BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011687
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/430 (27%), Positives = 207/430 (48%), Gaps = 37/430 (8%)
Query: 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPR-----SEI 63
+K ++M+PYP QGH+ P+ KLA +L RGF + E+ H ++ S P+ ++
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 64 SCMSIPDGLEKNE-----PKDFFAI-EKVIENIMPIHLERLINKINEDGRV---ACVVVD 114
+ SIPDGL E +D + + V +N + + E L+ ++N V C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCE-LLTRLNHSTNVPPVTCLVSD 125
Query: 115 LLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYI----SDTGSPQHLESTA 170
S I A +P ++ + + + ++ G I + LE+
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 171 RFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQ 230
++P +D+ I T +F+ +R +L+N+F E D I
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVI--- 242
Query: 231 YHHSKGATLCRPKVLLVGPLSK--------HATIAKNPSLWEEDKSCIDWLDNQKPNSVI 282
++ +T+ P + +GPL H + + +LW+ED C+DWL++++P SV+
Sbjct: 243 --NALSSTI--PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVV 298
Query: 283 YISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSN--SRQGKV 340
Y++FGS + + E++ A L F+W++ G + +N + +G +
Sbjct: 299 YVNFGS-TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLI 357
Query: 341 VPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIG 400
W PQ KVL H ++G +LTHCGWNST E+I +G +LC+P DQ +C +I W+IG
Sbjct: 358 ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG 417
Query: 401 IRVNGFGKRD 410
+ ++ KR+
Sbjct: 418 MEIDTNVKRE 427
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 172/374 (45%), Gaps = 36/374 (9%)
Query: 98 LINKINEDGR-VACVVVDLLASSAIGVACRCGVPAAGFW---PAMLATYCLIDAIPEMIK 153
++ + E GR V+C+V D A +A GV FW P L+T+ ID I E I
Sbjct: 102 MVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIG 161
Query: 154 SGYISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNL-- 211
+G + F+P + DL I + +SR L R +
Sbjct: 162 V-----SGIQGREDELLNFIPGMSKVRFRDLQEGI----VFGNLNSLFSRMLHRMGQVLP 212
Query: 212 --KWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSC 269
+ +NSF E +DD SK T L +GP + + P + C
Sbjct: 213 KATAVFINSF--EELDDSLTNDLKSKLKTY-----LNIGPFN----LITPPPVVPNTTGC 261
Query: 270 IDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYL 329
+ WL +KP SV+YISFG+ +P E V L+ LEA +PFIW L R LP+G+L
Sbjct: 262 LQWLKERKPTSVVYISFGTVTTPPPAEVV-ALSEALEASRVPFIWSLRDKARVHLPEGFL 320
Query: 330 DRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFIN 389
++ G VVPWAPQ +VL H AVG ++THCGWNS E++ G L+C P GDQ +N
Sbjct: 321 EKTRG--YGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 390 CAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNL-YMRTMGDD--GARAR 444
+ + +IG+R+ G F K + ++ + K NL +R D G +
Sbjct: 379 GRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGS 438
Query: 445 VMNNLTGFVDDLSK 458
N VD +SK
Sbjct: 439 STENFITLVDLVSK 452
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 212/450 (47%), Gaps = 43/450 (9%)
Query: 2 VNMMCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP--------EFIHNQI 53
++M K ++++ +P P GH+ + A +LT+ + + IT F + I
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHD-KNLYITVFCIKFPGMPFADSYI 59
Query: 54 TSSMDPRSEISCMSIPDGLEKNEPKDF-----FAIEKVIENIMPIHLERLINKINEDGRV 108
S + + +I + +P+ + P++ F I +E+++P H++ I I + +V
Sbjct: 60 KSVLASQPQIQLIDLPE--VEPPPQELLKSPEFYILTFLESLIP-HVKATIKTILSN-KV 115
Query: 109 ACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLES 168
+V+D S I V G+P+ F + + L+ ++ D+ L
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL- 174
Query: 169 TARFLPNQPMLSTEDLPWLIGTPAA--RKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDD 226
N P +S + +P + A + + + + ER R+ K ++VN+F +
Sbjct: 175 ------NIPGISNQ-VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 227 IKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCI-DWLDNQKPNSVIYIS 285
I Y H + P + VGPL NP L + I WLD Q SV+++
Sbjct: 228 IDALYDHDEKI----PPIYAVGPLLDLKG-QPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 286 FGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP 345
FGS G +++ +AL L+ G+ F+W A ++ P+G+L+ + +G + WAP
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAP 341
Query: 346 QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKI--GIRV 403
Q++VL H A+G +++HCGWNS +E++ G +L +P+ +Q +N +VK W + G+RV
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 404 NG------FGKRDIEDGLKKLKEDSEMKHR 427
+ +IE GLK L + + H+
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMDKDSIVHK 431
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 211/450 (46%), Gaps = 43/450 (9%)
Query: 2 VNMMCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP--------EFIHNQI 53
++M K ++++ +P P GH+ + A +LT+ + + IT F + I
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHD-KNLYITVFCIKFPGMPFADSYI 59
Query: 54 TSSMDPRSEISCMSIPDGLEKNEPKDF-----FAIEKVIENIMPIHLERLINKINEDGRV 108
S + + +I + +P+ + P++ F I +E+++P H++ I I + +V
Sbjct: 60 KSVLASQPQIQLIDLPE--VEPPPQELLKSPEFYILTFLESLIP-HVKATIKTILSN-KV 115
Query: 109 ACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLES 168
+V+D S I V G+P+ F + + L+ ++ D+ L
Sbjct: 116 VGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLL- 174
Query: 169 TARFLPNQPMLSTEDLPWLIGTPAA--RKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDD 226
N P +S + +P + A + + + + ER R+ K ++VN+F +
Sbjct: 175 ------NIPGISNQ-VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSS 227
Query: 227 IKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCI-DWLDNQKPNSVIYIS 285
I Y H + P + VGPL NP L + I WLD Q SV+++
Sbjct: 228 IDALYDHDEKI----PPIYAVGPLLDLKG-QPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 286 FGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP 345
FGS G +++ +AL L+ G+ F+W A ++ P+G+L+ + +G + WAP
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLWS-NSAEKKVFPEGFLEWMELEGKGMICGWAP 341
Query: 346 QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV-- 403
Q++VL H A+G +++HCGWNS +E++ G +L +P+ +Q +N +VK W +G+ +
Sbjct: 342 QVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRV 401
Query: 404 ------NGFGKRDIEDGLKKLKEDSEMKHR 427
+ +IE GLK L + + H+
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLMDKDSIVHK 431
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 127/487 (26%), Positives = 214/487 (43%), Gaps = 70/487 (14%)
Query: 5 MCTKKKNKILMVPYPAQGHVTPM----------HKLASILTSRGFEPIVITPEFIHNQIT 54
M K + ++P P GH+ P+ H L G P + + +
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 55 SSMD----PRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKINEDGRV-A 109
SS+ P +++ +S +E I + P L ++ + E GR+
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESR-------ISLTVTRSNP-ELRKVFDSFVEGGRLPT 112
Query: 110 CVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLEST 169
+VVDL + A VA VP F+P +P++ +T S + E T
Sbjct: 113 ALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL------DETVSCEFRELT 166
Query: 170 ARF-LPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIK 228
LP ++ +D +L + +K+ +R + + +LVN+F E + IK
Sbjct: 167 EPLMLPGCVPVAGKD--FLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIK 224
Query: 229 QQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGS 288
L +P V VGPL I K + E+ C+ WLDNQ SV+Y+SFGS
Sbjct: 225 ALQEPG----LDKPPVYPVGPL---VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGS 277
Query: 289 WVSPIGEEKVKTLALTLEALGLPFIWVL----GFAWREG------------LPDGYLDRV 332
+ + E++ LAL L F+WV+ G A LP G+L+R
Sbjct: 278 GGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLER- 335
Query: 333 SNSRQGKVVP-WAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCA 391
++G V+P WAPQ +VL H + G +LTHCGWNST+E++ SG L+ +P+ +Q +N
Sbjct: 336 -TKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Query: 392 YIVKMWKIGIRV----NGFGKRD----IEDGLKKLKEDSEMKHRLMNL---YMRTMGDDG 440
+ + + +R +G +R+ + GL + +E +++++ L R + DDG
Sbjct: 395 LLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDG 454
Query: 441 ARARVMN 447
+ ++
Sbjct: 455 TSTKALS 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 177/408 (43%), Gaps = 44/408 (10%)
Query: 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSE-----ISCMS 67
+ ++ +P H P+ L + + P V F ++ RS I +
Sbjct: 16 VAVLAFPFGTHAAPLLSLVKKIATEA--PKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYN 73
Query: 68 IPDGLEKN-----EPKD--FFAIEKVIENIMPIHLERLINKINEDGR-VACVVVDLLASS 119
+ DGL K P++ F I+ + EN + + + E G+ + C+V D
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHV----IDEAVAETGKNITCLVTDAFFWF 129
Query: 120 AIGVACRCGVPAAGFW---PAMLATYCLIDAIPEMIKSGYISDTGSPQHLESTARFLPNQ 176
+A W P L T+ D I E S + D S LP
Sbjct: 130 GADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKS-------IDVLPGF 182
Query: 177 PMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKG 236
P L DLP + LE R + +NSF + + + +SK
Sbjct: 183 PELKASDLPEGVIKDIDVPFATMLHKMGLELPR-ANAVAINSF--ATIHPLIENELNSKF 239
Query: 237 ATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEE 296
L L VGP + K ++ C++WLD + +SV+YISFGS V+P E
Sbjct: 240 KLL-----LNVGPFNLTTPQRK----VSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHE 290
Query: 297 KVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVG 356
+ LA +LE G PFIW +E LP G+L+R +GK+V WAPQ+++L+H++VG
Sbjct: 291 -LTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKT--KGKIVAWAPQVEILKHSSVG 347
Query: 357 FYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVN 404
+LTH GWNS +E I G ++ P GDQ +N + +IG+ V+
Sbjct: 348 VFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD 395
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Query: 267 KSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPD 326
K D++ + N V+ S GS VS EE+ +A L + +W + PD
Sbjct: 9 KEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW----RFDGNKPD 64
Query: 327 GYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQ 386
++ W PQ +L H ++TH G N EAI G + P+ DQ
Sbjct: 65 TL------GLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 387 FINCAYIVKMWKIGIRV--NGFGKRDIEDGLKKLKEDSEMKHRLMNL 431
N A+ K +RV N D+ + LK++ D K + L
Sbjct: 119 PDNIAH-XKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKL 164
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 287 GSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWRE------GLPDGYL-----DRVSNS 335
G W P G EKV L +LG F F +RE LP +L +V+ +
Sbjct: 223 GGWQRPAGAEKV-----VLVSLGSAFTKQPAF-YRECVRAFGNLPGWHLVLQIGRKVTPA 276
Query: 336 RQGK------VVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFIN 389
G+ V W PQL +L+ ++TH G + E + + ++ P A DQF N
Sbjct: 277 ELGELPDNVEVHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
Query: 390 CAYIVKMWKIGIRVNGFGKRDIEDGLKK----LKEDSEMKHRLMNLYMRTMGDDGAR 442
+ +G+ + D L++ L +D E+ RL + + G R
Sbjct: 335 ADM---LQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTR 388
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 343 WAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM 396
W PQL +L + ++TH G STMEA+ + ++ P +Q +N IV++
Sbjct: 312 WVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 343 WAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF 387
W PQ +L H V + H G +T+ A+ +G L +P AGD F
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47
KK+N IL+V G T KLA + RG +P +I +
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47
KK+N IL+V G T KLA + RG +P +I +
Sbjct: 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,292,932
Number of Sequences: 62578
Number of extensions: 656821
Number of successful extensions: 1331
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 18
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)