|-|+|
T Consensus 1 e~~g~Lyl----K~~gkKsWKk~~f~LR~SGLYy~~Kgks--k~s-rdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~ 73 (114)
T cd01259 1 EMEGPLYL----KADGKKSWKKYYFVLRSSGLYYFPKEKT--KNT-RDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGF 73 (114)
T ss_pred CccceEEE----ccCCCccceEEEEEEeCCeeEEccCCCc--CCH-HHHHHHHhcccCcEEEEechhhccCCCCCceEEE
Confidence 36899998 3 25544499999999999987643322 222 2 1223456666667888888888888888
Q ss_pred eecccc---cceeeecccCHHHH-HHHHHHHHHH
Q 011686 80 YNKKEK---YHRITMAAFNIQEA-LIWKEKIELV 109 (479)
Q Consensus 80 yn~~~~---~~~~~~~~~~~~ea-~~w~~a~~~a 109 (479)
=..+.+ ++-|++=|..-|++ ..|+-||+-|
T Consensus 74 K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 74 KAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred eccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 333322 56777666655554 5799999988
No 103
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.08 E-value=0.31 Score=50.79 Aligned_cols=98 Identities=23% Similarity=0.412 Sum_probs=64.5
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEe--cceehhhccCCCCC---CccceeeeecC-ceeEeecCcceeeCeEEEEEE
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDN---QVPIKTLLIDG-NCRVEDRGLKTHHGHMVYVLS 78 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~--~~~~~~yk~~p~~~---~~pi~~~~i~~-~~~v~d~g~~~~~~~~~yv~~ 78 (479)
++-|||+-.-|-. =+.| |+|||+|. |.++ =||.+|++. ..|+---.|-. -+|-.|+-|-. ++.|=|
T Consensus 15 vvkEgWlhKrGE~--IknW-RpRYF~l~~DG~~~-Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFiiRc 86 (516)
T KOG0690|consen 15 VVKEGWLHKRGEH--IKNW-RPRYFLLFNDGTLL-GYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFIIRC 86 (516)
T ss_pred hHHhhhHhhcchh--hhcc-cceEEEEeeCCceE-eeccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEEEe
Confidence 3489999764322 2455 99999996 4555 589999876 46776655544 35556665543 444444
Q ss_pred EeecccccceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 79 ~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
+-=+. -=.-++.+-+++|-..|++||+.+.+.
T Consensus 87 LQWTT--VIERTF~ves~~eRq~W~~AIq~vsn~ 118 (516)
T KOG0690|consen 87 LQWTT--VIERTFYVESAEERQEWIEAIQAVSNR 118 (516)
T ss_pred eeeee--eeeeeeecCCHHHHHHHHHHHHHHhhh
Confidence 32111 112378999999999999999988543
No 104
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.27 E-value=15 Score=32.40 Aligned_cols=108 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCce---eEEEEEEecccCCCccCCceEEEEEEEEEcCCCc
Q 011686 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT---AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (479)
Q Consensus 232 avgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~t---dIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGs 308 (479)
....|+||+++||+++.|.. .-+.|.+.+..++++..-++.. ..+...+.. ++ .. +.........+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~~--~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--FG--IP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--cC--Cc---eEEEEEEEEEcCCC
Confidence 45679999999999999975 5789999999999886432221 222333331 21 11 11111111123344
Q ss_pred EEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCC
Q 011686 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKG 363 (479)
Q Consensus 309 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kG 363 (479)
. +...++.- .+.+ ...-+.++|.+ + +|.||+.+..++.|
T Consensus 75 ~-f~~~~~~G-------~~~~---w~h~~~f~~~~---~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVSG-------PFRS---WRHTHRFEAIG---G--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEeccC-------Cchh---CEEEEEEEECC---C--ceEEEEEEEEeCCc
Confidence 3 33344421 1111 12356788875 2 59999999999854
No 105
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.62 E-value=1.2 Score=39.24 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=57.4
Q ss_pred eeeeeeEEEecceehhhccCCCCC------CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeecccCH
Q 011686 23 FIHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNI 96 (479)
Q Consensus 23 ~~~~ry~vl~~~~~~~yk~~p~~~------~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~ 96 (479)
=.+.|||||=+..|-+....|... ..|++.+.|-.=...+ +.-+.|.|--+.- .++.+-|.|.
T Consensus 27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e---------~~~~aFeI~G~li--~~i~v~C~~~ 95 (111)
T cd01225 27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE---------ALKNAFEISGPLI--ERIVVVCNNP 95 (111)
T ss_pred ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc---------CccceEEEeccCc--CcEEEEeCCH
Confidence 358999999999999999999543 6999888886432222 1145566654443 5788889999
Q ss_pred HHHHHHHHHHHHH
Q 011686 97 QEALIWKEKIELV 109 (479)
Q Consensus 97 ~ea~~w~~a~~~a 109 (479)
+|..+|++-++.-
T Consensus 96 ~e~~~Wl~hL~~~ 108 (111)
T cd01225 96 QDAQEWVELLNAN 108 (111)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 106
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.93 E-value=5.7 Score=35.69 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=70.4
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCC----Cccceeeee-cCceeEeecC----cceeeCeEEE
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLI-DGNCRVEDRG----LKTHHGHMVY 75 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~----~~pi~~~~i-~~~~~v~d~g----~~~~~~~~~y 75 (479)
..|||||=.=..+++++-| -++|.||.+.-+..|-..+... .+|.-.+-+ |+-..|.-.+ ..+-....=|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 4699999776666777878 7899999999999998555322 455444555 5666664211 1111222338
Q ss_pred EEEEeecc----cccceeeecccCHHHHHHHHHHHHHH
Q 011686 76 VLSVYNKK----EKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 76 v~~~yn~~----~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
||+|=-.- -....+-|=|-|-.|-.+|..|+++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 88875422 22355677789999999999999986
No 107
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.91 E-value=3.7 Score=36.33 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=61.6
Q ss_pred eeeeeEEEeeecce--eeeeeeeeeEEEecceehhhccCCCCC-CccceeeeecCceeEeecCcceee-Ce---------
Q 011686 6 VYEGWMVRYGRRKI--GRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHH-GH--------- 72 (479)
Q Consensus 6 ~~~gw~~~~~~~~~--g~~~~~~ry~vl~~~~~~~yk~~p~~~-~~pi~~~~i~~~~~v~d~g~~~~~-~~--------- 72 (479)
.|||||=.=..++. .+.| -++|.||.+.-+..|-...... +-|.- ++| . +..+| +.
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~~~~p~~--vld-------l-~~~fhv~~V~asDVi~a 69 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKENSTPSM--ILD-------I-DKLFHVRPVTQGDVYRA 69 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCccccCCCcEE--EEE-------c-cceeeeecccHHHeeec
Confidence 38999966444344 2456 7899999999999998554332 34422 333 2 22444 22
Q ss_pred ----EEEEEEEeecccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 73 ----MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 73 ----~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
.=|||+|=-. .++..+-|=|-|-+|-.+|..|+..-|
T Consensus 70 ~~kDiP~IF~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 70 DAKEIPKIFQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred CcccCCeEEEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 2378887553 346778888899999999999987543
No 108
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.69 E-value=1.3 Score=51.40 Aligned_cols=108 Identities=20% Similarity=0.369 Sum_probs=81.2
Q ss_pred CCCceeeeeEEEeee-cceeeeeeeeeeEEEecceehhhccCCCCC--CccceeeeecCcee--EeecCcceeeCeEEEE
Q 011686 2 SSKVVYEGWMVRYGR-RKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYV 76 (479)
Q Consensus 2 ~~~~~~~gw~~~~~~-~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~--~~pi~~~~i~~~~~--v~d~g~~~~~~~~~yv 76 (479)
+..++|-|.||.+.- ..+|- | |.|+-+|+|....|+| .|.|. .+||-.+=.-.||+ ||.--|.+--..-=|-
T Consensus 987 ~idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFh 1063 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFH 1063 (1116)
T ss_pred ccceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccCCceeE
Confidence 345679999988863 34565 5 9999999999999998 79887 89987777777775 5655554444444555
Q ss_pred EEEeeccccc---------ceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 77 LSVYNKKEKY---------HRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 77 ~~~yn~~~~~---------~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
+-+|-++... -+.-|||-+.||-.-|+.+|.+++++
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 6666554422 26789999999999999999999765
No 109
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=85.38 E-value=4.2 Score=35.49 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEecc-eehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~~-~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
.++|-+.. +=|.. .++|-|+|... .|-|+ +|.....- -...+...++|+ ..+.+.|+|-+
T Consensus 14 l~~g~v~K----~kgl~-~kkR~liLTd~PrL~Yv--dp~~~~~K-GeI~~~~~l~v~-----~k~~~~F~I~t------ 74 (104)
T PF14593_consen 14 LKQGYVKK----RKGLF-AKKRQLILTDGPRLFYV--DPKKMVLK-GEIPWSKELSVE-----VKSFKTFFIHT------ 74 (104)
T ss_dssp EEEEEEEE----EETTE-EEEEEEEEETTTEEEEE--ETTTTEEE-EEE--STT-EEE-----ECSSSEEEEEE------
T ss_pred EEEEEEEE----eeceE-EEEEEEEEccCCEEEEE--ECCCCeEC-cEEecCCceEEE-----EccCCEEEEEC------
Confidence 37888887 33444 69999999988 66665 46544111 112244677888 55656555532
Q ss_pred ccceeeecccCHHHHHHHHHHHHHHHhhh
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELVIDQH 113 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a~~~~ 113 (479)
..+..-|-. ....|..|.+||++++.+.
T Consensus 75 p~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 75 PKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp TTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 133333333 5567999999999997764
No 110
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=84.27 E-value=0.71 Score=53.73 Aligned_cols=93 Identities=27% Similarity=0.337 Sum_probs=65.1
Q ss_pred eeeeeEEEeeecceeeeeeeeeeEEEec--ceehhhccCCCCCCccceeeeecCc--eeEeecCcceeeCeEEEEEEEee
Q 011686 6 VYEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGN--CRVEDRGLKTHHGHMVYVLSVYN 81 (479)
Q Consensus 6 ~~~gw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~~~~pi~~~~i~~~--~~v~d~g~~~~~~~~~yv~~~yn 81 (479)
.+||.+|.-| -+-.-| ..|||||.. +.|+||..--. ..| +|+||-- --|.-.|-|++..+-||=+..
T Consensus 1635 ~~eG~LyKrG--A~lK~W-k~RwFVLd~~khqlrYYd~~ed--t~p--kG~IdLaevesv~~~~~k~vdekgffdlkt-- 1705 (1732)
T KOG1090|consen 1635 IPEGYLYKRG--AKLKLW-KPRWFVLDPDKHQLRYYDDFED--TKP--KGCIDLAEVESVALIGPKTVDEKGFFDLKT-- 1705 (1732)
T ss_pred Ccccchhhcc--hhhccc-ccceeEecCCccceeeeccccc--ccc--cchhhhhhhhhhcccCccccCccceeeeeh--
Confidence 3899999844 445556 899999975 57888853322 444 4555421 123346778888888876643
Q ss_pred cccccceeeecccCHHHHHHHHHHHHHHH
Q 011686 82 KKEKYHRITMAAFNIQEALIWKEKIELVI 110 (479)
Q Consensus 82 ~~~~~~~~~~~~~~~~ea~~w~~a~~~a~ 110 (479)
..+-..|-|.|+-+|-.|++.|+++|
T Consensus 1706 ---t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 ---TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ---hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 34455788999999999999999874
No 111
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=84.04 E-value=26 Score=33.73 Aligned_cols=134 Identities=10% Similarity=0.157 Sum_probs=86.1
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEE----c
Q 011686 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR----N 304 (479)
Q Consensus 229 ~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~----~ 304 (479)
......+|++|+++|+++-.|+. ..+.|.+++.+.+|++ ++-. .+... +|. .....|.- +
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVld---dkrS--rW~~~---ap~-------g~~v~Wea~it~d 134 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVLD---DKRS--RWKAN---APL-------GLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeeccC---CCcc--ceeEc---CCC-------CceEEEeehhhcc
Confidence 44556689999999999999986 5899999999988754 4432 34444 221 12233432 2
Q ss_pred CCCcEEEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCcc-ccchhhhhHHHHHH-HH
Q 011686 305 DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV-GYLSMFQQHCLFQM-LN 382 (479)
Q Consensus 305 edGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwip-s~v~~~~~s~~~~~-l~ 382 (479)
..|. .|...|++-..+ +..|.|| +.+.++ .+|.|...+.-.|-|++. ..+++++..-+-+. -.
T Consensus 135 ~~~e-~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg----~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~ 199 (217)
T COG5637 135 IPGE-RIQWESLPGARV-ENSGAVR---------FYDAPG----DSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQD 199 (217)
T ss_pred CCCc-EEeeecCCCCcC-CCCccEE---------eeeCCC----CceEEEEEEEecCCccHHHHHHHHHhccchHHHHHH
Confidence 2343 488899865444 4567776 455543 257888788888877774 44566666544433 35
Q ss_pred HHHHHHHHHhh
Q 011686 383 SVAGLREWFAQ 393 (479)
Q Consensus 383 ~va~LRe~~~~ 393 (479)
-+..+|++++.
T Consensus 200 DL~RFk~~~e~ 210 (217)
T COG5637 200 DLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHc
Confidence 56677777766
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=83.40 E-value=1 Score=50.80 Aligned_cols=95 Identities=29% Similarity=0.428 Sum_probs=68.2
Q ss_pred eeeeEEEe--eecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEEEeeccc
Q 011686 7 YEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (479)
Q Consensus 7 ~~gw~~~~--~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~ 84 (479)
-+|-|++. |+-++|...+.||||-|-+.-|.|=|. |. ..||-++.+-.=.-||..--+++.++-+|-. ||+.
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ks-p~--~q~~~~Ipl~nI~avEklee~sF~~knv~qV-V~~d-- 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKS-PG--KQPIYTIPLSNIRAVEKLEEKSFKMKNVFQV-VHTD-- 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEecC-Cc--cCcccceeHHHHHHHHHhhhhccCCCceEEE-EecC--
Confidence 57888876 677899777799999999999998875 44 3444444443333355555566666654322 4444
Q ss_pred ccceeeecccCHHHHHHHHHHHHHH
Q 011686 85 KYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 85 ~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+.+-+-|.|.-||..|+.|++.+
T Consensus 641 --rtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 641 --RTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred --cceeEecCCchHHHHHHHHHHHH
Confidence 47888899999999999999988
No 113
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.38 E-value=13 Score=32.60 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEec--ceehhhccCCCC-------CCccceeeeecCceeEeecCcceeeCeEEEEE
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQD-------NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL 77 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~--~~~~~yk~~p~~-------~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~ 77 (479)
++||||.--.+++|-+|- +.|+...+ +.+.|---.|.. -..+.+-++-....|-.| .-..=|-|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~------~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTE------SIDKRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccC------CccceeeE
Confidence 589999999899998995 44544333 344332222221 122222222222222221 11233666
Q ss_pred EEeecccccceeeecccCHHHHHHHHHHHH
Q 011686 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (479)
Q Consensus 78 ~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~ 107 (479)
-|-.+.-+ ..++|=|.+-.|-..||+||.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 66555544 568999999999999999985
No 114
>PLN02866 phospholipase D
Probab=76.21 E-value=8.8 Score=45.64 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=61.2
Q ss_pred eeeeEEEecceehhhccCCCCCCccceeeeecC----------ceeEeecCcceeeCeEEEEEEEeecccccceeeeccc
Q 011686 25 HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG----------NCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAF 94 (479)
Q Consensus 25 ~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~----------~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~ 94 (479)
.||||||+..+|.|.+ +|.+ ..|.-=+++|. ...+....-+. ...=|-|+|=| -+++++|=|.
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~-~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~ 291 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFD-AKPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTK 291 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCC-CceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEEEC
Confidence 4699999999998875 5654 34666667773 22332222111 11233555533 3677999999
Q ss_pred CHHHHHHHHHHHHHHHhhhccccccCCCccccccccc
Q 011686 95 NIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKS 131 (479)
Q Consensus 95 ~~~ea~~w~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 131 (479)
|..+|..|+.||+.|..+...- -..+|.|-||-.-.
T Consensus 292 s~~~~~~w~~ai~~~~~~~~~~-~~~~hRF~SFAP~r 327 (1068)
T PLN02866 292 SSAKVKDWVAAINDAGLRPPEG-WCHPHRFGSFAPPR 327 (1068)
T ss_pred CHHHHHHHHHHHHHHHhccCcc-ccccCcCCCcCCCc
Confidence 9999999999999995332111 11234566665544
No 115
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.13 E-value=16 Score=32.44 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=56.3
Q ss_pred eeeeeeEEEecceehhhccCCCCC--CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccc--cceeeecccCHHH
Q 011686 23 FIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK--YHRITMAAFNIQE 98 (479)
Q Consensus 23 ~~~~ry~vl~~~~~~~yk~~p~~~--~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~--~~~~~~~~~~~~e 98 (479)
=.+.|.++|=...|=+=|...... ..| +-+.-..+.+.+.|.+-+-++.=.=|.|+.+... .+.+.+=|.|+++
T Consensus 23 K~~eR~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~ 100 (114)
T cd01232 23 KGRERRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQET 100 (114)
T ss_pred CCceeEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHH
Confidence 346677777666665544432211 122 1223344556666665555555566777776653 5788899999999
Q ss_pred HHHHHHHHHHHHhh
Q 011686 99 ALIWKEKIELVIDQ 112 (479)
Q Consensus 99 a~~w~~a~~~a~~~ 112 (479)
-..|+..|+++++|
T Consensus 101 K~~W~~~I~~il~~ 114 (114)
T cd01232 101 KQEWVKKIREILQE 114 (114)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999754
No 116
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.13 E-value=12 Score=33.04 Aligned_cols=98 Identities=9% Similarity=0.196 Sum_probs=59.7
Q ss_pred eeeEEEe-eecceeeeeeeeeeEEEecceehhhccCCCCC---Cccceeee-ecCceeEeecCcce--eeCeE-EEEEEE
Q 011686 8 EGWMVRY-GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLL-IDGNCRVEDRGLKT--HHGHM-VYVLSV 79 (479)
Q Consensus 8 ~gw~~~~-~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~---~~pi~~~~-i~~~~~v~d~g~~~--~~~~~-~yv~~~ 79 (479)
=||+=-- ..+.++.+--++||++|.|+-+-.|+.-|.+. ..|.++-. ++--+||--.|.-. ..++. -|.++.
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 3777542 11233334448999999999999999999865 56666543 33344543333211 11222 233333
Q ss_pred eecccccceeeecccCHHHHHHHHHHHHH
Q 011686 80 YNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (479)
Q Consensus 80 yn~~~~~~~~~~~~~~~~ea~~w~~a~~~ 108 (479)
=+. =..-.|.+-+.+|=+.|.+||.+
T Consensus 82 g~~---vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ---VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc---eeeEEEEecCHHHHHHHHHHHhc
Confidence 332 14446788899999999999975
No 117
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.81 E-value=21 Score=30.38 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=42.8
Q ss_pred ceeeeeeeeeeEEEecc-eehhhccCCCCC----CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeec
Q 011686 18 KIGRSFIHMRYFVLESR-LLAYYKKKPQDN----QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMA 92 (479)
Q Consensus 18 ~~g~~~~~~ry~vl~~~-~~~~yk~~p~~~----~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~ 92 (479)
+-|+ |.|+|=|+|-.. .|-|+ +|... ++|+-+ -+++|+ ..+++.++|- ..++..-|-
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~-----~~~~~~F~I~------Tp~rty~le 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVE-----VKNSSHFFVH------TPNKVYSFE 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEE-----EecCccEEEE------CCCceEEEE
Confidence 5566 679999999653 23332 56544 556444 156676 6666666661 112222221
Q ss_pred ccCHHHHHHHHHHHHHH
Q 011686 93 AFNIQEALIWKEKIELV 109 (479)
Q Consensus 93 ~~~~~ea~~w~~a~~~a 109 (479)
.--..|.+|+++|+++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 1125789999999987
No 118
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=64.07 E-value=95 Score=27.44 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=65.1
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcCCCcE
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~edGsy 309 (479)
||....+++|++++|+.|.+. ....--.....--.+.+|.|-+ |..- .+.+--+.+.-.....+..|
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s--~~~DI~~~tgk~~~~~~L~G~~---Y~K~--------~~~~~~~~v~It~~~~~~~Y 67 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS--LLYDIKQATGKKLPVKQLKGFS---YQKK--------FKNKREAKVKITEYEPNKRY 67 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH--HHHHHHHHcCCCCChhhcCCcE---EEEE--------cCCCCEEEEEEEEEcCCCEE
Confidence 577788999999999999762 1222212222211223342222 3321 11222444443333356677
Q ss_pred EEEEEeccCCCCCCCCCeEEEEEcceEEEEEeCCCCCCCCeeEEEEEEeeecCCCccccchhh
Q 011686 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMF 372 (479)
Q Consensus 310 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i~~vD~kGwips~v~~~ 372 (479)
.+.+.|-.. ...-.|.|+|++. | .|.|+|-=.....++...+-+.+
T Consensus 68 ~~~~~s~~~-------------~~~i~Y~i~~~~~--~--~~~v~y~E~~~~~~~~~~~n~~l 113 (120)
T PF11687_consen 68 AATFSSSRG-------------TFTISYEIEPLDD--G--SIEVTYEEEYESKGFFQKLNNKL 113 (120)
T ss_pred EEEEEecCC-------------CEEEEEEEEECCC--C--cEEEEEEEEEccCCHHHHHHHHH
Confidence 776666521 1245799999974 3 69999999999888776554443
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.14 E-value=49 Score=30.18 Aligned_cols=92 Identities=11% Similarity=0.186 Sum_probs=63.5
Q ss_pred eeeeeEEEecceehhhccCC--CCC-CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeecccCHHHHH
Q 011686 24 IHMRYFVLESRLLAYYKKKP--QDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEAL 100 (479)
Q Consensus 24 ~~~ry~vl~~~~~~~yk~~p--~~~-~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~~ea~ 100 (479)
++.|+++|=.+.+=.=|+.. ... ..| +-+-=.++.+.+.|..-+-++.-.=|.||.+.- ...+.+=|.|+|.-.
T Consensus 29 ~~eRhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~ 105 (133)
T cd01227 29 PMQRHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKA 105 (133)
T ss_pred CceeEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHH
Confidence 45799988877776666552 110 223 123334455666666555555565677777664 678999999999999
Q ss_pred HHHHHHHHHHhhhccccc
Q 011686 101 IWKEKIELVIDQHQESQV 118 (479)
Q Consensus 101 ~w~~a~~~a~~~~~~~~~ 118 (479)
+|++.|.+.+.+|.+..-
T Consensus 106 ~Wv~~I~~iL~~Q~~~lk 123 (133)
T cd01227 106 AWVNEIRKVLTSQLQACK 123 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999877544
No 120
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=59.89 E-value=23 Score=39.51 Aligned_cols=95 Identities=24% Similarity=0.312 Sum_probs=60.7
Q ss_pred eeeeEEEeeecceeeeeeeeeeEEEecceehhhc---cCCCCC-CccceeeeecCceeEeecCcceeeCeEEEEEEEeec
Q 011686 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK---KKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK 82 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk---~~p~~~-~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~ 82 (479)
-||-++.+-.+ ..-.-.||++|=...+-|-| +.|... ++- -..-|++....++.-.+ -++.|++=.
T Consensus 274 KEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r-~~~s~~~~~v~~~~~~~--~~~tF~~~G---- 343 (623)
T KOG4424|consen 274 KEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSKYEVR-ARCSISHMQVQEDDNEE--LPHTFILTG---- 343 (623)
T ss_pred hccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccceeccc-eeeccCcchhccccccc--CCceEEEec----
Confidence 58888887666 33447899999887665543 333333 221 11222333333321111 134555443
Q ss_pred ccccceeeecccCHHHHHHHHHHHHHHHhhh
Q 011686 83 KEKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (479)
Q Consensus 83 ~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~~ 113 (479)
+.+-++|+|.+.||...|+.+|..|||.|
T Consensus 344 --~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 344 --KKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred --ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999987
No 121
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=55.81 E-value=9.8 Score=44.18 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=63.7
Q ss_pred eeeeeeeEEEecceehhhccCCCCC---CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeecccCHHH
Q 011686 22 SFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQE 98 (479)
Q Consensus 22 ~~~~~ry~vl~~~~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~~e 98 (479)
.+++-|||+|.|.+|..||..-... +-||.++.+=-++ +++..--..|-|++| .+ -++.-+-|.++-|
T Consensus 1049 ~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv------kkklKpPt~wg~T~i--~e-khh~~l~cd~s~~ 1119 (1186)
T KOG1117|consen 1049 NKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV------KKKLKPPTSWGFTAI--SE-KHHWYLCCDSSSE 1119 (1186)
T ss_pred CccceEEEEecCcEEEEeehhhccccccccccccceEEecc------ccccCCCCccceeee--ee-cceEEEecCCccc
Confidence 4779999999999999999877655 8999998764433 345566678999999 33 3478889999999
Q ss_pred HHHHHHHHHHH
Q 011686 99 ALIWKEKIELV 109 (479)
Q Consensus 99 a~~w~~a~~~a 109 (479)
--.|+..|=-|
T Consensus 1120 ~~ewfts~fka 1130 (1186)
T KOG1117|consen 1120 QTEWFTSIFKA 1130 (1186)
T ss_pred cchhhhhhhhh
Confidence 99999988777
No 122
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=1.2e+02 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.4
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhh
Q 011686 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (479)
Q Consensus 227 ~~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~ 259 (479)
...++.+.+|++||+.||+++.+-. .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 3588999999999999999998743 6778987
No 123
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.44 E-value=43 Score=29.08 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=45.0
Q ss_pred eeeeeeEEE--ecceehhhccCC-CCC------CccceeeeecCceeEeecCcc--eeeCeEEEEEEEeecccccceeee
Q 011686 23 FIHMRYFVL--ESRLLAYYKKKP-QDN------QVPIKTLLIDGNCRVEDRGLK--THHGHMVYVLSVYNKKEKYHRITM 91 (479)
Q Consensus 23 ~~~~ry~vl--~~~~~~~yk~~p-~~~------~~pi~~~~i~~~~~v~d~g~~--~~~~~~~yv~~~yn~~~~~~~~~~ 91 (479)
-...|+|-| ++..|.+....+ ... ..=||.|---.+-+......+ ..-.+-|=| ||......+-+-|
T Consensus 20 ~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTI--iy~~~~~~k~L~l 97 (115)
T cd01248 20 RERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTI--VYGTDLNLKSLDL 97 (115)
T ss_pred ceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEE--EECCCCCeeEEEE
Confidence 446788888 577777665444 111 223344432222222211111 122222222 1333223556999
Q ss_pred cccCHHHHHHHHHHHHH
Q 011686 92 AAFNIQEALIWKEKIEL 108 (479)
Q Consensus 92 ~~~~~~ea~~w~~a~~~ 108 (479)
-|.|.++|..|...++.
T Consensus 98 VA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 98 VAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EECCHHHHHHHHHHHhh
Confidence 99999999999998864
No 124
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=43.74 E-value=60 Score=38.15 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=57.9
Q ss_pred eeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecCccee-eCeEEEEEEEeecccccceeeecccCHHH
Q 011686 20 GRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-HGHMVYVLSVYNKKEKYHRITMAAFNIQE 98 (479)
Q Consensus 20 g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g~~~~-~~~~~yv~~~yn~~~~~~~~~~~~~~~~e 98 (479)
++.=+..+|-||.|-.|.||...-+ -.|.-.+-|+.=.-|.-.=-+++ +-+++|+|.+|=..+ .-..+|+.++++
T Consensus 514 ~~Ee~nr~wcVlg~g~ls~fen~~S--~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~e--r~~~fgle~ad~ 589 (1186)
T KOG1117|consen 514 LREETNRKWCVLGGGFLSYFENEKS--TTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGE--RVFLFGLETADA 589 (1186)
T ss_pred hcccCCCceEEcCcchhhhhhhcCC--CCCCceeeccceEEEeecCCCCCCCcCceeEEEEeeccc--ceEEeecccHHH
Confidence 4555678899999999999976544 33422222222111211111222 457999999997765 778999999999
Q ss_pred HHHHHHHHHHH
Q 011686 99 ALIWKEKIELV 109 (479)
Q Consensus 99 a~~w~~a~~~a 109 (479)
+.+|-+|+-..
T Consensus 590 l~~wt~aiaKh 600 (1186)
T KOG1117|consen 590 LRKWTEAIAKH 600 (1186)
T ss_pred HHHHHHHHHHh
Confidence 99999998644
No 125
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=43.47 E-value=26 Score=38.17 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.4
Q ss_pred eeCeEEEEEEEeecccccceeeecccCHHHHHHHHHHHHHHHh
Q 011686 69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (479)
Q Consensus 69 ~~~~~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~ 111 (479)
...+.=|||.+.++-. +++-|=|.+.+|...||++|++++.
T Consensus 450 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 450 TGSNAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred hCCCCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhcC
Confidence 3334568999988865 7899999999999999999999963
No 126
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=42.35 E-value=3.4e+02 Score=26.63 Aligned_cols=120 Identities=9% Similarity=0.080 Sum_probs=76.9
Q ss_pred ceEEEEEEeccc--HHHHHHHHhcCCCCccchhhccceeEEEEEecCceeEEEEEEecccCCCccCCceEEEEEEEEEcC
Q 011686 228 RAMKAVGVVEAS--CEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND 305 (479)
Q Consensus 228 ~~~KavgvV~a~--pe~Vf~lL~dld~~R~eWD~~~~~~evVe~iDd~tdIVY~~~~~~~~p~~vs~RDFV~lr~~r~~e 305 (479)
.+-|....|.-| -.+|...|+|.+. -...|..+..++++...+++..++.++++... +-..|=|-.|..--...
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn~-~~~fn~~~ikgki~RvYnpNLvmiqqry~~~~---~~~~~YfyaLa~Kv~iS 134 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFND-NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDAS---GSPNKYFYALATKVKVS 134 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhcccc-ccCCCchheeeeEEEEeCCCeEEEEeecCCCC---CCcceEEeEeeeeeecC
Confidence 466778788644 7999999998653 45689999999999999999999888876321 12233343343333334
Q ss_pred CCcEEEEEEeccCCCC-CC-CCC--------------------------eEEEEEcceEEEEEeCCCCCCCCeeEEEEE
Q 011686 306 DGSYVVLFRSREHENC-GP-QPG--------------------------YVRAHVESGGFNISPLKPRNGRPRTQVQHL 356 (479)
Q Consensus 306 dGsyvI~~~SV~hp~~-Pp-~~G--------------------------~VRa~i~~gGwvI~Pl~~~~g~~~t~Vt~i 356 (479)
....+|++.|..--.. |. .+. .-...+..+||+|+.-.+ ...|||+
T Consensus 135 ed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d-----~v~iTyi 208 (208)
T TIGR01599 135 EDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD-----NIDITYV 208 (208)
T ss_pred CCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC-----cEEEEEC
Confidence 4566788888753222 11 111 233466778888887652 4667764
No 127
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=41.27 E-value=26 Score=38.45 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=39.9
Q ss_pred eeeeEEEeeecceeeeeee---eeeEEEecceehhhccCCCCC-----CccceeeeecCcee
Q 011686 7 YEGWMVRYGRRKIGRSFIH---MRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNCR 60 (479)
Q Consensus 7 ~~gw~~~~~~~~~g~~~~~---~ry~vl~~~~~~~yk~~p~~~-----~~pi~~~~i~~~~~ 60 (479)
--||+=+.|-=+-=-.|+| .|||||+.+-|.|||.+-... ..-+++++|..+=-
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEf 81 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEF 81 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccc
Confidence 3588877776666666666 899999999999999877543 46667777776543
No 128
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=40.55 E-value=2.3e+02 Score=24.03 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=24.5
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhc
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~ 260 (479)
+....+|+|||+.||++|.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4567789999999999998864 57789755
No 129
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=36.38 E-value=66 Score=36.24 Aligned_cols=100 Identities=12% Similarity=0.197 Sum_probs=62.4
Q ss_pred eeeeeeeeEEEecceehhhccCCCCCC----ccceeeeecCceeEeecCcceeeCeE-EEEEEEeecccccceeeecccC
Q 011686 21 RSFIHMRYFVLESRLLAYYKKKPQDNQ----VPIKTLLIDGNCRVEDRGLKTHHGHM-VYVLSVYNKKEKYHRITMAAFN 95 (479)
Q Consensus 21 ~~~~~~ry~vl~~~~~~~yk~~p~~~~----~pi~~~~i~~~~~v~d~g~~~~~~~~-~yv~~~yn~~~~~~~~~~~~~~ 95 (479)
..-...||.+|=.+.+-.-||+..+.+ +-+-.-.+ .+.-+.|+--+.+|+.+ =|-|-+....+. .+++|=|-+
T Consensus 419 ~~tkqdRyiFLfDkvviVCKrkG~sy~lke~i~l~~y~m-~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~-ngl~fy~Kt 496 (865)
T KOG2996|consen 419 AHTKQDRYIFLFDKVVIVCKRKGDSYELKEIIYLNAYKM-SDDPIDDKDNKKVSTITWSYGFYLIHTQGR-NGLEFYCKT 496 (865)
T ss_pred cCCccceEEeEecceEEEeeccCcchhHHHHHHHHhhcc-ccCCCCchhhhhccceeeeeeEEEEEEcCC-cceEEEEec
Confidence 344567999999999999999987541 11001111 11122344444445443 244445555553 378999999
Q ss_pred HHHHHHHHHHHHHHHhhh-ccccccCCC
Q 011686 96 IQEALIWKEKIELVIDQH-QESQVSNGN 122 (479)
Q Consensus 96 ~~ea~~w~~a~~~a~~~~-~~~~~~~~~ 122 (479)
-+=-.+||++|+.|+--. -++..+++|
T Consensus 497 e~~kkkWmeqfema~SNi~Pdya~an~H 524 (865)
T KOG2996|consen 497 EDLKKKWMEQFEMAKSNISPDYARANNH 524 (865)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCc
Confidence 999999999999996543 244555555
No 130
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.03 E-value=38 Score=29.40 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhhcc
Q 011686 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSF 261 (479)
Q Consensus 230 ~KavgvV~a~pe~Vf~lL~dld~~R~eWD~~~ 261 (479)
++...+|+||+++||+++.+.+ ...+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5677899999999999998865 467898653
No 131
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=30.94 E-value=47 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.8
Q ss_pred EEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 77 ~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
|++.|+. .+-.++=|.+..|-+.||++|++.
T Consensus 63 ~~~~~~~--~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKN--GKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccC--CceEEEEecCHHHHHHHHHHHHHH
Confidence 6777554 677888899999999999999875
No 132
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.17 E-value=39 Score=30.68 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=27.0
Q ss_pred ceEEEEEEecccHHHHHHHHhcCCCCccchhh
Q 011686 228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (479)
Q Consensus 228 ~~~KavgvV~a~pe~Vf~lL~dld~~R~eWD~ 259 (479)
..+....+|+||+++||++|.|.+ ...+|..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 578999999999999999998854 5778987
No 133
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=29.86 E-value=76 Score=35.57 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=48.1
Q ss_pred eeeeeeeEEEecceehhhccCCCCC---CccceeeeecCceeEeecCcceeeCeEEEEEEEeecccccceeeecccCHHH
Q 011686 22 SFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQE 98 (479)
Q Consensus 22 ~~~~~ry~vl~~~~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~~yn~~~~~~~~~~~~~~~~e 98 (479)
-|.|+|+|+|-..--.+|=..|..+ ++|++. +||+| ..+.+.++|.+=++..--.+ =-+.
T Consensus 463 lf~rkr~lllTn~~rll~~~~~~~~lk~eip~~~-----~~~~e-----~~n~~~~~i~TP~k~~~l~d-------~~~~ 525 (604)
T KOG0592|consen 463 LFARKRMLLLTNGPRLLYVDPQNLVLKGEIPWSP-----DLRVE-----LKNSSTFFIHTPNKVYYLED-------PEQR 525 (604)
T ss_pred hhhceeEEEecCCCeEEEEecccceeccccccCc-----cccee-----eccCcceEEECCccceeccC-------cccc
Confidence 4778899999765444454444444 788887 77777 77888888887542222111 2356
Q ss_pred HHHHHHHHHHH
Q 011686 99 ALIWKEKIELV 109 (479)
Q Consensus 99 a~~w~~a~~~a 109 (479)
|..|-+|++++
T Consensus 526 as~w~~ai~~~ 536 (604)
T KOG0592|consen 526 ASVWCKAIETV 536 (604)
T ss_pred hhHHHHhhhhh
Confidence 88999999998
No 134
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=28.15 E-value=1.2e+02 Score=34.44 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=66.9
Q ss_pred CCceeeeeEEEeeecceeeeeeeeeeEEE--ecceehhh--ccCCCCCCccceeeeecCceeEeecCcceeeCeEEEEEE
Q 011686 3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYY--KKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (479)
Q Consensus 3 ~~~~~~gw~~~~~~~~~g~~~~~~ry~vl--~~~~~~~y--k~~p~~~~~pi~~~~i~~~~~v~d~g~~~~~~~~~yv~~ 78 (479)
+...+||.+|--..++||.+| -|-|-|- +.+.++|- ..+|...+-|.-+...-.|.| |--+++..+--|=.+
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~R---RktdSIdKRFCFDve 338 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSR---RKTDSIDKRFCFDVE 338 (812)
T ss_pred CCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCcCCCcceEEehhhcc---Ccccccccceeeeee
Confidence 445699999999999999998 5556553 34455542 223333355666666666665 223344444444444
Q ss_pred EeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 79 ~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+ -+....|+|-|-+-++-.-||+|+.-+
T Consensus 339 ~---~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 339 V---EERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred e---cccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 3 355779999999999999999998766
No 135
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.17 E-value=73 Score=37.31 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=33.9
Q ss_pred eEEEEEEEeecccccceeeecccCHHHHHHHHHHHHHHHhhhccc
Q 011686 72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116 (479)
Q Consensus 72 ~~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~~~~~ 116 (479)
...|||.+-=+.--..-+.+||.+.|||-.|+.+|+++ .+-++.
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~-t~~a~t 915 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREI-TWKADT 915 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHH-HHHhhh
Confidence 46777777666655566899999999999999999988 343444
No 136
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=24.09 E-value=78 Score=34.38 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=72.4
Q ss_pred CceeeeeEEEeeecceeeeeeeeeeEEEecc-------eehhhccCCCCC---CccceeeeecCceeEeecCcceeeCeE
Q 011686 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESR-------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHM 73 (479)
Q Consensus 4 ~~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~-------~~~~yk~~p~~~---~~pi~~~~i~~~~~v~d~g~~~~~~~~ 73 (479)
..++.|-+|. -++|||.---+++|.+|.+- ++-++-+++... ..=+|+-+-+.+|-=-+.||+-.-|.-
T Consensus 7 ~~~k~g~~~~-~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~ 85 (429)
T KOG4047|consen 7 CLVKDGVPDN-HRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPG 85 (429)
T ss_pred cccccCccch-hhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCC
Confidence 3456666654 67888877779999998763 333442222221 444556677777777778888888889
Q ss_pred EEEEEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 74 ~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
+|+|..-+..+ .|.|.+.=+++.|+.+|.+-
T Consensus 86 i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~ 116 (429)
T KOG4047|consen 86 ITAFFCDRAEE-----LFNMLQDLMQANWINAIEEP 116 (429)
T ss_pred ceEEEecchHH-----HHHHHHHHHhhhhhhhhhhc
Confidence 99998877766 78899999999999999876
No 137
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=23.94 E-value=95 Score=27.65 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=63.6
Q ss_pred ceeeeeEEEeeecceeeeeeeeeeEEEecceehhhccCCCCCCccceeeeecCceeEeecC--cceeeCeEEEEEEEeec
Q 011686 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRG--LKTHHGHMVYVLSVYNK 82 (479)
Q Consensus 5 ~~~~gw~~~~~~~~~g~~~~~~ry~vl~~~~~~~yk~~p~~~~~pi~~~~i~~~~~v~d~g--~~~~~~~~~yv~~~yn~ 82 (479)
..++|.++.+| +++=-+| -+|||-|=++.|..|-..-. + .| .++.=. .|+|.. -..+.|..--+++|=|
T Consensus 3 cIvhGyi~KLG-GPFls~W-Q~Ry~~LfPNRLE~~~~~~~-~-~~--eLi~M~--~i~~V~~e~~~iK~~~CI~ik~k~- 73 (116)
T cd01240 3 CIVHGYIKKLG-GPFLSQW-QTRYFKLYPNRLELYGESEA-N-KP--ELITMD--QIEDVSVEFQQIKEENCILLKIRD- 73 (116)
T ss_pred eEEeeehhhhC-CHHHHHH-HHHHheeCcceeeecccccc-c-CC--cEEEee--hhhhcchhheeeccCceEEEEEcC-
Confidence 45788888766 3555566 78999999999999733221 1 11 111100 112222 1233555556666655
Q ss_pred ccccceeeecccCHHHHHHHHHHHHHHHhhhcccc
Q 011686 83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117 (479)
Q Consensus 83 ~~~~~~~~~~~~~~~ea~~w~~a~~~a~~~~~~~~ 117 (479)
..++-|-|.+-=+...|++.+++|-...|+-.
T Consensus 74 ---~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ll 105 (116)
T cd01240 74 ---EKKIVLTNSDEIELKQWKKELRDAHRESQQLL 105 (116)
T ss_pred ---CceEEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888899999999999977766643
No 138
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=23.93 E-value=1.3e+02 Score=27.37 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=29.1
Q ss_pred eeCeEEEEEEEeecccccceeeecccCHHHHHHHHHHHHHH
Q 011686 69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (479)
Q Consensus 69 ~~~~~~yv~~~yn~~~~~~~~~~~~~~~~ea~~w~~a~~~a 109 (479)
-.++.+|=|+|-.---....++|=|.+..+=.+|+++|+++
T Consensus 94 ~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 94 SDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp --TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 34688999999544433444999999999999999999987
No 139
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=22.46 E-value=1.9e+02 Score=25.63 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=36.2
Q ss_pred CcceeeCeEEEEEEEeecc-------------cccceeeecccCHHHHHHHHHHHHHHHhh
Q 011686 65 GLKTHHGHMVYVLSVYNKK-------------EKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (479)
Q Consensus 65 g~~~~~~~~~yv~~~yn~~-------------~~~~~~~~~~~~~~ea~~w~~a~~~a~~~ 112 (479)
|++...+++|.=..||+.. +...+.=|.-.+.+||.+..+++++||+.
T Consensus 49 g~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~~v~GLnF~Se~eA~~F~~~v~~Al~~ 109 (111)
T cd01207 49 GRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDARQVYGLNFGSKEDATMFASAMLSALEV 109 (111)
T ss_pred EeecCCCcEEEEEEecCCceeeecCCcceeeecCCeEEeeccCCHHHHHHHHHHHHHHHHh
Confidence 5555567777777776653 33456677788999999999999999864
Done!