Query 011687
Match_columns 479
No_of_seqs 122 out of 1273
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 2.4E-64 5.1E-69 504.4 47.0 442 9-457 5-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.3E-61 2.8E-66 483.2 45.9 430 9-458 6-450 (451)
3 PLN02555 limonoid glucosyltran 100.0 2.2E-60 4.7E-65 476.0 45.3 434 9-459 6-470 (480)
4 PLN02207 UDP-glycosyltransfera 100.0 3.1E-60 6.8E-65 472.7 44.2 435 8-459 1-466 (468)
5 PLN02210 UDP-glucosyl transfer 100.0 2.8E-60 6.1E-65 475.5 44.1 426 9-457 7-454 (456)
6 PLN02173 UDP-glucosyl transfer 100.0 3.4E-60 7.5E-65 470.7 43.8 419 10-457 5-447 (449)
7 PLN02152 indole-3-acetate beta 100.0 9.8E-60 2.1E-64 468.2 43.1 421 9-456 2-454 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.6E-59 5.7E-64 469.8 43.8 439 6-459 5-472 (477)
9 PLN02670 transferase, transfer 100.0 1.9E-59 4.1E-64 467.5 42.5 434 7-460 3-467 (472)
10 PLN02448 UDP-glycosyltransfera 100.0 4.1E-59 9E-64 470.2 42.9 430 9-458 9-457 (459)
11 PLN02992 coniferyl-alcohol glu 100.0 8.9E-59 1.9E-63 463.1 43.2 427 10-458 5-469 (481)
12 PLN02554 UDP-glycosyltransfera 100.0 8E-59 1.7E-63 469.8 42.1 432 10-460 2-480 (481)
13 PLN03004 UDP-glycosyltransfera 100.0 9.8E-59 2.1E-63 460.6 41.3 422 9-447 2-450 (451)
14 PLN00164 glucosyltransferase; 100.0 4.1E-58 8.8E-63 462.8 43.1 434 9-460 2-475 (480)
15 PLN02167 UDP-glycosyltransfera 100.0 1.7E-57 3.7E-62 459.4 41.2 436 9-459 2-473 (475)
16 PLN02208 glycosyltransferase f 100.0 1.9E-57 4.1E-62 452.1 40.8 406 10-458 4-439 (442)
17 PLN03015 UDP-glucosyl transfer 100.0 4.2E-57 9.2E-62 448.4 43.0 427 10-456 3-466 (470)
18 PLN03007 UDP-glucosyltransfera 100.0 3.3E-57 7.2E-62 458.6 43.0 429 10-458 5-480 (482)
19 PLN02764 glycosyltransferase f 100.0 1.1E-56 2.4E-61 444.1 42.4 412 9-460 4-447 (453)
20 PLN02534 UDP-glycosyltransfera 100.0 1.4E-56 3.1E-61 449.0 42.1 427 10-457 8-485 (491)
21 PLN00414 glycosyltransferase f 100.0 4.4E-56 9.5E-61 442.9 42.3 406 10-459 4-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.7E-55 5.8E-60 445.2 31.2 427 11-477 21-483 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.9E-56 8.5E-61 459.1 2.8 423 12-475 2-457 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.2E-42 2.6E-47 347.6 32.9 359 16-438 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.3E-42 2.8E-47 348.9 29.5 360 11-437 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.1E-42 2.4E-47 359.0 19.9 425 10-472 5-466 (496)
27 COG1819 Glycosyl transferases, 100.0 8.6E-41 1.9E-45 330.5 22.6 367 10-438 1-385 (406)
28 PRK12446 undecaprenyldiphospho 100.0 1.2E-25 2.5E-30 219.9 29.9 315 11-428 2-333 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-24 4.1E-29 210.3 25.2 304 11-418 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-22 2.3E-27 197.6 22.1 305 12-425 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.8E-21 6E-26 186.8 28.3 338 11-459 1-354 (357)
32 PRK00726 murG undecaprenyldiph 99.9 1.4E-19 3E-24 179.0 28.2 322 11-437 2-340 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 5.3E-18 1.2E-22 167.2 26.7 322 12-435 1-338 (350)
34 COG4671 Predicted glycosyl tra 99.8 1.2E-16 2.6E-21 147.1 20.4 340 7-424 6-368 (400)
35 TIGR01133 murG undecaprenyldip 99.8 4E-16 8.7E-21 153.7 25.9 320 11-435 1-335 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.7 1.4E-16 2.9E-21 158.2 20.8 343 11-452 6-382 (385)
37 PRK13609 diacylglycerol glucos 99.7 7.1E-15 1.5E-19 146.6 23.0 149 277-435 200-352 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 6E-15 1.3E-19 139.8 19.5 106 279-392 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 2E-13 4.4E-18 136.2 22.4 324 10-432 1-352 (380)
40 PRK13608 diacylglycerol glucos 99.6 2.6E-13 5.7E-18 135.5 21.4 174 277-464 200-377 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.1E-15 2.3E-20 133.9 -1.5 139 281-426 1-149 (167)
42 PLN02605 monogalactosyldiacylg 99.5 2.1E-11 4.5E-16 121.6 27.6 95 336-435 265-362 (382)
43 TIGR03492 conserved hypothetic 99.5 1.1E-11 2.3E-16 123.4 24.8 329 21-429 7-372 (396)
44 PF03033 Glyco_transf_28: Glyc 99.4 7.4E-14 1.6E-18 118.4 2.9 121 13-138 1-131 (139)
45 cd03814 GT1_like_2 This family 99.4 5.3E-10 1.1E-14 110.1 30.6 143 279-436 196-347 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 6.1E-10 1.3E-14 114.1 31.0 140 280-432 263-411 (465)
47 cd03808 GT1_cap1E_like This fa 99.3 4.2E-09 9.2E-14 103.0 32.0 328 12-430 1-338 (359)
48 cd03823 GT1_ExpE7_like This fa 99.3 2.8E-09 6.1E-14 104.6 28.3 140 278-431 189-339 (359)
49 cd04962 GT1_like_5 This family 99.3 4.9E-09 1.1E-13 104.1 29.4 141 279-430 196-345 (371)
50 cd03800 GT1_Sucrose_synthase T 99.3 1.3E-08 2.8E-13 101.9 31.2 87 336-429 283-376 (398)
51 cd03818 GT1_ExpC_like This fam 99.2 2.4E-08 5.3E-13 100.2 31.4 86 336-428 281-373 (396)
52 cd03794 GT1_wbuB_like This fam 99.2 1.1E-08 2.3E-13 101.5 28.2 349 12-433 1-377 (394)
53 cd03817 GT1_UGDG_like This fam 99.2 1.4E-08 3.1E-13 100.0 28.4 82 336-425 259-347 (374)
54 cd03816 GT1_ALG1_like This fam 99.2 2.7E-08 6E-13 100.3 30.5 83 337-428 295-391 (415)
55 COG3980 spsG Spore coat polysa 99.2 9.3E-10 2E-14 99.1 17.4 151 278-437 157-309 (318)
56 cd03801 GT1_YqgM_like This fam 99.2 2.2E-08 4.7E-13 98.1 28.8 90 336-432 256-352 (374)
57 PRK10307 putative glycosyl tra 99.1 3.5E-07 7.7E-12 92.3 34.9 142 278-430 227-382 (412)
58 TIGR03449 mycothiol_MshA UDP-N 99.1 1.2E-07 2.6E-12 95.4 30.9 339 20-431 19-378 (405)
59 cd03795 GT1_like_4 This family 99.1 5.8E-08 1.3E-12 95.6 27.7 141 279-430 190-341 (357)
60 TIGR00236 wecB UDP-N-acetylglu 99.1 5.3E-09 1.1E-13 103.8 20.2 139 279-430 197-343 (365)
61 cd03820 GT1_amsD_like This fam 99.1 7.3E-08 1.6E-12 93.7 27.5 94 336-436 235-334 (348)
62 cd03825 GT1_wcfI_like This fam 99.1 1.3E-07 2.8E-12 93.5 29.3 85 336-427 244-336 (365)
63 PF04007 DUF354: Protein of un 99.1 2.8E-08 6.1E-13 95.4 23.1 301 11-419 1-308 (335)
64 cd03798 GT1_wlbH_like This fam 99.1 1.7E-07 3.6E-12 92.2 29.4 82 336-424 259-347 (377)
65 cd03796 GT1_PIG-A_like This fa 99.1 1.4E-07 3.1E-12 94.7 28.6 169 279-461 192-370 (398)
66 PRK05749 3-deoxy-D-manno-octul 99.1 1.2E-07 2.5E-12 96.2 26.5 94 337-435 303-402 (425)
67 cd03805 GT1_ALG2_like This fam 99.0 2.9E-07 6.2E-12 92.2 28.7 84 336-427 280-370 (392)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 8.9E-09 1.9E-13 102.0 17.2 138 278-427 197-343 (363)
69 cd03821 GT1_Bme6_like This fam 99.0 7.1E-07 1.5E-11 87.8 30.5 145 278-435 201-359 (375)
70 cd03822 GT1_ecORF704_like This 99.0 3.6E-07 7.7E-12 90.1 26.9 86 336-429 247-342 (366)
71 cd03819 GT1_WavL_like This fam 98.9 1.4E-06 3.1E-11 85.7 28.8 143 278-428 183-338 (355)
72 TIGR02468 sucrsPsyn_pln sucros 98.9 2.1E-06 4.7E-11 92.8 31.6 402 9-460 168-672 (1050)
73 cd03811 GT1_WabH_like This fam 98.9 7.1E-07 1.5E-11 86.9 25.7 143 278-430 187-341 (353)
74 cd05844 GT1_like_7 Glycosyltra 98.9 1.1E-06 2.5E-11 86.9 26.7 86 336-428 245-343 (367)
75 cd03812 GT1_CapH_like This fam 98.9 1.5E-06 3.3E-11 85.6 25.9 145 278-431 190-341 (358)
76 PRK09922 UDP-D-galactose:(gluc 98.9 5.7E-07 1.2E-11 89.0 22.9 137 280-424 180-327 (359)
77 cd03802 GT1_AviGT4_like This f 98.9 1E-06 2.2E-11 86.0 24.0 130 281-421 172-308 (335)
78 cd03807 GT1_WbnK_like This fam 98.9 3.8E-06 8.2E-11 82.3 28.1 81 336-425 251-336 (365)
79 cd03799 GT1_amsK_like This is 98.8 1.6E-06 3.5E-11 85.2 25.2 84 336-426 236-332 (355)
80 cd04951 GT1_WbdM_like This fam 98.8 8.8E-07 1.9E-11 87.3 23.0 142 278-435 186-341 (360)
81 TIGR02149 glgA_Coryne glycogen 98.8 1E-05 2.2E-10 80.8 30.7 140 279-428 200-359 (388)
82 TIGR02472 sucr_P_syn_N sucrose 98.8 1.9E-05 4.1E-10 80.4 32.2 139 280-428 248-413 (439)
83 TIGR03088 stp2 sugar transfera 98.8 1.2E-05 2.6E-10 80.0 30.2 84 336-426 255-343 (374)
84 TIGR02470 sucr_synth sucrose s 98.8 4.2E-05 9E-10 81.2 33.1 88 336-430 619-722 (784)
85 cd04955 GT1_like_6 This family 98.7 7.7E-06 1.7E-10 80.7 26.5 134 282-429 195-338 (363)
86 cd03809 GT1_mtfB_like This fam 98.7 3.5E-06 7.5E-11 82.9 23.0 90 336-434 253-349 (365)
87 PRK15427 colanic acid biosynth 98.7 2E-05 4.3E-10 79.3 28.0 138 279-427 221-377 (406)
88 PLN02275 transferase, transfer 98.7 1.8E-05 3.9E-10 78.6 26.8 75 336-419 286-371 (371)
89 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 7.2E-06 1.6E-10 81.0 22.3 136 278-426 200-343 (365)
90 PF02684 LpxB: Lipid-A-disacch 98.6 6.1E-06 1.3E-10 80.6 20.6 189 241-443 152-362 (373)
91 PRK14089 ipid-A-disaccharide s 98.6 7.7E-06 1.7E-10 79.4 21.0 147 279-436 167-333 (347)
92 PLN00142 sucrose synthase 98.6 4.3E-05 9.2E-10 81.2 26.6 89 336-431 642-746 (815)
93 COG0381 WecB UDP-N-acetylgluco 98.5 7.4E-06 1.6E-10 78.5 18.0 142 277-431 202-351 (383)
94 cd03792 GT1_Trehalose_phosphor 98.5 4.5E-05 9.9E-10 75.8 24.7 88 336-432 252-348 (372)
95 PRK15179 Vi polysaccharide bio 98.5 0.00023 5E-09 75.5 29.7 143 280-432 517-674 (694)
96 PRK00654 glgA glycogen synthas 98.5 0.00012 2.6E-09 75.1 26.4 129 279-420 281-427 (466)
97 TIGR03087 stp1 sugar transfera 98.5 7.9E-05 1.7E-09 74.8 24.4 85 336-429 280-370 (397)
98 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.00055 1.2E-08 66.4 27.9 323 13-437 51-402 (419)
99 PLN02846 digalactosyldiacylgly 98.4 0.0004 8.6E-09 70.0 26.8 125 282-422 230-364 (462)
100 KOG3349 Predicted glycosyltran 98.4 2.7E-06 5.9E-11 69.4 9.1 116 280-403 4-132 (170)
101 PRK01021 lpxB lipid-A-disaccha 98.4 0.00011 2.4E-09 75.2 22.8 330 11-437 227-587 (608)
102 PRK15484 lipopolysaccharide 1, 98.4 0.00074 1.6E-08 67.3 28.6 83 336-425 257-348 (380)
103 TIGR02095 glgA glycogen/starch 98.3 0.00051 1.1E-08 70.6 25.7 137 279-427 290-447 (473)
104 cd03804 GT1_wbaZ_like This fam 98.2 0.00012 2.5E-09 72.2 19.7 135 282-432 197-338 (351)
105 PF02350 Epimerase_2: UDP-N-ac 98.2 2E-05 4.3E-10 77.1 12.8 141 277-429 178-326 (346)
106 cd03806 GT1_ALG11_like This fa 98.2 0.001 2.2E-08 67.2 25.2 80 336-423 305-394 (419)
107 PLN02316 synthase/transferase 98.2 0.0058 1.3E-07 67.0 31.8 132 280-421 840-998 (1036)
108 cd03791 GT1_Glycogen_synthase_ 98.1 0.0017 3.7E-08 66.9 26.2 79 336-420 351-441 (476)
109 PRK10017 colanic acid biosynth 98.1 0.0099 2.1E-07 59.7 30.5 173 270-456 225-422 (426)
110 PF00534 Glycos_transf_1: Glyc 98.1 4.4E-05 9.6E-10 66.7 12.3 146 277-432 12-169 (172)
111 PLN02949 transferase, transfer 98.0 0.0079 1.7E-07 61.4 28.3 84 335-425 334-427 (463)
112 cd03813 GT1_like_3 This family 98.0 0.0059 1.3E-07 62.8 26.8 143 279-431 292-452 (475)
113 cd04950 GT1_like_1 Glycosyltra 98.0 0.011 2.4E-07 58.7 27.3 77 336-421 254-340 (373)
114 COG5017 Uncharacterized conser 97.9 0.00025 5.5E-09 57.0 11.0 110 282-405 2-123 (161)
115 PF13844 Glyco_transf_41: Glyc 97.9 0.00041 8.9E-09 69.4 15.1 171 277-460 282-464 (468)
116 PRK10125 putative glycosyl tra 97.8 0.021 4.5E-07 57.4 26.9 115 282-416 243-366 (405)
117 COG0763 LpxB Lipid A disacchar 97.8 0.0026 5.7E-08 61.2 18.0 196 241-456 155-379 (381)
118 PRK15490 Vi polysaccharide bio 97.7 0.014 3E-07 59.8 22.5 73 336-415 455-532 (578)
119 PLN02501 digalactosyldiacylgly 97.7 0.031 6.8E-07 58.4 25.2 119 294-425 557-685 (794)
120 cd04946 GT1_AmsK_like This fam 97.6 0.0014 3E-08 66.0 15.0 139 279-427 229-383 (407)
121 PRK14099 glycogen synthase; Pr 97.6 0.082 1.8E-06 54.4 26.9 113 336-460 350-480 (485)
122 COG1817 Uncharacterized protei 97.5 0.031 6.8E-07 52.1 19.7 104 19-137 8-113 (346)
123 PF13692 Glyco_trans_1_4: Glyc 97.4 0.00082 1.8E-08 56.0 7.8 128 281-421 3-135 (135)
124 cd04949 GT1_gtfA_like This fam 97.3 0.0012 2.6E-08 65.4 10.1 87 336-426 261-350 (372)
125 cd01635 Glycosyltransferase_GT 97.0 0.069 1.5E-06 48.1 17.4 48 336-385 161-216 (229)
126 PF13477 Glyco_trans_4_2: Glyc 96.8 0.012 2.7E-07 49.1 10.1 101 12-134 1-105 (139)
127 COG3914 Spy Predicted O-linked 96.7 0.02 4.4E-07 57.7 12.1 137 277-419 427-576 (620)
128 PF06258 Mito_fiss_Elm1: Mitoc 96.7 0.33 7.1E-06 46.7 20.1 58 345-405 221-282 (311)
129 TIGR02918 accessory Sec system 96.7 0.038 8.2E-07 57.0 14.3 130 280-421 319-467 (500)
130 PRK09814 beta-1,6-galactofuran 96.7 0.011 2.5E-07 57.7 9.9 95 336-437 207-318 (333)
131 COG3660 Predicted nucleoside-d 96.4 0.31 6.7E-06 44.5 16.3 35 344-380 236-271 (329)
132 PHA01633 putative glycosyl tra 96.4 0.029 6.3E-07 54.4 10.7 82 336-419 201-305 (335)
133 TIGR02193 heptsyl_trn_I lipopo 96.3 0.17 3.7E-06 49.0 15.4 129 278-419 178-319 (319)
134 KOG4626 O-linked N-acetylgluco 95.9 0.069 1.5E-06 54.3 10.7 144 277-424 756-907 (966)
135 PRK14098 glycogen synthase; Pr 95.9 0.1 2.2E-06 53.9 12.4 133 279-419 306-449 (489)
136 PRK10916 ADP-heptose:LPS hepto 95.6 2.1 4.6E-05 42.0 20.1 103 11-133 1-106 (348)
137 PF13579 Glyco_trans_4_4: Glyc 95.5 0.028 6.1E-07 47.6 5.5 95 25-135 5-103 (160)
138 PHA01630 putative group 1 glyc 95.5 0.55 1.2E-05 45.8 15.0 91 342-435 196-311 (331)
139 PF06722 DUF1205: Protein of u 95.3 0.024 5.3E-07 44.0 3.8 51 269-320 30-85 (97)
140 PF13439 Glyco_transf_4: Glyco 94.6 0.52 1.1E-05 40.5 11.3 101 19-138 10-111 (177)
141 PF12000 Glyco_trans_4_3: Gkyc 94.6 0.32 6.9E-06 42.1 9.3 91 36-134 1-94 (171)
142 PF13524 Glyco_trans_1_2: Glyc 94.3 0.34 7.4E-06 37.1 8.2 63 361-431 9-72 (92)
143 TIGR02195 heptsyl_trn_II lipop 94.2 3.1 6.8E-05 40.5 16.7 102 12-133 1-105 (334)
144 PLN02939 transferase, transfer 93.9 1.2 2.6E-05 48.9 13.8 168 280-460 779-968 (977)
145 COG0859 RfaF ADP-heptose:LPS h 93.2 3.1 6.7E-05 40.6 14.6 105 10-133 1-107 (334)
146 COG1618 Predicted nucleotide k 93.2 0.67 1.5E-05 39.3 8.3 57 10-71 5-61 (179)
147 COG0438 RfaG Glycosyltransfera 92.4 9.2 0.0002 36.2 16.9 88 336-430 257-351 (381)
148 PF01975 SurE: Survival protei 92.3 0.51 1.1E-05 42.0 7.1 42 11-53 1-42 (196)
149 COG4370 Uncharacterized protei 91.5 0.78 1.7E-05 42.8 7.3 99 336-437 294-396 (412)
150 PF05159 Capsule_synth: Capsul 90.3 2.1 4.6E-05 40.2 9.7 84 296-382 141-226 (269)
151 PF04464 Glyphos_transf: CDP-G 90.1 0.79 1.7E-05 45.4 6.8 109 336-451 252-366 (369)
152 TIGR03713 acc_sec_asp1 accesso 89.9 2 4.3E-05 44.6 9.7 76 336-423 409-490 (519)
153 PF08660 Alg14: Oligosaccharid 89.4 1.2 2.7E-05 38.6 6.5 112 16-134 3-127 (170)
154 PF02951 GSH-S_N: Prokaryotic 88.5 0.7 1.5E-05 37.4 4.1 38 11-48 1-41 (119)
155 COG0003 ArsA Predicted ATPase 88.2 3.2 7E-05 40.0 9.1 41 11-51 2-43 (322)
156 TIGR02919 accessory Sec system 88.2 1.7 3.8E-05 43.9 7.6 131 295-437 291-428 (438)
157 TIGR00715 precor6x_red precorr 87.7 2.4 5.1E-05 39.5 7.7 90 11-134 1-98 (256)
158 TIGR02400 trehalose_OtsA alpha 87.6 4.6 9.9E-05 41.3 10.4 100 342-456 342-454 (456)
159 PRK14501 putative bifunctional 86.2 5.3 0.00012 43.5 10.6 110 340-460 346-464 (726)
160 PRK10422 lipopolysaccharide co 86.0 6.6 0.00014 38.6 10.3 107 9-133 4-113 (352)
161 PLN03063 alpha,alpha-trehalose 85.5 13 0.00029 40.8 13.1 99 348-460 371-479 (797)
162 COG0496 SurE Predicted acid ph 84.9 10 0.00022 35.0 10.0 41 11-53 1-41 (252)
163 PF02441 Flavoprotein: Flavopr 84.7 0.91 2E-05 37.4 3.0 44 11-55 1-44 (129)
164 PRK02261 methylaspartate mutas 84.6 2 4.4E-05 35.8 5.0 41 8-48 1-41 (137)
165 PF02374 ArsA_ATPase: Anion-tr 82.9 1.6 3.5E-05 41.9 4.3 40 11-50 1-41 (305)
166 TIGR00708 cobA cob(I)alamin ad 82.8 8.5 0.00018 33.4 8.3 96 11-117 6-107 (173)
167 PF00731 AIRC: AIR carboxylase 82.3 14 0.0003 31.3 9.0 136 280-437 1-148 (150)
168 COG1703 ArgK Putative periplas 82.0 17 0.00037 34.4 10.3 41 7-47 48-88 (323)
169 PRK10964 ADP-heptose:LPS hepto 81.6 7.7 0.00017 37.5 8.6 44 11-54 1-46 (322)
170 PRK13982 bifunctional SbtC-lik 80.8 4.9 0.00011 40.9 6.9 40 9-48 255-306 (475)
171 PRK02797 4-alpha-L-fucosyltran 80.2 43 0.00094 32.0 12.4 76 336-416 206-289 (322)
172 PRK08057 cobalt-precorrin-6x r 80.0 10 0.00022 35.2 8.3 90 11-134 3-98 (248)
173 PRK08305 spoVFB dipicolinate s 79.6 2.5 5.4E-05 37.5 4.0 40 10-49 5-44 (196)
174 COG1797 CobB Cobyrinic acid a, 79.3 9.5 0.00021 38.0 8.1 107 12-138 2-121 (451)
175 cd00561 CobA_CobO_BtuR ATP:cor 78.3 27 0.00059 29.9 9.7 96 12-117 4-105 (159)
176 PRK13932 stationary phase surv 78.3 53 0.0011 30.6 12.3 41 9-51 4-44 (257)
177 COG2894 MinD Septum formation 78.1 10 0.00022 34.1 7.2 37 11-47 2-40 (272)
178 smart00851 MGS MGS-like domain 77.6 13 0.00028 28.2 7.0 79 27-132 2-89 (90)
179 cd02067 B12-binding B12 bindin 76.5 4.1 8.9E-05 32.8 4.2 36 12-47 1-36 (119)
180 TIGR00087 surE 5'/3'-nucleotid 76.4 18 0.00038 33.5 8.7 41 11-53 1-41 (244)
181 KOG2941 Beta-1,4-mannosyltrans 76.3 37 0.0008 32.8 10.7 125 9-140 11-141 (444)
182 cd07039 TPP_PYR_POX Pyrimidine 76.1 22 0.00048 30.5 8.9 27 356-382 65-97 (164)
183 cd03788 GT1_TPS Trehalose-6-Ph 75.2 10 0.00022 38.9 7.5 85 342-436 347-444 (460)
184 PRK13933 stationary phase surv 75.2 59 0.0013 30.2 11.8 39 11-51 1-39 (253)
185 PF12146 Hydrolase_4: Putative 74.7 6.5 0.00014 29.1 4.5 37 10-46 15-51 (79)
186 PRK05986 cob(I)alamin adenolsy 73.1 36 0.00078 30.1 9.3 102 9-117 21-125 (191)
187 TIGR02201 heptsyl_trn_III lipo 72.9 27 0.00058 34.1 9.7 105 12-133 1-108 (344)
188 cd02070 corrinoid_protein_B12- 72.8 14 0.0003 33.1 6.9 38 10-47 82-119 (201)
189 PF04127 DFP: DNA / pantothena 72.2 2.5 5.5E-05 37.2 2.0 53 10-69 3-67 (185)
190 PF02571 CbiJ: Precorrin-6x re 72.1 11 0.00023 35.0 6.2 93 11-134 1-99 (249)
191 PF07015 VirC1: VirC1 protein; 72.0 55 0.0012 29.9 10.5 44 11-54 2-46 (231)
192 COG2910 Putative NADH-flavin r 71.9 4.2 9.1E-05 35.4 3.1 34 11-48 1-34 (211)
193 TIGR00347 bioD dethiobiotin sy 71.5 21 0.00045 30.5 7.7 27 18-44 6-32 (166)
194 COG0552 FtsY Signal recognitio 71.3 55 0.0012 31.6 10.7 127 9-135 138-318 (340)
195 TIGR02398 gluc_glyc_Psyn gluco 71.0 52 0.0011 33.9 11.3 91 338-437 364-466 (487)
196 PRK06732 phosphopantothenate-- 70.8 7.2 0.00016 35.7 4.7 37 11-47 1-49 (229)
197 PRK10867 signal recognition pa 69.8 26 0.00057 35.4 8.8 43 10-52 100-143 (433)
198 PRK05647 purN phosphoribosylgl 69.8 24 0.00052 31.5 7.8 82 11-116 2-89 (200)
199 cd03793 GT1_Glycogen_synthase_ 68.9 13 0.00029 38.7 6.6 74 345-421 467-552 (590)
200 PF09314 DUF1972: Domain of un 68.6 83 0.0018 27.7 11.7 56 11-69 2-62 (185)
201 PRK00346 surE 5'(3')-nucleotid 68.3 81 0.0018 29.3 11.0 40 11-52 1-40 (250)
202 cd03789 GT1_LPS_heptosyltransf 68.2 33 0.00071 32.2 8.9 102 12-133 1-105 (279)
203 TIGR00460 fmt methionyl-tRNA f 67.7 22 0.00047 34.3 7.6 31 11-46 1-31 (313)
204 PF07429 Glyco_transf_56: 4-al 67.7 85 0.0018 30.5 11.2 79 336-419 245-331 (360)
205 PRK01077 cobyrinic acid a,c-di 67.7 18 0.00039 37.0 7.3 108 11-138 4-124 (451)
206 PRK07313 phosphopantothenoylcy 67.6 5.8 0.00013 34.8 3.3 43 11-54 2-44 (182)
207 COG2109 BtuR ATP:corrinoid ade 66.9 76 0.0017 27.9 9.7 100 11-119 29-134 (198)
208 TIGR02852 spore_dpaB dipicolin 66.8 6.3 0.00014 34.7 3.3 39 11-49 1-39 (187)
209 PRK13789 phosphoribosylamine-- 66.5 16 0.00035 37.0 6.6 33 10-47 4-36 (426)
210 PF10093 DUF2331: Uncharacteri 66.4 12 0.00026 36.7 5.4 90 291-383 190-293 (374)
211 TIGR01425 SRP54_euk signal rec 66.0 39 0.00084 34.1 9.0 41 10-50 100-140 (429)
212 cd01980 Chlide_reductase_Y Chl 65.8 18 0.00039 36.5 6.9 93 12-135 282-375 (416)
213 PRK11199 tyrA bifunctional cho 65.5 32 0.0007 34.1 8.5 33 10-47 98-131 (374)
214 TIGR02015 BchY chlorophyllide 65.2 43 0.00093 33.9 9.4 91 11-135 286-380 (422)
215 cd00550 ArsA_ATPase Oxyanion-t 65.0 25 0.00055 32.7 7.2 36 13-48 3-38 (254)
216 PF02142 MGS: MGS-like domain 63.9 6.3 0.00014 30.4 2.5 83 27-132 2-94 (95)
217 cd02037 MRP-like MRP (Multiple 63.3 27 0.00059 30.0 6.7 36 13-48 2-38 (169)
218 PF04413 Glycos_transf_N: 3-De 63.3 16 0.00035 32.2 5.3 93 18-135 28-125 (186)
219 COG0541 Ffh Signal recognition 63.0 41 0.00089 33.7 8.3 60 9-68 99-161 (451)
220 PF02310 B12-binding: B12 bind 62.8 15 0.00032 29.5 4.7 35 12-46 2-36 (121)
221 PLN03064 alpha,alpha-trehalose 62.2 1.7E+02 0.0037 32.9 13.8 105 342-460 446-563 (934)
222 cd01965 Nitrogenase_MoFe_beta_ 62.0 56 0.0012 33.1 9.7 25 107-134 371-395 (428)
223 PRK13935 stationary phase surv 61.9 1.4E+02 0.003 27.8 11.7 39 11-51 1-39 (253)
224 PRK10964 ADP-heptose:LPS hepto 61.6 22 0.00047 34.3 6.4 119 292-419 193-320 (322)
225 TIGR00959 ffh signal recogniti 61.3 41 0.00088 34.0 8.3 43 10-52 99-142 (428)
226 PRK11889 flhF flagellar biosyn 61.3 50 0.0011 33.0 8.6 41 10-50 241-281 (436)
227 PRK09620 hypothetical protein; 61.3 10 0.00022 34.7 3.7 39 10-48 3-53 (229)
228 cd03789 GT1_LPS_heptosyltransf 61.2 33 0.00072 32.2 7.5 96 279-380 121-223 (279)
229 PF00551 Formyl_trans_N: Formy 61.1 11 0.00024 33.0 3.9 33 11-46 1-35 (181)
230 cd01423 MGS_CPS_I_III Methylgl 61.1 47 0.001 26.5 7.3 94 15-133 4-106 (116)
231 PRK05632 phosphate acetyltrans 61.0 1.1E+02 0.0024 33.1 12.2 100 12-138 4-116 (684)
232 PRK06988 putative formyltransf 60.8 39 0.00084 32.6 7.8 32 11-47 3-34 (312)
233 cd00532 MGS-like MGS-like doma 60.7 35 0.00077 27.1 6.4 86 23-134 10-105 (112)
234 cd01974 Nitrogenase_MoFe_beta 60.6 57 0.0012 33.1 9.4 25 107-134 377-401 (435)
235 TIGR02195 heptsyl_trn_II lipop 60.5 51 0.0011 31.9 8.9 97 11-134 175-276 (334)
236 PRK05920 aromatic acid decarbo 59.8 9.9 0.00022 34.0 3.3 43 10-53 3-45 (204)
237 PRK02155 ppnK NAD(+)/NADH kina 59.6 53 0.0011 31.3 8.4 53 352-421 63-119 (291)
238 TIGR01285 nifN nitrogenase mol 59.4 51 0.0011 33.4 8.8 87 10-134 311-397 (432)
239 PLN02470 acetolactate synthase 59.2 48 0.001 35.1 9.0 80 298-381 16-109 (585)
240 cd07037 TPP_PYR_MenD Pyrimidin 58.9 18 0.00039 31.1 4.7 29 352-382 60-94 (162)
241 KOG1111 N-acetylglucosaminyltr 58.7 92 0.002 30.4 9.5 86 292-380 207-301 (426)
242 TIGR02113 coaC_strep phosphopa 58.4 10 0.00022 33.1 3.1 42 12-54 2-43 (177)
243 PRK00090 bioD dithiobiotin syn 58.2 55 0.0012 29.5 8.1 34 13-46 2-36 (222)
244 cd01425 RPS2 Ribosomal protein 57.7 16 0.00034 32.5 4.3 113 23-138 41-160 (193)
245 cd03114 ArgK-like The function 57.6 1.1E+02 0.0025 25.6 9.9 35 13-47 2-36 (148)
246 PF01075 Glyco_transf_9: Glyco 57.6 19 0.00041 33.1 5.0 97 277-380 103-208 (247)
247 COG0041 PurE Phosphoribosylcar 57.3 1.2E+02 0.0026 25.7 11.7 136 281-438 4-151 (162)
248 PRK06029 3-octaprenyl-4-hydrox 57.3 11 0.00024 33.2 3.1 43 11-54 2-45 (185)
249 cd07038 TPP_PYR_PDC_IPDC_like 57.2 26 0.00057 30.0 5.5 27 356-382 61-93 (162)
250 cd01424 MGS_CPS_II Methylglyox 57.0 56 0.0012 25.7 7.0 85 22-134 10-101 (110)
251 COG1435 Tdk Thymidine kinase [ 56.3 88 0.0019 27.8 8.4 101 13-134 7-116 (201)
252 PRK14098 glycogen synthase; Pr 56.1 19 0.00042 37.1 5.2 39 10-48 5-49 (489)
253 PF02844 GARS_N: Phosphoribosy 55.6 39 0.00084 26.4 5.5 87 11-133 1-91 (100)
254 KOG0853 Glycosyltransferase [C 55.5 8.6 0.00019 39.1 2.4 61 366-432 381-444 (495)
255 PF02776 TPP_enzyme_N: Thiamin 55.0 56 0.0012 28.2 7.3 64 352-419 64-144 (172)
256 PRK10422 lipopolysaccharide co 54.9 43 0.00093 32.8 7.3 98 278-380 182-287 (352)
257 TIGR00639 PurN phosphoribosylg 54.7 68 0.0015 28.3 7.7 82 11-117 1-89 (190)
258 PF06506 PrpR_N: Propionate ca 54.7 12 0.00026 32.6 3.0 66 353-419 33-122 (176)
259 PRK00994 F420-dependent methyl 54.5 1.1E+02 0.0023 28.0 8.7 87 11-137 3-96 (277)
260 PRK12342 hypothetical protein; 54.1 23 0.00051 32.9 4.9 38 95-136 101-144 (254)
261 PRK06171 sorbitol-6-phosphate 53.9 1E+02 0.0022 28.5 9.4 42 1-47 1-42 (266)
262 PRK12726 flagellar biosynthesi 53.8 98 0.0021 30.8 9.2 42 10-51 206-247 (407)
263 TIGR00379 cobB cobyrinic acid 53.8 46 0.00099 34.0 7.4 106 13-138 2-120 (449)
264 PRK06249 2-dehydropantoate 2-r 53.6 21 0.00045 34.4 4.7 48 9-67 4-51 (313)
265 CHL00072 chlL photochlorophyll 53.3 24 0.00052 33.6 5.0 37 11-47 1-37 (290)
266 cd03115 SRP The signal recogni 52.9 1.4E+02 0.0031 25.5 9.6 39 12-50 2-40 (173)
267 cd02032 Bchl_like This family 52.7 23 0.00049 33.1 4.8 37 11-47 1-37 (267)
268 PF05693 Glycogen_syn: Glycoge 52.7 27 0.0006 36.5 5.5 89 344-435 461-566 (633)
269 TIGR01281 DPOR_bchL light-inde 52.6 23 0.0005 33.1 4.8 36 11-46 1-36 (268)
270 COG2861 Uncharacterized protei 52.3 77 0.0017 29.0 7.5 38 93-133 138-178 (250)
271 cd02071 MM_CoA_mut_B12_BD meth 52.2 25 0.00054 28.5 4.3 36 12-47 1-36 (122)
272 cd07035 TPP_PYR_POX_like Pyrim 51.3 89 0.0019 26.2 7.8 26 357-382 62-93 (155)
273 PRK08760 replicative DNA helic 51.2 25 0.00055 36.1 5.1 40 11-50 230-270 (476)
274 PRK01231 ppnK inorganic polyph 50.9 77 0.0017 30.3 8.0 53 352-421 62-118 (295)
275 PRK06731 flhF flagellar biosyn 50.6 1.3E+02 0.0028 28.4 9.2 40 10-49 75-114 (270)
276 PRK05595 replicative DNA helic 50.5 30 0.00066 35.2 5.5 39 11-49 202-241 (444)
277 PRK08506 replicative DNA helic 50.0 36 0.00077 35.0 5.9 42 11-52 193-234 (472)
278 PRK11519 tyrosine kinase; Prov 50.0 1.4E+02 0.0031 32.6 10.8 38 10-47 525-564 (719)
279 PF01210 NAD_Gly3P_dh_N: NAD-d 49.9 12 0.00027 31.8 2.2 32 12-48 1-32 (157)
280 PRK04940 hypothetical protein; 49.6 33 0.00071 30.0 4.8 31 107-137 60-91 (180)
281 PF06925 MGDG_synth: Monogalac 49.6 37 0.00081 29.2 5.3 24 23-46 1-25 (169)
282 COG0859 RfaF ADP-heptose:LPS h 49.4 61 0.0013 31.5 7.3 98 10-135 175-277 (334)
283 PRK05579 bifunctional phosphop 49.1 21 0.00045 35.8 3.9 45 9-54 5-49 (399)
284 PRK06321 replicative DNA helic 48.9 42 0.00091 34.5 6.2 41 11-51 227-268 (472)
285 COG2185 Sbm Methylmalonyl-CoA 48.8 30 0.00066 28.9 4.2 40 8-47 10-49 (143)
286 COG1484 DnaC DNA replication p 48.8 19 0.00042 33.5 3.5 45 10-54 105-149 (254)
287 TIGR00421 ubiX_pad polyprenyl 48.6 14 0.00031 32.4 2.4 40 13-53 2-41 (181)
288 PRK14077 pnk inorganic polypho 48.6 32 0.00069 32.7 5.0 56 349-421 61-120 (287)
289 TIGR03878 thermo_KaiC_2 KaiC d 48.5 65 0.0014 30.1 7.0 39 10-48 36-74 (259)
290 TIGR03600 phage_DnaB phage rep 48.4 44 0.00096 33.7 6.3 41 11-51 195-236 (421)
291 PHA02542 41 41 helicase; Provi 48.2 21 0.00046 36.6 4.0 39 11-49 191-229 (473)
292 PRK06904 replicative DNA helic 48.1 28 0.00061 35.7 4.8 42 11-52 222-264 (472)
293 PRK06027 purU formyltetrahydro 47.9 1.1E+02 0.0023 29.2 8.4 85 8-117 87-175 (286)
294 PRK06849 hypothetical protein; 47.9 33 0.00071 34.2 5.3 35 10-48 4-38 (389)
295 PRK03359 putative electron tra 47.9 33 0.00071 32.0 4.8 39 95-137 104-148 (256)
296 PRK14619 NAD(P)H-dependent gly 47.8 28 0.0006 33.5 4.6 51 9-69 3-56 (308)
297 TIGR02201 heptsyl_trn_III lipo 47.5 60 0.0013 31.6 7.0 98 278-380 180-285 (344)
298 PRK13011 formyltetrahydrofolat 47.5 1.1E+02 0.0023 29.2 8.3 101 9-134 88-193 (286)
299 TIGR02370 pyl_corrinoid methyl 47.4 38 0.00083 30.1 5.1 39 10-48 84-122 (197)
300 PF14626 RNase_Zc3h12a_2: Zc3h 47.2 25 0.00054 28.1 3.3 32 24-55 9-40 (122)
301 PRK00005 fmt methionyl-tRNA fo 47.0 98 0.0021 29.7 8.2 31 11-46 1-31 (309)
302 PRK10416 signal recognition pa 46.3 98 0.0021 29.9 8.0 41 10-50 114-154 (318)
303 cd01977 Nitrogenase_VFe_alpha 46.3 84 0.0018 31.7 7.9 25 107-134 358-382 (415)
304 TIGR02700 flavo_MJ0208 archaeo 45.8 23 0.0005 32.5 3.5 43 13-55 2-46 (234)
305 PLN02939 transferase, transfer 45.8 37 0.0008 37.8 5.5 41 8-48 479-525 (977)
306 COG3140 Uncharacterized protei 45.5 93 0.002 21.0 5.2 44 421-468 10-53 (60)
307 TIGR01283 nifE nitrogenase mol 45.4 1.9E+02 0.004 29.6 10.3 90 10-134 326-419 (456)
308 COG0801 FolK 7,8-dihydro-6-hyd 45.3 46 0.00099 28.4 4.9 35 281-316 3-37 (160)
309 COG0223 Fmt Methionyl-tRNA for 45.1 31 0.00066 33.0 4.2 34 10-48 1-34 (307)
310 PRK14478 nitrogenase molybdenu 45.0 1.5E+02 0.0033 30.5 9.6 89 10-133 324-416 (475)
311 PRK08155 acetolactate synthase 45.0 1.1E+02 0.0025 32.1 9.0 79 297-381 15-109 (564)
312 PF00862 Sucrose_synth: Sucros 45.0 33 0.00072 35.0 4.5 112 20-137 295-433 (550)
313 PRK08006 replicative DNA helic 44.6 43 0.00094 34.4 5.6 125 11-135 225-383 (471)
314 PRK13931 stationary phase surv 44.4 1.5E+02 0.0033 27.7 8.6 26 26-51 15-43 (261)
315 PRK12921 2-dehydropantoate 2-r 44.3 24 0.00052 33.7 3.5 32 11-47 1-32 (305)
316 PRK04885 ppnK inorganic polyph 44.3 40 0.00087 31.6 4.9 52 353-421 36-93 (265)
317 COG0504 PyrG CTP synthase (UTP 44.1 2.6E+02 0.0056 28.6 10.4 41 11-51 1-44 (533)
318 PF07355 GRDB: Glycine/sarcosi 44.1 36 0.00079 32.9 4.5 40 91-134 68-117 (349)
319 TIGR03575 selen_PSTK_euk L-ser 44.0 1.8E+02 0.0039 28.4 9.4 38 13-50 2-40 (340)
320 PLN02935 Bifunctional NADH kin 43.2 42 0.0009 34.4 5.0 54 351-421 261-318 (508)
321 cd03466 Nitrogenase_NifN_2 Nit 43.2 89 0.0019 31.7 7.6 33 95-134 364-396 (429)
322 PF05728 UPF0227: Uncharacteri 42.9 40 0.00087 29.7 4.4 42 95-138 49-91 (187)
323 PRK12311 rpsB 30S ribosomal pr 42.8 44 0.00096 32.3 4.9 34 107-140 152-187 (326)
324 PF01075 Glyco_transf_9: Glyco 42.7 56 0.0012 29.9 5.7 98 10-136 105-210 (247)
325 PRK04761 ppnK inorganic polyph 42.6 50 0.0011 30.6 5.1 51 353-419 26-80 (246)
326 COG0052 RpsB Ribosomal protein 42.6 15 0.00032 33.6 1.6 35 107-141 156-192 (252)
327 PF02606 LpxK: Tetraacyldisacc 42.2 1.1E+02 0.0023 29.8 7.6 33 16-48 43-75 (326)
328 COG0287 TyrA Prephenate dehydr 41.7 1.4E+02 0.0029 28.3 8.0 36 10-50 3-38 (279)
329 TIGR01380 glut_syn glutathione 41.5 38 0.00083 32.6 4.4 39 11-49 1-42 (312)
330 PRK05784 phosphoribosylamine-- 41.4 1.2E+02 0.0027 31.2 8.3 31 11-46 1-33 (486)
331 KOG0780 Signal recognition par 41.3 1.7E+02 0.0037 29.1 8.4 44 9-52 100-143 (483)
332 PRK08125 bifunctional UDP-gluc 41.1 1.3E+02 0.0027 32.5 8.8 32 11-47 1-33 (660)
333 TIGR01862 N2-ase-Ialpha nitrog 40.7 1.2E+02 0.0025 31.0 8.0 31 97-134 381-411 (443)
334 PRK01175 phosphoribosylformylg 40.7 2.4E+02 0.0053 26.3 9.4 57 10-73 3-59 (261)
335 cd01968 Nitrogenase_NifE_I Nit 40.5 70 0.0015 32.1 6.3 32 96-134 349-380 (410)
336 TIGR00521 coaBC_dfp phosphopan 40.4 25 0.00055 35.0 3.0 44 10-54 3-46 (390)
337 TIGR00173 menD 2-succinyl-5-en 40.1 83 0.0018 31.9 6.8 27 352-380 63-95 (432)
338 PRK10037 cell division protein 39.9 49 0.0011 30.6 4.8 36 11-46 2-38 (250)
339 PF02572 CobA_CobO_BtuR: ATP:c 39.9 1.5E+02 0.0033 25.7 7.4 100 11-117 4-106 (172)
340 TIGR02699 archaeo_AfpA archaeo 39.7 29 0.00062 30.2 2.9 40 13-53 2-43 (174)
341 PRK14477 bifunctional nitrogen 39.7 2.2E+02 0.0048 32.1 10.5 93 9-136 319-415 (917)
342 PLN02948 phosphoribosylaminoim 39.6 4.9E+02 0.011 27.6 13.6 138 279-438 410-559 (577)
343 PF01372 Melittin: Melittin; 39.6 8.7 0.00019 21.0 -0.2 17 363-379 1-17 (26)
344 COG1066 Sms Predicted ATP-depe 39.3 19 0.00041 35.7 1.9 37 12-49 95-131 (456)
345 PRK07206 hypothetical protein; 39.1 99 0.0022 31.0 7.2 33 11-48 3-35 (416)
346 PRK06522 2-dehydropantoate 2-r 39.0 26 0.00057 33.3 2.9 31 11-46 1-31 (304)
347 COG2120 Uncharacterized protei 39.0 53 0.0011 30.2 4.7 39 9-47 9-47 (237)
348 PRK13010 purU formyltetrahydro 38.8 3.5E+02 0.0076 25.7 10.9 41 6-46 2-42 (289)
349 PRK07586 hypothetical protein; 38.6 1.4E+02 0.003 31.0 8.4 24 358-381 68-97 (514)
350 COG4394 Uncharacterized protei 38.4 84 0.0018 29.6 5.7 44 337-383 239-287 (370)
351 COG4088 Predicted nucleotide k 38.4 45 0.00097 29.9 3.8 38 11-48 2-39 (261)
352 TIGR01007 eps_fam capsular exo 38.1 62 0.0013 28.7 5.0 37 11-47 17-55 (204)
353 PRK02231 ppnK inorganic polyph 38.1 43 0.00094 31.5 4.0 62 346-424 36-101 (272)
354 TIGR02990 ectoine_eutA ectoine 37.8 1.5E+02 0.0032 27.3 7.4 96 24-134 105-212 (239)
355 TIGR00337 PyrG CTP synthase. C 37.5 3.3E+02 0.0072 28.3 10.4 41 11-51 1-44 (525)
356 PRK08840 replicative DNA helic 37.5 56 0.0012 33.5 5.0 125 11-135 218-376 (464)
357 PRK12475 thiamine/molybdopteri 37.4 1.4E+02 0.003 29.2 7.6 33 9-46 23-56 (338)
358 PRK01911 ppnK inorganic polyph 37.4 61 0.0013 30.9 5.0 57 348-421 60-120 (292)
359 PRK14569 D-alanyl-alanine synt 36.9 71 0.0015 30.4 5.5 38 9-46 2-43 (296)
360 TIGR03837 efp_adjacent_2 conse 36.8 84 0.0018 30.8 5.8 91 290-383 187-291 (371)
361 COG3563 KpsC Capsule polysacch 36.6 4.9E+02 0.011 26.7 11.0 86 292-381 163-251 (671)
362 cd02069 methionine_synthase_B1 36.5 68 0.0015 28.9 4.9 40 9-48 87-126 (213)
363 TIGR00665 DnaB replicative DNA 36.4 64 0.0014 32.7 5.3 42 11-52 196-238 (434)
364 COG0503 Apt Adenine/guanine ph 36.3 70 0.0015 28.0 4.8 28 107-134 53-82 (179)
365 PF08323 Glyco_transf_5: Starc 36.3 28 0.00061 32.2 2.5 27 22-48 17-43 (245)
366 PRK10353 3-methyl-adenine DNA 36.3 1.1E+02 0.0024 26.9 6.0 61 378-438 21-99 (187)
367 PRK10916 ADP-heptose:LPS hepto 36.3 1.1E+02 0.0023 30.0 6.7 98 11-134 181-286 (348)
368 PF03808 Glyco_tran_WecB: Glyc 36.3 2.8E+02 0.0061 23.9 11.4 86 211-317 49-134 (172)
369 COG0771 MurD UDP-N-acetylmuram 36.0 59 0.0013 33.0 4.8 35 9-48 6-40 (448)
370 PRK13236 nitrogenase reductase 35.9 72 0.0016 30.4 5.3 37 11-47 7-43 (296)
371 PRK05636 replicative DNA helic 35.8 57 0.0012 33.8 4.8 39 11-49 266-305 (505)
372 PF03308 ArgK: ArgK protein; 35.7 3.1E+02 0.0066 25.7 9.0 112 8-134 27-150 (266)
373 PF02571 CbiJ: Precorrin-6x re 35.6 1.3E+02 0.0028 27.9 6.7 103 27-134 118-225 (249)
374 PRK12828 short chain dehydroge 35.5 72 0.0016 28.7 5.2 34 10-47 7-40 (239)
375 PRK03378 ppnK inorganic polyph 35.3 69 0.0015 30.5 5.0 56 349-421 60-119 (292)
376 PRK07666 fabG 3-ketoacyl-(acyl 35.3 85 0.0018 28.4 5.6 40 4-47 1-40 (239)
377 PRK07236 hypothetical protein; 34.7 73 0.0016 31.6 5.4 35 8-47 4-38 (386)
378 COG2099 CobK Precorrin-6x redu 34.6 1.3E+02 0.0027 27.9 6.2 35 96-134 189-228 (257)
379 PRK03372 ppnK inorganic polyph 34.5 74 0.0016 30.5 5.1 55 350-421 70-128 (306)
380 PLN02327 CTP synthase 34.4 4E+02 0.0086 28.0 10.4 41 11-51 1-44 (557)
381 PRK13234 nifH nitrogenase redu 34.4 74 0.0016 30.3 5.1 37 11-47 5-41 (295)
382 TIGR00877 purD phosphoribosyla 34.3 1.5E+02 0.0032 29.8 7.6 33 11-48 1-33 (423)
383 PRK05380 pyrG CTP synthetase; 34.2 3.3E+02 0.0072 28.4 9.8 41 11-51 2-45 (533)
384 PRK06719 precorrin-2 dehydroge 34.1 57 0.0012 27.8 3.9 35 9-48 12-46 (157)
385 TIGR03880 KaiC_arch_3 KaiC dom 34.1 72 0.0016 28.8 4.8 43 10-52 16-58 (224)
386 PRK06276 acetolactate synthase 34.0 96 0.0021 32.9 6.4 26 356-381 65-96 (586)
387 cd01421 IMPCH Inosine monophos 33.8 78 0.0017 27.8 4.6 38 25-69 11-48 (187)
388 COG0205 PfkA 6-phosphofructoki 33.5 1.2E+02 0.0027 29.6 6.4 109 10-134 2-124 (347)
389 TIGR01917 gly_red_sel_B glycin 33.4 63 0.0014 32.2 4.4 41 91-135 64-114 (431)
390 TIGR01918 various_sel_PB selen 33.4 63 0.0014 32.2 4.4 41 91-135 64-114 (431)
391 cd03146 GAT1_Peptidase_E Type 33.4 2E+02 0.0043 25.8 7.5 45 266-313 17-64 (212)
392 PF03446 NAD_binding_2: NAD bi 33.1 32 0.00069 29.4 2.2 31 11-46 2-32 (163)
393 COG3349 Uncharacterized conser 33.0 44 0.00095 34.1 3.4 33 11-48 1-33 (485)
394 cd02040 NifH NifH gene encodes 33.0 73 0.0016 29.6 4.9 37 11-47 2-38 (270)
395 TIGR00118 acolac_lg acetolacta 32.9 1.1E+02 0.0025 32.1 6.7 27 355-381 65-97 (558)
396 PRK12825 fabG 3-ketoacyl-(acyl 32.9 82 0.0018 28.4 5.1 33 11-47 7-39 (249)
397 PRK09739 hypothetical protein; 32.9 1E+02 0.0023 27.2 5.6 36 10-45 3-41 (199)
398 cd02034 CooC The accessory pro 32.8 93 0.002 24.9 4.7 37 12-48 1-37 (116)
399 PRK08229 2-dehydropantoate 2-r 32.8 35 0.00075 33.2 2.7 33 11-48 3-35 (341)
400 KOG0081 GTPase Rab27, small G 32.7 98 0.0021 26.3 4.7 42 96-137 110-164 (219)
401 TIGR00345 arsA arsenite-activa 32.6 1.6E+02 0.0035 27.8 7.1 22 28-49 3-24 (284)
402 PRK04539 ppnK inorganic polyph 32.6 93 0.002 29.7 5.4 57 348-421 64-124 (296)
403 cd03113 CTGs CTP synthetase (C 32.4 4.1E+02 0.0089 24.6 10.6 40 12-51 1-43 (255)
404 PLN02929 NADH kinase 32.4 47 0.001 31.7 3.3 65 352-421 64-137 (301)
405 TIGR00064 ftsY signal recognit 32.3 92 0.002 29.3 5.3 40 10-49 72-111 (272)
406 PRK13869 plasmid-partitioning 32.1 78 0.0017 31.8 5.1 37 11-47 122-159 (405)
407 PRK12815 carB carbamoyl phosph 32.1 3.4E+02 0.0073 31.3 10.6 40 9-48 6-51 (1068)
408 TIGR01501 MthylAspMutase methy 32.0 89 0.0019 25.9 4.5 38 11-48 2-39 (134)
409 PRK07710 acetolactate synthase 31.8 92 0.002 32.9 5.8 26 356-381 80-111 (571)
410 PRK03708 ppnK inorganic polyph 31.7 58 0.0013 30.7 3.8 52 353-421 58-112 (277)
411 PF06564 YhjQ: YhjQ protein; 31.6 92 0.002 28.7 5.0 36 11-46 2-38 (243)
412 COG0569 TrkA K+ transport syst 31.5 57 0.0012 29.7 3.7 33 11-48 1-33 (225)
413 PRK05114 hypothetical protein; 31.3 1.6E+02 0.0035 20.2 4.7 40 420-463 9-48 (59)
414 TIGR02237 recomb_radB DNA repa 31.3 3.3E+02 0.0071 24.0 8.7 39 10-48 12-50 (209)
415 PRK08527 acetolactate synthase 31.0 1.2E+02 0.0026 31.9 6.6 27 355-381 67-99 (563)
416 PHA02519 plasmid partition pro 31.0 83 0.0018 31.4 5.0 35 11-45 107-142 (387)
417 PHA02518 ParA-like protein; Pr 31.0 95 0.0021 27.5 5.1 37 12-48 2-39 (211)
418 PRK06395 phosphoribosylamine-- 30.9 2.1E+02 0.0044 29.1 7.9 31 11-46 3-33 (435)
419 PRK07773 replicative DNA helic 30.8 92 0.002 34.9 5.8 123 11-136 218-375 (886)
420 TIGR01012 Sa_S2_E_A ribosomal 30.8 56 0.0012 29.0 3.3 32 107-138 108-141 (196)
421 PRK06882 acetolactate synthase 30.8 2.1E+02 0.0045 30.3 8.3 27 355-381 68-100 (574)
422 PF04244 DPRP: Deoxyribodipyri 30.7 48 0.001 30.2 3.0 26 23-48 47-72 (224)
423 PF10933 DUF2827: Protein of u 30.6 3.3E+02 0.0071 26.7 8.6 81 344-438 261-351 (364)
424 PF05225 HTH_psq: helix-turn-h 30.6 75 0.0016 20.5 3.1 25 407-431 1-26 (45)
425 COG1763 MobB Molybdopterin-gua 30.6 1E+02 0.0023 26.4 4.8 37 11-47 3-39 (161)
426 PRK05748 replicative DNA helic 30.6 1.2E+02 0.0027 30.8 6.3 42 11-52 204-246 (448)
427 KOG2380 Prephenate dehydrogena 30.5 57 0.0012 31.5 3.4 41 10-55 52-92 (480)
428 PF00448 SRP54: SRP54-type pro 30.5 71 0.0015 28.4 4.0 40 11-50 2-41 (196)
429 TIGR00355 purH phosphoribosyla 30.5 78 0.0017 32.4 4.6 38 25-69 11-48 (511)
430 PRK06546 pyruvate dehydrogenas 30.5 4.3E+02 0.0093 28.0 10.5 57 358-419 459-517 (578)
431 PRK00885 phosphoribosylamine-- 30.3 1.3E+02 0.0028 30.3 6.3 31 11-46 1-32 (420)
432 PRK13604 luxD acyl transferase 30.2 99 0.0022 29.7 5.1 36 10-45 36-71 (307)
433 PRK02006 murD UDP-N-acetylmura 30.1 66 0.0014 33.3 4.3 33 9-46 6-38 (498)
434 PRK06456 acetolactate synthase 30.0 2.4E+02 0.0051 29.8 8.5 25 357-381 71-101 (572)
435 cd00672 CysRS_core catalytic c 30.0 1.6E+02 0.0035 26.5 6.3 92 21-133 36-131 (213)
436 TIGR01861 ANFD nitrogenase iro 30.0 2.7E+02 0.0059 29.0 8.6 25 107-134 398-422 (513)
437 PRK08322 acetolactate synthase 29.9 1.1E+02 0.0024 32.0 6.1 27 355-381 64-96 (547)
438 PRK09165 replicative DNA helic 29.9 1E+02 0.0022 31.9 5.6 43 11-53 218-275 (497)
439 KOG3339 Predicted glycosyltran 29.9 2.8E+02 0.0062 24.3 7.2 23 15-37 42-64 (211)
440 PRK02645 ppnK inorganic polyph 29.9 1.4E+02 0.0029 28.8 6.1 29 352-382 57-89 (305)
441 PRK09219 xanthine phosphoribos 29.7 87 0.0019 27.7 4.4 28 107-134 50-79 (189)
442 TIGR02193 heptsyl_trn_I lipopo 29.7 1.1E+02 0.0023 29.4 5.4 97 10-135 179-280 (319)
443 TIGR02853 spore_dpaA dipicolin 29.6 70 0.0015 30.4 4.0 101 25-134 11-119 (287)
444 PF03808 Glyco_tran_WecB: Glyc 29.6 3.6E+02 0.0077 23.2 8.2 98 25-141 35-138 (172)
445 PRK00771 signal recognition pa 29.6 1.1E+02 0.0023 31.2 5.5 42 10-51 95-136 (437)
446 PRK02649 ppnK inorganic polyph 29.6 93 0.002 29.9 4.8 54 351-421 67-124 (305)
447 PF06418 CTP_synth_N: CTP synt 29.6 67 0.0015 29.9 3.7 40 11-50 1-43 (276)
448 cd05298 GH4_GlvA_pagL_like Gly 29.6 6.2E+02 0.013 25.8 12.9 110 27-144 45-175 (437)
449 PRK12829 short chain dehydroge 29.5 76 0.0016 29.2 4.3 40 4-47 5-44 (264)
450 PF06506 PrpR_N: Propionate ca 29.5 75 0.0016 27.6 3.9 108 22-139 17-154 (176)
451 PRK13185 chlL protochlorophyll 29.4 89 0.0019 29.1 4.8 36 11-46 3-38 (270)
452 PRK04148 hypothetical protein; 29.4 1E+02 0.0023 25.5 4.5 33 10-48 17-49 (134)
453 PRK13982 bifunctional SbtC-lik 29.3 55 0.0012 33.5 3.4 44 10-54 70-113 (475)
454 PRK03501 ppnK inorganic polyph 29.3 1.1E+02 0.0024 28.7 5.1 52 353-421 40-97 (264)
455 PRK06270 homoserine dehydrogen 29.3 2.9E+02 0.0063 26.9 8.4 59 345-404 80-150 (341)
456 PF03701 UPF0181: Uncharacteri 29.2 1.8E+02 0.0038 19.4 4.5 39 420-462 9-47 (51)
457 cd00861 ProRS_anticodon_short 29.1 93 0.002 23.3 4.1 36 11-46 2-39 (94)
458 PF13460 NAD_binding_10: NADH( 29.1 55 0.0012 28.2 3.1 44 18-69 4-47 (183)
459 cd01983 Fer4_NifH The Fer4_Nif 29.1 1.2E+02 0.0027 22.2 4.8 33 13-45 2-34 (99)
460 TIGR00725 conserved hypothetic 29.1 2.4E+02 0.0051 24.1 6.8 100 266-383 20-124 (159)
461 PF01695 IstB_IS21: IstB-like 29.0 54 0.0012 28.6 2.9 45 10-54 47-91 (178)
462 PRK13230 nitrogenase reductase 28.9 97 0.0021 29.1 4.9 37 11-47 2-38 (279)
463 PRK06276 acetolactate synthase 28.7 4.9E+02 0.011 27.6 10.6 58 358-419 470-530 (586)
464 cd07025 Peptidase_S66 LD-Carbo 28.5 1.2E+02 0.0026 28.7 5.4 73 292-381 45-119 (282)
465 TIGR01969 minD_arch cell divis 28.5 1E+02 0.0022 28.2 5.0 36 12-47 2-38 (251)
466 COG0125 Tmk Thymidylate kinase 28.4 3.4E+02 0.0075 24.3 8.0 40 10-49 3-42 (208)
467 TIGR02114 coaB_strep phosphopa 28.3 51 0.0011 30.1 2.8 20 27-46 28-47 (227)
468 PRK04020 rps2P 30S ribosomal p 28.2 29 0.00063 31.0 1.1 35 107-141 114-150 (204)
469 PRK10751 molybdopterin-guanine 28.2 1.3E+02 0.0029 26.1 5.2 41 6-46 2-42 (173)
470 PRK06457 pyruvate dehydrogenas 28.1 2.8E+02 0.006 29.2 8.6 29 351-381 63-97 (549)
471 PRK13235 nifH nitrogenase redu 28.1 99 0.0021 29.0 4.8 36 11-46 2-37 (274)
472 KOG1209 1-Acyl dihydroxyaceton 28.0 97 0.0021 27.9 4.2 18 29-46 23-40 (289)
473 PLN00016 RNA-binding protein; 28.0 69 0.0015 31.7 3.9 36 10-47 52-89 (378)
474 PRK12744 short chain dehydroge 27.9 1.1E+02 0.0023 28.1 5.0 32 12-46 9-40 (257)
475 PRK05246 glutathione synthetas 27.9 65 0.0014 31.0 3.6 38 11-48 2-42 (316)
476 PRK14618 NAD(P)H-dependent gly 27.9 62 0.0013 31.3 3.5 32 11-47 5-36 (328)
477 PF12695 Abhydrolase_5: Alpha/ 27.8 1.1E+02 0.0025 24.6 4.7 35 14-48 2-36 (145)
478 PF06180 CbiK: Cobalt chelatas 27.8 79 0.0017 29.6 3.9 40 279-319 1-43 (262)
479 PF08357 SEFIR: SEFIR domain; 27.8 74 0.0016 26.6 3.5 32 12-43 3-35 (150)
480 cd01121 Sms Sms (bacterial rad 27.8 89 0.0019 31.0 4.5 38 11-48 83-120 (372)
481 PF02702 KdpD: Osmosensitive K 27.7 97 0.0021 27.7 4.2 38 10-47 5-42 (211)
482 PRK03094 hypothetical protein; 27.7 53 0.0012 24.4 2.2 21 27-47 10-30 (80)
483 COG2085 Predicted dinucleotide 27.6 90 0.0019 28.0 4.0 33 11-48 2-34 (211)
484 cd02065 B12-binding_like B12 b 27.5 1E+02 0.0022 24.5 4.3 35 13-47 2-36 (125)
485 COG2210 Peroxiredoxin family p 27.5 1.1E+02 0.0023 25.4 4.1 37 11-47 3-40 (137)
486 PRK08978 acetolactate synthase 27.3 5.3E+02 0.012 27.0 10.6 117 281-419 392-512 (548)
487 cd01967 Nitrogenase_MoFe_alpha 27.3 2.4E+02 0.0051 28.2 7.6 33 95-134 347-379 (406)
488 TIGR01369 CPSaseII_lrg carbamo 27.3 4.7E+02 0.01 30.1 10.7 39 9-47 553-597 (1050)
489 TIGR03453 partition_RepA plasm 27.2 1E+02 0.0022 30.7 4.9 38 10-47 103-142 (387)
490 PRK08277 D-mannonate oxidoredu 27.2 1E+02 0.0023 28.6 4.8 34 11-47 10-43 (278)
491 TIGR03457 sulphoacet_xsc sulfo 27.2 3.1E+02 0.0067 29.0 8.8 26 356-381 66-97 (579)
492 PRK08265 short chain dehydroge 27.1 1.1E+02 0.0023 28.3 4.9 34 11-47 6-39 (261)
493 COG2084 MmsB 3-hydroxyisobutyr 27.1 68 0.0015 30.4 3.4 33 11-48 1-33 (286)
494 cd01141 TroA_d Periplasmic bin 26.9 80 0.0017 27.4 3.7 29 107-135 69-99 (186)
495 PF13450 NAD_binding_8: NAD(P) 26.8 76 0.0016 22.5 2.9 21 27-47 8-28 (68)
496 PRK12827 short chain dehydroge 26.7 1.1E+02 0.0024 27.7 4.8 33 10-46 6-38 (249)
497 TIGR02329 propionate_PrpR prop 26.7 4.3E+02 0.0094 27.6 9.5 107 22-137 37-172 (526)
498 PRK12939 short chain dehydroge 26.6 1.5E+02 0.0032 26.9 5.7 38 5-46 2-39 (250)
499 PRK12826 3-ketoacyl-(acyl-carr 26.6 1.3E+02 0.0028 27.2 5.3 33 11-47 7-39 (251)
500 KOG3125 Thymidine kinase [Nucl 26.5 4.7E+02 0.01 23.3 8.3 111 277-419 24-152 (234)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-64 Score=504.42 Aligned_cols=442 Identities=63% Similarity=1.138 Sum_probs=342.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
.+.||+++|++++||++|++.||+.|+.+|++||+++++.+.+.+........+++++.+|++++.+...++..++..+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~~a~~ 84 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIENSME 84 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHHHHHH
Confidence 35699999999999999999999999999999999999876555543111223799999998876433334445555555
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcccc
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLES 168 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~ 168 (479)
..+...++++++++.....+++||+|.+.+|+..+|+++|||.+.++++++..+..+.+++.....+..+....+.. ..
T Consensus 85 ~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (448)
T PLN02562 85 NTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ-LE 163 (448)
T ss_pred HhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc-cc
Confidence 56788888888877433245899999999999999999999999999998887776665554322221111110000 11
Q ss_pred ccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeEec
Q 011687 169 TARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVG 248 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~vG 248 (479)
....+|+++.++..+++.++.........+..+.+.......++.+++|||.+||+.... +++........++++.||
T Consensus 164 ~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~~~~~~~~~~~~~v~~iG 241 (448)
T PLN02562 164 KICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVK--NHQASYNNGQNPQILQIG 241 (448)
T ss_pred ccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHH--HHHhhhccccCCCEEEec
Confidence 122577777777777777553321122335555565666677889999999999987665 443200001247899999
Q ss_pred cccccccccC-CCCCcccchhhhhhhcCCCCCcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCCh
Q 011687 249 PLSKHATIAK-NPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPD 326 (479)
Q Consensus 249 pl~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~ 326 (479)
|++....... ....++.+.++.+||+.++++++||||||| .. ..+.+++++++.++++++++|||++..+....+|+
T Consensus 242 pl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS-~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~ 320 (448)
T PLN02562 242 PLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGS-WVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPP 320 (448)
T ss_pred CcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecc-cccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCH
Confidence 9986532000 112234456788999988888999999999 54 67899999999999999999999997544345888
Q ss_pred hhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCC
Q 011687 327 GYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGF 406 (479)
Q Consensus 327 ~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~ 406 (479)
++.++++ +|+++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++.+|+|+.+.++
T Consensus 321 ~~~~~~~--~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~ 398 (448)
T PLN02562 321 GYVERVS--KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGF 398 (448)
T ss_pred HHHHHhc--cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCC
Confidence 8888888 99999999999999999999999999999999999999999999999999999999997647999999889
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHH
Q 011687 407 GKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 407 ~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (479)
+.++|+++|+++|++++||+||++++++++++ ..|||++..+++++++++
T Consensus 399 ~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 399 GQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999887 667899999999999763
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.3e-61 Score=483.20 Aligned_cols=430 Identities=27% Similarity=0.461 Sum_probs=335.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC--CCCCHHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN--EPKDFFAIEKV 86 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~--~~~~~~~~~~~ 86 (479)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.... .. .....++++..+|++++.+ .......++..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~--~~-~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~ 82 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF--SP-SDDFTDFQFVTIPESLPESDFKNLGPIEFLHK 82 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc--cc-ccCCCCeEEEeCCCCCCcccccccCHHHHHHH
Confidence 3579999999999999999999999999999999999986432 11 1112469999999888763 11233455665
Q ss_pred HHHhchHHHHHHHHHhh--ccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCC-CCCCCCC
Q 011687 87 IENIMPIHLERLINKIN--EDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGY-ISDTGSP 163 (479)
Q Consensus 87 ~~~~~~~~l~~~l~~l~--~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~-~p~~~~~ 163 (479)
+...+...++++++++. ...++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++.....+. .|.....
T Consensus 83 ~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN02410 83 LNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPK 162 (451)
T ss_pred HHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccc
Confidence 66567777888887762 22257999999999999999999999999999999888876655443322211 1211100
Q ss_pred CccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCc
Q 011687 164 QHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPK 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (479)
......+|+.+.+...+++...... .......+.. ...+..++.+++|||.+||+...+ ++++ .++++
T Consensus 163 ---~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~--~l~~----~~~~~ 230 (451)
T PLN02410 163 ---GQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTASCLESSSLS--RLQQ----QLQIP 230 (451)
T ss_pred ---cCccccCCCCCCCChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHH--HHHh----ccCCC
Confidence 0112246776666666666432211 1122222222 223467889999999999999888 7776 44578
Q ss_pred eeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCc---
Q 011687 244 VLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAW--- 320 (479)
Q Consensus 244 v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~--- 320 (479)
+++|||++..... ....+..++++.+||+.++++++||||||| ....+.+++.+++.+|+..+.+|+|++..+.
T Consensus 231 v~~vGpl~~~~~~--~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS-~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~ 307 (451)
T PLN02410 231 VYPIGPLHLVASA--PTSLLEENKSCIEWLNKQKKNSVIFVSLGS-LALMEINEVMETASGLDSSNQQFLWVIRPGSVRG 307 (451)
T ss_pred EEEecccccccCC--CccccccchHHHHHHHhCCCCcEEEEEccc-cccCCHHHHHHHHHHHHhcCCCeEEEEccCcccc
Confidence 9999999764320 112223344688999998889999999999 8899999999999999999999999998431
Q ss_pred ---CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHh
Q 011687 321 ---REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMW 397 (479)
Q Consensus 321 ---~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~ 397 (479)
...+|+++.++++ +|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 308 ~~~~~~lp~~f~er~~--~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 308 SEWIESLPKEFSKIIS--GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred cchhhcCChhHHHhcc--CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 1237999999999 99999999999999999999999999999999999999999999999999999999998746
Q ss_pred cceeeeCC-CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHh
Q 011687 398 KIGIRVNG-FGKRDIEDGLKKLKEDS---EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSK 458 (479)
Q Consensus 398 Gvg~~~~~-~~~~~i~~~i~~vl~~~---~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (479)
|+|+.+.. ++.++|+++|+++|.++ ++|+++++++++++++..+|||++..++++++++..
T Consensus 386 ~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 386 KIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999965 99999999999999654 799999999999999999999999999999998753
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.2e-60 Score=475.98 Aligned_cols=434 Identities=27% Similarity=0.501 Sum_probs=339.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccccc--CC-C---C---CCCeEEEeCCCCCCCC--CC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITS--SM-D---P---RSEISCMSIPDGLEKN--EP 77 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~--~~-~---~---~~g~~~~~i~~~l~~~--~~ 77 (479)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+ .. . . ...++|..+|++++.+ ..
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 36899999999999999999999999999999999999875554431 00 0 1 1236777788877653 12
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhccCC-ceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCC
Q 011687 78 KDFFAIEKVIENIMPIHLERLINKINEDGR-VACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGY 156 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (479)
.++..++..+...+...++++++++....+ +++||+|.+..|+..+|+++|||.+.+++++++.+..+.+++. +.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~----~~ 161 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH----GL 161 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh----cC
Confidence 244456666665677888888877632224 4999999999999999999999999999999888887666532 11
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccc
Q 011687 157 ISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKG 236 (479)
Q Consensus 157 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 236 (479)
.+...... ......+|+++.++..+++.++.........+..+.+.......++.+++|||.+||..... ++++
T Consensus 162 ~~~~~~~~--~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~--~l~~-- 235 (480)
T PLN02555 162 VPFPTETE--PEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID--YMSK-- 235 (480)
T ss_pred CCcccccC--CCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH--HHhh--
Confidence 12111100 01123478887777788886554322233445555566666678889999999999998887 6655
Q ss_pred cccCCCceeEeccccccccc--cC-CCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeE
Q 011687 237 ATLCRPKVLLVGPLSKHATI--AK-NPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFI 313 (479)
Q Consensus 237 ~~~~~~~v~~vGpl~~~~~~--~~-~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~i 313 (479)
. .+ ++.|||+...... .. ....+..++++.+||+.++++++||||||| ....+.+++.+++.+++..+++||
T Consensus 236 --~-~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS-~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 236 --L-CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGT-VVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred --C-CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEecc-ccCCCHHHHHHHHHHHHhcCCeEE
Confidence 2 24 9999999753210 00 011133456799999988888999999999 889999999999999999999999
Q ss_pred EEEcCCc------CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh
Q 011687 314 WVLGFAW------REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF 387 (479)
Q Consensus 314 w~~~~~~------~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 387 (479)
|++.... ...+|+++.++++ +|+++++|+||.+||.|+++++|||||||||++||+++|||||++|+++||+
T Consensus 311 W~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~ 388 (480)
T PLN02555 311 WVMRPPHKDSGVEPHVLPEEFLEKAG--DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQV 388 (480)
T ss_pred EEEecCcccccchhhcCChhhhhhcC--CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccH
Confidence 9997421 1247888888888 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcceeeeC-----C--CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHH
Q 011687 388 INCAYIVKMWKIGIRVN-----G--FGKRDIEDGLKKLKED---SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 388 ~nA~rv~~~~Gvg~~~~-----~--~~~~~i~~~i~~vl~~---~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (479)
.||+++++.+|+|+.+. . ++.++|.++|+++|++ +++|+||++++++++++..+|||++..++++|+.+.
T Consensus 389 ~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 389 TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999887469999992 2 8999999999999954 579999999999999999999999999999999987
Q ss_pred hh
Q 011687 458 KL 459 (479)
Q Consensus 458 ~~ 459 (479)
..
T Consensus 469 ~~ 470 (480)
T PLN02555 469 RK 470 (480)
T ss_pred hc
Confidence 54
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-60 Score=472.68 Aligned_cols=435 Identities=20% Similarity=0.349 Sum_probs=327.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEcCCcccc-c----cccCCCCCCCeEEEeCCCCCC-C--CCC
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRG--FEPIVITPEFIHN-Q----ITSSMDPRSEISCMSIPDGLE-K--NEP 77 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~rG--h~V~~~~~~~~~~-~----i~~~~~~~~g~~~~~i~~~l~-~--~~~ 77 (479)
|++.|++++|++++||++|++.||+.|+.+| ..||+++++...+ . +........+++|..+|++.. . +..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 3567999999999999999999999999998 9999999986431 1 111001123699999996432 1 111
Q ss_pred CCHHHHHHHHHHhchH----HHHHHHHHhhccCC-ceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhh
Q 011687 78 KDFFAIEKVIENIMPI----HLERLINKINEDGR-VACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMI 152 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~----~l~~~l~~l~~~~~-~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (479)
.+....+......+.. .+.+++++.....+ +++||+|.+.+|+..+|+++|||.+.++++++..+..+.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 2333333333334533 34444443311123 499999999999999999999999999999988887766655322
Q ss_pred hcCC-CCCCCCCCccccccccCCCC-CCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhh
Q 011687 153 KSGY-ISDTGSPQHLESTARFLPNQ-PMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQ 230 (479)
Q Consensus 153 ~~~~-~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 230 (479)
.... .+. +.. . ....+|++ +.+...+++.++..... +..+.+......+++.+++||++++|.+...
T Consensus 161 ~~~~~~~~---~~~-~-~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~-- 229 (468)
T PLN02207 161 SKDTSVFV---RNS-E-EMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVN-- 229 (468)
T ss_pred ccccccCc---CCC-C-CeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHH--
Confidence 1100 000 000 1 12357887 46777777765532221 3334444555678999999999999998776
Q ss_pred hhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCC
Q 011687 231 YHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGL 310 (479)
Q Consensus 231 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~ 310 (479)
+++.. ...++++.|||++.......+......++++.+||+.++++++||||||| ....+.+++++++.+|+.+++
T Consensus 230 ~~~~~---~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS-~~~~~~~q~~ela~~l~~~~~ 305 (468)
T PLN02207 230 HFLDE---QNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGS-MGRLRGPLVKEIAHGLELCQY 305 (468)
T ss_pred HHHhc---cCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEecc-CcCCCHHHHHHHHHHHHHCCC
Confidence 55320 12478999999986432101000011235799999988888999999999 889999999999999999999
Q ss_pred CeEEEEcCCc---CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh
Q 011687 311 PFIWVLGFAW---REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF 387 (479)
Q Consensus 311 ~~iw~~~~~~---~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 387 (479)
+|||++.... .+.+|+++.++++ +|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 306 ~flW~~r~~~~~~~~~lp~~f~er~~--~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 306 RFLWSLRTEEVTNDDLLPEGFLDRVS--GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred cEEEEEeCCCccccccCCHHHHhhcC--CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccch
Confidence 9999998422 2357889998888 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcceeeeC--------C-CCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 388 INCAYIVKMWKIGIRVN--------G-FGKRDIEDGLKKLKE--DSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 388 ~nA~rv~~~~Gvg~~~~--------~-~~~~~i~~~i~~vl~--~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
.||+++++.+|+|+.+. . ++.++|.++|+++|+ +++||+||++++++++++..+|||++..++++++.+
T Consensus 384 ~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 384 LNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99998765589998662 2 699999999999996 689999999999999999999999999999999987
Q ss_pred Hhh
Q 011687 457 SKL 459 (479)
Q Consensus 457 ~~~ 459 (479)
..+
T Consensus 464 ~~~ 466 (468)
T PLN02207 464 IGI 466 (468)
T ss_pred Hhc
Confidence 643
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.8e-60 Score=475.51 Aligned_cols=426 Identities=28% Similarity=0.482 Sum_probs=324.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHH--HHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASI--LTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKV 86 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~--L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~ 86 (479)
.+.||+++|+|++||++|++.||+. |++||++|||++++.+.+.++........+.+..+|++++++.......++..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~~~~~ 86 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPETLLKS 86 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHHHHHH
Confidence 4679999999999999999999999 55999999999999876665431122345788878887776432344455555
Q ss_pred HHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcc
Q 011687 87 IENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHL 166 (479)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 166 (479)
+.+.+...+++++++. ++|+||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++.. ....+....
T Consensus 87 ~~~~~~~~l~~~l~~~----~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~~~~---- 156 (456)
T PLN02210 87 LNKVGAKNLSKIIEEK----RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPDLED---- 156 (456)
T ss_pred HHHhhhHHHHHHHhcC----CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCcccc----
Confidence 5555666666666554 799999999999999999999999999999888887765544321 111111100
Q ss_pred ccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHH-hhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCcee
Q 011687 167 ESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTL-ERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVL 245 (479)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~ 245 (479)
......+|+++.+...+++..+.... ...+..+.... .....++.+++|++.++|....+ ++++ .++++
T Consensus 157 ~~~~~~~Pgl~~~~~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~l~~------~~~v~ 226 (456)
T PLN02210 157 LNQTVELPALPLLEVRDLPSFMLPSG--GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIE--SMAD------LKPVI 226 (456)
T ss_pred cCCeeeCCCCCCCChhhCChhhhcCC--chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHH--HHhh------cCCEE
Confidence 00123467766566666665443221 12222232222 23456789999999999998887 6654 25799
Q ss_pred Eeccccccc---cccCC------CCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEE
Q 011687 246 LVGPLSKHA---TIAKN------PSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVL 316 (479)
Q Consensus 246 ~vGpl~~~~---~~~~~------~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~ 316 (479)
+|||++... .+... ...+..+++|.+||+.++++++||||||| ....+.+++++++.+|+..+++|||++
T Consensus 227 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS-~~~~~~~~~~e~a~~l~~~~~~flw~~ 305 (456)
T PLN02210 227 PIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGS-MLESLENQVETIAKALKNRGVPFLWVI 305 (456)
T ss_pred EEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecc-cccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 999997421 10000 01234456789999988889999999999 888899999999999999999999999
Q ss_pred cCCcCCCCChhhHhhh-cCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHH
Q 011687 317 GFAWREGLPDGYLDRV-SNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVK 395 (479)
Q Consensus 317 ~~~~~~~l~~~~~~~~-~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~ 395 (479)
+.......++.+.++. + +++++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||+++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~--~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 306 RPKEKAQNVQVLQEMVKE--GQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred eCCccccchhhHHhhccC--CCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 7532212233444443 3 677888999999999999999999999999999999999999999999999999999976
Q ss_pred HhcceeeeC------CCCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHH
Q 011687 396 MWKIGIRVN------GFGKRDIEDGLKKLKEDS---EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 396 ~~Gvg~~~~------~~~~~~i~~~i~~vl~~~---~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (479)
.+|+|+.+. .++.++|+++|+++|+++ ++|+||++++++.+++..+|||++..++++++.+.
T Consensus 384 ~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 384 VFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 489999884 289999999999999765 49999999999999999999999999999999874
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-60 Score=470.70 Aligned_cols=419 Identities=28% Similarity=0.525 Sum_probs=329.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC---CCCCHHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN---EPKDFFAIEKV 86 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~---~~~~~~~~~~~ 86 (479)
+.||+++|++++||++|++.||+.|+.+|+.|||++++...+.+.. ....++++..+|+++++. .......++..
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~--~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHL--DPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhccc--CCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 5699999999999999999999999999999999999865444432 112469999999888762 22345566666
Q ss_pred HHHhchHHHHHHHHHhhccCCc-eEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 011687 87 IENIMPIHLERLINKINEDGRV-ACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQH 165 (479)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~-D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 165 (479)
+...+...++++++++....+| ++||+|.+.+|+..+|+++|||.+.+++++++....+.. +.. ..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~---------- 150 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG---------- 150 (449)
T ss_pred HHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC----------
Confidence 6666888888888776332345 999999999999999999999999999988776644332 111 100
Q ss_pred cccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCcee
Q 011687 166 LESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVL 245 (479)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~ 245 (479)
. ....+|+++.++..+++.++.........+..+.+.......++.+++|||.++|+...+ +++. .++++
T Consensus 151 -~-~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~~~~------~~~v~ 220 (449)
T PLN02173 151 -S-LTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENE--LLSK------VCPVL 220 (449)
T ss_pred -C-ccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHH--HHHh------cCCee
Confidence 0 012256666666777776554322222344445555666678889999999999998887 6654 24799
Q ss_pred Eeccccccc----cc-cCCC---CCc--ccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEE
Q 011687 246 LVGPLSKHA----TI-AKNP---SLW--EEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWV 315 (479)
Q Consensus 246 ~vGpl~~~~----~~-~~~~---~~~--~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~ 315 (479)
.|||++... .. .... ..+ ..++++.+||+.++++++||||||| ....+.+++.+++.+| .+.+|+|+
T Consensus 221 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS-~~~~~~~~~~ela~gL--s~~~flWv 297 (449)
T PLN02173 221 TIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGS-MAKLSSEQMEEIASAI--SNFSYLWV 297 (449)
T ss_pred EEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecc-cccCCHHHHHHHHHHh--cCCCEEEE
Confidence 999997421 00 0000 111 2244699999998889999999999 8889999999999999 67789999
Q ss_pred EcCCcCCCCChhhHhhh-cCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHH
Q 011687 316 LGFAWREGLPDGYLDRV-SNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIV 394 (479)
Q Consensus 316 ~~~~~~~~l~~~~~~~~-~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~ 394 (479)
+.......+|+++.+++ + +|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 298 vr~~~~~~lp~~~~~~~~~--~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~ 375 (449)
T PLN02173 298 VRASEESKLPPGFLETVDK--DKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQ 375 (449)
T ss_pred EeccchhcccchHHHhhcC--CceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHH
Confidence 98543345788887777 4 78999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcceeeeCC------CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHH
Q 011687 395 KMWKIGIRVNG------FGKRDIEDGLKKLKED---SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 395 ~~~Gvg~~~~~------~~~~~i~~~i~~vl~~---~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (479)
+.+|+|+.+.. ++.++|.++++++|++ +++|++|++++++.+++..+|||++..++++++.+.
T Consensus 376 ~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 376 DVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 75699988741 6899999999999965 569999999999999999999999999999999874
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.8e-60 Score=468.22 Aligned_cols=421 Identities=25% Similarity=0.429 Sum_probs=324.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCcc-ccccccCCCCCCCeEEEeCCCCCCCC---CCCCHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFI-HNQITSSMDPRSEISCMSIPDGLEKN---EPKDFFAI 83 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~-~~~i~~~~~~~~g~~~~~i~~~l~~~---~~~~~~~~ 83 (479)
.+.||+++|++++||++|++.||+.|+. +|+.|||++++.. ...+.+......+++++.++++++.. ........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3569999999999999999999999995 7999999999842 22221111112369999999888763 12344555
Q ss_pred HHHHHHhchHHHHHHHHHhhcc-CCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCC
Q 011687 84 EKVIENIMPIHLERLINKINED-GRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGS 162 (479)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~-~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~ 162 (479)
+..+...+...++++++++... .++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++.. .
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----~------ 151 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----N------ 151 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc----C------
Confidence 6666666888888888876322 2459999999999999999999999999999999888776554311 0
Q ss_pred CCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhc--CCceEEEcCchhhhhhhhhhhhhcccccccC
Q 011687 163 PQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSR--NLKWLLVNSFPEEYMDDIKQQYHHSKGATLC 240 (479)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 240 (479)
. ....+|+++.++..+++.++............+.+...... .++.+++|||.+||....+ +++.
T Consensus 152 ----~-~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~l~~------ 218 (455)
T PLN02152 152 ----N-SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLT--AIPN------ 218 (455)
T ss_pred ----C-CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHH--hhhc------
Confidence 0 01246777666777777655432212112222223332222 2468999999999998887 6643
Q ss_pred CCceeEecccccccc--ccCCC---CCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEE
Q 011687 241 RPKVLLVGPLSKHAT--IAKNP---SLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWV 315 (479)
Q Consensus 241 ~~~v~~vGpl~~~~~--~~~~~---~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~ 315 (479)
.+++.|||+..... ..... ..++.+.++.+||+.++++++||||||| ...++.+++++|+.+|+.++++|||+
T Consensus 219 -~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS-~~~l~~~q~~ela~gL~~s~~~flWv 296 (455)
T PLN02152 219 -IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGT-MVELSKKQIEELARALIEGKRPFLWV 296 (455)
T ss_pred -CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecc-cccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 36999999975321 00000 1112344799999988888999999999 88999999999999999999999999
Q ss_pred EcCCcC-------C-----CCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCc
Q 011687 316 LGFAWR-------E-----GLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA 383 (479)
Q Consensus 316 ~~~~~~-------~-----~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 383 (479)
+..... . .+++++.++.+ +|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++|++
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~--~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 297 ITDKLNREAKIEGEEETEIEKIAGFRHELE--EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred EecCcccccccccccccccccchhHHHhcc--CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc
Confidence 975210 0 23678888888 999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcceeeeC----C-CCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 384 GDQFINCAYIVKMWKIGIRVN----G-FGKRDIEDGLKKLKEDS--EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 384 ~DQ~~nA~rv~~~~Gvg~~~~----~-~~~~~i~~~i~~vl~~~--~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
+||+.||+++++.+|+|+.+. . ++.++|+++|+++|+++ ++|+||++++++++++..+|||++.+++++++++
T Consensus 375 ~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 375 SDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred ccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999987567777663 2 69999999999999654 4899999999999999999999999999999875
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.6e-59 Score=469.82 Aligned_cols=439 Identities=23% Similarity=0.379 Sum_probs=328.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCC----CCCCC------
Q 011687 6 CTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPD----GLEKN------ 75 (479)
Q Consensus 6 ~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~----~l~~~------ 75 (479)
+...+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.+.+........++++..+|. +++++
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 33457899999999999999999999999999999999999876655543212223577766542 33332
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcC
Q 011687 76 EPKDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSG 155 (479)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (479)
...+....+......+...+.+++++. ..++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++..
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~---- 158 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSH--PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE---- 158 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC--CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc----
Confidence 111112222222233455555555543 12679999999999999999999999999999999988877665421
Q ss_pred CCCCCCCCCc-ccc-ccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhc
Q 011687 156 YISDTGSPQH-LES-TARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHH 233 (479)
Q Consensus 156 ~~p~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 233 (479)
.|....... +.. .+..+|+++.+...+++.++............+.+.......++.+++|||.++|+...+ +++
T Consensus 159 -~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~~~ 235 (477)
T PLN02863 159 -MPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLE--HLK 235 (477)
T ss_pred -ccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHH--HHH
Confidence 111000000 011 123478777777777776554322222333334444443456778999999999999888 776
Q ss_pred ccccccCC-CceeEecccccccccc----C-CCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHh
Q 011687 234 SKGATLCR-PKVLLVGPLSKHATIA----K-NPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEA 307 (479)
Q Consensus 234 ~~~~~~~~-~~v~~vGpl~~~~~~~----~-~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~ 307 (479)
+ .+. ++++.|||+....... . .......++++.+||+.++++++||||||| ....+.+++.+++.+|+.
T Consensus 236 ~----~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS-~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 236 K----ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGS-QVVLTKEQMEALASGLEK 310 (477)
T ss_pred h----hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeec-eecCCHHHHHHHHHHHHh
Confidence 6 343 6799999997532100 0 001111345799999988889999999999 888999999999999999
Q ss_pred CCCCeEEEEcCCc-----CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccC
Q 011687 308 LGLPFIWVLGFAW-----REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPV 382 (479)
Q Consensus 308 ~~~~~iw~~~~~~-----~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 382 (479)
++++|||+++... ...+|+++.+++. +.++++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+
T Consensus 311 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 311 SGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred CCCcEEEEECCCcccccchhhCCHHHHHHhc-cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 9999999997432 1247888877765 234555599999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcceeeeCC-----CCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 383 AGDQFINCAYIVKMWKIGIRVNG-----FGKRDIEDGLKKLK-EDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 383 ~~DQ~~nA~rv~~~~Gvg~~~~~-----~~~~~i~~~i~~vl-~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
++||+.||+++++.+|+|+++.. .+.++|.++++++| ++++||+||++++++++++..+|||++..++++++++
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 99999999997543899999832 68999999999999 7899999999999999999999999999999999998
Q ss_pred Hhh
Q 011687 457 SKL 459 (479)
Q Consensus 457 ~~~ 459 (479)
...
T Consensus 470 ~~~ 472 (477)
T PLN02863 470 VEL 472 (477)
T ss_pred HHh
Confidence 754
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.9e-59 Score=467.54 Aligned_cols=434 Identities=23% Similarity=0.359 Sum_probs=321.7
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCC-CCCeEEEeCC----CCCCCC--CCCC
Q 011687 7 TKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDP-RSEISCMSIP----DGLEKN--EPKD 79 (479)
Q Consensus 7 ~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~-~~g~~~~~i~----~~l~~~--~~~~ 79 (479)
+..+.||+++|++++||++|++.||+.|+.||..|||++++.....+...... ..+++++.+| ++++.+ ...+
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 44567999999999999999999999999999999999998765444421111 1358888888 566643 1111
Q ss_pred H----HHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcC
Q 011687 80 F----FAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSG 155 (479)
Q Consensus 80 ~----~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (479)
. ..++....+.+...++++++++ ++++||+|.+.+|+..+|+++|||.+.+++++++....+.+.......+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 1 1233344445667777777665 7999999999999999999999999999998887776644332221111
Q ss_pred CCCCCCCCCccccccccCCCCC--CCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhc
Q 011687 156 YISDTGSPQHLESTARFLPNQP--MLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHH 233 (479)
Q Consensus 156 ~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 233 (479)
..+.... .. ......+|... .++..+++.++............+.+....+.+++.+++|||.+||+...+ +++
T Consensus 159 ~~~~~~~-~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~--~l~ 234 (472)
T PLN02670 159 DLRSTAE-DF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFD--LLS 234 (472)
T ss_pred cCCCccc-cc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHH--HHH
Confidence 1111100 00 00011122211 123345554432211111223334444444567889999999999999988 776
Q ss_pred ccccccCCCceeEeccccccccccCCCCCc--ccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCC
Q 011687 234 SKGATLCRPKVLLVGPLSKHATIAKNPSLW--EEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLP 311 (479)
Q Consensus 234 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~ 311 (479)
+ .++++++.|||+............. ..++++.+|||.++++++||||||| ...++.+++.+++.+|+.++++
T Consensus 235 ~----~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS-~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 235 D----LYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGT-EASLRREEVTELALGLEKSETP 309 (472)
T ss_pred H----hhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecc-cccCCHHHHHHHHHHHHHCCCC
Confidence 5 3346899999997531100000000 1125689999988889999999999 8899999999999999999999
Q ss_pred eEEEEcCCc------CCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCcc
Q 011687 312 FIWVLGFAW------REGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAG 384 (479)
Q Consensus 312 ~iw~~~~~~------~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 384 (479)
|||++.... ...+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||++||+++|||+|++|+++
T Consensus 310 FlWv~r~~~~~~~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 387 (472)
T PLN02670 310 FFWVLRNEPGTTQNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLN 387 (472)
T ss_pred EEEEEcCCcccccchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchh
Confidence 999998421 1258889998887 777776 9999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcceeeeCC------CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHcccccCCCchhHHHHHHHHH
Q 011687 385 DQFINCAYIVKMWKIGIRVNG------FGKRDIEDGLKKLKEDS---EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDD 455 (479)
Q Consensus 385 DQ~~nA~rv~~~~Gvg~~~~~------~~~~~i~~~i~~vl~~~---~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~ 455 (479)
||+.||+++++ +|+|+.++. ++.++|.++|+++|+++ +||+||+++++.+++. ++..++++++++.
T Consensus 388 DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~~~ 462 (472)
T PLN02670 388 EQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELVHY 462 (472)
T ss_pred ccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHHHH
Confidence 99999999999 999999842 89999999999999765 7999999999999996 6688899999988
Q ss_pred HHhhh
Q 011687 456 LSKLT 460 (479)
Q Consensus 456 ~~~~~ 460 (479)
+....
T Consensus 463 l~~~~ 467 (472)
T PLN02670 463 LRENR 467 (472)
T ss_pred HHHhc
Confidence 77665
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.1e-59 Score=470.22 Aligned_cols=430 Identities=27% Similarity=0.442 Sum_probs=330.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC--CCCCHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN--EPKDFFAIE 84 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~--~~~~~~~~~ 84 (479)
.+.||+++|+|++||++|++.||+.|+.| ||+|||++++.+.+.++... ...|++|+.+|++++.+ ...+...++
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-~~~gi~fv~lp~~~p~~~~~~~~~~~~~ 87 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-KPDNIRFATIPNVIPSELVRAADFPGFL 87 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-CCCCEEEEECCCCCCCccccccCHHHHH
Confidence 47899999999999999999999999999 99999999998776666521 12489999999766543 123445555
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
..+...+...++++++++. .++|+||+|.+++|+..+|+++|||++.++++++..+..+.+++.....+..|......
T Consensus 88 ~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (459)
T PLN02448 88 EAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSES 165 (459)
T ss_pred HHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccc
Confidence 5555456777777777653 26899999999999999999999999999999987777655554322111112111000
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCce
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKV 244 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v 244 (479)
. ......+|+++.++..+++.++... ....++.+...+.....++.+++||+.+||+...+ ++++ .++.++
T Consensus 166 ~-~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~l~~----~~~~~~ 236 (459)
T PLN02448 166 G-EERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAID--ALKS----KFPFPV 236 (459)
T ss_pred c-CCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHH--HHHh----hcCCce
Confidence 0 1112246766666666666544321 22234455555555567789999999999998787 7766 445689
Q ss_pred eEecccccccccc-CCCC-Cc-ccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcC
Q 011687 245 LLVGPLSKHATIA-KNPS-LW-EEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWR 321 (479)
Q Consensus 245 ~~vGpl~~~~~~~-~~~~-~~-~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~ 321 (479)
+.|||+....... .... .. ..+.++.+|++.++++++||||||| ....+.+++++++.+|+..+++|||++....
T Consensus 237 ~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs-~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~- 314 (459)
T PLN02448 237 YPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGS-FLSVSSAQMDEIAAGLRDSGVRFLWVARGEA- 314 (459)
T ss_pred EEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecc-cccCCHHHHHHHHHHHHhCCCCEEEEEcCch-
Confidence 9999997532100 0000 01 1224688999988889999999999 7788899999999999999999999886421
Q ss_pred CCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhccee
Q 011687 322 EGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGI 401 (479)
Q Consensus 322 ~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~ 401 (479)
..+.+..+ +|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+
T Consensus 315 ----~~~~~~~~--~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~ 388 (459)
T PLN02448 315 ----SRLKEICG--DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGW 388 (459)
T ss_pred ----hhHhHhcc--CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceE
Confidence 23434444 789999999999999999999999999999999999999999999999999999999987468888
Q ss_pred eeC------C-CCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHh
Q 011687 402 RVN------G-FGKRDIEDGLKKLKED-----SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSK 458 (479)
Q Consensus 402 ~~~------~-~~~~~i~~~i~~vl~~-----~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (479)
.+. . +++++|+++++++|++ +++|+||++++++++++..+|||+++.++++++++.+
T Consensus 389 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 389 RVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 773 1 7999999999999965 3799999999999999999999999999999998863
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.9e-59 Score=463.07 Aligned_cols=427 Identities=25% Similarity=0.373 Sum_probs=323.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCccccccccCCCCCCCeEEEeCCC----CCCCCCCCCHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPD----GLEKNEPKDFFAIE 84 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~----~l~~~~~~~~~~~~ 84 (479)
+.||+++|++++||++|++.||+.|+ ++|+.|||++++.....+.+......++.+..+|. ++++.. ......+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~-~~~~~~~ 83 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS-AHVVTKI 83 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC-ccHHHHH
Confidence 57999999999999999999999998 78999999999875444322111123688888884 443211 1222222
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
......+...++++++++. .+|++||+|.+.+|+..+|+++|||.+.+++++++.+..+.++|........+.. .
T Consensus 84 ~~~~~~~~~~~~~~l~~~~--~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~-~-- 158 (481)
T PLN02992 84 GVIMREAVPTLRSKIAEMH--QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHT-V-- 158 (481)
T ss_pred HHHHHHhHHHHHHHHHhcC--CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccc-c--
Confidence 2233345566777776541 2789999999999999999999999999999988887765555432111000000 0
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhccc--ccccCCC
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSK--GATLCRP 242 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~--~~~~~~~ 242 (479)
......+|+.+.++..+++..+... ....+..+.+.......++.+++|||.+||....+ +++.. .+....+
T Consensus 159 --~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~--~l~~~~~~~~~~~~ 232 (481)
T PLN02992 159 --QRKPLAMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLK--SLQDPKLLGRVARV 232 (481)
T ss_pred --CCCCcccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH--HHhhccccccccCC
Confidence 0011347777666666666433221 11234445555555678889999999999998887 66531 0000125
Q ss_pred ceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCc--
Q 011687 243 KVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAW-- 320 (479)
Q Consensus 243 ~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~-- 320 (479)
+++.|||+..... . ...++++.+||+.++++++||||||| ...++.+++.+|+.+|+.++++|||++....
T Consensus 233 ~v~~VGPl~~~~~-----~-~~~~~~c~~wLd~~~~~sVvyvsfGS-~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~ 305 (481)
T PLN02992 233 PVYPIGPLCRPIQ-----S-SKTDHPVLDWLNKQPNESVLYISFGS-GGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG 305 (481)
T ss_pred ceEEecCccCCcC-----C-CcchHHHHHHHHcCCCCceEEEeecc-cccCCHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 7999999975321 1 12345799999988889999999999 8999999999999999999999999996310
Q ss_pred ------------------CCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceeccc
Q 011687 321 ------------------REGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 321 ------------------~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P 381 (479)
...+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||+.||+++|||||++|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P 383 (481)
T PLN02992 306 SACSAYFSANGGETRDNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP 383 (481)
T ss_pred ccccccccCcccccccchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecC
Confidence 1247888888887 666665 9999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHH-HHhcceeeeCC----CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHccccc--CCCchhHHHHH
Q 011687 382 VAGDQFINCAYIV-KMWKIGIRVNG----FGKRDIEDGLKKLKED---SEMKHRLMNLYMRTMGDDG--ARARVMNNLTG 451 (479)
Q Consensus 382 ~~~DQ~~nA~rv~-~~~Gvg~~~~~----~~~~~i~~~i~~vl~~---~~~~~~a~~l~~~~~~~~~--~g~~~~~~~~~ 451 (479)
+++||+.||++++ + +|+|+.++. ++.++|.++|+++|++ +++|+++++++++++++.. +|||++..+++
T Consensus 384 ~~~DQ~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~ 462 (481)
T PLN02992 384 LFAEQNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCR 462 (481)
T ss_pred ccchhHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999995 7 999999953 8999999999999965 5899999999999999984 59999999999
Q ss_pred HHHHHHh
Q 011687 452 FVDDLSK 458 (479)
Q Consensus 452 ~~~~~~~ 458 (479)
+++.+.+
T Consensus 463 ~v~~~~~ 469 (481)
T PLN02992 463 VTKECQR 469 (481)
T ss_pred HHHHHHH
Confidence 9998764
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8e-59 Score=469.76 Aligned_cols=432 Identities=25% Similarity=0.405 Sum_probs=323.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEcCCcccccc-------ccCCCC-CCCeEEEeCCCCCCCCC-CC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRG--FEPIVITPEFIHNQI-------TSSMDP-RSEISCMSIPDGLEKNE-PK 78 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~i-------~~~~~~-~~g~~~~~i~~~l~~~~-~~ 78 (479)
++||+++|++++||++|++.||+.|+.+| ..|||++++.+...+ ...... ..+++++.+|++.+... ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 58999999999999999999999999998 889999987653321 110000 23699999997654221 11
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhh-----ccCC-ceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhh
Q 011687 79 DFFAIEKVIENIMPIHLERLINKIN-----EDGR-VACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMI 152 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~-~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 152 (479)
.+..++. .+...+++.++++. ...+ .++||+|.++.|+..+|+++|||++.+++++++.+..+.+++...
T Consensus 82 ~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 82 TFQSYID----NQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 2222222 34444555555441 1113 389999999999999999999999999999999988877765432
Q ss_pred hcCCCCCCCCCCccccccccCCCCC-CCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhh
Q 011687 153 KSGYISDTGSPQHLESTARFLPNQP-MLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQY 231 (479)
Q Consensus 153 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 231 (479)
.....+....+. ......+|++. .++..+++..... ...+..+.+.......++.+++|++.+++..... +
T Consensus 158 ~~~~~~~~~~~~--~~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~--~ 229 (481)
T PLN02554 158 DEKKYDVSELED--SEVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALK--F 229 (481)
T ss_pred cccccCccccCC--CCceeECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH--H
Confidence 211011000000 11112367763 4555666654322 1223444555556678889999999999987766 5
Q ss_pred hcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCC
Q 011687 232 HHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLP 311 (479)
Q Consensus 232 ~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~ 311 (479)
+... ....++++.|||+........ ......++++.+||+.++++++||||||| ....+.+++.+++.+|+.++++
T Consensus 230 l~~~--~~~~~~v~~vGpl~~~~~~~~-~~~~~~~~~~~~wLd~~~~~svvyvsfGS-~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 230 FSGS--SGDLPPVYPVGPVLHLENSGD-DSKDEKQSEILRWLDEQPPKSVVFLCFGS-MGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHhc--ccCCCCEEEeCCCcccccccc-ccccccchHHHHHHhcCCCCcEEEEeccc-cccCCHHHHHHHHHHHHHcCCC
Confidence 5430 012378999999943211000 00012345799999988888999999999 8889999999999999999999
Q ss_pred eEEEEcCCc--------------CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcce
Q 011687 312 FIWVLGFAW--------------REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRL 377 (479)
Q Consensus 312 ~iw~~~~~~--------------~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 377 (479)
|||++.... ...+|+++.++++ +|+++++|+||.+||+|+++++|||||||||++||+++||||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~--~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~ 383 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK--DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPM 383 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhc--cCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCE
Confidence 999997521 1125888888888 999999999999999999999999999999999999999999
Q ss_pred ecccCccchhhHHH-HHHHHhcceeeeC------------C-CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHcccccCC
Q 011687 378 LCYPVAGDQFINCA-YIVKMWKIGIRVN------------G-FGKRDIEDGLKKLKE-DSEMKHRLMNLYMRTMGDDGAR 442 (479)
Q Consensus 378 l~~P~~~DQ~~nA~-rv~~~~Gvg~~~~------------~-~~~~~i~~~i~~vl~-~~~~~~~a~~l~~~~~~~~~~g 442 (479)
|++|+++||+.||+ ++++ +|+|+.++ . ++.++|.++|+++|+ +++||+||++++++++++..+|
T Consensus 384 l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~g 462 (481)
T PLN02554 384 AAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDG 462 (481)
T ss_pred EecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999995 5777 99999884 2 899999999999995 7999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhh
Q 011687 443 ARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~ 460 (479)
||++.+++++++++..+.
T Consensus 463 Gss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 463 GSSHTALKKFIQDVTKNI 480 (481)
T ss_pred ChHHHHHHHHHHHHHhhC
Confidence 999999999999988764
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=9.8e-59 Score=460.57 Aligned_cols=422 Identities=21% Similarity=0.373 Sum_probs=317.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEE--EcCCcccccc----ccCCCCCCCeEEEeCCCCCCC--C--C
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRG--FEPIV--ITPEFIHNQI----TSSMDPRSEISCMSIPDGLEK--N--E 76 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rG--h~V~~--~~~~~~~~~i----~~~~~~~~g~~~~~i~~~l~~--~--~ 76 (479)
.+.||+++|++++||++|++.||+.|+.+| +.||+ ++++.+...+ +......+++++..+|.+.+. . .
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 468999999999999999999999999998 55655 4444322211 111111246999999976532 1 1
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCC
Q 011687 77 PKDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGY 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (479)
.......+......+...+.++++++.....+++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~-- 159 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET-- 159 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc--
Confidence 112233333344457777778887763222459999999999999999999999999999999888877665532111
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccc
Q 011687 157 ISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKG 236 (479)
Q Consensus 157 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 236 (479)
.+..... ......+|+++.++..+++.+..... ...+..+.+.......++.+++|||.++|+...+ ++++
T Consensus 160 ~~~~~~~---~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~--~l~~-- 230 (451)
T PLN03004 160 TPGKNLK---DIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIK--AITE-- 230 (451)
T ss_pred ccccccc---cCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHH--HHHh--
Confidence 1100000 11123478877777788887554321 2233444444555567889999999999998887 7765
Q ss_pred cccC-CCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEE
Q 011687 237 ATLC-RPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWV 315 (479)
Q Consensus 237 ~~~~-~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~ 315 (479)
.+ .++++.|||+...... .... ...+.+|.+||+.++++++||||||| ....+.+++.+|+.+|+.++++|||+
T Consensus 231 --~~~~~~v~~vGPl~~~~~~-~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS-~~~~~~~q~~ela~gL~~s~~~FlW~ 305 (451)
T PLN03004 231 --ELCFRNIYPIGPLIVNGRI-EDRN-DNKAVSCLNWLDSQPEKSVVFLCFGS-LGLFSKEQVIEIAVGLEKSGQRFLWV 305 (451)
T ss_pred --cCCCCCEEEEeeeccCccc-cccc-cchhhHHHHHHHhCCCCceEEEEecc-cccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 22 2589999999753210 0011 12235699999988889999999999 88899999999999999999999999
Q ss_pred EcCCc--------CC-CCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccch
Q 011687 316 LGFAW--------RE-GLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQ 386 (479)
Q Consensus 316 ~~~~~--------~~-~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 386 (479)
+.... .. .+|+++.+++. +.++.+.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||
T Consensus 306 ~r~~~~~~~~~~~~~~~lp~gf~er~~-~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 306 VRNPPELEKTELDLKSLLPEGFLSRTE-DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred EcCCccccccccchhhhCChHHHHhcc-CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 98431 12 37888988886 2355556999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcceeeeC-----CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhH
Q 011687 387 FINCAYIVKMWKIGIRVN-----GFGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMN 447 (479)
Q Consensus 387 ~~nA~rv~~~~Gvg~~~~-----~~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~ 447 (479)
+.||+++++.+|+|+.++ .++.++|+++|+++|++++||+++++++++.+.+..+|||+++
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999975389999985 2799999999999999999999999999999999999998764
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.1e-58 Score=462.78 Aligned_cols=434 Identities=21% Similarity=0.343 Sum_probs=329.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCC----CeEEEEcCCcccc----ccccC----CCCCCCeEEEeCCCCCCCCC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRG----FEPIVITPEFIHN----QITSS----MDPRSEISCMSIPDGLEKNE 76 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rG----h~V~~~~~~~~~~----~i~~~----~~~~~g~~~~~i~~~l~~~~ 76 (479)
.+.||+++|++++||++|++.||+.|+.+| +.|||++++...+ .+... .....++.+..+|++.....
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 467999999999999999999999999997 7899999865321 12210 00112599999997643222
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCC
Q 011687 77 PKDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGY 156 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (479)
......++..+...+...++++++++. .++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++.......
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l~--~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 159 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGLS--CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVA 159 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhcC--CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccccc
Confidence 223344555455567777877776651 146999999999999999999999999999999988887766654221100
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccc
Q 011687 157 ISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKG 236 (479)
Q Consensus 157 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 236 (479)
.+... ......+|+++.++..+++..+.... ...+..+........+++.+++|||.+||+.... +++...
T Consensus 160 ~~~~~-----~~~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~~~~~~ 230 (480)
T PLN00164 160 VEFEE-----MEGAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLA--AIADGR 230 (480)
T ss_pred Ccccc-----cCcceecCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHH--HHHhcc
Confidence 00000 00112377777777777776443221 1223334444455567889999999999998887 776510
Q ss_pred ---cccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeE
Q 011687 237 ---ATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFI 313 (479)
Q Consensus 237 ---~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~i 313 (479)
+.. .++++.|||+...... ......+++|.+||+.++++++||||||| ....+.+++.+++.+|+..+++||
T Consensus 231 ~~~~~~-~~~v~~vGPl~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS-~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 231 CTPGRP-APTVYPIGPVISLAFT---PPAEQPPHECVRWLDAQPPASVVFLCFGS-MGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred ccccCC-CCceEEeCCCcccccc---CCCccchHHHHHHHHhCCCCceEEEEecc-cccCCHHHHHHHHHHHHHcCCCEE
Confidence 000 1589999999743210 11123456799999998889999999999 888999999999999999999999
Q ss_pred EEEcCCc------------CCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecc
Q 011687 314 WVLGFAW------------REGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 314 w~~~~~~------------~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
|++.... ...+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~ 383 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPW 383 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeC
Confidence 9998431 1137788888887 777777 999999999999999999999999999999999999999
Q ss_pred cCccchhhHHHHHHHHhcceeeeC------C-CCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHcccccCCCchhHH
Q 011687 381 PVAGDQFINCAYIVKMWKIGIRVN------G-FGKRDIEDGLKKLKED-----SEMKHRLMNLYMRTMGDDGARARVMNN 448 (479)
Q Consensus 381 P~~~DQ~~nA~rv~~~~Gvg~~~~------~-~~~~~i~~~i~~vl~~-----~~~~~~a~~l~~~~~~~~~~g~~~~~~ 448 (479)
|+++||+.||+++++.+|+|+.+. + ++.++|.++|+++|.+ +.+|++|++++++++++..+|||++..
T Consensus 384 P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~ 463 (480)
T PLN00164 384 PLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAA 463 (480)
T ss_pred CccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999998754389999883 2 6899999999999954 458999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 011687 449 LTGFVDDLSKLT 460 (479)
Q Consensus 449 ~~~~~~~~~~~~ 460 (479)
++++++++....
T Consensus 464 l~~~v~~~~~~~ 475 (480)
T PLN00164 464 LQRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHHhcc
Confidence 999999887543
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-57 Score=459.41 Aligned_cols=436 Identities=22% Similarity=0.366 Sum_probs=319.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCC---eEEEEcCCccc-----cccccCCCCCCCeEEEeCCCCCCC-C-C--
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGF---EPIVITPEFIH-----NQITSSMDPRSEISCMSIPDGLEK-N-E-- 76 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh---~V~~~~~~~~~-----~~i~~~~~~~~g~~~~~i~~~l~~-~-~-- 76 (479)
++.||+++|++++||++|++.||+.|+.+|. .||++++.... ..+.......++++|..+|++... . .
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 4679999999999999999999999999994 46666643211 112111111236999999965421 1 0
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhc----c-C-CceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhh
Q 011687 77 PKDFFAIEKVIENIMPIHLERLINKINE----D-G-RVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPE 150 (479)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~-~-~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 150 (479)
.......+..+...+...+++.++++.. . . ++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 1111122333333456666666666521 1 1 35999999999999999999999999999999988887766654
Q ss_pred hhhcCCCCCCCCCCccccccccCCCC-CCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhh
Q 011687 151 MIKSGYISDTGSPQHLESTARFLPNQ-PMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQ 229 (479)
Q Consensus 151 ~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 229 (479)
.... ..+....... . ....+|++ ..++..+++...... ..+..+.+......+++.+++|||.+||+...+
T Consensus 162 ~~~~-~~~~~~~~~~-~-~~~~iPgl~~~l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~- 233 (475)
T PLN02167 162 RHRK-TASEFDLSSG-E-EELPIPGFVNSVPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNSFTELEPNAFD- 233 (475)
T ss_pred hccc-cccccccCCC-C-CeeECCCCCCCCChhhCchhhhCc----chHHHHHHHHHhhcccCEeeeccHHHHHHHHHH-
Confidence 2111 0000000000 0 11236776 345556665433221 113334444455677889999999999998887
Q ss_pred hhhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCC
Q 011687 230 QYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALG 309 (479)
Q Consensus 230 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~ 309 (479)
+++... .-.+++++|||++..............+.++.+||+.++++++||||||| ....+.+++.+++.+|+.++
T Consensus 234 -~l~~~~--~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS-~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 234 -YFSRLP--ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGS-LGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred -HHHhhc--ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecc-cccCCHHHHHHHHHHHHhCC
Confidence 664400 00268999999986432100000112235799999988888999999999 88889999999999999999
Q ss_pred CCeEEEEcCCc------CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCc
Q 011687 310 LPFIWVLGFAW------REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA 383 (479)
Q Consensus 310 ~~~iw~~~~~~------~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 383 (479)
++|||+++... ...+|+++.+++. +++++++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 310 ~~flw~~~~~~~~~~~~~~~lp~~~~er~~--~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEPLPEGFMDRVM--GRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred CcEEEEEecCcccccchhhhCChHHHHHhc--cCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99999997432 1237889988888 889999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHH-HHHHhcceeeeC--------C-CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHcccccCCCchhHHHHHH
Q 011687 384 GDQFINCAY-IVKMWKIGIRVN--------G-FGKRDIEDGLKKLKEDS-EMKHRLMNLYMRTMGDDGARARVMNNLTGF 452 (479)
Q Consensus 384 ~DQ~~nA~r-v~~~~Gvg~~~~--------~-~~~~~i~~~i~~vl~~~-~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~ 452 (479)
+||+.||++ ++. +|+|+.+. . ++.++|+++|+++|+++ +||++|++++++++++..+|||+++.++++
T Consensus 388 ~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~ 466 (475)
T PLN02167 388 AEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRF 466 (475)
T ss_pred ccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999987 566 99999873 2 79999999999999654 899999999999999999999999999999
Q ss_pred HHHHHhh
Q 011687 453 VDDLSKL 459 (479)
Q Consensus 453 ~~~~~~~ 459 (479)
|+++...
T Consensus 467 v~~i~~~ 473 (475)
T PLN02167 467 IDDLLGD 473 (475)
T ss_pred HHHHHhc
Confidence 9988754
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-57 Score=452.14 Aligned_cols=406 Identities=20% Similarity=0.317 Sum_probs=302.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeC--C--CCCCCCC--CCCHH--
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSI--P--DGLEKNE--PKDFF-- 81 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i--~--~~l~~~~--~~~~~-- 81 (479)
+.||+++|+++.||++|++.||+.|+++|++|||++++.+...+........++.+..+ + ++++.+. ...+.
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 57999999999999999999999999999999999998876666542111124555544 3 3455431 11121
Q ss_pred --HHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCC
Q 011687 82 --AIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISD 159 (479)
Q Consensus 82 --~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~ 159 (479)
..+......+...++++++++ ++|+||+| ++.|+..+|+++|||++.+++++++... +.+++.. ...
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~~----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~----~~~- 152 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRAL----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGG----KLG- 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcc----ccC-
Confidence 222222334555556666554 89999999 5789999999999999999999887654 3332210 000
Q ss_pred CCCCCccccccccCCCCCC----CCCCCCCcccCCCccchhHHHHHHHHH-hhhcCCceEEEcCchhhhhhhhhhhhhcc
Q 011687 160 TGSPQHLESTARFLPNQPM----LSTEDLPWLIGTPAARKSRFKFWSRTL-ERSRNLKWLLVNSFPEEYMDDIKQQYHHS 234 (479)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 234 (479)
..+|+++. ++..+++.+. .....+..+.... ....+++.+++|||.+||+...+ +++.
T Consensus 153 -----------~~~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~--~~~~ 215 (442)
T PLN02208 153 -----------VPPPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCD--YISR 215 (442)
T ss_pred -----------CCCCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHH--HHHh
Confidence 00233322 2233333220 1112233333322 23467889999999999998887 7766
Q ss_pred cccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEE
Q 011687 235 KGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIW 314 (479)
Q Consensus 235 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw 314 (479)
.+.++++.|||++.... ...+.++++.+|||.++++++||||||| ...++.+++.+++.+++..+.+++|
T Consensus 216 ----~~~~~v~~vGpl~~~~~-----~~~~~~~~~~~wLd~~~~~sVvyvSfGS-~~~l~~~q~~e~~~~l~~s~~pf~w 285 (442)
T PLN02208 216 ----QYHKKVLLTGPMFPEPD-----TSKPLEEQWSHFLSGFPPKSVVFCSLGS-QIILEKDQFQELCLGMELTGLPFLI 285 (442)
T ss_pred ----hcCCCEEEEeecccCcC-----CCCCCHHHHHHHHhcCCCCcEEEEeccc-cccCCHHHHHHHHHHHHhCCCcEEE
Confidence 45689999999986432 1122356799999988889999999999 8888999999999998888899999
Q ss_pred EEcCCc-----CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhH
Q 011687 315 VLGFAW-----REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFIN 389 (479)
Q Consensus 315 ~~~~~~-----~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~n 389 (479)
++.... ...+|+++.+++. +.|+.+.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.|
T Consensus 286 v~r~~~~~~~~~~~lp~~f~~r~~-~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~n 364 (442)
T PLN02208 286 AVKPPRGSSTVQEGLPEGFEERVK-GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLF 364 (442)
T ss_pred EEeCCCcccchhhhCCHHHHHHHh-cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHH
Confidence 987431 2358889888876 2345555999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceeeeCC-----CCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHh
Q 011687 390 CAYIVKMWKIGIRVNG-----FGKRDIEDGLKKLKEDS-----EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSK 458 (479)
Q Consensus 390 A~rv~~~~Gvg~~~~~-----~~~~~i~~~i~~vl~~~-----~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (479)
|+++++++|+|+.++. ++.++|.++|+++|+++ ++|++++++++++.+ +||++..++++++++..
T Consensus 365 a~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 365 TRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 9987665899999953 89999999999999654 499999999999854 57899999999998854
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.2e-57 Score=448.35 Aligned_cols=427 Identities=21% Similarity=0.367 Sum_probs=324.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEcCCcccccc--ccCCC---CCCCeEEEeCCCCCCCCC-C--CCH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSR-GFEPIVITPEFIHNQI--TSSMD---PRSEISCMSIPDGLEKNE-P--KDF 80 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~i--~~~~~---~~~g~~~~~i~~~l~~~~-~--~~~ 80 (479)
+.||+++|++++||++|++.||+.|+.+ |..||+++++.....+ ..... ...++++..+|.+..++. . .+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 5699999999999999999999999977 9999999876533222 10000 112589999985432211 1 133
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCC-cEeEcchhHHHHHHHhhhhhhhhcCCCCC
Q 011687 81 FAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVP-AAGFWPAMLATYCLIDAIPEMIKSGYISD 159 (479)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~~~~~~~~p~ 159 (479)
...+......+...++++++++.. ++++||+|.+.+|+..+|+++||| .+.++++.++....+.++|..... .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~--~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~--~~~ 158 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMKR--KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV--VEG 158 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcCC--CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc--ccc
Confidence 323333334577888888877632 689999999999999999999999 588888887777666665542211 011
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhccccc--
Q 011687 160 TGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGA-- 237 (479)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~-- 237 (479)
... .. . ....+|+++.++..+++..+.... ...+..+.+......+++.+++|||.+||+.... ++++.-+
T Consensus 159 ~~~-~~-~-~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~--~l~~~~~~~ 231 (470)
T PLN03015 159 EYV-DI-K-EPLKIPGCKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLA--ALREDMELN 231 (470)
T ss_pred ccC-CC-C-CeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH--HHHhhcccc
Confidence 000 00 1 112478887788888876443221 1224444455555678999999999999988887 6654100
Q ss_pred ccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEc
Q 011687 238 TLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLG 317 (479)
Q Consensus 238 ~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~ 317 (479)
....++++.|||+..... . ...++++.+|||.++++++||||||| ...++.++..+++.+|+.++++|||++.
T Consensus 232 ~~~~~~v~~VGPl~~~~~-----~-~~~~~~~~~WLd~~~~~sVvyvsFGS-~~~~~~~q~~ela~gl~~s~~~FlWv~r 304 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNV-----H-VEKRNSIFEWLDKQGERSVVYVCLGS-GGTLTFEQTVELAWGLELSGQRFVWVLR 304 (470)
T ss_pred cccCCceEEecCCCCCcc-----c-ccchHHHHHHHHhCCCCCEEEEECCc-CCcCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 001256999999984321 1 12234799999988889999999999 8999999999999999999999999996
Q ss_pred CC-------------cCCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCc
Q 011687 318 FA-------------WREGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA 383 (479)
Q Consensus 318 ~~-------------~~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 383 (479)
.. ....+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~ 382 (470)
T PLN03015 305 RPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY 382 (470)
T ss_pred cCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccc
Confidence 31 11248889998887 888766 999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcceeeeC-----C-CCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHcccccCCCchhHHHHHH
Q 011687 384 GDQFINCAYIVKMWKIGIRVN-----G-FGKRDIEDGLKKLKE-----DSEMKHRLMNLYMRTMGDDGARARVMNNLTGF 452 (479)
Q Consensus 384 ~DQ~~nA~rv~~~~Gvg~~~~-----~-~~~~~i~~~i~~vl~-----~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~ 452 (479)
+||+.||+++++.+|+|+.+. . ++.++|+++|+++|+ .+++|+||++++++++++..+|||+++.++++
T Consensus 383 ~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~ 462 (470)
T PLN03015 383 AEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEW 462 (470)
T ss_pred cchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999854499999994 2 899999999999994 36899999999999999999999999999999
Q ss_pred HHHH
Q 011687 453 VDDL 456 (479)
Q Consensus 453 ~~~~ 456 (479)
+..+
T Consensus 463 ~~~~ 466 (470)
T PLN03015 463 AKRC 466 (470)
T ss_pred HHhc
Confidence 9865
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.3e-57 Score=458.64 Aligned_cols=429 Identities=26% Similarity=0.445 Sum_probs=304.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCC----CC----CeEEEeCC---CCCCCC--C
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDP----RS----EISCMSIP---DGLEKN--E 76 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~----~~----g~~~~~i~---~~l~~~--~ 76 (479)
+.||+++|+|++||++|++.||+.|+.||++|||++++.+...++..... .. .+...++| .++++. .
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 57999999999999999999999999999999999999876555431110 01 34455555 345532 0
Q ss_pred C--------CCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhh
Q 011687 77 P--------KDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAI 148 (479)
Q Consensus 77 ~--------~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 148 (479)
. .....++..+.. ....+.+.++++..+.++|+||+|.+++|+..+|+++|||.+.+++++++.......+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred ccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 0 011222333332 2233434444432223899999999999999999999999999999887666543332
Q ss_pred hhhhhcCCCCCCCCCCccccccccCCCCC---CCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhh
Q 011687 149 PEMIKSGYISDTGSPQHLESTARFLPNQP---MLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMD 225 (479)
Q Consensus 149 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 225 (479)
.........+ .. .. ...+|+++ .+...+++.. .........+........+.+.+++|++.++|.+
T Consensus 164 ~~~~~~~~~~--~~----~~-~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 164 RVHKPQKKVA--SS----SE-PFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HhcccccccC--CC----Cc-eeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 2110000111 00 00 01244443 1222222221 1111112222233334567889999999999988
Q ss_pred hhhhhhhcccccccCCCceeEeccccccccc-c----CCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHH
Q 011687 226 DIKQQYHHSKGATLCRPKVLLVGPLSKHATI-A----KNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKT 300 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~-~----~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~ 300 (479)
..+ ++++ .....+++|||+...... . ........++++.+||+.++++++||||||| ....+.+++.+
T Consensus 233 ~~~--~~~~----~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS-~~~~~~~~~~~ 305 (482)
T PLN03007 233 YAD--FYKS----FVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGS-VASFKNEQLFE 305 (482)
T ss_pred HHH--HHHh----ccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecC-CcCCCHHHHHH
Confidence 776 6655 334679999998643210 0 0001112346799999988889999999999 88888999999
Q ss_pred HHHHHHhCCCCeEEEEcCCc-----CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCc
Q 011687 301 LALTLEALGLPFIWVLGFAW-----REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGK 375 (479)
Q Consensus 301 l~~al~~~~~~~iw~~~~~~-----~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~Gv 375 (479)
++.+|+.++++|||+++... ...+|+++.+++. +.|+.+.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GV 384 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGL 384 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCC
Confidence 99999999999999998532 1247888877764 25666679999999999999999999999999999999999
Q ss_pred ceecccCccchhhHHHHHHHHhcceeee--------CC--CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHcccccCC
Q 011687 376 RLLCYPVAGDQFINCAYIVKMWKIGIRV--------NG--FGKRDIEDGLKKLKEDS---EMKHRLMNLYMRTMGDDGAR 442 (479)
Q Consensus 376 P~l~~P~~~DQ~~nA~rv~~~~Gvg~~~--------~~--~~~~~i~~~i~~vl~~~---~~~~~a~~l~~~~~~~~~~g 442 (479)
|+|++|+++||+.||+++++.+++|..+ +. ++.++|.++|+++|+++ +||+||++++++++++..+|
T Consensus 385 P~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 385 PMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred CeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999886434555443 22 89999999999999877 89999999999999999999
Q ss_pred CchhHHHHHHHHHHHh
Q 011687 443 ARVMNNLTGFVDDLSK 458 (479)
Q Consensus 443 ~~~~~~~~~~~~~~~~ 458 (479)
||++.+++++++.+..
T Consensus 465 GsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 465 GSSFNDLNKFMEELNS 480 (482)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999998764
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-56 Score=444.15 Aligned_cols=412 Identities=23% Similarity=0.361 Sum_probs=310.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCC--CCeEEEeCC--CCCCCC-C-----CC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPR--SEISCMSIP--DGLEKN-E-----PK 78 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~--~g~~~~~i~--~~l~~~-~-----~~ 78 (479)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.....+....... ..+.+.++| ++++.+ . ..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 3689999999999999999999999999999999999987654444310011 127777787 566543 1 11
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCC
Q 011687 79 DFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYIS 158 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p 158 (479)
.....+......+...++++++++ ++|+||+|. .+|+..+|+++|||.+.+++++++.+..+.. +. +..+
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~l~~~----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~----~~~~ 153 (453)
T PLN02764 84 TSADLLMSAMDLTRDQVEVVVRAV----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG----GELG 153 (453)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhC----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----ccCC
Confidence 111222222334566677777665 789999995 8999999999999999999999877766532 11 0100
Q ss_pred CCCCCCccccccccCCCCC----CCCCCCCCcccCC-CccchhHHHHHHHHH-hhhcCCceEEEcCchhhhhhhhhhhhh
Q 011687 159 DTGSPQHLESTARFLPNQP----MLSTEDLPWLIGT-PAARKSRFKFWSRTL-ERSRNLKWLLVNSFPEEYMDDIKQQYH 232 (479)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~ 232 (479)
..+|+++ .++..+++.+... ..........+.... .....++.+++|||.++|+...+ ++
T Consensus 154 ------------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~--~~ 219 (453)
T PLN02764 154 ------------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD--YI 219 (453)
T ss_pred ------------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH--HH
Confidence 0013332 1233333332110 000111122233333 44567889999999999999888 77
Q ss_pred cccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCe
Q 011687 233 HSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPF 312 (479)
Q Consensus 233 ~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~ 312 (479)
++ ..+++++.|||+..... .....++++.+|||.++++++||||||| ....+.+++.+++.+|+..+.+|
T Consensus 220 ~~----~~~~~v~~VGPL~~~~~-----~~~~~~~~cl~WLD~q~~~sVvyvsfGS-~~~~~~~q~~ela~gL~~s~~pf 289 (453)
T PLN02764 220 EK----HCRKKVLLTGPVFPEPD-----KTRELEERWVKWLSGYEPDSVVFCALGS-QVILEKDQFQELCLGMELTGSPF 289 (453)
T ss_pred Hh----hcCCcEEEeccCccCcc-----ccccchhHHHHHHhCCCCCceEEEeecc-cccCCHHHHHHHHHHHHhCCCCe
Confidence 65 33468999999975421 0011245799999999999999999999 88899999999999999999999
Q ss_pred EEEEcCCc-----CCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccch
Q 011687 313 IWVLGFAW-----REGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQ 386 (479)
Q Consensus 313 iw~~~~~~-----~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 386 (479)
+|++.... ...+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||++||+++|||+|++|++.||
T Consensus 290 lwv~r~~~~~~~~~~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ 367 (453)
T PLN02764 290 LVAVKPPRGSSTIQEALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQ 367 (453)
T ss_pred EEEEeCCCCCcchhhhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccch
Confidence 99998421 2358999999987 777777 999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcceeeeC-----CCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 387 FINCAYIVKMWKIGIRVN-----GFGKRDIEDGLKKLKEDS-----EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 387 ~~nA~rv~~~~Gvg~~~~-----~~~~~~i~~~i~~vl~~~-----~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
+.||+++++++|+|+.+. .++.++|.++++++|+++ ++|++++++++++++ |||++..++++++.+
T Consensus 368 ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~ 443 (453)
T PLN02764 368 VLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESL 443 (453)
T ss_pred HHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Confidence 999999965599999873 279999999999999663 399999999999976 699999999999998
Q ss_pred Hhhh
Q 011687 457 SKLT 460 (479)
Q Consensus 457 ~~~~ 460 (479)
....
T Consensus 444 ~~~~ 447 (453)
T PLN02764 444 QDLV 447 (453)
T ss_pred HHhc
Confidence 7654
No 20
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-56 Score=448.97 Aligned_cols=427 Identities=26% Similarity=0.387 Sum_probs=313.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCC--C--CCCeEEEeCC-----CCCCCC--CCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMD--P--RSEISCMSIP-----DGLEKN--EPK 78 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~--~--~~g~~~~~i~-----~~l~~~--~~~ 78 (479)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.....+..... . ...++|+.+| ++++++ ...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 5799999999999999999999999999999999999876444432110 0 1138888888 566653 111
Q ss_pred --CHHHHHHHHH---HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhh
Q 011687 79 --DFFAIEKVIE---NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIK 153 (479)
Q Consensus 79 --~~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 153 (479)
....++..+. ..+...+++++++. ..++++||+|.+.+|+..+|+++|||.+.+++++++....+.++.....
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~--~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA--KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc--CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 1112222222 23555666666542 1268999999999999999999999999999988777665433211100
Q ss_pred cCCCCCCCCCCccccccccCCCCCC---CCCCCCCcccCCCccchhHHHHHHHHHh-hhcCCceEEEcCchhhhhhhhhh
Q 011687 154 SGYISDTGSPQHLESTARFLPNQPM---LSTEDLPWLIGTPAARKSRFKFWSRTLE-RSRNLKWLLVNSFPEEYMDDIKQ 229 (479)
Q Consensus 154 ~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~ 229 (479)
..+... ......+|+++. ++..+++..+.... .+..+...+. ....++.+++|||.+||+...+
T Consensus 166 --~~~~~~-----~~~~~~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~- 233 (491)
T PLN02534 166 --HLSVSS-----DSEPFVVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSFNELEHGCAE- 233 (491)
T ss_pred --cccCCC-----CCceeecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHH-
Confidence 111000 111123566542 45555554332211 1222332222 1245679999999999999888
Q ss_pred hhhcccccccCCCceeEeccccccccccC-C---CCCc-ccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHH
Q 011687 230 QYHHSKGATLCRPKVLLVGPLSKHATIAK-N---PSLW-EEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALT 304 (479)
Q Consensus 230 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~-~---~~~~-~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~a 304 (479)
++++ .++++++.|||+........ . .... ..+++|.+||+.++++++||||||| .....++++.+++.+
T Consensus 234 -~l~~----~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS-~~~~~~~q~~e~a~g 307 (491)
T PLN02534 234 -AYEK----AIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGS-LCRLVPSQLIELGLG 307 (491)
T ss_pred -HHHh----hcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecc-cccCCHHHHHHHHHH
Confidence 7766 44578999999974211000 0 0011 1234699999998889999999999 889999999999999
Q ss_pred HHhCCCCeEEEEcCCc------CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCccee
Q 011687 305 LEALGLPFIWVLGFAW------REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLL 378 (479)
Q Consensus 305 l~~~~~~~iw~~~~~~------~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l 378 (479)
|+.++.+|||++..+. ...+|+++.+++. +.++.+.+|+||.+||+|+++++||||||+||++||+++|||+|
T Consensus 308 l~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~-~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v 386 (491)
T PLN02534 308 LEASKKPFIWVIKTGEKHSELEEWLVKENFEERIK-GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMI 386 (491)
T ss_pred HHhCCCCEEEEEecCccccchhhhcCchhhHHhhc-cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEE
Confidence 9999999999998421 1135788887754 14555569999999999999999999999999999999999999
Q ss_pred cccCccchhhHHHHHHHHhcceeeeC---------------CCCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHccc
Q 011687 379 CYPVAGDQFINCAYIVKMWKIGIRVN---------------GFGKRDIEDGLKKLKE-----DSEMKHRLMNLYMRTMGD 438 (479)
Q Consensus 379 ~~P~~~DQ~~nA~rv~~~~Gvg~~~~---------------~~~~~~i~~~i~~vl~-----~~~~~~~a~~l~~~~~~~ 438 (479)
++|+++||+.||+++++.+|+|+.+. .++.++|+++|+++|. .+++|+||++++++++++
T Consensus 387 ~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~A 466 (491)
T PLN02534 387 TWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKA 466 (491)
T ss_pred eccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876699999772 1689999999999995 368999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHH
Q 011687 439 DGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~ 457 (479)
+.+|||++..+++||+.+.
T Consensus 467 v~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 467 MELGGSSHINLSILIQDVL 485 (491)
T ss_pred hcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999886
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-56 Score=442.88 Aligned_cols=406 Identities=22% Similarity=0.357 Sum_probs=300.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC----CCCCCC--CCCCH---
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP----DGLEKN--EPKDF--- 80 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~----~~l~~~--~~~~~--- 80 (479)
+.||+++|++++||++|++.||+.|+++|++||+++++.+...+........++.+..++ ++++.+ ...++
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~ 83 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNS 83 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhh
Confidence 579999999999999999999999999999999999987665554321111247775443 455543 11111
Q ss_pred -HHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCC
Q 011687 81 -FAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISD 159 (479)
Q Consensus 81 -~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~ 159 (479)
...+..........++++++.. +||+||+|. ++|+..+|+++|||.+.++++++.....+.+ +.. .... +
T Consensus 84 ~~~~~~~a~~~l~~~l~~~L~~~----~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~-~~~~-~- 154 (446)
T PLN00414 84 TKKPIFDAMDLLRDQIEAKVRAL----KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA-ELGF-P- 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh-hcCC-C-
Confidence 1111122222333444444333 789999995 8999999999999999999999887776543 211 0000 0
Q ss_pred CCCCCccccccccCCCCCC----CCCCC--CCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhc
Q 011687 160 TGSPQHLESTARFLPNQPM----LSTED--LPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHH 233 (479)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 233 (479)
+|+++. +...+ ++.++.. ....+.+......+++.+++|||.+||+...+ +++
T Consensus 155 -------------~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~--~~~ 213 (446)
T PLN00414 155 -------------PPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCD--FIE 213 (446)
T ss_pred -------------CCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHH--HHH
Confidence 122211 11111 1111110 11223333344567889999999999998887 776
Q ss_pred ccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeE
Q 011687 234 SKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFI 313 (479)
Q Consensus 234 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~i 313 (479)
. .++++++.|||+..... .......++++.+|||.++++++||||||| ....+.+++.+++.+|+..+.+|+
T Consensus 214 ~----~~~~~v~~VGPl~~~~~---~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS-~~~~~~~q~~e~a~gL~~s~~~Fl 285 (446)
T PLN00414 214 R----QCQRKVLLTGPMLPEPQ---NKSGKPLEDRWNHWLNGFEPGSVVFCAFGT-QFFFEKDQFQEFCLGMELTGLPFL 285 (446)
T ss_pred H----hcCCCeEEEcccCCCcc---cccCcccHHHHHHHHhcCCCCceEEEeecc-cccCCHHHHHHHHHHHHHcCCCeE
Confidence 5 34467999999975321 001112235689999999999999999999 999999999999999999999999
Q ss_pred EEEcCCc-----CCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh
Q 011687 314 WVLGFAW-----REGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF 387 (479)
Q Consensus 314 w~~~~~~-----~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 387 (479)
|++.... ...+|+++.+++. ++..++ +|+||.+||+|+++++|||||||||++||+++|||+|++|++.||+
T Consensus 286 wvvr~~~~~~~~~~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 286 IAVMPPKGSSTVQEALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred EEEecCCCcccchhhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 9997521 2258999999998 888888 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcceeeeCC-----CCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHH
Q 011687 388 INCAYIVKMWKIGIRVNG-----FGKRDIEDGLKKLKEDS-----EMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLS 457 (479)
Q Consensus 388 ~nA~rv~~~~Gvg~~~~~-----~~~~~i~~~i~~vl~~~-----~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (479)
.||+++++++|+|+.+.. ++.++|+++++++|+++ ++|++++++++++.+. ||++ ..++++++++.
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~s-s~l~~~v~~~~ 439 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLLS-GYADKFVEALE 439 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCcH-HHHHHHHHHHH
Confidence 999999644999999942 89999999999999653 4999999999998553 5533 44899999885
Q ss_pred hh
Q 011687 458 KL 459 (479)
Q Consensus 458 ~~ 459 (479)
..
T Consensus 440 ~~ 441 (446)
T PLN00414 440 NE 441 (446)
T ss_pred Hh
Confidence 43
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.7e-55 Score=445.24 Aligned_cols=427 Identities=18% Similarity=0.189 Sum_probs=301.2
Q ss_pred CEEEE-ecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCC-----CCC------C
Q 011687 11 NKILM-VPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEK-----NEP------K 78 (479)
Q Consensus 11 ~~i~~-~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~-----~~~------~ 78 (479)
.||++ +|.++.||+.-+.+|+++|++|||+||++++.. ..... ..+..+++.+.++...+. ... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~--~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTL--RVYYA-SHLCGNITEIDASLSVEYFKKLVKSSAVFRKRG 97 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccc--ccccc-cCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhh
Confidence 45664 488999999999999999999999999998853 11111 002255666555411110 000 0
Q ss_pred ---CH----HHHHHHHHHhchHHHH--HHHHHhh-ccCCceEEEeCCCcccHHHHHHHh-CCCcEeEcchhHHHHHH-Hh
Q 011687 79 ---DF----FAIEKVIENIMPIHLE--RLINKIN-EDGRVACVVVDLLASSAIGVACRC-GVPAAGFWPAMLATYCL-ID 146 (479)
Q Consensus 79 ---~~----~~~~~~~~~~~~~~l~--~~l~~l~-~~~~~D~vi~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~-~~ 146 (479)
+. ......+...|...+. ++.+.++ .+.++|+||+|.+..|+..+|+.+ ++|.|.+++........ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~ 177 (507)
T PHA03392 98 VVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETM 177 (507)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhh
Confidence 00 0111222334444442 2233333 233899999999889999999999 99998887755443322 11
Q ss_pred hhhhhhhcCCCCCCCCCCcc-ccccccCCCCCCCCCCCCCcccCCCccchhHHHHHH-----HHHhhhcCCceEEEcCch
Q 011687 147 AIPEMIKSGYISDTGSPQHL-ESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWS-----RTLERSRNLKWLLVNSFP 220 (479)
Q Consensus 147 ~~p~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~s~~ 220 (479)
. +.+...++.|.......+ ++++.++.+..........+... .......++.+. ...+..++.+.+++|+.+
T Consensus 178 g-g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~-~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 178 G-AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLL-ADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred c-cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 1 122223355543221111 55555554432110000000000 011111222221 011233678899999999
Q ss_pred hhhhhhhhhhhhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccc---cCCHHH
Q 011687 221 EEYMDDIKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVS---PIGEEK 297 (479)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~---~~~~~~ 297 (479)
.+++|++ +++++++|||++.++. ...+.++++.+|++.+ ++++||||||| .. ..+.++
T Consensus 256 ~~d~~rp------------~~p~v~~vGgi~~~~~-----~~~~l~~~l~~fl~~~-~~g~V~vS~GS-~~~~~~~~~~~ 316 (507)
T PHA03392 256 VFDNNRP------------VPPSVQYLGGLHLHKK-----PPQPLDDYLEEFLNNS-TNGVVYVSFGS-SIDTNDMDNEF 316 (507)
T ss_pred cccCCCC------------CCCCeeeecccccCCC-----CCCCCCHHHHHHHhcC-CCcEEEEECCC-CCcCCCCCHHH
Confidence 9998775 4899999999987532 2234567788999954 56899999999 54 367899
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcce
Q 011687 298 VKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRL 377 (479)
Q Consensus 298 ~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 377 (479)
++.+++|+++++++|||++++.... ...+ +||++.+|+||.+||+|+.+++||||||+||+.||+++|||+
T Consensus 317 ~~~~l~a~~~l~~~viw~~~~~~~~-------~~~p--~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~ 387 (507)
T PHA03392 317 LQMLLRTFKKLPYNVLWKYDGEVEA-------INLP--ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPM 387 (507)
T ss_pred HHHHHHHHHhCCCeEEEEECCCcCc-------ccCC--CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCE
Confidence 9999999999999999999854321 1223 899999999999999999999999999999999999999999
Q ss_pred ecccCccchhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHH
Q 011687 378 LCYPVAGDQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDD 455 (479)
Q Consensus 378 l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~ 455 (479)
|++|+++||+.||+|+++ +|+|+.++. ++.++|.++|+++|+|++||++|+++++.+++. +...++++++|
T Consensus 388 v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~------p~~~~~~av~~ 460 (507)
T PHA03392 388 VGLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ------PMTPLHKAIWY 460 (507)
T ss_pred EECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC------CCCHHHHHHHH
Confidence 999999999999999999 999999976 899999999999999999999999999999985 44678999999
Q ss_pred HHhhhcCC-cceecccCCCcccc
Q 011687 456 LSKLTRND-HQFHLKDVDHDHLF 477 (479)
Q Consensus 456 ~~~~~~~~-~~~~~~~~~~~~~~ 477 (479)
+|+..||+ ++.|+++.+++.-|
T Consensus 461 iE~v~r~~~g~~~lr~~~~~l~~ 483 (507)
T PHA03392 461 TEHVIRNKHGNTSLKTKAANVSY 483 (507)
T ss_pred HHHHHhCCCCcccccccccCCCH
Confidence 99999999 99999999887643
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.9e-56 Score=459.06 Aligned_cols=423 Identities=23% Similarity=0.278 Sum_probs=227.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC----CCCCH-------
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN----EPKDF------- 80 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~----~~~~~------- 80 (479)
||+++|. ++||+.++..|+++|++|||+||++++... ..+.. .....+++..++.....+ .....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNP--SKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT--------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-ccccc--ccccceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 6778874 789999999999999999999999998542 12221 112455666666444331 11110
Q ss_pred -------HHHHHHH-------HHhchHHH--HHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHH
Q 011687 81 -------FAIEKVI-------ENIMPIHL--ERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCL 144 (479)
Q Consensus 81 -------~~~~~~~-------~~~~~~~l--~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 144 (479)
...+..+ ...|...+ .++++.++.. ++|++|+|.+..|+..+|+.+++|.+.+.++.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~ 156 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLS 156 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-ccccceEeeccchhHHHHHHhcCCeEEEecccccchhh
Confidence 0111110 11121111 1122222222 79999999988999999999999999865432211110
Q ss_pred HhhhhhhhhcCCCCCCCCCCc-cccccccCCCCCCCCC-CCCCc-ccCC-CccchhHHHHHHHHHhhhcCCceEEEcCch
Q 011687 145 IDAIPEMIKSGYISDTGSPQH-LESTARFLPNQPMLST-EDLPW-LIGT-PAARKSRFKFWSRTLERSRNLKWLLVNSFP 220 (479)
Q Consensus 145 ~~~~p~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 220 (479)
......+...++.|....... .++++.++.+...... ..... .... ...............+.+.+.+.+++|+.+
T Consensus 157 ~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~ 236 (500)
T PF00201_consen 157 SFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSHP 236 (500)
T ss_dssp CCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTEE
T ss_pred hhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhccc
Confidence 000001111223332211000 0333333333210000 00000 0000 000000000000001112345578899999
Q ss_pred hhhhhhhhhhhhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHH
Q 011687 221 EEYMDDIKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKT 300 (479)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~ 300 (479)
.++.|++. .|++++||+++.++. .+.++++.+|++...++++|||||||+....+.+..+.
T Consensus 237 ~ld~prp~------------~p~v~~vGgl~~~~~-------~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~ 297 (500)
T PF00201_consen 237 SLDFPRPL------------LPNVVEVGGLHIKPA-------KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKE 297 (500)
T ss_dssp E----HHH------------HCTSTTGCGC-S-----------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHH
T ss_pred cCcCCcch------------hhcccccCccccccc-------cccccccchhhhccCCCCEEEEecCcccchhHHHHHHH
Confidence 99988875 689999999987643 34456788999964688999999999333455666899
Q ss_pred HHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecc
Q 011687 301 LALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 301 l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
+++++++++++|||++++... .. ++ +|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++
T Consensus 298 ~~~~~~~~~~~~iW~~~~~~~----~~----l~--~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 298 IAEAFENLPQRFIWKYEGEPP----EN----LP--KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp HHHHHHCSTTEEEEEETCSHG----CH----HH--TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-
T ss_pred HHHHHhhCCCccccccccccc----cc----cc--ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCC
Confidence 999999999999999986322 22 23 899999999999999999999999999999999999999999999
Q ss_pred cCccchhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHh
Q 011687 381 PVAGDQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSK 458 (479)
Q Consensus 381 P~~~DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 458 (479)
|+++||+.||+++++ .|+|+.++. +|.++|.++|+++|+|++|++||+++++.+++. +..+.+++++|+|+
T Consensus 368 P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~------p~~p~~~~~~~ie~ 440 (500)
T PF00201_consen 368 PLFGDQPRNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR------PISPLERAVWWIEY 440 (500)
T ss_dssp GCSTTHHHHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT----------------------
T ss_pred CCcccCCccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHH
Confidence 999999999999999 999999986 999999999999999999999999999999986 67889999999999
Q ss_pred hhcCCcceecccCCCcc
Q 011687 459 LTRNDHQFHLKDVDHDH 475 (479)
Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (479)
..|+++..||+|.+.+.
T Consensus 441 v~~~~~~~~l~~~~~~l 457 (500)
T PF00201_consen 441 VARHGGAPHLRSPARDL 457 (500)
T ss_dssp -----------------
T ss_pred HHhcCCCcccCChhhcC
Confidence 99999999999998764
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.2e-42 Score=347.61 Aligned_cols=359 Identities=19% Similarity=0.237 Sum_probs=252.4
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-CC-----CCHHHHHHHHHH
Q 011687 16 VPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN-EP-----KDFFAIEKVIEN 89 (479)
Q Consensus 16 ~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~-~~-----~~~~~~~~~~~~ 89 (479)
+.+|+.||++|++.||++|+++||+|++++++.+.+.+++ .|+.|.+++..+... .. .+....+..+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLD 75 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCccccccccccCcchHHHHHHHHH
Confidence 3579999999999999999999999999999999999988 899999998654431 10 233444444444
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCccccc
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLEST 169 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 169 (479)
.+...+.++.+.+ ...+||+||+|.+++++..+|+.+|||+|.+++.+.... .++... .|.. ...
T Consensus 76 ~~~~~~~~l~~~~-~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----~~~~------~~~ 140 (392)
T TIGR01426 76 EAEDVLPQLEEAY-KGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----SPAG------EGS 140 (392)
T ss_pred HHHHHHHHHHHHh-cCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc----cccc------hhh
Confidence 4444444444333 223899999999888999999999999998865432110 011000 0000 000
Q ss_pred cccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHh---------hhcCCceEEEcCchhhhhhhhhhhhhcccccccC
Q 011687 170 ARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLE---------RSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLC 240 (479)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~ 240 (479)
+...+ ...+. ........+.+.+.+. ........+..+.+.++++.. .|
T Consensus 141 ~~~~~----~~~~~-------~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----------~~ 198 (392)
T TIGR01426 141 AEEGA----IAERG-------LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGE-----------TF 198 (392)
T ss_pred hhhhc----cccch-------hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcc-----------cc
Confidence 00000 00000 0001111122222111 011222245555555554322 57
Q ss_pred CCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCc
Q 011687 241 RPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAW 320 (479)
Q Consensus 241 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~ 320 (479)
+++++++||+..... . ...|.....++++|||+||| ......+.++.+++++.+.+.+++|.++...
T Consensus 199 ~~~~~~~Gp~~~~~~-----~-------~~~~~~~~~~~~~v~vs~Gs-~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~ 265 (392)
T TIGR01426 199 DDSFTFVGPCIGDRK-----E-------DGSWERPGDGRPVVLISLGT-VFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV 265 (392)
T ss_pred CCCeEEECCCCCCcc-----c-------cCCCCCCCCCCCEEEEecCc-cCCCCHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 889999999876422 0 11366656678999999999 6666667889999999999999999887542
Q ss_pred CCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcce
Q 011687 321 REGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIG 400 (479)
Q Consensus 321 ~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg 400 (479)
.. +. ....+ +|+.+.+|+||.++|+++++ ||||||+||+.||+++|+|+|++|...||+.||+++++ +|+|
T Consensus 266 ~~---~~-~~~~~--~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g 336 (392)
T TIGR01426 266 DP---AD-LGELP--PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLG 336 (392)
T ss_pred Ch---hH-hccCC--CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCE
Confidence 11 11 12234 89999999999999999988 99999999999999999999999999999999999999 9999
Q ss_pred eeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHccc
Q 011687 401 IRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGD 438 (479)
Q Consensus 401 ~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~ 438 (479)
..+.. +++++|.++|+++|+|++|+++++++++.+.+.
T Consensus 337 ~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 337 RHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA 376 (392)
T ss_pred EEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 98864 899999999999999999999999999999975
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.3e-42 Score=348.90 Aligned_cols=360 Identities=18% Similarity=0.174 Sum_probs=246.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-----C--------C
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN-----E--------P 77 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~-----~--------~ 77 (479)
|||+|+++|+.||++|+++||++|++|||+|++++++.++..+++ .|++|.++++..... . .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhcccccccch
Confidence 799999999999999999999999999999999999988888888 899999988644321 0 0
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCC
Q 011687 78 KDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYI 157 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (479)
.........+...+...+.++.+.++ ..+||+||+|.+.+++..+|+++|||++.+++++..+.... +.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~---~~~------ 145 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAAR-DWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF---PPP------ 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---CCc------
Confidence 11122233333444444444444332 34999999999889999999999999999977643321100 000
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCcccCC----CccchhHHHHHHHHHhhhc------CCceEEEcCchhhhhhhh
Q 011687 158 SDTGSPQHLESTARFLPNQPMLSTEDLPWLIGT----PAARKSRFKFWSRTLERSR------NLKWLLVNSFPEEYMDDI 227 (479)
Q Consensus 158 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~l~~s~~~l~~~~~ 227 (479)
. . . .....+.... ............+.+.... .....++...+.+..+.+
T Consensus 146 -~--~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 146 -L--G----------------R-ANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred -c--c----------------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 0 0 0 0000000000 0000111111111111100 011222222222222221
Q ss_pred hhhhhcccccccCCCceeEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCcccc-CCHHHHHHHHHHH
Q 011687 228 KQQYHHSKGATLCRPKVLLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSP-IGEEKVKTLALTL 305 (479)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~-~~~~~~~~l~~al 305 (479)
.|+++..++| ++...+ .....+.++..|++. ++++|||+||| ... ...+.+..+++++
T Consensus 206 -----------~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~--~~~~v~v~~Gs-~~~~~~~~~~~~~~~a~ 265 (401)
T cd03784 206 -----------DWPRFDLVTGYGFRDVP------YNGPPPPELWLFLAA--GRPPVYVGFGS-MVVRDPEALARLDVEAV 265 (401)
T ss_pred -----------CccccCcEeCCCCCCCC------CCCCCCHHHHHHHhC--CCCcEEEeCCC-CcccCHHHHHHHHHHHH
Confidence 4567777886 433222 122334556678873 57799999999 654 4567888899999
Q ss_pred HhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccc
Q 011687 306 EALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGD 385 (479)
Q Consensus 306 ~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 385 (479)
...+.+++|.++...... ...+ +|+++.+|+||.++|+++++ ||||||+||+.||+++|||+|++|+..|
T Consensus 266 ~~~~~~~i~~~g~~~~~~------~~~~--~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~d 335 (401)
T cd03784 266 ATLGQRAILSLGWGGLGA------EDLP--DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGD 335 (401)
T ss_pred HHcCCeEEEEccCccccc------cCCC--CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCC
Confidence 999999999998643221 1223 89999999999999999998 9999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcc
Q 011687 386 QFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMG 437 (479)
Q Consensus 386 Q~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~ 437 (479)
|+.||+++++ +|+|..++. ++.++|.+++++++++ .++++++++++.+++
T Consensus 336 Q~~~a~~~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 336 QPFWAARVAE-LGAGPALDPRELTAERLAAALRRLLDP-PSRRRAAALLRRIRE 387 (401)
T ss_pred cHHHHHHHHH-CCCCCCCCcccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHh
Confidence 9999999999 999999865 7999999999999974 566778888888765
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.1e-42 Score=359.01 Aligned_cols=425 Identities=27% Similarity=0.371 Sum_probs=276.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCC--------eEEEeCCCCCCCCCCC---
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSE--------ISCMSIPDGLEKNEPK--- 78 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g--------~~~~~i~~~l~~~~~~--- 78 (479)
..+++++++|++||++|+..+|+.|+++||+||++++.......... ..... +.+...+++++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 35777888889999999999999999999999999997643333220 00001 1111111122221100
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHh--hccCCceEEEeCCCcccHHHHHHHhC-CCcEeEcchhHHHHHHHhhhhhhhhcC
Q 011687 79 DFFAIEKVIENIMPIHLERLINKI--NEDGRVACVVVDLLASSAIGVACRCG-VPAAGFWPAMLATYCLIDAIPEMIKSG 155 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l--~~~~~~D~vi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (479)
........+...|...+.+....+ ....++|++|+|.+..+...+|.... +|...+.+............+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~---- 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS---- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----
Confidence 111113344455666666644443 22224999999997666666666664 88888776665554432211111
Q ss_pred CCCCCCCCCc--cccccccCCCCCCCCCCCCCcccCCC---ccchhHHHHH--------HHHHhhhcCCceEEEcCchhh
Q 011687 156 YISDTGSPQH--LESTARFLPNQPMLSTEDLPWLIGTP---AARKSRFKFW--------SRTLERSRNLKWLLVNSFPEE 222 (479)
Q Consensus 156 ~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~l~~s~~~l 222 (479)
+.|....... .+....+.++. ....+....... .........+ ........+.+..++|+.+.+
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPNL---IKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred ccCcccCccccccCcHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 2332211000 01111111110 000000000000 0000000000 011123345557777777765
Q ss_pred hh-hhhhhhhhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCC--cEEEEEeCCccc---cCCHH
Q 011687 223 YM-DDIKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPN--SVIYISFGSWVS---PIGEE 296 (479)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~Vyvs~Gs~~~---~~~~~ 296 (479)
+. +.+ ..+++++|||+..... ..+.. ...+|++..++. ++||||||| .+ .++++
T Consensus 237 ~~~~~~------------~~~~v~~IG~l~~~~~-----~~~~~--~~~~wl~~~~~~~~~vvyvSfGS-~~~~~~lp~~ 296 (496)
T KOG1192|consen 237 DFEPRP------------LLPKVIPIGPLHVKDS-----KQKSP--LPLEWLDILDESRHSVVYISFGS-MVNSADLPEE 296 (496)
T ss_pred CCCCCC------------CCCCceEECcEEecCc-----ccccc--ccHHHHHHHhhccCCeEEEECCc-ccccccCCHH
Confidence 54 322 3689999999998733 11111 234676654444 899999999 76 79999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHh-hcccCccceEeccchhHHHHHHHhC
Q 011687 297 KVKTLALTLEAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKV-LQHNAVGFYLTHCGWNSTMEAIQSG 374 (479)
Q Consensus 297 ~~~~l~~al~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~I~HgG~~s~~eal~~G 374 (479)
+...++.+++.+ +++|+|++.......+++++.++.+ +||.+.+|+||.++ |.|+++++||||||+|||+|++++|
T Consensus 297 ~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~--~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~G 374 (496)
T KOG1192|consen 297 QKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGR--GNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSG 374 (496)
T ss_pred HHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCc--CceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcC
Confidence 999999999999 8889999986533223333332212 68888899999998 5999999999999999999999999
Q ss_pred cceecccCccchhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHH
Q 011687 375 KRLLCYPVAGDQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGF 452 (479)
Q Consensus 375 vP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~ 452 (479)
||+|++|+++||+.||+++++ .|.|..+.+ ++.+.+.+++.+++++++|+++++++++..++. +..+ +.+
T Consensus 375 vP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~------p~~~-~~~ 446 (496)
T KOG1192|consen 375 VPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQ------PISP-ELA 446 (496)
T ss_pred CceecCCccccchhHHHHHHh-CCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcC------CCCH-HHH
Confidence 999999999999999999999 677766654 666669999999999999999999999999986 5678 999
Q ss_pred HHHHHhhhcCCcceecccCC
Q 011687 453 VDDLSKLTRNDHQFHLKDVD 472 (479)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (479)
+++.+...|++++.|+++..
T Consensus 447 ~~~~e~~~~~~~~~~l~~~~ 466 (496)
T KOG1192|consen 447 VKWVEFVARHGGAKHLKEAA 466 (496)
T ss_pred HHHHHHHHhcCCCcccCccc
Confidence 99999999999999999883
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-41 Score=330.50 Aligned_cols=367 Identities=21% Similarity=0.219 Sum_probs=238.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCC-CCCCCHHHHHHH--
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEK-NEPKDFFAIEKV-- 86 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~-~~~~~~~~~~~~-- 86 (479)
+|||+|+..|+.||++|+++|+++|.++||+|+|+|++.+++.+++ .|+.|..++..... ....+.....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-----ag~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-----AGLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-----hCcceeeccccCChhhhhhhhhhccchhH
Confidence 4899999999999999999999999999999999999999999998 88777777754221 111111111111
Q ss_pred -HHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHh-hhhhhhhcCCCCCCCCCC
Q 011687 87 -IENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLID-AIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 87 -~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~p~~~~~~~~p~~~~~~ 164 (479)
..........+.++-+.+. .+|+++.|.....+ .+++.+++|++.............. ..+.....+.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 149 (406)
T COG1819 76 RLLQQFKKLIRELLELLREL-EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIP---- 149 (406)
T ss_pred HHhhhhhhhhHHHHHHHHhc-chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccccccc----
Confidence 1111222222333222222 89999999755455 8999999999987555433221111 00000000000000
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCcc---chhHHH--------HHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhc
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAA---RKSRFK--------FWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHH 233 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 233 (479)
..+ +......+....... .....+ ...+.+ .......+...+...++. +
T Consensus 150 -------~~~----~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~----- 209 (406)
T COG1819 150 -------LYP----LPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLF---ASGPLLEIAYTDVLFPPG-D----- 209 (406)
T ss_pred -------ccc----cChhhccccccchhhhhhhhhhhhccccccccchHHHh---cCCCCccccccccccCCC-C-----
Confidence 000 000000000000000 000000 000101 011111111111111110 0
Q ss_pred ccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeE
Q 011687 234 SKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFI 313 (479)
Q Consensus 234 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~i 313 (479)
.++....++||+..... .++..|+. .++++||+|||| .... .++++.+++++..++.++|
T Consensus 210 -----~~p~~~~~~~~~~~~~~-----------~~~~~~~~--~d~~~vyvslGt-~~~~-~~l~~~~~~a~~~l~~~vi 269 (406)
T COG1819 210 -----RLPFIGPYIGPLLGEAA-----------NELPYWIP--ADRPIVYVSLGT-VGNA-VELLAIVLEALADLDVRVI 269 (406)
T ss_pred -----CCCCCcCcccccccccc-----------ccCcchhc--CCCCeEEEEcCC-cccH-HHHHHHHHHHHhcCCcEEE
Confidence 33455666777765432 11223433 568899999999 6655 8999999999999999999
Q ss_pred EEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHH
Q 011687 314 WVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYI 393 (479)
Q Consensus 314 w~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv 393 (479)
...+. ... -..+++ +|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+
T Consensus 270 ~~~~~-~~~-----~~~~~p--~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 270 VSLGG-ARD-----TLVNVP--DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred Eeccc-ccc-----ccccCC--CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 88875 211 111233 89999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHccc
Q 011687 394 VKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGD 438 (479)
Q Consensus 394 ~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~ 438 (479)
++ +|+|..+.. ++.+.|+++|+++|+++.|+++++++++.+++.
T Consensus 340 e~-~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~ 385 (406)
T COG1819 340 EE-LGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE 385 (406)
T ss_pred HH-cCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99 999999974 999999999999999999999999999999995
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=219.87 Aligned_cols=315 Identities=17% Similarity=0.162 Sum_probs=199.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCC-CCCCCCCCCHHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPD-GLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~-~l~~~~~~~~~~~~~~~~~ 89 (479)
+||++...|+.||++|.++||++|.++||+|.|++.+. .++.......|+.++.++. ++... . ....+.....
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~---~~e~~l~~~~g~~~~~~~~~~l~~~--~-~~~~~~~~~~ 75 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQ---GIEKTIIEKENIPYYSISSGKLRRY--F-DLKNIKDPFL 75 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCC---ccccccCcccCCcEEEEeccCcCCC--c-hHHHHHHHHH
Confidence 57999999999999999999999999999999999764 2222122225788877763 22221 1 1222333322
Q ss_pred hchHHH--HHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 011687 90 IMPIHL--ERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQH 165 (479)
Q Consensus 90 ~~~~~l--~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 165 (479)
.....+ ..+++++ +||+|+....+ ..+..+|..+++|+++....
T Consensus 76 ~~~~~~~~~~i~~~~----kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n---------------------------- 123 (352)
T PRK12446 76 VMKGVMDAYVRIRKL----KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD---------------------------- 123 (352)
T ss_pred HHHHHHHHHHHHHhc----CCCEEEecCchhhHHHHHHHHHcCCCEEEECCC----------------------------
Confidence 222222 2356666 99999998744 33689999999999985211
Q ss_pred cccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCcee
Q 011687 166 LESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVL 245 (479)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~ 245 (479)
.+++ ..+++.. +..+.+ +.+|++-. . +++ ..+++
T Consensus 124 ------~~~g---------------------~~nr~~~-----~~a~~v-~~~f~~~~----~--~~~-------~~k~~ 157 (352)
T PRK12446 124 ------MTPG---------------------LANKIAL-----RFASKI-FVTFEEAA----K--HLP-------KEKVI 157 (352)
T ss_pred ------CCcc---------------------HHHHHHH-----HhhCEE-EEEccchh----h--hCC-------CCCeE
Confidence 0111 1111111 222233 33333311 1 111 25788
Q ss_pred Eec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCH-HHHHHHHHHHHhCCCCeEEEEcCCcCCC
Q 011687 246 LVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGE-EKVKTLALTLEALGLPFIWVLGFAWREG 323 (479)
Q Consensus 246 ~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~-~~~~~l~~al~~~~~~~iw~~~~~~~~~ 323 (479)
++| |+..... . ...+...+.+...+++++|+|..|| ...... +.+..++..+.. +.+++|+++...
T Consensus 158 ~tG~Pvr~~~~-----~--~~~~~~~~~~~l~~~~~~iLv~GGS-~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~--- 225 (352)
T PRK12446 158 YTGSPVREEVL-----K--GNREKGLAFLGFSRKKPVITIMGGS-LGAKKINETVREALPELLL-KYQIVHLCGKGN--- 225 (352)
T ss_pred EECCcCCcccc-----c--ccchHHHHhcCCCCCCcEEEEECCc-cchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---
Confidence 999 5543221 0 0011111223323567899999999 664332 334444444432 478888887542
Q ss_pred CChhhHhhhcCCCCceEEeee-e-hHHhhcccCccceEeccchhHHHHHHHhCcceecccCc-----cchhhHHHHHHHH
Q 011687 324 LPDGYLDRVSNSRQGKVVPWA-P-QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA-----GDQFINCAYIVKM 396 (479)
Q Consensus 324 l~~~~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~nA~rv~~~ 396 (479)
+.+... . . .++.+..|+ + ..+++..+|+ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++
T Consensus 226 ~~~~~~-~-~--~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~- 298 (352)
T PRK12446 226 LDDSLQ-N-K--EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER- 298 (352)
T ss_pred HHHHHh-h-c--CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-
Confidence 111111 1 1 345566777 4 4578999998 99999999999999999999999974 489999999999
Q ss_pred hcceeeeCC--CCHHHHHHHHHHHhcCH-HHHHHH
Q 011687 397 WKIGIRVNG--FGKRDIEDGLKKLKEDS-EMKHRL 428 (479)
Q Consensus 397 ~Gvg~~~~~--~~~~~i~~~i~~vl~~~-~~~~~a 428 (479)
.|+|..+.. ++++.|.+++.++++|+ .+++++
T Consensus 299 ~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~ 333 (352)
T PRK12446 299 QGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTAL 333 (352)
T ss_pred CCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 999998854 99999999999999876 454433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.9e-24 Score=210.27 Aligned_cols=304 Identities=22% Similarity=0.212 Sum_probs=191.1
Q ss_pred CEEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCC--CCCCCHHHHHHHH
Q 011687 11 NKILMVPYP-AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEK--NEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~-~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~--~~~~~~~~~~~~~ 87 (479)
|||+|...+ |.||+.++++||++| |||+|++++.....+.+.. . +....++..... +..-+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----R-FPVREIPGLGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----c-cCEEEccCceEeccCCccchHHHHHHH
Confidence 788888876 779999999999999 6999999999765444443 2 455555422111 1111112222221
Q ss_pred HH---hchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 88 EN---IMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 88 ~~---~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
.. .....++++++.+... +||+||+|. .+.+..+|+..|||++.+.......... ..
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~-~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~---------------~~--- 132 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLREF-RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN---------------FW--- 132 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHhc-CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc---------------CC---
Confidence 11 1222333333333222 899999995 6667899999999999986553221100 00
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCce
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKV 244 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v 244 (479)
+ .+. .........+.... .....+..+..++. . +.. ...++
T Consensus 133 --------~-----------~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~--~~~------------~~~~~ 173 (318)
T PF13528_consen 133 --------L-----------PWD----QDFGRLIERYIDRY-HFPPADRRLALSFY-P--PLP------------PFFRV 173 (318)
T ss_pred --------c-----------chh----hhHHHHHHHhhhhc-cCCcccceecCCcc-c--ccc------------ccccc
Confidence 0 000 00111112222221 12334444444433 1 111 13456
Q ss_pred eEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCC-CCeEEEEcCCcCCC
Q 011687 245 LLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALG-LPFIWVLGFAWREG 323 (479)
Q Consensus 245 ~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~-~~~iw~~~~~~~~~ 323 (479)
.++||+..++. .... ..+++.|+|+||. ... + .++++++.++ +++++. +....+
T Consensus 174 ~~~~p~~~~~~-------~~~~---------~~~~~~iLv~~gg-~~~---~---~~~~~l~~~~~~~~~v~-g~~~~~- 228 (318)
T PF13528_consen 174 PFVGPIIRPEI-------RELP---------PEDEPKILVYFGG-GGP---G---DLIEALKALPDYQFIVF-GPNAAD- 228 (318)
T ss_pred cccCchhcccc-------cccC---------CCCCCEEEEEeCC-CcH---H---HHHHHHHhCCCCeEEEE-cCCccc-
Confidence 67888876532 1110 1245689999998 322 2 6677888876 556555 543211
Q ss_pred CChhhHhhhcCCCCceEEeee--ehHHhhcccCccceEeccchhHHHHHHHhCcceecccC--ccchhhHHHHHHHHhcc
Q 011687 324 LPDGYLDRVSNSRQGKVVPWA--PQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPV--AGDQFINCAYIVKMWKI 399 (479)
Q Consensus 324 l~~~~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~nA~rv~~~~Gv 399 (479)
+. . +|+.+..+. ...++|+.+++ +|+|||.||++||+++|+|+|++|. ..||..||+++++ +|+
T Consensus 229 -~~------~--~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~ 296 (318)
T PF13528_consen 229 -PR------P--GNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGL 296 (318)
T ss_pred -cc------C--CCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCC
Confidence 11 2 899999876 45779999888 9999999999999999999999999 7799999999999 999
Q ss_pred eeeeC--CCCHHHHHHHHHHH
Q 011687 400 GIRVN--GFGKRDIEDGLKKL 418 (479)
Q Consensus 400 g~~~~--~~~~~~i~~~i~~v 418 (479)
|..++ +++++.|.++|+++
T Consensus 297 ~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 297 GIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred eEEcccccCCHHHHHHHHhcC
Confidence 99986 39999999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.1e-22 Score=197.62 Aligned_cols=305 Identities=16% Similarity=0.179 Sum_probs=175.1
Q ss_pred EEEEecCCCC-CCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeE-EEeCCCC-CC-CCCCCCHHHHHHHH
Q 011687 12 KILMVPYPAQ-GHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEIS-CMSIPDG-LE-KNEPKDFFAIEKVI 87 (479)
Q Consensus 12 ~i~~~~~~~~-gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~-~~~i~~~-l~-~~~~~~~~~~~~~~ 87 (479)
||+|...|.. ||+.|.++||++|++ ||+|+++++......+.. .++. +..+|.. +. .+..-+....+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-----YGFKVFETFPGIKLKGEDGKVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-----hcCcceeccCCceEeecCCcCcHHHHHHhh
Confidence 5677666655 999999999999999 999999998764444444 3443 3333311 10 01111122222211
Q ss_pred HHhchHHHH---HHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 88 ENIMPIHLE---RLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 88 ~~~~~~~l~---~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
.......+. +++++. +||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 75 ~~~~~~~~~~~~~~l~~~----~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------------------- 126 (321)
T TIGR00661 75 EYSPKKAIRREINIIREY----NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------------------- 126 (321)
T ss_pred ccccHHHHHHHHHHHHhc----CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------------------
Confidence 111112232 344444 99999999 57778999999999999875421100
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCce
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKV 244 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v 244 (479)
+++. . +. .....+.....+. ...+......++... . .. |.+
T Consensus 127 --------~~~~--~--~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~-----------~~-p~~ 167 (321)
T TIGR00661 127 --------YPLK--T--DL----------IVYPTMAALRIFN--ERCERFIVPDYPFPY---T-----------IC-PKI 167 (321)
T ss_pred --------CCcc--c--ch----------hHHHHHHHHHHhc--cccceEeeecCCCCC---C-----------CC-ccc
Confidence 0000 0 00 0000111111111 222233233322111 0 11 111
Q ss_pred e--EeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCC
Q 011687 245 L--LVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWRE 322 (479)
Q Consensus 245 ~--~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~ 322 (479)
. .-+|+.. ..+.++.. .+++.|+|.+|+ .. ...+++++++.+. +.++++....
T Consensus 168 ~~~~~~~~~~--------------~~~~~~~~--~~~~~iLv~~g~-~~------~~~l~~~l~~~~~-~~~i~~~~~~- 222 (321)
T TIGR00661 168 IKNMEGPLIR--------------YDVDDVDN--YGEDYILVYIGF-EY------RYKILELLGKIAN-VKFVCYSYEV- 222 (321)
T ss_pred cccCCCcccc--------------hhhhcccc--CCCCcEEEECCc-CC------HHHHHHHHHhCCC-eEEEEeCCCC-
Confidence 0 0011110 11112322 245577888888 32 3456777877763 3333332111
Q ss_pred CCChhhHhhhcCCCCceEEeeee--hHHhhcccCccceEeccchhHHHHHHHhCcceecccCcc--chhhHHHHHHHHhc
Q 011687 323 GLPDGYLDRVSNSRQGKVVPWAP--QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAG--DQFINCAYIVKMWK 398 (479)
Q Consensus 323 ~l~~~~~~~~~~~~nv~~~~~~p--q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~nA~rv~~~~G 398 (479)
..+ ..+ +|+.+.+|.| ..++|+.+++ +|||||.+|+.||+++|+|++++|... ||..||+.+++ .|
T Consensus 223 -~~~----~~~--~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g 292 (321)
T TIGR00661 223 -AKN----SYN--ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LG 292 (321)
T ss_pred -Ccc----ccC--CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CC
Confidence 111 223 7899999997 4668888888 999999999999999999999999855 89999999999 99
Q ss_pred ceeeeCCCCHHHHHHHHHHHhcCHHHH
Q 011687 399 IGIRVNGFGKRDIEDGLKKLKEDSEMK 425 (479)
Q Consensus 399 vg~~~~~~~~~~i~~~i~~vl~~~~~~ 425 (479)
+|..++..+. ++.+++.++++|++|+
T Consensus 293 ~~~~l~~~~~-~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 293 CGIALEYKEL-RLLEAILDIRNMKRYK 318 (321)
T ss_pred CEEEcChhhH-HHHHHHHhcccccccc
Confidence 9999976444 5566666777777654
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.8e-21 Score=186.76 Aligned_cols=338 Identities=16% Similarity=0.160 Sum_probs=207.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCC-eEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-CCCCHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGF-EPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN-EPKDFFAIEKVIE 88 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh-~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~-~~~~~~~~~~~~~ 88 (479)
|+|++...|+.||+.|.++|+++|.++|+ +|.++.+... .+.......++.++.++.+-... .... .+....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~---~e~~l~~~~~~~~~~I~~~~~~~~~~~~---~~~~~~ 74 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDG---LEAFLVKQYGIEFELIPSGGLRRKGSLK---LLKAPF 74 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEeccccc---ceeeeccccCceEEEEecccccccCcHH---HHHHHH
Confidence 57888888999999999999999999999 5888766432 11112222578888887543332 1111 111112
Q ss_pred Hhc--hHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 89 NIM--PIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 89 ~~~--~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
..+ ....+.+++++ +||+||....+ ..+..+|..+|||.+..-.
T Consensus 75 ~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq---------------------------- 122 (357)
T COG0707 75 KLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ---------------------------- 122 (357)
T ss_pred HHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHHHhCCCCEEEEec----------------------------
Confidence 212 22245577777 99999986645 5567899999999998410
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCce
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKV 244 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v 244 (479)
+..++. .+.+.. +.+ ..+..+|+..+. +.. +.++
T Consensus 123 ------n~~~G~---------------------ank~~~-----~~a-~~V~~~f~~~~~------~~~-------~~~~ 156 (357)
T COG0707 123 ------NAVPGL---------------------ANKILS-----KFA-KKVASAFPKLEA------GVK-------PENV 156 (357)
T ss_pred ------CCCcch---------------------hHHHhH-----Hhh-ceeeeccccccc------cCC-------CCce
Confidence 112221 000111 111 233344443110 111 3468
Q ss_pred eEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCC-HHHHHHHHHHHHhCCCCeEEEEcCCcCC
Q 011687 245 LLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIG-EEKVKTLALTLEALGLPFIWVLGFAWRE 322 (479)
Q Consensus 245 ~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~-~~~~~~l~~al~~~~~~~iw~~~~~~~~ 322 (479)
..+| |+...-. . .+..-..+ +...++++|+|.-|| .+... .+.+..+...+.+ ++.+++.++.+..
T Consensus 157 ~~tG~Pvr~~~~-----~---~~~~~~~~-~~~~~~~~ilV~GGS-~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~- 224 (357)
T COG0707 157 VVTGIPVRPEFE-----E---LPAAEVRK-DGRLDKKTILVTGGS-QGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL- 224 (357)
T ss_pred EEecCcccHHhh-----c---cchhhhhh-hccCCCcEEEEECCc-chhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH-
Confidence 8899 7766432 1 01110111 112368899999999 55322 2333333333333 4667777765421
Q ss_pred CCChhhHhhhcCCCC-ceEEeeeeh-HHhhcccCccceEeccchhHHHHHHHhCcceecccCc----cchhhHHHHHHHH
Q 011687 323 GLPDGYLDRVSNSRQ-GKVVPWAPQ-LKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA----GDQFINCAYIVKM 396 (479)
Q Consensus 323 ~l~~~~~~~~~~~~n-v~~~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~----~DQ~~nA~rv~~~ 396 (479)
+....... ..+ +.+..|... .++++.+|+ +||++|.+|+.|+++.|+|.|.+|.- .||..||..+++
T Consensus 225 ---~~~~~~~~-~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~- 297 (357)
T COG0707 225 ---EELKSAYN-ELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK- 297 (357)
T ss_pred ---HHHHHHHh-hcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh-
Confidence 11111111 023 666688776 458888888 99999999999999999999999963 389999999999
Q ss_pred hcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhh
Q 011687 397 WKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKL 459 (479)
Q Consensus 397 ~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 459 (479)
.|.|..++. +|.+++.+.|.+++++++ +..+|++..++... .++.+++++.++..
T Consensus 298 ~gaa~~i~~~~lt~~~l~~~i~~l~~~~~---~l~~m~~~a~~~~~-----p~aa~~i~~~~~~~ 354 (357)
T COG0707 298 AGAALVIRQSELTPEKLAELILRLLSNPE---KLKAMAENAKKLGK-----PDAAERIADLLLAL 354 (357)
T ss_pred CCCEEEeccccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHhcCC-----CCHHHHHHHHHHHH
Confidence 999999976 899999999999998744 55555555555411 14455555555443
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=1.4e-19 Score=179.04 Aligned_cols=322 Identities=16% Similarity=0.129 Sum_probs=194.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc--ccccccCCCCCCCeEEEeCCCC-CCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI--HNQITSSMDPRSEISCMSIPDG-LEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~--~~~i~~~~~~~~g~~~~~i~~~-l~~~~~~~~~~~~~~~ 87 (479)
|||+|...+..||...++.++++|.++||+|++++.+.- ....+. .|++++.++.. +... .....+...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~---~~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSGGLRRK---GSLANLKAP 73 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----CCCcEEEEeccCcCCC---ChHHHHHHH
Confidence 899999998999999999999999999999999998641 112222 47777666532 2111 111111111
Q ss_pred HHh--chHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCC
Q 011687 88 ENI--MPIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSP 163 (479)
Q Consensus 88 ~~~--~~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~ 163 (479)
... ....+.+++++. +||+|++.... ..+..++...++|+|......
T Consensus 74 ~~~~~~~~~~~~~ik~~----~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 124 (357)
T PRK00726 74 FKLLKGVLQARKILKRF----KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHhc----CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------------------
Confidence 111 111233444444 89999999632 445667888899998631000
Q ss_pred CccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCc
Q 011687 164 QHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPK 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (479)
.++ ....+.. ...+.++..+...+. . .+ ..+
T Consensus 125 ---------~~~---------------------~~~r~~~-----~~~d~ii~~~~~~~~-------~-~~------~~~ 155 (357)
T PRK00726 125 ---------VPG---------------------LANKLLA-----RFAKKVATAFPGAFP-------E-FF------KPK 155 (357)
T ss_pred ---------Ccc---------------------HHHHHHH-----HHhchheECchhhhh-------c-cC------CCC
Confidence 000 0000000 112223332211110 0 01 467
Q ss_pred eeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCH-HHHHHHHHHHHhCCC--CeEEEEcCCc
Q 011687 244 VLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGE-EKVKTLALTLEALGL--PFIWVLGFAW 320 (479)
Q Consensus 244 v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~-~~~~~l~~al~~~~~--~~iw~~~~~~ 320 (479)
+.++|+-...+.. ...... ..+ ....+.++|++..|+ ... .....+.+|+.++.. .++|.++.+.
T Consensus 156 i~vi~n~v~~~~~----~~~~~~---~~~-~~~~~~~~i~~~gg~----~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~ 223 (357)
T PRK00726 156 AVVTGNPVREEIL----ALAAPP---ARL-AGREGKPTLLVVGGS----QGARVLNEAVPEALALLPEALQVIHQTGKGD 223 (357)
T ss_pred EEEECCCCChHhh----cccchh---hhc-cCCCCCeEEEEECCc----HhHHHHHHHHHHHHHHhhhCcEEEEEcCCCc
Confidence 8888843332210 000000 011 212344566655455 222 233444477766543 3456666543
Q ss_pred CCCCChhhHhhhcCCCCceEEeeee-hHHhhcccCccceEeccchhHHHHHHHhCcceecccC----ccchhhHHHHHHH
Q 011687 321 REGLPDGYLDRVSNSRQGKVVPWAP-QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPV----AGDQFINCAYIVK 395 (479)
Q Consensus 321 ~~~l~~~~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~nA~rv~~ 395 (479)
. +.+.+....+-++.+.+|+. ..++++.+++ +|+|+|.+++.||+++|+|+|++|. ..||..|+..+.+
T Consensus 224 ~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 224 L----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred H----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 2 22222221113477789884 5689999999 9999999999999999999999997 4689999999999
Q ss_pred HhcceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcc
Q 011687 396 MWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMG 437 (479)
Q Consensus 396 ~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~ 437 (479)
.|.|..++. ++++.|++++.++++|++.++++.+-+.+...
T Consensus 298 -~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (357)
T PRK00726 298 -AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGK 340 (357)
T ss_pred -CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC
Confidence 899998864 67999999999999999988877777666544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=5.3e-18 Score=167.23 Aligned_cols=322 Identities=16% Similarity=0.134 Sum_probs=190.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCC-CCCCCCCCHHHHHHHHHHh
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDG-LEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~-l~~~~~~~~~~~~~~~~~~ 90 (479)
+|++...++.||...++.+++.|.++||+|++++...- .... .....|+++..++.. .... .....+......
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 74 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRG-LEAR--LVPKAGIPLHTIPVGGLRRK---GSLKKLKAPFKL 74 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCc-chhh--cccccCCceEEEEecCcCCC---ChHHHHHHHHHH
Confidence 58889999999999999999999999999999987541 1111 111145666666532 2211 112222222211
Q ss_pred --chHHHHHHHHHhhccCCceEEEeCCC--cccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcc
Q 011687 91 --MPIHLERLINKINEDGRVACVVVDLL--ASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHL 166 (479)
Q Consensus 91 --~~~~l~~~l~~l~~~~~~D~vi~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 166 (479)
....+..++++. +||+|+++.. ...+..+|...++|++.....
T Consensus 75 ~~~~~~~~~~i~~~----~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------------------- 121 (350)
T cd03785 75 LKGVLQARKILKKF----KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------------------- 121 (350)
T ss_pred HHHHHHHHHHHHhc----CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------------------
Confidence 112233444444 9999998753 244567889999999863100
Q ss_pred ccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeE
Q 011687 167 ESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLL 246 (479)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 246 (479)
..++ ..+.+ . ....+.+++.+....+. .. +.++..
T Consensus 122 -----~~~~---------------------~~~~~---~--~~~~~~vi~~s~~~~~~--~~------------~~~~~~ 156 (350)
T cd03785 122 -----AVPG---------------------LANRL---L--ARFADRVALSFPETAKY--FP------------KDKAVV 156 (350)
T ss_pred -----CCcc---------------------HHHHH---H--HHhhCEEEEcchhhhhc--CC------------CCcEEE
Confidence 0000 00101 0 12245555554332221 00 357777
Q ss_pred eccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC---CCCeEEEEcCCcCCC
Q 011687 247 VGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL---GLPFIWVLGFAWREG 323 (479)
Q Consensus 247 vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~---~~~~iw~~~~~~~~~ 323 (479)
+|.-..... . ...+. ...+....++++|++..|+ ... .+....+.+++..+ +..+++.++.+..
T Consensus 157 i~n~v~~~~-----~-~~~~~--~~~~~~~~~~~~i~~~~g~-~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~-- 223 (350)
T cd03785 157 TGNPVREEI-----L-ALDRE--RARLGLRPGKPTLLVFGGS-QGA--RAINEAVPEALAELLRKRLQVIHQTGKGDL-- 223 (350)
T ss_pred ECCCCchHH-----h-hhhhh--HHhcCCCCCCeEEEEECCc-HhH--HHHHHHHHHHHHHhhccCeEEEEEcCCccH--
Confidence 874332211 0 00000 1222222345566665566 321 22223333454443 3345566665421
Q ss_pred CChhhHhhhcC-CCCceEEeee-ehHHhhcccCccceEeccchhHHHHHHHhCcceecccC----ccchhhHHHHHHHHh
Q 011687 324 LPDGYLDRVSN-SRQGKVVPWA-PQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPV----AGDQFINCAYIVKMW 397 (479)
Q Consensus 324 l~~~~~~~~~~-~~nv~~~~~~-pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~nA~rv~~~~ 397 (479)
+.+.+.+.. ++|+.+.+|+ ...++|+.+++ +|+++|.+++.||+++|+|+|++|. ..+|..|+..+.+ .
T Consensus 224 --~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~ 298 (350)
T cd03785 224 --EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-A 298 (350)
T ss_pred --HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-C
Confidence 222222110 2688888988 55779999998 9999999999999999999999985 4689999999999 8
Q ss_pred cceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011687 398 KIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRT 435 (479)
Q Consensus 398 Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~ 435 (479)
|.|..++. .+.+++.+++++++++++.++++.+-+...
T Consensus 299 g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 299 GAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99998875 589999999999998887766555544433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=147.10 Aligned_cols=340 Identities=17% Similarity=0.203 Sum_probs=203.9
Q ss_pred CCCCCEEEEecC--CCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-------
Q 011687 7 TKKKNKILMVPY--PAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN------- 75 (479)
Q Consensus 7 ~~~~~~i~~~~~--~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~------- 75 (479)
+++.+||+|++. -+-||+..+..||++|++. |.+|++++......... -..|++++.+|.....+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~----~~~gVd~V~LPsl~k~~~G~~~~~ 81 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP----GPAGVDFVKLPSLIKGDNGEYGLV 81 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC----CcccCceEecCceEecCCCceeee
Confidence 334579999996 4669999999999999998 99999999864322221 12689999999533321
Q ss_pred -CCCCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhc
Q 011687 76 -EPKDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKS 154 (479)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 154 (479)
...+ .+-+..++ ...+...++.+ +||++|+|.+-++. .-|-+ |.. . ++ ...
T Consensus 82 d~~~~-l~e~~~~R---s~lil~t~~~f----kPDi~IVd~~P~Gl--r~EL~--ptL-----------~--yl---~~~ 133 (400)
T COG4671 82 DLDGD-LEETKKLR---SQLILSTAETF----KPDIFIVDKFPFGL--RFELL--PTL-----------E--YL---KTT 133 (400)
T ss_pred ecCCC-HHHHHHHH---HHHHHHHHHhc----CCCEEEEeccccch--hhhhh--HHH-----------H--HH---hhc
Confidence 1112 11122222 12233445555 99999999854441 11110 000 0 00 000
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcc
Q 011687 155 GYISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHS 234 (479)
Q Consensus 155 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 234 (479)
+. ..+-+ .....+.+......+ .-+...+... +..+.+++...|.+..+... +.-.
T Consensus 134 ~t--------------~~vL~--lr~i~D~p~~~~~~w----~~~~~~~~I~--r~yD~V~v~GdP~f~d~~~~--~~~~ 189 (400)
T COG4671 134 GT--------------RLVLG--LRSIRDIPQELEADW----RRAETVRLIN--RFYDLVLVYGDPDFYDPLTE--FPFA 189 (400)
T ss_pred CC--------------cceee--hHhhhhchhhhccch----hhhHHHHHHH--HhheEEEEecCccccChhhc--CCcc
Confidence 00 00000 000111111111111 1122222222 44567787777877644433 1111
Q ss_pred cccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-CCCeE
Q 011687 235 KGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-GLPFI 313 (479)
Q Consensus 235 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-~~~~i 313 (479)
. ....++.|+|.+ .+.. +....+ +.. ..++..|+||-|. +....+.+...++|.... +.+-.
T Consensus 190 ~---~i~~k~~ytG~v-q~~~---~~~~~p-------~~~-~pE~~~Ilvs~GG--G~dG~eLi~~~l~A~~~l~~l~~~ 252 (400)
T COG4671 190 P---AIRAKMRYTGFV-QRSL---PHLPLP-------PHE-APEGFDILVSVGG--GADGAELIETALAAAQLLAGLNHK 252 (400)
T ss_pred H---hhhhheeEeEEe-eccC---cCCCCC-------CcC-CCccceEEEecCC--ChhhHHHHHHHHHHhhhCCCCCcc
Confidence 0 235689999998 3211 001111 111 1445589999887 667778888888877663 44424
Q ss_pred EEEcCCcCCCCChhh----HhhhcCCCCceEEeeeeh-HHhhcccCccceEeccchhHHHHHHHhCcceecccCcc---c
Q 011687 314 WVLGFAWREGLPDGY----LDRVSNSRQGKVVPWAPQ-LKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAG---D 385 (479)
Q Consensus 314 w~~~~~~~~~l~~~~----~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~---D 385 (479)
|++-.+. ..|+.. ....+..+++.+..|-.+ .+++.-++. +|+-||+||++|-|.+|+|.|++|... |
T Consensus 253 ~~ivtGP--~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eE 328 (400)
T COG4671 253 WLIVTGP--FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREE 328 (400)
T ss_pred eEEEeCC--CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHH
Confidence 4443221 244332 222333478999999776 568888777 999999999999999999999999865 9
Q ss_pred hhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHH
Q 011687 386 QFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEM 424 (479)
Q Consensus 386 Q~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~ 424 (479)
|-.-|.|+++ +|+.-.+.. ++++.+++++...++.|+.
T Consensus 329 QliRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~~P~~ 368 (400)
T COG4671 329 QLIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALARPSP 368 (400)
T ss_pred HHHHHHHHHh-cCcceeeCcccCChHHHHHHHHhcccCCCC
Confidence 9999999999 999987743 9999999999999965543
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=4e-16 Score=153.73 Aligned_cols=320 Identities=17% Similarity=0.166 Sum_probs=178.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
|||+|++.+..||+.....||++|.++||+|++++.+.. .... .....|++++.++..-.. ...+...+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~--~~~~-~~~~~g~~~~~i~~~~~~--~~~~~~~l~~~~~~ 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRG--LEKR-LVPKAGIEFYFIPVGGLR--RKGSFRLIKTPLKL 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCc--chhc-ccccCCCceEEEeccCcC--CCChHHHHHHHHHH
Confidence 589999999999999888999999999999999987431 1101 001146777666532111 11222222222111
Q ss_pred --chHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcc
Q 011687 91 --MPIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHL 166 (479)
Q Consensus 91 --~~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~ 166 (479)
....+.+++++. +||+|++.... ..+..++..+++|.+.....
T Consensus 76 ~~~~~~l~~~i~~~----~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------------------- 122 (348)
T TIGR01133 76 LKAVFQARRILKKF----KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN----------------------------- 122 (348)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-----------------------------
Confidence 111233445444 99999987533 33455788889998752100
Q ss_pred ccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeE
Q 011687 167 ESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLL 246 (479)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 246 (479)
..+ .....+. . +..+.+++.+...-+ .+ ...+
T Consensus 123 -----~~~---------------------~~~~~~~---~--~~~d~ii~~~~~~~~---------------~~--~~~~ 154 (348)
T TIGR01133 123 -----AVP---------------------GLTNKLL---S--RFAKKVLISFPGAKD---------------HF--EAVL 154 (348)
T ss_pred -----CCc---------------------cHHHHHH---H--HHhCeeEECchhHhh---------------cC--CceE
Confidence 000 0001111 1 234445544422111 01 2245
Q ss_pred ec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC---CCCeEEEEcCCcCC
Q 011687 247 VG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL---GLPFIWVLGFAWRE 322 (479)
Q Consensus 247 vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~---~~~~iw~~~~~~~~ 322 (479)
+| |+..... ...... ..+...+++++|.+.-|+ .. .......+.++++.+ +.++++..+.+..
T Consensus 155 i~n~v~~~~~-----~~~~~~----~~~~~~~~~~~i~~~gg~-~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~- 221 (348)
T TIGR01133 155 VGNPVRQEIR-----SLPVPR----ERFGLREGKPTILVLGGS-QG--AKILNELVPKALAKLAEKGIQIVHQTGKNDL- 221 (348)
T ss_pred EcCCcCHHHh-----cccchh----hhcCCCCCCeEEEEECCc-hh--HHHHHHHHHHHHHHHhhcCcEEEEECCcchH-
Confidence 55 3321111 000000 122212233444433345 32 222223344555443 4455554443321
Q ss_pred CCChhhHhhhcCCCCceEEeee--ehHHhhcccCccceEeccchhHHHHHHHhCcceecccCc---cchhhHHHHHHHHh
Q 011687 323 GLPDGYLDRVSNSRQGKVVPWA--PQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVA---GDQFINCAYIVKMW 397 (479)
Q Consensus 323 ~l~~~~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~nA~rv~~~~ 397 (479)
+.+.+.+..-+-..++.|. ...++|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++ .
T Consensus 222 ---~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~ 295 (348)
T TIGR01133 222 ---EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-L 295 (348)
T ss_pred ---HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-C
Confidence 2222222200111233333 55779999998 99999988999999999999999863 478889999999 7
Q ss_pred cceeeeCC--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011687 398 KIGIRVNG--FGKRDIEDGLKKLKEDSEMKHRLMNLYMRT 435 (479)
Q Consensus 398 Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~ 435 (479)
|.|..++. .++++|+++++++++|++.+++..+-+...
T Consensus 296 ~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 296 GAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKL 335 (348)
T ss_pred CCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 99998865 579999999999999988776555544443
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=1.4e-16 Score=158.23 Aligned_cols=343 Identities=12% Similarity=0.010 Sum_probs=189.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCC----eEEEeCCCCCCCCCCCCHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSE----ISCMSIPDGLEKNEPKDFFAIEKV 86 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g----~~~~~i~~~l~~~~~~~~~~~~~~ 86 (479)
.||+|...++.||++|. +|+++|.++|++|.+++... +.+++ .| +++..++- .++.+.+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~-----~g~~~~~~~~~l~v-------~G~~~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAA-----EGCEVLYSMEELSV-------MGLREVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHh-----CcCccccChHHhhh-------ccHHHHHHH
Confidence 58999999999999999 99999999999999999764 34444 33 33333331 111122222
Q ss_pred HHHh--chHHHHHHHHHhhccCCceEEEeCCCc-ccHHH--HHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCC
Q 011687 87 IENI--MPIHLERLINKINEDGRVACVVVDLLA-SSAIG--VACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTG 161 (479)
Q Consensus 87 ~~~~--~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~ 161 (479)
+... ......+++++. +||+||.-... +.... .|+.+|||++.+.+ |..
T Consensus 71 ~~~~~~~~~~~~~~l~~~----kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~---------------------P~~- 124 (385)
T TIGR00215 71 LGRLLKIRKEVVQLAKQA----KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS---------------------PQV- 124 (385)
T ss_pred HHHHHHHHHHHHHHHHhc----CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC---------------------CcH-
Confidence 2221 111233344444 99999964432 33333 88999999998521 000
Q ss_pred CCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCC
Q 011687 162 SPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCR 241 (479)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 241 (479)
|. +++ . ..+.+. +..+.+++.+..+.+ +++. .+
T Consensus 125 --------wa-w~~----------------~-~~r~l~---------~~~d~v~~~~~~e~~-------~~~~-----~g 157 (385)
T TIGR00215 125 --------WA-WRK----------------W-RAKKIE---------KATDFLLAILPFEKA-------FYQK-----KN 157 (385)
T ss_pred --------hh-cCc----------------c-hHHHHH---------HHHhHhhccCCCcHH-------HHHh-----cC
Confidence 00 000 0 001111 112223322211211 1111 13
Q ss_pred CceeEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEE
Q 011687 242 PKVLLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWV 315 (479)
Q Consensus 242 ~~v~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~ 315 (479)
.+..++| |+..... ...+...+..+-+...+++++|.+--|| -...-......++++++.+ +.++++.
T Consensus 158 ~~~~~vGnPv~~~~~-----~~~~~~~~~r~~lgl~~~~~~Ilvl~GS-R~aei~k~~~~ll~a~~~l~~~~p~~~~vi~ 231 (385)
T TIGR00215 158 VPCRFVGHPLLDAIP-----LYKPDRKSAREKLGIDHNGETLALLPGS-RGSEVEKLFPLFLKAAQLLEQQEPDLRRVLP 231 (385)
T ss_pred CCEEEECCchhhhcc-----ccCCCHHHHHHHcCCCCCCCEEEEECCC-CHHHHHHhHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4667889 5543211 0001111122223323456788887788 4332234556666666543 2335444
Q ss_pred EcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecc----cCcc-------
Q 011687 316 LGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY----PVAG------- 384 (479)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~------- 384 (479)
.........-+.+.+....+.++.+..+ ...++++.+|+ +|+-.|..|+ |++++|+|+|++ |+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~ 307 (385)
T TIGR00215 232 VVNFKRRLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLV 307 (385)
T ss_pred eCCchhHHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHH
Confidence 4322110000111111110123333322 34568888888 9999999888 999999999999 7642
Q ss_pred --chhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHcccccCCCchhHHHHHH
Q 011687 385 --DQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDS----EMKHRLMNLYMRTMGDDGARARVMNNLTGF 452 (479)
Q Consensus 385 --DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~----~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~ 452 (479)
.|..|++.+.+ .++...+.. +|++.|.+.+.++|+|+ +.+++..+--.++++.-..++.+.++.+.+
T Consensus 308 ~~~~~~~~nil~~-~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 308 KTDYISLPNILAN-RLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred cCCeeeccHHhcC-CccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 38889999999 799988753 99999999999999888 655555555444444333234444444433
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=7.1e-15 Score=146.61 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=104.6
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-CCCeEEEEcCCcCCCCChhhHhhhcC-CCCceEEeeeeh-HHhhccc
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-GLPFIWVLGFAWREGLPDGYLDRVSN-SRQGKVVPWAPQ-LKVLQHN 353 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~-~~nv~~~~~~pq-~~lL~~~ 353 (479)
+++++|++.-|+ ... .+.+..+++++.+. +.+++++.+.+.. +-+.+.+.... ++||.+.+|+++ .++++.+
T Consensus 200 ~~~~~il~~~G~-~~~--~k~~~~li~~l~~~~~~~~viv~G~~~~--~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~a 274 (380)
T PRK13609 200 PNKKILLIMAGA-HGV--LGNVKELCQSLMSVPDLQVVVVCGKNEA--LKQSLEDLQETNPDALKVFGYVENIDELFRVT 274 (380)
T ss_pred CCCcEEEEEcCC-CCC--CcCHHHHHHHHhhCCCcEEEEEeCCCHH--HHHHHHHHHhcCCCcEEEEechhhHHHHHHhc
Confidence 355677777787 442 22345667777654 4566666653210 11122211110 158999999987 4799999
Q ss_pred CccceEeccchhHHHHHHHhCcceecc-cCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011687 354 AVGFYLTHCGWNSTMEAIQSGKRLLCY-PVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 354 ~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++ .|+|... .+.+++.+++.++++|++.+++..+-.
T Consensus 275 D~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (380)
T PRK13609 275 SC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI--RDDEEVFAKTEALLQDDMKLLQMKEAM 349 (380)
T ss_pred cE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE--CCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 98 99999988999999999999985 677778899999988 8998866 568999999999999888766555444
Q ss_pred HHH
Q 011687 433 MRT 435 (479)
Q Consensus 433 ~~~ 435 (479)
.++
T Consensus 350 ~~~ 352 (380)
T PRK13609 350 KSL 352 (380)
T ss_pred HHh
Confidence 333
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.66 E-value=6e-15 Score=139.76 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=78.6
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhC--CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehH-HhhcccCc
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEAL--GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQL-KVLQHNAV 355 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~--~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~-~lL~~~~~ 355 (479)
.+.|+|+||. . .+......+++++.+. +.++.+++|+... ..+.+.+.....+|+.+..++++. ++|+.+|+
T Consensus 170 ~~~iLi~~GG-~--d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~--~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl 244 (279)
T TIGR03590 170 LRRVLVSFGG-A--DPDNLTLKLLSALAESQINISITLVTGSSNP--NLDELKKFAKEYPNIILFIDVENMAELMNEADL 244 (279)
T ss_pred cCeEEEEeCC-c--CCcCHHHHHHHHHhccccCceEEEEECCCCc--CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE
Confidence 4589999997 2 2333556677777664 4567777775421 112222222222689988999985 79999999
Q ss_pred cceEeccchhHHHHHHHhCcceecccCccchhhHHHH
Q 011687 356 GFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAY 392 (479)
Q Consensus 356 ~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~r 392 (479)
+|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 245 --~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 --AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred --EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=2e-13 Score=136.21 Aligned_cols=324 Identities=10% Similarity=0.034 Sum_probs=165.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
+|||+|+..++.||+.|.. ++++|.++++++.+++... +.+++.... .++.++.++- ..+.+.+..+..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~-------~g~~~~~~~~~~ 69 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG--PRMQAAGCE-SLFDMEELAV-------MGLVEVLPRLPR 69 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc--HHHHhCCCc-cccCHHHhhh-------ccHHHHHHHHHH
Confidence 3799999999999999999 9999999888877776433 233330000 2233322221 111222222222
Q ss_pred h--chHHHHHHHHHhhccCCceEEEeCCCc-ccH--HHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 011687 90 I--MPIHLERLINKINEDGRVACVVVDLLA-SSA--IGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQ 164 (479)
Q Consensus 90 ~--~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 164 (479)
. ....+.++++++ +||+|+.-... ++. ...|...|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~----kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~-------------------------- 119 (380)
T PRK00025 70 LLKIRRRLKRRLLAE----PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS-------------------------- 119 (380)
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--------------------------
Confidence 1 122244555555 99999874332 233 334677899988641100
Q ss_pred ccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCce
Q 011687 165 HLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKV 244 (479)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v 244 (479)
.+.+.+ ...+.+. +..+.+++.+....+ ++.. ++.++
T Consensus 120 ----~~~~~~---------------------~~~~~~~------~~~d~i~~~~~~~~~-------~~~~-----~g~~~ 156 (380)
T PRK00025 120 ----VWAWRQ---------------------GRAFKIA------KATDHVLALFPFEAA-------FYDK-----LGVPV 156 (380)
T ss_pred ----hhhcCc---------------------hHHHHHH------HHHhhheeCCccCHH-------HHHh-----cCCCe
Confidence 000000 0111111 223344444422211 1111 23347
Q ss_pred eEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEEEcC
Q 011687 245 LLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWVLGF 318 (479)
Q Consensus 245 ~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~ 318 (479)
.++| |+..... . ......+..-+....++++|.+..|| ...........++++++.+ +.+++|+.+.
T Consensus 157 ~~~G~p~~~~~~-----~-~~~~~~~~~~l~~~~~~~~il~~~gs-r~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~ 229 (380)
T PRK00025 157 TFVGHPLADAIP-----L-LPDRAAARARLGLDPDARVLALLPGS-RGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVN 229 (380)
T ss_pred EEECcCHHHhcc-----c-ccChHHHHHHcCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 7888 4332111 0 01111222223322345566666676 3322223345566665443 2345555442
Q ss_pred CcCCCCChhhHhhhcC--CCCceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCcc--------chhh
Q 011687 319 AWREGLPDGYLDRVSN--SRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAG--------DQFI 388 (479)
Q Consensus 319 ~~~~~l~~~~~~~~~~--~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~ 388 (479)
+. ..+.+.+.+.. +-++.+.+ -.-..+++.+|+ +|+.+|.+++ ||+++|+|+|+.|... .|..
T Consensus 230 ~~---~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~ 302 (380)
T PRK00025 230 PK---RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVK 302 (380)
T ss_pred hh---hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHc
Confidence 21 11222222210 02333332 123568888998 9999998887 9999999999885432 2222
Q ss_pred H-----HHHHHHHhcceeee--CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011687 389 N-----CAYIVKMWKIGIRV--NGFGKRDIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 389 n-----A~rv~~~~Gvg~~~--~~~~~~~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
| +..+.+ .+++..+ +..+++.|++.+.++++|++.+++..+-.
T Consensus 303 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 303 VPYVSLPNLLAG-RELVPELLQEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred CCeeehHHHhcC-CCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2 233333 2333333 33889999999999999988776554443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.57 E-value=2.6e-13 Score=135.46 Aligned_cols=174 Identities=10% Similarity=0.135 Sum_probs=117.6
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHh-C-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhccc
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEA-L-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQHN 353 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~-~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~ 353 (479)
+++++|++..|+ ... ...+..+++++.+ . +.+++++++.+. .+-+.+.+.....+++.+.+|+.+ .++++.+
T Consensus 200 ~~~~~ilv~~G~-lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~a 274 (391)
T PRK13608 200 PDKQTILMSAGA-FGV--SKGFDTMITDILAKSANAQVVMICGKSK--ELKRSLTAKFKSNENVLILGYTKHMNEWMASS 274 (391)
T ss_pred CCCCEEEEECCC-ccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--HHHHHHHHHhccCCCeEEEeccchHHHHHHhh
Confidence 456788888888 542 2345555555433 2 345656655331 011222222221267888899876 4689999
Q ss_pred CccceEeccchhHHHHHHHhCcceecc-cCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011687 354 AVGFYLTHCGWNSTMEAIQSGKRLLCY-PVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 354 ~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
|+ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+++ .|+|..+. +.+++.++|.++++|++.+++..+-+
T Consensus 275 Dl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~--~~~~l~~~i~~ll~~~~~~~~m~~~~ 349 (391)
T PRK13608 275 QL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD--TPEEAIKIVASLTNGNEQLTNMISTM 349 (391)
T ss_pred hE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC--CHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99 99988888999999999999998 776777899999999 89998774 78999999999998876554444333
Q ss_pred HHHcccccCCCchhHHHHHHHHHHHhhhcCCc
Q 011687 433 MRTMGDDGARARVMNNLTGFVDDLSKLTRNDH 464 (479)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 464 (479)
.+... + .+..+.++.+.+.++...+..+
T Consensus 350 ~~~~~---~-~s~~~i~~~l~~l~~~~~~~~~ 377 (391)
T PRK13608 350 EQDKI---K-YATQTICRDLLDLIGHSSQPQE 377 (391)
T ss_pred HHhcC---C-CCHHHHHHHHHHHhhhhhhhhh
Confidence 33332 2 4455666666666666555444
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=1.1e-15 Score=133.93 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=96.4
Q ss_pred EEEEEeCCccccC-CHHHHHHHHHHHHh--CCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeee-hHHhhcccCcc
Q 011687 281 VIYISFGSWVSPI-GEEKVKTLALTLEA--LGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP-QLKVLQHNAVG 356 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~-~~~~~~~l~~al~~--~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~ 356 (479)
+|+|+.|| .... -.+.+..+...+.. ...++++.+|..........+ .... .++.+.+|.+ ..+++..+|+
T Consensus 1 tilv~gGs-~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~-~~~~--~~v~~~~~~~~m~~~m~~aDl- 75 (167)
T PF04101_consen 1 TILVTGGS-QGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKV-ENFN--PNVKVFGFVDNMAELMAAADL- 75 (167)
T ss_dssp -EEEEETT-TSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCH-CCTT--CCCEEECSSSSHHHHHHHHSE-
T ss_pred CEEEEECC-CCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHH-hccC--CcEEEEechhhHHHHHHHcCE-
Confidence 58999999 4321 01112223333322 247888888865321111111 1111 5789999999 7889999999
Q ss_pred ceEeccchhHHHHHHHhCcceecccCcc----chhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHhcCHHHHH
Q 011687 357 FYLTHCGWNSTMEAIQSGKRLLCYPVAG----DQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLKEDSEMKH 426 (479)
Q Consensus 357 ~~I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl~~~~~~~ 426 (479)
+|||||.||+.|+++.|+|+|++|... +|..||..+++ .|+|..+.. .+.+.|.+.|.++++++..+.
T Consensus 76 -vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~ 149 (167)
T PF04101_consen 76 -VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSDPEKLK 149 (167)
T ss_dssp -EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCCHH-SH
T ss_pred -EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcCcHHHH
Confidence 999999999999999999999999988 99999999999 899998865 779999999999998877533
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.49 E-value=2.1e-11 Score=121.57 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=77.6
Q ss_pred CCceEEeeeeh-HHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh-hHHHHHHHHhcceeeeCCCCHHHHHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF-INCAYIVKMWKIGIRVNGFGKRDIED 413 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~nA~rv~~~~Gvg~~~~~~~~~~i~~ 413 (479)
.++.+.+|+++ .++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|..+ -++++|.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~ 339 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS--ESPKEIAR 339 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec--CCHHHHHH
Confidence 57888899886 568989998 999999999999999999999998766665 79998998 7999866 68899999
Q ss_pred HHHHHhcC-HHHHHHHHHHHHHH
Q 011687 414 GLKKLKED-SEMKHRLMNLYMRT 435 (479)
Q Consensus 414 ~i~~vl~~-~~~~~~a~~l~~~~ 435 (479)
+|.+++++ ++.+++..+-+.+.
T Consensus 340 ~i~~ll~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 340 IVAEWFGDKSDELEAMSENALKL 362 (382)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999977 66555444444333
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=1.1e-11 Score=123.40 Aligned_cols=329 Identities=16% Similarity=0.117 Sum_probs=182.3
Q ss_pred CCCHHHHHHHHHHHHh--CCCeEE---EEcCCccccccccCCCCCCCeEEEeCCC-CCCCCCCCCHHHHHHHHHH-hchH
Q 011687 21 QGHVTPMHKLASILTS--RGFEPI---VITPEFIHNQITSSMDPRSEISCMSIPD-GLEKNEPKDFFAIEKVIEN-IMPI 93 (479)
Q Consensus 21 ~gH~~p~l~la~~L~~--rGh~V~---~~~~~~~~~~i~~~~~~~~g~~~~~i~~-~l~~~~~~~~~~~~~~~~~-~~~~ 93 (479)
.|-=.-.++||++|++ .|++|. ++++.. .+++......| .+..+|. ++.. ......+..+.. ....
T Consensus 7 hged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~---~~e~~~ip~~g-~~~~~~sgg~~~---~~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 7 HGEDLIAARIAKALLQLSPDLNLEALPLVGEGR---AYQNLGIPIIG-PTKELPSGGFSY---QSLRGLLRDLRAGLVGL 79 (396)
T ss_pred chHHHHHHHHHHHHHhhCCCCCeEEeCcccCCH---HHhhCCCceeC-CCCCCCCCCccC---CCHHHHHHHHHhhHHHH
Confidence 3333456788999998 699999 999874 22221111144 4555553 2332 222333333322 2222
Q ss_pred HHH--HHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCccccccc
Q 011687 94 HLE--RLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLESTAR 171 (479)
Q Consensus 94 ~l~--~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~ 171 (479)
.++ .+++++. .+||+||+-.-+. ...+|...|+|++.+.+.-...+.. ..... .. .+.+.
T Consensus 80 ~~~~~~~~~~~~--~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~-------------~~~~~-~~-~~~~~ 141 (396)
T TIGR03492 80 TLGQWRALRKWA--KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWE-------------SGPRR-SP-SDEYH 141 (396)
T ss_pred HHHHHHHHHHHh--hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeec-------------CCCCC-cc-chhhh
Confidence 221 2444442 2899999876444 8889999999999964321111100 00000 00 12222
Q ss_pred cCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhh-hcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeEec-c
Q 011687 172 FLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLER-SRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVG-P 249 (479)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~vG-p 249 (479)
.++|.... ++ +.... .+.++.+++..-..-+ +++. .+.++.++| |
T Consensus 142 ~~~G~~~~--------------------p~-e~n~l~~~~a~~v~~~~~~t~~-------~l~~-----~g~k~~~vGnP 188 (396)
T TIGR03492 142 RLEGSLYL--------------------PW-ERWLMRSRRCLAVFVRDRLTAR-------DLRR-----QGVRASYLGNP 188 (396)
T ss_pred ccCCCccC--------------------HH-HHHHhhchhhCEEeCCCHHHHH-------HHHH-----CCCeEEEeCcC
Confidence 33332110 01 11111 1344455544422111 3332 256899999 6
Q ss_pred ccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC----CCCeEEEEcCCcCCCCC
Q 011687 250 LSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL----GLPFIWVLGFAWREGLP 325 (479)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~----~~~~iw~~~~~~~~~l~ 325 (479)
+...-. ..... -+ .+++++|.+--|| -...-...+..++++++.+ +..|++.+.++...
T Consensus 189 v~d~l~--------~~~~~---~l--~~~~~~lllLpGS-R~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~--- 251 (396)
T TIGR03492 189 MMDGLE--------PPERK---PL--LTGRFRIALLPGS-RPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL--- 251 (396)
T ss_pred HHhcCc--------ccccc---cc--CCCCCEEEEECCC-CHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH---
Confidence 654321 00100 11 2345678888888 4333334455677777665 45677777432210
Q ss_pred hhhHhhhcC-----------------CCCceEEeee-ehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh
Q 011687 326 DGYLDRVSN-----------------SRQGKVVPWA-PQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF 387 (479)
Q Consensus 326 ~~~~~~~~~-----------------~~nv~~~~~~-pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 387 (479)
+.+.+.... .+++.+..+. ...++++.+++ +|+-.|..| .|+...|+|+|++|.-..|.
T Consensus 252 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~ 328 (396)
T TIGR03492 252 EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF 328 (396)
T ss_pred HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH
Confidence 111111100 0124554444 34668999998 999999766 99999999999999877786
Q ss_pred hHHHHHHHHh----cceeeeCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 011687 388 INCAYIVKMW----KIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 388 ~nA~rv~~~~----Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~ 429 (479)
||...++ . |.+..+...+.+.|.+++.++++|++.+++..
T Consensus 329 -na~~~~~-~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 329 -TYGFAEA-QSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred -HHHHHHh-hHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 9877666 4 77777767777999999999999987766555
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=7.4e-14 Score=118.37 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=80.8
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh--
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI-- 90 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~-- 90 (479)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++ .|++|++++....-.........+......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-----AGLEFVPIPGDSRLPRSLEPLANLRRLARLIR 75 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-----TT-EEEESSSCGGGGHHHHHHHHHHCHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-----cCceEEEecCCcCcCcccchhhhhhhHHHHhh
Confidence 6899999999999999999999999999999999999999988 999999998661000000011111111110
Q ss_pred ----chHHHHHHHHHh----hccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchh
Q 011687 91 ----MPIHLERLINKI----NEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 91 ----~~~~l~~~l~~l----~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~ 138 (479)
+...+.+...+. ......|+++++.....+..+||++|||++.....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 76 GLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 111122111111 112268888889877899999999999999975554
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.41 E-value=5.3e-10 Score=110.14 Aligned_cols=143 Identities=12% Similarity=0.089 Sum_probs=94.9
Q ss_pred CcEEEEEeCCccc-cCCHHHHHHHHHHHHhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHH---hhccc
Q 011687 279 NSVIYISFGSWVS-PIGEEKVKTLALTLEAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLK---VLQHN 353 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~ 353 (479)
++.+++..|+ .. ....+.+-.++..+... +.. ++.+|.+... +.+. ... .||.+.+|+++.+ +++.+
T Consensus 196 ~~~~i~~~G~-~~~~k~~~~~i~~~~~l~~~~~~~-l~i~G~~~~~---~~~~-~~~--~~v~~~g~~~~~~~~~~~~~~ 267 (364)
T cd03814 196 DRPVLLYVGR-LAPEKNLEALLDADLPLRRRPPVR-LVIVGDGPAR---ARLE-ARY--PNVHFLGFLDGEELAAAYASA 267 (364)
T ss_pred CCeEEEEEec-cccccCHHHHHHHHHHhhhcCCce-EEEEeCCchH---HHHh-ccC--CcEEEEeccCHHHHHHHHHhC
Confidence 3466777887 43 23334444444444332 233 3444432211 1111 223 7899999999765 78888
Q ss_pred CccceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 011687 354 AVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 354 ~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~ 429 (479)
++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++ .+.|..++..+.+++++++.+++++++.+++..
T Consensus 268 d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 340 (364)
T cd03814 268 DV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEPGDAEAFAAALAALLADPELRRRMA 340 (364)
T ss_pred CE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 88 886654 47899999999999988766 45666777 689998888888999999999999888766655
Q ss_pred HHHHHHc
Q 011687 430 NLYMRTM 436 (479)
Q Consensus 430 ~l~~~~~ 436 (479)
+-+.+..
T Consensus 341 ~~~~~~~ 347 (364)
T cd03814 341 ARARAEA 347 (364)
T ss_pred HHHHHHH
Confidence 5554443
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.40 E-value=6.1e-10 Score=114.06 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=89.9
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHH---hhcccCcc
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLK---VLQHNAVG 356 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~ 356 (479)
..+++..|+ .. ....+..++++++..+.--+..+|.+.. .+.+.+.. .+.+|.+.+++|+.+ +++.+|+
T Consensus 263 ~~~i~~vGr-l~--~~K~~~~li~a~~~~~~~~l~ivG~G~~---~~~l~~~~-~~~~V~f~G~v~~~ev~~~~~~aDv- 334 (465)
T PLN02871 263 KPLIVYVGR-LG--AEKNLDFLKRVMERLPGARLAFVGDGPY---REELEKMF-AGTPTVFTGMLQGDELSQAYASGDV- 334 (465)
T ss_pred CeEEEEeCC-Cc--hhhhHHHHHHHHHhCCCcEEEEEeCChH---HHHHHHHh-ccCCeEEeccCCHHHHHHHHHHCCE-
Confidence 355667788 43 3445667788887764333344553321 12222221 125788889998655 7778888
Q ss_pred ceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHH--HhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011687 357 FYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVK--MWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMN 430 (479)
Q Consensus 357 ~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~--~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~ 430 (479)
||.-.. ..++.||+++|+|+|+.... .....+++ .-+.|..++.-+.++++++|.++++|++.+++..+
T Consensus 335 -~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~ 409 (465)
T PLN02871 335 -FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGA 409 (465)
T ss_pred -EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 775432 45789999999999987654 33334443 02778888778899999999999988775544443
Q ss_pred HH
Q 011687 431 LY 432 (479)
Q Consensus 431 l~ 432 (479)
-+
T Consensus 410 ~a 411 (465)
T PLN02871 410 AA 411 (465)
T ss_pred HH
Confidence 33
No 47
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.34 E-value=4.2e-09 Score=103.00 Aligned_cols=328 Identities=16% Similarity=0.130 Sum_probs=172.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc-ccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN-QITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~-~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
||++++....|+...+..++++|.++||+|++++...... .... .+++++.++..... ......+....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~-- 70 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-----LGVKVIPIPLDRRG---INPFKDLKALL-- 70 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-----CCceEEeccccccc---cChHhHHHHHH--
Confidence 4677776678899999999999999999999999865322 2233 57777766633211 11111111111
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCccc--HHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcccc
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLASS--AIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLES 168 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~ 168 (479)
.+...+++. +||+|++...... +..++...+.|.++..........
T Consensus 71 ---~~~~~~~~~----~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------- 118 (359)
T cd03808 71 ---RLYRLLRKE----RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------------- 118 (359)
T ss_pred ---HHHHHHHhc----CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-------------------------
Confidence 233344444 8999998864432 334455466666654222110000
Q ss_pred ccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeEec
Q 011687 169 TARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVG 248 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~vG 248 (479)
.. . ......+....+.. ....+.+++.+....+.-... ... .-...+..++
T Consensus 119 ----~~-------~---------~~~~~~~~~~~~~~--~~~~d~ii~~s~~~~~~~~~~--~~~-----~~~~~~~~~~ 169 (359)
T cd03808 119 ----TS-------G---------GLKRRLYLLLERLA--LRFTDKVIFQNEDDRDLALKL--GII-----KKKKTVLIPG 169 (359)
T ss_pred ----cc-------c---------hhHHHHHHHHHHHH--HhhccEEEEcCHHHHHHHHHh--cCC-----CcCceEEecC
Confidence 00 0 00011122122222 245567777775443321111 000 0012333333
Q ss_pred cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCe-EEEEcCCcCCCCChh
Q 011687 249 PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPF-IWVLGFAWREGLPDG 327 (479)
Q Consensus 249 pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~~l~~~ 327 (479)
...+.. ....... . ..+++.+++..|+.......+.+-..+..+.+.+..+ ++.++..........
T Consensus 170 -~~~~~~-----~~~~~~~----~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~ 236 (359)
T cd03808 170 -SGVDLD-----RFSPSPE----P---IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAI 236 (359)
T ss_pred -CCCChh-----hcCcccc----c---cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHH
Confidence 222111 0000000 0 1234578888888222333444444444443322332 344443322111111
Q ss_pred h-HhhhcCCCCceEEeeeeh-HHhhcccCccceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHHHhccee
Q 011687 328 Y-LDRVSNSRQGKVVPWAPQ-LKVLQHNAVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGI 401 (479)
Q Consensus 328 ~-~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~ 401 (479)
. ........+|.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+.+.. .....+++ .+.|.
T Consensus 237 ~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~-~~~g~ 309 (359)
T cd03808 237 LEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID-GVNGF 309 (359)
T ss_pred HHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc-CcceE
Confidence 0 112221257777776443 558888888 775443 68999999999999987654 45566777 57888
Q ss_pred eeCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011687 402 RVNGFGKRDIEDGLKKLKEDSEMKHRLMN 430 (479)
Q Consensus 402 ~~~~~~~~~i~~~i~~vl~~~~~~~~a~~ 430 (479)
.++.-+.+++.+++.+++++++..++..+
T Consensus 310 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 310 LVPPGDAEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred EECCCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88778899999999999988765554433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.31 E-value=2.8e-09 Score=104.65 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=89.5
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhC---CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHH---hhc
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEAL---GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLK---VLQ 351 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~---~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~ 351 (479)
+.+.+++..|+ ... ......+++++..+ +.++ +.+|...... ......... .++.+.+++++.+ ++.
T Consensus 189 ~~~~~i~~~G~-~~~--~k~~~~li~~~~~l~~~~~~l-~i~G~~~~~~-~~~~~~~~~--~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 189 GGRLRFGFIGQ-LTP--HKGVDLLLEAFKRLPRGDIEL-VIVGNGLELE-EESYELEGD--PRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CCceEEEEEec-Ccc--ccCHHHHHHHHHHHHhcCcEE-EEEcCchhhh-HHHHhhcCC--CeEEEeCCCCHHHHHHHHH
Confidence 34567778888 332 22234445555443 3444 4444332111 011000122 7888999998655 588
Q ss_pred ccCccceEe----ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHH
Q 011687 352 HNAVGFYLT----HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKH 426 (479)
Q Consensus 352 ~~~~~~~I~----HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~ 426 (479)
.+++ +|+ ..| ..++.||+++|+|+|+.+.. .+...+.+ -+.|..++.-+.+++++++.+++++++.++
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~ 334 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRD-GVNGLLFPPGDAEDLAAALERLIDDPDLLE 334 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcC-CCcEEEECCCCHHHHHHHHHHHHhChHHHH
Confidence 8888 663 233 45899999999999987654 56777777 568888887889999999999998887655
Q ss_pred HHHHH
Q 011687 427 RLMNL 431 (479)
Q Consensus 427 ~a~~l 431 (479)
++.+-
T Consensus 335 ~~~~~ 339 (359)
T cd03823 335 RLRAG 339 (359)
T ss_pred HHHHh
Confidence 54443
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=4.9e-09 Score=104.07 Aligned_cols=141 Identities=10% Similarity=0.063 Sum_probs=86.6
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHh----CCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhccc
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEA----LGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQHN 353 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~----~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~ 353 (479)
...+++.+|. .. +...+..+++++.. .+.++++. +.+.....-....++....+++.+.++.++ ..++..+
T Consensus 196 ~~~~il~~g~-l~--~~K~~~~li~a~~~l~~~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 271 (371)
T cd04962 196 GEKVLIHISN-FR--PVKRIDDVIRIFAKVRKEVPARLLLV-GDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIA 271 (371)
T ss_pred CCeEEEEecc-cc--cccCHHHHHHHHHHHHhcCCceEEEE-cCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhc
Confidence 3466777887 33 23334444444433 24444433 332211000111112211267888887765 5588888
Q ss_pred CccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 011687 354 AVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 354 ~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~ 429 (479)
++ +|.- |...++.||+++|+|+|+.... ..+..+++ -..|..++.-+.+++++++.+++++++.++++.
T Consensus 272 d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~-~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 344 (371)
T cd04962 272 DL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKH-GETGFLVDVGDVEAMAEYALSLLEDDELWQEFS 344 (371)
T ss_pred CE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcC-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 88 6632 3456999999999999986543 56677777 467887777789999999999998876554443
Q ss_pred H
Q 011687 430 N 430 (479)
Q Consensus 430 ~ 430 (479)
+
T Consensus 345 ~ 345 (371)
T cd04962 345 R 345 (371)
T ss_pred H
Confidence 3
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.27 E-value=1.3e-08 Score=101.91 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCceEEeeeehHH---hhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
.++.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+.... .....+++ -+.|..++..+.
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~~~~ 355 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDPRDP 355 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCCCCH
Confidence 6888899999866 5788888 7754 2246899999999999987654 46666777 578998887889
Q ss_pred HHHHHHHHHHhcCHHHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~a~ 429 (479)
++++++|.+++++++.+++..
T Consensus 356 ~~l~~~i~~l~~~~~~~~~~~ 376 (398)
T cd03800 356 EALAAALRRLLTDPALRRRLS 376 (398)
T ss_pred HHHHHHHHHHHhCHHHHHHHH
Confidence 999999999998876544433
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.24 E-value=2.4e-08 Score=100.18 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=65.9
Q ss_pred CCceEEeeeehHH---hhcccCccceEe---ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
++|.+.+++|+.+ ++..+++ +|. +.| ..++.||+++|+|+|+... ......+.+ -..|..++..++
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~-~~~G~lv~~~d~ 353 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITD-GENGLLVDFFDP 353 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhccc-CCceEEcCCCCH
Confidence 6888899999765 5677887 553 222 2489999999999998644 356677777 467888877889
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHRL 428 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~a 428 (479)
++++++|.+++++++.+++.
T Consensus 354 ~~la~~i~~ll~~~~~~~~l 373 (396)
T cd03818 354 DALAAAVIELLDDPARRARL 373 (396)
T ss_pred HHHHHHHHHHHhCHHHHHHH
Confidence 99999999999888654443
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.23 E-value=1.1e-08 Score=101.47 Aligned_cols=349 Identities=14% Similarity=0.059 Sum_probs=173.0
Q ss_pred EEEEecCC----CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccC----CCCCCCeEEEeCCCCCCCCCCCCHHHH
Q 011687 12 KILMVPYP----AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSS----MDPRSEISCMSIPDGLEKNEPKDFFAI 83 (479)
Q Consensus 12 ~i~~~~~~----~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~----~~~~~g~~~~~i~~~l~~~~~~~~~~~ 83 (479)
||++++.. ..|+-..+..+++.|+++||+|++++........... .....++.+..++...... ......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK--NGLLKR 78 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc--cchHHH
Confidence 45555532 2589999999999999999999999975421211100 0112456665555332211 111111
Q ss_pred HHHHHHhchHHHHHHHHHhhccCCceEEEeCCCc----ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCC
Q 011687 84 EKVIENIMPIHLERLINKINEDGRVACVVVDLLA----SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISD 159 (479)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~ 159 (479)
+.............+. ....+||+|++.... ..+..++...++|++............ .
T Consensus 79 ~~~~~~~~~~~~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~----- 141 (394)
T cd03794 79 LLNYLSFALSALLALL---KRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV---------A----- 141 (394)
T ss_pred HHhhhHHHHHHHHHHH---hcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH---------H-----
Confidence 1111111111111111 123389999988511 224456667799998853221000000 0
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhccccccc
Q 011687 160 TGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATL 239 (479)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 239 (479)
. .. .... ............. ....++.+++.+....+.-. . .. .
T Consensus 142 -~---------~~------~~~~---------~~~~~~~~~~~~~--~~~~~d~vi~~s~~~~~~~~-~--~~------~ 185 (394)
T cd03794 142 -L---------GL------LKNG---------SLLYRLLRKLERL--IYRRADAIVVISPGMREYLV-R--RG------V 185 (394)
T ss_pred -c---------cC------cccc---------chHHHHHHHHHHH--HHhcCCEEEEECHHHHHHHH-h--cC------C
Confidence 0 00 0000 0000112222222 23567777777755443211 0 00 1
Q ss_pred CCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccc-cCCHHHHHHHHHHHHhC-CCCeEEEEc
Q 011687 240 CRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVS-PIGEEKVKTLALTLEAL-GLPFIWVLG 317 (479)
Q Consensus 240 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~-~~~~iw~~~ 317 (479)
...++..+..-...... ............. ..+++.+++..|+ .. ....+.+-..+..+.+. +.++ +.++
T Consensus 186 ~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~i~~~G~-~~~~k~~~~l~~~~~~l~~~~~~~l-~i~G 257 (394)
T cd03794 186 PPEKISVIPNGVDLELF----KPPPADESLRKEL--GLDDKFVVLYAGN-IGRAQGLDTLLEAAALLKDRPDIRF-LIVG 257 (394)
T ss_pred CcCceEEcCCCCCHHHc----CCccchhhhhhcc--CCCCcEEEEEecC-cccccCHHHHHHHHHHHhhcCCeEE-EEeC
Confidence 12455555432221110 0000000001111 2234577778888 43 23334444434444333 3333 3444
Q ss_pred CCcCCCCChhhHh--hhcCCCCceEEeeeehHH---hhcccCccceEeccc---------hhHHHHHHHhCcceecccCc
Q 011687 318 FAWREGLPDGYLD--RVSNSRQGKVVPWAPQLK---VLQHNAVGFYLTHCG---------WNSTMEAIQSGKRLLCYPVA 383 (479)
Q Consensus 318 ~~~~~~l~~~~~~--~~~~~~nv~~~~~~pq~~---lL~~~~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~ 383 (479)
.+.. .+.+.+ ....-+|+.+.+++++.+ ++..+++ +|.... .+++.||+++|+|+|+.+..
T Consensus 258 ~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 258 DGPE---KEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred Cccc---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 3221 111211 011116888889998655 6778888 664322 34579999999999999887
Q ss_pred cchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011687 384 GDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNLYM 433 (479)
Q Consensus 384 ~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l~~ 433 (479)
+.+ ..+.+ .+.|..++..+.+++++++.++++|++.+++..+-+.
T Consensus 333 ~~~----~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 377 (394)
T cd03794 333 ESA----ELVEE-AGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGR 377 (394)
T ss_pred Cch----hhhcc-CCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 543 34445 4778877777899999999999988776655444433
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.22 E-value=1.4e-08 Score=100.00 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=64.1
Q ss_pred CCceEEeeeehHH---hhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
+++.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+.... ..+..+++ .+.|..++..+.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~~~~ 331 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVAD-GENGFLFPPGDE 331 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----Chhhheec-CceeEEeCCCCH
Confidence 7899999999765 6778888 6643 3357899999999999987643 56667777 578888876444
Q ss_pred HHHHHHHHHHhcCHHHH
Q 011687 409 RDIEDGLKKLKEDSEMK 425 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~ 425 (479)
++.+++.+++++++..
T Consensus 332 -~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 332 -ALAEALLRLLQDPELR 347 (374)
T ss_pred -HHHHHHHHHHhChHHH
Confidence 9999999999887744
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.22 E-value=2.7e-08 Score=100.28 Aligned_cols=83 Identities=11% Similarity=0.140 Sum_probs=61.3
Q ss_pred CceEE-eeeehHH---hhcccCccceEe-c------cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC
Q 011687 337 QGKVV-PWAPQLK---VLQHNAVGFYLT-H------CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG 405 (479)
Q Consensus 337 nv~~~-~~~pq~~---lL~~~~~~~~I~-H------gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~ 405 (479)
|+.+. +|+|..+ +|+.+++ ++. + |-..++.||+++|+|+|+.... .....+++ -+.|..++
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~-~~~G~lv~- 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKH-GENGLVFG- 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcC-CCCEEEEC-
Confidence 55555 6888655 6778888 663 1 1245799999999999986543 56677888 57898884
Q ss_pred CCHHHHHHHHHHHhcC---HHHHHHH
Q 011687 406 FGKRDIEDGLKKLKED---SEMKHRL 428 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~~---~~~~~~a 428 (479)
+.++++++|.++++| ++-++++
T Consensus 367 -d~~~la~~i~~ll~~~~~~~~~~~m 391 (415)
T cd03816 367 -DSEELAEQLIDLLSNFPNRGKLNSL 391 (415)
T ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 799999999999987 5644433
No 55
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=9.3e-10 Score=99.12 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=117.1
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeee-hHHhhcccCcc
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP-QLKVLQHNAVG 356 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~ 356 (479)
++.-|+|++|. +.+....-+++..+.+.++.+-+++++.. .-..+..++....+|+.+..... ...|+..+++
T Consensus 157 ~~r~ilI~lGG---sDpk~lt~kvl~~L~~~~~nl~iV~gs~~--p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~- 230 (318)
T COG3980 157 PKRDILITLGG---SDPKNLTLKVLAELEQKNVNLHIVVGSSN--PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL- 230 (318)
T ss_pred chheEEEEccC---CChhhhHHHHHHHhhccCeeEEEEecCCC--cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch-
Confidence 34579999997 56666778899999888877777777432 12234444444336777775554 5669999998
Q ss_pred ceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011687 357 FYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG-FGKRDIEDGLKKLKEDSEMKHRLMNLYMRT 435 (479)
Q Consensus 357 ~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~-~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~ 435 (479)
.|+-||+ |+.|++..|+|-+++|....|.-.|...+. +|+-..+.- ++.+...-.+.++.+|...|++...-.+.+
T Consensus 231 -aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 231 -AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred -heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 9998886 889999999999999999999999999999 999988864 888888888889998998888776665544
Q ss_pred cc
Q 011687 436 MG 437 (479)
Q Consensus 436 ~~ 437 (479)
-+
T Consensus 308 ~d 309 (318)
T COG3980 308 GD 309 (318)
T ss_pred ec
Confidence 43
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.21 E-value=2.2e-08 Score=98.13 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCceEEeeeehHH---hhcccCccceEe----ccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLT----HCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
++|.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+++ .+.|..++..+.
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~~~ 328 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPGDP 328 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCCCH
Confidence 7889999997544 7888888 663 3556899999999999998776 456777777 588888888889
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
+++.+++.+++++++.+++..+-+
T Consensus 329 ~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 329 EALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHH
Confidence 999999999998877655444433
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.15 E-value=3.5e-07 Score=92.28 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhCC--CCeE-EEEcCCcCCCCChhhHhhhc--CCCCceEEeeeehHH---h
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEALG--LPFI-WVLGFAWREGLPDGYLDRVS--NSRQGKVVPWAPQLK---V 349 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~--~~~i-w~~~~~~~~~l~~~~~~~~~--~~~nv~~~~~~pq~~---l 349 (479)
+++.+++..|+ .. ...-+..+++|++.+. ..+- ..+|.+. ..+.+.+.+. .-+||.+.+|+|+.+ +
T Consensus 227 ~~~~~i~~~G~-l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~---~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 227 DGKKIVLYSGN-IG--EKQGLELVIDAARRLRDRPDLIFVICGQGG---GKARLEKMAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred CCCEEEEEcCc-cc--cccCHHHHHHHHHHhccCCCeEEEEECCCh---hHHHHHHHHHHcCCCceEEeCCCCHHHHHHH
Confidence 34466777888 43 3344555666666542 1232 3444332 1122221111 014788889998754 6
Q ss_pred hcccCccceEeccc------hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHH
Q 011687 350 LQHNAVGFYLTHCG------WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSE 423 (479)
Q Consensus 350 L~~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~ 423 (479)
++.+|+..+.+..+ .+.+.|++++|+|+|+....+.. ....++ +.|..++.-+.++++++|.++++|++
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~d~~~la~~i~~l~~~~~ 375 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPESVEALVAAIAALARQAL 375 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCCCHHHHHHHHHHHHhCHH
Confidence 88888844444433 13468999999999998764311 112222 56777777889999999999998876
Q ss_pred HHHHHHH
Q 011687 424 MKHRLMN 430 (479)
Q Consensus 424 ~~~~a~~ 430 (479)
.++++.+
T Consensus 376 ~~~~~~~ 382 (412)
T PRK10307 376 LRPKLGT 382 (412)
T ss_pred HHHHHHH
Confidence 5444433
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.14 E-value=1.2e-07 Score=95.43 Aligned_cols=339 Identities=17% Similarity=0.112 Sum_probs=169.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 011687 20 AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLI 99 (479)
Q Consensus 20 ~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 99 (479)
..|--.-...|+++|.++||+|+++|+......-.. .....|++++.++...... .....+...+.......+..++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPV-VEVAPGVRVRNVVAGPYEG--LDKEDLPTQLCAFTGGVLRAEA 95 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCc-cccCCCcEEEEecCCCccc--CCHHHHHHHHHHHHHHHHHHHh
Confidence 457778889999999999999999997532111000 1112467777664321111 0111111111111111222233
Q ss_pred HHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCccccccccCCCCC
Q 011687 100 NKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLESTARFLPNQP 177 (479)
Q Consensus 100 ~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 177 (479)
+. ...++|+|-+.... ..+..+++.+++|+|............ + +
T Consensus 96 ~~--~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~-----------~----------------~---- 142 (405)
T TIGR03449 96 RH--EPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNA-----------A----------------L---- 142 (405)
T ss_pred hc--cCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHHHH-----------h----------------c----
Confidence 22 12279999877633 345677888999988754332110000 0 0
Q ss_pred CCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCceeEec-cccccccc
Q 011687 178 MLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVG-PLSKHATI 256 (479)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~vG-pl~~~~~~ 256 (479)
...... ........+ ......++.+++.|....+.-... +..+ ..++..+. ++-....
T Consensus 143 --~~~~~~---------~~~~~~~~e-~~~~~~~d~vi~~s~~~~~~~~~~--~~~~------~~ki~vi~ngvd~~~~- 201 (405)
T TIGR03449 143 --ADGDTP---------EPEARRIGE-QQLVDNADRLIANTDEEARDLVRH--YDAD------PDRIDVVAPGADLERF- 201 (405)
T ss_pred --cCCCCC---------chHHHHHHH-HHHHHhcCeEEECCHHHHHHHHHH--cCCC------hhhEEEECCCcCHHHc-
Confidence 000000 000111111 112356778888775433311110 0000 23344443 2211110
Q ss_pred cCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC----CC-CeE-EEEcCCcCCC--CChhh
Q 011687 257 AKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL----GL-PFI-WVLGFAWREG--LPDGY 328 (479)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~----~~-~~i-w~~~~~~~~~--l~~~~ 328 (479)
.+. .......-+.. .+++.+++.+|+ ... .+-...+++|++.+ +. ++. +.+|+....+ ..+.+
T Consensus 202 ----~~~-~~~~~~~~~~~-~~~~~~i~~~G~-l~~--~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l 272 (405)
T TIGR03449 202 ----RPG-DRATERARLGL-PLDTKVVAFVGR-IQP--LKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDAL 272 (405)
T ss_pred ----CCC-cHHHHHHhcCC-CCCCcEEEEecC-CCc--ccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHH
Confidence 000 11111122221 233467778888 432 22234444444332 21 233 3344321111 11122
Q ss_pred H---hhhcCCCCceEEeeeehH---HhhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhc
Q 011687 329 L---DRVSNSRQGKVVPWAPQL---KVLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWK 398 (479)
Q Consensus 329 ~---~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~G 398 (479)
. ++...+++|.+.+++|+. ++++.+++ +|.- |...++.||+++|+|+|+.... .....+++ -+
T Consensus 273 ~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~ 345 (405)
T TIGR03449 273 IELAAELGIADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GE 345 (405)
T ss_pred HHHHHHcCCCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CC
Confidence 2 222223688888999865 47888888 6642 3346899999999999987654 45556677 57
Q ss_pred ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 011687 399 IGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNL 431 (479)
Q Consensus 399 vg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l 431 (479)
.|..++.-+.++++++|.+++++++.++++.+-
T Consensus 346 ~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 346 TGLLVDGHDPADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred ceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 788887788999999999999887655544433
No 59
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=5.8e-08 Score=95.59 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhCC-CCeEEEEcCCcCCCCChhhHh---hhcCCCCceEEeeeehHH---hhc
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEALG-LPFIWVLGFAWREGLPDGYLD---RVSNSRQGKVVPWAPQLK---VLQ 351 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~-~~~iw~~~~~~~~~l~~~~~~---~~~~~~nv~~~~~~pq~~---lL~ 351 (479)
+..+++..|+ .. ...-...++++++++. .++++ ++.+. ..+.+.+ +....+||.+.+|+|+.+ ++.
T Consensus 190 ~~~~i~~~G~-~~--~~K~~~~li~a~~~l~~~~l~i-~G~g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~ 262 (357)
T cd03795 190 GRPFFLFVGR-LV--YYKGLDVLLEAAAALPDAPLVI-VGEGP---LEAELEALAAALGLLDRVRFLGRLDDEEKAALLA 262 (357)
T ss_pred CCcEEEEecc-cc--cccCHHHHHHHHHhccCcEEEE-EeCCh---hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH
Confidence 3467778888 43 3344566778887776 33333 33221 1111111 112237899999999754 777
Q ss_pred ccCccceEe---ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHH
Q 011687 352 HNAVGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHR 427 (479)
Q Consensus 352 ~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~ 427 (479)
.+++.++.+ +.| ..++.||+++|+|+|+..........-. + -+.|..++..+.++++++|.++++|++.+++
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~ 338 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPPGDPAALAEAIRRLLEDPELRER 338 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCCCCHHHHHHHHHHHHHCHHHHHH
Confidence 788833333 233 3579999999999999776654433332 3 3778877778899999999999988875554
Q ss_pred HHH
Q 011687 428 LMN 430 (479)
Q Consensus 428 a~~ 430 (479)
..+
T Consensus 339 ~~~ 341 (357)
T cd03795 339 LGE 341 (357)
T ss_pred HHH
Confidence 443
No 60
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.13 E-value=5.3e-09 Score=103.77 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehH---Hhh
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQL---KVL 350 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~---~lL 350 (479)
+..|+++.+. .... .+.+..+++|+.++ +.++++...++.. ..+.+.+.....+++.+.+.+++. .++
T Consensus 197 ~~~vl~~~hr-~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 272 (365)
T TIGR00236 197 KRYILLTLHR-RENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--VREPLHKHLGDSKRVHLIEPLEYLDFLNLA 272 (365)
T ss_pred CCEEEEecCc-hhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--HHHHHHHHhCCCCCEEEECCCChHHHHHHH
Confidence 3466666544 2111 24467777777664 3455554333211 111122222222688888766654 466
Q ss_pred cccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011687 351 QHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMN 430 (479)
Q Consensus 351 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~ 430 (479)
.++++ +|+-.|.. +.||+++|+|+|.++...+++. +.+ .|.+..+. .++++|.+++.+++++++.+++..+
T Consensus 273 ~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~ 343 (365)
T TIGR00236 273 ANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG-TDKENITKAAKRLLTDPDEYKKMSN 343 (365)
T ss_pred HhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC-CCHHHHHHHHHHHHhChHHHHHhhh
Confidence 77777 89877644 7999999999999876555552 334 47776553 6889999999999988877765543
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.12 E-value=7.3e-08 Score=93.74 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCceEEeeee-hHHhhcccCccceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHHHhc-ceeeeCCCCHH
Q 011687 336 RQGKVVPWAP-QLKVLQHNAVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWK-IGIRVNGFGKR 409 (479)
Q Consensus 336 ~nv~~~~~~p-q~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~G-vg~~~~~~~~~ 409 (479)
.++.+.++.. -..++..+++ +|.-.. .+++.||+++|+|+|+.+..+.+ ..+.+ -| .|..++..+.+
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~~~~~ 307 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPNGDVE 307 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCCCCHH
Confidence 5666666633 3558888887 776542 57899999999999987655433 23334 35 88888878899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 011687 410 DIEDGLKKLKEDSEMKHRLMNLYMRTM 436 (479)
Q Consensus 410 ~i~~~i~~vl~~~~~~~~a~~l~~~~~ 436 (479)
++++++.++++|++.++++.+-+..+.
T Consensus 308 ~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 308 ALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999887766655544333
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.11 E-value=1.3e-07 Score=93.45 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCceEEeeee-hH---HhhcccCccceEecc----chhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCC
Q 011687 336 RQGKVVPWAP-QL---KVLQHNAVGFYLTHC----GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFG 407 (479)
Q Consensus 336 ~nv~~~~~~p-q~---~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~ 407 (479)
.++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+.+ -+.|..++..+
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~~~ 316 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKPGD 316 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCCCC
Confidence 6788889998 43 46888888 77743 358999999999999987653 44445666 46787777788
Q ss_pred HHHHHHHHHHHhcCHHHHHH
Q 011687 408 KRDIEDGLKKLKEDSEMKHR 427 (479)
Q Consensus 408 ~~~i~~~i~~vl~~~~~~~~ 427 (479)
.+++++++.+++++++..++
T Consensus 317 ~~~~~~~l~~l~~~~~~~~~ 336 (365)
T cd03825 317 PEDLAEGIEWLLADPDEREE 336 (365)
T ss_pred HHHHHHHHHHHHhCHHHHHH
Confidence 99999999999988764433
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.11 E-value=2.8e-08 Score=95.42 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=159.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc--ccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI--HNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~--~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
|||.|--. ...|+.-+..++++|.++||+|.+.+-+.. .+.+.. .|+++..+...- . +...-+....
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~g-~----~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL-----YGIDYIVIGKHG-D----SLYGKLLESI 69 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCCC-C----CHHHHHHHHH
Confidence 55555543 334999999999999999999999997642 234444 788888776321 1 1111111111
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCcccc
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLES 168 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~ 168 (479)
. -...+.+++++. +||++|+-. .+.+..+|.-+|+|+|.+..+....... .-..|..+.
T Consensus 70 ~-R~~~l~~~~~~~----~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~---------~Lt~Pla~~------ 128 (335)
T PF04007_consen 70 E-RQYKLLKLIKKF----KPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQN---------RLTLPLADV------ 128 (335)
T ss_pred H-HHHHHHHHHHhh----CCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccc---------eeehhcCCe------
Confidence 1 111233344444 999999764 6778889999999999985542111100 000000000
Q ss_pred ccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEE-EcCchhhhhhhhhhhhhcccccccCCCceeEe
Q 011687 169 TARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLL-VNSFPEEYMDDIKQQYHHSKGATLCRPKVLLV 247 (479)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~v 247 (479)
...| ..+ -......+. .+ ..+. ++.+.++ .++
T Consensus 129 --i~~P-----------~~~---------~~~~~~~~G--~~-~~i~~y~G~~E~----------------------ayl 161 (335)
T PF04007_consen 129 --IITP-----------EAI---------PKEFLKRFG--AK-NQIRTYNGYKEL----------------------AYL 161 (335)
T ss_pred --eECC-----------ccc---------CHHHHHhcC--Cc-CCEEEECCeeeE----------------------Eee
Confidence 0000 000 000000000 00 1111 2222211 111
Q ss_pred ccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCcccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCC
Q 011687 248 GPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSP---IGEEKVKTLALTLEALGLPFIWVLGFAWREGL 324 (479)
Q Consensus 248 Gpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~---~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l 324 (479)
=| +..+.++.+-+. -++++.|++=+.++.+. ...+.+..+++.+++.+..++..-....+
T Consensus 162 ~~-------------F~Pd~~vl~~lg-~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~--- 224 (335)
T PF04007_consen 162 HP-------------FKPDPEVLKELG-LDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ--- 224 (335)
T ss_pred cC-------------CCCChhHHHHcC-CCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch---
Confidence 11 222333333344 23567888888774332 33456778888898887764333322211
Q ss_pred ChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee
Q 011687 325 PDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV 403 (479)
Q Consensus 325 ~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~ 403 (479)
++ +.+. -++.+. .-+.-.+||.++++ ||+-|| .-..||...|+|.|.+ +.++-...=+.+.+ .|. ..
T Consensus 225 ~~-~~~~----~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl--l~ 292 (335)
T PF04007_consen 225 RE-LFEK----YGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGL--LY 292 (335)
T ss_pred hh-HHhc----cCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC--eE
Confidence 11 1111 123343 44566689999998 999777 7888999999999975 22232223344666 565 33
Q ss_pred CCCCHHHHHHHHHHHh
Q 011687 404 NGFGKRDIEDGLKKLK 419 (479)
Q Consensus 404 ~~~~~~~i~~~i~~vl 419 (479)
.-.+.+++.+.+.+.+
T Consensus 293 ~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 293 HSTDPDEIVEYVRKNL 308 (335)
T ss_pred ecCCHHHHHHHHHHhh
Confidence 3366777777554443
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.10 E-value=1.7e-07 Score=92.17 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=65.8
Q ss_pred CCceEEeeeehHH---hhcccCccceE----eccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYL----THCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I----~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
+||.+.+++++.+ ++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+.+ .+.|..++..+.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~~~~ 331 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPPGDP 331 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECCCCH
Confidence 7888899998754 6777887 55 235568899999999999987654 45566777 677888888899
Q ss_pred HHHHHHHHHHhcCHHH
Q 011687 409 RDIEDGLKKLKEDSEM 424 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~ 424 (479)
+++.+++.+++++++.
T Consensus 332 ~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 332 EALAEAILRLLADPWL 347 (377)
T ss_pred HHHHHHHHHHhcCcHH
Confidence 9999999999988773
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.09 E-value=1.4e-07 Score=94.73 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=90.8
Q ss_pred CcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCeE-EEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHH---hhccc
Q 011687 279 NSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPFI-WVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLK---VLQHN 353 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~i-w~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~ 353 (479)
+..+++..|+ .. ....+.+-..+..+.+....+. ..+|.+.....-.+..++...+++|.+.+|+|+.+ +++.+
T Consensus 192 ~~~~i~~~gr-l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 192 DKITIVVISR-LVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CceEEEEEec-cchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 4467778888 32 2333333333333333222332 33333211100011222222236788899998654 77788
Q ss_pred CccceEec---cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHH-HH
Q 011687 354 AVGFYLTH---CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKH-RL 428 (479)
Q Consensus 354 ~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~-~a 428 (479)
++ +|.- -|. .++.||+++|+|+|+.+..+ ....+.+ |.+.... .+.+++.+++.+++++..-.. ..
T Consensus 271 d~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~ 341 (398)
T cd03796 271 HI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE-PDVESIVRKLEEAISILRTGKHDP 341 (398)
T ss_pred CE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC-CCHHHHHHHHHHHHhChhhhhhHH
Confidence 88 6642 233 49999999999999987753 3445545 3333333 478999999999996533221 11
Q ss_pred HHHHHHHcccccCCCchhHHHHHHHHHHHhhhc
Q 011687 429 MNLYMRTMGDDGARARVMNNLTGFVDDLSKLTR 461 (479)
Q Consensus 429 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 461 (479)
.+..+.+.+ .-|-+...++.++.++....
T Consensus 342 ~~~~~~~~~----~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 342 WSFHNRVKK----MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred HHHHHHHHh----hCCHHHHHHHHHHHHHHHhc
Confidence 111222222 13355666666666666543
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.05 E-value=1.2e-07 Score=96.23 Aligned_cols=94 Identities=10% Similarity=0.003 Sum_probs=68.5
Q ss_pred CceEEeeeeh-HHhhcccCccceEec-----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 337 QGKVVPWAPQ-LKVLQHNAVGFYLTH-----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 337 nv~~~~~~pq-~~lL~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
+|++.+...+ ..+++.+|+ ++.. ||..++.||+++|+|+|+-|...++......+.+ .|++..+ -+.++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~--~d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV--EDAED 377 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE--CCHHH
Confidence 4455554433 457778887 4331 3444699999999999999998888888888877 6877765 46899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 011687 411 IEDGLKKLKEDSEMKHRLMNLYMRT 435 (479)
Q Consensus 411 i~~~i~~vl~~~~~~~~a~~l~~~~ 435 (479)
+++++.++++|++.+++..+-+.+.
T Consensus 378 La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 378 LAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999887666555444443
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.04 E-value=2.9e-07 Score=92.20 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=63.4
Q ss_pred CCceEEeeeehH---HhhcccCccceEecc---c-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQL---KVLQHNAVGFYLTHC---G-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~---~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
++|.+.+++|.. .++..+++ ++... | ..++.||+++|+|+|+.-.. .....+.+ -+.|..++. +.
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~~-~~ 351 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCEP-TP 351 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeCC-CH
Confidence 789999999976 46778887 66421 1 36789999999999997554 34455666 467877765 89
Q ss_pred HHHHHHHHHHhcCHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHR 427 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~ 427 (479)
++++++|.+++++++.+++
T Consensus 352 ~~~a~~i~~l~~~~~~~~~ 370 (392)
T cd03805 352 EEFAEAMLKLANDPDLADR 370 (392)
T ss_pred HHHHHHHHHHHhChHHHHH
Confidence 9999999999988764443
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.03 E-value=8.9e-09 Score=102.04 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=89.4
Q ss_pred CCcEEEEEeCCccccC-CHHHHHHHHHHHHhCCCC-eEEEEcCCcCCCCChhhHh---hhcC-CCCceEEeeeehH---H
Q 011687 278 PNSVIYISFGSWVSPI-GEEKVKTLALTLEALGLP-FIWVLGFAWREGLPDGYLD---RVSN-SRQGKVVPWAPQL---K 348 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~-~~~~~~~l~~al~~~~~~-~iw~~~~~~~~~l~~~~~~---~~~~-~~nv~~~~~~pq~---~ 348 (479)
+++.|++++|+ .... ..+.+..+++|++.+..+ +.+++..... ..+.+.+ +... .+++.+.+..++. .
T Consensus 197 ~~~~vlv~~~r-~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 273 (363)
T cd03786 197 PKKYILVTLHR-VENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPLGYLYFLL 273 (363)
T ss_pred CCCEEEEEeCC-ccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCcCHHHHHH
Confidence 45678888887 4433 466788888888876432 4444432211 1112221 1110 1677777666544 4
Q ss_pred hhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHH
Q 011687 349 VLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHR 427 (479)
Q Consensus 349 lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~ 427 (479)
++..+++ ||+..| |.+.||++.|+|+|+++...+ +.-+.+ .|++..+.. +.++|.+++.++++++..+++
T Consensus 274 l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~~-~~~~i~~~i~~ll~~~~~~~~ 343 (363)
T cd03786 274 LLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVGT-DPEAILAAIEKLLSDEFAYSL 343 (363)
T ss_pred HHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecCC-CHHHHHHHHHHHhcCchhhhc
Confidence 5777888 999999 888899999999999874322 334555 577766643 589999999999987765544
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.03 E-value=7.1e-07 Score=87.83 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=84.7
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhCC---CCe-EEEEcCCcCCCCChhhH---hhhcCCCCceEEeeeehHH--
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEALG---LPF-IWVLGFAWREGLPDGYL---DRVSNSRQGKVVPWAPQLK-- 348 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~---~~~-iw~~~~~~~~~l~~~~~---~~~~~~~nv~~~~~~pq~~-- 348 (479)
+++.+++.+|+ .. ...-...+++++..+. ..+ ++.+|.+... ....+. ++....++|.+.+|+++.+
T Consensus 201 ~~~~~i~~~G~-~~--~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 276 (375)
T cd03821 201 PDKRIILFLGR-LH--PKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG-YRAELKQIAAALGLEDRVTFTGMLYGEDKA 276 (375)
T ss_pred CCCcEEEEEeC-cc--hhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc-hHHHHHHHHHhcCccceEEEcCCCChHHHH
Confidence 34467778888 33 2233444555554432 233 3344432111 111111 1222237888889999644
Q ss_pred -hhcccCccceEecc----chhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHH
Q 011687 349 -VLQHNAVGFYLTHC----GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSE 423 (479)
Q Consensus 349 -lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~ 423 (479)
++..+++ +|.-. -..++.||+++|+|+|+.+.. .....+.+ +.|...+. +.++++++|.+++++++
T Consensus 277 ~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 277 AALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-DVDALAAALRRALELPQ 347 (375)
T ss_pred HHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC-ChHHHHHHHHHHHhCHH
Confidence 5778888 55432 257899999999999997654 34444444 66666544 44999999999998876
Q ss_pred HHHHHHHHHHHH
Q 011687 424 MKHRLMNLYMRT 435 (479)
Q Consensus 424 ~~~~a~~l~~~~ 435 (479)
.+++..+-+.+.
T Consensus 348 ~~~~~~~~~~~~ 359 (375)
T cd03821 348 RLKAMGENGRAL 359 (375)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.00 E-value=3.6e-07 Score=90.05 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=64.4
Q ss_pred CCceEE-eeeehH---HhhcccCccceEe--c----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC
Q 011687 336 RQGKVV-PWAPQL---KVLQHNAVGFYLT--H----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG 405 (479)
Q Consensus 336 ~nv~~~-~~~pq~---~lL~~~~~~~~I~--H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~ 405 (479)
++|.+. .|+|+. .+++.+++ +|. . |..+++.||+++|+|+|+.+..+ ...+.+ -+.|..++.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 688888 458864 47777887 663 2 44578999999999999987653 344566 578888877
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHH
Q 011687 406 FGKRDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~~~~~~~~a~ 429 (479)
-+.+++++++.+++++++.+++..
T Consensus 319 ~d~~~~~~~l~~l~~~~~~~~~~~ 342 (366)
T cd03822 319 GDPAALAEAIRRLLADPELAQALR 342 (366)
T ss_pred CCHHHHHHHHHHHHcChHHHHHHH
Confidence 889999999999998866544433
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.94 E-value=1.4e-06 Score=85.71 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=84.6
Q ss_pred CCcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCe-EEEEcCCcCC-CCChhh---HhhhcCCCCceEEeeeeh-HHhh
Q 011687 278 PNSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPF-IWVLGFAWRE-GLPDGY---LDRVSNSRQGKVVPWAPQ-LKVL 350 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~-~l~~~~---~~~~~~~~nv~~~~~~pq-~~lL 350 (479)
++..+++..|+ .. ....+.+-..+..+.+.+..+ ++.+|.+... ...+.+ .++....++|.+.+|.+. ..++
T Consensus 183 ~~~~~i~~~Gr-~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l 261 (355)
T cd03819 183 KGKPVILLPGR-LTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAY 261 (355)
T ss_pred CCceEEEEeec-cccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHH
Confidence 34467777787 43 334455555555554432233 3444433211 111111 111111267888888543 4588
Q ss_pred cccCccceEec----cc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHh-cCHHH
Q 011687 351 QHNAVGFYLTH----CG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLK-EDSEM 424 (479)
Q Consensus 351 ~~~~~~~~I~H----gG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl-~~~~~ 424 (479)
..+++ +|+- -| .+++.||+++|+|+|+.... .....+.+ -+.|..++.-+.+++.++|..++ .+++.
T Consensus 262 ~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~ 334 (355)
T cd03819 262 ALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRP-GETGLLVPPGDAEALAQALDQILSLLPEG 334 (355)
T ss_pred HhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHH
Confidence 88888 5532 23 46999999999999987543 45566666 46888887789999999996555 45554
Q ss_pred HHHH
Q 011687 425 KHRL 428 (479)
Q Consensus 425 ~~~a 428 (479)
+++.
T Consensus 335 ~~~~ 338 (355)
T cd03819 335 RAKM 338 (355)
T ss_pred HHHH
Confidence 4433
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.94 E-value=2.1e-06 Score=92.81 Aligned_cols=402 Identities=13% Similarity=0.077 Sum_probs=202.8
Q ss_pred CCCEEEEecCC---------------CCCCHHHHHHHHHHHHhCC--CeEEEEcCCcccccc--------cc--------
Q 011687 9 KKNKILMVPYP---------------AQGHVTPMHKLASILTSRG--FEPIVITPEFIHNQI--------TS-------- 55 (479)
Q Consensus 9 ~~~~i~~~~~~---------------~~gH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~i--------~~-------- 55 (479)
++|.|+++... +.|+..=.+.||++|+++| |+|.++|-...-+.+ +.
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 46777777632 2346666789999999998 999999974321111 00
Q ss_pred ---CCCCCCCeEEEeCCCCCCCC--CCCCHHHHHHHHHHhchHHHHHH----HHHhh--ccCCceEEEeCCCc--ccHHH
Q 011687 56 ---SMDPRSEISCMSIPDGLEKN--EPKDFFAIEKVIENIMPIHLERL----INKIN--EDGRVACVVVDLLA--SSAIG 122 (479)
Q Consensus 56 ---~~~~~~g~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~----l~~l~--~~~~~D~vi~D~~~--~~~~~ 122 (479)
......|+..+.+|.+.... ....+..++..+.+.+...+.++ .+++. ....||+|-+.... .++..
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~ 327 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAAL 327 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHH
Confidence 00112478888888665532 22234444444444333333322 22221 11149999988533 56789
Q ss_pred HHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccchhHHHHHH
Q 011687 123 VACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWS 202 (479)
Q Consensus 123 ~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (479)
+++.+|||+|....+........ ....+.. ........+ ....+..
T Consensus 328 L~~~lgVP~V~T~HSLgr~K~~~-----ll~~g~~----------------------~~~~~~~~y-------~~~~Ri~ 373 (1050)
T TIGR02468 328 LSGALNVPMVLTGHSLGRDKLEQ-----LLKQGRM----------------------SKEEINSTY-------KIMRRIE 373 (1050)
T ss_pred HHHhhCCCEEEECccchhhhhhh-----hcccccc----------------------ccccccccc-------chHHHHH
Confidence 99999999888644321110000 0000000 000000000 0011111
Q ss_pred HHHhhhcCCceEEEcCchhhhhhhhhhhh--hcc-----------ccccc---CCCc--eeEecccccc--cc--ccC--
Q 011687 203 RTLERSRNLKWLLVNSFPEEYMDDIKQQY--HHS-----------KGATL---CRPK--VLLVGPLSKH--AT--IAK-- 258 (479)
Q Consensus 203 ~~~~~~~~~~~~l~~s~~~l~~~~~~~~~--~~~-----------~~~~~---~~~~--v~~vGpl~~~--~~--~~~-- 258 (479)
.....+..++.++..|..+.+--... | +.+ .+.+- +.++ |++-|-=... +. ...
T Consensus 374 ~Ee~~l~~Ad~VIasT~qE~~eq~~l--Y~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~ 451 (1050)
T TIGR02468 374 AEELSLDASEIVITSTRQEIEEQWGL--YDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGE 451 (1050)
T ss_pred HHHHHHHhcCEEEEeCHHHHHHHHHH--hccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccch
Confidence 22234567888888887776521110 1 000 00000 0123 3333411110 00 000
Q ss_pred -------CC-CCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCC-----CCeEEEEcCCcC-CCC
Q 011687 259 -------NP-SLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALG-----LPFIWVLGFAWR-EGL 324 (479)
Q Consensus 259 -------~~-~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~-----~~~iw~~~~~~~-~~l 324 (479)
.. ........+..|+. .+++ +++++.|. . .+.+-+..+++|+..+. ..+.++++.... ..+
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~r~~~-~pdk-pvIL~VGR-L--~p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l 526 (1050)
T TIGR02468 452 TEGNEEHPAKPDPPIWSEIMRFFT-NPRK-PMILALAR-P--DPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEM 526 (1050)
T ss_pred hcccccccccccchhhHHHHhhcc-cCCC-cEEEEEcC-C--ccccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhh
Confidence 00 00111224556665 2333 45667787 3 33444566677776542 234455554211 000
Q ss_pred C----------hhhHhhhcCCCCceEEeeeehHH---hhcccC--ccceEec---cc-hhHHHHHHHhCcceecccCccc
Q 011687 325 P----------DGYLDRVSNSRQGKVVPWAPQLK---VLQHNA--VGFYLTH---CG-WNSTMEAIQSGKRLLCYPVAGD 385 (479)
Q Consensus 325 ~----------~~~~~~~~~~~nv~~~~~~pq~~---lL~~~~--~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~D 385 (479)
. ..+.++....++|.+.+++++.+ ++..++ .++||+- =| -.++.||+++|+|+|+....
T Consensus 527 ~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG-- 604 (1050)
T TIGR02468 527 SSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG-- 604 (1050)
T ss_pred hccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC--
Confidence 0 01122222237788888888765 454442 1227764 23 47899999999999998765
Q ss_pred hhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 386 QFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 386 Q~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
.....++. -.-|..++.-+++.|+++|.++++++..++++.+-+.+.... -+-...++..++.+....
T Consensus 605 --G~~EII~~-g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~----FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 605 --GPVDIHRV-LDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHL----FSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred --CcHHHhcc-CCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHh
Confidence 34455556 467888887899999999999999887655554443332211 223345555555555443
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.92 E-value=7.1e-07 Score=86.86 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=86.4
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhCC---CCe-EEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhcc
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEALG---LPF-IWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQH 352 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~---~~~-iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~ 352 (479)
+++.+++..|+ .. ...-...+++++..+. ..+ +..+|.+.....-....++....+++.+.++.+. .+++..
T Consensus 187 ~~~~~i~~~g~-~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 187 PDGPVILAVGR-LS--PQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred CCceEEEEEec-ch--hhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 44577888888 43 2233444555555432 223 2333432211000112222222367888888765 458888
Q ss_pred cCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHH---HHHHHHHhcCHHHH
Q 011687 353 NAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDI---EDGLKKLKEDSEMK 425 (479)
Q Consensus 353 ~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i---~~~i~~vl~~~~~~ 425 (479)
+++ +|.- |..+++.||+++|+|+|+.... ..+..+++ -+.|...+.-+.+.+ .+.+..++++++.+
T Consensus 264 ~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 336 (353)
T cd03811 264 ADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVGDEAALAAAALALLDLLLDPELR 336 (353)
T ss_pred CCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCCCHHHHHHHHHHHHhccCChHHH
Confidence 888 6632 3457899999999999986554 66777888 688998887788888 55666666666655
Q ss_pred HHHHH
Q 011687 426 HRLMN 430 (479)
Q Consensus 426 ~~a~~ 430 (479)
+++.+
T Consensus 337 ~~~~~ 341 (353)
T cd03811 337 ERLAA 341 (353)
T ss_pred HHHHH
Confidence 44444
No 74
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.91 E-value=1.1e-06 Score=86.90 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=68.1
Q ss_pred CCceEEeeeehHH---hhcccCccceEec----------cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceee
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTH----------CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIR 402 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~ 402 (479)
+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+ -+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeEE
Confidence 7888889998755 5778888 6642 2358999999999999987765 46777777 588988
Q ss_pred eCCCCHHHHHHHHHHHhcCHHHHHHH
Q 011687 403 VNGFGKRDIEDGLKKLKEDSEMKHRL 428 (479)
Q Consensus 403 ~~~~~~~~i~~~i~~vl~~~~~~~~a 428 (479)
++..+.+++++++.+++++++.+++.
T Consensus 318 ~~~~d~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 318 VPEGDVAALAAALGRLLADPDLRARM 343 (367)
T ss_pred ECCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 88788999999999999887744433
No 75
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.87 E-value=1.5e-06 Score=85.63 Aligned_cols=145 Identities=12% Similarity=-0.019 Sum_probs=86.3
Q ss_pred CCcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCeE-EEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhcccC
Q 011687 278 PNSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPFI-WVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQHNA 354 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~i-w~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~ 354 (479)
+++.+++..|+ .. ....+.+-..+..+.+....+- +.+|.+.....-....++....+++.+.++..+ ..++..++
T Consensus 190 ~~~~~i~~vGr-~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 268 (358)
T cd03812 190 EDKFVIGHVGR-FSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMD 268 (358)
T ss_pred CCCEEEEEEec-cccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcC
Confidence 34567778888 33 3334444444444433333333 333432211000011111111267888877444 55888888
Q ss_pred ccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 011687 355 VGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMN 430 (479)
Q Consensus 355 ~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~ 430 (479)
+ +|+- |-..++.||+++|+|+|+....+ ....+++ +.|..+...++++++++|.+++++++.+++...
T Consensus 269 i--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 269 V--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLDESPEIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred E--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhh
Confidence 8 6643 44689999999999999876553 4444555 556666556689999999999999887765543
Q ss_pred H
Q 011687 431 L 431 (479)
Q Consensus 431 l 431 (479)
.
T Consensus 341 ~ 341 (358)
T cd03812 341 I 341 (358)
T ss_pred h
Confidence 3
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.87 E-value=5.7e-07 Score=88.98 Aligned_cols=137 Identities=13% Similarity=0.049 Sum_probs=85.7
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHhCCCCe-EEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh--HH---hhccc
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEALGLPF-IWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ--LK---VLQHN 353 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq--~~---lL~~~ 353 (479)
+.+++.+|. ......+.+..+++++.++...+ ++.+|.+.....-+...+.....++|.+.+|+++ .. .+..+
T Consensus 180 ~~~i~~~Gr-l~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGR-LKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEE-EecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 356677787 54333444666777777653333 3444433211000111222222378888888743 22 44456
Q ss_pred CccceEec----cchhHHHHHHHhCcceeccc-CccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHH
Q 011687 354 AVGFYLTH----CGWNSTMEAIQSGKRLLCYP-VAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEM 424 (479)
Q Consensus 354 ~~~~~I~H----gG~~s~~eal~~GvP~l~~P-~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~ 424 (479)
++ +|.. |-..++.||+++|+|+|+.- .. .....+++ -..|..++.-+.++++++|.++++|++.
T Consensus 259 d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~-~~~G~lv~~~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 259 SA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKP-GLNGELYTPGNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred cE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccC-CCceEEECCCCHHHHHHHHHHHHhCccc
Confidence 66 6643 33689999999999999876 43 23345666 4678888778999999999999988873
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.86 E-value=1e-06 Score=85.96 Aligned_cols=130 Identities=8% Similarity=0.037 Sum_probs=79.8
Q ss_pred EEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhh-HhhhcCCCCceEEeeeehHH---hhcccCcc
Q 011687 281 VIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGY-LDRVSNSRQGKVVPWAPQLK---VLQHNAVG 356 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~-~~~~~~~~nv~~~~~~pq~~---lL~~~~~~ 356 (479)
.+.+..|. . ...+-...+++++++.+.++++ +|.+......... .......++|.+.+++++.+ +++.+++-
T Consensus 172 ~~i~~~Gr-~--~~~Kg~~~li~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~ 247 (335)
T cd03802 172 DYLLFLGR-I--SPEKGPHLAIRAARRAGIPLKL-AGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARAL 247 (335)
T ss_pred CEEEEEEe-e--ccccCHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEE
Confidence 34556677 3 2333445677788877766654 4433211100111 11110127899999999854 67788872
Q ss_pred ceEe--ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 357 FYLT--HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 357 ~~I~--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
++-+ +-| ..++.||+++|+|+|+.... .+...+.+ -..|..++. .+++++++.++++.
T Consensus 248 v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 248 LFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVDS--VEELAAAVARADRL 308 (335)
T ss_pred EeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeCC--HHHHHHHHHHHhcc
Confidence 2222 234 35899999999999987664 44555666 346777765 99999999988754
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.85 E-value=3.8e-06 Score=82.30 Aligned_cols=81 Identities=15% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCceEEeeeeh-HHhhcccCccceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
+++.+.+.... ..++..+++ +|.... .+++.||+++|+|+|+.... .+...+.+ .|..++.-+.++
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~~~~~~~ 321 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVPPGDPEA 321 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeCCCCHHH
Confidence 56666654443 568888888 776544 48999999999999986543 45555544 455555567999
Q ss_pred HHHHHHHHhcCHHHH
Q 011687 411 IEDGLKKLKEDSEMK 425 (479)
Q Consensus 411 i~~~i~~vl~~~~~~ 425 (479)
+.+++.+++++++.+
T Consensus 322 l~~~i~~l~~~~~~~ 336 (365)
T cd03807 322 LAEAIEALLADPALR 336 (365)
T ss_pred HHHHHHHHHhChHHH
Confidence 999999999886543
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.85 E-value=1.6e-06 Score=85.23 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=64.6
Q ss_pred CCceEEeeeehHH---hhcccCccceEe----------ccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceee
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLT----------HCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIR 402 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~----------HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~ 402 (479)
+||.+.+++|+.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+++ ...|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceEE
Confidence 7899999998654 6677887 665 23458999999999999987654 23345666 458888
Q ss_pred eCCCCHHHHHHHHHHHhcCHHHHH
Q 011687 403 VNGFGKRDIEDGLKKLKEDSEMKH 426 (479)
Q Consensus 403 ~~~~~~~~i~~~i~~vl~~~~~~~ 426 (479)
++.-+.++++++|.++++++....
T Consensus 309 ~~~~~~~~l~~~i~~~~~~~~~~~ 332 (355)
T cd03799 309 VPPGDPEALADAIERLLDDPELRR 332 (355)
T ss_pred eCCCCHHHHHHHHHHHHhCHHHHH
Confidence 877789999999999998876533
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.84 E-value=8.8e-07 Score=87.26 Aligned_cols=142 Identities=8% Similarity=0.012 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCcCCCCChhhH---hhhcCCCCceEEeeeeh-HH
Q 011687 278 PNSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWVLGFAWREGLPDGYL---DRVSNSRQGKVVPWAPQ-LK 348 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~~~l~~~~~---~~~~~~~nv~~~~~~pq-~~ 348 (479)
++..+++..|+ .. +.+-+..+++++.++ +.++++ ++.+.. .+.+. ++....+|+.+.++..+ ..
T Consensus 186 ~~~~~~l~~g~-~~--~~kg~~~li~a~~~l~~~~~~~~l~i-~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 186 NDTFVILAVGR-LV--EAKDYPNLLKAFAKLLSDYLDIKLLI-AGDGPL---RATLERLIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CCCEEEEEEee-Cc--hhcCcHHHHHHHHHHHhhCCCeEEEE-EcCCCc---HHHHHHHHHhcCCCCcEEEecccccHHH
Confidence 34577888887 32 233344455555432 244444 333221 11221 11111267888877654 56
Q ss_pred hhcccCccceEecc----chhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHh-cCHH
Q 011687 349 VLQHNAVGFYLTHC----GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLK-EDSE 423 (479)
Q Consensus 349 lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl-~~~~ 423 (479)
++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+++ .|.. +...+.+++++++.+++ .++.
T Consensus 259 ~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~--~~~~~~~~~~~~i~~ll~~~~~ 329 (360)
T cd04951 259 YYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLI--VPISDPEALANKIDEILKMSGE 329 (360)
T ss_pred HHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceE--eCCCCHHHHHHHHHHHHhCCHH
Confidence 8888888 65532 257899999999999974 44456666666 4544 44478899999999998 5566
Q ss_pred HHHHHHHHHHHH
Q 011687 424 MKHRLMNLYMRT 435 (479)
Q Consensus 424 ~~~~a~~l~~~~ 435 (479)
.++...+-++.+
T Consensus 330 ~~~~~~~~~~~~ 341 (360)
T cd04951 330 ERDIIGARRERI 341 (360)
T ss_pred HHHHHHHHHHHH
Confidence 655444433333
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.83 E-value=1e-05 Score=80.84 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=85.3
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhC--CCCeEEEEcCCcCCCCChhhHhh---hcC-CCCceEE-eeeehHH---
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEAL--GLPFIWVLGFAWREGLPDGYLDR---VSN-SRQGKVV-PWAPQLK--- 348 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~--~~~~iw~~~~~~~~~l~~~~~~~---~~~-~~nv~~~-~~~pq~~--- 348 (479)
..++++..|+ .. +.+-+..+++|+..+ +.+++++.++.....+.+.+.+. ..+ ..++... +++++.+
T Consensus 200 ~~~~i~~~Gr-l~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 276 (388)
T TIGR02149 200 SRPYILFVGR-IT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVE 276 (388)
T ss_pred CceEEEEEcc-cc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHH
Confidence 3456777787 33 234456666777665 34554444432211111111111 110 0235544 6777644
Q ss_pred hhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH------HHHHHHHHHH
Q 011687 349 VLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK------RDIEDGLKKL 418 (479)
Q Consensus 349 lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~------~~i~~~i~~v 418 (479)
++..+|+ +|.- |...++.||+++|+|+|+.... .....+++ -+.|..++.-+. +++.++|.++
T Consensus 277 ~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~-~~~G~~~~~~~~~~~~~~~~l~~~i~~l 349 (388)
T TIGR02149 277 LLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVD-GETGFLVPPDNSDADGFQAELAKAINIL 349 (388)
T ss_pred HHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhC-CCceEEcCCCCCcccchHHHHHHHHHHH
Confidence 6788888 7653 2246779999999999987654 56667777 577888876555 8999999999
Q ss_pred hcCHHHHHHH
Q 011687 419 KEDSEMKHRL 428 (479)
Q Consensus 419 l~~~~~~~~a 428 (479)
++|++.+++.
T Consensus 350 ~~~~~~~~~~ 359 (388)
T TIGR02149 350 LADPELAKKM 359 (388)
T ss_pred HhCHHHHHHH
Confidence 9887655443
No 82
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.81 E-value=1.9e-05 Score=80.36 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=87.0
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCcC-CCCCh----------hhHhhhcCCCCceEEee
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWVLGFAWR-EGLPD----------GYLDRVSNSRQGKVVPW 343 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~-~~l~~----------~~~~~~~~~~nv~~~~~ 343 (479)
..+++..|. . .+.+-+..+++|+..+ ..+++++++.+.. ..+.+ +..++....++|.+.++
T Consensus 248 ~~~i~~vGr-l--~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~ 324 (439)
T TIGR02472 248 KPPILAISR-P--DRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKH 324 (439)
T ss_pred CcEEEEEcC-C--cccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 356777788 3 2334455666666532 2344444554321 11111 11122222267877788
Q ss_pred eehHHh---hccc----CccceEecc---c-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHH
Q 011687 344 APQLKV---LQHN----AVGFYLTHC---G-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIE 412 (479)
Q Consensus 344 ~pq~~l---L~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~ 412 (479)
+++.++ ++.+ ++ ||... | ..+++||+++|+|+|+.... .....+.+ -..|..++.-++++++
T Consensus 325 ~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~-~~~G~lv~~~d~~~la 397 (439)
T TIGR02472 325 HRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIAN-CRNGLLVDVLDLEAIA 397 (439)
T ss_pred CCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcC-CCcEEEeCCCCHHHHH
Confidence 887654 5544 55 77643 3 46999999999999988764 45566666 4678888878899999
Q ss_pred HHHHHHhcCHHHHHHH
Q 011687 413 DGLKKLKEDSEMKHRL 428 (479)
Q Consensus 413 ~~i~~vl~~~~~~~~a 428 (479)
++|.++++|++.+++.
T Consensus 398 ~~i~~ll~~~~~~~~~ 413 (439)
T TIGR02472 398 SALEDALSDSSQWQLW 413 (439)
T ss_pred HHHHHHHhCHHHHHHH
Confidence 9999999888754443
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.81 E-value=1.2e-05 Score=80.00 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=63.1
Q ss_pred CCceEEeeeeh-HHhhcccCccceEe--c--cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYLT--H--CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
.++.+.++..+ ..+++.+|+ +|. + |-..++.||+++|+|+|+.... .+...+++ -..|..++.-+.++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~-~~~g~~~~~~d~~~ 327 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQH-GVTGALVPPGDAVA 327 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcC-CCceEEeCCCCHHH
Confidence 45665555433 568888888 663 3 4468999999999999997764 46666767 46788887788999
Q ss_pred HHHHHHHHhcCHHHHH
Q 011687 411 IEDGLKKLKEDSEMKH 426 (479)
Q Consensus 411 i~~~i~~vl~~~~~~~ 426 (479)
+++++.+++++++.++
T Consensus 328 la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 328 LARALQPYVSDPAARR 343 (374)
T ss_pred HHHHHHHHHhCHHHHH
Confidence 9999999998876544
No 84
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.75 E-value=4.2e-05 Score=81.21 Aligned_cols=88 Identities=9% Similarity=0.098 Sum_probs=61.7
Q ss_pred CCceEEeee-eh---HHhhcc----cCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee
Q 011687 336 RQGKVVPWA-PQ---LKVLQH----NAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV 403 (479)
Q Consensus 336 ~nv~~~~~~-pq---~~lL~~----~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~ 403 (479)
++|.+.++. +. .+++.+ +++ ||.- +---++.||+++|+|+|+.-.. ..+..+++ -.-|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~d-g~tGfLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQD-GVSGFHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEEe
Confidence 677777764 32 234432 244 7743 2246899999999999987665 57777878 4679999
Q ss_pred CCCCHHHHHHHHHHHh----cCHHHHHHHHH
Q 011687 404 NGFGKRDIEDGLKKLK----EDSEMKHRLMN 430 (479)
Q Consensus 404 ~~~~~~~i~~~i~~vl----~~~~~~~~a~~ 430 (479)
+.-++++++++|.+++ +|++.+++..+
T Consensus 692 dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~ 722 (784)
T TIGR02470 692 DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722 (784)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888999999998875 57766554443
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.75 E-value=7.7e-06 Score=80.66 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=75.4
Q ss_pred EEEEeCCccccCCHHHHHHHHHHHHhCCCCe-EEEEcCCcCC-CCChhhHhhhcCCCCceEEeeeehHH---hhcccCcc
Q 011687 282 IYISFGSWVSPIGEEKVKTLALTLEALGLPF-IWVLGFAWRE-GLPDGYLDRVSNSRQGKVVPWAPQLK---VLQHNAVG 356 (479)
Q Consensus 282 Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~-~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~ 356 (479)
.++.+|+ .. +..-+..+++|+.++...+ ++.+|.+... ..-+.+.+.....++|.+.+++|+.+ ++..+++
T Consensus 195 ~i~~~G~-~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 270 (363)
T cd04955 195 YYLLVGR-IV--PENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL- 270 (363)
T ss_pred EEEEEec-cc--ccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE-
Confidence 3456788 33 2334555677777664322 3444443111 11111111222237899999999865 5556666
Q ss_pred ceEeccch-----hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 011687 357 FYLTHCGW-----NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 357 ~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~ 429 (479)
++.+.-. +++.||+++|+|+|+..... +...+++ .|. .++.- +.+++++.+++++++..++..
T Consensus 271 -~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~-~g~--~~~~~--~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 271 -FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD-KAI--YFKVG--DDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred -EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC-Cee--EecCc--hHHHHHHHHHHhCHHHHHHHH
Confidence 5554332 67999999999999876542 2222333 232 23222 229999999998876544433
No 86
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.72 E-value=3.5e-06 Score=82.92 Aligned_cols=90 Identities=8% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCceEEeeeehHH---hhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
++|.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ . |..+...+.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~-~--~~~~~~~~~ 323 (365)
T cd03809 253 DRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD-A--ALYFDPLDP 323 (365)
T ss_pred CeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC-c--eeeeCCCCH
Confidence 7888889998764 6777887 5432 3356899999999999986553 22222333 2 444555789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHRLMNLYMR 434 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~a~~l~~~ 434 (479)
+++.+++.++++|++.+.++.+-+..
T Consensus 324 ~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 324 EALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999998887766655543
No 87
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.70 E-value=2e-05 Score=79.25 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=87.1
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhC---CCCe-EEEEcCCcCC-CCChhhHhhhcCCCCceEEeeeehHH---hh
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEAL---GLPF-IWVLGFAWRE-GLPDGYLDRVSNSRQGKVVPWAPQLK---VL 350 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~---~~~~-iw~~~~~~~~-~l~~~~~~~~~~~~nv~~~~~~pq~~---lL 350 (479)
.+..+++.|. .. +.+-+..+++|++.+ +..+ ++.+|.+... .+ ....++....++|.+.+|+|+.+ ++
T Consensus 221 ~~~~il~vGr-l~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l-~~~~~~~~l~~~V~~~G~~~~~el~~~l 296 (406)
T PRK15427 221 TPLEIISVAR-LT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRL-RTLIEQYQLEDVVEMPGFKPSHEVKAML 296 (406)
T ss_pred CCeEEEEEeC-cc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHH-HHHHHHcCCCCeEEEeCCCCHHHHHHHH
Confidence 3456677788 33 223344455555433 3334 3344433211 11 11122222237889999999865 67
Q ss_pred cccCccceEec---------cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhc
Q 011687 351 QHNAVGFYLTH---------CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKE 420 (479)
Q Consensus 351 ~~~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~ 420 (479)
..+++ ||.- -|. .++.||+++|+|+|+.... .....+++ -..|..++.-+.++++++|.++++
T Consensus 297 ~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~-~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 297 DDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEA-DKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred HhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcC-CCceEEeCCCCHHHHHHHHHHHHh
Confidence 78888 6652 244 6789999999999987654 45566777 467888877889999999999998
Q ss_pred -CHHHHHH
Q 011687 421 -DSEMKHR 427 (479)
Q Consensus 421 -~~~~~~~ 427 (479)
|++.+++
T Consensus 370 ~d~~~~~~ 377 (406)
T PRK15427 370 LDTDELAP 377 (406)
T ss_pred CCHHHHHH
Confidence 8774443
No 88
>PLN02275 transferase, transferring glycosyl groups
Probab=98.68 E-value=1.8e-05 Score=78.64 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCceEE-eeeehHH---hhcccCccceEe-c-----cc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeC
Q 011687 336 RQGKVV-PWAPQLK---VLQHNAVGFYLT-H-----CG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVN 404 (479)
Q Consensus 336 ~nv~~~-~~~pq~~---lL~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~ 404 (479)
+|+.+. .|+|+.+ +++.+|+ ||. + -| .+++.||+++|+|+|+.... .+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccC-CCCeEEEC
Confidence 456665 4788766 4888888 763 1 12 36899999999999997543 46677777 57898886
Q ss_pred CCCHHHHHHHHHHHh
Q 011687 405 GFGKRDIEDGLKKLK 419 (479)
Q Consensus 405 ~~~~~~i~~~i~~vl 419 (479)
+.++++++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 5889999998775
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=7.2e-06 Score=80.99 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=82.8
Q ss_pred CCcEEEEEeCCccc---cCCHHHHHHHHHHHHhCCCCeEEEEcCCcC-C-CCChhhHhhhcCCCCceEEeeeeh---HHh
Q 011687 278 PNSVIYISFGSWVS---PIGEEKVKTLALTLEALGLPFIWVLGFAWR-E-GLPDGYLDRVSNSRQGKVVPWAPQ---LKV 349 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~~-~-~l~~~~~~~~~~~~nv~~~~~~pq---~~l 349 (479)
+++.|+|++-. .. ....+.+..+++++...+.++++.+..... . .+-+.+.+-....+|+.+++-+++ ..+
T Consensus 200 ~~~~vlvt~Hp-~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 200 DKPYALVTFHP-VTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCCEEEEEeCC-CcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 34688888854 32 244678999999998887666665532110 0 011111111100167888876665 447
Q ss_pred hcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHH
Q 011687 350 LQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKH 426 (479)
Q Consensus 350 L~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~ 426 (479)
+.++++ +|+-++.+- .||.+.|+|+|.+- +-+ .-+ + .|-...+-..++++|.+++.+++ ++.+++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~vg~~~~~I~~a~~~~~-~~~~~~ 343 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVIDVDPDKEEIVKAIEKLL-DPAFKK 343 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEEeCCCHHHHHHHHHHHh-ChHHHH
Confidence 888888 998875555 99999999999774 211 111 2 24333322578999999999965 444433
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.62 E-value=6.1e-06 Score=80.59 Aligned_cols=189 Identities=19% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCceeEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEE
Q 011687 241 RPKVLLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIW 314 (479)
Q Consensus 241 ~~~v~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw 314 (479)
+-++.||| |+...-. . ........+.+ -..++++|-+--|| =...-...+..++++.+.+ +.++++
T Consensus 152 g~~~~~VGHPl~d~~~-----~-~~~~~~~~~~~-l~~~~~iIaLLPGS-R~~EI~rllP~~l~aa~~l~~~~p~l~fvv 223 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVK-----P-EPDRAEAREKL-LDPDKPIIALLPGS-RKSEIKRLLPIFLEAAKLLKKQRPDLQFVV 223 (373)
T ss_pred CCCeEEECCcchhhhc-----c-CCCHHHHHHhc-CCCCCcEEEEeCCC-CHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 67899999 8876532 1 11122222232 23567799999999 2222234455566766543 334544
Q ss_pred EEcCCcCCCCChhhHhhhcCCCCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecc-cCccchhhHHHH
Q 011687 315 VLGFAWREGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY-PVAGDQFINCAY 392 (479)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~r 392 (479)
.+........-........ .++.+. ..-.-.+++..+++ .+.-.| ..|+|+...|+|++++ -...=....|++
T Consensus 224 p~a~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~ 298 (373)
T PF02684_consen 224 PVAPEVHEELIEEILAEYP--PDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKR 298 (373)
T ss_pred ecCCHHHHHHHHHHHHhhC--CCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHH
Confidence 4432211100001111111 333333 22345678888887 444333 5689999999999876 333334456666
Q ss_pred HHHHhcc-ee-------ee-----C-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcccccCCC
Q 011687 393 IVKMWKI-GI-------RV-----N-GFGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMGDDGARA 443 (479)
Q Consensus 393 v~~~~Gv-g~-------~~-----~-~~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~~~~~g~ 443 (479)
+.+ ... |+ .+ . +.|++.|.+++.++|+|++.++......+.+.+..+.|.
T Consensus 299 lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 362 (373)
T PF02684_consen 299 LVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQLLGPGA 362 (373)
T ss_pred hhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcc
Confidence 654 332 11 11 1 289999999999999998777766666666666544443
No 91
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.61 E-value=7.7e-06 Score=79.40 Aligned_cols=147 Identities=10% Similarity=0.012 Sum_probs=91.4
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhCCCC-eEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccc
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEALGLP-FIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGF 357 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~-~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 357 (479)
+++|.+--|| -...-...+..++++..++..+ ..+.+..... . +.+.+.......+.+++ .-.+++..+|+
T Consensus 167 ~~~I~llPGS-R~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl-- 238 (347)
T PRK14089 167 EGTIAFMPGS-RKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDISEFEISY--DTHKALLEAEF-- 238 (347)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--
Confidence 3688899999 4433345556556666655322 2333322111 1 22222221001222332 34678889888
Q ss_pred eEeccchhHHHHHHHhCcceecc-cCccchhhHHHHHH---HHhcceeee--------------CC-CCHHHHHHHHHHH
Q 011687 358 YLTHCGWNSTMEAIQSGKRLLCY-PVAGDQFINCAYIV---KMWKIGIRV--------------NG-FGKRDIEDGLKKL 418 (479)
Q Consensus 358 ~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~rv~---~~~Gvg~~~--------------~~-~~~~~i~~~i~~v 418 (479)
.|+-.|..|. |+...|+|+++. ....=|..||+++. . .|+.-.+ .. .|++.|.+.+.+
T Consensus 239 al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~- 315 (347)
T PRK14089 239 AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE- 315 (347)
T ss_pred HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-
Confidence 9999999999 999999999882 23457899999998 6 5665433 12 889999999988
Q ss_pred hcCHHHHHHHHHHHHHHc
Q 011687 419 KEDSEMKHRLMNLYMRTM 436 (479)
Q Consensus 419 l~~~~~~~~a~~l~~~~~ 436 (479)
.+.+.+++...++.+.+.
T Consensus 316 ~~~~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 316 MDREKFFKKSKELREYLK 333 (347)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334556666666666653
No 92
>PLN00142 sucrose synthase
Probab=98.57 E-value=4.3e-05 Score=81.22 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=59.3
Q ss_pred CCceEEee----eehHHhhc----ccCccceEec---cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee
Q 011687 336 RQGKVVPW----APQLKVLQ----HNAVGFYLTH---CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV 403 (479)
Q Consensus 336 ~nv~~~~~----~pq~~lL~----~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~ 403 (479)
++|.+.+. .+..++.. ..++ ||.- -|. .++.||+++|+|+|+.... .....+++ -.-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~d-G~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVD-GVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEEe
Confidence 56665442 33344443 2345 7753 344 5899999999999987554 56677777 3678888
Q ss_pred CCCCHHHHHHHHHHH----hcCHHHHHHHHHH
Q 011687 404 NGFGKRDIEDGLKKL----KEDSEMKHRLMNL 431 (479)
Q Consensus 404 ~~~~~~~i~~~i~~v----l~~~~~~~~a~~l 431 (479)
+.-++++++++|.++ ++|++.+++..+-
T Consensus 715 ~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~ 746 (815)
T PLN00142 715 DPYHGDEAANKIADFFEKCKEDPSYWNKISDA 746 (815)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 878888888888654 4677766554443
No 93
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=7.4e-06 Score=78.49 Aligned_cols=142 Identities=21% Similarity=0.248 Sum_probs=90.7
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHH----HhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEE---eeeehHH
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTL----EAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVV---PWAPQLK 348 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al----~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~---~~~pq~~ 348 (479)
.++..|.+++=. --+.. +-+..+.+++ ++. ++.++.-+... ..+.+-....+...+|++++ +|.+...
T Consensus 202 ~~~~~iLvT~HR-reN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v~e~~~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 202 KDKKYILVTAHR-RENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--PRVRELVLKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred ccCcEEEEEcch-hhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhhhHHHHHHhCCCCcEEEeCCcchHHHHH
Confidence 345588888744 33333 4444455544 444 34444444322 11111111233323568887 5667788
Q ss_pred hhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHH
Q 011687 349 VLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRL 428 (479)
Q Consensus 349 lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a 428 (479)
++.++.+ ++|-.| |-.-||...|+|++++-...|+|. +++ .|.-+.+ ..+.+.|.+++.++++++++.+|+
T Consensus 278 L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~--agt~~lv-g~~~~~i~~~~~~ll~~~~~~~~m 348 (383)
T COG0381 278 LMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVE--AGTNILV-GTDEENILDAATELLEDEEFYERM 348 (383)
T ss_pred HHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---cee--cCceEEe-CccHHHHHHHHHHHhhChHHHHHH
Confidence 9999887 888776 456899999999999999999998 222 2443333 577899999999999998888765
Q ss_pred HHH
Q 011687 429 MNL 431 (479)
Q Consensus 429 ~~l 431 (479)
+..
T Consensus 349 ~~~ 351 (383)
T COG0381 349 SNA 351 (383)
T ss_pred hcc
Confidence 443
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.52 E-value=4.5e-05 Score=75.80 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCceEEeee--ehH---HhhcccCccceEecc---c-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCC
Q 011687 336 RQGKVVPWA--PQL---KVLQHNAVGFYLTHC---G-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGF 406 (479)
Q Consensus 336 ~nv~~~~~~--pq~---~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~ 406 (479)
+++.+..+. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+.... ..+..+.+ -..|..++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC--
Confidence 677777776 432 46778887 77543 2 45999999999999987654 33445666 46677664
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011687 407 GKRDIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 407 ~~~~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
+.+.++.+|.+++++++.+++..+-+
T Consensus 323 ~~~~~a~~i~~ll~~~~~~~~~~~~a 348 (372)
T cd03792 323 TVEEAAVRILYLLRDPELRRKMGANA 348 (372)
T ss_pred CcHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 46778889999998877665544433
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.49 E-value=0.00023 Score=75.47 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=85.7
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHH----hCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhcccC
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLE----ALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQHNA 354 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~----~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~ 354 (479)
..+++..|. .. +.+-...+++|+. +.+.--++.+|.+.....-+.+.++....++|.+.+|.+. ..++..++
T Consensus 517 ~~vIg~VGR-L~--~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaD 593 (694)
T PRK15179 517 RFTVGTVMR-VD--DNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFN 593 (694)
T ss_pred CeEEEEEEe-CC--ccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcC
Confidence 356667777 32 2222334444443 3333345666644211000122222222378888888775 45788888
Q ss_pred ccceEe---ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC--CCHHHHHHHHHHHh----cCHHH
Q 011687 355 VGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG--FGKRDIEDGLKKLK----EDSEM 424 (479)
Q Consensus 355 ~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~--~~~~~i~~~i~~vl----~~~~~ 424 (479)
+ ||. +.| .+++.||+++|+|+|+.... .....+++ -..|..++. .+++++.+++.+++ +++.+
T Consensus 594 v--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~d-g~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l 666 (694)
T PRK15179 594 A--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQE-GVTGLTLPADTVTAPDVAEALARIHDMCAADPGI 666 (694)
T ss_pred E--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccC-CCCEEEeCCCCCChHHHHHHHHHHHhChhccHHH
Confidence 8 664 445 58999999999999998764 45666777 356887764 55566666665554 56777
Q ss_pred HHHHHHHH
Q 011687 425 KHRLMNLY 432 (479)
Q Consensus 425 ~~~a~~l~ 432 (479)
++++++..
T Consensus 667 ~~~ar~~a 674 (694)
T PRK15179 667 ARKAADWA 674 (694)
T ss_pred HHHHHHHH
Confidence 77766554
No 96
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.46 E-value=0.00012 Score=75.11 Aligned_cols=129 Identities=12% Similarity=0.189 Sum_probs=74.5
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHh---CCCCeEEEEcCCcCCCCChh---hHhhhcCCCCceEE-eeeeh--HHh
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEA---LGLPFIWVLGFAWREGLPDG---YLDRVSNSRQGKVV-PWAPQ--LKV 349 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~---~~~~~iw~~~~~~~~~l~~~---~~~~~~~~~nv~~~-~~~pq--~~l 349 (479)
+.++++..|. .. +.+-+..+++|+.+ .+.+++++ |.+.. ...+. +.++.+ .++.+. .+-.. ..+
T Consensus 281 ~~~~i~~vGR-l~--~~KG~~~li~a~~~l~~~~~~lviv-G~g~~-~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSR-LT--EQKGLDLVLEALPELLEQGGQLVLL-GTGDP-ELEEAFRALAARYP--GKVGVQIGYDEALAHRI 353 (466)
T ss_pred CCcEEEEeec-cc--cccChHHHHHHHHHHHhcCCEEEEE-ecCcH-HHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHH
Confidence 4467778788 33 22333444444443 35555444 43211 01111 222233 555443 55222 246
Q ss_pred hcccCccceEec---cch-hHHHHHHHhCcceecccCccchhhHHHHHHHH-----hcceeeeCCCCHHHHHHHHHHHhc
Q 011687 350 LQHNAVGFYLTH---CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM-----WKIGIRVNGFGKRDIEDGLKKLKE 420 (479)
Q Consensus 350 L~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~-----~Gvg~~~~~~~~~~i~~~i~~vl~ 420 (479)
++.+|+ ||.- -|. .+.+||+++|+|.|+....+ ....+.++ -+.|..++.-+++++++++.++++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 788888 7753 243 48899999999999875542 22233330 278888888899999999999875
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.45 E-value=7.9e-05 Score=74.79 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCceEEeeeeh-HHhhcccCccceE--ec--cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYL--TH--CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKR 409 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~ 409 (479)
++|.+.+++++ ..+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+. .|.|..+. .+++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~-~~~~ 350 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA-ADPA 350 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC-CCHH
Confidence 68888899986 447888888 65 32 354 46999999999999988643321 123 46777776 7899
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 011687 410 DIEDGLKKLKEDSEMKHRLM 429 (479)
Q Consensus 410 ~i~~~i~~vl~~~~~~~~a~ 429 (479)
+++++|.++++|++.+++..
T Consensus 351 ~la~ai~~ll~~~~~~~~~~ 370 (397)
T TIGR03087 351 DFAAAILALLANPAEREELG 370 (397)
T ss_pred HHHHHHHHHHcCHHHHHHHH
Confidence 99999999998877554433
No 98
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=0.00055 Score=66.44 Aligned_cols=323 Identities=16% Similarity=0.152 Sum_probs=178.7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEc-CCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSR--GFEPIVIT-PEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~-~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
.+.+=.-+-|-+....+|.++|.++ +..|++-| ++.-.+.+.+.-. ..+....+|-+++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D~~---------------- 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLDLP---------------- 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcCch----------------
Confidence 3444445779999999999999999 77776666 3222233322011 2255555663222
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCccc
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQHLE 167 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 167 (479)
....+.++.+ +||++|.-... +..+.-+++.|||.+.+..= ++ .
T Consensus 113 ---~~v~rFl~~~----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------------LS--------~ 158 (419)
T COG1519 113 ---IAVRRFLRKW----RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------------LS--------D 158 (419)
T ss_pred ---HHHHHHHHhc----CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------------ec--------h
Confidence 2244566677 99998855433 66778888999999996210 00 0
Q ss_pred cccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCC-CceeE
Q 011687 168 STARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCR-PKVLL 246 (479)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~-~~v~~ 246 (479)
.++++ + ...+.+.+.+- .+.+.++..+. .+..+.. .++ +++.-
T Consensus 159 ---rS~~~------------------y-~k~~~~~~~~~--~~i~li~aQse--~D~~Rf~----------~LGa~~v~v 202 (419)
T COG1519 159 ---RSFAR------------------Y-AKLKFLARLLF--KNIDLILAQSE--EDAQRFR----------SLGAKPVVV 202 (419)
T ss_pred ---hhhHH------------------H-HHHHHHHHHHH--HhcceeeecCH--HHHHHHH----------hcCCcceEE
Confidence 00000 0 01122222222 45567776663 3333322 122 34666
Q ss_pred eccccccccccCCCCCcccchh---hhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCC--CCeEEEEcCCc-
Q 011687 247 VGPLSKHATIAKNPSLWEEDKS---CIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALG--LPFIWVLGFAW- 320 (479)
Q Consensus 247 vGpl~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~--~~~iw~~~~~~- 320 (479)
.|-+=.+-. .....+.. +...++. .+ .+.|.-+| -...++.+-....++.+.. ...||+=.-..
T Consensus 203 ~GNlKfd~~-----~~~~~~~~~~~~r~~l~~--~r-~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHpER 272 (419)
T COG1519 203 TGNLKFDIE-----PPPQLAAELAALRRQLGG--HR-PVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHPER 272 (419)
T ss_pred ecceeecCC-----CChhhHHHHHHHHHhcCC--CC-ceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCChhh
Confidence 676543321 11111112 2223332 13 45555555 2233444555555555432 33344322110
Q ss_pred ---------CCCCChhhHhh--hcC-CCCceEEeeeehHH-hhcccCc----cceEeccchhHHHHHHHhCcceecccCc
Q 011687 321 ---------REGLPDGYLDR--VSN-SRQGKVVPWAPQLK-VLQHNAV----GFYLTHCGWNSTMEAIQSGKRLLCYPVA 383 (479)
Q Consensus 321 ---------~~~l~~~~~~~--~~~-~~nv~~~~~~pq~~-lL~~~~~----~~~I~HgG~~s~~eal~~GvP~l~~P~~ 383 (479)
..++......+ .+- +.+|.+.|-+--+- ++.-+++ +-|+-+||.| .+|++++|+|+|.=|+.
T Consensus 273 f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~ 351 (419)
T COG1519 273 FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYT 351 (419)
T ss_pred HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcc
Confidence 00000000000 000 14777777766544 3444444 3356689987 68999999999999999
Q ss_pred cchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcc
Q 011687 384 GDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMG 437 (479)
Q Consensus 384 ~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~ 437 (479)
..|.+.++++.+ .|.|+.+++ .+.+.+++..+++|++.+++..+=...+-+
T Consensus 352 ~Nf~ei~~~l~~-~ga~~~v~~--~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 352 FNFSDIAERLLQ-AGAGLQVED--ADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred ccHHHHHHHHHh-cCCeEEECC--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999 899999977 888999999998877766665444444444
No 99
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.37 E-value=0.0004 Score=70.03 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=74.9
Q ss_pred EEEEeCCccccCCHHHHHHHHHHHHhC----CCCeEEEEcCCcCCCCChhhHhhhcC-CCCceE-EeeeehHHhhcccCc
Q 011687 282 IYISFGSWVSPIGEEKVKTLALTLEAL----GLPFIWVLGFAWREGLPDGYLDRVSN-SRQGKV-VPWAPQLKVLQHNAV 355 (479)
Q Consensus 282 Vyvs~Gs~~~~~~~~~~~~l~~al~~~----~~~~iw~~~~~~~~~l~~~~~~~~~~-~~nv~~-~~~~pq~~lL~~~~~ 355 (479)
+.+..|. .. .++-+..+++|+..+ +.--+.++|.+... +.+.+.++. +-++.+ .++.+..+++...|+
T Consensus 230 ~~l~vGR-L~--~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~---~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~Dv 303 (462)
T PLN02846 230 GAYYIGK-MV--WSKGYKELLKLLHKHQKELSGLEVDLYGSGEDS---DEVKAAAEKLELDVRVYPGRDHADPLFHDYKV 303 (462)
T ss_pred EEEEEec-Cc--ccCCHHHHHHHHHHHHhhCCCeEEEEECCCccH---HHHHHHHHhcCCcEEEECCCCCHHHHHHhCCE
Confidence 4556677 32 244455566665542 22225556654321 223322220 012223 365666678988888
Q ss_pred cceEecc----chhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCH
Q 011687 356 GFYLTHC----GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDS 422 (479)
Q Consensus 356 ~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~ 422 (479)
||.-+ --.++.||+++|+|+|+.-... + ..+.+ -+-|... .+.+++++++.++|+++
T Consensus 304 --Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~--~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 304 --FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY--DDGKGFVRATLKALAEE 364 (462)
T ss_pred --EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec--CCHHHHHHHHHHHHccC
Confidence 98874 4688999999999999987653 2 33444 3555444 46889999999999653
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.37 E-value=2.7e-06 Score=69.42 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=76.8
Q ss_pred cEEEEEeCCccccCCHHHH-----HHHHHHHHhCCCC-eEEEEcCCcCCCCChhhHhhhcCCCCceE--Eeeeeh-HHhh
Q 011687 280 SVIYISFGSWVSPIGEEKV-----KTLALTLEALGLP-FIWVLGFAWREGLPDGYLDRVSNSRQGKV--VPWAPQ-LKVL 350 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~-----~~l~~al~~~~~~-~iw~~~~~~~~~l~~~~~~~~~~~~nv~~--~~~~pq-~~lL 350 (479)
..+||+.|| ... ++.+ ....+.+.+.|+. .+..+|.+.. ..++....... ++.+.+ .+|-|- .+..
T Consensus 4 ~~vFVTVGt-T~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-~~~d~~~~~~k-~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGT-TSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-FFGDPIDLIRK-NGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEecc-ccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-CCCCHHHhhcc-cCCeEEEEEecCccHHHHH
Confidence 489999999 442 1221 3356667777764 6667775421 11221110000 022333 377776 6677
Q ss_pred cccCccceEeccchhHHHHHHHhCcceecccC----ccchhhHHHHHHHHhcceeee
Q 011687 351 QHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPV----AGDQFINCAYIVKMWKIGIRV 403 (479)
Q Consensus 351 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~nA~rv~~~~Gvg~~~ 403 (479)
+.+++ +|+|+|.||++|.|..|+|.|+++. ...|-.-|..+++ .|.=..-
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C 132 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYC 132 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEe
Confidence 77888 9999999999999999999999995 4589999999988 5654443
No 101
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=0.00011 Score=75.18 Aligned_cols=330 Identities=12% Similarity=0.110 Sum_probs=164.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
.||.++..-..|++.- -.|.++|+++.=++.+.+-.. +..++ .|++...-.+.+ .--++.+.+..+..
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG--~~M~a-----aG~e~l~d~~eL---sVmG~~EVL~~l~~- 294 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGG--PQMRA-----EGFHPLFNMEEF---QVSGFWEVLLALFK- 294 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEcc--HHHHh-----CcCcccCChHHh---hhhhHHHHHHHHHH-
Confidence 4777777767787665 456777887766666665444 44444 455421000000 01123333333333
Q ss_pred chHHHHHHHHHhhccCCceEEE-eCCCc--ccHHHHHHHhCC--CcEeEcchhHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 011687 91 MPIHLERLINKINEDGRVACVV-VDLLA--SSAIGVACRCGV--PAAGFWPAMLATYCLIDAIPEMIKSGYISDTGSPQH 165 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi-~D~~~--~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~ 165 (479)
....++++.+.+..+ +||++| .|.=. .-..-.+++.|+ |++.+.+.
T Consensus 295 l~~~~~~l~~~i~~~-kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP---------------------------- 345 (608)
T PRK01021 295 LWYRYRKLYKTILKT-NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP---------------------------- 345 (608)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc----------------------------
Confidence 333344455554443 899998 46522 223455677886 98875211
Q ss_pred cccccccCCCCCCCCCCCCCcccCCCccchhHHHHHHHHHhhhcCCceEEEcCchhhhhhhhhhhhhcccccccCCCcee
Q 011687 166 LESTARFLPNQPMLSTEDLPWLIGTPAARKSRFKFWSRTLERSRNLKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVL 245 (479)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~ 245 (479)
..|.+-+ .+.+...+..+ .-.++.+ +|.+ ++++ .+-++.
T Consensus 346 --qVWAWR~---------------------~Rikki~k~vD----~ll~IfP----FE~~-----~y~~-----~gv~v~ 384 (608)
T PRK01021 346 --SIWAWRP---------------------KRKTILEKYLD----LLLLILP----FEQN-----LFKD-----SPLRTV 384 (608)
T ss_pred --cceeeCc---------------------chHHHHHHHhh----hheecCc----cCHH-----HHHh-----cCCCeE
Confidence 0011100 11221222111 1122222 2222 3333 268899
Q ss_pred Eec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHH--hC--CCCeEEEEcCCc
Q 011687 246 LVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLE--AL--GLPFIWVLGFAW 320 (479)
Q Consensus 246 ~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~--~~--~~~~iw~~~~~~ 320 (479)
||| |+...-. .....++..+-+...+++++|-+--|| =...=...+..+++|.+ .+ +.+++.......
T Consensus 385 yVGHPL~d~i~------~~~~~~~~r~~lgl~~~~~iIaLLPGS-R~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~ 457 (608)
T PRK01021 385 YLGHPLVETIS------SFSPNLSWKEQLHLPSDKPIVAAFPGS-RRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK 457 (608)
T ss_pred EECCcHHhhcc------cCCCHHHHHHHcCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh
Confidence 999 8876421 111222222333333467899999999 33233355666777777 44 334544322211
Q ss_pred CCCCChhhHhhhcCCC--CceEEeeeehHHhhcccCccceEeccchhHHHHHHHhCcceecc-cCccchhhHHHHHHHHh
Q 011687 321 REGLPDGYLDRVSNSR--QGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY-PVAGDQFINCAYIVKMW 397 (479)
Q Consensus 321 ~~~l~~~~~~~~~~~~--nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~rv~~~~ 397 (479)
..+.+.+.....+ ++.++.--...+++..||+ .+.-.| ..++|+...|+|++++ -...=-...|+++.+ .
T Consensus 458 ---~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvk-i 530 (608)
T PRK01021 458 ---YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFK-I 530 (608)
T ss_pred ---hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHh-c
Confidence 0111221111001 1233321012678999888 665555 4678999999999885 332222345555554 2
Q ss_pred ----------cceee----eC----CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcc
Q 011687 398 ----------KIGIR----VN----GFGKRDIEDGLKKLKEDSEMKHRLMNLYMRTMG 437 (479)
Q Consensus 398 ----------Gvg~~----~~----~~~~~~i~~~i~~vl~~~~~~~~a~~l~~~~~~ 437 (479)
=+|.. +- +.|+++|++++ ++|+|++.+++.++--+++++
T Consensus 531 ~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 531 ILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred cCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 11221 11 27899999997 777776544444433333333
No 102
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.36 E-value=0.00074 Score=67.33 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=63.7
Q ss_pred CCceEEeeeehHH---hhcccCccceEec----cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee-CCC
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTH----CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV-NGF 406 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~-~~~ 406 (479)
.++.+.+++|+.+ +++.+|+ +|.. .|. .++.||+++|+|+|+.... .+...+++ -..|..+ +..
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~~~~ 329 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLAEPM 329 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEeCCC
Confidence 6788889998654 5888888 6643 333 6788999999999998764 45666777 4678755 457
Q ss_pred CHHHHHHHHHHHhcCHHHH
Q 011687 407 GKRDIEDGLKKLKEDSEMK 425 (479)
Q Consensus 407 ~~~~i~~~i~~vl~~~~~~ 425 (479)
+.++++++|.++++|++.+
T Consensus 330 d~~~la~~I~~ll~d~~~~ 348 (380)
T PRK15484 330 TSDSIISDINRTLADPELT 348 (380)
T ss_pred CHHHHHHHHHHHHcCHHHH
Confidence 8999999999999888753
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.27 E-value=0.00051 Score=70.65 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=79.2
Q ss_pred CcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChh---hHhhhcCCCCceEEeeeehH---Hhhc
Q 011687 279 NSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDG---YLDRVSNSRQGKVVPWAPQL---KVLQ 351 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~---~~~~~~~~~nv~~~~~~pq~---~lL~ 351 (479)
..++++..|+ .. ....+.+...+..+.+.+.+++ .+|.+. ....+. +.++.+ .++.+....+.. .+++
T Consensus 290 ~~~~i~~vGr-l~~~Kg~~~li~a~~~l~~~~~~lv-i~G~g~-~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 290 DVPLFGVISR-LTQQKGVDLLLAALPELLELGGQLV-VLGTGD-PELEEALRELAERYP--GNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CCCEEEEEec-CccccChHHHHHHHHHHHHcCcEEE-EECCCC-HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHH
Confidence 3466777788 43 2333333333333333344443 334321 011111 122223 566666444543 4778
Q ss_pred ccCccceEec---cch-hHHHHHHHhCcceecccCccchhhHHHHHHHHh------cceeeeCCCCHHHHHHHHHHHhc-
Q 011687 352 HNAVGFYLTH---CGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMW------KIGIRVNGFGKRDIEDGLKKLKE- 420 (479)
Q Consensus 352 ~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~------Gvg~~~~~~~~~~i~~~i~~vl~- 420 (479)
.+|+ ++.- -|. .+.+||+++|+|+|+.... .....+.+ - +.|..++..++++++++|.++++
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~v~~-~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTG----GLADTVVD-GDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCC----CccceEec-CCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 8888 6643 233 4789999999999987654 23333444 3 78888888899999999999986
Q ss_pred ---CHHHHHH
Q 011687 421 ---DSEMKHR 427 (479)
Q Consensus 421 ---~~~~~~~ 427 (479)
+++.+++
T Consensus 438 ~~~~~~~~~~ 447 (473)
T TIGR02095 438 YRQDPSLWEA 447 (473)
T ss_pred HhcCHHHHHH
Confidence 6654443
No 104
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.24 E-value=0.00012 Score=72.17 Aligned_cols=135 Identities=12% Similarity=0.183 Sum_probs=91.4
Q ss_pred EEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehH---HhhcccCccce
Q 011687 282 IYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQL---KVLQHNAVGFY 358 (479)
Q Consensus 282 Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~ 358 (479)
.++..|+ .. ...-...+++|+++++.++++ +|.+.. .+.+.+... +||.+.+++|+. .++..+++ +
T Consensus 197 ~il~~G~-~~--~~K~~~~li~a~~~~~~~l~i-vG~g~~---~~~l~~~~~--~~V~~~g~~~~~~~~~~~~~ad~--~ 265 (351)
T cd03804 197 YYLSVGR-LV--PYKRIDLAIEAFNKLGKRLVV-IGDGPE---LDRLRAKAG--PNVTFLGRVSDEELRDLYARARA--F 265 (351)
T ss_pred EEEEEEc-Cc--cccChHHHHHHHHHCCCcEEE-EECChh---HHHHHhhcC--CCEEEecCCCHHHHHHHHHhCCE--E
Confidence 4556677 33 334567788888888866544 443321 122333344 899999999984 47878888 5
Q ss_pred Ee--ccch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 011687 359 LT--HCGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDS-EMKHRLMNLY 432 (479)
Q Consensus 359 I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~-~~~~~a~~l~ 432 (479)
|. .-|. .++.||+++|+|+|+....+ ....+++ -+.|..++.-+.++++++|.++++++ ..++++++-+
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 53 3333 56789999999999986543 4455666 47888888788999999999999887 4444444433
No 105
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.20 E-value=2e-05 Score=77.07 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=81.4
Q ss_pred CCCcEEEEEeCCccccCC-H---HHHHHHHHHHHhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh---HH
Q 011687 277 KPNSVIYISFGSWVSPIG-E---EKVKTLALTLEAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ---LK 348 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~-~---~~~~~l~~al~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq---~~ 348 (479)
.+++.++|++=. ..+.. + ..+..++.++.+. ++++||.+..... ....+.+....-+|+.+++.+++ ..
T Consensus 178 ~~~~~iLvt~H~-~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--~~~~i~~~l~~~~~v~~~~~l~~~~~l~ 254 (346)
T PF02350_consen 178 APKPYILVTLHP-VTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--GSDIIIEKLKKYDNVRLIEPLGYEEYLS 254 (346)
T ss_dssp TTSEEEEEE-S--CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--HHHHHHHHHTT-TTEEEE----HHHHHH
T ss_pred cCCCEEEEEeCc-chhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--HHHHHHHHhcccCCEEEECCCCHHHHHH
Confidence 567799999855 44444 3 3455566666665 6778888873210 01122222221147888877765 55
Q ss_pred hhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHHHHH
Q 011687 349 VLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMKHRL 428 (479)
Q Consensus 349 lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~~~a 428 (479)
+|+++++ +|+..| |-..||.+.|+|.|.+=..++.+.- .. .|..+.+ ..++++|.++++++++++...+++
T Consensus 255 ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~----r~-~~~nvlv-~~~~~~I~~ai~~~l~~~~~~~~~ 325 (346)
T PF02350_consen 255 LLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQEG----RE-RGSNVLV-GTDPEAIIQAIEKALSDKDFYRKL 325 (346)
T ss_dssp HHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HHH----HH-TTSEEEE-TSSHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHHH----Hh-hcceEEe-CCCHHHHHHHHHHHHhChHHHHhh
Confidence 8889888 999999 6666999999999999443333322 22 3555554 489999999999999774544443
Q ss_pred H
Q 011687 429 M 429 (479)
Q Consensus 429 ~ 429 (479)
.
T Consensus 326 ~ 326 (346)
T PF02350_consen 326 K 326 (346)
T ss_dssp H
T ss_pred c
Confidence 3
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.18 E-value=0.001 Score=67.18 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCceEEeeeehHH---hhcccCccceEecc---c-hhHHHHHHHhCcceecccCccchhhHHHHHH---HHhcceeeeCC
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYLTHC---G-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIV---KMWKIGIRVNG 405 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~---~~~Gvg~~~~~ 405 (479)
++|.+.+++|+.+ +|..+++ +|+-. | .-++.||+++|+|+|+.-..+. ....++ + -..|...+
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~-g~~G~l~~- 377 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDG-GPTGFLAS- 377 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCC-CCceEEeC-
Confidence 7899999998765 7777887 66421 2 3578999999999998665431 112233 4 35777663
Q ss_pred CCHHHHHHHHHHHhcCHH
Q 011687 406 FGKRDIEDGLKKLKEDSE 423 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~~~~ 423 (479)
+++++++++.+++++++
T Consensus 378 -d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 378 -TAEEYAEAIEKILSLSE 394 (419)
T ss_pred -CHHHHHHHHHHHHhCCH
Confidence 89999999999997543
No 107
>PLN02316 synthase/transferase
Probab=98.17 E-value=0.0058 Score=67.05 Aligned_cols=132 Identities=8% Similarity=0.071 Sum_probs=75.2
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHh---CCCCeEEEEcCCcCCCCCh---hhHhhhc--CCCCceEEeeeehH---H
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEA---LGLPFIWVLGFAWREGLPD---GYLDRVS--NSRQGKVVPWAPQL---K 348 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~---~~~~~iw~~~~~~~~~l~~---~~~~~~~--~~~nv~~~~~~pq~---~ 348 (479)
.+++...|. .. ..+-+..|+.|+.. .+.+++ ++|.+....+-. .+..++. ..++|.+....+.. .
T Consensus 840 ~plVg~VGR-L~--~qKGvdlLi~Al~~ll~~~~qlV-IvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~ 915 (1036)
T PLN02316 840 LPLVGIITR-LT--HQKGIHLIKHAIWRTLERNGQVV-LLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHL 915 (1036)
T ss_pred CeEEEEEec-cc--cccCHHHHHHHHHHHhhcCcEEE-EEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHH
Confidence 356667777 33 22334445555544 255554 355432111111 1222111 01566665444443 5
Q ss_pred hhcccCccceEecc----chhHHHHHHHhCcceecccCccchhhHHHHHHHH------------hcceeeeCCCCHHHHH
Q 011687 349 VLQHNAVGFYLTHC----GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM------------WKIGIRVNGFGKRDIE 412 (479)
Q Consensus 349 lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~------------~Gvg~~~~~~~~~~i~ 412 (479)
+++.+|+ |+.-. =-.+.+||+++|+|.|+....+ ....|.++ -+-|..++..+++.|.
T Consensus 916 iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa 989 (1036)
T PLN02316 916 IYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVD 989 (1036)
T ss_pred HHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhccccccccccccccccCCceEEeCCCCHHHHH
Confidence 7888888 77432 2468999999999888865542 22222220 1568888888999999
Q ss_pred HHHHHHhcC
Q 011687 413 DGLKKLKED 421 (479)
Q Consensus 413 ~~i~~vl~~ 421 (479)
.+|.+++++
T Consensus 990 ~AL~raL~~ 998 (1036)
T PLN02316 990 YALNRAISA 998 (1036)
T ss_pred HHHHHHHhh
Confidence 999999854
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.13 E-value=0.0017 Score=66.88 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCceEEeeeehH---HhhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHH-----hcceeee
Q 011687 336 RQGKVVPWAPQL---KVLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM-----WKIGIRV 403 (479)
Q Consensus 336 ~nv~~~~~~pq~---~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~-----~Gvg~~~ 403 (479)
+|+.+..-.++. .+++.+++ ++.- +-..+.+||+++|+|+|+....+ ....+.++ -|.|..+
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~ 424 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVF 424 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEe
Confidence 677665333332 36777887 6643 12247899999999999876542 22233330 3589999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 011687 404 NGFGKRDIEDGLKKLKE 420 (479)
Q Consensus 404 ~~~~~~~i~~~i~~vl~ 420 (479)
+..+++++++++.++++
T Consensus 425 ~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 425 EGYNADALLAALRRALA 441 (476)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88889999999999884
No 109
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.13 E-value=0.0099 Score=59.70 Aligned_cols=173 Identities=11% Similarity=0.129 Sum_probs=101.5
Q ss_pred hhhhcCCCCCcEEEEEeCCccccC------C-H---HHHHHHHHHHHhCCCCeEEEEcCCc------CCC-CChhhHhhh
Q 011687 270 IDWLDNQKPNSVIYISFGSWVSPI------G-E---EKVKTLALTLEALGLPFIWVLGFAW------REG-LPDGYLDRV 332 (479)
Q Consensus 270 ~~~l~~~~~~~~Vyvs~Gs~~~~~------~-~---~~~~~l~~al~~~~~~~iw~~~~~~------~~~-l~~~~~~~~ 332 (479)
..|+....++++|-|+... .... . . +.+..+++.+.+.++++++.-.... .+. .-..+.+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~-~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRE-LAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhcccccCCEEEEEecc-cccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 3455433455688888766 3211 1 2 2333445555555888776643210 000 011222333
Q ss_pred cCCCCceEE--eeeeh--HHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee---CC
Q 011687 333 SNSRQGKVV--PWAPQ--LKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV---NG 405 (479)
Q Consensus 333 ~~~~nv~~~--~~~pq--~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~---~~ 405 (479)
+...++.++ ++-|. ..++++|++ +|.. -.=+..-|+..|||.+.++.. +.....+.+ +|....+ +.
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~-lg~~~~~~~~~~ 376 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINYE---HKSAGIMQQ-LGLPEMAIDIRH 376 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeeeh---HHHHHHHHH-cCCccEEechhh
Confidence 311344443 23343 368889887 7764 344566788999999999983 455555677 8888653 33
Q ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 406 FGKRDIEDGLKKLKED-SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~~-~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
++.++|.+.+.+++++ +.++++.++-.++++.. ..+...++++.+
T Consensus 377 l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~ 422 (426)
T PRK10017 377 LLDGSLQAMVADTLGQLPALNARLAEAVSRERQT------GMQMVQSVLERI 422 (426)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHh
Confidence 8899999999999976 55777766666666653 335555555543
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.12 E-value=4.4e-05 Score=66.74 Aligned_cols=146 Identities=14% Similarity=0.143 Sum_probs=91.8
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHh-----CCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh---HH
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEA-----LGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ---LK 348 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~-----~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq---~~ 348 (479)
.+++.+++..|+ ... ..-...+++++.. .+.-.++++|.......-....+......++.+.+++++ ..
T Consensus 12 ~~~~~~il~~g~-~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (172)
T PF00534_consen 12 PDKKKIILFIGR-LDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDE 88 (172)
T ss_dssp -TTSEEEEEESE-SSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHH
T ss_pred CCCCeEEEEEec-Ccc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccc
Confidence 456678888888 332 2333444444433 233345555522100000111111111278889999983 44
Q ss_pred hhcccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHH
Q 011687 349 VLQHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEM 424 (479)
Q Consensus 349 lL~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~ 424 (479)
++..+++ +|+. |...++.||+++|+|+|+.. ...+...+.+ .+.|..++..+.++++++|.+++++++.
T Consensus 89 ~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~~~~~~l~~~i~~~l~~~~~ 161 (172)
T PF00534_consen 89 LYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDPNDIEELADAIEKLLNDPEL 161 (172)
T ss_dssp HHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEESTTSHHHHHHHHHHHHHHHHH
T ss_pred cccccee--ccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCCCCHHHHHHHHHHHHCCHHH
Confidence 7888888 8776 66789999999999999755 4467777778 5779999888999999999999988876
Q ss_pred HHHHHHHH
Q 011687 425 KHRLMNLY 432 (479)
Q Consensus 425 ~~~a~~l~ 432 (479)
++++.+-+
T Consensus 162 ~~~l~~~~ 169 (172)
T PF00534_consen 162 RQKLGKNA 169 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555443
No 111
>PLN02949 transferase, transferring glycosyl groups
Probab=98.04 E-value=0.0079 Score=61.36 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=54.9
Q ss_pred CCCceEEeeeehHH---hhcccCccceEe---ccch-hHHHHHHHhCcceecccCccchhhHHHHHHHH-hc-ceeeeCC
Q 011687 335 SRQGKVVPWAPQLK---VLQHNAVGFYLT---HCGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM-WK-IGIRVNG 405 (479)
Q Consensus 335 ~~nv~~~~~~pq~~---lL~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~-~G-vg~~~~~ 405 (479)
+++|.+.+++|+.+ +|..+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 37899999998765 6777777 663 2333 3799999999999998764310 0111110 12 24333
Q ss_pred CCHHHHHHHHHHHhc-CHHHH
Q 011687 406 FGKRDIEDGLKKLKE-DSEMK 425 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~-~~~~~ 425 (479)
-+.++++++|.++++ +++.+
T Consensus 407 ~~~~~la~ai~~ll~~~~~~r 427 (463)
T PLN02949 407 TTVEEYADAILEVLRMRETER 427 (463)
T ss_pred CCHHHHHHHHHHHHhCCHHHH
Confidence 378999999999997 44433
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.99 E-value=0.0059 Score=62.83 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=87.2
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHh---C-CCCeEEEEcCCcCCC-CCh---hhHhhhcCCCCceEEeeeehHHhh
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEA---L-GLPFIWVLGFAWREG-LPD---GYLDRVSNSRQGKVVPWAPQLKVL 350 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~---~-~~~~iw~~~~~~~~~-l~~---~~~~~~~~~~nv~~~~~~pq~~lL 350 (479)
.+.+++..|+ .. +.+-++.+++|+.. . +.--++.+|++.... .-+ .+.++....+||.+.+...-.+++
T Consensus 292 ~~~~i~~vGr-l~--~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l 368 (475)
T cd03813 292 EPPVVGLIGR-VV--PIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYL 368 (475)
T ss_pred CCcEEEEEec-cc--cccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHH
Confidence 3466777788 43 22333444444432 2 222345666442110 001 111222223788888855667788
Q ss_pred cccCccceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHh------cceeeeCCCCHHHHHHHHHHHhc
Q 011687 351 QHNAVGFYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMW------KIGIRVNGFGKRDIEDGLKKLKE 420 (479)
Q Consensus 351 ~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~------Gvg~~~~~~~~~~i~~~i~~vl~ 420 (479)
+.+++ +|.- |-..++.||+++|+|+|+... ......+++ . ..|..++..+.+++++++.++++
T Consensus 369 ~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~-~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 369 PKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEG-ADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred HhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcC-CcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 88888 6543 335789999999999999544 344455555 3 27888877899999999999999
Q ss_pred CHHHHHHHHHH
Q 011687 421 DSEMKHRLMNL 431 (479)
Q Consensus 421 ~~~~~~~a~~l 431 (479)
|++.++++.+-
T Consensus 442 ~~~~~~~~~~~ 452 (475)
T cd03813 442 DPELRRAMGEA 452 (475)
T ss_pred CHHHHHHHHHH
Confidence 88765554433
No 113
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.95 E-value=0.011 Score=58.74 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=52.6
Q ss_pred CCceEEeeeehHH---hhcccCccceE------eccch-hHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC
Q 011687 336 RQGKVVPWAPQLK---VLQHNAVGFYL------THCGW-NSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG 405 (479)
Q Consensus 336 ~nv~~~~~~pq~~---lL~~~~~~~~I------~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~ 405 (479)
+||.+.+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEeC
Confidence 7999999999766 57778883222 12332 468999999999998763 223344 33 333333
Q ss_pred CCHHHHHHHHHHHhcC
Q 011687 406 FGKRDIEDGLKKLKED 421 (479)
Q Consensus 406 ~~~~~i~~~i~~vl~~ 421 (479)
-+.+++.++|++++.+
T Consensus 325 ~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 DDPEEFVAAIEKALLE 340 (373)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5899999999997743
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00025 Score=57.00 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=70.1
Q ss_pred EEEEeCCccccCCHHHH--HHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCC-CceEEeeeeh-HHhhcccCccc
Q 011687 282 IYISFGSWVSPIGEEKV--KTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSR-QGKVVPWAPQ-LKVLQHNAVGF 357 (479)
Q Consensus 282 Vyvs~Gs~~~~~~~~~~--~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~-nv~~~~~~pq-~~lL~~~~~~~ 357 (479)
+||+.|| ....=...+ .+...-.+....++|..+|.+. ..|-+ + .++-.++-+- +.+...+++
T Consensus 2 ifVTvGs-tf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--~kpva--------gl~v~~F~~~~kiQsli~darI-- 68 (161)
T COG5017 2 IFVTVGS-TFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--IKPVA--------GLRVYGFDKEEKIQSLIHDARI-- 68 (161)
T ss_pred eEEEecC-ccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--ccccc--------ccEEEeechHHHHHHHhhcceE--
Confidence 7899999 421001111 1122222333567888998643 22311 2 3333344443 446666666
Q ss_pred eEeccchhHHHHHHHhCcceecccCcc--------chhhHHHHHHHHhcceeeeCC
Q 011687 358 YLTHCGWNSTMEAIQSGKRLLCYPVAG--------DQFINCAYIVKMWKIGIRVNG 405 (479)
Q Consensus 358 ~I~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~nA~rv~~~~Gvg~~~~~ 405 (479)
+|+|+|.||++.++..++|.|++|-.. .|-..|..+.+ .+.-.....
T Consensus 69 VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 69 VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 999999999999999999999999754 58888888888 777666643
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.87 E-value=0.00041 Score=69.37 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=92.3
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcC----CCCceEEeeeehHHhh--
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSN----SRQGKVVPWAPQLKVL-- 350 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~----~~nv~~~~~~pq~~lL-- 350 (479)
++..++|.||.+ .....++.++.-.+.+++.+.-.+|........ .+.+.+.... .+++.+.++.|+.+-|
T Consensus 282 p~d~vvF~~fn~-~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 282 PEDAVVFGSFNN-LFKISPETLDLWARILKAVPNSRLWLLRFPASG--EARLRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp -SSSEEEEE-S--GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHHHHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCCceEEEecCc-cccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 355699999999 889999999999999999999899988643210 0111111100 1567777877765543
Q ss_pred -cccCccceE---eccchhHHHHHHHhCcceecccCcc-chhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHH
Q 011687 351 -QHNAVGFYL---THCGWNSTMEAIQSGKRLLCYPVAG-DQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMK 425 (479)
Q Consensus 351 -~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~-DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~ 425 (479)
...|+ ++ ..+|.+|++|||+.|||+|.+|-.. =...-|..+.. +|+...+-.-..+-+..++ ++-+|++++
T Consensus 359 ~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~s~~eYv~~Av-~La~D~~~l 434 (468)
T PF13844_consen 359 YQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIADSEEEYVEIAV-RLATDPERL 434 (468)
T ss_dssp GGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-SSHHHHHHHHH-HHHH-HHHH
T ss_pred hhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCCCHHHHHHHHH-HHhCCHHHH
Confidence 44555 43 4578899999999999999999543 23344445666 8888665443344445555 555566655
Q ss_pred HHHH-HHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 426 HRLM-NLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 426 ~~a~-~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
++.+ ++.+++.++ +--....+++.+|...
T Consensus 435 ~~lR~~Lr~~~~~S------pLfd~~~~ar~lE~a~ 464 (468)
T PF13844_consen 435 RALRAKLRDRRSKS------PLFDPKRFARNLEAAY 464 (468)
T ss_dssp HHHHHHHHHHHHHS------GGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC------CCCCHHHHHHHHHHHH
Confidence 4443 343444332 2234455666666543
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.83 E-value=0.021 Score=57.44 Aligned_cols=115 Identities=11% Similarity=-0.030 Sum_probs=71.2
Q ss_pred EEEEeCCccccCCHHHHHHHHHHHHhCCCCe-EEEEcCCcCCCCChhhHhhhcCCCCceEEeeee-h---HHhhcccCcc
Q 011687 282 IYISFGSWVSPIGEEKVKTLALTLEALGLPF-IWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP-Q---LKVLQHNAVG 356 (479)
Q Consensus 282 Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~-iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~p-q---~~lL~~~~~~ 356 (479)
+++..|. .......-+..+++|+..++..+ ++.+|.+... . . .++...++.. + ..+++.+|+
T Consensus 243 ~il~v~~-~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~-~--------~--~~v~~~g~~~~~~~l~~~y~~aDv- 309 (405)
T PRK10125 243 KIAVVAH-DLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF-T--------A--GNVVNHGFETDKRKLMSALNQMDA- 309 (405)
T ss_pred EEEEEEe-ccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc-c--------c--cceEEecCcCCHHHHHHHHHhCCE-
Confidence 4444554 23223344577888998876554 4455532111 1 1 4555556553 3 345666777
Q ss_pred ceEec----cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHH
Q 011687 357 FYLTH----CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLK 416 (479)
Q Consensus 357 ~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~ 416 (479)
||.- |-..++.||+++|+|+|+....+ ..+.+.+ +-|..++.-+.++|++.++
T Consensus 310 -fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~~d~~~La~~~~ 366 (405)
T PRK10125 310 -LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSEEEVLQLAQLSK 366 (405)
T ss_pred -EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECCCCHHHHHhccC
Confidence 7764 33578999999999999998874 3333434 5788888778888887543
No 117
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.0026 Score=61.17 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=104.9
Q ss_pred CCceeEec-cccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEE
Q 011687 241 RPKVLLVG-PLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIW 314 (479)
Q Consensus 241 ~~~v~~vG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw 314 (479)
+-+..||| |+..... ..+..+...+-+....+++++.+--|| =.+.-......+.+|++.+ +.+|+.
T Consensus 155 g~~~~yVGHpl~d~i~------~~~~r~~ar~~l~~~~~~~~lalLPGS-R~sEI~rl~~~f~~a~~~l~~~~~~~~~vl 227 (381)
T COG0763 155 GLPCTYVGHPLADEIP------LLPDREAAREKLGIDADEKTLALLPGS-RRSEIRRLLPPFVQAAQELKARYPDLKFVL 227 (381)
T ss_pred CCCeEEeCChhhhhcc------ccccHHHHHHHhCCCCCCCeEEEecCC-cHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 44589999 6665431 122222333344444677799999999 3222223344455555543 345655
Q ss_pred EEcCCcCCCCChhhHhhhcCCCCc-eEEeeee---hHHhhcccCccceEeccchhHHHHHHHhCcceeccc-CccchhhH
Q 011687 315 VLGFAWREGLPDGYLDRVSNSRQG-KVVPWAP---QLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYP-VAGDQFIN 389 (479)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~nv-~~~~~~p---q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P-~~~DQ~~n 389 (479)
-+.......+.....+ .+. ...-++. -.+.+..+|+ .+.-+| ..++|+..+|+|+++.= ...=-...
T Consensus 228 p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~i 299 (381)
T COG0763 228 PLVNAKYRRIIEEALK-----WEVAGLSLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFI 299 (381)
T ss_pred ecCcHHHHHHHHHHhh-----ccccCceEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 4433211111111111 111 1111222 1336777776 444444 45789999999998762 11112345
Q ss_pred HHHHHHHhcceeee-------------C-CCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHcccccCCCchhHHHHH
Q 011687 390 CAYIVKMWKIGIRV-------------N-GFGKRDIEDGLKKLKEDS----EMKHRLMNLYMRTMGDDGARARVMNNLTG 451 (479)
Q Consensus 390 A~rv~~~~Gvg~~~-------------~-~~~~~~i~~~i~~vl~~~----~~~~~a~~l~~~~~~~~~~g~~~~~~~~~ 451 (479)
|.++.+ ....--. . .++++.|++++..++.|+ .+++...++...++. +.+++.+.+.
T Consensus 300 ak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~ 374 (381)
T COG0763 300 AKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQA 374 (381)
T ss_pred HHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHH
Confidence 555555 3322111 1 188999999999999777 466666666666665 3456666666
Q ss_pred HHHHH
Q 011687 452 FVDDL 456 (479)
Q Consensus 452 ~~~~~ 456 (479)
+.+.+
T Consensus 375 vl~~~ 379 (381)
T COG0763 375 VLELL 379 (381)
T ss_pred HHHHh
Confidence 55543
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.67 E-value=0.014 Score=59.79 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCceEEeeeeh-HHhhcccCccceEec---cc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYLTH---CG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
++|.+.+|... ..+|+.+++ ||.. -| .+++.||+++|+|+|+.... .+...+.+ -..|..++.-+.+.
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~d-G~nG~LVp~~D~~a 527 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIE-GVSGFILDDAQTVN 527 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHccc-CCcEEEECCCChhh
Confidence 78888887654 447888888 8753 44 57999999999999987764 56677777 47888887655555
Q ss_pred HHHHH
Q 011687 411 IEDGL 415 (479)
Q Consensus 411 i~~~i 415 (479)
+.+++
T Consensus 528 La~ai 532 (578)
T PRK15490 528 LDQAC 532 (578)
T ss_pred HHHHH
Confidence 55554
No 119
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.67 E-value=0.031 Score=58.43 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhC----CCCeEEEEcCCcCCCCChhhHhhhcC-CCCceEEeeeehH-HhhcccCccceEecc----c
Q 011687 294 GEEKVKTLALTLEAL----GLPFIWVLGFAWREGLPDGYLDRVSN-SRQGKVVPWAPQL-KVLQHNAVGFYLTHC----G 363 (479)
Q Consensus 294 ~~~~~~~l~~al~~~----~~~~iw~~~~~~~~~l~~~~~~~~~~-~~nv~~~~~~pq~-~lL~~~~~~~~I~Hg----G 363 (479)
..+-+..+++|+..+ +.--+.++|.+.. -+.+...+.. +-++.+.++.+.. ++++.+++ ||.-. =
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~---reeLe~la~eLgL~V~FLG~~dd~~~lyasaDV--FVlPS~sEgF 631 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFNLDVFGNGED---AHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKV--FINPSISDVL 631 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCcc---HHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCE--EEECCCcccc
Confidence 345556666666542 2223445554432 1223222220 1235555666654 48888888 87632 2
Q ss_pred hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHHH
Q 011687 364 WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEMK 425 (479)
Q Consensus 364 ~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~~ 425 (479)
..++.||+++|+|+|+....+... +.+ -+-|... -+.+++++++.++|+++..+
T Consensus 632 GlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGll~--~D~EafAeAI~~LLsd~~~r 685 (794)
T PLN02501 632 CTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCLTY--KTSEDFVAKVKEALANEPQP 685 (794)
T ss_pred hHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeEec--CCHHHHHHHHHHHHhCchhh
Confidence 588999999999999988765321 333 2333322 56899999999999877643
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.63 E-value=0.0014 Score=66.01 Aligned_cols=139 Identities=15% Similarity=0.147 Sum_probs=86.4
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCcCCCCChhhHhh---hcCCCCceEEeeeehHH--
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEAL-----GLPFIWVLGFAWREGLPDGYLDR---VSNSRQGKVVPWAPQLK-- 348 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-----~~~~iw~~~~~~~~~l~~~~~~~---~~~~~nv~~~~~~pq~~-- 348 (479)
++..+++.|. ... ..-+..+++|+.++ +.++.|.+-++.. ..+.+.+. ...+++|.+.+|+++.+
T Consensus 229 ~~~~il~~Gr-l~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~ 303 (407)
T cd04946 229 DTLRIVSCSY-LVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNFTGELSNSEVY 303 (407)
T ss_pred CCEEEEEeec-ccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEEecCCChHHHH
Confidence 3466777787 332 22234445555442 2356665433211 11112111 11126788889999765
Q ss_pred -hhcccCccceEeccc----hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC-CCHHHHHHHHHHHhcCH
Q 011687 349 -VLQHNAVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG-FGKRDIEDGLKKLKEDS 422 (479)
Q Consensus 349 -lL~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~-~~~~~i~~~i~~vl~~~ 422 (479)
++..+++.+||...- ..+++||+++|+|+|+.... .....+.+ -+.|..+.. .+.++++++|.++++|+
T Consensus 304 ~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ll~~~ 378 (407)
T cd04946 304 KLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDN-GGNGLLLSKDPTPNELVSSLSKFIDNE 378 (407)
T ss_pred HHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcC-CCcEEEeCCCCCHHHHHHHHHHHHhCH
Confidence 444444444775543 57899999999999986654 46677777 458888876 68999999999999887
Q ss_pred HHHHH
Q 011687 423 EMKHR 427 (479)
Q Consensus 423 ~~~~~ 427 (479)
+.+++
T Consensus 379 ~~~~~ 383 (407)
T cd04946 379 EEYQT 383 (407)
T ss_pred HHHHH
Confidence 75543
No 121
>PRK14099 glycogen synthase; Provisional
Probab=97.55 E-value=0.082 Score=54.45 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCc-eEEeeeehHH-hh-cccCccceEe---ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHH--------hcce
Q 011687 336 RQG-KVVPWAPQLK-VL-QHNAVGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKM--------WKIG 400 (479)
Q Consensus 336 ~nv-~~~~~~pq~~-lL-~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~--------~Gvg 400 (479)
+++ .+.++-.... ++ +.+|+ |+. +=| ..+.+||+++|+|.|+....+ ....+.++ -+.|
T Consensus 350 ~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GG----l~d~V~~~~~~~~~~~~~~G 423 (485)
T PRK14099 350 GQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGG----LADTVVDANEMAIATGVATG 423 (485)
T ss_pred CCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCC----ccceeecccccccccCCCce
Confidence 454 3446532222 33 34666 775 233 357789999997766654432 22222220 1578
Q ss_pred eeeCCCCHHHHHHHHHH---HhcCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 401 IRVNGFGKRDIEDGLKK---LKEDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 401 ~~~~~~~~~~i~~~i~~---vl~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
..++..+++++++++.+ +++|++.+++..+-+ ... .-|-.+.+++..+.++...
T Consensus 424 ~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~---~~~---~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 424 VQFSPVTADALAAALRKTAALFADPVAWRRLQRNG---MTT---DVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHh---hhh---cCChHHHHHHHHHHHHHHH
Confidence 88888899999999987 566766554444322 111 1334455566666555543
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.46 E-value=0.031 Score=52.09 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc--ccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHH
Q 011687 19 PAQGHVTPMHKLASILTSRGFEPIVITPEFI--HNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLE 96 (479)
Q Consensus 19 ~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~--~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 96 (479)
+-.-|+--+..|..+|.++||+|.+-|-+.- .+.+.. .|+.+..+...-. ..+..-+..... -...|.
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~g~----~tl~~Kl~~~~e-R~~~L~ 77 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKHGG----VTLKEKLLESAE-RVYKLS 77 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-----hCCCeEeecccCC----ccHHHHHHHHHH-HHHHHH
Confidence 4456888899999999999999998887541 233444 6888877763211 111211111111 111245
Q ss_pred HHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcch
Q 011687 97 RLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 97 ~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (479)
+++.++ +||+.+. -..+-+..+|--+|+|.+.+...
T Consensus 78 ki~~~~----kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 78 KIIAEF----KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHhhc----CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 566565 9999999 45778899999999999998554
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.35 E-value=0.00082 Score=56.02 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred EEEEEeCCccccCCHHHHHH-HHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeeh-HHhhcccCccce
Q 011687 281 VIYISFGSWVSPIGEEKVKT-LALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQ-LKVLQHNAVGFY 358 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~~~~~~~~-l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~ 358 (479)
+.++++|++......+.+-. ++..+.+....+-+.+-+.. |+.+.+... +||.+.+|++. .++++.+++...
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~----~~~l~~~~~--~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG----PDELKRLRR--PNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES----S-HHCCHHH--CTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC----HHHHHHhcC--CCEEEcCCHHHHHHHHHhCCEEEE
Confidence 45566666112233333333 44445443334544443321 122211113 79999999874 447888998555
Q ss_pred Eec---cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 359 LTH---CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 359 I~H---gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
.+. |-.+++.|++++|+|+|+.+.. ....++. .+.|..+ .-+++++.++|.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 442 2359999999999999997761 2333444 5778777 66899999999999864
No 124
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.33 E-value=0.0012 Score=65.45 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=64.2
Q ss_pred CCceEEeeeeh-HHhhcccCccceEec--cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHH
Q 011687 336 RQGKVVPWAPQ-LKVLQHNAVGFYLTH--CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIE 412 (479)
Q Consensus 336 ~nv~~~~~~pq-~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~ 412 (479)
++|.+.++.++ ..++..+++-.+.++ |...++.||+++|+|+|+..... .....+.+ -..|..++.-+.++++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~~d~~~la 336 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPKGDIEALA 336 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCCCcHHHHH
Confidence 67777776665 457888888444444 33578999999999999875432 23455666 4788888778999999
Q ss_pred HHHHHHhcCHHHHH
Q 011687 413 DGLKKLKEDSEMKH 426 (479)
Q Consensus 413 ~~i~~vl~~~~~~~ 426 (479)
++|.+++++++..+
T Consensus 337 ~~i~~ll~~~~~~~ 350 (372)
T cd04949 337 EAIIELLNDPKLLQ 350 (372)
T ss_pred HHHHHHHcCHHHHH
Confidence 99999998875433
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.99 E-value=0.069 Score=48.13 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCceEEeeeeh----HHhhcccCccceEeccc----hhHHHHHHHhCcceecccCccc
Q 011687 336 RQGKVVPWAPQ----LKVLQHNAVGFYLTHCG----WNSTMEAIQSGKRLLCYPVAGD 385 (479)
Q Consensus 336 ~nv~~~~~~pq----~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~D 385 (479)
.|+.++++++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+....
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 67888877632 224444777 777776 7999999999999999887643
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.83 E-value=0.012 Score=49.14 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=63.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIM 91 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 91 (479)
||++++.....| ...+++.|.++||+|++++.....+... ...++.+..++.+.. ....++. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~----~~~~i~~~~~~~~~k-----~~~~~~~-~---- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE----IIEGIKVIRLPSPRK-----SPLNYIK-Y---- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh----HhCCeEEEEecCCCC-----ccHHHHH-H----
Confidence 466666555444 5688999999999999999965321221 126788887753311 1222222 1
Q ss_pred hHHHHHHHHHhhccCCceEEEeCCCcc---cHHHHHHHhC-CCcEeE
Q 011687 92 PIHLERLINKINEDGRVACVVVDLLAS---SAIGVACRCG-VPAAGF 134 (479)
Q Consensus 92 ~~~l~~~l~~l~~~~~~D~vi~D~~~~---~~~~~A~~lg-iP~v~~ 134 (479)
. .+..++++. +||+|.+..... .+..++..++ +|++..
T Consensus 64 ~-~l~k~ik~~----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 64 F-RLRKIIKKE----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred H-HHHHHhccC----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 245566555 899998877543 2445678888 888864
No 127
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.02 Score=57.66 Aligned_cols=137 Identities=18% Similarity=0.133 Sum_probs=91.5
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcC----CCCceEEeeeehH---Hh
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSN----SRQGKVVPWAPQL---KV 349 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~----~~nv~~~~~~pq~---~l 349 (479)
++..+||+||+. .....++.++.=...++..+.-++|..+++........+.+...+ .+++++.+-.|.. +-
T Consensus 427 p~~avVf~c~~n-~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~ 505 (620)
T COG3914 427 PEDAVVFCCFNN-YFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRAR 505 (620)
T ss_pred CCCeEEEEecCC-cccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHh
Confidence 467799999999 888889999999999999999999999875322221111111110 1456666555533 33
Q ss_pred hcccCccceEe---ccchhHHHHHHHhCcceecccCccchhh--HHHHH-HHHhcceeeeCCCCHHHHHHHHHHHh
Q 011687 350 LQHNAVGFYLT---HCGWNSTMEAIQSGKRLLCYPVAGDQFI--NCAYI-VKMWKIGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 350 L~~~~~~~~I~---HgG~~s~~eal~~GvP~l~~P~~~DQ~~--nA~rv-~~~~Gvg~~~~~~~~~~i~~~i~~vl 419 (479)
+.-+|+ |+- -||..|..|+|+.|||+|..+ ++|+- |+..+ .. +|+-..+-.-..+-+++++.--.
T Consensus 506 ~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~-agi~e~vA~s~~dYV~~av~~g~ 576 (620)
T COG3914 506 YGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATN-AGIPELVADSRADYVEKAVAFGS 576 (620)
T ss_pred hchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHh-cCCchhhcCCHHHHHHHHHHhcc
Confidence 344555 664 689999999999999988765 45542 33333 44 67766665566677777775444
No 128
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.73 E-value=0.33 Score=46.70 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred ehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhh----HHHHHHHHhcceeeeCC
Q 011687 345 PQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFI----NCAYIVKMWKIGIRVNG 405 (479)
Q Consensus 345 pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~----nA~rv~~~~Gvg~~~~~ 405 (479)
|+..+|+.++. .|||---.+=+.||+..|+|+.+++... +.. -.+.+++ .|+-..++.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 78889998887 3555555677899999999999999876 322 2234566 677766643
No 129
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.70 E-value=0.038 Score=57.02 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=80.2
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHhC---CCCe-EEEEcCCcCCCCChhhHh---hhcCCCCceEEeeeehHHhhcc
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEAL---GLPF-IWVLGFAWREGLPDGYLD---RVSNSRQGKVVPWAPQLKVLQH 352 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~---~~~~-iw~~~~~~~~~l~~~~~~---~~~~~~nv~~~~~~pq~~lL~~ 352 (479)
+.+++..|+ .. +...+..+++|+..+ ...+ +..+|.+.. .+.+.+ .....++|.+.++.+..++++.
T Consensus 319 ~~~il~vGr-l~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~---~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ 392 (500)
T TIGR02918 319 PFSIITASR-LA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE---KQKLQKIINENQAQDYIHLKGHRNLSEVYKD 392 (500)
T ss_pred CeEEEEEec-cc--cccCHHHHHHHHHHHHhhCCCeEEEEEECchh---HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHh
Confidence 356677788 43 334455566665432 2233 344564421 122222 2222367888888888889999
Q ss_pred cCccceEe---ccc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCC----CC----HHHHHHHHHHHhc
Q 011687 353 NAVGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNG----FG----KRDIEDGLKKLKE 420 (479)
Q Consensus 353 ~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~----~~----~~~i~~~i~~vl~ 420 (479)
+++ ||. .-| ..++.||+++|+|+|+..... .+...+++ -.-|..++. -+ .++++++|.++++
T Consensus 393 adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 393 YEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred CCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 888 665 233 478999999999999976531 24455666 345766642 22 7889999999995
Q ss_pred C
Q 011687 421 D 421 (479)
Q Consensus 421 ~ 421 (479)
+
T Consensus 467 ~ 467 (500)
T TIGR02918 467 S 467 (500)
T ss_pred h
Confidence 4
No 130
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.66 E-value=0.011 Score=57.66 Aligned_cols=95 Identities=11% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCceEEeeeehHHhhcc--cCccceEec-------cc------hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcce
Q 011687 336 RQGKVVPWAPQLKVLQH--NAVGFYLTH-------CG------WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIG 400 (479)
Q Consensus 336 ~nv~~~~~~pq~~lL~~--~~~~~~I~H-------gG------~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg 400 (479)
+||.+.+|+|+.++... .+.+++... +. .+-+.+++++|+|+|+.+ +...+..|++ .++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~-~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVE-NGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHh-CCce
Confidence 78999999998876432 133222221 11 123777899999999854 4578888999 7999
Q ss_pred eeeCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHcc
Q 011687 401 IRVNGFGKRDIEDGLKKLKED--SEMKHRLMNLYMRTMG 437 (479)
Q Consensus 401 ~~~~~~~~~~i~~~i~~vl~~--~~~~~~a~~l~~~~~~ 437 (479)
..++ +.+++.+++.++.++ ..++++++++++++++
T Consensus 282 ~~v~--~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 282 FVVD--SLEELPEIIDNITEEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred EEeC--CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 9997 667899999886522 4588999999999998
No 131
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.31 Score=44.47 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred eehHHhhcccCccceEeccc-hhHHHHHHHhCcceecc
Q 011687 344 APQLKVLQHNAVGFYLTHCG-WNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 344 ~pq~~lL~~~~~~~~I~HgG-~~s~~eal~~GvP~l~~ 380 (479)
=|+-+.|+.++. +|.-.. .+-..||...|+|+.+.
T Consensus 236 NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 236 NPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 489999988877 666555 57789999999998554
No 132
>PHA01633 putative glycosyl transferase group 1
Probab=96.41 E-value=0.029 Score=54.37 Aligned_cols=82 Identities=9% Similarity=0.022 Sum_probs=57.2
Q ss_pred CCceEE---eeeehH---HhhcccCccceEecc---c-hhHHHHHHHhCcceecccC------ccch------hhHHHHH
Q 011687 336 RQGKVV---PWAPQL---KVLQHNAVGFYLTHC---G-WNSTMEAIQSGKRLLCYPV------AGDQ------FINCAYI 393 (479)
Q Consensus 336 ~nv~~~---~~~pq~---~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~------~~DQ------~~nA~rv 393 (479)
++|.+. +++++. ++++.+++ ||.-. | -.++.||+++|+|+|+.-. .+|+ .+++.-.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 788887 445554 56777887 77642 3 4678999999999998743 2332 3333332
Q ss_pred HH-HhcceeeeCCCCHHHHHHHHHHHh
Q 011687 394 VK-MWKIGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 394 ~~-~~Gvg~~~~~~~~~~i~~~i~~vl 419 (479)
.+ +.|.|..++..+++++++++.+++
T Consensus 279 ~~~~~g~g~~~~~~d~~~la~ai~~~~ 305 (335)
T PHA01633 279 YDKEHGQKWKIHKFQIEDMANAIILAF 305 (335)
T ss_pred cCcccCceeeecCCCHHHHHHHHHHHH
Confidence 21 147788888899999999999995
No 133
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.26 E-value=0.17 Score=49.01 Aligned_cols=129 Identities=14% Similarity=0.055 Sum_probs=75.2
Q ss_pred CCcEEEEEeCCccc--cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEe--eeeh-HHhhcc
Q 011687 278 PNSVIYISFGSWVS--PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVP--WAPQ-LKVLQH 352 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~--~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~--~~pq-~~lL~~ 352 (479)
+++.|.+..|+-.. ..+.+.+.++++.+.+.++++++..++..+...-+.+.+..+ +..+.+ .+++ ..++++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~---~~~l~g~~sL~el~ali~~ 254 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALP---GAVVLPKMSLAEVAALLAG 254 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCC---CCeecCCCCHHHHHHHHHc
Confidence 45566666664122 367788888888887667777655453321111122322222 222332 2444 458888
Q ss_pred cCccceEeccchhHHHHHHHhCcceecc--cCccchhhHHHHHHHHhcce------eeeCCCCHHHHHHHHHHHh
Q 011687 353 NAVGFYLTHCGWNSTMEAIQSGKRLLCY--PVAGDQFINCAYIVKMWKIG------IRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~~GvP~l~~--P~~~DQ~~nA~rv~~~~Gvg------~~~~~~~~~~i~~~i~~vl 419 (479)
+++ ||+. -.|.+.=|.+.|+|+|++ |.... +-.= +|-. ..++.++++++.++++++|
T Consensus 255 a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~------~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 255 ADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPG------RTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred CCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHh------hccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 888 9985 578888899999999876 22111 1100 1111 1134499999999998765
No 134
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.95 E-value=0.069 Score=54.28 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=92.0
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCC-CChhhHhhhcC-CCCceEEeeeehHH-----h
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREG-LPDGYLDRVSN-SRQGKVVPWAPQLK-----V 349 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~-l~~~~~~~~~~-~~nv~~~~~~pq~~-----l 349 (479)
++..+||.+|-- ....++..++.-++.+...+.-++|.....-... --..+..+... .++|.+.+-++-.+ .
T Consensus 756 p~d~vvf~~FNq-LyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 756 PEDAVVFCNFNQ-LYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred CCCeEEEeechh-hhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 455699999987 7789999999999999999999999987432100 00011111110 15555555554332 3
Q ss_pred hcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHH-HHHHHhcceeeeCCCCHHHHHHHHHHHhcCHHH
Q 011687 350 LQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCA-YIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSEM 424 (479)
Q Consensus 350 L~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~-rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~~ 424 (479)
|..-.++-+.+. |..|.++.|+.|+|++.+|...--...|. .+.. +|+|-.+-+-..|-...+++-.+ |.++
T Consensus 835 LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~~eEY~~iaV~Lat-d~~~ 907 (966)
T KOG4626|consen 835 LADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKNREEYVQIAVRLAT-DKEY 907 (966)
T ss_pred hhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhhHHHHHHHHHHhhc-CHHH
Confidence 444444447776 67889999999999999998754444444 4677 89998665544444445554433 5443
No 135
>PRK14098 glycogen synthase; Provisional
Probab=95.92 E-value=0.1 Score=53.89 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=76.1
Q ss_pred CcEEEEEeCCccc-cCCHHHHHHHHHHHHhCCCCeEEEEcCCcC---CCCChhhHhhhcCCCCceEEeeeehH---Hhhc
Q 011687 279 NSVIYISFGSWVS-PIGEEKVKTLALTLEALGLPFIWVLGFAWR---EGLPDGYLDRVSNSRQGKVVPWAPQL---KVLQ 351 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~-~~~~~~~~~l~~al~~~~~~~iw~~~~~~~---~~l~~~~~~~~~~~~nv~~~~~~pq~---~lL~ 351 (479)
+.++++..|. .. ....+.+...+..+.+.+.++ .++|.+.. ..+ ..+.++.+ ++|.+...++.. .+++
T Consensus 306 ~~~~i~~vgR-l~~~KG~d~li~a~~~l~~~~~~l-vivG~G~~~~~~~l-~~l~~~~~--~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 306 ETPLVGVIIN-FDDFQGAELLAESLEKLVELDIQL-VICGSGDKEYEKRF-QDFAEEHP--EQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCCEEEEecc-ccccCcHHHHHHHHHHHHhcCcEE-EEEeCCCHHHHHHH-HHHHHHCC--CCEEEEEecCHHHHHHHHH
Confidence 3456777777 33 233344333333333334444 33443321 001 12222334 788888888764 5788
Q ss_pred ccCccceEecc---c-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHh
Q 011687 352 HNAVGFYLTHC---G-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 352 ~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl 419 (479)
.+|+ |+.-. | -.+.+||+++|+|.|+....+-........++ -+.|..++..+++.++++|.+++
T Consensus 381 ~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~-~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 381 GLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSED-KGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCC-CCceeEeCCCCHHHHHHHHHHHH
Confidence 8888 77543 2 24778999999988887654311110011123 36788888889999999999876
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.63 E-value=2.1 Score=41.95 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=67.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeEE-EeCCCCCCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEISC-MSIPDGLEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~~-~~i~~~l~~~~~~~~~~~~~~~ 87 (479)
|||+++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++- +.++.. . .... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi~~~~~--~----~~~~-~--- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMPLG--H----GALE-I--- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEEecccc--c----chhh-h---
Confidence 689999999999999999999999985 8999999998776666541 33432 222211 0 0000 0
Q ss_pred HHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 88 ENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
....+++++++.. ++|++|-=....-...++...|+|.-+
T Consensus 67 -----~~~~~l~~~lr~~-~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -----GERRRLGHSLREK-RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -----HHHHHHHHHHHhc-CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122344444443 899999654445556677777877655
No 137
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.48 E-value=0.028 Score=47.65 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCccccc--cccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHh
Q 011687 25 TPMHKLASILTSRGFEPIVITPEFIHNQ--ITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKI 102 (479)
Q Consensus 25 ~p~l~la~~L~~rGh~V~~~~~~~~~~~--i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 102 (479)
.-+..|+++|.++||+|+++++...... ... .++.++.++...... .......+. .+.+++ .
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~l-~- 68 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEE-----DGVRVHRLPLPRRPW-PLRLLRFLR--------RLRRLL-A- 68 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEE-----TTEEEEEE--S-SSS-GGGHCCHHH--------HHHHHC-H-
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccccc-----CCceEEeccCCccch-hhhhHHHHH--------HHHHHH-h-
Confidence 3467899999999999999997543221 223 577777776322211 001111111 123333 1
Q ss_pred hccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEc
Q 011687 103 NEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 103 ~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~ 135 (479)
....+||+|.+.... ..+..+....++|+|...
T Consensus 69 ~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 69 ARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 123399999988743 223334448899999853
No 138
>PHA01630 putative group 1 glycosyl transferase
Probab=95.46 E-value=0.55 Score=45.77 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=52.7
Q ss_pred eeeehHH---hhcccCccceEe--c-cc-hhHHHHHHHhCcceecccCcc--chhhH---HHHHHH----------Hhcc
Q 011687 342 PWAPQLK---VLQHNAVGFYLT--H-CG-WNSTMEAIQSGKRLLCYPVAG--DQFIN---CAYIVK----------MWKI 399 (479)
Q Consensus 342 ~~~pq~~---lL~~~~~~~~I~--H-gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n---A~rv~~----------~~Gv 399 (479)
.++|+.+ +++.+|+ |+. . .| ..++.||+++|+|+|+.-..+ |...+ ...+.. ..++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 6788888 653 2 22 568999999999999987643 32111 111110 0124
Q ss_pred eeeeCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHH
Q 011687 400 GIRVNGFGKRDIEDGLKKLKED---SEMKHRLMNLYMRT 435 (479)
Q Consensus 400 g~~~~~~~~~~i~~~i~~vl~~---~~~~~~a~~l~~~~ 435 (479)
|..++. +.+++.+++.+++.+ ++.+++..+-+...
T Consensus 274 G~~v~~-~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~ 311 (331)
T PHA01630 274 GYFLDP-DIEDAYQKLLEALANWTPEKKKENLEGRAILY 311 (331)
T ss_pred ccccCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 544433 567787888888865 45555544444333
No 139
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.25 E-value=0.024 Score=43.98 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=41.6
Q ss_pred hhhhhcCCCCCcEEEEEeCCccccC---CH--HHHHHHHHHHHhCCCCeEEEEcCCc
Q 011687 269 CIDWLDNQKPNSVIYISFGSWVSPI---GE--EKVKTLALTLEALGLPFIWVLGFAW 320 (479)
Q Consensus 269 l~~~l~~~~~~~~Vyvs~Gs~~~~~---~~--~~~~~l~~al~~~~~~~iw~~~~~~ 320 (479)
+..|+....+++.|+||+|| .... .. ..+..++++++.++..++..+....
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~-~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGT-SVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETH-HHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCcccccCCCCCEEEEEcCC-CccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 44799888899999999999 5432 22 5789999999999999999988654
No 140
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.65 E-value=0.52 Score=40.47 Aligned_cols=101 Identities=24% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHH
Q 011687 19 PAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERL 98 (479)
Q Consensus 19 ~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (479)
...|--.-+..|+++|+++||+|+++++... +.... . ........... ........+... ..+..+
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~-~~~~~------~-~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~ 75 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVK-DPIEE------E-LVKIFVKIPYP-IRKRFLRSFFFM-----RRLRRL 75 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-T-TS-SS------T-EEEE---TT-S-STSS--HHHHHH-----HHHHHH
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCC-ccchh------h-ccceeeeeecc-cccccchhHHHH-----HHHHHH
Confidence 3557777889999999999999999988642 22221 2 11111111000 011111112111 235556
Q ss_pred HHHhhccCCceEEEeCCCc-ccHHHHHHHhCCCcEeEcchh
Q 011687 99 INKINEDGRVACVVVDLLA-SSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 99 l~~l~~~~~~D~vi~D~~~-~~~~~~A~~lgiP~v~~~~~~ 138 (479)
+++. ++|+|-+.... .....++-. ++|.+......
T Consensus 76 i~~~----~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 76 IKKE----KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHH----T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHc----CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 6666 99999665544 333333434 99999875443
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.58 E-value=0.32 Score=42.12 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=53.0
Q ss_pred hCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-CCCCHHHHHHHHHHhchHHHHHHHHHhhc-cCCceEEEe
Q 011687 36 SRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN-EPKDFFAIEKVIENIMPIHLERLINKINE-DGRVACVVV 113 (479)
Q Consensus 36 ~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~D~vi~ 113 (479)
++||+|+++|.... .... +|+....+...-... ........++..........+ .+.+|++ ...||+|++
T Consensus 1 q~gh~v~fl~~~~~-~~~~------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~-a~~~L~~~Gf~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKR-PPIP------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVAR-AARQLRAQGFVPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCC-CCCC------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHH-HHHHHHHcCCCCCEEEE
Confidence 47999999996431 1221 477777665422111 111122222222221223222 3334433 338999999
Q ss_pred CCCcccHHHHHHHh-CCCcEeE
Q 011687 114 DLLASSAIGVACRC-GVPAAGF 134 (479)
Q Consensus 114 D~~~~~~~~~A~~l-giP~v~~ 134 (479)
.+....+.-+-+.+ ++|.+.+
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEE
Confidence 99778889999999 9999996
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.28 E-value=0.34 Score=37.07 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=44.9
Q ss_pred ccchhHHHHHHHhCcceecccCccchhhHHHHHHHHhc-ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 011687 361 HCGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWK-IGIRVNGFGKRDIEDGLKKLKEDSEMKHRLMNL 431 (479)
Q Consensus 361 HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~G-vg~~~~~~~~~~i~~~i~~vl~~~~~~~~a~~l 431 (479)
+|-..-+.|++++|+|+|.-+. +.....+.+ | -++..+ +.+++.+++..+++|++.+++..+-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN--DPEELAEKIEYLLENPEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4556789999999999998876 344443433 4 344444 8999999999999998755544333
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.18 E-value=3.1 Score=40.46 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=65.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeE-EEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEIS-CMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~-~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
||+++-..+.|++.-+.++.+.|++. +.+|++++.+.+.+.++. -+.++ ++.++.. ...... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~----~p~id~v~~~~~~------~~~~~~----~ 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER----MPEIRQAIDMPLG------HGALEL----T 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc----CchhceeeecCCc------ccchhh----h
Confidence 58899999999999999999999986 899999999876566653 12332 2222211 000000 0
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
...+++++++.. ++|++|.-....-...++...|+|.-+
T Consensus 67 -----~~~~~~~~lr~~-~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 -----ERRRLGRSLREE-RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -----HHHHHHHHHhhc-CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 112234444333 899999765555556677777877654
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=93.88 E-value=1.2 Score=48.88 Aligned_cols=168 Identities=11% Similarity=0.133 Sum_probs=91.2
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHh---CCCCeEEEEcCCcCCCCC---hhhHhhhcCCCCceEEeeeehH---Hhh
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEA---LGLPFIWVLGFAWREGLP---DGYLDRVSNSRQGKVVPWAPQL---KVL 350 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~---~~~~~iw~~~~~~~~~l~---~~~~~~~~~~~nv~~~~~~pq~---~lL 350 (479)
.+++...|. .. +.+-+..+++|+.. .+.++ +++|.+.....- ..+.++.+..++|.+..+.+.. .++
T Consensus 779 ~pLIg~VGR-L~--~QKGiDlLleA~~~Ll~~dvqL-VIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IY 854 (977)
T PLN02939 779 QPLVGCITR-LV--PQKGVHLIRHAIYKTAELGGQF-VLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIY 854 (977)
T ss_pred ceEEEEeec-CC--cccChHHHHHHHHHHhhcCCEE-EEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHH
Confidence 356777777 33 22333444444433 34444 444543211000 1222223222678888777764 478
Q ss_pred cccCccceEecc----chhHHHHHHHhCcceecccCcc--chhhH--HHHH-HHHhcceeeeCCCCHHHHHHHHHHHhc-
Q 011687 351 QHNAVGFYLTHC----GWNSTMEAIQSGKRLLCYPVAG--DQFIN--CAYI-VKMWKIGIRVNGFGKRDIEDGLKKLKE- 420 (479)
Q Consensus 351 ~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~--DQ~~n--A~rv-~~~~Gvg~~~~~~~~~~i~~~i~~vl~- 420 (479)
+.+|+ ||.-. --.+.+||+++|+|.|+....+ |.-.. ...+ ++ -+-|..++..+++.+.++|.++++
T Consensus 855 AaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfLf~~~D~eaLa~AL~rAL~~ 931 (977)
T PLN02939 855 AASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFTFLTPDEQGLNSALERAFNY 931 (977)
T ss_pred HhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEEecCCCHHHHHHHHHHHHHH
Confidence 88888 88542 2357899999999998876654 21111 1111 22 256777777889999999988763
Q ss_pred ---CHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 421 ---DSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 421 ---~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
++..+++..+ ..+.. .-+-...+++..+.++...
T Consensus 932 ~~~dpe~~~~L~~--~am~~----dFSWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 932 YKRKPEVWKQLVQ--KDMNI----DFSWDSSASQYEELYQRAV 968 (977)
T ss_pred hccCHHHHHHHHH--HHHHh----cCCHHHHHHHHHHHHHHHH
Confidence 5665544433 11221 1234445555555555443
No 145
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.19 E-value=3.1 Score=40.60 Aligned_cols=105 Identities=20% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVI 87 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 87 (479)
+|||+++-...-|++.-..++...|+++ +.++++++.+.+.+.+... +.++-+..-.. . ... .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~----p~I~~vi~~~~--~--~~~-----~-- 65 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN----PEIDKVIIIDK--K--KKG-----L-- 65 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC----hHhhhhccccc--c--ccc-----c--
Confidence 3899999999999999999999999998 4999999998876666541 22322111000 0 011 0
Q ss_pred HHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 88 ENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
.......+.+.++.. ++|+||.=...+=...++...++|.-.
T Consensus 66 ---~~~~~~~l~~~lr~~-~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 66 ---GLKERLALLRTLRKE-RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ---chHHHHHHHHHhhcc-CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 111123344444333 899999776555566677788887776
No 146
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.67 Score=39.30 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=45.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDG 71 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~ 71 (479)
+|||++...|+-|-..-++.|++.|.++|+.|-=+.++..++.-.. .||+.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-----IGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-----eeeEEEEccCC
Confidence 6999999999999999999999999999999976666443333333 68888888743
No 147
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.39 E-value=9.2 Score=36.20 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=58.6
Q ss_pred CCceEEeeee---hHHhhcccCccceEec---cchh-HHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCH
Q 011687 336 RQGKVVPWAP---QLKVLQHNAVGFYLTH---CGWN-STMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGK 408 (479)
Q Consensus 336 ~nv~~~~~~p---q~~lL~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~ 408 (479)
+++.+.+++| ...++..+++ ++.- .|.| ++.||+++|+|+|..... .....+.+ .+.|..+...+.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~~~~~~~~ 329 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGLLVPPGDV 329 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceEecCCCCH
Confidence 5677788888 3446766776 6665 3543 369999999999666544 44445555 334663322468
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 011687 409 RDIEDGLKKLKEDSEMKHRLMN 430 (479)
Q Consensus 409 ~~i~~~i~~vl~~~~~~~~a~~ 430 (479)
+.+.+++..++++.+.+++..+
T Consensus 330 ~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 330 EELADALEQLLEDPELREELGE 351 (381)
T ss_pred HHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999988755554443
No 148
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.32 E-value=0.51 Score=41.99 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i 53 (479)
|||++.-=-+. +---+..|+++|.+.||+|+++.+...+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 67777765444 4456778999997778999999997644433
No 149
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.46 E-value=0.78 Score=42.85 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchh--hHHHHHHHHhcceeeeCCCCHHHHH
Q 011687 336 RQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQF--INCAYIVKMWKIGIRVNGFGKRDIE 412 (479)
Q Consensus 336 ~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~--~nA~rv~~~~Gvg~~~~~~~~~~i~ 412 (479)
+|..+. .|-...++|.+.++ .|--.| ..+-+++-.|||+|.+|-.+-|+ .-|+|-.+-+|+.+.+-.-.+..-.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~ 370 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAA 370 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHH
Confidence 355554 55555666666665 443333 23455678899999999999875 5677766658888888665555555
Q ss_pred HHHHHHhcCHHHHHHHHHHH-HHHcc
Q 011687 413 DGLKKLKEDSEMKHRLMNLY-MRTMG 437 (479)
Q Consensus 413 ~~i~~vl~~~~~~~~a~~l~-~~~~~ 437 (479)
....++|.|+.+.++++.-. +++-+
T Consensus 371 ~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 371 QAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHHhcChHHHHHHHhcchhhccC
Confidence 56666999999888877443 34433
No 150
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=90.35 E-value=2.1 Score=40.22 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCce-EEeeeehHHhhcccCccceEeccchhHHHHHHHh
Q 011687 296 EKVKTLALTLEAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGK-VVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQS 373 (479)
Q Consensus 296 ~~~~~l~~al~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~-~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~ 373 (479)
.+...+.++.+.. +.+++++..+.........+.+......++. +.+-++-.+||.+++. +||-. .++-.||+.+
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~ 217 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLH 217 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHc
Confidence 3445555555555 5666666655321111222222221113333 3467888899999998 77764 4578999999
Q ss_pred CcceecccC
Q 011687 374 GKRLLCYPV 382 (479)
Q Consensus 374 GvP~l~~P~ 382 (479)
|+|++++..
T Consensus 218 gkpVi~~G~ 226 (269)
T PF05159_consen 218 GKPVIVFGR 226 (269)
T ss_pred CCceEEecC
Confidence 999999853
No 151
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=90.07 E-value=0.79 Score=45.42 Aligned_cols=109 Identities=8% Similarity=0.047 Sum_probs=66.7
Q ss_pred CCceEE-eeeehHHhhcccCccceEeccchhHHHHHHHhCcceecccCccchhhHHHH----HHHHhcceeeeCCCCHHH
Q 011687 336 RQGKVV-PWAPQLKVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAGDQFINCAY----IVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 336 ~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~nA~r----v~~~~Gvg~~~~~~~~~~ 410 (479)
+++..+ +..+..++|..+|+ +||-- ...+.|.+..++|+|......|+....+- .++ ...|..+ .+.++
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~--~~~~e 325 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV--YNFEE 325 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE--SSHHH
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee--CCHHH
Confidence 677776 55578899999999 99987 45889999999999988776665532210 111 1222222 77899
Q ss_pred HHHHHHHHhcCHH-HHHHHHHHHHHHcccccCCCchhHHHHH
Q 011687 411 IEDGLKKLKEDSE-MKHRLMNLYMRTMGDDGARARVMNNLTG 451 (479)
Q Consensus 411 i~~~i~~vl~~~~-~~~~a~~l~~~~~~~~~~g~~~~~~~~~ 451 (479)
|.++|+.+++++. ++++.++..+++-+. ..|.++++.++.
T Consensus 326 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~Dg~s~eri~~~ 366 (369)
T PF04464_consen 326 LIEAIENIIENPDEYKEKREKFRDKFFKY-NDGNSSERIVNY 366 (369)
T ss_dssp HHHHHTTHHHHHHHTHHHHHHHHHHHSTT---S-HHHHHHHH
T ss_pred HHHHHHhhhhCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHH
Confidence 9999999986544 566778888888663 455544444443
No 152
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.93 E-value=2 Score=44.61 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCceEEeeeeh---HHhhcccCccceEecc---chhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHH
Q 011687 336 RQGKVVPWAPQ---LKVLQHNAVGFYLTHC---GWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKR 409 (479)
Q Consensus 336 ~nv~~~~~~pq---~~lL~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~ 409 (479)
.+|.+.++... ...+.+..+ +|.=+ |.++..||+.+|+|+| .......|++ -.=|..+ -+..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li--~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII--DDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe--CCHH
Confidence 35666677773 335666665 88766 6779999999999999 3334445555 3445555 6789
Q ss_pred HHHHHHHHHhcCHH
Q 011687 410 DIEDGLKKLKEDSE 423 (479)
Q Consensus 410 ~i~~~i~~vl~~~~ 423 (479)
+|.+++..+|++.+
T Consensus 477 ~l~~al~~~L~~~~ 490 (519)
T TIGR03713 477 ELLKALDYYLDNLK 490 (519)
T ss_pred HHHHHHHHHHhCHH
Confidence 99999999998875
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.38 E-value=1.2 Score=38.62 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=57.1
Q ss_pred ecCCCCCCHHHHHHHHHHH-Hh-CCCeEEEEcCCccccc--cccCCCC-CCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 16 VPYPAQGHVTPMHKLASIL-TS-RGFEPIVITPEFIHNQ--ITSSMDP-RSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 16 ~~~~~~gH~~p~l~la~~L-~~-rGh~V~~~~~~~~~~~--i~~~~~~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
+..+++||..-|+.|.+.+ .+ ..++..+++....... +.+.... ....++..+|....- ........+..+..
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v-~q~~~~~~~~~l~~- 80 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREV-GQSYLTSIFTTLRA- 80 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEe-chhhHhhHHHHHHH-
Confidence 4458999999999999999 33 3566666666432111 1110000 001123333311110 00111112222222
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHh------CCCcEeE
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRC------GVPAAGF 134 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~l------giP~v~~ 134 (479)
....+. ++.+. +||+||+..-. ...+.+|..+ |.+.|.+
T Consensus 81 ~~~~~~-il~r~----rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 81 FLQSLR-ILRRE----RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHH-HHHHh----CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 111122 22222 89999988744 5567888888 9999986
No 154
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.47 E-value=0.7 Score=37.36 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=27.8
Q ss_pred CEEEEecCCCCC---CHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQG---HVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~g---H~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||+|+.-|-.+ .-.-.++++.+-++|||+|.+++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 688898876544 45788999999999999999999864
No 155
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.22 E-value=3.2 Score=39.98 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=33.3
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
+||+|++. ||-|-..-.-++|-.|++.|.+|.+++++..++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 67777776 667998889999999999999888887765433
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.19 E-value=1.7 Score=43.93 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCC-CCeEEEEcCCcCCCCChhhHhhhcCCCCceEE-eeee-h-HHhhcccCccceEeccc--hhHHH
Q 011687 295 EEKVKTLALTLEALG-LPFIWVLGFAWREGLPDGYLDRVSNSRQGKVV-PWAP-Q-LKVLQHNAVGFYLTHCG--WNSTM 368 (479)
Q Consensus 295 ~~~~~~l~~al~~~~-~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~-~~~p-q-~~lL~~~~~~~~I~HgG--~~s~~ 368 (479)
.+.++.+....++++ ..|-...++.. .+.+.+- ..-+|+.+. ++.+ . .+++..|++=+-|+||+ ..++.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~----s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~ 365 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEM----SSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVR 365 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcc----cHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHH
Confidence 567777777777764 44533333221 1222111 111677777 6677 3 56999999988889977 69999
Q ss_pred HHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHcc
Q 011687 369 EAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKEDSE-MKHRLMNLYMRTMG 437 (479)
Q Consensus 369 eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~~~-~~~~a~~l~~~~~~ 437 (479)
||+.+|+|++..-...... ..+.. |..+..-+.++++++|.++|++++ +++++.+-++.+..
T Consensus 366 eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~ 428 (438)
T TIGR02919 366 RAFEYNLLILGFEETAHNR---DFIAS----ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREHAND 428 (438)
T ss_pred HHHHcCCcEEEEecccCCc---ccccC----CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc
Confidence 9999999999887553211 11111 444555778999999999998874 55555555544443
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.69 E-value=2.4 Score=39.54 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=52.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc-ccccCCCCCCC-eEEEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN-QITSSMDPRSE-ISCMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~-~i~~~~~~~~g-~~~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
|+|+++. +.| . -..|++.|.++||+|+..+...... .+.+ .| ..++ .+.+.
T Consensus 1 m~ILvlG--GT~--e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-----~g~~~v~--~g~l~--------------- 53 (256)
T TIGR00715 1 MTVLLMG--GTV--D-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-----HQALTVH--TGALD--------------- 53 (256)
T ss_pred CeEEEEe--chH--H-HHHHHHHHHhCCCeEEEEEccCCccccccc-----cCCceEE--ECCCC---------------
Confidence 4566654 333 2 6789999999999999888765322 2222 22 2221 11111
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCccc------HHHHHHHhCCCcEeE
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASS------AIGVACRCGVPAAGF 134 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~------~~~~A~~lgiP~v~~ 134 (479)
...+.+++++- ++|+||--..-++ +..+|+.+|||++.+
T Consensus 54 ---~~~l~~~l~~~----~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 ---PQELREFLKRH----SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ---HHHHHHHHHhc----CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 11244455443 8998773332233 458899999999996
No 158
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.62 E-value=4.6 Score=41.27 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred eeeehHH---hhcccCccceEe---ccch-hHHHHHHHhCcc----eecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 342 PWAPQLK---VLQHNAVGFYLT---HCGW-NSTMEAIQSGKR----LLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 342 ~~~pq~~---lL~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
..+++.+ +++.+|+ |+. +-|+ .++.||+++|+| +|+.-+.+- +. . ++-|..++..+.+.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~-l~~gllVnP~d~~~ 411 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---E-LNGALLVNPYDIDG 411 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---H-hCCcEEECCCCHHH
Confidence 4556655 4667777 775 3354 678899999999 666655532 22 2 33467777789999
Q ss_pred HHHHHHHHhcC--HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHH
Q 011687 411 IEDGLKKLKED--SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDL 456 (479)
Q Consensus 411 i~~~i~~vl~~--~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (479)
++++|.++|+. ++-+++.+++.+.+.. -+...-.+.+++.+
T Consensus 412 lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 412 MADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 99999999964 4566667777777654 33444455555433
No 159
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=86.19 E-value=5.3 Score=43.54 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=69.2
Q ss_pred EEeeeehHH---hhcccCccceEec---cc-hhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHH
Q 011687 340 VVPWAPQLK---VLQHNAVGFYLTH---CG-WNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIE 412 (479)
Q Consensus 340 ~~~~~pq~~---lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~ 412 (479)
+.+++++.+ +++.+++ |+.- -| ..++.||+++|+|-..+|+..+--.-+. + +.-|+.++..+.++++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P~d~~~la 419 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNPNDIEGIA 419 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECCCCHHHHH
Confidence 346778765 5666777 6653 24 4678899999775322232222111111 2 3337777778899999
Q ss_pred HHHHHHhcC--HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 413 DGLKKLKED--SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 413 ~~i~~vl~~--~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
++|.++|+. ++-+++.+++.+.+.. -+...-++.+++.+....
T Consensus 420 ~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 420 AAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 999999964 4556666666666544 346677777777776654
No 160
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=86.00 E-value=6.6 Score=38.57 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=68.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeE-EEeCCCCCCCCCCCCHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEIS-CMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~-~~~i~~~l~~~~~~~~~~~~~ 85 (479)
.+|||+++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++. -+.++ ++.++.. . ......+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~----~P~id~vi~~~~~----~-~~~~~~~~ 74 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE----NPEINALYGIKNK----K-AGASEKIK 74 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc----CCCceEEEEeccc----c-ccHHHHHH
Confidence 36899999999999999999999999987 899999999877666554 13343 2333311 0 00111111
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
.+..++++++.. ++|++|.-....-...++...|.|..+
T Consensus 75 --------~~~~l~~~lr~~-~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 --------NFFSLIKVLRAN-KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --------HHHHHHHHHhhC-CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 122234444433 899999654344455677777877755
No 161
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.48 E-value=13 Score=40.82 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=64.7
Q ss_pred HhhcccCccceEec---cch-hHHHHHHHhCcc---eecccCccchhhHHHHHHHHhc-ceeeeCCCCHHHHHHHHHHHh
Q 011687 348 KVLQHNAVGFYLTH---CGW-NSTMEAIQSGKR---LLCYPVAGDQFINCAYIVKMWK-IGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 348 ~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP---~l~~P~~~DQ~~nA~rv~~~~G-vg~~~~~~~~~~i~~~i~~vl 419 (479)
.+++.+++ |+.- -|+ .+..|++++|+| +++++-+ -..+. . +| -|+.++..+.+.++++|.++|
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~---~-l~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ---S-LGAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh---h-hcCCeEEECCCCHHHHHHHHHHHH
Confidence 46677777 7644 366 567799999999 3444322 22222 1 33 477888899999999999999
Q ss_pred c-C-HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 420 E-D-SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 420 ~-~-~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
+ + ++-+++.+++.+.... -+...-.+.+++.++...
T Consensus 442 ~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 442 NMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred hCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 6 4 3455556666666665 335556666776666554
No 162
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.94 E-value=10 Score=34.98 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i 53 (479)
|||++.- -..=|---...|++.|. .+++|+++.++..+...
T Consensus 1 mrILlTN-DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTN-DDGIHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEec-CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4555543 22234445667888887 99999999998754444
No 163
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=84.66 E-value=0.91 Score=37.42 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=35.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITS 55 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~ 55 (479)
|||++...|+.+-+. ...+.++|.++|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 578888888776666 99999999999999999999876665554
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.57 E-value=2 Score=35.77 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|++.+|++.+.++-+|-.-..-++..|.++|++|+++....
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~v 41 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMT 41 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 35789999999999999999999999999999999999754
No 165
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=82.86 E-value=1.6 Score=41.90 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=32.3
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
||++|+.. ||-|-..-..++|-.++++|++|.+++.+..+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 56777775 67799999999999999999999999987643
No 166
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=82.83 E-value=8.5 Score=33.40 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=57.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEE---cCCcc---ccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVI---TPEFI---HNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~---~~~~~---~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
--|.+++..+.|-....+.+|-..+.+|++|.++ =.... ...++. .++++.....++.... .+.....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-----~~~~~~~~g~g~~~~~-~~~~~~~ 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-----HGVEFQVMGTGFTWET-QNREADT 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-----cCcEEEECCCCCeecC-CCcHHHH
Confidence 3566777799999999999999999999999665 22210 122333 3677777776544221 1111111
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
..+...+....+.+. +.++|+||.|...
T Consensus 80 ----~~~~~~~~~a~~~l~-~~~~DlvVLDEi~ 107 (173)
T TIGR00708 80 ----AIAKAAWQHAKEMLA-DPELDLVLLDELT 107 (173)
T ss_pred ----HHHHHHHHHHHHHHh-cCCCCEEEehhhH
Confidence 113333333333333 3389999999854
No 167
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.31 E-value=14 Score=31.27 Aligned_cols=136 Identities=19% Similarity=0.299 Sum_probs=71.3
Q ss_pred cEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceE
Q 011687 280 SVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYL 359 (479)
Q Consensus 280 ~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I 359 (479)
|.|-|-+|| ..+....+++...|++++..+-..+.+-+. .|+.+.+ ++...+- ..+++ ||
T Consensus 1 p~V~Ii~gs---~SD~~~~~~a~~~L~~~gi~~~~~V~saHR--~p~~l~~------------~~~~~~~-~~~~v--iI 60 (150)
T PF00731_consen 1 PKVAIIMGS---TSDLPIAEEAAKTLEEFGIPYEVRVASAHR--TPERLLE------------FVKEYEA-RGADV--II 60 (150)
T ss_dssp -EEEEEESS---GGGHHHHHHHHHHHHHTT-EEEEEE--TTT--SHHHHHH------------HHHHTTT-TTESE--EE
T ss_pred CeEEEEeCC---HHHHHHHHHHHHHHHHcCCCEEEEEEeccC--CHHHHHH------------HHHHhcc-CCCEE--EE
Confidence 356677787 456788889999999988766555544322 2332211 1111110 12345 88
Q ss_pred eccchh----HHHHHHHhCcceecccCccchhhHHHH---HHHH-hcceeee---CC-CCHHHHHHHHHHHhcCHHHHHH
Q 011687 360 THCGWN----STMEAIQSGKRLLCYPVAGDQFINCAY---IVKM-WKIGIRV---NG-FGKRDIEDGLKKLKEDSEMKHR 427 (479)
Q Consensus 360 ~HgG~~----s~~eal~~GvP~l~~P~~~DQ~~nA~r---v~~~-~Gvg~~~---~~-~~~~~i~~~i~~vl~~~~~~~~ 427 (479)
.=.|.. ++..++ .-+|+|.+|....+.....- +.+. -|++... ++ .+...++-.|-.+ .+++++++
T Consensus 61 a~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d~~l~~k 138 (150)
T PF00731_consen 61 AVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KDPELREK 138 (150)
T ss_dssp EEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T-HHHHHH
T ss_pred EECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CCHHHHHH
Confidence 877753 333333 37999999988775433221 2220 2444322 11 4444444444322 68999999
Q ss_pred HHHHHHHHcc
Q 011687 428 LMNLYMRTMG 437 (479)
Q Consensus 428 a~~l~~~~~~ 437 (479)
.+..++++++
T Consensus 139 l~~~~~~~~~ 148 (150)
T PF00731_consen 139 LRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998888765
No 168
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.03 E-value=17 Score=34.39 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=36.1
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 7 TKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 7 ~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.++.+|.+...|+-|--.-.-.|...|.++||+|-++.-+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 34567889999999999999999999999999999998854
No 169
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=81.56 E-value=7.7 Score=37.52 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=39.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQIT 54 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~ 54 (479)
|||+++-..+.|++.-+.++.+.|++. +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 689999999999999999999999986 99999999987766554
No 170
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=80.77 E-value=4.9 Score=40.95 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=35.2
Q ss_pred CCCEEEEecCCCCCCHHHHH------------HHHHHHHhCCCeEEEEcCCc
Q 011687 9 KKNKILMVPYPAQGHVTPMH------------KLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l------------~la~~L~~rGh~V~~~~~~~ 48 (479)
+.+||++...|+.-.+.|.. +||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 46799999999998888875 89999999999999999764
No 171
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=80.23 E-value=43 Score=31.97 Aligned_cols=76 Identities=12% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCceEE-eeee---hHHhhcccCccceEec--cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeee--CCCC
Q 011687 336 RQGKVV-PWAP---QLKVLQHNAVGFYLTH--CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRV--NGFG 407 (479)
Q Consensus 336 ~nv~~~-~~~p---q~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~--~~~~ 407 (479)
+++.+. +++| +..+|+.||++-|+|+ =|.|+++-.++.|+|+++--. -+.|....+ .|+-+-. +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqdl~e--~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQDLTE--QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHHHHh--CCCeEEecCCccc
Confidence 577776 7777 6779999999888876 479999999999999987642 244444333 3776643 3376
Q ss_pred HHHHHHHHH
Q 011687 408 KRDIEDGLK 416 (479)
Q Consensus 408 ~~~i~~~i~ 416 (479)
...+.++=+
T Consensus 281 ~~~v~e~~r 289 (322)
T PRK02797 281 EDIVREAQR 289 (322)
T ss_pred HHHHHHHHH
Confidence 666655533
No 172
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=80.01 E-value=10 Score=35.19 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
++|+++..-+-| ..||+.|.++|++|++.+...+.. ... .+...+ ...+.
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~-----~~~~v~--~G~l~----------------- 52 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD-----LPGPVR--VGGFG----------------- 52 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc-----CCceEE--ECCCC-----------------
Confidence 567777655545 478999999999988877654322 221 233222 11110
Q ss_pred chHHHHHHHHHhhccCCceEEE--eCCCcc----cHHHHHHHhCCCcEeE
Q 011687 91 MPIHLERLINKINEDGRVACVV--VDLLAS----SAIGVACRCGVPAAGF 134 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi--~D~~~~----~~~~~A~~lgiP~v~~ 134 (479)
-.+.+.+++++- ++++|| +++|.- -+..+|+.+|||++.+
T Consensus 53 ~~~~l~~~l~~~----~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 GAEGLAAYLREE----GIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CHHHHHHHHHHC----CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 122344444433 888877 444431 1568899999999997
No 173
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.64 E-value=2.5 Score=37.47 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=33.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
.+||++...|+.|=+.-...+++.|.++||+|.++.++..
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 5788887777766665579999999999999999999764
No 174
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=79.30 E-value=9.5 Score=37.95 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred EEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 12 KILMVP-YPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 12 ~i~~~~-~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
+|++.. ..+.|-..-++.|.++|++||++|.-+=-.. +.|. ++ |+..-.+.+..+...+. .
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGP--DYID------P~--~H~~atG~~srNLD~~m--------m 63 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGP--DYID------PG--YHTAATGRPSRNLDSWM--------M 63 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCC--CccC------ch--hhhHhhCCccCCCchhh--------c
Confidence 344444 4566999999999999999999997553322 2332 11 22222233221111111 1
Q ss_pred chHHHHHHHHHhhccCCceEEEeCC------------CcccHHHHHHHhCCCcEeEcchh
Q 011687 91 MPIHLERLINKINEDGRVACVVVDL------------LASSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~------------~~~~~~~~A~~lgiP~v~~~~~~ 138 (479)
..+.+++++.+-. ...|+.|.+. -..++..+|+.+|+|+|.+....
T Consensus 64 ~~~~v~~~f~~~~--~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~ 121 (451)
T COG1797 64 GEEGVRALFARAA--ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDAS 121 (451)
T ss_pred CHHHHHHHHHHhc--CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCc
Confidence 2222333332221 1344444322 23567899999999999997754
No 175
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.26 E-value=27 Score=29.86 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=55.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEE---EcCCccc---cccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHH
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIV---ITPEFIH---NQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~---~~~~~~~---~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~ 85 (479)
.|.+++.++.|-....+.+|-..+.+|++|.+ +-..... ..++. ..++++.....+..... .+.....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~----l~~v~~~~~g~~~~~~~-~~~~~~~- 77 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER----LPNIEIHRMGRGFFWTT-ENDEEDI- 77 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh----CCCcEEEECCCCCccCC-CChHHHH-
Confidence 46777888999999999999999999999999 4442111 11222 14677776664432211 1111111
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
..+...++...+.+. ...+|+||.|...
T Consensus 78 ---~~a~~~~~~a~~~~~-~~~~dLlVLDEi~ 105 (159)
T cd00561 78 ---AAAAEGWAFAKEAIA-SGEYDLVILDEIN 105 (159)
T ss_pred ---HHHHHHHHHHHHHHh-cCCCCEEEEechH
Confidence 112233332222222 3489999999855
No 176
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=78.26 E-value=53 Score=30.58 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
++|||++.-=-+. |---+..|+++|.+.| +|+++.|..-+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 3688887663332 2245678899998888 899999976433
No 177
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.10 E-value=10 Score=34.08 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.1
Q ss_pred CEEEEecCC--CCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYP--AQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~--~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.++.+++.| +-|-..-..+|+..|+.+|++|.++-.+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 456666654 6699999999999999999999999875
No 178
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=77.61 E-value=13 Score=28.21 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhccC
Q 011687 27 MHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKINEDG 106 (479)
Q Consensus 27 ~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (479)
++.+++.|.+.|++| ++|.. ..+.+++ .|+.+...-.....+. ..+++.++. .
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~-----~Gi~~~~~~~ki~~~~-------------------~~i~~~i~~-g 54 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLRE-----AGLPVKTLHPKVHGGI-------------------LAILDLIKN-G 54 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHH-----CCCcceeccCCCCCCC-------------------HHHHHHhcC-C
Confidence 468999999999999 46654 3466766 6776532111111110 013333333 3
Q ss_pred CceEEEeCCCc---------ccHHHHHHHhCCCcE
Q 011687 107 RVACVVVDLLA---------SSAIGVACRCGVPAA 132 (479)
Q Consensus 107 ~~D~vi~D~~~---------~~~~~~A~~lgiP~v 132 (479)
++|+||..+.. +....+|...+||++
T Consensus 55 ~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 55 EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 89999975421 123467888999986
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.54 E-value=4.1 Score=32.82 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|+++.+.++-.|.....-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 578889999999999999999999999999888764
No 180
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=76.43 E-value=18 Score=33.46 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=26.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i 53 (479)
|||++.-=-+ =|---...|+++|.+.| +|+++.+..-+...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 4666544222 23344678899999888 99999997644433
No 181
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=37 Score=32.84 Aligned_cols=125 Identities=18% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCC-CCCHHHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNE-PKDFFAIEKVI 87 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~-~~~~~~~~~~~ 87 (479)
++.+++++..|.-||-=.|.-=|..|++.|.+|.+++.-...+. ++ ..+-+.++++.++.....+. +.-..-.++.+
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~-l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf 88 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EE-LLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVF 88 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HH-HhcCCceEEEeCCCCcccCCCchhhhhHHHHH
Confidence 47889999999999999999999999999999999986432111 11 11137899999885433221 22223334444
Q ss_pred HHhchHHHHHHHHHhhccCCceEEEeCC-CcccHHHHH----HHhCCCcEeEcchhHH
Q 011687 88 ENIMPIHLERLINKINEDGRVACVVVDL-LASSAIGVA----CRCGVPAAGFWPAMLA 140 (479)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~D~vi~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~ 140 (479)
+... ..+..++. ..++|+++.-. =+.....++ .-.|..+++=|....+
T Consensus 89 ~Qfl-~Ll~aL~~----~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 89 WQFL-SLLWALFV----LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred HHHH-HHHHHHHh----ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 4422 22333332 22789888664 224444444 3447777776654433
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=76.11 E-value=22 Score=30.54 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.8
Q ss_pred cceEeccc------hhHHHHHHHhCcceecccC
Q 011687 356 GFYLTHCG------WNSTMEAIQSGKRLLCYPV 382 (479)
Q Consensus 356 ~~~I~HgG------~~s~~eal~~GvP~l~~P~ 382 (479)
+.+++|.| .+.+.+|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 33888887 4577899999999999963
No 183
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=75.23 E-value=10 Score=38.89 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=53.6
Q ss_pred eeeehHH---hhcccCccceEe---ccch-hHHHHHHHhCcc----eecccCccchhhHHHHHHHHhcceeeeCCCCHHH
Q 011687 342 PWAPQLK---VLQHNAVGFYLT---HCGW-NSTMEAIQSGKR----LLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRD 410 (479)
Q Consensus 342 ~~~pq~~---lL~~~~~~~~I~---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~ 410 (479)
+++++.+ +++.+|+ ||. +-|+ .++.||+++|+| +|+.-..+- +. . ..-|..++..+.++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~~---~-~~~g~lv~p~d~~~ 416 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----AE---E-LSGALLVNPYDIDE 416 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----hh---h-cCCCEEECCCCHHH
Confidence 6677765 5777887 664 3454 567999999999 554433321 11 1 12366777788999
Q ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHHc
Q 011687 411 IEDGLKKLKEDS--EMKHRLMNLYMRTM 436 (479)
Q Consensus 411 i~~~i~~vl~~~--~~~~~a~~l~~~~~ 436 (479)
++++|.++++++ +-+++.++..+.+.
T Consensus 417 la~ai~~~l~~~~~e~~~~~~~~~~~v~ 444 (460)
T cd03788 417 VADAIHRALTMPLEERRERHRKLREYVR 444 (460)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999654 33333444444443
No 184
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=75.20 E-value=59 Score=30.20 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=25.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
|||++.-=-+. |---+..|+++|.+ +|+|+++.|...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 56666653222 22237788898864 68999999976433
No 185
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=74.68 E-value=6.5 Score=29.13 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
++-++++..|...|...+..+|+.|+++|+.|...=.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4788888899999999999999999999999986654
No 186
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=73.11 E-value=36 Score=30.10 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=60.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC---CccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP---EFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~---~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~ 85 (479)
..-.|.+++..+.|-....+.+|-..+.+|++|.++-- ......... .....++++.....++.... .+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~-l~~l~~v~~~~~g~~~~~~~-~~~~---- 94 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNL-LEFGGGVEFHVMGTGFTWET-QDRE---- 94 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHH-HhcCCCcEEEECCCCCcccC-CCcH----
Confidence 35688999999999999999999999999999998752 100011100 11123677777665433211 1111
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
.-...+...+....+.+. +.++|+||.|...
T Consensus 95 e~~~~~~~~~~~a~~~l~-~~~ydlvVLDEi~ 125 (191)
T PRK05986 95 RDIAAAREGWEEAKRMLA-DESYDLVVLDELT 125 (191)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCCEEEEehhh
Confidence 111223333443333333 3489999999854
No 187
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=72.93 E-value=27 Score=34.06 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=67.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCccccccccCCCCCCCeE-EEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITSSMDPRSEIS-CMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~~~~~~~g~~-~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
||+++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++. .+.++ ++.++..-. . .....+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~----~p~vd~vi~~~~~~~----~---~~~~~~~ 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE----NPDINALYGLDRKKA----K---AGERKLA 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc----CCCccEEEEeChhhh----c---chHHHHH
Confidence 58888889999999999999999986 899999999877666654 13343 333331100 0 0001111
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
. +.+++.+++.. ++|++|.-.....+..++...|+|.-+
T Consensus 70 ~-----~~~l~~~lr~~-~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 N-----QFHLIKVLRAN-RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred H-----HHHHHHHHHhC-CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 1 12233444333 899999654456677888888999765
No 188
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=72.79 E-value=14 Score=33.09 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=34.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.++++.+.++-.|-....-++..|.++|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 56999999999999999999999999999999998864
No 189
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.19 E-value=2.5 Score=37.19 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCEEEEecCCCCCCHHHH------------HHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC
Q 011687 10 KNKILMVPYPAQGHVTPM------------HKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~------------l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~ 69 (479)
.+||++...|+.-.+.|. ..||+++..+|++|+++..+. .+.. ..++..+.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~---~~~~----p~~~~~i~v~ 67 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS---SLPP----PPGVKVIRVE 67 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT---S--------TTEEEEE-S
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc---cccc----cccceEEEec
Confidence 456666666666555553 589999999999999999974 1211 1467766544
No 190
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=72.11 E-value=11 Score=35.04 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=52.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
|||+++..-+-| ..|++.|.++|+ |.+-+..++...+.. ....+...+ ..++.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~--~~~~~~~v~--~G~lg----------------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLK--PELPGLEVR--VGRLG----------------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhc--cccCCceEE--ECCCC-----------------
Confidence 677777655545 479999999998 665554443233321 000112221 11110
Q ss_pred chHHHHHHHHHhhccCCceEEE--eCCCc----ccHHHHHHHhCCCcEeE
Q 011687 91 MPIHLERLINKINEDGRVACVV--VDLLA----SSAIGVACRCGVPAAGF 134 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi--~D~~~----~~~~~~A~~lgiP~v~~ 134 (479)
-...+.+++++- ++|+|| +++|. --+..+|+.+|||++.+
T Consensus 54 ~~~~l~~~l~~~----~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 DEEGLAEFLREN----GIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred CHHHHHHHHHhC----CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 222344455443 888888 44443 11568899999999996
No 191
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=71.96 E-value=55 Score=29.87 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=36.0
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
.-|.|+.. ||-|-..-.+.||.+|+++|-+|+++=.+..++...
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHH
Confidence 34666665 788999999999999999999999999876655443
No 192
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.87 E-value=4.2 Score=35.40 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=25.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||.++.-. |++- -.|+++...|||+||-++...
T Consensus 1 mKIaiIgAs--G~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGAS--GKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecC--chhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 677776533 3332 368899999999999999865
No 193
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=71.49 E-value=21 Score=30.52 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 011687 18 YPAQGHVTPMHKLASILTSRGFEPIVI 44 (479)
Q Consensus 18 ~~~~gH~~p~l~la~~L~~rGh~V~~~ 44 (479)
.++.|-..-.+.|+..|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456689999999999999999999986
No 194
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.26 E-value=55 Score=31.57 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=79.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc-ccC--CCCCCCeEEEeCCCCCCC-----------
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI-TSS--MDPRSEISCMSIPDGLEK----------- 74 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i-~~~--~~~~~g~~~~~i~~~l~~----------- 74 (479)
++..|+|+...+.|-..-.--||..|.+.|++|.++..+.|+... ++. -....|+.++.-+.+-++
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999886432 221 011146677664433332
Q ss_pred -------------CCCCCHHHHHHHHHH---hchHHHH----------------HH---HHHhhccCCceEEEe---CCC
Q 011687 75 -------------NEPKDFFAIEKVIEN---IMPIHLE----------------RL---INKINEDGRVACVVV---DLL 116 (479)
Q Consensus 75 -------------~~~~~~~~~~~~~~~---~~~~~l~----------------~~---l~~l~~~~~~D~vi~---D~~ 116 (479)
.+.++..+.|..+.. .+..... .. .+.+.+..+.|.+|. |..
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgt 297 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGT 297 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccC
Confidence 033344445554443 2222110 11 122223337888884 433
Q ss_pred c--ccHHHHHHHhCCCcEeEc
Q 011687 117 A--SSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 117 ~--~~~~~~A~~lgiP~v~~~ 135 (479)
. .....+++.+++|...+.
T Consensus 298 AKGG~il~I~~~l~~PI~fiG 318 (340)
T COG0552 298 AKGGIILSIAYELGIPIKFIG 318 (340)
T ss_pred CCcceeeeHHHHhCCCEEEEe
Confidence 3 334688999999999874
No 195
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=70.98 E-value=52 Score=33.90 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred ceEEeeeehHH---hhcccCccceEe--ccchhHHH-HHHHhCc----ceecccCccchhhHHHHHHHHhcceeeeCCCC
Q 011687 338 GKVVPWAPQLK---VLQHNAVGFYLT--HCGWNSTM-EAIQSGK----RLLCYPVAGDQFINCAYIVKMWKIGIRVNGFG 407 (479)
Q Consensus 338 v~~~~~~pq~~---lL~~~~~~~~I~--HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~ 407 (479)
+++.+.+|+.+ ++.-+|+ ++|| .-|+|-+. |.++++. |+|+--+.+ -| +. +.-++.++..+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG----aa---~~-l~~AllVNP~d 434 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG----AA---VE-LKGALLTNPYD 434 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc----ch---hh-cCCCEEECCCC
Confidence 34557788776 4455676 2333 35887654 9999987 555544442 12 44 55578888899
Q ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHcc
Q 011687 408 KRDIEDGLKKLKED--SEMKHRLMNLYMRTMG 437 (479)
Q Consensus 408 ~~~i~~~i~~vl~~--~~~~~~a~~l~~~~~~ 437 (479)
.++++++|.++|+. ++-++|.+++.+.+..
T Consensus 435 ~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~ 466 (487)
T TIGR02398 435 PVRMDETIYVALAMPKAEQQARMREMFDAVNY 466 (487)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999955 4456677777776665
No 196
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=70.85 E-value=7.2 Score=35.73 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=26.5
Q ss_pred CEEEEecCCCCCCHHHH------------HHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPM------------HKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~------------l~la~~L~~rGh~V~~~~~~ 47 (479)
|||++...|+.-.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 45565555555555443 48899999999999999754
No 197
>PRK10867 signal recognition particle protein; Provisional
Probab=69.83 E-value=26 Score=35.39 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEcCCccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSR-GFEPIVITPEFIHNQ 52 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~ 52 (479)
+..|+++..++.|-..-+..||..|+.+ |++|.+++.+.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4567777778889999999999999999 999999999876543
No 198
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=69.81 E-value=24 Score=31.51 Aligned_cols=82 Identities=7% Similarity=0.079 Sum_probs=45.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEcCCc----cccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRG--FEPIVITPEF----IHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rG--h~V~~~~~~~----~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
|||+++..|..+-+. ++.+.+.+.+ ++|.++.+.. ..+...+ .|+.+..++..-..+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~~~~~--------- 64 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHKDFPS--------- 64 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECccccCc---------
Confidence 889999987765544 5566676654 7788765532 1122333 577766544211000
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCC
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLL 116 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~ 116 (479)
.......+.+.++++ ++|++|+-.+
T Consensus 65 ---~~~~~~~~~~~l~~~----~~D~iv~~~~ 89 (200)
T PRK05647 65 ---REAFDAALVEALDAY----QPDLVVLAGF 89 (200)
T ss_pred ---hhHhHHHHHHHHHHh----CcCEEEhHHh
Confidence 011222344456666 8999997543
No 199
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=68.88 E-value=13 Score=38.67 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=46.8
Q ss_pred ehHHhhcccCccceEe---ccc-hhHHHHHHHhCcceecccCcc-chhhHHHHHHHHhcceeeeCC-------CCHHHHH
Q 011687 345 PQLKVLQHNAVGFYLT---HCG-WNSTMEAIQSGKRLLCYPVAG-DQFINCAYIVKMWKIGIRVNG-------FGKRDIE 412 (479)
Q Consensus 345 pq~~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~-DQ~~nA~rv~~~~Gvg~~~~~-------~~~~~i~ 412 (479)
++.+++.-|++ ||. +=| --++.||+++|+|+|+....+ .... -..+.++...|+.+.. .+.++|+
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v-~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM-EEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh-HHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 47778888888 665 344 468999999999999987653 1111 1122221125666642 4567778
Q ss_pred HHHHHHhcC
Q 011687 413 DGLKKLKED 421 (479)
Q Consensus 413 ~~i~~vl~~ 421 (479)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888887743
No 200
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=68.59 E-value=83 Score=27.69 Aligned_cols=56 Identities=23% Similarity=0.225 Sum_probs=36.3
Q ss_pred CEEEEec---CCC-CCCHH-HHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC
Q 011687 11 NKILMVP---YPA-QGHVT-PMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 11 ~~i~~~~---~~~-~gH~~-p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~ 69 (479)
.||.++. .|+ +|=+. -.-.|+..|+++||+|++.|.....+.- .....|++...+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~---~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK---EFEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC---CcccCCeEEEEeC
Confidence 5666665 344 34444 4457888888899999999986432211 2344678887776
No 201
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.31 E-value=81 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=26.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~ 52 (479)
|||++.-=-+. |---+..|+++|.+. |+|+++.+..-+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 46665553222 334467889999888 79999999764333
No 202
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.21 E-value=33 Score=32.25 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=64.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEcCCccccccccCCCCCCCeE-EEeCCCCCCCCCCCCHHHHHHHHH
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRG--FEPIVITPEFIHNQITSSMDPRSEIS-CMSIPDGLEKNEPKDFFAIEKVIE 88 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rG--h~V~~~~~~~~~~~i~~~~~~~~g~~-~~~i~~~l~~~~~~~~~~~~~~~~ 88 (479)
||+++-..+.|++.-+.++.++|+++. .+|++++.+.+.+.++. . +.++ ++.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~-~---p~id~v~~~~~~~---~~~~~-------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL-M---PEVDRVIVLPKKH---GKLGL-------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc-C---CccCEEEEcCCcc---cccch--------
Confidence 588888899999999999999999974 89999999876666654 1 2332 23333110 00011
Q ss_pred HhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 89 NIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
..+..++.+++.. ++|+++--....-...++...+++...
T Consensus 66 ----~~~~~~~~~l~~~-~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ----GARRRLARALRRR-RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ----HHHHHHHHHHhhc-CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1122344444333 899999665454445566677776654
No 203
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=67.75 E-value=22 Score=34.32 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|||+|+..+..+ +...++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEc
Confidence 688988665433 6667888889999876554
No 204
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=67.72 E-value=85 Score=30.53 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCceEE-eeee---hHHhhcccCccceEec--cchhHHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeC--CCC
Q 011687 336 RQGKVV-PWAP---QLKVLQHNAVGFYLTH--CGWNSTMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVN--GFG 407 (479)
Q Consensus 336 ~nv~~~-~~~p---q~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~--~~~ 407 (479)
+++.+. +++| +..+|..|+++-|+|. =|+|++.-.|+.|+|+++--. -+.+-. +.+ .|+-+-.. .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~---np~~~~-l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD---NPFWQD-LKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC---ChHHHH-HHh-CCCeEEeccccCC
Confidence 467665 7888 5669999999767665 479999999999999987532 233333 444 47766553 388
Q ss_pred HHHHHHHHHHHh
Q 011687 408 KRDIEDGLKKLK 419 (479)
Q Consensus 408 ~~~i~~~i~~vl 419 (479)
...|.++=+++.
T Consensus 320 ~~~v~ea~rql~ 331 (360)
T PF07429_consen 320 EALVREAQRQLA 331 (360)
T ss_pred HHHHHHHHHHHh
Confidence 888888877765
No 205
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.70 E-value=18 Score=36.96 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred CEEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 11 NKILMVPYP-AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 11 ~~i~~~~~~-~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
.+|++.... +-|-..-...|++.|+++|++|..+-+.. +.+.. . ++..-.+.+...... . .
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp--d~~d~------~--~~~~~~g~~~~~ld~-~-------~ 65 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP--DYIDP------A--YHTAATGRPSRNLDS-W-------M 65 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC--CcccH------H--HHHHHhCCCcccCCc-e-------e
Confidence 356665444 45899999999999999999999886632 11110 0 000000000000000 0 0
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCC------------cccHHHHHHHhCCCcEeEcchh
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLL------------ASSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 138 (479)
.....+.+.++++. .+.|++|++.. ......+|+.++.|++.+....
T Consensus 66 ~~~~~v~~~~~~~~--~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 66 MGEELVRALFARAA--QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred CCHHHHHHHHHHhc--ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 01233444444432 26899997543 1336799999999999997643
No 206
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.65 E-value=5.8 Score=34.83 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=34.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
+||++...|+.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 677777777766655 7999999999999999999987655554
No 207
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=66.90 E-value=76 Score=27.94 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=60.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC---C-cc-c-cccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP---E-FI-H-NQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~---~-~~-~-~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
--|.+++..+.|-....+.+|-.-.-+|.+|.++-- . .+ . ..+.. -..+++++..++++..+....-...
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~---~~~~v~~~~~~~g~tw~~~~~~~d~- 104 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK---FGLGVEFHGMGEGFTWETQDREADI- 104 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh---hccceeEEecCCceeCCCcCcHHHH-
Confidence 357788889999999999888888888888877642 1 00 0 11111 0145788888876665422111111
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCccc
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASS 119 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~ 119 (479)
..+...+....+.+ .++++|+||.|.+.++
T Consensus 105 ----~aa~~~w~~a~~~l-~~~~ydlviLDEl~~a 134 (198)
T COG2109 105 ----AAAKAGWEHAKEAL-ADGKYDLVILDELNYA 134 (198)
T ss_pred ----HHHHHHHHHHHHHH-hCCCCCEEEEehhhHH
Confidence 33444455444444 3348999999996643
No 208
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=66.79 E-value=6.3 Score=34.71 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=33.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
+||++.-.|+.|=+.-.+.+.+.|.+.|++|+++.++..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 467788788888888888999999999999999998753
No 209
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=66.53 E-value=16 Score=36.97 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.|||+++..|++-| +|++.|.+-++-..+++.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 59999999998887 7899999888544444433
No 210
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=66.35 E-value=12 Score=36.68 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEEcCCcC-CCC----C--hhhHhhhcCCCCceE--EeeeehHH---hhcccCccce
Q 011687 291 SPIGEEKVKTLALTLEALGLPFIWVLGFAWR-EGL----P--DGYLDRVSNSRQGKV--VPWAPQLK---VLQHNAVGFY 358 (479)
Q Consensus 291 ~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~-~~l----~--~~~~~~~~~~~nv~~--~~~~pq~~---lL~~~~~~~~ 358 (479)
..++...+..++++++..+.++...+..+.. ..+ . ..........+++.+ ++|+||.+ +|-.||+ .|
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~-Nf 268 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF-NF 268 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-ce
Confidence 3455566777777777776666555543320 000 0 000000000144444 49999865 9999997 45
Q ss_pred EeccchhHHHHHHHhCccee--cccCc
Q 011687 359 LTHCGWNSTMEAIQSGKRLL--CYPVA 383 (479)
Q Consensus 359 I~HgG~~s~~eal~~GvP~l--~~P~~ 383 (479)
|= |=-|+.-|..+|+|.| ++|..
T Consensus 269 VR--GEDSfVRAqwAgkPFvWhIYpQ~ 293 (374)
T PF10093_consen 269 VR--GEDSFVRAQWAGKPFVWHIYPQE 293 (374)
T ss_pred Ee--cchHHHHHHHhCCCceEecCcCc
Confidence 54 7899999999999986 45543
No 211
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=66.00 E-value=39 Score=34.10 Aligned_cols=41 Identities=27% Similarity=0.493 Sum_probs=36.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
+..|+++..++.|-..-+..||..|.++|++|.+++.+.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45677777889999999999999999999999999998765
No 212
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=65.85 E-value=18 Score=36.47 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCC-CCCCCCCCCHHHHHHHHHHh
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPD-GLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~-~l~~~~~~~~~~~~~~~~~~ 90 (479)
|++++..+.. .+.+++.|.+-|-+|..+++........+ ..... ++. +..-....++..
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~-----~~~~~--l~~~~~~v~~~~~~~~-------- 341 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSA-----PDYEW--LSALGVEVRYRKSLED-------- 341 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhH-----HHHHH--HHhcCCccccCCCHHH--------
Confidence 6656554443 56699999999999999988631111110 00000 000 000000001110
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEc
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 135 (479)
....+++. +||++|... .+..+|+++|||++.+.
T Consensus 342 ----~~~~~~~~----~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 342 ----DIAAVEEY----RPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred ----HHHHHhhc----CCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 11233344 999999884 46779999999999864
No 213
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=65.54 E-value=32 Score=34.09 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVP-YPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~-~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.++|+++. .|..|. .+|..|.++||+|++....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 47899887 676675 6899999999999999863
No 214
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=65.19 E-value=43 Score=33.86 Aligned_cols=91 Identities=9% Similarity=0.071 Sum_probs=53.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc----cccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF----IHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKV 86 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~----~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~ 86 (479)
.|+.++..++. ...+++.|.+-|-+|..+++.. +.+...+ .+. .+..... ...++.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~------~~~--~~~~~v~--~~~dl~----- 345 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKR------WLE--MLGVEVK--YRASLE----- 345 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHH------HHH--hcCCCce--eccCHH-----
Confidence 47777776666 8899999999999999987652 1111111 000 0000000 000010
Q ss_pred HHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEc
Q 011687 87 IENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 135 (479)
+.+ +.+++. +||++|... -+..+|+++|||++.+.
T Consensus 346 ------~~~-~~l~~~----~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 346 ------DDM-EAVLEF----EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred ------HHH-HHHhhC----CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 001 223333 999999884 34668999999999963
No 215
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=64.96 E-value=25 Score=32.68 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.5
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
++|..-|+.|...-..++|..++++|++|.++..+.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 344445788999999999999999999999998865
No 216
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=63.92 E-value=6.3 Score=30.35 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC-CCCCHHHHHHHHHHhchHHHHHHHHHhhcc
Q 011687 27 MHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN-EPKDFFAIEKVIENIMPIHLERLINKINED 105 (479)
Q Consensus 27 ~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (479)
++++|+.|.+.||++ ++++...+.+++ .|+.+..+....... ...+.. .+.+++ +..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-----~Gi~~~~v~~~~~~~~~~~g~~------------~i~~~i---~~~ 59 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-----HGIEVTEVVNKIGEGESPDGRV------------QIMDLI---KNG 59 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-----TT--EEECCEEHSTG-GGTHCH------------HHHHHH---HTT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-----cCCCceeeeeecccCccCCchh------------HHHHHH---HcC
Confidence 478999999999765 344444477777 888865554222111 000000 233333 333
Q ss_pred CCceEEEeCCCccc---------HHHHHHHhCCCcE
Q 011687 106 GRVACVVVDLLASS---------AIGVACRCGVPAA 132 (479)
Q Consensus 106 ~~~D~vi~D~~~~~---------~~~~A~~lgiP~v 132 (479)
+.|+||..+.... -..+|..++||++
T Consensus 60 -~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 60 -KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 8999997764322 1467888888876
No 217
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=63.33 E-value=27 Score=29.98 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=29.4
Q ss_pred EEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 13 ILMVP-YPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 13 i~~~~-~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|++.. -|+-|-..-...||..|+++|++|.++=.+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34444 4777999999999999999999999987653
No 218
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=63.29 E-value=16 Score=32.19 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCc-cccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHH
Q 011687 18 YPAQGHVTPMHKLASILTSR--GFEPIVITPEF-IHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIH 94 (479)
Q Consensus 18 ~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~-~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (479)
..+-|-+....+|+++|.++ |++|.+-++.. -.+.+.+... ..+....+|-+ ....
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D-------------------~~~~ 86 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD-------------------FPWA 86 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-------------------SHHH
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-------------------CHHH
Confidence 45679999999999999987 88887777632 1222322000 23333334521 2233
Q ss_pred HHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEc
Q 011687 95 LERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~ 135 (479)
.+.+++.+ +||++|.-... +.-...|++.|||.+.+.
T Consensus 87 ~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 87 VRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHH------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred HHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 55677888 99999966545 445778889999999973
No 219
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.96 E-value=41 Score=33.66 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc-cC--CCCCCCeEEEeC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT-SS--MDPRSEISCMSI 68 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~-~~--~~~~~g~~~~~i 68 (479)
++..|+++..=+.|-..-+--||..|..+|+.|.+++.+.+++..- +. .....++.|+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 4677888888899999999999999999999999999987754321 10 122256666644
No 220
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.84 E-value=15 Score=29.47 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=32.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|+++...+..-|-.-...|+..|.++||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 68888999999999999999999999999998854
No 221
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.24 E-value=1.7e+02 Score=32.87 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=63.5
Q ss_pred eeeehHH---hhcccCccceEec---cchhHH-HHHHHhCc---ceecccCccchhhHHHHHHHHhc-ceeeeCCCCHHH
Q 011687 342 PWAPQLK---VLQHNAVGFYLTH---CGWNST-MEAIQSGK---RLLCYPVAGDQFINCAYIVKMWK-IGIRVNGFGKRD 410 (479)
Q Consensus 342 ~~~pq~~---lL~~~~~~~~I~H---gG~~s~-~eal~~Gv---P~l~~P~~~DQ~~nA~rv~~~~G-vg~~~~~~~~~~ 410 (479)
..+|+.+ ++..+++ |+.- -|+|.+ .|+++++. -+++++-+ -.-|. . +| -|+.++..+.+.
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~---~-L~~~AllVNP~D~~~ 516 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQ---S-LGAGAILVNPWNITE 516 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHH---H-hCCceEEECCCCHHH
Confidence 3456554 4556676 5543 476654 59999954 22222322 12222 2 43 367777899999
Q ss_pred HHHHHHHHhc-C-HHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhh
Q 011687 411 IEDGLKKLKE-D-SEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLT 460 (479)
Q Consensus 411 i~~~i~~vl~-~-~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 460 (479)
++++|.++|+ + ++-+++.+++.+.... -+...-++.|+..+....
T Consensus 517 vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 517 VAASIAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHHH
Confidence 9999999985 3 4455555666666655 345566677777666554
No 222
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=61.98 E-value=56 Score=33.07 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.6
Q ss_pred CceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+||+||.+.. ...+|+++|+|++.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 8999999973 367899999999975
No 223
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=61.95 E-value=1.4e+02 Score=27.83 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
|||++.-=-+. |---..+|+++|. .+|+|+++.|..-+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCc
Confidence 56666553332 2344677888886 468999999976433
No 224
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=61.63 E-value=22 Score=34.35 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEe--eeeh-HHhhcccCccceEeccchhHHH
Q 011687 292 PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVP--WAPQ-LKVLQHNAVGFYLTHCGWNSTM 368 (479)
Q Consensus 292 ~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~--~~pq-~~lL~~~~~~~~I~HgG~~s~~ 368 (479)
..+.+.+.++++.+.+.++++++..++..+...-+.+.+.. .++.+.+ .+.+ ..++.++++ ||+. -.|.+.
T Consensus 193 ~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~---~~~~l~g~~sL~elaali~~a~l--~I~n-DSGp~H 266 (322)
T PRK10964 193 HWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGF---PYVEVLPKLSLEQVARVLAGAKA--VVSV-DTGLSH 266 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccC---CcceecCCCCHHHHHHHHHhCCE--EEec-CCcHHH
Confidence 37788888888888776777654444322111111221111 2233332 2344 458889888 9986 568899
Q ss_pred HHHHhCcceecc--cCccch----hhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHh
Q 011687 369 EAIQSGKRLLCY--PVAGDQ----FINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 369 eal~~GvP~l~~--P~~~DQ----~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl 419 (479)
=|.+.|+|++++ |..... ..|...+.. ++.-+..++++++.++++++|
T Consensus 267 lA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~~cm~~I~~e~V~~~~~~~l 320 (322)
T PRK10964 267 LTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PGKSMADLSAETVFQKLETLI 320 (322)
T ss_pred HHHHhCCCEEEEECCCCcccccCCCCCceeecC---CCcccccCCHHHHHHHHHHHh
Confidence 999999999887 332111 011111111 011233488999988888876
No 225
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.34 E-value=41 Score=34.01 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~ 52 (479)
+..++++..++.|-..-+..||..|. ++|.+|.+++.+.++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 45677777788999999999999997 58999999999876543
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.34 E-value=50 Score=32.97 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=36.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
+.+|+|+..+|.|-..-...||..|..+|++|.+++.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 46788888889999999999999999999999999997654
No 227
>PRK09620 hypothetical protein; Provisional
Probab=61.26 E-value=10 Score=34.73 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCEEEEecCCCCCCHHHH------------HHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPM------------HKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~------------l~la~~L~~rGh~V~~~~~~~ 48 (479)
.++|++...|+.-.+.|. ..||++|.++|++|+++....
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467777766655554443 589999999999999998653
No 228
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=61.23 E-value=33 Score=32.21 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=58.3
Q ss_pred CcEEEEEeCCccc---cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCce-EEee--eeh-HHhhc
Q 011687 279 NSVIYISFGSWVS---PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGK-VVPW--APQ-LKVLQ 351 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~-~~~~--~pq-~~lL~ 351 (479)
++.|.+..|+ .. ..+.+.+.++++.+.+.++++++..++.. ...-+.+.+..+ +.++. +.+- +.+ ..+++
T Consensus 121 ~~~i~i~~~~-~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e-~~~~~~i~~~~~-~~~~~~~~~~~~l~e~~~li~ 197 (279)
T cd03789 121 KPVVVLPPGA-SGPAKRWPAERFAALADRLLARGARVVLTGGPAE-RELAEEIAAALG-GPRVVNLAGKTSLRELAALLA 197 (279)
T ss_pred CCEEEECCCC-CCccccCCHHHHHHHHHHHHHCCCEEEEEechhh-HHHHHHHHHhcC-CCccccCcCCCCHHHHHHHHH
Confidence 5577777776 32 46778999999999877888776544321 111112222110 01222 2221 222 55888
Q ss_pred ccCccceEeccchhHHHHHHHhCcceecc
Q 011687 352 HNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 352 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
++++ +|+.-. |.+.-|.+.|+|++++
T Consensus 198 ~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 198 RADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred hCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 8888 999753 6777778999999887
No 229
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=61.14 E-value=11 Score=33.02 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=23.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCe--EEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFE--PIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~--V~~~~~ 46 (479)
|||+|+..++. ..+..+.++|.+++++ +.++.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 78999876665 4566778899999997 444443
No 230
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=61.09 E-value=47 Score=26.49 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=55.1
Q ss_pred EecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHH
Q 011687 15 MVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIH 94 (479)
Q Consensus 15 ~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 94 (479)
+++.... +-.-+..+|+.|.+.|++|. +|.. ..+.+.+ .|+.+..+.......... ...
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~-aT~g-Ta~~L~~-----~gi~~~~v~~~~~~~~~~-------------~~~ 62 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY-ATEG-TADFLLE-----NGIPVTPVAWPSEEPQND-------------KPS 62 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE-EccH-HHHHHHH-----cCCCceEeeeccCCCCCC-------------chh
Confidence 4444443 45667899999999999994 5553 3355555 676555443110000000 022
Q ss_pred HHHHHHHhhccCCceEEEeCCC---------cccHHHHHHHhCCCcEe
Q 011687 95 LERLINKINEDGRVACVVVDLL---------ASSAIGVACRCGVPAAG 133 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~---------~~~~~~~A~~lgiP~v~ 133 (479)
+.++++ . .++|+||..+. .+.....|-.+|||++.
T Consensus 63 i~~~i~---~-~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 63 LRELLA---E-GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHHHH---c-CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 333443 2 38999998542 24456789999999975
No 231
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=61.02 E-value=1.1e+02 Score=33.10 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=61.1
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHH-H
Q 011687 12 KILMVPYP-AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIE-N 89 (479)
Q Consensus 12 ~i~~~~~~-~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~-~ 89 (479)
.|++.+.. ..|-..-++.|++.|.++|++|-++=|-. .+ | +. ......+. .
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~------------~~------p--~~-------~~~~~~~~~~ 56 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIA------------QP------P--LT-------MSEVEALLAS 56 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcc------------cC------C--CC-------HHHHHHHHhc
Confidence 46666554 45999999999999999999999986522 11 1 00 01111111 0
Q ss_pred -hchHHHHHHHHHhhc-cCCceEEEeCCCcc---------cHHHHHHHhCCCcEeEcchh
Q 011687 90 -IMPIHLERLINKINE-DGRVACVVVDLLAS---------SAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 90 -~~~~~l~~~l~~l~~-~~~~D~vi~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 138 (479)
.....++++++.+.. ..++|+||.|...+ ....+|+.++.|++.+....
T Consensus 57 ~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 57 GQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred cCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 112233334444311 23799999876542 23678999999999997654
No 232
>PRK06988 putative formyltransferase; Provisional
Probab=60.77 E-value=39 Score=32.59 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=23.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 7999986554 3455667778889998877664
No 233
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=60.74 E-value=35 Score=27.07 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHh
Q 011687 23 HVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKI 102 (479)
Q Consensus 23 H~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 102 (479)
+=.-++.+|+.|.+.|+++ ++|. ...+.+.+ .|+.+..+...-. . ....+.+++
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~-gTa~~L~~-----~Gi~~~~v~~~~~-~---------------g~~~i~~~i--- 63 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATG-GTSRVLAD-----AGIPVRAVSKRHE-D---------------GEPTVDAAI--- 63 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECc-HHHHHHHH-----cCCceEEEEecCC-C---------------CCcHHHHHH---
Confidence 4456789999999999998 4555 34466766 6777655432111 0 122233333
Q ss_pred hccCCceEEEeCCC----------cccHHHHHHHhCCCcEeE
Q 011687 103 NEDGRVACVVVDLL----------ASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 103 ~~~~~~D~vi~D~~----------~~~~~~~A~~lgiP~v~~ 134 (479)
++..++|+||.-+. .+....+|-.++||++.-
T Consensus 64 ~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 64 AEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred hCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 33038999997431 122346788899999984
No 234
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=60.58 E-value=57 Score=33.11 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.8
Q ss_pred CceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+||++|.... ...+|+++|||++.+
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 8999999863 578999999999976
No 235
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=60.55 E-value=51 Score=31.89 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=55.0
Q ss_pred CEEEEecCCCCC-----CHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHH
Q 011687 11 NKILMVPYPAQG-----HVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 11 ~~i~~~~~~~~g-----H~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~ 85 (479)
..|++.|..+.| ...-+..|++.|.++|++|.+++++.-++..++ .....+-..+.+.
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~-i~~~~~~~~~~l~---------------- 237 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNE-IEALLPGELRNLA---------------- 237 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHH-HHHhCCcccccCC----------------
Confidence 456666644322 234677999999988999999888653222222 0000000000010
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
....+.++..-+. +.|++|+. ..+.+++|..+|+|.|.+
T Consensus 238 -----g~~sL~el~ali~---~a~l~I~~--DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 238 -----GETSLDEAVDLIA---LAKAVVTN--DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred -----CCCCHHHHHHHHH---hCCEEEee--CCHHHHHHHHcCCCEEEE
Confidence 1112333333332 68999976 346789999999999987
No 236
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.84 E-value=9.9 Score=34.01 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i 53 (479)
.+||++.-.|+.+- +=...+.+.|.+.||+|+++.++...+.+
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 46777776665554 68889999999999999999998755544
No 237
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.63 E-value=53 Score=31.30 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=37.4
Q ss_pred ccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 352 HNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 352 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
.+++ +|+-||-||+++|+.. ++|++.+-.. .+|. +...+.+++.++|++++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF-L~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF-ITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc-cccCCHHHHHHHHHHHHcC
Confidence 4566 9999999999999874 6677765532 1222 2246778888888888743
No 238
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=59.45 E-value=51 Score=33.44 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
.+|++++..+ .....+++.|.+.|-+|..+......+.... ++...- ...+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~------------~~~~~~--~~~D~--------- 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK------------LPVETV--VIGDL--------- 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh------------CCcCcE--EeCCH---------
Confidence 4677776533 4678899999999999988877543222211 010000 00011
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
..+++.+++. ++|++|.+.. +..+|+++|||++.+
T Consensus 363 ---~~l~~~i~~~----~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ---EDLEDLACAA----GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred ---HHHHHHHhhc----CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 1234445444 8999998863 477999999999985
No 239
>PLN02470 acetolactate synthase
Probab=59.18 E-value=48 Score=35.13 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeee-hHH-------hhcccCccceEeccc------
Q 011687 298 VKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP-QLK-------VLQHNAVGFYLTHCG------ 363 (479)
Q Consensus 298 ~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~p-q~~-------lL~~~~~~~~I~HgG------ 363 (479)
.+.|++.|++.|.+.++-+.++....+-+.+.+ .++++.+.--- +.. -.....+++++.|.|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~----~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 91 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGASMEIHQALTR----SNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNL 91 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhc----cCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 567888888888888888776542222222210 12344442211 111 111123455888888
Q ss_pred hhHHHHHHHhCcceeccc
Q 011687 364 WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 364 ~~s~~eal~~GvP~l~~P 381 (479)
.+.+.+|...++|+|++.
T Consensus 92 l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 92 VTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHhcCCcEEEEe
Confidence 467889999999999995
No 240
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=58.89 E-value=18 Score=31.08 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=22.5
Q ss_pred ccCccceEeccch------hHHHHHHHhCcceecccC
Q 011687 352 HNAVGFYLTHCGW------NSTMEAIQSGKRLLCYPV 382 (479)
Q Consensus 352 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 382 (479)
.+.+ +++|+|- +.+.||...++|+|++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3444 8888884 566799999999999954
No 241
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=58.71 E-value=92 Score=30.44 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHHH-HhC-CCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHH---hhcccCccceEeccc---
Q 011687 292 PIGEEKVKTLALTL-EAL-GLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLK---VLQHNAVGFYLTHCG--- 363 (479)
Q Consensus 292 ~~~~~~~~~l~~al-~~~-~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~~~I~HgG--- 363 (479)
+...|.+-.++--+ .+. +.+|+..=.+.. ...-++..++...++++.+.+-+|+.. +|..-++ |++-.=
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEa 283 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEA 283 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHH
Confidence 34456655544433 333 345533322221 112244555555568999999999754 7878888 887544
Q ss_pred -hhHHHHHHHhCcceecc
Q 011687 364 -WNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 364 -~~s~~eal~~GvP~l~~ 380 (479)
--++.||..+|.|++..
T Consensus 284 fc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 284 FCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 34678999999999864
No 242
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=58.36 E-value=10 Score=33.14 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=30.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
||++...|+.|= +-...+.+.|.++|++|.++.++...+.+.
T Consensus 2 ~I~lgvtGs~~a-~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIAA-YKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHHH-HHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 566666565544 455699999999999999999986544443
No 243
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=58.23 E-value=55 Score=29.51 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=27.0
Q ss_pred EEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 13 ILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 13 i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|++... .+.|-..-...|++.|+++|++|.++=+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 444444 4569999999999999999999988653
No 244
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=57.70 E-value=16 Score=32.46 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCcccc-ccccCCCCCCCeEE---EeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHH
Q 011687 23 HVTPMHKLASILTSRGFEPIVITPEFIHN-QITSSMDPRSEISC---MSIPDGLEKNEPKDFFAIEKVIENIMPIHLERL 98 (479)
Q Consensus 23 H~~p~l~la~~L~~rGh~V~~~~~~~~~~-~i~~~~~~~~g~~~---~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (479)
++.-...+.+.+.++|-+|.|+++..... .++. .+...+..+ ..++..+.. ..........+...-...++..
T Consensus 41 ~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~-~a~~~~~~~i~~rw~~G~LTN--~~~~~~~~~~~~~~~~~~~~k~ 117 (193)
T cd01425 41 KLRLALNFIANIAAKGGKILFVGTKPQAQRAVKK-FAERTGSFYVNGRWLGGTLTN--WKTIRKSIKRLKKLEKEKLEKN 117 (193)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCCeeecCeecCCcCCC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556677777899999999864322 2222 111122222 223332332 1111111111211111222222
Q ss_pred HHHhh-ccCCceEEE-eCCCc-ccHHHHHHHhCCCcEeEcchh
Q 011687 99 INKIN-EDGRVACVV-VDLLA-SSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 99 l~~l~-~~~~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 138 (479)
+..++ ....||+|| .|+.. ..+..=|.++|||.|.+..+.
T Consensus 118 ~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 118 LGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 22221 123799988 45433 567788899999999997664
No 245
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=57.59 E-value=1.1e+02 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|.++..++.|-...+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56777788899999999999999999999998865
No 246
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=57.55 E-value=19 Score=33.08 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=52.0
Q ss_pred CCCcEEEEEeCCccc---cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCC--CCce-EEee--eeh-H
Q 011687 277 KPNSVIYISFGSWVS---PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNS--RQGK-VVPW--APQ-L 347 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~--~nv~-~~~~--~pq-~ 347 (479)
.+++.|.+..|+ .. ..+.+.+.++++.+.+.++++++..++... .....+....+ .++. +.+- +.+ .
T Consensus 103 ~~~~~i~i~~~a-~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 103 KDKPYIGINPGA-SWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---EKEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TTSSEEEEE----SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---HHHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred ccCCeEEEeecC-CCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---HHHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 355677777777 33 367788999999998877665444433210 01122222200 1222 2221 233 4
Q ss_pred HhhcccCccceEeccchhHHHHHHHhCcceecc
Q 011687 348 KVLQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 348 ~lL~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
.++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 58888887 8885 568889999999999988
No 247
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=57.32 E-value=1.2e+02 Score=25.66 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=82.7
Q ss_pred EEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEe
Q 011687 281 VIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLT 360 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~ 360 (479)
.|-|-+|| ..+.+..+...+.|+++++.+...+-+.++ -|+.+.+-. .-.....++.||.
T Consensus 4 ~V~IIMGS---~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR--TPe~m~~ya---------------~~a~~~g~~viIA 63 (162)
T COG0041 4 KVGIIMGS---KSDWDTMKKAAEILEEFGVPYEVRVVSAHR--TPEKMFEYA---------------EEAEERGVKVIIA 63 (162)
T ss_pred eEEEEecC---cchHHHHHHHHHHHHHcCCCeEEEEEeccC--CHHHHHHHH---------------HHHHHCCCeEEEe
Confidence 57788898 556778888999999998887555544332 233321111 0111233444666
Q ss_pred ccchhH---HHHHHHhCcceecccCcc---chhhHHHHHHHHhcceeeeC-----C-CCHHHHHHHHHHHhcCHHHHHHH
Q 011687 361 HCGWNS---TMEAIQSGKRLLCYPVAG---DQFINCAYIVKMWKIGIRVN-----G-FGKRDIEDGLKKLKEDSEMKHRL 428 (479)
Q Consensus 361 HgG~~s---~~eal~~GvP~l~~P~~~---DQ~~nA~rv~~~~Gvg~~~~-----~-~~~~~i~~~i~~vl~~~~~~~~a 428 (479)
-.|.-. =+-|...=+|+|.+|... +--+--.-+++ +--|+.+. + .|..-++.+|-.+ .|+++++++
T Consensus 64 gAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa~-~d~~l~~kl 141 (162)
T COG0041 64 GAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILAI-KDPELAEKL 141 (162)
T ss_pred cCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHcC-CCHHHHHHH
Confidence 554211 122445579999999874 33344445677 66676553 2 5555555555333 689999999
Q ss_pred HHHHHHHccc
Q 011687 429 MNLYMRTMGD 438 (479)
Q Consensus 429 ~~l~~~~~~~ 438 (479)
.++++..++.
T Consensus 142 ~~~r~~~~~~ 151 (162)
T COG0041 142 AEFREAQTEE 151 (162)
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 248
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=57.27 E-value=11 Score=33.15 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=34.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCccccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~i~ 54 (479)
+||++...|+.| .+=...+++.|.+ .||+|.++.++...+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 577777777766 6668999999998 599999999987655554
No 249
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=57.22 E-value=26 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=20.6
Q ss_pred cceEeccc------hhHHHHHHHhCcceecccC
Q 011687 356 GFYLTHCG------WNSTMEAIQSGKRLLCYPV 382 (479)
Q Consensus 356 ~~~I~HgG------~~s~~eal~~GvP~l~~P~ 382 (479)
+.++.+.| .+.+.+|...++|+|++.-
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33777766 4566789999999999963
No 250
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=57.02 E-value=56 Score=25.71 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 011687 22 GHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINK 101 (479)
Q Consensus 22 gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 101 (479)
++-.-++++++.|.+.|+++. +|. ...+.+.+ .|+.+..+..... ....+.+++
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-aT~-gT~~~l~~-----~gi~~~~v~~~~~-----------------~~~~i~~~i-- 63 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-ATE-GTAKYLQE-----AGIPVEVVNKVSE-----------------GRPNIVDLI-- 63 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-Ech-HHHHHHHH-----cCCeEEEEeecCC-----------------CchhHHHHH--
Confidence 355678899999999999994 454 34466766 6777654432110 112233333
Q ss_pred hhccCCceEEEeCCC-------cccHHHHHHHhCCCcEeE
Q 011687 102 INEDGRVACVVVDLL-------ASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 102 l~~~~~~D~vi~D~~-------~~~~~~~A~~lgiP~v~~ 134 (479)
+.. ++|+||..+. .+.....|-.+|||++.-
T Consensus 64 -~~~-~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 64 -KNG-EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred -HcC-CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 332 8999997432 244567799999999963
No 251
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=56.27 E-value=88 Score=27.75 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=59.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEE--EeCCCCCCCCCCCCHHHHHHHHHHh
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISC--MSIPDGLEKNEPKDFFAIEKVIENI 90 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~--~~i~~~l~~~~~~~~~~~~~~~~~~ 90 (479)
.+++..-..|-..-++.-++....+|-+|.++++...-........+..|.+. +.++
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~--------------------- 65 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIP--------------------- 65 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecC---------------------
Confidence 34444446699999999999999999999999996432212111111123221 1111
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCccc-------HHHHHHHhCCCcEeE
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLASS-------AIGVACRCGVPAAGF 134 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~~~-------~~~~A~~lgiP~v~~ 134 (479)
-...+.+.+.........|+|+.|...+. ...+|+.+|||++.+
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 66 SDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred ChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 00112222222222213789999985544 347889999999995
No 252
>PRK14098 glycogen synthase; Provisional
Probab=56.13 E-value=19 Score=37.13 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=30.6
Q ss_pred CCEEEEecC---C---CCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPY---P---AQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~---~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+|||+|++. | +.|=-.-+-+|.++|+++||+|.+++|..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 489999873 1 33555567789999999999999999943
No 253
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=55.57 E-value=39 Score=26.37 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=47.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCC-CeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRG-FEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rG-h~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
|||+++-.|++-| +||..|.+-- .+-.|+.+.+ ..+.. .+ +.+.+..
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN--~G~~~-----~~-~~~~~~~------------------- 48 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGN--PGTAE-----LG-KNVPIDI------------------- 48 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE----TTGGG-----TS-EEE-S-T-------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCC--HHHHh-----hc-eecCCCC-------------------
Confidence 7999999998888 6899997542 3333333433 23332 11 2222210
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCCcc---cHHHHHHHhCCCcEe
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLLAS---SAIGVACRCGVPAAG 133 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~~~---~~~~~A~~lgiP~v~ 133 (479)
.-...+.++.++. ++|+||..+-.+ +..+.-+..|||++.
T Consensus 49 ~d~~~l~~~a~~~----~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 49 TDPEELADFAKEN----KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp T-HHHHHHHHHHT----TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCHHHHHHHHHHc----CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 0111122233333 999999988443 345667788999876
No 254
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=55.53 E-value=8.6 Score=39.13 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHH---HHHHHHHHHhcCHHHHHHHHHHH
Q 011687 366 STMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKR---DIEDGLKKLKEDSEMKHRLMNLY 432 (479)
Q Consensus 366 s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~---~i~~~i~~vl~~~~~~~~a~~l~ 432 (479)
++.||+++|+|+++.=.. .=+.-+++ .--|...+. +++ .+++++.++..|++++.++.+=+
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~~-~~tG~l~dp-~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVVH-GVTGLLIDP-GQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEEc-CCcceeeCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 678999999999987544 34444555 455666665 455 69999999999999877765433
No 255
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=55.00 E-value=56 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=37.2
Q ss_pred ccCccceEeccc------hhHHHHHHHhCcceecccCcc---------ch-hhHHHHHHHHhcceeeeCC-CCHHHHHHH
Q 011687 352 HNAVGFYLTHCG------WNSTMEAIQSGKRLLCYPVAG---------DQ-FINCAYIVKMWKIGIRVNG-FGKRDIEDG 414 (479)
Q Consensus 352 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P~~~---------DQ-~~nA~rv~~~~Gvg~~~~~-~~~~~i~~~ 414 (479)
.+.+ ++.|.| .+++.+|...++|+|++.-.. -| ..+...+-+ .+++.... .+++++...
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~--~~~k~~~~v~~~~~~~~~ 139 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFR--PVTKWSYRVTSPDDLPEA 139 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHG--GGSSEEEEECSGGGHHHH
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhhcchhc--cccchhcccCCHHHHHHH
Confidence 3444 888876 467788999999999986322 12 333344433 33333322 566666666
Q ss_pred HHHHh
Q 011687 415 LKKLK 419 (479)
Q Consensus 415 i~~vl 419 (479)
+++.+
T Consensus 140 ~~~A~ 144 (172)
T PF02776_consen 140 LDRAF 144 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 256
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=54.93 E-value=43 Score=32.79 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCccc---cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCC-CCChhhHhhhcCCCC-ceEEee--eeh-HHh
Q 011687 278 PNSVIYISFGSWVS---PIGEEKVKTLALTLEALGLPFIWVLGFAWRE-GLPDGYLDRVSNSRQ-GKVVPW--APQ-LKV 349 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~-~l~~~~~~~~~~~~n-v~~~~~--~pq-~~l 349 (479)
+++.|.+.-|+ .. ..+.+.+.++++.+.+.++++++.-+++..+ ..-+.+.+... ..+ +.+.+- +.+ ..+
T Consensus 182 ~~~~i~i~pga-~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~-~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 182 TQNYVVIQPTA-RQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQ-TPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCCeEEEecCC-CccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcC-CCccccccCCCCHHHHHHH
Confidence 35678888887 42 3678889999999987788776554432111 00012221111 012 222232 334 458
Q ss_pred hcccCccceEeccchhHHHHHHHhCcceecc
Q 011687 350 LQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 350 L~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
+.++++ ||+. -.|-+.=|.+.|+|+|++
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 888888 9986 568888899999999877
No 257
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=54.71 E-value=68 Score=28.35 Aligned_cols=82 Identities=6% Similarity=0.088 Sum_probs=44.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCC--eEEEEcCCc--c--ccccccCCCCCCCeEEEeCCC-CCCCCCCCCHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGF--EPIVITPEF--I--HNQITSSMDPRSEISCMSIPD-GLEKNEPKDFFAI 83 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh--~V~~~~~~~--~--~~~i~~~~~~~~g~~~~~i~~-~l~~~~~~~~~~~ 83 (479)
|||+++..|..+-.. ++.+.+.+.++ +|.++.+.. . .+.+.+ .|+.+..++. .+..
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~~~~~~--------- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSLKDFPS--------- 63 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECccccCc---------
Confidence 578888877666554 56666766655 677655442 1 122333 5776665432 1110
Q ss_pred HHHHHHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 84 EKVIENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
.......+.+.++++ ++|++|+-.+.
T Consensus 64 ----~~~~~~~~~~~l~~~----~~D~iv~~~~~ 89 (190)
T TIGR00639 64 ----REAFDQAIIEELRAH----EVDLVVLAGFM 89 (190)
T ss_pred ----hhhhhHHHHHHHHhc----CCCEEEEeCcc
Confidence 011122344455555 99999976543
No 258
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.66 E-value=12 Score=32.58 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=36.9
Q ss_pred cCccceEeccchhHHHHHHHhCcceecccCcc-----------------------chhhHHHHHHHHhcceeeeCC-CCH
Q 011687 353 NAVGFYLTHCGWNSTMEAIQSGKRLLCYPVAG-----------------------DQFINCAYIVKMWKIGIRVNG-FGK 408 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~-----------------------DQ~~nA~rv~~~~Gvg~~~~~-~~~ 408 (479)
..+..+|++||......... ++|++-+|... +.......+.+.+|+-+..-. -+.
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~ 111 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSE 111 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSH
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCH
Confidence 33444999999999988877 99999999743 223334444443444333322 556
Q ss_pred HHHHHHHHHHh
Q 011687 409 RDIEDGLKKLK 419 (479)
Q Consensus 409 ~~i~~~i~~vl 419 (479)
+++...+.++.
T Consensus 112 ~e~~~~i~~~~ 122 (176)
T PF06506_consen 112 EEIEAAIKQAK 122 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777776664
No 259
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=54.49 E-value=1.1e+02 Score=27.97 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=48.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR-GFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIEN 89 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 89 (479)
.||.|+=.|-.|--.-.--+-.+.+.| +.+|.++++.. ++.. +
T Consensus 3 vKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGa---Km~p---------------------------------e 46 (277)
T PRK00994 3 VKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGA---KMGP---------------------------------E 46 (277)
T ss_pred EEEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCC---CCCH---------------------------------H
Confidence 577777766665433333334555555 67777777652 2211 1
Q ss_pred hchHHHHHHHHHhhccCCceEEEeC-CCc-ccHHHHHH----HhCCCcEeEcch
Q 011687 90 IMPIHLERLINKINEDGRVACVVVD-LLA-SSAIGVAC----RCGVPAAGFWPA 137 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D-~~~-~~~~~~A~----~lgiP~v~~~~~ 137 (479)
........++++| +||++|+- +.. ..|...|+ ..|||+|+++..
T Consensus 47 ~~~~~~~~~~~~~----~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 47 EVEEVVKKMLEEW----KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHHHHhh----CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCC
Confidence 1223344566777 99998843 322 33444444 448999998543
No 260
>PRK12342 hypothetical protein; Provisional
Probab=54.07 E-value=23 Score=32.88 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCceEEEeCCCc------ccHHHHHHHhCCCcEeEcc
Q 011687 95 LERLINKINEDGRVACVVVDLLA------SSAIGVACRCGVPAAGFWP 136 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~------~~~~~~A~~lgiP~v~~~~ 136 (479)
|...++++ +||+|++...+ --+..+|+.||+|++.+..
T Consensus 101 La~~i~~~----~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 101 LAAAIEKI----GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHh----CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 44556655 79999976544 2278999999999999643
No 261
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=53.92 E-value=1e+02 Score=28.48 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.2
Q ss_pred CcccCCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 1 MVNMMCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 1 ~~~~~~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|.|.|.. ..|+++++.++ |.+ -..+++.|+++|++|.++...
T Consensus 1 ~~~~~~l--~~k~vlItG~s-~gI--G~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 1 MQDWLNL--QGKIIIVTGGS-SGI--GLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CcccccC--CCCEEEEeCCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5555543 23555666443 332 367899999999999988654
No 262
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.80 E-value=98 Score=30.81 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
...++++...+.|-..-+..||..+.++|++|.+++.+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 445566666677999999999999999999999999987643
No 263
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=53.75 E-value=46 Score=33.98 Aligned_cols=106 Identities=9% Similarity=0.087 Sum_probs=60.0
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhc
Q 011687 13 ILMVPYP-AQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIM 91 (479)
Q Consensus 13 i~~~~~~-~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 91 (479)
|++.... +-|-..-+..|++.|+++|++|..+=+.. +.+. +.+ +..-.+.+...... ++ .-
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D------~~~--~~~~~g~~~~~ld~---~~-----~~ 63 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYID------PMF--HTQATGRPSRNLDS---FF-----MS 63 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCC------HHH--HHHHhCCchhhCCc---cc-----CC
Confidence 4444343 45889999999999999999999986531 1111 010 00000111000000 00 11
Q ss_pred hHHHHHHHHHhhccCCceEEEeCCCc------------ccHHHHHHHhCCCcEeEcchh
Q 011687 92 PIHLERLINKINEDGRVACVVVDLLA------------SSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 92 ~~~l~~~l~~l~~~~~~D~vi~D~~~------------~~~~~~A~~lgiP~v~~~~~~ 138 (479)
...+.+.+.++. .+.|++|++... .....+|+.++.|+|.+....
T Consensus 64 ~~~i~~~~~~~~--~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 64 EAQIQECFHRHS--KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred HHHHHHHHHHhc--ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 223334444432 268999976541 236799999999999998754
No 264
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=53.59 E-value=21 Score=34.42 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEe
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMS 67 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~ 67 (479)
..|+|+++-.|+.|= .+|..|++.||+|++++... .+.+.. .|+....
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~-----~g~~~~~ 51 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRE-----NGLQVDS 51 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHh-----CCeEEEe
Confidence 358999998777664 46778999999999998754 244444 5666543
No 265
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=53.34 E-value=24 Score=33.61 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=33.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|||+++.=|+-|-..-+..||..|+++|++|.++=-+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 6788898899999999999999999999999988664
No 266
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=52.94 E-value=1.4e+02 Score=25.46 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
.+++...++.|-......++..|.++|.+|.++..+.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 356777789999999999999999999999999987543
No 267
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=52.74 E-value=23 Score=33.14 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|+|.+..=|+-|-..-+..||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6788887688899999999999999999999988543
No 268
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=52.69 E-value=27 Score=36.47 Aligned_cols=89 Identities=10% Similarity=0.137 Sum_probs=51.0
Q ss_pred eehHHhhcccCccceEeccc-h-hHHHHHHHhCcceecccCcc-----chhhHHHHHHHHhcceeeeCC-CCHHHHHHHH
Q 011687 344 APQLKVLQHNAVGFYLTHCG-W-NSTMEAIQSGKRLLCYPVAG-----DQFINCAYIVKMWKIGIRVNG-FGKRDIEDGL 415 (479)
Q Consensus 344 ~pq~~lL~~~~~~~~I~HgG-~-~s~~eal~~GvP~l~~P~~~-----DQ~~nA~rv~~~~Gvg~~~~~-~~~~~i~~~i 415 (479)
+++.+++.-|+++.|-+-=- | -|-+||++.|||.|..-..+ .+... . -.. .||-+.=+. .+.++..+.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~-~~~-~GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-D-PEE-YGVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--H-HGG-GTEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-c-CcC-CcEEEEeCCCCCHHHHHHHH
Confidence 56889999999977777322 1 58899999999999876542 11111 1 123 355544443 6677777777
Q ss_pred HHHh---------cCHHHHHHHHHHHHHH
Q 011687 416 KKLK---------EDSEMKHRLMNLYMRT 435 (479)
Q Consensus 416 ~~vl---------~~~~~~~~a~~l~~~~ 435 (479)
.+.| +-...|.+++++++++
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 6665 1133667777776655
No 269
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=52.58 E-value=23 Score=33.11 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=31.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|+|.++.=||-|-..-+..||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 678888667889999999999999999999998844
No 270
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.31 E-value=77 Score=28.99 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhccCCceEEEeCCCccc---HHHHHHHhCCCcEe
Q 011687 93 IHLERLINKINEDGRVACVVVDLLASS---AIGVACRCGVPAAG 133 (479)
Q Consensus 93 ~~l~~~l~~l~~~~~~D~vi~D~~~~~---~~~~A~~lgiP~v~ 133 (479)
..++.+++.|. +-++.+.|..+.+ +..+|...|||++.
T Consensus 138 ~aM~~~m~~Lk---~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 138 DAMEKLMEALK---ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH---HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 34455666663 6789999987744 56889999999997
No 271
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.15 E-value=25 Score=28.48 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|+++.+.++-.|..-..-++.-|...|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 578889999999999999999999999999999984
No 272
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.33 E-value=89 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=20.9
Q ss_pred ceEeccc------hhHHHHHHHhCcceecccC
Q 011687 357 FYLTHCG------WNSTMEAIQSGKRLLCYPV 382 (479)
Q Consensus 357 ~~I~HgG------~~s~~eal~~GvP~l~~P~ 382 (479)
+++.|+| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3888866 4677889999999999953
No 273
>PRK08760 replicative DNA helicase; Provisional
Probab=51.23 E-value=25 Score=36.10 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFIH 50 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~~ 50 (479)
--+++...|+.|-..-++.+|...+. .|+.|.|++-+-..
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 45666778999999999999998874 59999999987543
No 274
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.92 E-value=77 Score=30.26 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=38.6
Q ss_pred ccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 352 HNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 352 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
.+++ +|.=||-||+++++.. ++|++.+... .+| -+...+.+++.++|++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG-Fl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG-FLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc-ccccCCHHHHHHHHHHHHcC
Confidence 4556 9999999999999753 6787776653 133 22347789999999999843
No 275
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.62 E-value=1.3e+02 Score=28.37 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=34.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
..+++|+..++.|-..-+..|+..+..+|+.|.+++.+.+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3688888888889988889999999989999999998754
No 276
>PRK05595 replicative DNA helicase; Provisional
Probab=50.46 E-value=30 Score=35.19 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=31.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCcc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFI 49 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~ 49 (479)
--+++...|+.|-..-++.+|..++ +.|+.|.|++.+-.
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3456666789999999999998776 57999999998754
No 277
>PRK08506 replicative DNA helicase; Provisional
Probab=49.99 E-value=36 Score=35.01 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=34.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~ 52 (479)
--+++...|+.|-..-++.+|...++.|+.|.|++.+-....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q 234 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ 234 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence 456666778999999999999999889999999998754333
No 278
>PRK11519 tyrosine kinase; Provisional
Probab=49.98 E-value=1.4e+02 Score=32.58 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=30.9
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVP--YPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~--~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.|+++++ .|+-|-..-...||..|+..|++|.++-.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 44555555 467799999999999999999999999654
No 279
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.92 E-value=12 Score=31.83 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=25.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
||.++..|..|+ ++|..|+.+||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566666665554 78999999999999999974
No 280
>PRK04940 hypothetical protein; Provisional
Probab=49.64 E-value=33 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=26.6
Q ss_pred CceEEEeCCCc-ccHHHHHHHhCCCcEeEcch
Q 011687 107 RVACVVVDLLA-SSAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 107 ~~D~vi~D~~~-~~~~~~A~~lgiP~v~~~~~ 137 (479)
+++++|-..+. ++|..+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788887776 88999999999999998765
No 281
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=49.61 E-value=37 Score=29.20 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEcC
Q 011687 23 HVTPMHKLASILTS-RGFEPIVITP 46 (479)
Q Consensus 23 H~~p~l~la~~L~~-rGh~V~~~~~ 46 (479)
|.....+|+++|.+ +|.++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 5655554433
No 282
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=49.41 E-value=61 Score=31.51 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=57.8
Q ss_pred CCEEEEecCCCC-----CCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 10 KNKILMVPYPAQ-----GHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 10 ~~~i~~~~~~~~-----gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
+..|+|.|..+. --..-+..|++.|.++|++|.++.++.-.+.+++......+. .. +.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~-~~-l~--------------- 237 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNA-VI-LA--------------- 237 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCc-cc-cC---------------
Confidence 357777776233 234568899999999999999999863323322200000000 00 11
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEc
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 135 (479)
....+.++..-+. ..|++|+. ..+..++|..+|.|+|.+-
T Consensus 238 ------~k~sL~e~~~li~---~a~l~I~~--DSg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 238 ------GKTSLEELAALIA---GADLVIGN--DSGPMHLAAALGTPTIALY 277 (334)
T ss_pred ------CCCCHHHHHHHHh---cCCEEEcc--CChHHHHHHHcCCCEEEEE
Confidence 1122333332222 68888865 3467899999999999983
No 283
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=49.07 E-value=21 Score=35.78 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
+.+||++...|+. ..+=...+.+.|.+.|++|.++.++...+.+.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 4577887777766 44577899999999999999999987555553
No 284
>PRK06321 replicative DNA helicase; Provisional
Probab=48.85 E-value=42 Score=34.46 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~ 51 (479)
--+++...|+.|-..-++.+|...+ +.|..|.|++-+-...
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 3556667899999999999999987 4599999999875433
No 285
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.79 E-value=30 Score=28.86 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=36.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+++.||++.+.|.-||=...--+++.|+..|.+|...+.-
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 3578999999998899999999999999999999988763
No 286
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=48.79 E-value=19 Score=33.48 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=36.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
...++|+..+|.|-..=..+|+.+|..+|+.|+|++.+.+...+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 467888888888888888999999998899999999975444443
No 287
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=48.56 E-value=14 Score=32.38 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=29.7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i 53 (479)
|++...|+.|-+. ...+++.|.++|++|.++.++...+.+
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 4455555555544 488999999999999999998765554
No 288
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.55 E-value=32 Score=32.67 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=38.1
Q ss_pred hhcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 349 VLQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 349 lL~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+...+++ +|+-||-||++.|+.. ++|++.+-.. .+|. +..++.+++.+++++++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-Lt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-LTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-CCcCCHHHHHHHHHHHHcC
Confidence 3345666 9999999999988663 6787765432 1222 3336678888888888743
No 289
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=48.46 E-value=65 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
..-+++...|+.|=..-++.++...+++|..|.|++.+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 345666667899999999999999888999999999874
No 290
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=48.44 E-value=44 Score=33.72 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~ 51 (479)
--+++...|+.|-..-++.+|..++ +.|+.|.|++.+-...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~ 236 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAE 236 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 3566667789999999999998887 6799999999875433
No 291
>PHA02542 41 41 helicase; Provisional
Probab=48.19 E-value=21 Score=36.55 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=33.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
--+++..-|+.|-..-.+.+|...++.|+.|.|++-+-.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~ 229 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMA 229 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 346666789999999999999999889999999987643
No 292
>PRK06904 replicative DNA helicase; Validated
Probab=48.10 E-value=28 Score=35.71 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=33.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFIHNQ 52 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~ 52 (479)
--+++...|+.|-..-++.+|...+. .|+.|.|++.+-....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~q 264 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQ 264 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 35566668999999999999998875 5999999998754333
No 293
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=47.94 E-value=1.1e+02 Score=29.18 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCc--cccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHH
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEF--IHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAI 83 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~--~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~ 83 (479)
.+++||+++..|..+.+... .+...+. +++|.++.+.. .....++ .|+.+..++.... +
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al---~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~~-~-------- 149 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDL---LWRWRSGELPVEIAAVISNHDDLRSLVER-----FGIPFHHVPVTKE-T-------- 149 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHH---HHHHHcCCCCcEEEEEEEcChhHHHHHHH-----hCCCEEEeccCcc-c--------
Confidence 35799999999987665544 4444332 68888877643 2233333 6887776653210 0
Q ss_pred HHHHHHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 84 EKVIENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
.......+.+.++++ ++|+||.-.+.
T Consensus 150 ----~~~~~~~~~~~l~~~----~~Dlivlagy~ 175 (286)
T PRK06027 150 ----KAEAEARLLELIDEY----QPDLVVLARYM 175 (286)
T ss_pred ----cchhHHHHHHHHHHh----CCCEEEEecch
Confidence 011122244456666 99999977644
No 294
>PRK06849 hypothetical protein; Provisional
Probab=47.92 E-value=33 Score=34.19 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+|+|++.... ....+.+|+.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5888887422 2368999999999999999998753
No 295
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=47.86 E-value=33 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=28.6
Q ss_pred HHHHHHHhhccCCceEEEeCCCc------ccHHHHHHHhCCCcEeEcch
Q 011687 95 LERLINKINEDGRVACVVVDLLA------SSAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~------~~~~~~A~~lgiP~v~~~~~ 137 (479)
|...++++ .||+||+..-+ --+..+|+.||+|++.+...
T Consensus 104 La~ai~~~----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKA----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHh----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 45556655 79999975533 24678999999999997443
No 296
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=47.83 E-value=28 Score=33.47 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=35.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc---ccccccCCCCCCCeEEEeCC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI---HNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~---~~~i~~~~~~~~g~~~~~i~ 69 (479)
.+|||.|+-.|..| .++|+.|.+.||+|++...... .+.+++ ..+-+..+|
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~-----advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRSGLSLAAVLAD-----ADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCCCCCHHHHHhc-----CCEEEEECC
Confidence 46899999777665 4789999999999998876421 122222 456666666
No 297
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=47.50 E-value=60 Score=31.60 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCccc---cCCHHHHHHHHHHHHhCCCCeEEEEcCCc-CCCCChhhHhhhcCCCCce-EEe--eeeh-HHh
Q 011687 278 PNSVIYISFGSWVS---PIGEEKVKTLALTLEALGLPFIWVLGFAW-REGLPDGYLDRVSNSRQGK-VVP--WAPQ-LKV 349 (479)
Q Consensus 278 ~~~~Vyvs~Gs~~~---~~~~~~~~~l~~al~~~~~~~iw~~~~~~-~~~l~~~~~~~~~~~~nv~-~~~--~~pq-~~l 349 (479)
+++.|.+..|+ .. ..+.+.+.++++.+...++++++.-++.. +...-+.+.+..+ ..++. +.+ .+.+ ..+
T Consensus 180 ~~~~i~i~p~a-~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~-~~~~~~l~g~~sL~el~al 257 (344)
T TIGR02201 180 GQNYIVIQPTS-RWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQ-TPRVTSLAGKLTLPQLAAL 257 (344)
T ss_pred CCCEEEEeCCC-CccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCC-CCcccccCCCCCHHHHHHH
Confidence 45677788777 32 36778889999888776777765543221 1001111211111 01221 222 2334 458
Q ss_pred hcccCccceEeccchhHHHHHHHhCcceecc
Q 011687 350 LQHNAVGFYLTHCGWNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 350 L~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 380 (479)
+.++++ ||+. -.|.+.=|.+.|+|+|++
T Consensus 258 i~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 258 IDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 888888 9997 788999999999999977
No 298
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=47.46 E-value=1.1e+02 Score=29.15 Aligned_cols=101 Identities=8% Similarity=0.007 Sum_probs=55.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--CCCeEEEEcCC--ccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTS--RGFEPIVITPE--FIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~--rGh~V~~~~~~--~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
++|||+++..+..+.+. +|.+.... .+++|.++.+. ......++ .|+.+..++.... + .
T Consensus 88 ~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~-----~gIp~~~~~~~~~-~-----~--- 150 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-----HGIPFHHFPITPD-T-----K--- 150 (286)
T ss_pred cCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHH-----hCCCEEEeCCCcC-c-----h---
Confidence 57899999988755544 44444443 36898887653 23333444 6887776653111 0 0
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCc-ccHHHHHHHhCCCcEeE
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLA-SSAIGVACRCGVPAAGF 134 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~~~~~A~~lgiP~v~~ 134 (479)
......+.+.++++ ++|+||.-.+. .-...+-+.+.-..+-+
T Consensus 151 ----~~~~~~~~~~l~~~----~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 151 ----PQQEAQVLDVVEES----GAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred ----hhhHHHHHHHHHHh----CcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 01122244456666 89999977644 33333444443334443
No 299
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=47.41 E-value=38 Score=30.12 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
..+|++.+.++-.|-....-++..|..+|++|++++...
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 468999999999999999999999999999999999854
No 300
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=47.18 E-value=25 Score=28.09 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcccccccc
Q 011687 24 VTPMHKLASILTSRGFEPIVITPEFIHNQITS 55 (479)
Q Consensus 24 ~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~ 55 (479)
+.|...|.-.+.-|||+++++.|..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 45677777777889999999999988777654
No 301
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=47.00 E-value=98 Score=29.74 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|||+|+..+. -.+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 6888885443 445677888888999886554
No 302
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.35 E-value=98 Score=29.91 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
+..|+++..++.|-..-+..||..|+.+|++|.+++.+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 45777777788899999999999999999999999987653
No 303
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=46.26 E-value=84 Score=31.68 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.9
Q ss_pred CceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+||+||..... ..+|+++|||++.+
T Consensus 358 ~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCcc---chhhhhcCCCEEec
Confidence 89999988643 36899999999985
No 304
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=45.82 E-value=23 Score=32.49 Aligned_cols=43 Identities=7% Similarity=-0.108 Sum_probs=32.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcCCcccccccc
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITPEFIHNQITS 55 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~~~~~~~i~~ 55 (479)
|++.-.|+.+=+.-.+.+++.|.++ |++|.++.++...+.+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4544445555557899999999999 999999999875555543
No 305
>PLN02939 transferase, transferring glycosyl groups
Probab=45.78 E-value=37 Score=37.77 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=31.2
Q ss_pred CCCCEEEEecC---C---CCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 8 KKKNKILMVPY---P---AQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 8 ~~~~~i~~~~~---~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
.++|||+|++. | .+|=-.-.-+|.++|++.||+|.+++|.+
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 35799999873 2 23444455689999999999999999954
No 306
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.47 E-value=93 Score=20.99 Aligned_cols=44 Identities=2% Similarity=0.023 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhhcCCcceec
Q 011687 421 DSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLTRNDHQFHL 468 (479)
Q Consensus 421 ~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (479)
-+.-.+.+.++.+.+.. |-|+-+++...+..+...+.+....+-
T Consensus 10 HeqQQ~AVE~Iq~lMae----GmSsGEAIa~VA~elRe~hk~~~~~~~ 53 (60)
T COG3140 10 HEQQQKAVERIQELMAE----GMSSGEAIALVAQELRENHKGENRIVA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHc----cccchhHHHHHHHHHHHHhcccccccc
Confidence 45567788888888887 556668888888888888766543343
No 307
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=45.42 E-value=1.9e+02 Score=29.63 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=50.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc----ccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN----QITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~----~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~ 85 (479)
.++++++..+ .-.+.+++.|.+-|-+|..+.+..... .+.... ..+..+. .
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~--~~~~~v~--~---------------- 380 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELM--GEGTVML--D---------------- 380 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHc--CCCeEEE--e----------------
Confidence 4677665533 344688888999999998876532111 111100 0111110 0
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+.-...+.+.+++. +||++|... ....+|.++|||++.+
T Consensus 381 ---~~d~~e~~~~i~~~----~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 381 ---DANPRELLKLLLEY----KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred ---CCCHHHHHHHHhhc----CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 00112234455555 899999863 3467888999999875
No 308
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=45.32 E-value=46 Score=28.44 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=25.7
Q ss_pred EEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEE
Q 011687 281 VIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVL 316 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~ 316 (479)
.+|+++|| ....+...++..+.++.+.+.--++.+
T Consensus 3 ~vyl~LGS-Nlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGS-NLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecC-CCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999 665666778888888888765334443
No 309
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.10 E-value=31 Score=33.02 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=26.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+|||+|+.+|..+ ...-++|.+.||+|.-+.+..
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqp 34 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQP 34 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCC
Confidence 3899999887654 455677888999988877754
No 310
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.03 E-value=1.5e+02 Score=30.45 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc----ccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHH
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN----QITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEK 85 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~----~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~ 85 (479)
.++++++..+ ....++++.|.+.|-+|..+......+ .+.... ..+..+. .
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~--~~~~~v~--~---------------- 378 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM--GPDAHMI--D---------------- 378 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc--CCCcEEE--e----------------
Confidence 4677775443 345588888999999998887643211 111100 0111111 0
Q ss_pred HHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 86 VIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
+.-...+.+.+++. +||++|... ....+|+++|||++-
T Consensus 379 ---d~~~~e~~~~i~~~----~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 379 ---DANPRELYKMLKEA----KADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred ---CCCHHHHHHHHhhc----CCCEEEecC---chhhhhhhcCCCEEE
Confidence 00111233344444 899999974 456899999999984
No 311
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=44.97 E-value=1.1e+02 Score=32.14 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeee----------hHHhhcccCccceEeccc---
Q 011687 297 KVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAP----------QLKVLQHNAVGFYLTHCG--- 363 (479)
Q Consensus 297 ~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~p----------q~~lL~~~~~~~~I~HgG--- 363 (479)
..+.+++.|++.|.+.++-+.++....+-+.+. ++++++.+.-.- +..+-..+.+ +++|.|
T Consensus 15 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~----~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GpG~ 88 (564)
T PRK08155 15 GAELIVRLLERQGIRIVTGIPGGAILPLYDALS----QSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSGPGA 88 (564)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHh----ccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCCCcH
Confidence 356677777777777766665543221212221 112344432111 1112233444 788877
Q ss_pred ---hhHHHHHHHhCcceeccc
Q 011687 364 ---WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 364 ---~~s~~eal~~GvP~l~~P 381 (479)
.+.+.+|-..++|+|++.
T Consensus 89 ~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 89 TNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHHhcCCCEEEEe
Confidence 457889999999999984
No 312
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=44.96 E-value=33 Score=34.99 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHh--------CCCe----EEEEcC---C----ccccccccCCCCCCCeEEEeCCCCCCCC---C-
Q 011687 20 AQGHVTPMHKLASILTS--------RGFE----PIVITP---E----FIHNQITSSMDPRSEISCMSIPDGLEKN---E- 76 (479)
Q Consensus 20 ~~gH~~p~l~la~~L~~--------rGh~----V~~~~~---~----~~~~~i~~~~~~~~g~~~~~i~~~l~~~---~- 76 (479)
+.|.+-=.+.+|++|.+ .|-+ |.++|- + .+...++. .....+.....+|-+.... .
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~-~~gt~~a~IlRvPF~~~~gi~~kw 373 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEK-VSGTENARILRVPFGPEKGILRKW 373 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEE-ETTESSEEEEEE-ESESTEEE-S-
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccc-cCCCCCcEEEEecCCCCcchhhhc
Confidence 34666667788888754 2543 555553 1 12122222 2223455566666443321 1
Q ss_pred --CCCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCc--ccHHHHHHHhCCCcEeEcch
Q 011687 77 --PKDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLA--SSAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~--~~~~~~A~~lgiP~v~~~~~ 137 (479)
...++.+++.+. .....++.+.+ ...||+|+..... ..|..+++++|||.+.+..+
T Consensus 374 isrf~lWPyLe~fa---~d~~~~i~~e~--~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 374 ISRFDLWPYLEEFA---DDAEREILAEL--QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp --GGG-GGGHHHHH---HHHHHHHHHHH--TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred cchhhchhhHHHHH---HHHHHHHHHHh--CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 122333333333 23333344433 2389999966432 66889999999999987444
No 313
>PRK08006 replicative DNA helicase; Provisional
Probab=44.61 E-value=43 Score=34.35 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=68.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCccccccc-cCCCCCCCeEEEeCCCC-CCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHNQIT-SSMDPRSEISCMSIPDG-LEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~i~-~~~~~~~g~~~~~i~~~-l~~~~~~~~~~~~~~~ 87 (479)
--+++...|+.|-..-.+.+|...+ +.|+.|.|++-+-....+. ...+...++....+..+ +..+.+.........+
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~ 304 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGIL 304 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 4566667899999999999999887 4699999999874333332 21122234444333322 2211111111111111
Q ss_pred -HH----------hchHHHHHHHHHhh-ccCCceEEEeCCCccc-------------------HHHHHHHhCCCcEeEc
Q 011687 88 -EN----------IMPIHLERLINKIN-EDGRVACVVVDLLASS-------------------AIGVACRCGVPAAGFW 135 (479)
Q Consensus 88 -~~----------~~~~~l~~~l~~l~-~~~~~D~vi~D~~~~~-------------------~~~~A~~lgiP~v~~~ 135 (479)
.. .....++..++++. ...+.|+||.|.+... .-.+|..++||++.++
T Consensus 305 ~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 305 LEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 10 11223333444442 2236899999985421 0157888999999874
No 314
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=44.43 E-value=1.5e+02 Score=27.69 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhC---CCeEEEEcCCcccc
Q 011687 26 PMHKLASILTSR---GFEPIVITPEFIHN 51 (479)
Q Consensus 26 p~l~la~~L~~r---Gh~V~~~~~~~~~~ 51 (479)
-+.+|+++|... |++|+++.|+.-+.
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 345667777653 47999999976433
No 315
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=44.30 E-value=24 Score=33.69 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=25.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|||+|+..|..|- .+|..|++.||+|+++..+
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEecH
Confidence 6788887776654 5788899999999999873
No 316
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.29 E-value=40 Score=31.58 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=36.6
Q ss_pred cCccceEeccchhHHHHHHH------hCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 353 NAVGFYLTHCGWNSTMEAIQ------SGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~------~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+++ +|+-||=||++.|+. .++|++.+-.. .+|..- ..+++++.+.+++++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc-cCCHHHHHHHHHHHHcC
Confidence 455 999999999999986 47888776543 222222 35677788888888743
No 317
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=44.11 E-value=2.6e+02 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=33.4
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
+|.+|++.| +-|-=.-..+|+..|.+||++|+.+=-+.+.+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 478888865 55777888999999999999999998765543
No 318
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=44.07 E-value=36 Score=32.93 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCc-cc---------HHHHHHHhCCCcEeE
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLA-SS---------AIGVACRCGVPAAGF 134 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~---------~~~~A~~lgiP~v~~ 134 (479)
+...+.++++++ +||++|+-+-+ .. +..+.++++||.+.-
T Consensus 68 a~~~i~~mv~~~----~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKL----KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhc----CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 334455677777 99999999855 22 124668999999975
No 319
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=44.00 E-value=1.8e+02 Score=28.39 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=32.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCccc
Q 011687 13 ILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIH 50 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~ 50 (479)
++|...+|.|--.-...|++.|. .+|+.|.++..+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 45666788899999999999998 689999999997543
No 320
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.21 E-value=42 Score=34.40 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=38.9
Q ss_pred cccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 351 QHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 351 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
..+++ +|+=||-||++.|... ++|++.+-.. .+|. +..++.+++.++|++++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~G--------------~LGF-Lt~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSMG--------------SLGF-MTPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------Ccce-ecccCHHHHHHHHHHHHcC
Confidence 34566 9999999999999774 4676655321 2443 3447889999999999854
No 321
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.20 E-value=89 Score=31.66 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=25.9
Q ss_pred HHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 95 LERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+++++++. +||++|.+.. ...+|+++|||++.+
T Consensus 364 ~~~~l~~~----~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 364 IESYAKEL----KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHhc----CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 44455554 8999999973 478999999999975
No 322
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=42.89 E-value=40 Score=29.72 Aligned_cols=42 Identities=31% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCceEEEeCCCc-ccHHHHHHHhCCCcEeEcchh
Q 011687 95 LERLINKINEDGRVACVVVDLLA-SSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~-~~~~~~A~~lgiP~v~~~~~~ 138 (479)
+.+++++... +..++|-..+. +.+..+|+++|+|.|.+.|+.
T Consensus 49 l~~~i~~~~~--~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 49 LEQLIEELKP--ENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHhCCC--CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4445555411 12466766655 778889999999999987664
No 323
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=42.79 E-value=44 Score=32.27 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=26.5
Q ss_pred CceEEE-eCCCc-ccHHHHHHHhCCCcEeEcchhHH
Q 011687 107 RVACVV-VDLLA-SSAIGVACRCGVPAAGFWPAMLA 140 (479)
Q Consensus 107 ~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~~~ 140 (479)
.||+|| .|+.. ..+..=|.++|||.|.+..+..-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 689888 56544 66788899999999999776543
No 324
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=42.69 E-value=56 Score=29.88 Aligned_cols=98 Identities=15% Similarity=0.230 Sum_probs=50.6
Q ss_pred CCEEEEecCCCC-CCH---HHHHHHHHHHHhCCCeEEEEcCCcc--ccccccCCCCCCCeE--EEeCCCCCCCCCCCCHH
Q 011687 10 KNKILMVPYPAQ-GHV---TPMHKLASILTSRGFEPIVITPEFI--HNQITSSMDPRSEIS--CMSIPDGLEKNEPKDFF 81 (479)
Q Consensus 10 ~~~i~~~~~~~~-gH~---~p~l~la~~L~~rGh~V~~~~~~~~--~~~i~~~~~~~~g~~--~~~i~~~l~~~~~~~~~ 81 (479)
...|++.+..+. .-- .-+..|++.|.++|++|.+++++.. .+.+.... .++. +..+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~---~~~~~~~~~~~~----------- 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA---AGLQNPVINLAG----------- 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH---TTHTTTTEEETT-----------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH---HhcccceEeecC-----------
Confidence 456777776544 222 3358999999999999998888764 11111100 1111 111110
Q ss_pred HHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcc
Q 011687 82 AIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWP 136 (479)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~ 136 (479)
...+.++..-+. ..|++|+- ..+.+++|..+|+|.+.+..
T Consensus 171 ----------~~~l~e~~ali~---~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 171 ----------KTSLRELAALIS---RADLVIGN--DTGPMHLAAALGTPTVALFG 210 (247)
T ss_dssp ----------TS-HHHHHHHHH---TSSEEEEE--SSHHHHHHHHTT--EEEEES
T ss_pred ----------CCCHHHHHHHHh---cCCEEEec--CChHHHHHHHHhCCEEEEec
Confidence 111333332222 67999965 34678999999999999843
No 325
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=42.64 E-value=50 Score=30.57 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=33.9
Q ss_pred cCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHh
Q 011687 353 NAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl 419 (479)
+++ +|+-||=||++.|+.. ++|++.+-.. .+|...+....+++.+.+.++.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~G--------------~lGFL~~~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNRG--------------SVGFLMNEYSEDDLLERIAAAE 80 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeCC--------------CCCcccCCCCHHHHHHHHHHhh
Confidence 455 9999999999988765 6787776543 1233332345566666666665
No 326
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=42.62 E-value=15 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=26.4
Q ss_pred CceEEE-eCCCc-ccHHHHHHHhCCCcEeEcchhHHH
Q 011687 107 RVACVV-VDLLA-SSAIGVACRCGVPAAGFWPAMLAT 141 (479)
Q Consensus 107 ~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~~~~ 141 (479)
-||+++ .|+.. --|+.=|.++|||+|.+..+...+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 499887 67655 557788899999999987664333
No 327
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=42.19 E-value=1.1e+02 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=29.4
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 16 VPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 16 ~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
++.|+.|-.=-.+.|++.|.++|++|.+++-.+
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 456899998889999999999999999999864
No 328
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=41.66 E-value=1.4e+02 Score=28.33 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
.++|+++..|..|. .+|+.|.++||.|.++.-+...
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcH
Confidence 47899998888776 5899999999999999886543
No 329
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=41.48 E-value=38 Score=32.61 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=31.5
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
|||+|+.-| -.-+.+-+..|.++.++|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 578888754 235667889999999999999999999653
No 330
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=41.40 E-value=1.2e+02 Score=31.21 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=25.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR--GFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r--Gh~V~~~~~ 46 (479)
|||+++..|++.| +|+++|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7899988888877 678888776 999888854
No 331
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.26 E-value=1.7e+02 Score=29.05 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=38.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~ 52 (479)
++..|.|+..-+.|-..-|-.+|..++++|+.+-++|.+.|+..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 35678888888999999999999999999999999999877543
No 332
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=41.09 E-value=1.3e+02 Score=32.54 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEE-EEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPI-VITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~-~~~~~ 47 (479)
|||+|+..+..+ ....++|.+.||+|. ++|.+
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 688888654433 344578888999998 55543
No 333
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=40.69 E-value=1.2e+02 Score=30.96 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 97 RLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 97 ~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+.+++. +||++|... .+..+|+++|||++..
T Consensus 381 ~~i~~~----~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 381 EILEKL----KPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHhc----CCCEEEEcC---cchhhhhhcCCCeEec
Confidence 345555 899999886 3467999999999975
No 334
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=40.67 E-value=2.4e+02 Score=26.32 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLE 73 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~ 73 (479)
+|||+++.+++...-. .++.+|.+.|.+|.++..... ... .....+++...+|.+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~---~~~-~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDL---AAE-RKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccc---ccc-ccchhhCCEEEECCCCC
Confidence 4799999998775433 557889899999998876421 111 11124577778887754
No 335
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=40.48 E-value=70 Score=32.13 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 96 ERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 96 ~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
.+.++.. +||++|.... ...+|+++|||++..
T Consensus 349 ~~~i~~~----~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 349 KKLLKEK----KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHhhc----CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 3445554 8999999853 357899999999854
No 336
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.38 E-value=25 Score=35.00 Aligned_cols=44 Identities=27% Similarity=0.188 Sum_probs=34.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
.+||++...|+.+= +-...+++.|.+.|++|.++.++...+.+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 46777777676655 558999999999999999999987655554
No 337
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=40.15 E-value=83 Score=31.87 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.6
Q ss_pred ccCccceEeccc------hhHHHHHHHhCcceecc
Q 011687 352 HNAVGFYLTHCG------WNSTMEAIQSGKRLLCY 380 (479)
Q Consensus 352 ~~~~~~~I~HgG------~~s~~eal~~GvP~l~~ 380 (479)
++.+ +++|.| .+.+.+|...++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3444 888887 45677999999999999
No 338
>PRK10037 cell division protein; Provisional
Probab=39.91 E-value=49 Score=30.56 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=30.7
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
+.|.|... |+-|-..-+..||..|+++|++|.++=.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~ 38 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDA 38 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 46777776 6779999999999999999999999944
No 339
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=39.86 E-value=1.5e+02 Score=25.67 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=47.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC---ccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE---FIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~---~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 87 (479)
-.|-+++..+.|-....+.+|-.-+-+|.+|.++--= ........ .....++++.....++..........
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~-l~~l~~~~~~~~g~~f~~~~~~~~~~----- 77 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKA-LKKLPNVEIERFGKGFVWRMNEEEED----- 77 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHH-HGGGT--EEEE--TT----GGGHHHH-----
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHH-HHhCCeEEEEEcCCcccccCCCcHHH-----
Confidence 3577888899999998888877777778888777531 10001100 11123477776665443321111111
Q ss_pred HHhchHHHHHHHHHhhccCCceEEEeCCCc
Q 011687 88 ENIMPIHLERLINKINEDGRVACVVVDLLA 117 (479)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~ 117 (479)
...+...+....+.+. +..+|+||.|...
T Consensus 78 ~~~~~~~~~~a~~~i~-~~~~dlvILDEi~ 106 (172)
T PF02572_consen 78 RAAAREGLEEAKEAIS-SGEYDLVILDEIN 106 (172)
T ss_dssp HHHHHHHHHHHHHHTT--TT-SEEEEETHH
T ss_pred HHHHHHHHHHHHHHHh-CCCCCEEEEcchH
Confidence 3334444544444443 3489999999843
No 340
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.68 E-value=29 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=28.7
Q ss_pred EEEecCCCCCCHHH-HHHHHHHHH-hCCCeEEEEcCCcccccc
Q 011687 13 ILMVPYPAQGHVTP-MHKLASILT-SRGFEPIVITPEFIHNQI 53 (479)
Q Consensus 13 i~~~~~~~~gH~~p-~l~la~~L~-~rGh~V~~~~~~~~~~~i 53 (479)
|+..-.|+ ||... ...+.++|+ ++||+|.++.++...+.+
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi 43 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVV 43 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHH
Confidence 44444454 67655 889999998 469999999998755433
No 341
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.65 E-value=2.2e+02 Score=32.14 Aligned_cols=93 Identities=10% Similarity=0.094 Sum_probs=53.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc----cccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH----NQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~----~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
..+|++++..+. -...+++.|.+-|-+|..++..... ..+.+... .+...+ .
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~~--~~~~vi--~--------------- 374 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALMH--KDAHII--E--------------- 374 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhcC--CCCEEE--E---------------
Confidence 357888886543 3567888998999999886654311 11111000 011111 0
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcc
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWP 136 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~ 136 (479)
+.-...+.+.+++. +||++|.... ...+|+++|||++....
T Consensus 375 ----~~d~~el~~~i~~~----~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 375 ----DTSTAGLLRVMREK----MPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred ----CCCHHHHHHHHHhc----CCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 00011233445555 9999998753 35689999999997653
No 342
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=39.63 E-value=4.9e+02 Score=27.61 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=73.3
Q ss_pred CcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccce
Q 011687 279 NSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFY 358 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ 358 (479)
++.|-|-+|| ..+....+.....|++++..+-..+.+-+. .|+.+. .++-... -...++ |
T Consensus 410 ~~~v~i~~gs---~sd~~~~~~~~~~l~~~g~~~~~~v~sahr--~~~~~~------------~~~~~~~-~~~~~v--~ 469 (577)
T PLN02948 410 TPLVGIIMGS---DSDLPTMKDAAEILDSFGVPYEVTIVSAHR--TPERMF------------SYARSAH-SRGLQV--I 469 (577)
T ss_pred CCeEEEEECc---hhhHHHHHHHHHHHHHcCCCeEEEEECCcc--CHHHHH------------HHHHHHH-HCCCCE--E
Confidence 4456566666 344555666666666666655444433221 222211 1111111 011234 8
Q ss_pred EeccchhHHHHH---HHhCcceecccCccc---hhhHHHHHHHHh--ccee---eeCC-CCHHHHHHHHHHHhcCHHHHH
Q 011687 359 LTHCGWNSTMEA---IQSGKRLLCYPVAGD---QFINCAYIVKMW--KIGI---RVNG-FGKRDIEDGLKKLKEDSEMKH 426 (479)
Q Consensus 359 I~HgG~~s~~ea---l~~GvP~l~~P~~~D---Q~~nA~rv~~~~--Gvg~---~~~~-~~~~~i~~~i~~vl~~~~~~~ 426 (479)
|.=.|.-.-+-. -..-+|+|.+|.... -.+--.-+.+ + |+.+ .+++ .+...++..|-. +.|+++++
T Consensus 470 i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~~~~~aa~~a~~i~~-~~~~~~~~ 547 (577)
T PLN02948 470 IAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIGNATNAGLLAVRMLG-ASDPDLLD 547 (577)
T ss_pred EEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecCChHHHHHHHHHHHh-cCCHHHHH
Confidence 887775333333 233589999998542 2222233556 5 5432 2233 555555555422 36899999
Q ss_pred HHHHHHHHHccc
Q 011687 427 RLMNLYMRTMGD 438 (479)
Q Consensus 427 ~a~~l~~~~~~~ 438 (479)
+.+..++.+++.
T Consensus 548 ~~~~~~~~~~~~ 559 (577)
T PLN02948 548 KMEAYQEDMRDM 559 (577)
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
No 343
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=39.57 E-value=8.7 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.0
Q ss_pred chhHHHHHHHhCcceec
Q 011687 363 GWNSTMEAIQSGKRLLC 379 (479)
Q Consensus 363 G~~s~~eal~~GvP~l~ 379 (479)
|.|+++-+|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 68999999999999765
No 344
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=19 Score=35.67 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=32.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
-|++---|+-|--.-+++++..|+++| +|.|++.+..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 456666789999999999999999999 9999999853
No 345
>PRK07206 hypothetical protein; Provisional
Probab=39.14 E-value=99 Score=31.00 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=23.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
++++++-.... ...+++++.++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 45666664322 3468999999999999888753
No 346
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.04 E-value=26 Score=33.31 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|||+++..|..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888776655 4678889999999999987
No 347
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=38.97 E-value=53 Score=30.21 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
..++|+++.-.---=..-+-.....|+++|++|+++|-.
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 346666555322222344566677788999999999863
No 348
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.79 E-value=3.5e+02 Score=25.72 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=27.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 6 CTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 6 ~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
++.++|.-.+++.-+.-..-=.-.+++.|.++|.++.=+..
T Consensus 2 ~~~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq 42 (289)
T PRK13010 2 DAKPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQ 42 (289)
T ss_pred CccccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccc
Confidence 44445554444544444444566889999999999887765
No 349
>PRK07586 hypothetical protein; Validated
Probab=38.55 E-value=1.4e+02 Score=31.01 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=19.0
Q ss_pred eEeccchhHHH------HHHHhCcceeccc
Q 011687 358 YLTHCGWNSTM------EAIQSGKRLLCYP 381 (479)
Q Consensus 358 ~I~HgG~~s~~------eal~~GvP~l~~P 381 (479)
++.|.|-|.++ +|-..++|+|++.
T Consensus 68 ~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 68 TLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred EEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 77787755544 7999999999885
No 350
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.43 E-value=84 Score=29.58 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=32.6
Q ss_pred CceEEeeeehHH---hhcccCccceEeccchhHHHHHHHhCccee--cccCc
Q 011687 337 QGKVVPWAPQLK---VLQHNAVGFYLTHCGWNSTMEAIQSGKRLL--CYPVA 383 (479)
Q Consensus 337 nv~~~~~~pq~~---lL~~~~~~~~I~HgG~~s~~eal~~GvP~l--~~P~~ 383 (479)
++.++.|+||.+ +|--||+ .+| -|-.|+.-|..+|+|.+ ++|..
T Consensus 239 rvvklPFvpqddyd~LL~lcD~-n~V--RGEDSFVRAq~agkPflWHIYpQd 287 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF-NLV--RGEDSFVRAQLAGKPFLWHIYPQD 287 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc-cee--ecchHHHHHHHcCCCcEEEecCCc
Confidence 344559999865 8888887 233 37899999999999976 45544
No 351
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.41 E-value=45 Score=29.94 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=31.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+-|++..+|+.|-....-.||++|..++|+|...+.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 34555568999999999999999999999998877743
No 352
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.14 E-value=62 Score=28.70 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=28.8
Q ss_pred CEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVP--YPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~--~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+|++.++ -|+-|-..-...||..|+++|++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4444444 356688999999999999999999888654
No 353
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.08 E-value=43 Score=31.50 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=40.7
Q ss_pred hHHhhcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 346 QLKVLQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 346 q~~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+.++...+++ +|+=||=||++.|+.. ++|++.+-.. .+|... .++++++.+.+.+++++
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~-~~~~~~~~~~l~~~~~~ 98 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT-DIDPKNAYEQLEACLER 98 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc-cCCHHHHHHHHHHHHhc
Confidence 3444445666 9999999999988653 6787766432 133222 36678888888888753
Q ss_pred HHH
Q 011687 422 SEM 424 (479)
Q Consensus 422 ~~~ 424 (479)
.+|
T Consensus 99 g~~ 101 (272)
T PRK02231 99 GEF 101 (272)
T ss_pred CCc
Confidence 333
No 354
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=37.78 E-value=1.5e+02 Score=27.33 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEcCC------ccccccccCCCCCCCeEEEeCCC-CCCCCCCCCHHHHHHHHHHhchHHH
Q 011687 24 VTPMHKLASILTSRG-FEPIVITPE------FIHNQITSSMDPRSEISCMSIPD-GLEKNEPKDFFAIEKVIENIMPIHL 95 (479)
Q Consensus 24 ~~p~l~la~~L~~rG-h~V~~~~~~------~~~~~i~~~~~~~~g~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~l 95 (479)
+.|..++.+.|..-| .+|.++||= ..++.+++ .|+++..+.. +...+. . +.+.-...+
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~-----~G~eV~~~~~~~~~~~~--~-------ia~i~p~~i 170 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAV-----RGFEIVNFTCLGLTDDR--E-------MARISPDCI 170 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHh-----CCcEEeeeeccCCCCCc--e-------eeecCHHHH
Confidence 456677778887777 567777761 11233444 6777765532 222210 0 112233334
Q ss_pred HHHHHHhhccCCceEEEeCCCcccHH----HHHHHhCCCcEeE
Q 011687 96 ERLINKINEDGRVACVVVDLLASSAI----GVACRCGVPAAGF 134 (479)
Q Consensus 96 ~~~l~~l~~~~~~D~vi~D~~~~~~~----~~A~~lgiP~v~~ 134 (479)
.+.++++. ..++|.|+..-....+. .+-+.+|+|++..
T Consensus 171 ~~~~~~~~-~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 171 VEAALAAF-DPDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHHhc-CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 44554442 23788888543233333 3346789999864
No 355
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=37.54 E-value=3.3e+02 Score=28.33 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=33.1
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
||.+|++.| +-|-=.-..+|+..|.+||++|+.+=-+.+.+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYIN 44 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 478888866 44777888899999999999999998765543
No 356
>PRK08840 replicative DNA helicase; Provisional
Probab=37.47 E-value=56 Score=33.50 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=68.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCcccccccc-CCCCCCCeEEEeCCCC-CCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFIHNQITS-SMDPRSEISCMSIPDG-LEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~i~~-~~~~~~g~~~~~i~~~-l~~~~~~~~~~~~~~~ 87 (479)
--+++...|+.|-..-.+.+|...+. .|+.|.|++-+-..+.+.. ..+...++....+..+ +..+...........+
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l 297 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGIL 297 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34566667899999999999999874 5999999998754333321 1122234443333322 2111111111111222
Q ss_pred HH-----------hchHHHHHHHHHhh-ccCCceEEEeCCCccc---H----------------HHHHHHhCCCcEeEc
Q 011687 88 EN-----------IMPIHLERLINKIN-EDGRVACVVVDLLASS---A----------------IGVACRCGVPAAGFW 135 (479)
Q Consensus 88 ~~-----------~~~~~l~~~l~~l~-~~~~~D~vi~D~~~~~---~----------------~~~A~~lgiP~v~~~ 135 (479)
.. .....++..++++. ...+.|+||.|.+..- + -.+|..++||++.++
T Consensus 298 ~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 298 MEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred HhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 10 11223344444442 2235899999974411 1 157888999999874
No 357
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.42 E-value=1.4e+02 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCC-eEEEEcC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGF-EPIVITP 46 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh-~V~~~~~ 46 (479)
+..+|+++..|+-| -.+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 35789999888766 578999999998 6666655
No 358
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.41 E-value=61 Score=30.87 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=39.4
Q ss_pred HhhcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 348 KVLQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 348 ~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
.+...+++ +|+=||=||++.|+.. ++|++.+-.. .+| -+...+++++.+++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lG-FLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLG-FLATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCC-cccccCHHHHHHHHHHHHcC
Confidence 33345666 9999999999999873 6787776543 122 22336678888888888843
No 359
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=36.86 E-value=71 Score=30.43 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=28.2
Q ss_pred CCCEEEEecCCCCC-C---HHHHHHHHHHHHhCCCeEEEEcC
Q 011687 9 KKNKILMVPYPAQG-H---VTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 9 ~~~~i~~~~~~~~g-H---~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
+++||+++..|..+ | +....+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 36788888865442 3 34556889999999999988854
No 360
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=36.77 E-value=84 Score=30.81 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=53.2
Q ss_pred cccCCHHHHHHHHHHHHhCCCCeEEEEcCCcC-C----CCChh-h-HhhhcCCCC--ceEEeeeehHH---hhcccCccc
Q 011687 290 VSPIGEEKVKTLALTLEALGLPFIWVLGFAWR-E----GLPDG-Y-LDRVSNSRQ--GKVVPWAPQLK---VLQHNAVGF 357 (479)
Q Consensus 290 ~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~-~----~l~~~-~-~~~~~~~~n--v~~~~~~pq~~---lL~~~~~~~ 357 (479)
...+...-+..+++++++.+..+...+..+.. . .++.. . .+....-++ +.+..++||.+ +|-.||+ .
T Consensus 187 LF~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~-N 265 (371)
T TIGR03837 187 LFCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL-N 265 (371)
T ss_pred EEecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh-c
Confidence 34456666777777777766665544443210 0 01000 0 000000034 44458998754 9999997 4
Q ss_pred eEeccchhHHHHHHHhCccee--cccCc
Q 011687 358 YLTHCGWNSTMEAIQSGKRLL--CYPVA 383 (479)
Q Consensus 358 ~I~HgG~~s~~eal~~GvP~l--~~P~~ 383 (479)
||= |=.|+.-|..+|+|.| ++|..
T Consensus 266 fVR--GEDSFVRAqWAgkPfvWhIYPQe 291 (371)
T TIGR03837 266 FVR--GEDSFVRAQWAGKPFVWHIYPQE 291 (371)
T ss_pred Eee--chhHHHHHHHcCCCceeecccCc
Confidence 554 7899999999999986 45543
No 361
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.64 E-value=4.9e+02 Score=26.71 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCeEEEEc-CCcCCCCChhhHhhhcCCCCceEE-eeeehHHhhcccC-ccceEeccchhHHH
Q 011687 292 PIGEEKVKTLALTLEALGLPFIWVLG-FAWREGLPDGYLDRVSNSRQGKVV-PWAPQLKVLQHNA-VGFYLTHCGWNSTM 368 (479)
Q Consensus 292 ~~~~~~~~~l~~al~~~~~~~iw~~~-~~~~~~l~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~-~~~~I~HgG~~s~~ 368 (479)
....++..++-.|+.+-+.--||+-. ++...+-.+++..+.....++.+. .-..--.+|.+.+ |=++-+|-| .
T Consensus 163 a~~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~mg----f 238 (671)
T COG3563 163 ADASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQMG----F 238 (671)
T ss_pred cchhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHHHhcceeEEeecccc----H
Confidence 35567888899999988888888754 322222222222222222566665 3344455666654 333445544 6
Q ss_pred HHHHhCcceeccc
Q 011687 369 EAIQSGKRLLCYP 381 (479)
Q Consensus 369 eal~~GvP~l~~P 381 (479)
|||..|+|.+++.
T Consensus 239 eall~~~~~~~fg 251 (671)
T COG3563 239 EALLCGKPLTTFG 251 (671)
T ss_pred HHHhcCCceeeec
Confidence 9999999998764
No 362
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=36.47 E-value=68 Score=28.94 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+..+|++.+.++-.|-....=++..|..+|++|++++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3578999999999999999999999999999999999753
No 363
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=36.41 E-value=64 Score=32.71 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEcCCccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTS-RGFEPIVITPEFIHNQ 52 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~-rGh~V~~~~~~~~~~~ 52 (479)
.-+++...|+.|=..-++.+|..++. .|+.|.|++.+.....
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~ 238 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQ 238 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHH
Confidence 35566667899999999999998875 6999999998754333
No 364
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=36.31 E-value=70 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=23.0
Q ss_pred CceEEEeCCC--cccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLL--ASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~--~~~~~~~A~~lgiP~v~~ 134 (479)
++|.|++=.. .+.|..+|.++|+|+|..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 7999995442 367889999999999995
No 365
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.29 E-value=28 Score=32.16 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 22 GHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 22 gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|=-.-+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 444567789999999999999999853
No 366
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=36.29 E-value=1.1e+02 Score=26.88 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=45.4
Q ss_pred ecccCccchhhHHHHHHHHhcceeee----C----------CCCHHHHH----HHHHHHhcCHHHHHHHHHHHHHHccc
Q 011687 378 LCYPVAGDQFINCAYIVKMWKIGIRV----N----------GFGKRDIE----DGLKKLKEDSEMKHRLMNLYMRTMGD 438 (479)
Q Consensus 378 l~~P~~~DQ~~nA~rv~~~~Gvg~~~----~----------~~~~~~i~----~~i~~vl~~~~~~~~a~~l~~~~~~~ 438 (479)
-++|...||..--..+-++..+|+.- . .++++.|+ +.|+++|.|+.+-++-.++.+.+.++
T Consensus 21 WG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 21 WGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNA 99 (187)
T ss_pred CCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHH
Confidence 35677888888888754448888744 1 17788886 78899999999888888887777764
No 367
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=36.27 E-value=1.1e+02 Score=29.95 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=54.6
Q ss_pred CEEEEecCCCCC---C--HHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCC-Ce--EEEeCCCCCCCCCCCCHHH
Q 011687 11 NKILMVPYPAQG---H--VTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRS-EI--SCMSIPDGLEKNEPKDFFA 82 (479)
Q Consensus 11 ~~i~~~~~~~~g---H--~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~-g~--~~~~i~~~l~~~~~~~~~~ 82 (479)
.-|+|.|..+.| + ..-+.+|++.|.++|++|.+++++.-++..++...... .. ....+.
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~------------- 247 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA------------- 247 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeecc-------------
Confidence 456666643222 1 33578999999888999999887653232222000000 00 000000
Q ss_pred HHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 83 IEKVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
....+.++..-+. +.|++|+. ..+.+++|..+|+|.|.+
T Consensus 248 --------g~~sL~el~ali~---~a~l~I~n--DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 248 --------GETQLEQAVILIA---ACKAIVTN--DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred --------CCCCHHHHHHHHH---hCCEEEec--CChHHHHHHHhCCCEEEE
Confidence 1112333333332 67899976 346789999999999987
No 368
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.25 E-value=2.8e+02 Score=23.87 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=46.2
Q ss_pred CceEEEcCchhhhhhhhhhhhhcccccccCCCceeEeccccccccccCCCCCcccchhhhhhhcCCCCCcEEEEEeCCcc
Q 011687 211 LKWLLVNSFPEEYMDDIKQQYHHSKGATLCRPKVLLVGPLSKHATIAKNPSLWEEDKSCIDWLDNQKPNSVIYISFGSWV 290 (479)
Q Consensus 211 ~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Vyvs~Gs~~ 290 (479)
....++.+.++.-..... .++. . -|++..+|-..... ....++++.+.+.. .+-.+|+|++|+
T Consensus 49 ~~ifllG~~~~~~~~~~~--~l~~----~-yP~l~ivg~~~g~f-------~~~~~~~i~~~I~~-~~pdiv~vglG~-- 111 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAA--NLRR----R-YPGLRIVGYHHGYF-------DEEEEEAIINRINA-SGPDIVFVGLGA-- 111 (172)
T ss_pred CeEEEEeCCHHHHHHHHH--HHHH----H-CCCeEEEEecCCCC-------ChhhHHHHHHHHHH-cCCCEEEEECCC--
Confidence 345666666655433332 4444 3 36777777544321 12345567777774 333499999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEEc
Q 011687 291 SPIGEEKVKTLALTLEALGLPFIWVLG 317 (479)
Q Consensus 291 ~~~~~~~~~~l~~al~~~~~~~iw~~~ 317 (479)
+.+=.-+..--..++..++..++
T Consensus 112 ----PkQE~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 112 ----PKQERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred ----CHHHHHHHHHHHHCCCCEEEEEC
Confidence 22222233334455666555554
No 369
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=35.96 E-value=59 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
..+||+++..|..| +++|+.|.++|++|++.-...
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCC
Confidence 36899999999888 899999999999999998643
No 370
>PRK13236 nitrogenase reductase; Reviewed
Probab=35.91 E-value=72 Score=30.43 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=29.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
..|.|+.=|+-|-..-...||..|+++|++|.++-.+
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3444444467799999999999999999999999654
No 371
>PRK05636 replicative DNA helicase; Provisional
Probab=35.76 E-value=57 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=30.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCcc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFI 49 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~ 49 (479)
--+++...|+.|-..-++.+|...+ +.|..|.|++.+-.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 3456666789999999999998876 46889999987653
No 372
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=35.67 E-value=3.1e+02 Score=25.67 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=60.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccccc-C---------CCCCCCeEEEeCCCCCCCCCC
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITS-S---------MDPRSEISCMSIPDGLEKNEP 77 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~-~---------~~~~~g~~~~~i~~~l~~~~~ 77 (479)
.+..+|.+.-.|+-|--.-.-.|++.|.++|++|-+++-+...+.--. . ...-+++=+.+.+. .
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~at------R 100 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMAT------R 100 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---------
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCc------C
Confidence 345688888889999999999999999999999999886432111100 0 00113443444431 2
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhccCCceEEEeCCCccc--HHHHHHHhCCCcEeE
Q 011687 78 KDFFAIEKVIENIMPIHLERLINKINEDGRVACVVVDLLASS--AIGVACRCGVPAAGF 134 (479)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~--~~~~A~~lgiP~v~~ 134 (479)
..+...-....+ .-.+++.. .+|+||.+-...+ -..+++..++=++++
T Consensus 101 G~lGGls~~t~~-----~v~ll~aa----G~D~IiiETVGvGQsE~~I~~~aD~~v~v~ 150 (266)
T PF03308_consen 101 GSLGGLSRATRD-----AVRLLDAA----GFDVIIIETVGVGQSEVDIADMADTVVLVL 150 (266)
T ss_dssp SSHHHHHHHHHH-----HHHHHHHT----T-SEEEEEEESSSTHHHHHHTTSSEEEEEE
T ss_pred CCCCCccHhHHH-----HHHHHHHc----CCCEEEEeCCCCCccHHHHHHhcCeEEEEe
Confidence 223333222222 22345555 9999999853322 356677776666664
No 373
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.65 E-value=1.3e+02 Score=27.93 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCC-CeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcc
Q 011687 27 MHKLASILTSRG-FEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKINED 105 (479)
Q Consensus 27 ~l~la~~L~~rG-h~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (479)
+-..++.|.+.+ .+|.+.|.....+...........+-+..+|..-..- .....+++...-....+.=..+++++
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~-g~~~~~iia~~GPfs~e~n~al~~~~--- 193 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESAL-GFPPKNIIAMQGPFSKELNRALFRQY--- 193 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccC-CCChhhEEEEeCCCCHHHHHHHHHHc---
Confidence 456677777777 5565555532222221101112345556666322210 00011111111111222234577777
Q ss_pred CCceEEEeCCCcccH----HHHHHHhCCCcEeE
Q 011687 106 GRVACVVVDLLASSA----IGVACRCGVPAAGF 134 (479)
Q Consensus 106 ~~~D~vi~D~~~~~~----~~~A~~lgiP~v~~ 134 (479)
+.|+||+=.....| ..+|+.+|||++++
T Consensus 194 -~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 194 -GIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred -CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 99999976543223 48999999999997
No 374
>PRK12828 short chain dehydrogenase; Provisional
Probab=35.55 E-value=72 Score=28.65 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=23.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.+++++ + |+.|.+ -..+++.|.++|++|.++...
T Consensus 7 ~k~vlI-t-Gatg~i--G~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 7 GKVVAI-T-GGFGGL--GRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCEEEE-E-CCCCcH--hHHHHHHHHHCCCeEEEEeCC
Confidence 344444 3 445655 377889999999999888763
No 375
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.32 E-value=69 Score=30.51 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=38.4
Q ss_pred hhcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 349 VLQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 349 lL~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+...+++ +|+=||=||++.|+.. ++|++.+-.. .+|. +..++++++.+++++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGF-l~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGF-LTDLDPDNALQQLSDVLEG 119 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCc-ccccCHHHHHHHHHHHHcC
Confidence 3334566 9999999999999852 6777665442 1222 2236688899999998843
No 376
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.25 E-value=85 Score=28.38 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=25.2
Q ss_pred cCCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 4 MMCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 4 ~~~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
||.+++.+++ +++. +.| .=-..+++.|+++|++|.++...
T Consensus 1 ~~~~~~~~~v-lVtG-~sg--~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 1 MAQSLQGKNA-LITG-AGR--GIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CCccCCCCEE-EEEc-CCc--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 3444333444 4443 334 33467888999999999988754
No 377
>PRK07236 hypothetical protein; Provisional
Probab=34.72 E-value=73 Score=31.58 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=27.8
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 8 KKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 8 ~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|+.++|+|+-.| ..-+.+|..|+++|++|+++=..
T Consensus 4 ~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 456889988766 44578899999999999998753
No 378
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.62 E-value=1.3e+02 Score=27.93 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCceEEEeCCCccc-----HHHHHHHhCCCcEeE
Q 011687 96 ERLINKINEDGRVACVVVDLLASS-----AIGVACRCGVPAAGF 134 (479)
Q Consensus 96 ~~~l~~l~~~~~~D~vi~D~~~~~-----~~~~A~~lgiP~v~~ 134 (479)
..+++++ +.|+||+=...-. =..+|+.+|||+|++
T Consensus 189 ~all~q~----~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 189 KALLEQY----RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHHh----CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 4567777 9999998663322 258999999999997
No 379
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.48 E-value=74 Score=30.53 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=39.3
Q ss_pred hcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 350 LQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 350 L~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
...+++ +|+=||=||++.|... ++|++.+... .+|..- ...++++.+++++++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA-EAEAEDLDEAVERVVDR 128 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec-cCCHHHHHHHHHHHHcC
Confidence 334566 9999999999999764 7888877653 223222 36678888889888843
No 380
>PLN02327 CTP synthase
Probab=34.38 E-value=4e+02 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
||.+|++.| +-|-=.-..+|+..|..||++|+.+=-+.+.+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlN 44 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLN 44 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccc
Confidence 478888876 44777888899999999999999998765544
No 381
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=34.36 E-value=74 Score=30.31 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=30.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.+|.|..=|+-|-..-...||..|++.|++|.++-.+
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4666665567799999999999999999999999554
No 382
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=34.32 E-value=1.5e+02 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=24.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||+++-.|..+ ..|++++.+-|+.+++++.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECC
Confidence 688888777664 468888888888777776543
No 383
>PRK05380 pyrG CTP synthetase; Validated
Probab=34.18 E-value=3.3e+02 Score=28.37 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.8
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
+|.+|++.| +-|-=.-..+|+..|.+||++|+.+=-+.+.+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlN 45 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYIN 45 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 788999976 44777788899999999999999998765544
No 384
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.13 E-value=57 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+.++|+++..|.-| ...++.|.+.|++|+++.++.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 45788888655433 678999999999999997543
No 385
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.09 E-value=72 Score=28.80 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~ 52 (479)
...+++...|+.|-..-++.++...+++|+.|.|++.+...+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~ 58 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREER 58 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHH
Confidence 3455666667889988888888887788999999998754433
No 386
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=33.97 E-value=96 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=21.5
Q ss_pred cceEeccc------hhHHHHHHHhCcceeccc
Q 011687 356 GFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 356 ~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
+++++|.| .+.+.+|...++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34888877 567899999999999984
No 387
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=33.75 E-value=78 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC
Q 011687 25 TPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 25 ~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~ 69 (479)
.-...+|+.|.+.|+++. .|. ...+.+.+ .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~-GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STG-GTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ecc-HHHHHHHH-----cCCeEEEhh
Confidence 457799999999999994 554 44577777 788777665
No 388
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.50 E-value=1.2e+02 Score=29.55 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEecCCCC--CCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCCCCCC---------CCC
Q 011687 10 KNKILMVPYPAQ--GHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDGLEKN---------EPK 78 (479)
Q Consensus 10 ~~~i~~~~~~~~--gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~---------~~~ 78 (479)
++||.+++.|+. |==....++.+.+..+|.+|.-+-... .-.+.. . +.++......+ ...
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy-~GL~~~------~--i~~l~~~~v~~~~~~GGT~lgss 72 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGY-LGLLEG------D--IKPLTREDVDDLINRGGTFLGSA 72 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecch-hhhcCC------c--ceeccccchhHHHhcCCeEEeeC
Confidence 489999998754 666778899999999999999887744 233332 1 22221110000 000
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhccCCceEEE---eCCCcccHHHHHHHhCCCcEeE
Q 011687 79 DFFAIEKVIENIMPIHLERLINKINEDGRVACVV---VDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~vi---~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
...++ + ..+.....++.++.. +.|.+| -|...-.+..+++..++|+|.+
T Consensus 73 R~~~~-~-----~~e~~~~~~~~l~~~-gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 73 RFPEF-K-----TEEGRKVAAENLKKL-GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CCCCc-c-----cHHHHHHHHHHHHHc-CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 00000 0 011111233333322 677766 4555577889999999999985
No 389
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=33.41 E-value=63 Score=32.24 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCc-cc---------HHHHHHHhCCCcEeEc
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLA-SS---------AIGVACRCGVPAAGFW 135 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~---------~~~~A~~lgiP~v~~~ 135 (479)
+...+.++++++ +||++|+.+-+ .. +..+.++++||.+.-.
T Consensus 64 a~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 64 AKAKVLEMIKGA----NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 334455677777 99999999855 22 1245688999999864
No 390
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.38 E-value=63 Score=32.21 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhhccCCceEEEeCCCc-cc---------HHHHHHHhCCCcEeEc
Q 011687 91 MPIHLERLINKINEDGRVACVVVDLLA-SS---------AIGVACRCGVPAAGFW 135 (479)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~D~vi~D~~~-~~---------~~~~A~~lgiP~v~~~ 135 (479)
+...+.++++++ +||++|+.+-+ .. +..+.++++||.+.-.
T Consensus 64 a~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 64 AVARVLEMLKDK----EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 334455677777 99999999855 22 1245688999999864
No 391
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=33.35 E-value=2e+02 Score=25.84 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.5
Q ss_pred chhhhhhhcCC--CCCcEEEEEeCCccccCCHHHHHHHHHHHHhC-CCCeE
Q 011687 266 DKSCIDWLDNQ--KPNSVIYISFGSWVSPIGEEKVKTLALTLEAL-GLPFI 313 (479)
Q Consensus 266 ~~~l~~~l~~~--~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~-~~~~i 313 (479)
.+.+.+++... ....++||.-.| ....+....+.++++++ +..+.
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs---~~~~~~~~~~~~a~~~l~G~~~~ 64 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTAS---GDRDEYTARFYAAFESLRGVEVS 64 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCC---CCHHHHHHHHHHHHhhccCcEEE
Confidence 33455666543 355688888766 35667788899999998 87664
No 392
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=33.11 E-value=32 Score=29.44 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|+|.|+-.|..| .++|+.|.++||+|++.-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 789999887655 4789999999999988753
No 393
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=33.03 E-value=44 Score=34.12 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=26.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||+++..|- .-++-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 5777776553 45788999999999999997753
No 394
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=33.02 E-value=73 Score=29.61 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=31.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
++|+|+.=||-|-..-+..||..|+++|++|.++=-+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 4577776577899999999999999999999998654
No 395
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=32.95 E-value=1.1e+02 Score=32.10 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.0
Q ss_pred ccceEeccc------hhHHHHHHHhCcceeccc
Q 011687 355 VGFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 355 ~~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
.+++++|.| .+.+.+|...++|+|++.
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 334888887 567889999999999994
No 396
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.94 E-value=82 Score=28.44 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=22.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
++|++. |+.|++ -..|++.|.++||+|++++..
T Consensus 7 ~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 7 RVALVT--GAARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 455553 445554 467899999999999776653
No 397
>PRK09739 hypothetical protein; Provisional
Probab=32.92 E-value=1e+02 Score=27.22 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCEEEEecC-CCC-CCH-HHHHHHHHHHHhCCCeEEEEc
Q 011687 10 KNKILMVPY-PAQ-GHV-TPMHKLASILTSRGFEPIVIT 45 (479)
Q Consensus 10 ~~~i~~~~~-~~~-gH~-~p~l~la~~L~~rGh~V~~~~ 45 (479)
+|||+++.. |-. |.- .-...+++.|.++||+|+++-
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 467777754 432 222 224456777777899998764
No 398
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.82 E-value=93 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=32.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888764
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.76 E-value=35 Score=33.24 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=27.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||+|+..|..|- .+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHH
Confidence 7899998776664 57888999999999998743
No 400
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.67 E-value=98 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHhhc---cCCceEEEeCCCc-c---------cHHHHHHHhCCCcEeEcch
Q 011687 96 ERLINKINE---DGRVACVVVDLLA-S---------SAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 96 ~~~l~~l~~---~~~~D~vi~D~~~-~---------~~~~~A~~lgiP~v~~~~~ 137 (479)
+..+.+++. .+.||+|++..-+ . -+..+|+++|+|++-.+.+
T Consensus 110 rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 344555522 3489999987644 1 2678999999999986543
No 401
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=32.65 E-value=1.6e+02 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCcc
Q 011687 28 HKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 28 l~la~~L~~rGh~V~~~~~~~~ 49 (479)
.++|..++++|++|.++..+..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 4678899999999999998653
No 402
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.64 E-value=93 Score=29.73 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=39.6
Q ss_pred HhhcccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 348 KVLQHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 348 ~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
++...+++ +|+=||=||++.|... ++|++.+-.. .+|..- .++.+++.+++++++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee-ccCHHHHHHHHHHHHcC
Confidence 33335666 9999999999999753 6788776532 122222 36788899999998844
No 403
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=32.43 E-value=4.1e+02 Score=24.62 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.4
Q ss_pred EEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 12 KILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 12 ~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
|.+|++.| +-|-=.-..+|+..|.+||++|+.+=-+.+.+
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 43 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLN 43 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 35666654 44667788899999999999999988765543
No 404
>PLN02929 NADH kinase
Probab=32.41 E-value=47 Score=31.73 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=41.1
Q ss_pred ccCccceEeccchhHHHHHHH---hCcceecccCcc------chhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 352 HNAVGFYLTHCGWNSTMEAIQ---SGKRLLCYPVAG------DQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 352 ~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~------DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
.+++ +|+-||=||++.|.. .++|+|++-... ++..|... +. .-+|.. ...+.+++.+.+++++++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL-~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHL-CAATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccc-ccCCHHHHHHHHHHHHcC
Confidence 4456 999999999999855 468988875542 12222211 11 123322 236788999999999854
No 405
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.28 E-value=92 Score=29.32 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=34.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
+..|+|+..+|-|-..-...||..|+++|++|.+++.+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4566667667889999999999999999999999998754
No 406
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=32.10 E-value=78 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=30.2
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.|.|... ||-|-..-+..||..|+.+|++|.++=.+
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 34555554 77799999999999999999999998553
No 407
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.06 E-value=3.4e+02 Score=31.32 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=30.2
Q ss_pred CCCEEEEecCCCC--CCH----HHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 9 KKNKILMVPYPAQ--GHV----TPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 9 ~~~~i~~~~~~~~--gH~----~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
..+||+++..|.. |+. +....++++|.+.|++|.++.+..
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 3578888887643 432 366789999999999999998753
No 408
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.03 E-value=89 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=34.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
.+|++.+.++-+|-.----++..|...|++|.......
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v 39 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLS 39 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCC
Confidence 57899999999999999899999999999999998753
No 409
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=31.78 E-value=92 Score=32.92 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.2
Q ss_pred cceEeccchh------HHHHHHHhCcceeccc
Q 011687 356 GFYLTHCGWN------STMEAIQSGKRLLCYP 381 (479)
Q Consensus 356 ~~~I~HgG~~------s~~eal~~GvP~l~~P 381 (479)
+++++|.|-| .+.+|...++|+|++-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388898854 5789999999999984
No 410
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.66 E-value=58 Score=30.74 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=35.7
Q ss_pred cCccceEeccchhHHHHHHH---hCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 353 NAVGFYLTHCGWNSTMEAIQ---SGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+++ +|.-||-||+++++. .++|+++++... + |. +..++++++.+++.+++++
T Consensus 58 ~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GF-l~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GF-LTEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cc-cccCCHHHHHHHHHHHHcC
Confidence 455 999999999999984 356887777541 1 21 1125577888888888743
No 411
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.59 E-value=92 Score=28.74 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=29.6
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
++|++... ||-|-..-+.+||..|++.|++|..+=-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34555554 7779999999999999999999998864
No 412
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.53 E-value=57 Score=29.71 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|+++++..|-.| ..+|+.|.+.||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 566666655444 579999999999999998864
No 413
>PRK05114 hypothetical protein; Provisional
Probab=31.33 E-value=1.6e+02 Score=20.20 Aligned_cols=40 Identities=3% Similarity=0.010 Sum_probs=32.0
Q ss_pred cCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhhcCC
Q 011687 420 EDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLTRND 463 (479)
Q Consensus 420 ~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 463 (479)
+-+.-.+.+.++.+++.. |-|+-.++...++.+...++..
T Consensus 9 tHeeQQ~AVErIq~LMaq----GmSsgEAI~~VA~eiRe~~~~~ 48 (59)
T PRK05114 9 THEQQQKAVERIQELMAQ----GMSSGEAIALVAEELRANHQGE 48 (59)
T ss_pred CHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHhcc
Confidence 446678889999999988 6677789999999888877644
No 414
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.29 E-value=3.3e+02 Score=24.01 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
...+.++..++.|=..-++.++...++.|..|.|+..+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 345666667888999999999999999999999999974
No 415
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.02 E-value=1.2e+02 Score=31.91 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred ccceEeccc------hhHHHHHHHhCcceeccc
Q 011687 355 VGFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 355 ~~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
.++++.|.| .+.+.+|...++|+|++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 334888888 567889999999999984
No 416
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=31.01 E-value=83 Score=31.37 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=29.6
Q ss_pred CEEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 011687 11 NKILMVPY-PAQGHVTPMHKLASILTSRGFEPIVIT 45 (479)
Q Consensus 11 ~~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~ 45 (479)
..|.|... ||-|-..-...||..|+.+|++|.++=
T Consensus 107 ~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 107 VVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44555555 777999999999999999999999985
No 417
>PHA02518 ParA-like protein; Provisional
Probab=30.96 E-value=95 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=31.0
Q ss_pred EEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 12 KILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 12 ~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
.|.|... |+-|-..-...||.+|+++|++|.++-.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4566654 777999999999999999999999997653
No 418
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=30.88 E-value=2.1e+02 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=25.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|||+++..|++.| +|++.|++.|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 8999988887776 688889888988887744
No 419
>PRK07773 replicative DNA helicase; Validated
Probab=30.81 E-value=92 Score=34.93 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=68.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEcCCcccccccc-CCCCCCCeEEEeCCCC-CCCCCCCCHHHHHHHH
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR-GFEPIVITPEFIHNQITS-SMDPRSEISCMSIPDG-LEKNEPKDFFAIEKVI 87 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~~~~~~~~~~i~~-~~~~~~g~~~~~i~~~-l~~~~~~~~~~~~~~~ 87 (479)
--+++...|+.|-..-++.+|...+.+ |..|.|++-+.....+.. ..+...++....+..+ +... ++..+....
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~---~~~~~~~a~ 294 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDD---DWTRLARAM 294 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH---HHHHHHHHH
Confidence 456677789999999999999998754 889999998754333322 1111123332222211 1110 111111111
Q ss_pred HH-------------hchHHHHHHHHHhhccCCceEEEeCCCccc-------------------HHHHHHHhCCCcEeEc
Q 011687 88 EN-------------IMPIHLERLINKINEDGRVACVVVDLLASS-------------------AIGVACRCGVPAAGFW 135 (479)
Q Consensus 88 ~~-------------~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~-------------------~~~~A~~lgiP~v~~~ 135 (479)
.. .....++..++++....+.|+||.|.+..- --.+|..++||++.++
T Consensus 295 ~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~ls 374 (886)
T PRK07773 295 GEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALS 374 (886)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEec
Confidence 11 011223333344433337999999985521 1257889999999985
Q ss_pred c
Q 011687 136 P 136 (479)
Q Consensus 136 ~ 136 (479)
-
T Consensus 375 Q 375 (886)
T PRK07773 375 Q 375 (886)
T ss_pred c
Confidence 4
No 420
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.77 E-value=56 Score=29.02 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=25.8
Q ss_pred CceEEE-eCCCc-ccHHHHHHHhCCCcEeEcchh
Q 011687 107 RVACVV-VDLLA-SSAIGVACRCGVPAAGFWPAM 138 (479)
Q Consensus 107 ~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~ 138 (479)
.||+|| .|+.. .-+..=|.++|||.|.+..+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 688877 67655 668888999999999997664
No 421
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.75 E-value=2.1e+02 Score=30.25 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.6
Q ss_pred ccceEeccc------hhHHHHHHHhCcceeccc
Q 011687 355 VGFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 355 ~~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
.+++++|.| .+.+.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 334888888 456789999999999984
No 422
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.67 E-value=48 Score=30.19 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 23 HVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 23 H~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|...|...|++|.++|++|.++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56789999999999999999999863
No 423
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=30.63 E-value=3.3e+02 Score=26.71 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=57.7
Q ss_pred eehHHh-hcccCccceEecc---chh-HHHHHHHhCcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHH
Q 011687 344 APQLKV-LQHNAVGFYLTHC---GWN-STMEAIQSGKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKL 418 (479)
Q Consensus 344 ~pq~~l-L~~~~~~~~I~Hg---G~~-s~~eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~v 418 (479)
.+--+. -.|.|+ +|+|= |.| ..+|+|+.|-|.| .|+..+.+ +|...+.++..+=++++.++
T Consensus 261 ~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d---~GYYY~~fD~~~G~r~L~~A 326 (364)
T PF10933_consen 261 FDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD---VGYYYPDFDAFEGARQLLRA 326 (364)
T ss_pred cChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc---cCcCCCCccHHHHHHHHHHH
Confidence 343333 346777 99994 222 5689999999987 78877765 78888776666666666666
Q ss_pred h-----cCHHHHHHHHHHHHHHccc
Q 011687 419 K-----EDSEMKHRLMNLYMRTMGD 438 (479)
Q Consensus 419 l-----~~~~~~~~a~~l~~~~~~~ 438 (479)
+ +-+.|+++++++-....-.
T Consensus 327 ~~~HD~~~~~Y~~ra~~~l~~~~p~ 351 (364)
T PF10933_consen 327 IREHDADLDAYRARARRLLDRLSPE 351 (364)
T ss_pred HHHccccHHHHHHHHHHHHHhhCCC
Confidence 5 2277999999998888763
No 424
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.60 E-value=75 Score=20.53 Aligned_cols=25 Identities=8% Similarity=0.302 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHH
Q 011687 407 GKRDIEDGLKKLKED-SEMKHRLMNL 431 (479)
Q Consensus 407 ~~~~i~~~i~~vl~~-~~~~~~a~~l 431 (479)
++++|.+||..+.++ -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 578899999999866 6666666543
No 425
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=30.57 E-value=1e+02 Score=26.38 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.+.|+.+-..|-..-+-.|++.|.+|||+|.++=+.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 5677777788899999999999999999999998774
No 426
>PRK05748 replicative DNA helicase; Provisional
Probab=30.56 E-value=1.2e+02 Score=30.83 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=33.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEcCCccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILT-SRGFEPIVITPEFIHNQ 52 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~-~rGh~V~~~~~~~~~~~ 52 (479)
.-+++...|+.|-..-.+.+|...+ +.|..|.|++.+-....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~ 246 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAES 246 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHH
Confidence 4566777889999999999999887 46999999998754333
No 427
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=30.55 E-value=57 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITS 55 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~ 55 (479)
..+|.++.+|-.|.+ +|+.|.++||.|....-+.+.+..+.
T Consensus 52 tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsdyssaa~~ 92 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSDYSSAAEK 92 (480)
T ss_pred ceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcchhHHHHHH
Confidence 578888888877754 68999999999988877654333333
No 428
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.53 E-value=71 Score=28.36 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=33.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
..|+|+...|-|-..-...||..++.+|.+|.+++.+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 4567777778899999999999999999999999998764
No 429
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=30.49 E-value=78 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC
Q 011687 25 TPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 25 ~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~ 69 (479)
.-...+|+.|.+.|+++. .|. ...+.+.+ .|+.+..+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATg-GTak~L~e-----~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STG-GTAKLLAE-----AGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eec-hHHHHHHH-----CCCeEEEee
Confidence 446789999999999994 444 44477777 788777665
No 430
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=30.45 E-value=4.3e+02 Score=27.96 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=35.8
Q ss_pred eEeccchhHHH-HHHHhCcceecccCccchhhHHHHHHHHhcc-eeeeCCCCHHHHHHHHHHHh
Q 011687 358 YLTHCGWNSTM-EAIQSGKRLLCYPVAGDQFINCAYIVKMWKI-GIRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 358 ~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~nA~rv~~~~Gv-g~~~~~~~~~~i~~~i~~vl 419 (479)
+++.||++.+. +....|.+-.. .....++.++..+- +|+ |..+ -+.++|.+++++.+
T Consensus 459 V~NN~~~g~i~~~q~~~~~~~~~--~~~~~~df~~lA~a-~G~~~~~v--~~~~el~~al~~a~ 517 (578)
T PRK06546 459 VFNNSTLGMVKLEMLVDGLPDFG--TDHPPVDYAAIAAA-LGIHAVRV--EDPKDVRGALREAF 517 (578)
T ss_pred EEECCccccHHHHHHhcCCCccc--ccCCCCCHHHHHHH-CCCeeEEe--CCHHHHHHHHHHHH
Confidence 88999998774 22233333211 11234566776676 787 3444 57899999999886
No 431
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=30.25 E-value=1.3e+02 Score=30.35 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=22.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR-GFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~~~~ 46 (479)
|||+++..|+..| +|++.|.+. |+.+.++.+
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~~ 32 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVAP 32 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEeC
Confidence 6899999887776 599999886 544545544
No 432
>PRK13604 luxD acyl transferase; Provisional
Probab=30.21 E-value=99 Score=29.66 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVIT 45 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~ 45 (479)
+...+++..|..++-.-+..+|+.|.++|+.|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 456777777777777779999999999999988774
No 433
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.07 E-value=66 Score=33.31 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 9 KKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 9 ~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
..++|+|+-.|..| .++|+.|+++|++|+..=.
T Consensus 6 ~~~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 6 QGPMVLVLGLGESG-----LAMARWCARHGARLRVADT 38 (498)
T ss_pred CCCEEEEEeecHhH-----HHHHHHHHHCCCEEEEEcC
Confidence 35689999888777 3599999999999988664
No 434
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.01 E-value=2.4e+02 Score=29.80 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=20.7
Q ss_pred ceEeccc------hhHHHHHHHhCcceeccc
Q 011687 357 FYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 357 ~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
+++.|.| .+.+.+|...++|+|++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3787877 456789999999999995
No 435
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=30.01 E-value=1.6e+02 Score=26.50 Aligned_cols=92 Identities=10% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCCHHHHH---HHHHHHHhCCCeEEEEcCCccc-cccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHH
Q 011687 21 QGHVTPMH---KLASILTSRGFEPIVITPEFIH-NQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLE 96 (479)
Q Consensus 21 ~gH~~p~l---~la~~L~~rGh~V~~~~~~~~~-~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 96 (479)
.||+.+.+ -+++.|..+|++|.+++.-... ..+.. .+...|. ....+.+.+ ...+.
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~-~A~~~g~---------------~p~e~~~~~----~~~f~ 95 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIK-RAREEGL---------------SWKEVADYY----TKEFF 95 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHH-HHHHcCC---------------CHHHHHHHH----HHHHH
Confidence 38988765 4677777789999999974311 11211 0000111 123333333 33345
Q ss_pred HHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEe
Q 011687 97 RLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAG 133 (479)
Q Consensus 97 ~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~ 133 (479)
+.++++.-+ .||..+-....-|+.++.+.+|-|+=+
T Consensus 96 ~~~~~l~i~-~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 96 EDMKALNVL-PPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHHHHcCCC-CCCcceeehhHHHHHHHHHHcCCCccE
Confidence 555555221 346666556567777777888765544
No 436
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=29.96 E-value=2.7e+02 Score=28.98 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=20.9
Q ss_pred CceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
++|++|..... ..+|+++|||++-.
T Consensus 398 ~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 398 KPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred CCCEEEecCcc---chhHhhcCCCEEEc
Confidence 89999998643 36899999999874
No 437
>PRK08322 acetolactate synthase; Reviewed
Probab=29.94 E-value=1.1e+02 Score=32.00 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=21.8
Q ss_pred ccceEeccc------hhHHHHHHHhCcceeccc
Q 011687 355 VGFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 355 ~~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
.++++.|.| .+.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 334888877 567889999999999984
No 438
>PRK09165 replicative DNA helicase; Provisional
Probab=29.93 E-value=1e+02 Score=31.89 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=32.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEcCCcccccc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSR---------------GFEPIVITPEFIHNQI 53 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~r---------------Gh~V~~~~~~~~~~~i 53 (479)
--+++...|+.|-..-++.+|...+.+ |..|.|++-+-..+.+
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 346666778999999999999888753 7889999987543333
No 439
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.92 E-value=2.8e+02 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.4
Q ss_pred EecCCCCCCHHHHHHHHHHHHhC
Q 011687 15 MVPYPAQGHVTPMHKLASILTSR 37 (479)
Q Consensus 15 ~~~~~~~gH~~p~l~la~~L~~r 37 (479)
++-.|++||..=|++|.+.|.++
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhh
Confidence 34458999999999999999765
No 440
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.90 E-value=1.4e+02 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=23.6
Q ss_pred ccCccceEeccchhHHHHHHHh----CcceecccC
Q 011687 352 HNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPV 382 (479)
Q Consensus 352 ~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~ 382 (479)
.+++ +|.-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 3555 9999999999999864 778887765
No 441
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.71 E-value=87 Score=27.65 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=22.8
Q ss_pred CceEEEeCCCc--ccHHHHHHHhCCCcEeE
Q 011687 107 RVACVVVDLLA--SSAIGVACRCGVPAAGF 134 (479)
Q Consensus 107 ~~D~vi~D~~~--~~~~~~A~~lgiP~v~~ 134 (479)
++|+|+.-... +.|..+|..+|+|++..
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 79999954433 66888999999999986
No 442
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.67 E-value=1.1e+02 Score=29.44 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCEEEEecCCCC--CCH--HHHHHHHHHHHhCCCeEEEE-cCCccccccccCCCCCCCeEEEeCCCCCCCCCCCCHHHHH
Q 011687 10 KNKILMVPYPAQ--GHV--TPMHKLASILTSRGFEPIVI-TPEFIHNQITSSMDPRSEISCMSIPDGLEKNEPKDFFAIE 84 (479)
Q Consensus 10 ~~~i~~~~~~~~--gH~--~p~l~la~~L~~rGh~V~~~-~~~~~~~~i~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~ 84 (479)
...|++.+.++. -.+ .-+.+|++.|.++|+++.++ +++.-++..++ +. ...+.. +
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~-------i~-~~~~~~---~--------- 238 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAER-------IA-EALPGA---V--------- 238 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHH-------HH-hhCCCC---e---------
Confidence 345667665433 122 35668999998889998887 43331122221 10 001100 0
Q ss_pred HHHHHhchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEc
Q 011687 85 KVIENIMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFW 135 (479)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~ 135 (479)
+ .....+.++..-+. +.|++|+. ..+.+++|..+|+|++.+.
T Consensus 239 --l--~g~~sL~el~ali~---~a~l~I~~--DSgp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 239 --V--LPKMSLAEVAALLA---GADAVVGV--DTGLTHLAAALDKPTVTLY 280 (319)
T ss_pred --e--cCCCCHHHHHHHHH---cCCEEEeC--CChHHHHHHHcCCCEEEEE
Confidence 0 01112333443332 68999976 3467899999999999874
No 443
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=29.64 E-value=70 Score=30.40 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcccc---cccc--CC-CCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHH-HH
Q 011687 25 TPMHKLASILTSRGFEPIVITPEFIHN---QITS--SM-DPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHL-ER 97 (479)
Q Consensus 25 ~p~l~la~~L~~rGh~V~~~~~~~~~~---~i~~--~~-~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~ 97 (479)
.+-+.+++.|.+.|++|.++..+.... .+.. .. ....+.+++.+|-....+. ..+..........+ ++
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~-----~~i~~~~~~~~~~l~~~ 85 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHD-----GKVATVFSNEKVVLTPE 85 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCC-----ceEecccccCCccccHH
Confidence 567889999999999999998762211 1100 00 0012344444442222110 00000001111122 34
Q ss_pred HHHHhhccCCceEEEeCCCcccHHH-HHHHhCCCcEeE
Q 011687 98 LINKINEDGRVACVVVDLLASSAIG-VACRCGVPAAGF 134 (479)
Q Consensus 98 ~l~~l~~~~~~D~vi~D~~~~~~~~-~A~~lgiP~v~~ 134 (479)
+++++ ++..++.......-.. .|+..||+++-+
T Consensus 86 ~l~~~----~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 86 LLEST----KGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred HHHhc----CCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 66666 5666666655544444 999999999963
No 444
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.62 E-value=3.6e+02 Score=23.23 Aligned_cols=98 Identities=14% Similarity=-0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcc-cccc-ccCCCCCCCeEEEeCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHh
Q 011687 25 TPMHKLASILTSRGFEPIVITPEFI-HNQI-TSSMDPRSEISCMSIPDGLEKNEPKDFFAIEKVIENIMPIHLERLINKI 102 (479)
Q Consensus 25 ~p~l~la~~L~~rGh~V~~~~~~~~-~~~i-~~~~~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 102 (479)
.-+..+.+...++|.+|.+++...- .+.+ +.....++++.+.-...+.. -....+++++.+
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-----------------~~~~~~~i~~~I 97 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-----------------DEEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-----------------ChhhHHHHHHHH
Confidence 3445666666678999999998641 1111 11123456777764443322 111123344444
Q ss_pred hccCCceEEEeCCCcc----cHHHHHHHhCCCcEeEcchhHHH
Q 011687 103 NEDGRVACVVVDLLAS----SAIGVACRCGVPAAGFWPAMLAT 141 (479)
Q Consensus 103 ~~~~~~D~vi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~ 141 (479)
.++ +||+|++-.-++ +.....+.++.+ +.++...+..
T Consensus 98 ~~~-~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 98 NAS-GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHc-CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 333 999999887554 455667777787 5554444433
No 445
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.58 E-value=1.1e+02 Score=31.19 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHN 51 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~ 51 (479)
+..|+|+..++.|-..-+..||..|.++|++|.+++.+.++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 567888888899999999999999999999999999876544
No 446
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.58 E-value=93 Score=29.87 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=37.9
Q ss_pred cccCccceEeccchhHHHHHHHh----CcceecccCccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 351 QHNAVGFYLTHCGWNSTMEAIQS----GKRLLCYPVAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 351 ~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
..+++ +|+=||=||++.|... ++|++.+-.. .+|. +..++.+++.+++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF-Lt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF-LTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc-cccCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999775 7788776432 1221 1225678888888888844
No 447
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=29.57 E-value=67 Score=29.89 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.3
Q ss_pred CEEEEecCC---CCCCHHHHHHHHHHHHhCCCeEEEEcCCccc
Q 011687 11 NKILMVPYP---AQGHVTPMHKLASILTSRGFEPIVITPEFIH 50 (479)
Q Consensus 11 ~~i~~~~~~---~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~ 50 (479)
||.+|++.| +-|-=.-..+|+..|..||++|+.+=-+.+.
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence 578888865 4466677889999999999999998766543
No 448
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=29.56 E-value=6.2e+02 Score=25.76 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHHhC-CCeEEEEcCCccccccccCCCCCCCeEEEeCCC-CCCC---------------CCCCCHHHHHHHHHH
Q 011687 27 MHKLASILTSR-GFEPIVITPEFIHNQITSSMDPRSEISCMSIPD-GLEK---------------NEPKDFFAIEKVIEN 89 (479)
Q Consensus 27 ~l~la~~L~~r-Gh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~-~l~~---------------~~~~~~~~~~~~~~~ 89 (479)
+-.+++.+.++ |.++++.++...++.++. ..|-+..+-. ++.. ....+...+++.++.
T Consensus 45 v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g-----ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRt 119 (437)
T cd05298 45 VAEAVKILFKENYPEIKFVYTTDPEEAFTD-----ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRS 119 (437)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCHHHHhCC-----CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhh
Confidence 45666666553 677777777665555655 5555555432 2221 022355666666653
Q ss_pred hchHHHHHHHHHhhccCCceEEEeCCCcccHH---HHHHHh-CCCcEeEcchhHHHHHH
Q 011687 90 IMPIHLERLINKINEDGRVACVVVDLLASSAI---GVACRC-GVPAAGFWPAMLATYCL 144 (479)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~---~~A~~l-giP~v~~~~~~~~~~~~ 144 (479)
. ..+.++.+.+++. .||.++....-++.. .+.+.+ +++++.++.++......
T Consensus 120 -i-p~~~~i~~~i~~~-~pda~lin~tNP~~~vt~~~~~~~~~~kviGlC~~~~~~~~~ 175 (437)
T cd05298 120 -I-GPMIELIDDIEKY-SPDAWILNYSNPAAIVAEALRRLFPNARILNICDMPIAIMDS 175 (437)
T ss_pred -H-HHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHCCCCCEEEECCcHHHHHHH
Confidence 1 2344455554333 788888765445543 344444 58899999888766544
No 449
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.52 E-value=76 Score=29.15 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=26.9
Q ss_pred cCCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 4 MMCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 4 ~~~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
||..++.+++++. |+.|.+ -..+++.|.++||+|+.+...
T Consensus 5 ~~~~~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 5 LLKPLDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred HhhccCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3344445666654 344555 367899999999999887753
No 450
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.51 E-value=75 Score=27.59 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHH-HhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCCC-------------CCC--------CCCCC
Q 011687 22 GHVTPMHKLASIL-TSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPDG-------------LEK--------NEPKD 79 (479)
Q Consensus 22 gH~~p~l~la~~L-~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~~-------------l~~--------~~~~~ 79 (479)
+.+.-.+..|+.| .+.|.+|.+.-... ...+.+. .++..+.++.. ... +...+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~t-a~~lr~~----~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~ 91 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGT-AELLRKH----VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPG 91 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHH-HHHHHCC-----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCC
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHH-HHHHHHh----CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHH
Confidence 5677788999999 78999998887753 3445431 23444444411 000 01122
Q ss_pred HHHHHHHHHH--------hchHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcchhH
Q 011687 80 FFAIEKVIEN--------IMPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPAML 139 (479)
Q Consensus 80 ~~~~~~~~~~--------~~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 139 (479)
...+..+.. .-...++..++++... +.|+||.+.. ...+|+++|+|++.+.++..
T Consensus 92 -~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~-G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 92 -LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE-GVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp -HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT-T--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred -HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc-CCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 222222222 1233556667666555 7999999963 47899999999999866543
No 451
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=29.44 E-value=89 Score=29.15 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=30.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
+.|.+..=||-|-..-+..||..|+++|++|.++=.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 566676557779999999999999999999999844
No 452
>PRK04148 hypothetical protein; Provisional
Probab=29.42 E-value=1e+02 Score=25.47 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
.++++.+..| .| ..+|..|++.||+|+.+=...
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 4788888877 43 246888889999999887643
No 453
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=29.30 E-value=55 Score=33.51 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=34.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
.++|++...|+.+ .+=...|++.|.++|++|.++.++...+.+.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 4677777666555 4578899999999999999999987655554
No 454
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.30 E-value=1.1e+02 Score=28.71 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=35.9
Q ss_pred cCccceEeccchhHHHHHHHh-----CcceecccC-ccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHHhcC
Q 011687 353 NAVGFYLTHCGWNSTMEAIQS-----GKRLLCYPV-AGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKLKED 421 (479)
Q Consensus 353 ~~~~~~I~HgG~~s~~eal~~-----GvP~l~~P~-~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~vl~~ 421 (479)
+++ +|+=||=||++.|+.. .+|++.+-. . .+|. +...+.+++.+++++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G--------------~lGF-L~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD--------------QLGF-YCDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC--------------CCeE-cccCCHHHHHHHHHHHHcC
Confidence 455 9999999999999875 456555443 1 1222 2346778888888888844
No 455
>PRK06270 homoserine dehydrogenase; Provisional
Probab=29.26 E-value=2.9e+02 Score=26.93 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=38.9
Q ss_pred ehHHhhcccCccceEe------ccc---hhHHHHHHHhCcceec---ccCccchhhHHHHHHHHhcceeeeC
Q 011687 345 PQLKVLQHNAVGFYLT------HCG---WNSTMEAIQSGKRLLC---YPVAGDQFINCAYIVKMWKIGIRVN 404 (479)
Q Consensus 345 pq~~lL~~~~~~~~I~------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~nA~rv~~~~Gvg~~~~ 404 (479)
...++|.++++..+|- |+| ..-+.+||.+|+++++ -|....-....+..++ .|+.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 4566776655544665 553 5567899999999999 4776544444445556 67776653
No 456
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=29.16 E-value=1.8e+02 Score=19.43 Aligned_cols=39 Identities=3% Similarity=-0.003 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHHHHcccccCCCchhHHHHHHHHHHHhhhcC
Q 011687 420 EDSEMKHRLMNLYMRTMGDDGARARVMNNLTGFVDDLSKLTRN 462 (479)
Q Consensus 420 ~~~~~~~~a~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 462 (479)
+-+.-.+.+.++.+++.. |=|+-+++....+.+...+..
T Consensus 9 tHeeQQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe~~~~ 47 (51)
T PF03701_consen 9 THEEQQQAVERIQELMAQ----GMSSGEAIAIVAQEIREEHQG 47 (51)
T ss_pred CHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888 567778888888888776654
No 457
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.14 E-value=93 Score=23.29 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=28.0
Q ss_pred CEEEEecCCCC--CCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQ--GHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~--gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
-.++++|.+.. .+..-...+++.|...|.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46788887653 4667788999999999999988554
No 458
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.13 E-value=55 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCC
Q 011687 18 YPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIP 69 (479)
Q Consensus 18 ~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~ 69 (479)
.|+.|++- ..|+++|.++||+|+.++... +..++ ..+++.+...
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~--~~~~~----~~~~~~~~~d 47 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSP--SKAED----SPGVEIIQGD 47 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSG--GGHHH----CTTEEEEESC
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCc--hhccc----ccccccceee
Confidence 45666654 458999999999999999864 33331 2677776443
No 459
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.07 E-value=1.2e+02 Score=22.23 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVIT 45 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~ 45 (479)
+++...++.|--.-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666778999999999999999999998887
No 460
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=29.06 E-value=2.4e+02 Score=24.09 Aligned_cols=100 Identities=15% Similarity=0.025 Sum_probs=52.2
Q ss_pred chhhhhhhcCCCCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEE-ee-
Q 011687 266 DKSCIDWLDNQKPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVV-PW- 343 (479)
Q Consensus 266 ~~~l~~~l~~~~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~-~~- 343 (479)
..++.++|.+. +...++-|. ...-....++..+.+.+++=++..... ....+ ....+. ++
T Consensus 20 A~~lg~~La~~---g~~lv~Gg~------~GlM~a~a~ga~~~gg~viGVlp~~l~--~~~~~-------~~~~i~~~~~ 81 (159)
T TIGR00725 20 AYRLGKELAKK---GHILINGGR------TGVMEAVSKGAREAGGLVVGILPDEDF--AGNPY-------LTIKVKTGMN 81 (159)
T ss_pred HHHHHHHHHHC---CCEEEcCCc------hhHHHHHHHHHHHCCCeEEEECChhhc--cCCCC-------ceEEEECCCc
Confidence 34566777633 245555333 344555665665556655444432210 00000 112222 33
Q ss_pred eehHHhhcccCccceEeccchhHHHH---HHHhCcceecccCc
Q 011687 344 APQLKVLQHNAVGFYLTHCGWNSTME---AIQSGKRLLCYPVA 383 (479)
Q Consensus 344 ~pq~~lL~~~~~~~~I~HgG~~s~~e---al~~GvP~l~~P~~ 383 (479)
.+...++...+-..++--||.||.-| ++.+++|+++++..
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 34555554333234666788888655 58899999998854
No 461
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.02 E-value=54 Score=28.59 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFIHNQIT 54 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~~~~i~ 54 (479)
...++++..+|.|-..-..++++++.++|+.|.|+......+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 456888888888888889999999999999999998865544444
No 462
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=28.90 E-value=97 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=31.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
..|+|+.=||-|-..-+..||..|+++|++|.++=-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 5677775578899999999999999999999988554
No 463
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.69 E-value=4.9e+02 Score=27.59 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=34.7
Q ss_pred eEeccchhHHHHH--HHhCcceecccCccchhhHHHHHHHHhcce-eeeCCCCHHHHHHHHHHHh
Q 011687 358 YLTHCGWNSTMEA--IQSGKRLLCYPVAGDQFINCAYIVKMWKIG-IRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 358 ~I~HgG~~s~~ea--l~~GvP~l~~P~~~DQ~~nA~rv~~~~Gvg-~~~~~~~~~~i~~~i~~vl 419 (479)
+++.||+|.+... +.+|-+....-+ ....+.+..++- +|+- .++ -+.++|.+++++.+
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~~~-~~~~d~~~la~a-~G~~~~~v--~~~~el~~al~~a~ 530 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEVHL-GETPDFVKLAES-YGVKADRV--EKPDEIKEALKEAI 530 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCcccccC-CCCCCHHHHHHH-CCCeEEEE--CCHHHHHHHHHHHH
Confidence 8899999876533 334443222111 113456666666 7652 222 67899999998876
No 464
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=28.54 E-value=1.2e+02 Score=28.74 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEeccchhHHHHHH
Q 011687 292 PIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLTHCGWNSTMEAI 371 (479)
Q Consensus 292 ~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal 371 (479)
..+++..+.+.+|+..-..+.||.+.++.. -.++.++++...+-++|.. ||=..-..+..-++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g---------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l 107 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG---------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHLAL 107 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC---------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHH
Confidence 345666788999999999999999987631 1223344444444455555 55555555555554
Q ss_pred Hh--Ccceeccc
Q 011687 372 QS--GKRLLCYP 381 (479)
Q Consensus 372 ~~--GvP~l~~P 381 (479)
+. |++.+-=|
T Consensus 108 ~~~~g~~t~hGp 119 (282)
T cd07025 108 YAKTGLVTFHGP 119 (282)
T ss_pred HHhcCceEEECc
Confidence 43 44443333
No 465
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=28.46 E-value=1e+02 Score=28.15 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=29.4
Q ss_pred EEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 12 KILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 12 ~i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.|+|+.. |+-|=..-...||..|+++|++|.++=-+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4555554 67799999999999999999999998543
No 466
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=28.40 E-value=3.4e+02 Score=24.33 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=33.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCcc
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEFI 49 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~~ 49 (479)
.|-|+|=..-+.|-..-+-.|++.|.++|++|++.-.|..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4666676677889999999999999999999998887754
No 467
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.34 E-value=51 Score=30.06 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 011687 27 MHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 27 ~l~la~~L~~rGh~V~~~~~ 46 (479)
-.++|+.|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 35889999999999998854
No 468
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=28.24 E-value=29 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.9
Q ss_pred CceEEE-eCCCc-ccHHHHHHHhCCCcEeEcchhHHH
Q 011687 107 RVACVV-VDLLA-SSAIGVACRCGVPAAGFWPAMLAT 141 (479)
Q Consensus 107 ~~D~vi-~D~~~-~~~~~~A~~lgiP~v~~~~~~~~~ 141 (479)
.||+|| .|+.. .-+..=|.++|||.|.+..+..-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 688877 66655 667888999999999997764333
No 469
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=28.20 E-value=1.3e+02 Score=26.09 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 6 CTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 6 ~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
+.+.+..+.|+...+.|-..-+..|+..|..+|++|-.+-+
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 33334456666667889999999999999999999877765
No 470
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=28.13 E-value=2.8e+02 Score=29.15 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=23.0
Q ss_pred cccCccceEeccc------hhHHHHHHHhCcceeccc
Q 011687 351 QHNAVGFYLTHCG------WNSTMEAIQSGKRLLCYP 381 (479)
Q Consensus 351 ~~~~~~~~I~HgG------~~s~~eal~~GvP~l~~P 381 (479)
..+.+ ++.|.| .+.+.+|...++|+|++.
T Consensus 63 gkpgv--~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 63 GKPSA--CMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CCCeE--EEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 34455 888888 467889999999999984
No 471
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.08 E-value=99 Score=28.97 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=30.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
++|.|+.=||-|-..-+..||..|+++|++|.++=-
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~ 37 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGC 37 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEec
Confidence 467777557779999999999999999999999844
No 472
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.05 E-value=97 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCeEEEEcC
Q 011687 29 KLASILTSRGFEPIVITP 46 (479)
Q Consensus 29 ~la~~L~~rGh~V~~~~~ 46 (479)
+||+++++.|+.|.-..-
T Consensus 23 ala~ef~~~G~~V~AtaR 40 (289)
T KOG1209|consen 23 ALAKEFARNGYLVYATAR 40 (289)
T ss_pred HHHHHHHhCCeEEEEEcc
Confidence 789999999999875543
No 473
>PLN00016 RNA-binding protein; Provisional
Probab=28.02 E-value=69 Score=31.70 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCEEEEecC--CCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVPY--PAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~~--~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.++|+++.. |+.|.+- ..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 467777622 3444443 56789999999999999864
No 474
>PRK12744 short chain dehydrogenase; Provisional
Probab=27.94 E-value=1.1e+02 Score=28.12 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|.++++.++.| =-..+|+.|+++|++|.+++.
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 45555544443 346789999999999777653
No 475
>PRK05246 glutathione synthetase; Provisional
Probab=27.93 E-value=65 Score=31.03 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=30.7
Q ss_pred CEEEEecCCC---CCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPA---QGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~---~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|||+|+.-|- .-..+.+..|+++-+++||+|.++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 7888888642 2455777899999999999999999964
No 476
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.90 E-value=62 Score=31.32 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=26.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
|+|.|+-.|..| ..+|..|++.||+|++....
T Consensus 5 m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 789999777666 46888999999999999874
No 477
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.82 E-value=1.1e+02 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=27.8
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 14 LMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 14 ~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+++..|..+.-.-+..+++.|+++|+.|..+..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45555666677789999999999999999996543
No 478
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=27.81 E-value=79 Score=29.59 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=24.6
Q ss_pred CcEEEEEeCCccccCC-HHHHHHHHHHHHhC--CCCeEEEEcCC
Q 011687 279 NSVIYISFGSWVSPIG-EEKVKTLALTLEAL--GLPFIWVLGFA 319 (479)
Q Consensus 279 ~~~Vyvs~Gs~~~~~~-~~~~~~l~~al~~~--~~~~iw~~~~~ 319 (479)
|.++++|||| ..... ...+..+-+.+++. ++.+-|++.+.
T Consensus 1 KAIllvsFGT-s~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGT-SYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE----S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 3578999999 54443 44777888888764 67788888753
No 479
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.79 E-value=74 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEE
Q 011687 12 KILMVPYPAQGHVTPMHKLASILTSR-GFEPIV 43 (479)
Q Consensus 12 ~i~~~~~~~~gH~~p~l~la~~L~~r-Gh~V~~ 43 (479)
.++.++.-+..|..-.+++|+.|.+. |.+|.+
T Consensus 3 VfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 3 VFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 45566667789999999999999999 999874
No 480
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=27.77 E-value=89 Score=30.97 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=31.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
.-+++...|+.|--.-++.++..++..|.+|.|++.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 34555666788999999999999999999999998764
No 481
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=27.66 E-value=97 Score=27.67 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+.||.+=..|+-|-.+.|+.=|..|.++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 56888888899999999999999999999999987654
No 482
>PRK03094 hypothetical protein; Provisional
Probab=27.65 E-value=53 Score=24.36 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 011687 27 MHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 27 ~l~la~~L~~rGh~V~~~~~~ 47 (479)
+-.|.+.|.++||+|.=+-.+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 346899999999999877553
No 483
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=27.65 E-value=90 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=24.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
|++++.-.| ++- ..||..|+..||+|++.....
T Consensus 2 ~~~~i~GtG---niG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTG---NIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccC---hHH--HHHHHHHHhCCCeEEEecCCC
Confidence 566665444 332 578999999999999997743
No 484
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=27.52 E-value=1e+02 Score=24.49 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=30.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 13 ILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 13 i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
++....++..|.....-++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 46667788899999999999999999999999763
No 485
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.46 E-value=1.1e+02 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=30.2
Q ss_pred CEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVP-YPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~-~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+|+.++- .|..--++|..-++...+..|+||+++.+-
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4444444 567789999999999999999999999983
No 486
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.31 E-value=5.3e+02 Score=26.99 Aligned_cols=117 Identities=12% Similarity=-0.021 Sum_probs=58.6
Q ss_pred EEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCccceEe
Q 011687 281 VIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWVLGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAVGFYLT 360 (479)
Q Consensus 281 ~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~ 360 (479)
.-|++.|. .+.+.-..=..|-.++..-+.+++..+|.+....-..++.--...+-++.+ .+++
T Consensus 392 ~~~~~~~~-~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~i----------------vV~N 454 (548)
T PRK08978 392 ENFITSSG-LGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKI----------------VLLD 454 (548)
T ss_pred CeEEeCCc-hhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEE----------------EEEe
Confidence 34454333 233333333445555665567788777754321111222111110122322 2888
Q ss_pred ccchhHHHHH--HHhCcceecccCcc-chhhHHHHHHHHhcce-eeeCCCCHHHHHHHHHHHh
Q 011687 361 HCGWNSTMEA--IQSGKRLLCYPVAG-DQFINCAYIVKMWKIG-IRVNGFGKRDIEDGLKKLK 419 (479)
Q Consensus 361 HgG~~s~~ea--l~~GvP~l~~P~~~-DQ~~nA~rv~~~~Gvg-~~~~~~~~~~i~~~i~~vl 419 (479)
.||+|.+... ..++.+.. .... +.++.+...+- +|+- .++ -+.++|.+++++.+
T Consensus 455 N~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~la~a-~G~~~~~v--~~~~el~~al~~a~ 512 (548)
T PRK08978 455 NQRLGMVRQWQQLFFDERYS--ETDLSDNPDFVMLASA-FGIPGQTI--TRKDQVEAALDTLL 512 (548)
T ss_pred CCccHHHHHHHHHHhCCcce--ecCCCCCCCHHHHHHH-CCCeEEEE--CCHHHHHHHHHHHH
Confidence 9999876432 22332211 1111 34667776666 7653 333 66888999988886
No 487
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=27.31 E-value=2.4e+02 Score=28.23 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeE
Q 011687 95 LERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGF 134 (479)
Q Consensus 95 l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~ 134 (479)
+.+.+++. +||++|.... ...+|+++|+|++..
T Consensus 347 ~~~~~~~~----~pdl~ig~~~---~~~~a~~~gip~~~~ 379 (406)
T cd01967 347 LEELVEKL----KPDLILSGIK---EKYVAQKLGIPFLDL 379 (406)
T ss_pred HHHHHHhc----CCCEEEeCCc---chHHHHhcCCCEEec
Confidence 34445555 8999998863 467889999999875
No 488
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=27.26 E-value=4.7e+02 Score=30.15 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.5
Q ss_pred CCCEEEEecCCCC--CC----HHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 9 KKNKILMVPYPAQ--GH----VTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 9 ~~~~i~~~~~~~~--gH----~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
..+||+++..|.. |. =+.++.++++|++.||+|.++...
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 3568888876643 33 246789999999999999988764
No 489
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.23 E-value=1e+02 Score=30.73 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=30.2
Q ss_pred CCE-EEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 10 KNK-ILMVPY-PAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 10 ~~~-i~~~~~-~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
+++ |.|... ||-|-..-+..||..|+++|++|.++=.+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344 444443 67799999999999999999999998654
No 490
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=27.19 E-value=1e+02 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=23.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.|.++++.++.| --..+++.|+++|++|+++...
T Consensus 10 ~k~vlVtGas~g---iG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 10 GKVAVITGGGGV---LGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEeCC
Confidence 355666644432 3478899999999999887753
No 491
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=27.18 E-value=3.1e+02 Score=28.99 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=20.9
Q ss_pred cceEeccchh------HHHHHHHhCcceeccc
Q 011687 356 GFYLTHCGWN------STMEAIQSGKRLLCYP 381 (479)
Q Consensus 356 ~~~I~HgG~~------s~~eal~~GvP~l~~P 381 (479)
+.++.|.|-| .+.+|...++|+|++.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388888844 6679999999999995
No 492
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.12 E-value=1.1e+02 Score=28.28 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=24.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
.+.++++.++. .--.++++.|+++|++|++....
T Consensus 6 ~k~vlItGas~---gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 6 GKVAIVTGGAT---LIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCEEEEECCCC---hHHHHHHHHHHHCCCEEEEEeCC
Confidence 35556664443 24578899999999999888653
No 493
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=27.08 E-value=68 Score=30.41 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=27.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCc
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPEF 48 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~~ 48 (479)
+||.|+-.|..| .++|+.|.++||+|++.--..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 578888888776 478999999999999998653
No 494
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.92 E-value=80 Score=27.40 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=20.9
Q ss_pred CceEEEeCCCccc--HHHHHHHhCCCcEeEc
Q 011687 107 RVACVVVDLLASS--AIGVACRCGVPAAGFW 135 (479)
Q Consensus 107 ~~D~vi~D~~~~~--~~~~A~~lgiP~v~~~ 135 (479)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654322 3344578999998874
No 495
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.78 E-value=76 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 011687 27 MHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 27 ~l~la~~L~~rGh~V~~~~~~ 47 (479)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367788999999999999764
No 496
>PRK12827 short chain dehydrogenase; Provisional
Probab=26.67 E-value=1.1e+02 Score=27.66 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 10 KNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 10 ~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
.|++++. |+.|.+- ..+|+.|+++||+|+++..
T Consensus 6 ~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 3555443 4445553 5889999999999988653
No 497
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.66 E-value=4.3e+02 Score=27.62 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=62.1
Q ss_pred CCHHHHHHHH-HHHHhCCCeEEEEcCCccccccccCCCCCCCeEEEeCCC-CCCC------------C----CCCCHHHH
Q 011687 22 GHVTPMHKLA-SILTSRGFEPIVITPEFIHNQITSSMDPRSEISCMSIPD-GLEK------------N----EPKDFFAI 83 (479)
Q Consensus 22 gH~~p~l~la-~~L~~rGh~V~~~~~~~~~~~i~~~~~~~~g~~~~~i~~-~l~~------------~----~~~~~~~~ 83 (479)
|++.-.+.+| +.+.+.|++|.+.-... ...+.+. ..+.++.++- +++- . ...+...-
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG~t-a~~i~~~----~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~ 111 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGGSN-GAYLKSR----LSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPA 111 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECchH-HHHHHHh----CCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHH
Confidence 7777788888 44767789988887753 3445431 1234444431 1110 0 11111111
Q ss_pred HHHHHHh-----------chHHHHHHHHHhhccCCceEEEeCCCcccHHHHHHHhCCCcEeEcch
Q 011687 84 EKVIENI-----------MPIHLERLINKINEDGRVACVVVDLLASSAIGVACRCGVPAAGFWPA 137 (479)
Q Consensus 84 ~~~~~~~-----------~~~~l~~~l~~l~~~~~~D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 137 (479)
.+.+.+. .....+..++++++. ++++||.|. .+..+|+++|++.|.+.+.
T Consensus 112 ~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~-G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 112 LRRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR-GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHhCCceEEEEecCHHHHHHHHHHHHHC-CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 2222211 123445566666554 899999997 3478999999999998764
No 498
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.61 E-value=1.5e+02 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcC
Q 011687 5 MCTKKKNKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITP 46 (479)
Q Consensus 5 ~~~~~~~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~ 46 (479)
|..++.+++++ + |+.|. --..+|+.|.++||+|.++..
T Consensus 2 ~~~~~~~~vlI-t-Ga~g~--iG~~la~~l~~~G~~v~~~~r 39 (250)
T PRK12939 2 ASNLAGKRALV-T-GAARG--LGAAFAEALAEAGATVAFNDG 39 (250)
T ss_pred CCCCCCCEEEE-e-CCCCh--HHHHHHHHHHHcCCEEEEEeC
Confidence 34434455543 3 33333 346789999999999988864
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.55 E-value=1.3e+02 Score=27.19 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=23.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEcCC
Q 011687 11 NKILMVPYPAQGHVTPMHKLASILTSRGFEPIVITPE 47 (479)
Q Consensus 11 ~~i~~~~~~~~gH~~p~l~la~~L~~rGh~V~~~~~~ 47 (479)
++++ ++ |+.|.+ -..+++.|.++|++|+.+...
T Consensus 7 ~~il-It-Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVAL-VT-GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEE-Ec-CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4444 33 455665 567899999999999888764
No 500
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=26.51 E-value=4.7e+02 Score=23.35 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCcEEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEE-EcCCcCCCCChhhHhhhcCCCCceEEeeeehHHhhcccCc
Q 011687 277 KPNSVIYISFGSWVSPIGEEKVKTLALTLEALGLPFIWV-LGFAWREGLPDGYLDRVSNSRQGKVVPWAPQLKVLQHNAV 355 (479)
Q Consensus 277 ~~~~~Vyvs~Gs~~~~~~~~~~~~l~~al~~~~~~~iw~-~~~~~~~~l~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 355 (479)
..++.|-|-+|-|.+-...+++..+...... +++++.+ +..+. .+ ..++
T Consensus 24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~-grrv~liK~~kDT------Ry-----------------------~~~s 73 (234)
T KOG3125|consen 24 MTRGTIHVILGPMFSGKTTELLRRIRREIIA-GRRVLLIKYAKDT------RY-----------------------ESSS 73 (234)
T ss_pred CCCceEEEEeccccCcchHHHHHHHHHHHhc-CceEEEEEecCCc------cc-----------------------chhe
Confidence 3466899999996666777888777665543 5555333 32211 11 0234
Q ss_pred cceEeccchhHH--------------HHHHHhCcceeccc---CccchhhHHHHHHHHhcceeeeCCCCHHHHHHHHHHH
Q 011687 356 GFYLTHCGWNST--------------MEAIQSGKRLLCYP---VAGDQFINCAYIVKMWKIGIRVNGFGKRDIEDGLKKL 418 (479)
Q Consensus 356 ~~~I~HgG~~s~--------------~eal~~GvP~l~~P---~~~DQ~~nA~rv~~~~Gvg~~~~~~~~~~i~~~i~~v 418 (479)
++||.|.+-. .+++...|-+|.+- ++.||..-.+-+.+-.|.-+.+..++.+=.++.+..+
T Consensus 74 --i~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg~i 151 (234)
T KOG3125|consen 74 --IVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFKRKPFGAI 151 (234)
T ss_pred --eEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchhhCcchhh
Confidence 7888886222 23455567777775 5679999998886645766666555544444444444
Q ss_pred h
Q 011687 419 K 419 (479)
Q Consensus 419 l 419 (479)
+
T Consensus 152 l 152 (234)
T KOG3125|consen 152 L 152 (234)
T ss_pred h
Confidence 4
Done!