BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011688
(479 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera]
gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/503 (77%), Positives = 438/503 (87%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGGL++LKGL KLESLNI C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL LNLNR L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315
Query: 241 SDDGCEKFSR------------------------LTNLESLNLDSCGIGDEGLVNLTGLC 276
SDDGCE F+R LTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCK
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT NDIK+LQS+DLPNLVSFRPE
Sbjct: 556 VTVNDIKKLQSKDLPNLVSFRPE 578
>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Vitis vinifera]
gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]
Length = 578
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/503 (72%), Positives = 421/503 (83%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
SD GCEKFS LTNLESLNLDSC I DEGL NLTGL
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAA+TSLTGLTHLDLFGARI+D+G LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HLKPLKNL SL+LESCK
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I++LQS LPNLVSFRPE
Sbjct: 556 VTASEIRKLQSTALPNLVSFRPE 578
>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]
Length = 578
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/503 (74%), Positives = 427/503 (84%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL G+ PGVND W+DVI+SQGSS+L
Sbjct: 76 MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL++L++CSNLQSL+ NFC ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM FA L+NL++LDLE+C IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
+DDG E+FS LTNLESLNLDSC I D+GLVNL L
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA+LT L GLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHLK LKNL+ LTLE+C+
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACR 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 556 VSASDIKKLQSTDLPNLVSFRPE 578
>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]
Length = 577
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/502 (76%), Positives = 418/502 (83%), Gaps = 24/502 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSRLTN------------------------LESLNLDSCGIGDEGLVNLTGLC 276
SD+GC+K SRL N LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCK
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCK 554
Query: 457 VTANDIKRLQSRDLPNLVSFRP 478
VTANDIK+L+S LPNLVSFRP
Sbjct: 555 VTANDIKKLKSIYLPNLVSFRP 576
>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 585
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/511 (72%), Positives = 410/511 (80%), Gaps = 32/511 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314
Query: 233 LNLNRCQLSDDGCEKFSRL------------------------TNLESLNLDSCGIGDEG 268
LNLNRC +SD GCE+FSRL T LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L NL G L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNLDA QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
VK+IK+LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLR
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLR 554
Query: 449 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
SLTLESCKVTANDIK+ + LPNLVSFRPE
Sbjct: 555 SLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585
>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]
Length = 580
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/503 (71%), Positives = 424/503 (84%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78 MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS+VTDSGL LK CSNLQ+L +N+C +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L LQ+S +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317
Query: 241 SDDGCEKFSRLTN------------------------LESLNLDSCGIGDEGLVNLTGLC 276
SD+GC+KFS LTN LESLNLDSC IGDEGL NL GL
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HLKPLKNLRSLTLESCK
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I++LQS LPNLVSFRPE
Sbjct: 558 VTASEIRKLQSDALPNLVSFRPE 580
>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa]
gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]
Length = 576
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/503 (70%), Positives = 412/503 (81%), Gaps = 25/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LT SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL LKDCSNLQ++ N+C ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AF+ L+NL LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
DDGC+KFS L NLESLNLDSC IGDEG+ NL GL
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL ALTSLTGLT LDLFGARITDSG L+ FKNL+SLEICGGGLTDAGVK+IKDL
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCK 553
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++IK+LQS +LPNL S RPE
Sbjct: 554 VTASEIKKLQSTELPNLASVRPE 576
>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]
Length = 577
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/503 (72%), Positives = 405/503 (80%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314
Query: 241 SDDGCEKFSR------------------------LTNLESLNLDSCGIGDEGLVNLTGLC 276
S GCE+FSR LT LESLNLDSC IGDEGL NL G
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSLTGLT LDLFGARITD G YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HLK LKNLR LTLESCK
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCK 554
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT NDIK+ + LPNLVSFRPE
Sbjct: 555 VTVNDIKKFKLIHLPNLVSFRPE 577
>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 578
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/503 (74%), Positives = 430/503 (85%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+N+ KLDLE+C IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CS++TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L +LNLNRC
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315
Query: 241 SDDGCEKFSRLTNL------------------------ESLNLDSCGIGDEGLVNLTGLC 276
SD GCEKFS L NL ESLNLDSC IGDEGLV+L+G+
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 556 LSANDIRKLQATDLPNLVNFRPE 578
>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 573
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/505 (71%), Positives = 404/505 (80%), Gaps = 32/505 (6%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQI N LVYSR LT SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75 MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
SVDLS SDVTD GL +L+DC +L SL+ N+C QI D L SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+AQGM AF+ L+NLVKLDLERC IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308
Query: 239 QLSDDGCEKFSRL------------------------TNLESLNLDSCGIGDEGLVNLTG 274
+SD GCE+FSRL T LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD LRKL GLSSLKSLNLDA
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QITD GLA LTSLTGLT LDLFGARITD G YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LSSL LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLES
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLES 548
Query: 455 CKVTANDIKRLQSRDLPNLVSFRPE 479
CKVTANDIK+ + LPNLVSFRPE
Sbjct: 549 CKVTANDIKKFKLIHLPNLVSFRPE 573
>gi|30684506|ref|NP_563980.2| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|23297087|gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
gi|332191234|gb|AEE29355.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 585
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/503 (74%), Positives = 426/503 (84%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSRLTNL------------------------ESLNLDSCGIGDEGLVNLTGLC 276
SD GCEKFS L NL ESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|13507547|gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/503 (74%), Positives = 425/503 (84%), Gaps = 25/503 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
L+ LQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L YLNLNRC
Sbjct: 263 LRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322
Query: 241 SDDGCEKFSRLTNL------------------------ESLNLDSCGIGDEGLVNLTGLC 276
SD GCEKFS L NL ESLNLDSC IGDEGLV+L+G+
Sbjct: 323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++LNLDAR +
Sbjct: 383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 563 LSANDIRKLQATDLPNLVNFRPE 585
>gi|356548547|ref|XP_003542662.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 578
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/503 (67%), Positives = 403/503 (80%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLTEVSLEAFRDCALQD+ LG+Y GVND WMDVI+SQG SLL
Sbjct: 76 ILPRDISQQIFNELVDSHCLTEVSLEAFRDCALQDIDLGEYVGVNDDWMDVISSQGLSLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD++GS VTD GL LKDCS+LQ+L ++C Q S+ GL+H+ GLSNLTSLS R+++++
Sbjct: 136 SVDVAGSQVTDDGLRLLKDCSSLQALTLSYCDQFSEYGLKHISGLSNLTSLSIRKSSSVK 195
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+TDSD+K +S L
Sbjct: 196 PDGMRAFSNLFNLEKLDLERCSEIHGGFVHLKGLKKLEYLNIGCCKCVTDSDIKSISELI 255
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+KLT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 256 NLKELQISNSSITDIGITYLRGLEKLTTLNVEGCNITAACLEFIHALTSLACLNLNRCGL 315
Query: 241 SDDGCEK-------------FSR-----------LTNLESLNLDSCGIGDEGLVNLTGLC 276
SDDG EK F+R LTNLE LNLDSC IGD GL NLTGL
Sbjct: 316 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKDLTNLEYLNLDSCRIGDGGLANLTGLT 375
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK L LSDT +G+SGLR++SGL LE +N+SFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 376 LLKSLVLSDTDIGNSGLRYISGLKKLEDLNVSFTTVTDNGLKRLSGLTQLKSLNLDARQI 435
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARI+D+G +LR+FKNL+SLEICGGGLTDAGVK+I+++
Sbjct: 436 TDAGLANLTSLSGLITLDLFGARISDNGTTFLRSFKNLQSLEICGGGLTDAGVKNIREIV 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLRHLKPLKNLR+LTLESCK
Sbjct: 496 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRHLKPLKNLRTLTLESCK 555
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+ IK+LQS DLPNL+SFRPE
Sbjct: 556 VTASGIKKLQSTDLPNLISFRPE 578
>gi|356562920|ref|XP_003549716.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 580
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/503 (67%), Positives = 401/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQQIFNELV S CLT++SLEAFRDCALQD+ LG+Y GV+D WMDVI+SQG SLL
Sbjct: 78 ILPRDISQQIFNELVDSHCLTQLSLEAFRDCALQDIDLGEYVGVSDDWMDVISSQGLSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+SGS VTD+GL LKDCSNLQ+L NFC Q S+ GL+H+ GLSNLTSLS R+++ +
Sbjct: 138 SVDVSGSQVTDNGLRFLKDCSNLQALTLNFCDQFSEYGLKHISGLSNLTSLSIRKSSTVK 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L NL KLDLERC+ IHGG V+LKGL KLE LNI C C+ DSDMK +S L
Sbjct: 198 PDGMRAFSNLFNLEKLDLERCSDIHGGFVHLKGLKKLEYLNIGCCKCVMDSDMKSISELI 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI YL+GL+ LT LN+EGC +TAACL+ + AL SL LNLNRC L
Sbjct: 258 NLKELQISNSSITDIGITYLRGLKMLTTLNVEGCNITAACLEFIHALASLACLNLNRCGL 317
Query: 241 SDDGCEK-------------FSR-----------LTNLESLNLDSCGIGDEGLVNLTGLC 276
SDDG EK F+R LTNLE LNLD C IGD+GL NLTGL
Sbjct: 318 SDDGFEKISGLKNLKRLSLAFNRITDACLVHLKGLTNLEYLNLDYCRIGDDGLANLTGLT 377
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK L LSDT +G+SGLRH+SGL LE +NLSFT ++D L++L+GL+ LKSLNLDARQI
Sbjct: 378 LLKSLVLSDTDIGNSGLRHISGLKKLEDLNLSFTTVTDHGLKRLSGLTQLKSLNLDARQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARI+D+G +LR+FK L+SLEICGGGLTDAGVK+I+++
Sbjct: 438 TDAGLANLTSLSGLIALDLFGARISDNGTTFLRSFKILQSLEICGGGLTDAGVKNIREIV 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNCNLTDKTLELISG+T L SLNVSNSRIT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 498 SLTQLNLSQNCNLTDKTLELISGMTALRSLNVSNSRITNEGLRYLKPLKNLRTLTLESCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++IK+LQS DLPNL+SFRPE
Sbjct: 558 VTASEIKKLQSTDLPNLISFRPE 580
>gi|357164542|ref|XP_003580088.1| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Brachypodium distachyon]
Length = 580
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 340/503 (67%), Positives = 404/503 (80%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV LTE SLEAFRDCALQD+CL +YPGV D WM+V+ASQG SLL
Sbjct: 78 MLPRDLSQQIFNELVEWSYLTEESLEAFRDCALQDICLEEYPGVKDAWMEVVASQGQSLL 137
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTDSGL LKDCSN+QSL N+C QIS+ GL+ L GLSNLTSLS ++ A+T
Sbjct: 138 SVDISCSDVTDSGLDVLKDCSNMQSLACNYCDQISEHGLKTLSGLSNLTSLSLKKCAAVT 197
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGLV+LKGL KLE+LN+++CNCITDSDMK LS LT
Sbjct: 198 AEGAKAFADLVNLVNLDLERCPKIHGGLVHLKGLRKLETLNMRYCNCITDSDMKYLSDLT 257
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YLKGL KL LNLEGC VTAACL+++S L SL LNLNRC +
Sbjct: 258 NLRELQLSCCKISDIGVSYLKGLSKLAHLNLEGCAVTAACLEAISGLASLILLNLNRCGI 317
Query: 241 SDDGCE------------------------KFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE L +LE LNLDSC IGDEGL++L GL
Sbjct: 318 YDEGCENLEGLVKLKVLNLGFNHITDACLVHLKELVSLECLNLDSCKIGDEGLLHLKGLL 377
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ LELSDT+VGS+GLRHLSGL NL+S+NLSFT ++D L+K+AGL+SLKSLNLD RQI
Sbjct: 378 QLRSLELSDTEVGSNGLRHLSGLRNLQSMNLSFTLVTDIGLKKVAGLNSLKSLNLDNRQI 437
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL LTGLTHLDLFGARITDSG LR FK L+SLE+CGG +TDAGVK+IKDL
Sbjct: 438 TDNGLAALAGLTGLTHLDLFGARITDSGTNCLRYFKELQSLELCGGLITDAGVKNIKDLK 497
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTD+TLELISGLT LVSLN+SN+R+++AGL HLK L+NLRSL+L+SCK
Sbjct: 498 ALTLLNLSQNGNLTDRTLELISGLTALVSLNLSNTRVSNAGLHHLKLLQNLRSLSLDSCK 557
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++IK++Q LPNL+S RPE
Sbjct: 558 VTASEIKKIQLASLPNLISVRPE 580
>gi|357478391|ref|XP_003609481.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355510536|gb|AES91678.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 576
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/503 (68%), Positives = 399/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRDISQ IFNELV S CLTE SL AFRDCALQD+ LG+Y GVND WMDVIASQG SLL
Sbjct: 74 ILPRDISQLIFNELVESHCLTETSLNAFRDCALQDVYLGEYLGVNDGWMDVIASQGPSLL 133
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+VD+SGS+VTD GL LKDC NLQ+L N+C Q S+ GL+HL GLSNLTSLS R++ A+T
Sbjct: 134 AVDVSGSNVTDHGLRLLKDCLNLQALTLNYCDQFSEHGLKHLSGLSNLTSLSIRKSCAVT 193
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM+AF+ L+NL KLDLERC+ IHGG V+ KGL KLESLNI C C+TDSDMK +SG
Sbjct: 194 PDGMRAFSNLVNLEKLDLERCSDIHGGFVHFKGLKKLESLNIGCCKCVTDSDMKAISGFI 253
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L LNLNRC L
Sbjct: 254 NLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALACLNLNRCGL 313
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
SDDG EKFS LT LE LNLDSC IGDEGLVNLTGL
Sbjct: 314 SDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEGLVNLTGLT 373
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKSLNLDARQI
Sbjct: 374 LLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLDARQI 433
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAGVK+I+++
Sbjct: 434 TDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIV 493
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR+L+LESCK
Sbjct: 494 SLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCK 553
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
V A DIK+L S DLPNL+SFRPE
Sbjct: 554 VNAADIKKLHSTDLPNLISFRPE 576
>gi|255583092|ref|XP_002532313.1| protein binding protein, putative [Ricinus communis]
gi|223527982|gb|EEF30065.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 350/497 (70%), Positives = 403/497 (81%), Gaps = 25/497 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S CLT+ +LEAFRDCALQD+ LG+YPGV D WMD+++SQGSSLL
Sbjct: 75 MLPRDLSQQIFNELVISHCLTDATLEAFRDCALQDILLGEYPGVKDSWMDIVSSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTD+GL L+ CS+LQ++ N C IS+ GL+H+ GL NLTSLSF+R NA+T
Sbjct: 135 SVDLSDSDVTDTGLALLQACSSLQTMILNRCDCISECGLKHISGLKNLTSLSFKRCNAVT 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ F+ L+NL KLDLERC +IHGGL +LKGL+KLESLNI+ C CI D DMK LS +T
Sbjct: 195 AEGMRGFSSLVNLEKLDLERCPQIHGGLAHLKGLLKLESLNIRCCKCIEDMDMKALSDIT 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQIS S VTD G++YLKGLQKL +LNLEGC VT ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNSNVTDLGVSYLKGLQKLIMLNLEGCNVTTACLDSISALVALTYLNLNRCNL 314
Query: 241 SDDGCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLC 276
SDDGC KFS L NLE+LNLDSC IGDEGL NLTGL
Sbjct: 315 SDDGCSKFSGLKNLKVLSLGFNNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGL- 373
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGLT LE++NLSFT ++D LR+L+GL SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTEVGSNGLRHLSGLTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQI 433
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGL HLDLFGARI+DSG YL+ FKNL+SLEICGGGLTD GVK+IKDL
Sbjct: 434 TDAGLAALTRLTGLIHLDLFGARISDSGTKYLQYFKNLQSLEICGGGLTDDGVKNIKDLV 493
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GL +LKPLKNLRSL+LESCK
Sbjct: 494 HLTVLNLSQNSNLTDKTLELISGLTELVSLNVSNSLITNEGLHYLKPLKNLRSLSLESCK 553
Query: 457 VTANDIKRLQSRDLPNL 473
VTA++I +LQS LPNL
Sbjct: 554 VTASEISKLQSTALPNL 570
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 55/251 (21%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFC-----------------IQISD-----GGLEHLRG 104
+++TD+ L+HLK NL++L+ + C +++SD GL HL G
Sbjct: 336 NNITDACLVHLKGLMNLENLNLDSCNIGDEGLANLTGLPLKSLELSDTEVGSNGLRHLSG 395
Query: 105 LSNLTSLSFRRN-----------------------NAITAQGMKAFAGLINLVKLDLERC 141
L+ L +L+ IT G+ A L L+ LDL
Sbjct: 396 LTLLENLNLSFTLVTDSGLRRLSGLLSLRSLNLDARQITDAGLAALTRLTGLIHLDLFGA 455
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNC---ITDSDMKPLSGLTNLKSLQISC-SKVTDSGI 197
G L+ L+SL I C +TD +K + L +L L +S S +TD +
Sbjct: 456 RISDSGTKYLQYFKNLQSLEI----CGGGLTDDGVKNIKDLVHLTVLNLSQNSNLTDKTL 511
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF--SRLTNLE 255
+ GL +L LN+ +T L L L +L L+L C+++ K + L NL+
Sbjct: 512 ELISGLTELVSLNVSNSLITNEGLHYLKPLKNLRSLSLESCKVTASEISKLQSTALPNLK 571
Query: 256 SLNLDSCGIGD 266
++ G+ D
Sbjct: 572 GRDMLGTGVRD 582
>gi|116310796|emb|CAH67587.1| OSIGBa0112M24.4 [Oryza sativa Indica Group]
gi|218195159|gb|EEC77586.1| hypothetical protein OsI_16540 [Oryza sativa Indica Group]
Length = 581
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 335/503 (66%), Positives = 397/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDK+LELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|115459280|ref|NP_001053240.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|113564811|dbj|BAF15154.1| Os04g0503500 [Oryza sativa Japonica Group]
gi|215678755|dbj|BAG95192.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708842|dbj|BAG94111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629150|gb|EEE61282.1| hypothetical protein OsJ_15365 [Oryza sativa Japonica Group]
Length = 581
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 334/503 (66%), Positives = 396/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE L NLE LNLDSC IGDEGL +L GL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKGLL 378
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GL+SL+SLNLD RQI
Sbjct: 379 KLRSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLNSLRSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDNGLAALTCLTGLTHLDLFGARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDK+LELIS LT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCK
Sbjct: 499 ALTLLNLSQNGNLTDKSLELISRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCK 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA +IK+LQ LPNLVS RPE
Sbjct: 559 VTAIEIKKLQLAALPNLVSVRPE 581
>gi|356550632|ref|XP_003543689.1| PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max]
Length = 565
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 351/512 (68%), Positives = 397/512 (77%), Gaps = 34/512 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG----------VNDKWMDV 51
LP D+SQ+IFN +VYS LT SL+ FRD ALQD+CLG+Y V+D WMDV
Sbjct: 54 LPPDLSQRIFNNMVYSSYLTPASLQPFRDSALQDICLGEYEYANGGGAAAAIVDDAWMDV 113
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
I+SQGSSLL +DLS SDVTD GL L C+N+ SL+ N C QISD GLE + GLSNL SL
Sbjct: 114 ISSQGSSLLHLDLSASDVTDHGLTFLGHCTNIISLNLNHCHQISDHGLECISGLSNLASL 173
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
SFRRN AI+AQG+ F+GLINLVKLDLERC IHG LV+++GL LESLN+ WCNC+ D
Sbjct: 174 SFRRNYAISAQGLNTFSGLINLVKLDLERCPGIHGSLVHIQGLTMLESLNLNWCNCLVDV 233
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
DMKPLS LTNLKSL+IS +KVTD GI++LKGLQKL LLNLEGC VT ACLDSL L +L
Sbjct: 234 DMKPLSVLTNLKSLEISFNKVTDFGISFLKGLQKLNLLNLEGCQVTTACLDSLEELPALS 293
Query: 232 YLNLNRCQLSDDGCEKFSRLTN------------------------LESLNLDSCGIGDE 267
LNL+RC LS+DGCEKFSRL N L+SLNLDSC I DE
Sbjct: 294 NLNLSRCNLSNDGCEKFSRLENLKVLNLGFNDITDACLAHLKGLTKLKSLNLDSCRIEDE 353
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GLV+L G L CLELSDT +GS+GL HLSGL+NLE INLSFT ++D L KL GLSSLK
Sbjct: 354 GLVHLAGHQQLNCLELSDTGIGSNGLHHLSGLSNLEKINLSFTFVNDSGLSKLCGLSSLK 413
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
SLNLDARQ+TDTGLA+LTSLTGLT LDLFGARITD G YL+ FKNLR LEICGG LTD
Sbjct: 414 SLNLDARQVTDTGLASLTSLTGLTELDLFGARITDFGTNYLKCFKNLRLLEICGGELTDD 473
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
GVK+IK+LSSL LNLSQNCNLTD TLELISGLT L+SLNVSNS IT+AGL+HLK LKNL
Sbjct: 474 GVKNIKELSSLKSLNLSQNCNLTDTTLELISGLTDLISLNVSNSGITNAGLQHLKTLKNL 533
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
RSL+LESCKVTAN IK+LQS DLPNLVSFRP+
Sbjct: 534 RSLSLESCKVTANGIKKLQSTDLPNLVSFRPQ 565
>gi|115447277|ref|NP_001047418.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|47497632|dbj|BAD19701.1| leucine-rich repeat-like protein [Oryza sativa Japonica Group]
gi|113536949|dbj|BAF09332.1| Os02g0613200 [Oryza sativa Japonica Group]
gi|125582867|gb|EAZ23798.1| hypothetical protein OsJ_07510 [Oryza sativa Japonica Group]
gi|215704406|dbj|BAG93840.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 330/503 (65%), Positives = 400/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE FRDCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFRDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
+GCE F L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+R+++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRVSNAGLRHLKDLQNLRSLSLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|242076388|ref|XP_002448130.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
gi|241939313|gb|EES12458.1| hypothetical protein SORBIDRAFT_06g021780 [Sorghum bicolor]
Length = 581
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 338/503 (67%), Positives = 401/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDCALQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCALQDVCLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C +IS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDKISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +IHGGL++LKGL KLE LN+++CNCITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKIHGGLIHLKGLKKLEKLNMRYCNCITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISDFGVSYLRGLHKLGHLNLEGCSVTAACLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE LT +LE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLEGLTKLKALNLGFNHITGACLIHLKDLISLECLNLDSCKIGDEGLFHLKGLI 378
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKSLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT+LTGLTHLDLFGARITDSG R FKNL+SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTNLTGLTHLDLFGARITDSGMNCFRFFKNLQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR++++GL HLKPL NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGNLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLLNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA++I +L+ LPNL+S RPE
Sbjct: 559 VTASEIDKLRLVALPNLISVRPE 581
>gi|125540271|gb|EAY86666.1| hypothetical protein OsI_08050 [Oryza sativa Indica Group]
Length = 582
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 330/503 (65%), Positives = 399/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV S LTE LE F DCALQD+ LG+YPGVND WM+V+ASQ SLL
Sbjct: 80 VLPRDLSQQIFNELVASNRLTETLLETFWDCALQDIDLGEYPGVNDAWMEVVASQRHSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S++TDSGL L+DC N+QSL N+C IS+ GL L GLSNLTSLSF+ ++ IT
Sbjct: 140 SVDISCSEITDSGLYLLRDCPNMQSLACNYCDMISEHGLGILSGLSNLTSLSFKSSDGIT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+ M+AFA L+NLV LDLERC +IHGGLV+LKGL LESLN+++CN I DSD+K LS LT
Sbjct: 200 AEAMEAFANLVNLVNLDLERCLKIHGGLVHLKGLRNLESLNMRYCNNIADSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ++C ++TD G++YL+GL KLT LNLEGCPVTAACL+++S L SL LNL+RC +
Sbjct: 260 NLKELQLACCRITDLGVSYLRGLSKLTQLNLEGCPVTAACLEAISGLASLVVLNLSRCGI 319
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
+GCE F L NLESLNLDSC +GDEGL++L GL
Sbjct: 320 YGEGCENFQGLKKLKVLNLGFNNITDDCLAHLKELINLESLNLDSCKVGDEGLLHLRGLM 379
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGSSGL+HLSGL NLESINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLKSLELSDTEVGSSGLQHLSGLRNLESINLSFTLVTDTGMKKISALNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALTSLTGLTHLDLFGARITD G + R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALTSLTGLTHLDLFGARITDYGTSCFRFFKNLESLEVCGGLITDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L LNLSQN NLTDKTLELISGLT LVSLNVSN+RI++AGLRHLK L+NLRSL+L+SC+
Sbjct: 500 ALKQLNLSQNVNLTDKTLELISGLTALVSLNVSNTRISNAGLRHLKDLQNLRSLSLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT +++K+LQ+ LPNL+S RPE
Sbjct: 560 VTTSEVKKLQATVLPNLISVRPE 582
>gi|357150116|ref|XP_003575347.1| PREDICTED: F-box/LRR-repeat protein 14-like [Brachypodium
distachyon]
Length = 582
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 327/503 (65%), Positives = 397/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQQ+FN+LV S CL E SLE FRDCAL D+CLG++PGV D WM+V+ASQ SLL
Sbjct: 80 VLPSDLSQQVFNQLVDSNCLKEASLETFRDCALHDICLGEFPGVKDAWMEVVASQRQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTDSGL L+DCSN+QSL N+C QIS+ GL L G SNLTSLSF+R++ +T
Sbjct: 140 SVDISCSEVTDSGLNLLRDCSNMQSLVCNYCDQISEHGLGVLSGFSNLTSLSFKRSDGVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+ FA L+NLV LDLERC +IHGGLV+LKGL KLES+N+++CN ITDSD+K LS LT
Sbjct: 200 AEGMRVFANLVNLVNLDLERCLKIHGGLVHLKGLRKLESINMRYCNNITDSDIKYLSDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL+GL KL LNLE CPVTAACL +S L SL LNLNRC +
Sbjct: 260 NLKELQLSSCRITDLGVSYLRGLSKLIRLNLESCPVTAACLVDISGLASLMLLNLNRCGI 319
Query: 241 SDDGCEKF------------------------SRLTNLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE F L NLE LNLDSC +GD GL++L GL
Sbjct: 320 YDEGCESFKDLKKLKVLNLGFNYITDACLVHLKELINLEFLNLDSCKVGDAGLLHLKGLV 379
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL L+ I+LSFT ++D ++K++ LSSLKS+NLD+R I
Sbjct: 380 LLKSLELSDTEVGSNGLRHLSGLRTLQRIDLSFTLVTDTGMKKISALSSLKSVNLDSRLI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAALT LTGLTHLDLFGARITD+GA+ R FKNL SLE CGG +TD GVK+IK+L
Sbjct: 440 TDVGLAALTGLTGLTHLDLFGARITDNGASCFRYFKNLESLEACGGSITDVGVKNIKELK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT LVSLNVSNSR+++AGLRHL L+NLRSLTL+SC+
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALVSLNVSNSRVSNAGLRHLNALQNLRSLTLDSCR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTAN+I++LQ+ LPNL+SFRPE
Sbjct: 560 VTANEIRKLQATALPNLISFRPE 582
>gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity to F-box protein FBL2 from Homo sapiens
gb|AF176518 and contains multiple Leucine Rich PF|00560
repeats. ESTs gb|Z34572, gb|Z34571, gb|AI100681,
gb|AI100675, gb|AA395320, gb|AI100674, gb|AA651378,
gb|AA007067, gb|T46145, gb|T22090, gb|AI995016,
gb|H36884, gb|AI995066, gb|H37061, gb|T43537 come from
this gene [Arabidopsis thaliana]
Length = 568
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 356/510 (69%), Positives = 404/510 (79%), Gaps = 56/510 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRDISQQIF+ELVYS+ LT SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ +SLLS
Sbjct: 83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct: 143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
QGM+A + L+NL KLDLE+C I GGLV+L+ L KLESLNIKWCNCITD+DM+P
Sbjct: 203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEP------ 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS-------ALGSLFYL 233
L GL KL LLNLEGC VTAACLD+L+ AL L YL
Sbjct: 257 ------------------LSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYL 298
Query: 234 NLNRCQLSDDGCEKFSRLTNL------------------------ESLNLDSCGIGDEGL 269
NLNRC SD GCEKFS L NL ESLNLDSC IGDEGL
Sbjct: 299 NLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGL 358
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
V+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL++L
Sbjct: 359 VHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTL 418
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
NLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD GV
Sbjct: 419 NLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGV 478
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRS
Sbjct: 479 KNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRS 538
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
LTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 539 LTLESCKLSANDIRKLQATDLPNLVNFRPE 568
>gi|326497793|dbj|BAJ98524.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 325/503 (64%), Positives = 394/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLP DISQQIF+ELV S LTE SLE FRDCAL D+CLG+YPGV D WM+V+ASQ SLL
Sbjct: 81 MLPSDISQQIFDELVGSNRLTEESLETFRDCALHDICLGEYPGVTDAWMEVVASQRQSLL 140
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+VTD GL L DCS++QSL N+C ++S+ G+ L G SNLTSLSF+R++ +T
Sbjct: 141 SVDISCSEVTDGGLNFLSDCSSMQSLSCNYCDRVSEHGIGVLSGFSNLTSLSFKRSDGVT 200
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM FA L+NLV LDLE C +IHGGLV++KGL KLESLN+++CN ITDSD+K LS LT
Sbjct: 201 AEGMSVFADLVNLVNLDLECCLKIHGGLVHMKGLRKLESLNMRYCNYITDSDIKYLSDLT 260
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+S ++TD G++YL GL KLT LNLE CPVTAACL+++S L SL LNLNRC +
Sbjct: 261 NLKELQLSSCRITDLGVSYLTGLSKLTHLNLESCPVTAACLEAISGLASLMLLNLNRCGI 320
Query: 241 SDDGCEKFSR------------------------LTNLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE F L NLESLNLDSC IGDEGL++L GL
Sbjct: 321 YDEGCESFEDLKKLKVLNLGFNHITDACLVHLKGLINLESLNLDSCKIGDEGLLHLKGLV 380
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT +GS+GL+HLSGL NL SINLSFT ++D ++K++ L+SLKS+NLD R I
Sbjct: 381 LLKSLELSDTAIGSNGLQHLSGLRNLHSINLSFTLVTDTGMKKISTLNSLKSVNLDNRLI 440
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL LTGLTHLDLFGAR+TD G ++LR FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 441 TDVGLAALIGLTGLTHLDLFGARVTDHGTSFLRYFKNLESLEVCGGSITDAGVKNIKDLK 500
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++AG RHLK L+NLRSLTL+SC+
Sbjct: 501 ALTLLNLSQNAKLTDKTLELISGLTALVSLNVSNSRVSNAGFRHLKALQNLRSLTLDSCR 560
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VT N++K+L++ LPNL+S RPE
Sbjct: 561 VTVNEMKKLRATALPNLISVRPE 583
>gi|226501144|ref|NP_001141453.1| uncharacterized protein LOC100273563 [Zea mays]
gi|194704638|gb|ACF86403.1| unknown [Zea mays]
gi|414586493|tpg|DAA37064.1| TPA: regulatory subunit [Zea mays]
Length = 581
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 332/503 (66%), Positives = 397/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE LT NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR++++GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|195647464|gb|ACG43200.1| regulatory subunit [Zea mays]
Length = 581
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 330/503 (65%), Positives = 395/503 (78%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDV DSG LKDCS++Q+L ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVIDSGFNLLKDCSSMQNLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE LT NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK LELSDT+VGS+GLRHLSGL NL+SINLSFT ++D L+K++GLSSLKSLNLD RQI
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSGLRNLQSINLSFTLVTDIGLKKISGLSSLKSLNLDNRQI 438
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLA+LT LTGLTHLDLFGARITDSG + R FKN++SLE+CGG +TDAGVK+IKDL
Sbjct: 439 TDTGLASLTGLTGLTHLDLFGARITDSGMSCFRFFKNIQSLEVCGGLITDAGVKNIKDLK 498
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN LTDKTLELISGLT LVSLNVSNSR+++ GL HLKPL+NLRSL+LESC+
Sbjct: 499 ALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNLGLHHLKPLQNLRSLSLESCR 558
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA+++ +L+ LPNL+S RPE
Sbjct: 559 VTASEMDKLRLVALPNLISVRPE 581
>gi|255553315|ref|XP_002517700.1| F-box/LRR-repeat protein, putative [Ricinus communis]
gi|223543332|gb|EEF44864.1| F-box/LRR-repeat protein, putative [Ricinus communis]
Length = 529
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 351/503 (69%), Positives = 386/503 (76%), Gaps = 73/503 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIFNELVYS+ L + ++EAFRDCALQDL LG+ PGVND WMDVI+SQG SLL
Sbjct: 76 MLPRDISQQIFNELVYSQRLNDATIEAFRDCALQDLHLGECPGVNDSWMDVISSQGISLL 135
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTDS GL +L+ +NL +L+F + I+
Sbjct: 136 SVDLSGSDVTDS-------------------------GLAYLKDCTNLQALNFNYCDQIS 170
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L N+ L+KLESLNIKWCNCITD+DMK LSGL
Sbjct: 171 DPG------------------------LSNISDLLKLESLNIKWCNCITDADMKYLSGLV 206
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQISCSKVTD GI+YLKGL KL LLNLEGCPVT ACLDSLSAL +L YLNLNRC L
Sbjct: 207 KLKGLQISCSKVTDVGISYLKGLHKLNLLNLEGCPVTVACLDSLSALAALLYLNLNRCHL 266
Query: 241 SDDGCEKFSRL------------------------TNLESLNLDSCGIGDEGLVNLTGLC 276
SDDGCE FS+L TNLESLNLDSC I DEGL NLTGL
Sbjct: 267 SDDGCEAFSKLGRLKVLNLGFNDISDACLVHLKGLTNLESLNLDSCRIDDEGLANLTGLR 326
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+LKCL LSDT+VGSSGLRHLSGLTNLESINLSFT I+DG +RKL+GLSSLKSLNLDARQI
Sbjct: 327 HLKCLVLSDTEVGSSGLRHLSGLTNLESINLSFTMITDGGIRKLSGLSSLKSLNLDARQI 386
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD+GLAALT+LTGLTHLDLFGARITDSG YLRNFKNL+SLEICGGGLTDAG+++IKDLS
Sbjct: 387 TDSGLAALTNLTGLTHLDLFGARITDSGTHYLRNFKNLQSLEICGGGLTDAGIRNIKDLS 446
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SL+LLNLSQNCNLTDK+LELISGLTGLVSLNVSNSRITSAGL+HLKPLKNL+SLTLESCK
Sbjct: 447 SLSLLNLSQNCNLTDKSLELISGLTGLVSLNVSNSRITSAGLQHLKPLKNLKSLTLESCK 506
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTA DIK+LQS DLP LVSFRPE
Sbjct: 507 VTATDIKKLQSTDLPQLVSFRPE 529
>gi|226505324|ref|NP_001147302.1| regulatory subunit [Zea mays]
gi|195609698|gb|ACG26679.1| regulatory subunit [Zea mays]
gi|413937767|gb|AFW72318.1| regulatory subunit isoform 1 [Zea mays]
gi|413937768|gb|AFW72319.1| regulatory subunit isoform 2 [Zea mays]
Length = 582
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 322/503 (64%), Positives = 400/503 (79%), Gaps = 24/503 (4%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
DDGCE F L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ LELSDT+VG++GL+HLSGL NL+SINLSFT ++D ++K++ L+SLKS+NLD RQI
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLRNLQSINLSFTLVTDIGVKKISVLNSLKSVNLDNRQI 439
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD GLAAL SLT LTHLDLFGA ITD+G R FKNL SLE+CGG +TDAGVK+IKDL
Sbjct: 440 TDVGLAALISLTRLTHLDLFGACITDNGTNCFRYFKNLVSLEVCGGFVTDAGVKNIKDLK 499
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LTLLNLSQN NLTDKTLELISGLT L++LNVSNSR+++AGL+HL L NLRSL+L+S +
Sbjct: 500 ALTLLNLSQNANLTDKTLELISGLTALINLNVSNSRVSNAGLKHLNDLHNLRSLSLDSTR 559
Query: 457 VTANDIKRLQSRDLPNLVSFRPE 479
VTAN++++L++ L NL+S RPE
Sbjct: 560 VTANEMRKLRATVLHNLISMRPE 582
>gi|70663921|emb|CAE02935.3| OSJNBa0014K14.7 [Oryza sativa Japonica Group]
Length = 557
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/482 (60%), Positives = 360/482 (74%), Gaps = 6/482 (1%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQ+FNELV LTE L AFRDCALQD+CL YPGV D WM+V ASQG SLL
Sbjct: 79 LLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWMEVAASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S SDVTD GL LKDC NLQSL N+C QIS+ GL+ L GLSN+TSLSF++ +A+T
Sbjct: 139 SVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFKKCSAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA ++NL LDLERC +IHGGLV+LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+SC K++D G++YL+GL KL LNLEGC VTAACL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGV 318
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL- 299
D+GCE L L+ LNL I D LV+L L NL+CL L ++G GL HL
Sbjct: 319 YDEGCEHLEGLVKLKVLNLGFNYITDACLVHLKELINLECLNLDSCKIGDEGLAHLKVFH 378
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHLDLFG 357
L++ N + + + +KL + + + + + + L+S LTGLTHLDLFG
Sbjct: 379 KTLKAENHTISLMQTSETKKLG---TFRHRSWEQWTSSSLWMVFLSSQGLTGLTHLDLFG 435
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
ARITD+G L+ FKNL+SLE+CGG +TDAGVK+IKDL +LTLLNLSQN NLTDK+LELI
Sbjct: 436 ARITDAGTNCLKYFKNLQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGNLTDKSLELI 495
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
S LT LVSLNVSNSR++++GL HLKPL+NLRSL+LESCKVTA +IK+LQ LPNLVS R
Sbjct: 496 SRLTALVSLNVSNSRVSNSGLHHLKPLQNLRSLSLESCKVTAIEIKKLQLAALPNLVSVR 555
Query: 478 PE 479
PE
Sbjct: 556 PE 557
>gi|302796665|ref|XP_002980094.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
gi|302822036|ref|XP_002992678.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300139524|gb|EFJ06263.1| hypothetical protein SELMODRAFT_162512 [Selaginella moellendorffii]
gi|300152321|gb|EFJ18964.1| hypothetical protein SELMODRAFT_419616 [Selaginella moellendorffii]
Length = 578
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 287/500 (57%), Positives = 355/500 (71%), Gaps = 24/500 (4%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LPRD++Q+I NELV ++ L+ +AF DCA+QD+ LG YPGV+D WM+VI SQ LL+
Sbjct: 77 LPRDLTQKILNELVQTQALSRELFQAFEDCAIQDIYLGYYPGVDDSWMEVIGSQKFCLLA 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VD SGS VTD G+ L+ C N++ + N C ISD L + G +NLTSLSF++N IT
Sbjct: 137 VDFSGSMVTDEGVQCLQICENVEIICMNECKYISDISLSYFTGFTNLTSLSFQKNKLITP 196
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ AGL NL LDLERC +IH GLV +KGL KLE LN+ WCNCI SDMK LSGLTN
Sbjct: 197 AGMRHLAGLPNLKHLDLERCPKIHDGLVYIKGLTKLEKLNLGWCNCIRSSDMKQLSGLTN 256
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L LQIS SKV D GI +LK L+KL +LN+EGCPVT AC+D+++ L SL LNL C +S
Sbjct: 257 LLELQISRSKVKDFGITFLKDLKKLEVLNMEGCPVTFACMDTIAGLTSLTTLNLKSCYIS 316
Query: 242 DDGCEKFSRLTNLES------------------------LNLDSCGIGDEGLVNLTGLCN 277
D GC K L NL++ LNLDSC IGD+G+ N L N
Sbjct: 317 DFGCRKLEGLGNLKNLNLSYTNVSDAGMVYLKNLKSLQFLNLDSCKIGDQGVQNFKNLVN 376
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LK L+LSD+ +G+ L L+GL+ LES+N+S T ++D L K++GL+SLKSLN+D+RQIT
Sbjct: 377 LKSLDLSDSLIGNHALNFLTGLSKLESLNISSTMVTDMGLHKISGLTSLKSLNIDSRQIT 436
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
DTGL ALTSLT LTHLDLF ARITD G LR+FK L+SLE+CGGG+TD GVK +KDL+
Sbjct: 437 DTGLMALTSLTNLTHLDLFSARITDYGIGSLRHFKKLQSLEVCGGGITDVGVKSLKDLTD 496
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT LNLSQN LTD+ LE +SGLT LVSLNV NS +T+AGL+HL PLKNL SL L+SCKV
Sbjct: 497 LTYLNLSQNGQLTDQALEALSGLTKLVSLNVGNSSVTNAGLQHLLPLKNLTSLALQSCKV 556
Query: 458 TANDIKRLQSRDLPNLVSFR 477
T I++LQ+ LPNLV R
Sbjct: 557 TLWAIQKLQASSLPNLVIVR 576
>gi|168012567|ref|XP_001758973.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689672|gb|EDQ76042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 282/502 (56%), Positives = 356/502 (70%), Gaps = 26/502 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ Q + +ELV + L+ +LE F DC+LQD+ L YPGV D W+ VI SQG SLL+
Sbjct: 81 VPRDLIQLVLDELVRRQLLSPTTLELFSDCSLQDVLLPDYPGVEDSWLQVIGSQGESLLA 140
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+S S VTD GL L+ C+NLQSL N C I+D GL L GLSNLT+LS R NN ITA
Sbjct: 141 LDISSSTVTDEGLSFLESCTNLQSLILNACESIADEGLTSLSGLSNLTTLSLRSNNMITA 200
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDL+RC I GG V LKGL LE LN+ WC + +SD+K LSGL N
Sbjct: 201 AGMQNFTHLVSLKNLDLQRCPSIQGGFVYLKGLTTLEKLNVGWCIGVRNSDIKHLSGLVN 260
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
LK LQIS SKV+DSG+A L GL KL L++EGC VT+ ++S+ L +++LN+N C L
Sbjct: 261 LKELQISRSKVSDSGLASLTGLTKLRSLSMEGCQAVTSKGMESIGGLTGVWHLNVNSCFL 320
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
D G +K LTNLE LNLDSC IGD G+ N+ GL
Sbjct: 321 HDSGFQKLEGLINLRTLNMGYNNVSNSGMGFLKGLTNLERLNLDSCKIGDHGIENVKGLV 380
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ 335
NLK L+LSDT++ S+GLR L+GL NLES+NLSFT GI+D LR +A ++SL SLNLD++Q
Sbjct: 381 NLKMLDLSDTEIESAGLRFLTGLKNLESLNLSFTGGIADSGLRTIATITSLTSLNLDSKQ 440
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
ITDTGLAALT LTGL LDLFGARITD G A LR+FK L++LE+CGGG+TDAGV+ IKDL
Sbjct: 441 ITDTGLAALTGLTGLKTLDLFGARITDYGMACLRHFKKLQTLELCGGGITDAGVRSIKDL 500
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+SLT LNLSQN LTD +L+ +SG+ LVSLN++NSR+T+AGL+HL+PL NL SL L+ C
Sbjct: 501 TSLTSLNLSQNMRLTDNSLQYLSGMKNLVSLNLANSRVTNAGLQHLRPLTNLTSLALQDC 560
Query: 456 KVTANDIKRLQSRDLPNLVSFR 477
KVT ++RLQ+ LP+L R
Sbjct: 561 KVTLPAVERLQATYLPSLTVIR 582
>gi|168057635|ref|XP_001780819.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667754|gb|EDQ54376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 564
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 273/497 (54%), Positives = 354/497 (71%), Gaps = 25/497 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+PRD+ QQ+ N+LV + L+ V+LE F DCALQD+ L YPGV D W+D+I SQG SLL+
Sbjct: 62 VPRDLIQQVLNDLVRKQLLSPVTLELFSDCALQDVLLADYPGVEDFWLDIIGSQGESLLA 121
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SGS VTD GL L+ C+NLQ+L N C ISD GL L GLSNLT+LS R +N ITA
Sbjct: 122 LDISGSPVTDDGLACLQSCTNLQTLSLNSCDHISDEGLSVLSGLSNLTTLSLRSSNLITA 181
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
GM+ F L++L LDLERC IHGG V L+GL LE LN+ WC + ++D+ L+G+ N
Sbjct: 182 AGMRNFTNLVSLKNLDLERCPLIHGGFVYLRGLTTLEKLNVGWCIGVRNADITHLAGIVN 241
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQIS SKV DSG+A LKG+ L L++EGCP+TA + +++ L +L +LN+N C L
Sbjct: 242 LKELQISRSKVNDSGVASLKGMTNLRSLSMEGCPITAQSMKTIAGLTTLCHLNINSCYLP 301
Query: 242 DDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLCN 277
D GC+K LTNLE LNLDSC +GDEG+ ++ GL N
Sbjct: 302 DSGCQKLEGLINLRTLNLGYNELTDSGMVFLKGLTNLERLNLDSCKVGDEGIKHVKGLLN 361
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQI 336
L+ L+LSD++VG+ GLR LSGL LE +NLSFT G++D L +A ++SL SLNLD++QI
Sbjct: 362 LRMLDLSDSEVGNVGLRFLSGLKKLEILNLSFTGGVTDIGLSTIATITSLTSLNLDSKQI 421
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TDTGLAALT LTGL +LDLFGA+ITD G A LR+FKNL+SLE+CGGG+TD GV IKDL+
Sbjct: 422 TDTGLAALTGLTGLKNLDLFGAKITDYGMARLRHFKNLQSLELCGGGITDVGVSSIKDLT 481
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LNLS N LTD++L+ +SG+ LVSLNV+NS++T+AGL+HL+PL L SL L+ CK
Sbjct: 482 LLTSLNLSHNLRLTDRSLQYLSGMENLVSLNVANSKVTNAGLQHLRPLTKLTSLALQGCK 541
Query: 457 VTANDIKRLQSRDLPNL 473
VT + L++ LPNL
Sbjct: 542 VTRTAVDHLKATSLPNL 558
>gi|356519278|ref|XP_003528300.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 2 [Glycine max]
Length = 529
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/503 (55%), Positives = 331/503 (65%), Gaps = 74/503 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQ IFN LVYSR LT SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75 MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AQGM AF+GL+NLVKLDLERC IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314
Query: 241 SDDGCEKFSRLTN------------------------LESLNLDSCGIGDEGLVNLTGLC 276
SD+GC+K SRL N LESLNLDSC IGDEGLVNL GL
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L CLELSDT+VGS+GL HLSGLT L ++L I+D L +L+SL + +
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVL 434
Query: 337 TDTGLAALTSLTGLTHLDLF-GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
TD G+ + L+ L L+L + +TD + L SL + +T+AG++H+K L
Sbjct: 435 TDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTL 494
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L L L ++C +T
Sbjct: 495 KNLRSLTL-ESCKVT--------------------------------------------- 508
Query: 456 KVTANDIKRLQSRDLPNLVSFRP 478
ANDIK+L+S LPNLVSFRP
Sbjct: 509 ---ANDIKKLKSIYLPNLVSFRP 528
>gi|14423508|gb|AAK62436.1|AF386991_1 Unknown protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis thaliana]
Length = 332
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 245/332 (73%), Positives = 277/332 (83%), Gaps = 25/332 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLF 231
M+PLS LTNL+SLQI CSK+TD GI+YLKGL KL LLNLEGC VTAACLD+L+AL L
Sbjct: 1 MEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLM 60
Query: 232 YLNLNRCQLSDDGCEKFSRLTNL------------------------ESLNLDSCGIGDE 267
YLNLNRC SD GCEKFS L NL ESLNLDSC IGDE
Sbjct: 61 YLNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDE 120
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GLV+L+G+ LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D LRKL+GL+SL+
Sbjct: 121 GLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+LNLDAR +TD GL+ALTSLTGLTHLDLFGARITDSG +LRN K L+SLEICGGGLTD
Sbjct: 181 TLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDT 240
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
GVK+IKDLSSLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNL
Sbjct: 241 GVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNL 300
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
RSLTLESCK++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 301 RSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 170/324 (52%), Gaps = 27/324 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ + S +TD G+ +LK + L L+ C ++ L+ L L+ L L+ R
Sbjct: 8 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 67
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G + F+ LINL L+L + LV+LKGL KLESLN+ C I D + L
Sbjct: 68 N-FSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCR-IGDEGLVHL 125
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
SG+ LKSL++S ++V +G+ +L GL L +NL VT
Sbjct: 126 SGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVT------------------- 166
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
D G K S LT+L +LNLD+ + D GL LT L L L+L ++ SG HL
Sbjct: 167 -----DSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHL 221
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDL 355
L L+S+ + G++D ++ + LSSL LNL +TD L ++ LTGL L++
Sbjct: 222 RNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNV 281
Query: 356 FGARITDSGAAYLRNFKNLRSLEI 379
+R++ SG +L+ KNLRSL +
Sbjct: 282 SNSRVSSSGLRHLKPLKNLRSLTL 305
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++LS ++V +GL HL SNL+S++ +F + ++D GL L GL++L +L+ +
Sbjct: 131 LKSLELSDTEVGSNGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARH- 188
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-------------NIK-- 163
+T G+ A L L LDL G +L+ L KL+SL NIK
Sbjct: 189 VTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDL 248
Query: 164 ---------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ +TD ++ +SGLT L SL +S S+V+ SG+ +LK L+ L L LE C
Sbjct: 249 SSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESC 308
Query: 215 PVTAACLDSLSA 226
++A + L A
Sbjct: 309 KLSANDIRKLQA 320
>gi|217074604|gb|ACJ85662.1| unknown [Medicago truncatula]
Length = 331
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 222/331 (67%), Positives = 259/331 (78%), Gaps = 24/331 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK +SG NLK LQIS S +TD GI+YL+GLQKL+ LN+EGC +TAAC + +SAL +L
Sbjct: 1 MKAISGFINLKELQISNSSITDLGISYLRGLQKLSTLNVEGCSITAACFEYISALAALAC 60
Query: 233 LNLNRCQLSDDGCEKFSRLT------------------------NLESLNLDSCGIGDEG 268
LNLNRC LSDDG EKFS LT LE LNLDSC IGDEG
Sbjct: 61 LNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQIGDEG 120
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
LVNLTGL LK L LSDT+VG+SG+R++SGL LE +NLSFT ++D L++L GL++LKS
Sbjct: 121 LVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKS 180
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNLDARQITD GLA LTSL+GL LDLFGARITDSG YLR+FKNL+SLEICGG LTDAG
Sbjct: 181 LNLDARQITDAGLANLTSLSGLITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAG 240
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
VK+I+++ SLT LNLSQNC LTDKTLELISG+T L SLNVSNSR+T+ GLR+LKPLKNLR
Sbjct: 241 VKNIREIVSLTQLNLSQNCKLTDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLR 300
Query: 449 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
+L+LESCKV A DIK+L S DLPNL+SFRPE
Sbjct: 301 TLSLESCKVNAADIKKLHSTDLPNLISFRPE 331
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 171/354 (48%), Gaps = 60/354 (16%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA---------- 121
SG I+LK+ S I+D G+ +LRGL L++L+ +ITA
Sbjct: 5 SGFINLKELQISNS-------SITDLGISYLRGLQKLSTLNV-EGCSITAACFEYISALA 56
Query: 122 --------------QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
G + F+GL L +L L LV+LKGL KLE LN+ C
Sbjct: 57 ALACLNLNRCGLSDDGFEKFSGLTGLKRLSLAFNKITDACLVHLKGLTKLEYLNLDSCQ- 115
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L+GLT LKSL +S ++V +SGI Y+ GL KL LNL VT
Sbjct: 116 IGDEGLVNLTGLTLLKSLVLSDTEVGNSGIRYISGLNKLEDLNLSFTSVT---------- 165
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
D+G ++ LTNL+SLNLD+ I D GL NLT L L L+L +
Sbjct: 166 --------------DNGLKRLLGLTNLKSLNLDARQITDAGLANLTSLSGLITLDLFGAR 211
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 346
+ SG +L NL+S+ + ++D ++ + + SL LNL ++TD L ++
Sbjct: 212 ITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKLTDKTLELISG 271
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSL 398
+T L L++ +R+T+ G YL+ KNLR SLE C D H DL +L
Sbjct: 272 MTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTDLPNL 325
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 138/247 (55%), Gaps = 6/247 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ L+ + +TD+ L+HLK + L+ L+ + C QI D GL +L GL+ L SL + +
Sbjct: 85 LSLAFNKITDACLVHLKGLTKLEYLNLDSC-QIGDEGLVNLTGLTLLKSLVL-SDTEVGN 142
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G++ +GL L L+L + GL L GL L+SLN+ ITD+ + L+ L+
Sbjct: 143 SGIRYISGLNKLEDLNLSFTSVTDNGLKRLLGLTNLKSLNLD-ARQITDAGLANLTSLSG 201
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQL 240
L +L + +++TDSG YL+ + L L + G +T A + ++ + SL LNL++ C+L
Sbjct: 202 LITLDLFGARITDSGTTYLRSFKNLQSLEICGGLLTDAGVKNIREIVSLTQLNLSQNCKL 261
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR--HLSG 298
+D E S +T L SLN+ + + +EGL L L NL+ L L +V ++ ++ H +
Sbjct: 262 TDKTLELISGMTALRSLNVSNSRVTNEGLRYLKPLKNLRTLSLESCKVNAADIKKLHSTD 321
Query: 299 LTNLESI 305
L NL S
Sbjct: 322 LPNLISF 328
>gi|414586494|tpg|DAA37065.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 400
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 199/322 (61%), Positives = 237/322 (73%), Gaps = 24/322 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLC 276
D+GCE LT NLE LNLDSC IGDEGL +L GL
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLKGLI 378
Query: 277 NLKCLELSDTQVGSSGLRHLSG 298
LK LELSDT+VGS+GLRHLSG
Sbjct: 379 QLKNLELSDTEVGSNGLRHLSG 400
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 128/263 (48%), Gaps = 2/263 (0%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
VT G L L L+LE CP L L L L LNL C ++D + S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
LTNL L L SC I G+ L GL L L L V + L +S L +L +NLS
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GI D L GL+ LK+L+L QITD L L L L L+L +I D G +L+
Sbjct: 316 CGICDEGCENLKGLTKLKALSLGFNQITDACLIHLKDLVNLECLNLDSCKIGDEGLFHLK 375
Query: 370 NFKNLRSLEICGGGLTDAGVKHI 392
L++LE+ + G++H+
Sbjct: 376 GLIQLKNLELSDTEVGSNGLRHL 398
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 143/302 (47%), Gaps = 53/302 (17%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC---------------------- 262
+L L++ +C ++ +G + F+ L NL +L+L+ C
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241
Query: 263 ---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
GI D + L+ L NL+ L+LS ++ + G+ +L GL L +NL ++ L
Sbjct: 242 YCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEV 301
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
++ L+SL LNL I D G L LT L L L +IT
Sbjct: 302 ISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQIT------------------ 343
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
DA + H+KDL +L LNL +C + D+ L + GL L +L +S++ + S GLR
Sbjct: 344 ------DACLIHLKDLVNLECLNL-DSCKIGDEGLFHLKGLIQLKNLELSDTEVGSNGLR 396
Query: 440 HL 441
HL
Sbjct: 397 HL 398
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 358
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T GA N NL +L++ + G+ H+K L L LNL +TD ++ +S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LT L L +S+ +I++ G+ +L+ L L L LE C VTA
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 309 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 366
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 367 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|413937766|gb|AFW72317.1| hypothetical protein ZEAMMB73_434085 [Zea mays]
Length = 403
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 200/324 (61%), Positives = 249/324 (76%), Gaps = 24/324 (7%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRD+SQQIFNELV S LTE SL+ FRDCALQD+ LG+YPGV D WM+V+ASQ SLL
Sbjct: 80 MLPRDLSQQIFNELVNSNRLTEASLQVFRDCALQDIGLGEYPGVKDAWMEVVASQKQSLL 139
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVD+S S+V DSG+ L+DCS++QSL N+C QIS+ GL L GLSNL+SLSF+R+NA+T
Sbjct: 140 SVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSNAVT 199
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+GM+AFA L+NL+ LDLE C +IHGGL++LK L KLESLN+++CN I DSD+K L+ LT
Sbjct: 200 AEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLT 259
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK LQ+SC K+TD G++Y++GLQKLT LNLEGCPVTAACL+++S L SL LNLNRC +
Sbjct: 260 NLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNRCGI 319
Query: 241 SDDGCEKFS------------------------RLTNLESLNLDSCGIGDEGLVNLTGLC 276
DDGCE F L +LESLNLDSC IGD+GL +L GL
Sbjct: 320 YDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNLDSCKIGDDGLSHLKGLV 379
Query: 277 NLKCLELSDTQVGSSGLRHLSGLT 300
L+ LELSDT+VG++GL+HLSGL+
Sbjct: 380 LLQSLELSDTEVGNNGLQHLSGLS 403
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 292 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
GL HL LT LES+N+ + I+D ++ L L++LK L L +ITD G++ + L L
Sbjct: 226 GLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQKL 285
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL+L G +T + + +L L + G+ D G ++ + L L +LNL N +T
Sbjct: 286 THLNLEGCPVTAACLEAISGLSSLVLLNLNRCGIYDDGCENFEGLKRLKVLNLGFN-YIT 344
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D L + L L SLN+ + +I GL HLK L L+SL L +V N ++ L
Sbjct: 345 DACLVHLKELISLESLNLDSCKIGDDGLSHLKGLVLLQSLELSDTEVGNNGLQHL 399
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 141/267 (52%), Gaps = 4/267 (1%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
+L S+ ISCS+V DSGI L+ + L C ++ + L LS L +L L+ R
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 240 -LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 297
++ +G F+ L NL +L+L+ C GL++L L L+ L + + S +++L+
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLT 256
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
LTNL+ + LS I+D + + GL L LNL+ +T L A++ L+ L L+L
Sbjct: 257 DLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTAACLEAISGLSSLVLLNLNR 316
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D G K L+ L + +TDA + H+K+L SL LNL +C + D L +
Sbjct: 317 CGIYDDGCENFEGLKRLKVLNLGFNYITDACLVHLKELISLESLNL-DSCKIGDDGLSHL 375
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPL 444
GL L SL +S++ + + GL+HL L
Sbjct: 376 KGLVLLQSLELSDTEVGNNGLQHLSGL 402
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 315 GSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
G L L L+ L+SLN+ I D+ + LT LT L L L +ITD G +Y+R +
Sbjct: 225 GGLIHLKDLTKLESLNMRYCNYIADSDIKYLTDLTNLKDLQLSCCKITDLGVSYIRGLQK 284
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + G +T A ++ I LSSL LLNL++ C + D E GL L LN+ + I
Sbjct: 285 LTHLNLEGCPVTAACLEAISGLSSLVLLNLNR-CGIYDDGCENFEGLKRLKVLNLGFNYI 343
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
T A L HLK L +L SL L+SCK+ + + L+
Sbjct: 344 TDACLVHLKELISLESLNLDSCKIGDDGLSHLK 376
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 359
+L S+++S + ++D + L SS++SL + QI+++GL L+ L+ L+ L +
Sbjct: 137 SLLSVDISCSEVADSGIDLLRDCSSMQSLACNYCDQISESGLGVLSGLSNLSSLSFKRSN 196
Query: 360 -ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T G N NL +L++ G G+ H+KDL+ L LN+ + D ++ ++
Sbjct: 197 AVTAEGMRAFANLVNLLNLDLEGCLKIHGGLIHLKDLTKLESLNMRYCNYIADSDIKYLT 256
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LT L L +S +IT G+ +++ L+ L L LE C VTA
Sbjct: 257 DLTNLKDLQLSCCKITDLGVSYIRGLQKLTHLNLEGCPVTA 297
>gi|255088361|ref|XP_002506103.1| predicted protein [Micromonas sp. RCC299]
gi|226521374|gb|ACO67361.1| predicted protein [Micromonas sp. RCC299]
Length = 610
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 189/495 (38%), Positives = 281/495 (56%), Gaps = 27/495 (5%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP D+SQ++F +LV +R LT F C L + L YPG+ D W+ V+A+ +L
Sbjct: 100 VLPSDLSQRVFEDLVQTRRLTARVTGDFIGCHLTEANLRSYPGLTDDWLAVLATSAPNLS 159
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S++LSG + +T G L C L+SLD + C ++D L + +S L L+ + I
Sbjct: 160 SINLSGCAALTPDGFNALAACVELESLDVSECPGVNDNALAAVASMSRLRRLACAGCDGI 219
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T G++ +G L ++LERC + GLV L GL +LE L+ WCN + +D+ L L
Sbjct: 220 TGAGLRYVSGATKLRCVNLERCNGLTNGLVYLSGLTELERLDAGWCNHVDSNDVTSLRSL 279
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AAC------------------ 220
LK L ++ +KV D G+A + L L LNL GC +T AC
Sbjct: 280 KKLKHLNLARTKVDDQGVATIGSLSALETLNLAGCRITDGACFLLGGLTALKELSLEWCR 339
Query: 221 -----LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ L++L L LNL ++D+G + + L L ++LDSC +GD+ L
Sbjct: 340 VGDGGVRRLASLAKLEVLNLGYSSVTDEGVQHLAPLVKLREIDLDSCQVGDDACKALAEW 399
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL+ + LSDT VG+ GL+ +S LT L +NLS++ +SD + L +S++SL+LD R
Sbjct: 400 PNLEDVNLSDTAVGNLGLKRISKLTRLRRVNLSYSNVSDDGVMYLENAASIRSLSLDTRM 459
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+TD GL L L + LDLFGARITD GA +LR+ L++LE+CGGG+TDAGVKHI D
Sbjct: 460 VTDEGLGYLAKLKDIEELDLFGARITDEGAKHLRHMPRLKTLELCGGGITDAGVKHIGDA 519
Query: 396 -SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LTLLNL QN ++D + + L L SLN+ SRI++ G+ L L NL +L L+
Sbjct: 520 CRELTLLNLGQNFRISDAAVPFLLQLHKLGSLNLQYSRISNEGVTQLSQLSNLTTLALKG 579
Query: 455 C-KVTANDIKRLQSR 468
C +V+ ++ L+++
Sbjct: 580 CNRVSQAAVEELRAK 594
>gi|414586492|tpg|DAA37063.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 356
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/272 (62%), Positives = 210/272 (77%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LPRD+SQQIFNELV CLTE SL AFRDC LQD+CLG YPGV D WM+V+ASQG SLL
Sbjct: 79 LLPRDLSQQIFNELVECGCLTEASLGAFRDCDLQDICLGDYPGVTDAWMEVVASQGQSLL 138
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLS SDVTDSG LKDCS++QSL ++C QIS+ GL+ L G SNLTSLS ++ A+T
Sbjct: 139 SVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVT 198
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KAFA L+NLV LDLERC +I+GGL++LKGL KLE LN+++CN ITDSDMK LS LT
Sbjct: 199 AEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLT 258
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ LQ+S K++ G++YL+GL KL LNLEGC VTA CL+ +S L SL LNL+RC +
Sbjct: 259 NLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSRCGI 318
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
D+GCE LT L++L+L I D L++L
Sbjct: 319 CDEGCENLKGLTKLKALSLGFNQITDACLIHL 350
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 104/215 (48%), Gaps = 2/215 (0%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CS 190
+L+ +DL G LK ++SL +C+ I++ +K LSG +NL SL I C+
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS 249
VT G L L L+LE CP L L L L LNL C ++D + S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
LTNL L L SC I G+ L GL L L L V + L +S L +L +NLS
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR 315
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
GI D L GL+ LK+L+L QITD L L
Sbjct: 316 CGICDEGCENLKGLTKLKALSLGFNQITDACLIHL 350
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 133/264 (50%), Gaps = 9/264 (3%)
Query: 187 ISCSKVTDSGIAYLKG--LQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDD 243
+ C +T++ + + LQ + L + G VT A ++ +++ G SL ++L+ ++D
Sbjct: 93 VECGCLTEASLGAFRDCDLQDICLGDYPG--VTDAWMEVVASQGQSLLSVDLSCSDVTDS 150
Query: 244 GCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G ++++SL D C I + GL L+G NL L + V + G + + L N
Sbjct: 151 GFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCAAVTAEGAKAFANLVN 210
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L +++L I+ G + K ITD+ + L+ LT L L L +I
Sbjct: 211 LVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLSDLTNLRELQLSSCKI 270
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+ G +YLR L L + G +T ++ I +L+SL LLNLS+ C + D+ E + GL
Sbjct: 271 SAFGVSYLRGLHKLGHLNLEGCAVTAVCLEVISELASLVLLNLSR-CGICDEGCENLKGL 329
Query: 421 TGLVSLNVSNSRITSAGLRHLKPL 444
T L +L++ ++IT A L HLK +
Sbjct: 330 TKLKALSLGFNQITDACLIHLKVM 353
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 168 ITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD+ M+ ++ +L S+ +SCS VTDSG LK + L + C ++ L +LS
Sbjct: 122 VTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLS 181
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG---------- 274
+L L++ +C ++ +G + F+ L NL +L+L+ C + GL++L G
Sbjct: 182 GFSNLTSLSIKKCAAVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLR 241
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
CN + S +++LS LTNL + LS IS + L GL L LNL+
Sbjct: 242 YCN---------GITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGC 292
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+T L ++ L L L+L I D G L+ L++L + +TDA + H+K
Sbjct: 293 AVTAVCLEVISELASLVLLNLSRCGICDEGCENLKGLTKLKALSLGFNQITDACLIHLK 351
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG-A 358
+L S++LS + ++D L SS++SL D QI++ GL L+ + LT L + A
Sbjct: 136 SLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLKTLSGFSNLTSLSIKKCA 195
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T GA N NL +L++ + G+ H+K L L LNL +TD ++ +S
Sbjct: 196 AVTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEKLNLRYCNGITDSDMKYLS 255
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LT L L +S+ +I++ G+ +L+ L L L LE C VTA
Sbjct: 256 DLTNLRELQLSSCKISAFGVSYLRGLHKLGHLNLEGCAVTA 296
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 309 FTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAA 366
+ G++D + +A SL S++L +TD+G L + + L + +I++ G
Sbjct: 119 YPGVTDAWMEVVASQGQSLLSVDLSCSDVTDSGFNLLKDCSSMQSLACDYCDQISEHGLK 178
Query: 367 YLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L F NL SL I C +T G K +L +L L+L + + + L
Sbjct: 179 TLSGFSNLTSLSIKKCAA-VTAEGAKAFANLVNLVNLDLERCPKINGGLIHLKGLKKLEK 237
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ IT + +++L L NLR L L SCK++A + L+
Sbjct: 238 LNLRYCNGITDSDMKYLSDLTNLRELQLSSCKISAFGVSYLR 279
>gi|24461848|gb|AAN62335.1|AF506028_2 CTV.1 [Citrus trifoliata]
Length = 205
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 176/254 (69%), Positives = 177/254 (69%), Gaps = 65/254 (25%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLE------SLNLDSCGIGDEGLVNLTGLCNLKC 280
LGSLFYLNLNRCQLSDDGCEKFS L E +LDSCGIGDEGLVN
Sbjct: 1 LGSLFYLNLNRCQLSDDGCEKFSNLGFNEITDECLVYHLDSCGIGDEGLVNY-------- 52
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG
Sbjct: 53 --------------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 86
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
LAALTS HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL L
Sbjct: 87 LAALTS----AHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLAL 142
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LNLSQNCNLTDKTLE VSNSRITSAGLRH LESCKVTAN
Sbjct: 143 LNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH----------PLESCKVTAN 181
Query: 461 DIKRLQSRDLPNLV 474
DIKRLQSRDLPNL
Sbjct: 182 DIKRLQSRDLPNLF 195
>gi|147832652|emb|CAN74892.1| hypothetical protein VITISV_002002 [Vitis vinifera]
Length = 300
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/181 (81%), Positives = 166/181 (91%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ GL NLESINLSFT ++D LRK + LSSLKSLNLDA QITD GLAALTSLTGLTHLDL
Sbjct: 113 MEGLANLESINLSFTAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLTHLDL 172
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
FGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+ LT+LNLSQNCNLTDK+LE
Sbjct: 173 FGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTDKSLE 232
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
LISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCKVT NDIK+LQS+DLPNL +
Sbjct: 233 LISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKLQSKDLPNLPA 292
Query: 476 F 476
F
Sbjct: 293 F 293
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
VN++GL LES+N+ + +TDS ++ S L++LKSL + ++TD+G+A L L LT
Sbjct: 110 FVNMEGLANLESINLSF-TAVTDSGLRKSSALSSLKSLNLDAHQITDAGLAALTSLTGLT 168
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGD 266
L+L G +T + L +L L + L+D G + LT L LNL +C + D
Sbjct: 169 HLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQNCNLTD 228
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
+ L ++GL L L +S++++ ++GL+HL L NL+S+ L ++ ++KL
Sbjct: 229 KSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTVNDIKKL 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 32/265 (12%)
Query: 152 KGLMKLESLNIKWCNCI---TDSDMKPLSGLTNLKSLQ---------ISCSKVTDSGIAY 199
+G + LE NI W + D+ + GL +++ + I K+T S I +
Sbjct: 45 EGSLDLEKANI-WLGTLLLERSEDIYRMKGLLSVQGMDERFVFQDYLILFYKITTSLIPF 103
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+ L +N+EG L +L +NL+ ++D G K S L++L+SLNL
Sbjct: 104 FYTI--LLFVNMEG-------------LANLESINLSFTAVTDSGLRKSSALSSLKSLNL 148
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
D+ I D GL LT L L L+L ++ SG +L NL+S+ + G++D ++
Sbjct: 149 DAHQITDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKN 208
Query: 320 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+ L+ L LNL +TD L ++ LT L L + +RIT++G +L+ KNL+SL
Sbjct: 209 IKDLTCLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLT 268
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNL 403
+ +T V IK L S L NL
Sbjct: 269 LDSCKVT---VNDIKKLQSKDLPNL 290
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++LS + VTDSGL S+L+SL+ + QI+D GL L L+ LT L
Sbjct: 117 ANLESINLSFTAVTDSGLRKSSALSSLKSLNLD-AHQITDAGLAALTSLTGLTHLDLF-G 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKP 175
IT G NL L++ G+ N+K L L LN+ NC +TD ++
Sbjct: 175 ARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLTCLTVLNLSQ-NCNLTDKSLEL 233
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+SGLT L SL +S S++T++G+ +LK L+ L L L+ C VT
Sbjct: 234 ISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCKVTV 276
>gi|384254255|gb|EIE27729.1| RNI-like protein, partial [Coccomyxa subellipsoidea C-169]
Length = 515
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 177/494 (35%), Positives = 273/494 (55%), Gaps = 42/494 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q + +EL+Y+ L + L F + +L LG+ GV D W+ +A QG+ +
Sbjct: 24 LPADLAQLVLDELIYTASLDQEGLALFSRQHIYNLKLGECAGVEDDWLRHLAPQGTGMHG 83
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ ++ SG L +NL+ L C +S L L LS +TSL+ + + I+
Sbjct: 84 LFIT----KHSGAAGL---TNLRDLSLQGCEGLSS--LSALTDLSKVTSLNLKGCSGIS- 133
Query: 122 QGMKAFAGLINLVKLD--LERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ +G + L + C + G G+ +LE+L++ WC+ ITD+D+K L+
Sbjct: 134 -GLRHLSGALFCASLGSVAQMCGSEYWSG--AWAGMKQLENLDLSWCSGITDADVKALAA 190
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR 237
LT + LQ+S + V DSGI L+ + +L L L GC ++ + S+SAL SL LNL
Sbjct: 191 LTAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCSGISNGAVGSVSALTSLEELNLEW 250
Query: 238 CQLS------------------------DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
C +S D+ ++ LTNL +LNLDSC + D GL +++
Sbjct: 251 CTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTSLTNLRTLNLDSCPVSDRGLHHIS 310
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 332
L NL+ + LSDT + G+ + L ++ +NLS+T G+ D L +A L++L L+LD
Sbjct: 311 ELTNLEDVNLSDTAITDQGMIAFAPLKGMQRLNLSYTAGVGDLGLAAVARLTALTELHLD 370
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
R TD GL + LT L LDLFGARITD+G +LR F+ L LEICGGG++D GVK +
Sbjct: 371 GRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHLRPFRRLERLEICGGGISDEGVKEL 430
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L+ L L+L+QN +TD+ +SGL+ L LN++ +++T G+ L+ L NL SL L
Sbjct: 431 IWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNLTGTQLTGNGILPLRSLTNLESLCL 490
Query: 453 ESCKVTANDIKRLQ 466
+ +V RLQ
Sbjct: 491 KRTRVKQAAADRLQ 504
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 164/345 (47%), Gaps = 27/345 (7%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L G+ D + +A+ +++ + LS + V DSG+ L+ S L+ L C
Sbjct: 169 LENLDLSWCSGITDADVKALAAL-TAITGLQLSRTLVADSGIFALRSMSRLRCLGLAGCS 227
Query: 93 QISDGG---------LEHL---------RGLSNLTSLSFRR--NNAITAQG---MKAFAG 129
IS+G LE L +GLS+L++L+ R N A T G + A+
Sbjct: 228 GISNGAVGSVSALTSLEELNLEWCTVSVKGLSHLSTLTELRSLNVAYTTAGDNALAAWTS 287
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L+L+ C GL ++ L LE +N+ ITD M + L ++ L +S
Sbjct: 288 LTNLRTLNLDSCPVSDRGLHHISELTNLEDVNLS-DTAITDQGMIAFAPLKGMQRLNLSY 346
Query: 190 SK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ V D G+A + L LT L+L+G T L +++ L L L+L +++D GC
Sbjct: 347 TAGVGDLGLAAVARLTALTELHLDGRSFTDVGLRTIAPLTQLQTLDLFGARITDAGCVHL 406
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINL 307
LE L + GI DEG+ L L L+ L L+ + ++ LSGL+ L +NL
Sbjct: 407 RPFRRLERLEICGGGISDEGVKELIWLTGLQHLSLAQNARITDRASLFLSGLSQLRGLNL 466
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ T ++ + L L++L+SL L ++ L L H
Sbjct: 467 TGTQLTGNGILPLRSLTNLESLCLKRTRVKQAAADRLQPLLPRIH 511
>gi|452822896|gb|EME29911.1| leucine-rich repeat family protein [Galdieria sulphuraria]
Length = 588
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 174/494 (35%), Positives = 268/494 (54%), Gaps = 28/494 (5%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
PR++ Q++ LV SR L LE + + L V + W+ + + S+L +
Sbjct: 80 PRELIQRLVEYLVESRRLNCEFLETLQQHCVYRLRFTSQLQVTNDWLFYLQNL-STLSRL 138
Query: 63 DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+L ++D GL +L + +L LD C+QI+ GL+HL GL L L + IT+
Sbjct: 139 ELKDCKFISDEGLSNLAEIVSLTYLDLAGCVQITSEGLQHLAGLKYLKVLVLKSCKQITS 198
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ A L NL +LD+E+C+ + + +L L KLE N WC ++D + LS
Sbjct: 199 EGLSYLANLHNLTRLDIEQCSEVSDSFLQSLNRLTKLEDFNCAWCFRLSDEGLTILSNFH 258
Query: 181 NLKSLQISCSKVT------------------------DSGIAYLKGLQKLTLLNLEGCPV 216
++ L IS ++V+ D YL+GL L L++EGC V
Sbjct: 259 RMRYLNISKTRVSQNFGRFLPGMPRLRVLKVAGTGFSDRDAQYLRGLYSLRELDVEGCSV 318
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SRLTNLESLNLDSCGIGDEGLVNLTGL 275
L ++ AL + LNL ++S+ G + + L+ LNLDSC IGD + +L+ L
Sbjct: 319 GDPFLATIYALPRIRKLNLGYTKISERGVSLYLGNMLKLQYLNLDSCLIGDFAVEHLSRL 378
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
LKCL+L+DT V SSGL L+ LT+LE++ L++T +S+ L L L+ L+SL+LD R
Sbjct: 379 EQLKCLDLTDTTVSSSGLSGLANLTSLETLILAYTSVSNSGLEHLKNLTKLESLSLDTRG 438
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I+D GLA L L L HLDLFGA++TD+G ++ L SLE+C GG+TDAG++ I L
Sbjct: 439 ISDDGLAYLKKLKHLKHLDLFGAKVTDNGLRHISEISTLESLEVCAGGVTDAGLESIGKL 498
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L LNLSQN +TD L +S L+ L SLN+S + + ++ +LR + +E C
Sbjct: 499 RALRTLNLSQNHRITDAGLIHLSCLSHLTSLNLSYTNVGDGICSLVQKCPSLRMIGIERC 558
Query: 456 KVTANDIKRLQSRD 469
++ RL++
Sbjct: 559 GLSIAAKIRLRTHQ 572
>gi|59802533|gb|AAX07510.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 550
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 171/423 (40%), Positives = 246/423 (58%), Gaps = 8/423 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S++L + VTD+GL LK + L SLD +++D GL+ L+GL++LT L R
Sbjct: 90 TNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLR-GTEVTDVGLQELKGLNSLTELRLRAT 148
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G++ GL NL LDL R TR+ GL LKGL L SL+++ +TD+ +K
Sbjct: 149 E-VTNVGLQELKGLNNLASLDL-RDTRVTDVGLQELKGLNNLASLDLRDTK-VTDTGLKE 205
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GLTNL +L + ++VTD G+ L GL KL L+L VT L L + L L+L
Sbjct: 206 LKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELKSFTKLALLDL 265
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
+ +++D G + LT+L SL+L + D GL L GL +L L LS T+ +GL+
Sbjct: 266 SGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSGTRTTDAGLQE 325
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+GLTNL S++LS T ++D L++L + L SL+L +TDTGL L LT LT LDL
Sbjct: 326 LNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELKGLTNLTALDL 385
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
F ++TD G L L SL + +TD G+K +K+L+ L LL+LS +TD L+
Sbjct: 386 FSTQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLS-GTRVTDAGLQ 444
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+SGLT L L + +R+T AGL+ LK L +L SL L +VT ++ L L NL +
Sbjct: 445 ELSGLTKLAFLRLGGTRVTDAGLKELKGLTSLTSLHLSGTRVTDAGLQELSG--LTNLTT 502
Query: 476 FRP 478
P
Sbjct: 503 TGP 505
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/387 (41%), Positives = 224/387 (57%), Gaps = 5/387 (1%)
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
F Q++D GL+ L+GL+NLTSL +T +G+K L NL LDL GL
Sbjct: 2 FSTQVTDAGLQELKGLANLTSLGLSATK-VTNEGLKELKELTNLTALDLFSTGVTDTGLQ 60
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
LKGL L SLN+ +T + ++ L GLTNL SL + + VTD+G+ LKGL KL L
Sbjct: 61 ELKGLTNLTSLNL-GVTQVTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASL 119
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
+L G VT L L L SL L L ++++ G ++ L NL SL+L + D GL
Sbjct: 120 DLRGTEVTDVGLQELKGLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGL 179
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L GL NL L+L DT+V +GL+ L GLTNL +++L T ++D L++L GL+ L SL
Sbjct: 180 QELKGLNNLASLDLRDTKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASL 239
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L +T TGL L S T L LDL G R+TD+G L+ +L SL + G +TD G+
Sbjct: 240 DLSRTGVTGTGLIELKSFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGL 299
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K +K L+SLT L+LS TD L+ ++GLT L SL++S++R+T GL+ LK L S
Sbjct: 300 KELKGLTSLTSLHLS-GTRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTS 358
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSF 476
L L VT +K L+ L NL +
Sbjct: 359 LHLGGTGVTDTGLKELKG--LTNLTAL 383
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 165/432 (38%), Positives = 240/432 (55%), Gaps = 26/432 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LS + VT+ GL LK+ +NL +LD F ++D GL+ L+GL+NLTSL+
Sbjct: 18 ANLTSLGLSATKVTNEGLKELKELTNLTALDL-FSTGVTDTGLQELKGLTNLTSLNLGVT 76
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC--------- 167
+T G++ GL NL L+L GL +LKGL KL SL+++
Sbjct: 77 Q-VTGAGLQELKGLTNLTSLNLGSTGVTDAGLQDLKGLNKLASLDLRGTEVTDVGLQELK 135
Query: 168 --------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+T+ ++ L GL NL SL + ++VTD G+ LKGL L L+L
Sbjct: 136 GLNSLTELRLRATEVTNVGLQELKGLNNLASLDLRDTRVTDVGLQELKGLNNLASLDLRD 195
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
VT L L L +L L+L Q++D G ++ + LT L SL+L G+ GL+ L
Sbjct: 196 TKVTDTGLKELKGLTNLTALDLFSTQVTDVGLKELNGLTKLASLDLSRTGVTGTGLIELK 255
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L+LS T+V +GL L GLT+L S++L T ++D L++L GL+SL SL+L
Sbjct: 256 SFTKLALLDLSGTRVTDAGLHQLKGLTSLTSLHLGGTRVTDVGLKELKGLTSLTSLHLSG 315
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ TD GL L LT LT L L R+TD G L++F L SL + G G+TD G+K +K
Sbjct: 316 TRTTDAGLQELNGLTNLTSLHLSDTRVTDVGLKELKSFTKLTSLHLGGTGVTDTGLKELK 375
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L++LT L+L + +TD L+ ++GLT L SL +S + IT GL+ LK L L L L
Sbjct: 376 GLTNLTALDLF-STQVTDVGLQELNGLTKLTSLYLSAAAITDTGLKELKELTQLALLDLS 434
Query: 454 SCKVTANDIKRL 465
+VT ++ L
Sbjct: 435 GTRVTDAGLQEL 446
>gi|147821391|emb|CAN67937.1| hypothetical protein VITISV_014237 [Vitis vinifera]
Length = 216
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/178 (64%), Positives = 138/178 (77%), Gaps = 17/178 (9%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
MLPRDISQQIF+ V S CLT SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 47 MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 106
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDLSGS VTD GL LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 107 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 166
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A+GM+AF+ L+NL KLDLERC+RIHGGL++LK DSD+K LSG
Sbjct: 167 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLK-----------------DSDLKALSG 207
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
+L S+++ G +TD G+ +KD S++ +L+ + +++ L+ ISGL+ L SL+ S
Sbjct: 104 SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSN 163
Query: 433 -ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+T+ G+R L NL L LE C + L+ DL L
Sbjct: 164 TVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKDSDLKAL 205
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 325 SLKSLNL-DARQITDTGLAALTSLT-GLTHLDLFGARITDSGAAYLRNFKNLR--SLEIC 380
+++ +NL + ++ D+ + ++S L +DL G+ +TD G + L++ N++ S C
Sbjct: 78 AIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYC 137
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+++ G+K+I LS+LT L+ ++ +T + + S L L L++ GL H
Sbjct: 138 -DQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIH 196
Query: 441 LKPLKNLRSLTLESC 455
LK +L++L+ C
Sbjct: 197 LKD-SDLKALSGNVC 210
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I++QG+ +L+ +DL + GL LK ++ L+ +C+ I++ +K +
Sbjct: 96 DIISSQGL-------SLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNI 148
Query: 177 SGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC 214
SGL+NL SL S VT G+ L L L+LE C
Sbjct: 149 SGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERC 187
>gi|303286333|ref|XP_003062456.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455973|gb|EEH53275.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 519
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 170/517 (32%), Positives = 263/517 (50%), Gaps = 50/517 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP D++Q++F+ L + LT +L F C L D V D ++ + +SL
Sbjct: 1 LPPDLAQRVFDVLARANELTVDALGRFEGCFLSDASGLDANVVTDAFLAALRDVATSLSR 60
Query: 62 VDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G D SG + + C+ + ++ + C + D L + ++L S N+A+
Sbjct: 61 IDLTGCDALTSGGLRSNFPCCARMTIVNVSECAGVDDDALAAMASATHLKSFFCEGNDAV 120
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-------------- 165
T G++ A L +L +L ERC R+ G+ +L GL L SLN+ WC
Sbjct: 121 TGSGVRHLASLTSLRELSFERCARLREGMCHLAGLRNLRSLNLGWCGKLSAKETSRALTP 180
Query: 166 -----------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
N T + L+G L +L +S + D + +L G
Sbjct: 181 FFPASASAPRSTPIELSLARTGANADTARALGQLAG--RLVALNVSGCAMNDDALHFLGG 238
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
L L L+LE C V+ + L L L LNL ++++DG + LT L +NLDS
Sbjct: 239 LINLRSLSLERCRVSDVGVRQLCGLRDLRELNLGYTRVTNDGVLALAPLTELRVVNLDSL 298
Query: 263 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
G +GD G+ L+ L +SDT VG G+R L L +NL +T ++D L L
Sbjct: 299 GDVGDAGMEVARRWEKLESLCVSDTGVGDGGVRKLKSCARLRDLNLGYTNVTDDGLEHLE 358
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK---NLRSLE 378
++SL++LNLD+R ITD G+ L +L LT +DLFGA+I+D GA+ L FK L LE
Sbjct: 359 DMTSLRNLNLDSRLITDDGVRHLANLGALTAIDLFGAKISDEGASRL--FKCTPKLERLE 416
Query: 379 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+CGG LT+ GVK I + + LN+ +N +TD ++ + + L SLN++ S+ITS G
Sbjct: 417 LCGGSLTNVGVKRIAEHCKGMKTLNIGRNAKITDDCVDDVVTMRELTSLNLAFSKITSDG 476
Query: 438 LRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNL 473
+R L L L SL ++ C+ V+ ++RL+ R+ P L
Sbjct: 477 VRKLAALPCLTSLAIKGCESVSLAAVERLK-REAPAL 512
>gi|302853080|ref|XP_002958057.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
gi|300256635|gb|EFJ40897.1| hypothetical protein VOLCADRAFT_99233 [Volvox carteri f.
nagariensis]
Length = 581
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 183/523 (34%), Positives = 272/523 (52%), Gaps = 52/523 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIASQGSSLL 60
LP D+ Q++F+EL+ + + L FR+ L + L G+ ND+ + + S L
Sbjct: 41 LPADLVQRVFDELLAAGRFSLSDLTRFRELDLDTVVLVGRADVRNDRLRSL--EKCSRLR 98
Query: 61 SVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
S+DL+G V+D G+ L+ LQ L + C+ ++D L H+RGL+ L L R I
Sbjct: 99 SLDLTGCVQVSDVGVASLRRHGGLQRLRLSHCVTLTDAALNHVRGLTGLQELELRECELI 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T +G+ +GL L LDL++C RI GGL +L L L +L + WC + DS++ L L
Sbjct: 159 TGEGLMQLSGLTQLKTLDLDQCRRIKGGLQHLTSLRHLATLRLGWCPLLGDSEVTWLREL 218
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+++ ++VTD G+++L L LT L+L GC +T A L L +L L+L C
Sbjct: 219 GQLRELRLAYTQVTDVGVSHLAALTALTHLDLGGCTRLTDAAAAPLQRLTALQVLSLYGC 278
Query: 239 -QLSDDGCEKF------------SRLTNLESLNLDS--------------CGIGDEGLVN 271
Q + G T + + L + C +GD
Sbjct: 279 GQFGNAGLAMLIAVPLLSLNSLTLSYTAVTTPGLTALSSLSRLTLLSLDSCAVGDAVCRV 338
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTG------------ISDGS 316
L L L L+LS+T VG GL L+ T+L + L++T I+D
Sbjct: 339 LRRLPRLANLDLSETSVGDGGLDALTVSGPPTSLTHLKLTYTKVNELGMPGKCVFITDEG 398
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----AYLRNFK 372
L KL+ L L+ L+LD+ +TD L +T L+ LT LDLF RITD+GA
Sbjct: 399 LSKLSLLVGLQQLDLDSGTLTDACLRHVTGLSALTGLDLFSCRITDAGARLLGGSGHLGG 458
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNS 431
NLRSLE CGG LTDAG H+ L+SLT LNLSQN L D + L + L+ L L+++++
Sbjct: 459 NLRSLECCGGLLTDAGAVHLARLTSLTCLNLSQNARLGDAGAQSLAASLSDLQELSLNHT 518
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
ITSA LR + L LR L++ + +VT + +L+SR P+L+
Sbjct: 519 NITSACLRDVAALPWLRYLSVSNTRVTDAAVAKLRSRAHPDLI 561
>gi|307107435|gb|EFN55678.1| hypothetical protein CHLNCDRAFT_133919 [Chlorella variabilis]
Length = 553
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/459 (36%), Positives = 250/459 (54%), Gaps = 37/459 (8%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPG-VNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIH 76
L+ + L FR L LG YP V W+ +++ SL + DLS ++ + D L
Sbjct: 65 LSGLGLHFFR------LPLGAYPERVQPSWLRCLST--PSLEAADLSKTEASGMDEVLAS 116
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +L L ++C+ ++DGGL L+G+++L LS +TA GM GL L +L
Sbjct: 117 LGPTPHLAQLCLDYCVDLTDGGLALLQGMTSLEELSLAGCELLTAVGMGHLRGLTRLRRL 176
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP-------LSGLTNLKSLQISC 189
L+ C +I L L L +LE L++ WC+ + DSD + L L L++L ++
Sbjct: 177 SLQTCHQI--SLAPLAQLRQLEQLDVGWCSSLDDSDAQVTDHGLACLHSLGQLRALNLAG 234
Query: 190 SKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALG-SLFYLNLNRCQLSDDGCE 246
+V+D +A L + L L LNLE C A L ++S L L+L +SD G
Sbjct: 235 VRVSDEALAALLRHLPHLRALNLERCLQAGDASLAAVSQRALQLRELHLGYTAVSDRGLL 294
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
LT L L+L++C +GD GL L+ L ++ L+LSDT + + ++ + LE +N
Sbjct: 295 LLGGLTQLHVLSLENCSVGDGGLAVLSHLTQMRQLDLSDTSASNETMSTVAAMRQLECLN 354
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
LSFTG++D L++L LSSL+ LNLD+R TD G+ ++ L GL LDLFGARI D+G A
Sbjct: 355 LSFTGVNDLGLKRLRRLSSLRCLNLDSRHFTDAGMVSVAQLAGLECLDLFGARIGDAGCA 414
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L KNLR LE+CGGG+TDAGV H+ L+ L L+L+Q S G S
Sbjct: 415 SLSKLKNLRRLEVCGGGVTDAGVAHLVALTRLQHLSLAQ-----------ASACWG--SC 461
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 464
+ N R++++ + HL L L +L L ++C T ++ R
Sbjct: 462 TLPNYRVSNSCILHLIKLNELMALNLSQACACTTQNLHR 500
>gi|219122964|ref|XP_002181805.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407081|gb|EEC47019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 486
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 251/492 (51%), Gaps = 44/492 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP+D+ I L+ L +L R+C L L L GV D+W++ ++++ S
Sbjct: 1 LPQDVVDDILQSLIRHSALNATTLRILRNCELGVLSLSGCRGVTDEWLEALSAESSD--- 57
Query: 62 VDLSGSDVTDSGLIHLKDCS----NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S + + + H S N LD +++D GL L L L +
Sbjct: 58 ---SPPHLRTALMWHPCAASSALTNTTLLDLRGSQRLTDRGLMQLHDLGRLEVAKLDNCH 114
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ +G+ + L L L C R+ +VN+ L L++L++ C CITD + L
Sbjct: 115 SVVGRGLVVLSSSPRLHTLSLTNCRRLTDEAIVNISHLQSLQALSLDGCRCITDFSLAAL 174
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSAL----GSL 230
+ + NL+ L +S C +T+ G+ L+ LQ+L ++L C V+ A + +L+A +L
Sbjct: 175 ADMYNLRKLGLSQCDLITNEGLKALEHLQRLQEISLGWCRQVSDAGIQTLTAQPGRSSNL 234
Query: 231 FYLNLNRCQLSDDGCEKFSRLTN------------------------LESLNLDSCGIGD 266
L L RC ++D+G + ++ N LE LNLDSC IGD
Sbjct: 235 QILRLARCPITDEGVQYLGKIRNVKTLELCYSAVKDIHLTKLVNLPMLEELNLDSCPIGD 294
Query: 267 ---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+ N L NL L+L+D+ + G+ ++ T L+ ++L + IS+ LR L+ L
Sbjct: 295 LAIQHFANHNVLPNLVSLDLADSDISDLGMVQIAKFTKLKRLSLFYCSISNRGLRHLSIL 354
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L+ LNLD+R I+D GL L L L LD+F R+TD G YL K L SLE+CGGG
Sbjct: 355 TELRVLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVTDLGCTYLSKIKTLESLELCGGG 414
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ DAG + L +LT LNLSQN +T++ ++ L+ L +LN+S++R+ ++ LR+
Sbjct: 415 VRDAGCASLAKLENLTSLNLSQNERITNRGAAALAALSKLKALNLSHTRVNASALRYFSG 474
Query: 444 LKNLRSLTLESC 455
L NL+SL L C
Sbjct: 475 LMNLQSLALYGC 486
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 40/394 (10%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++C L L + C ++D LE L S+ + R A+ A + L N L
Sbjct: 27 LRNC-ELGVLSLSGCRGVTDEWLEALSAESSDSPPHLR--TALMWHPCAASSALTNTTLL 83
Query: 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL R+ GL+ L L +LE + C+ + + LS L +L ++ C ++TD
Sbjct: 84 DLRGSQRLTDRGLMQLHDLGRLEVAKLDNCHSVVGRGLVVLSSSPRLHTLSLTNCRRLTD 143
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSRLT 252
I + LQ L L+L+GC +T L +L+ + +L L L++C L +++G + L
Sbjct: 144 EAIVNISHLQSLQALSLDGCRCITDFSLAALADMYNLRKLGLSQCDLITNEGLKALEHLQ 203
Query: 253 NLESLNLDSC-GIGDEGLVNLTGL----CNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L+ ++L C + D G+ LT NL+ L L+ + G+++L + N++++ L
Sbjct: 204 RLQEISLGWCRQVSDAGIQTLTAQPGRSSNLQILRLARCPITDEGVQYLGKIRNVKTLEL 263
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS---LTGLTHLDLFGARITDSG 364
++ + D L KL L L+ LNLD+ I D + + L L LDL + I+D G
Sbjct: 264 CYSAVKDIHLTKLVNLPMLEELNLDSCPIGDLAIQHFANHNVLPNLVSLDLADSDISDLG 323
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ F L+ L + +++ G++H+ S LT L
Sbjct: 324 MVQIAKFTKLKRLSLFYCSISNRGLRHL-------------------------SILTELR 358
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LN+ + I+ GLRHL+ LK L+SL + S +VT
Sbjct: 359 VLNLDSRDISDDGLRHLQHLKQLKSLDIFSGRVT 392
>gi|428173313|gb|EKX42216.1| hypothetical protein GUITHDRAFT_74106 [Guillardia theta CCMP2712]
Length = 527
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 170/481 (35%), Positives = 260/481 (54%), Gaps = 33/481 (6%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+P ++ Q +F+ L YSR L + L R C D L YP + D W++V+ +L
Sbjct: 42 IPNEMVQALFDSLAYSRRLEKSHLPLLSRIC---DASLFAYPLIADDWLEVLGESFHALT 98
Query: 61 SVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+D+S VTD G+ L+ +L+S+ C+++ D LE + LS+L+ LS +
Sbjct: 99 RLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACTRM 158
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ G+ + L+ + L+LER TR+ G+ +L+ L L LN+ W N DS + L
Sbjct: 159 ASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDS-FESLRS 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA------------------- 219
L LK L + T+ G+ L L +L L + C V A
Sbjct: 218 LPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLSQ 277
Query: 220 -------CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
L++L L L L L +++D G S L +L++LNLD C + + GL +
Sbjct: 278 CEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYLSSLWDLKTLNLDCCHVTNGGLQTI 337
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL+ L+LSD V SSGL L+GLT L+S+NL TG+SD + + GL++L LNLD
Sbjct: 338 ANLTNLENLDLSDNVVTSSGLALLTGLTTLKSLNLFSTGVSDAGVIHVTGLTNLVRLNLD 397
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+R ITD+GLA ++ LT L LDLFGA++T G Y+ +L SLE+CGGGLTD ++ +
Sbjct: 398 SRLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMREL 457
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K L+ + LN+SQN +L++ + +S ++ L SLN++ + +S G RHL +L SL L
Sbjct: 458 KRLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCL 517
Query: 453 E 453
Sbjct: 518 R 518
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 164/330 (49%), Gaps = 28/330 (8%)
Query: 133 LVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS 190
L +LD+ C + G+ L+ L L S+ ++ C + D+ ++ + + +C+
Sbjct: 97 LTRLDMSNCIHVTDEGISRLRSLQSLRSIKLENCLRLGDATLEVIGELSSLSHLSVSACT 156
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++ SG++ L L ++T LNLE + + ++SL L +L LNL DD E
Sbjct: 157 RMASSGVSCLSQLVRMTDLNLERLTRLDSEGIESLEKLTNLRILNLGWTNADDDSFESLR 216
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLS 308
L L+ LN+ +C ++GL L L L+ L + +VG+ S L LS L L+ ++LS
Sbjct: 217 SLPRLKRLNVCACPFTEDGLQALCSLTQLESLRMCSCKVGATSALVELSSLGKLKLLDLS 276
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ D L AL L+ L L L R+TD G YL
Sbjct: 277 -----------------------QCEHVGDQTLEALRGLSDLKILLLAHTRVTDIGLGYL 313
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ +L++L + +T+ G++ I +L++L L+LS N +T L L++GLT L SLN+
Sbjct: 314 SSLWDLKTLNLDCCHVTNGGLQTIANLTNLENLDLSDNV-VTSSGLALLTGLTTLKSLNL 372
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++ ++ AG+ H+ L NL L L+S +T
Sbjct: 373 FSTGVSDAGVIHVTGLTNLVRLNLDSRLIT 402
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DLS + VT SGL L + L+SL+ F +SD G+ H+ GL+NL L+ +
Sbjct: 341 TNLENLDLSDNVVTSSGLALLTGLTTLKSLNL-FSTGVSDAGVIHVTGLTNLVRLNLD-S 398
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------------------NLK 152
IT G+ +GL NL +LDL H G + LK
Sbjct: 399 RLITDSGLACISGLTNLQELDLFGAKVTHHGTIYIGLLTSLTSLELCGGGLTDEAMRELK 458
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++ +LN+ +++ P+S ++ L SL I+ + + G +L LT L L
Sbjct: 459 RLTRMRNLNVSQNESLSNGSFIPMSRMSLLTSLNIAGTNFSSDGARHLTIFTDLTSLCLR 518
Query: 213 GCPVTAACL 221
++ CL
Sbjct: 519 FDCLSRTCL 527
>gi|46446666|ref|YP_008031.1| hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400307|emb|CAF23756.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 734
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 167/451 (37%), Positives = 251/451 (55%), Gaps = 13/451 (2%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ L ++C L+ L + GV D + + + ++L +DLS + +TD GL HL
Sbjct: 237 LTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHL-TPLTTLQYLDLSDCEKLTDDGLAHL 295
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L+ L L+ R + G+ L L L+
Sbjct: 296 TPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAHLTPLTGLQHLN 355
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L RC + GL +LK L L+ LN+ C +TD+ + L+ LT L+ L +S C+ +TD+
Sbjct: 356 LNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDA 415
Query: 196 GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTN 253
G+A+L L L L+L C T A L L++L L YLNL+ + L+D G + LT
Sbjct: 416 GLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTA 475
Query: 254 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 310
L+ LNL +C D GL +LT L L+ L+LS + + GL HL+ LT L+ + LS+
Sbjct: 476 LQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCD 535
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
++D L L L++L+ L+L +ITD GLA LT LTGL HL L + ++TD+G A+L
Sbjct: 536 KLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLT 595
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L+ L + LTDAG+ H+ L++L L L+ LTD L ++ LT L L +
Sbjct: 596 PLTTLQYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTL 655
Query: 429 SN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ ++T GL HLKPL L+ L L C++T
Sbjct: 656 NRCEKLTDDGLAHLKPLAALQYLDLSYCEIT 686
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 203/374 (54%), Gaps = 9/374 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+TD+GL HLK + LQ L+ + C +++D GL HL L+ L L R N++T G+
Sbjct: 361 DLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHLDLSRCNSLTDAGLAHL 420
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C GL +L L L+ LN+ +TD+ + L+ LT L+ L
Sbjct: 421 TPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTDAGLAHLTPLTALQHLN 480
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ +C K TD+G+A+L L L L+L C +T L L+ L L L L+ C +L+D
Sbjct: 481 LCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLTGLQRLVLSWCDKLTDA 540
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
G + LT L+ L+L C I D GL +LT L L+ L L Q+ +GL HL+ LT L
Sbjct: 541 GLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLAHLTPLTTL 600
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-AR 359
+ + L S ++D L LA L++L+ L L D R++TDTGLA LT LT L HL L +
Sbjct: 601 QYLYLGSCNRLTDAGLAHLAPLTALQHLALNDCRKLTDTGLAHLTPLTALQHLTLNRCEK 660
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+TD G A+L+ L+ L++ +TDAG+ H+ L +L L+L +TD LE
Sbjct: 661 LTDDGLAHLKPLAALQYLDLSYCEITDAGLAHLTHLMALQRLDLYGR-EITDDGLERFET 719
Query: 420 LTGLVSLNVSNSRI 433
L +L + R
Sbjct: 720 LAASFNLEIRLDRF 733
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 183/338 (54%), Gaps = 35/338 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L C
Sbjct: 225 KIETLNFSENARLTDAHLLTLKNCKNLKILHFKKCWGVTDAGLAHLTPLTTLQYLDLSDC 284
Query: 215 ------------PVTA--------------ACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
P+T A L L+ L +L +LNLNRC+ L D G
Sbjct: 285 EKLTDDGLAHLTPLTGLQHLDLSWCSSLTDAGLAHLTPLTALQHLNLNRCEYLKDAGLAH 344
Query: 248 FSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 305
+ LT L+ LNL+ C + D GL +L L L+ L LS+ ++ +GL HL+ LT L+ +
Sbjct: 345 LTPLTGLQHLNLNRCKDLTDAGLSHLKPLTALQHLNLSECWKLTDAGLAHLTPLTALQHL 404
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
+LS ++D L L L++L+ L+L D + TD GLA LTSLTGL +L+L + +TD
Sbjct: 405 DLSRCNSLTDAGLAHLTPLTALQHLDLSDCQNFTDAGLAHLTSLTGLQYLNLSEYKNLTD 464
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G A+L L+ L +C TD G+ H+ L++L L+LS NLTD L ++ LT
Sbjct: 465 AGLAHLTPLTALQHLNLCNCRKFTDNGLAHLTPLTALQHLDLSHCKNLTDDGLAHLAPLT 524
Query: 422 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
GL L +S ++T AGL HL PL L+ L L C++T
Sbjct: 525 GLQRLVLSWCDKLTDAGLAHLTPLTALQYLDLSCCEIT 562
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 34/221 (15%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W D + G ++L +DLS ++TD+GL HL + LQ L +C Q++D GL
Sbjct: 533 WCDKLTDAGLAHLTPLTALQYLDLSCCEITDAGLAHLTPLTGLQHLVLVYCWQLTDAGLA 592
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL L+ L L N +T GL +L L L+ L
Sbjct: 593 HLTPLTTLQYLYLGSCNRLTD------------------------AGLAHLAPLTALQHL 628
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+ C +TD+ + L+ LT L+ L ++ C K+TD G+A+LK L L L+L C +T A
Sbjct: 629 ALNDCRKLTDTGLAHLTPLTALQHLTLNRCEKLTDDGLAHLKPLAALQYLDLSYCEITDA 688
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L L+ L +L L+L +++DDG E+F L S NL+
Sbjct: 689 GLAHLTHLMALQRLDLYGREITDDGLERFETLA--ASFNLE 727
>gi|298709085|emb|CBJ31033.1| Hypothetical leucine rich repeat protein [Ectocarpus siliculosus]
Length = 573
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 178/554 (32%), Positives = 266/554 (48%), Gaps = 82/554 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQ---GSS 58
LPR++ + L R L+ +L AFRDC + L LG+ GV + W+ + G
Sbjct: 22 LPREVVDALLGSLTQHRALSSYALRAFRDCEVTSLALGECRGVRNGWVRELLQATPCGRC 81
Query: 59 LLSVDLSG-SDVTDSGL-----------IHLKDCSNL--------------QSLDFNFCI 92
++++DLS + +TD+GL L+ CS L ++L C
Sbjct: 82 IVTLDLSSCTGLTDTGLSDLPALKSLESASLRRCSGLGTEATLCLSNSPGLETLSLAHCP 141
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
+ D + +L GLS L SL I+ +G++ L +L L+ RC HG V+ L
Sbjct: 142 LLDDAAVGNLAGLSRLRSLELEGCENISDEGLRLACRLPSLTCLNASRC---HGLTVDGL 198
Query: 152 KGLMK----LESLNIKWCNCITDSDMKP-------------------------------- 175
GL + L+ LN+ WC +
Sbjct: 199 AGLEQAAGGLKRLNLGWCAGLVRGSAAAGGRGGEESDDEDDEDDEDGGGDSDDEGLGGGR 258
Query: 176 ---------LSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL 224
L L L+ + ++ S + + G++ L G L L+L GC +T + +L
Sbjct: 259 RRRRRGRWVLPVLPKLERVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESGAHTL 318
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
SAL L L+L+ C++ E +L L +LNLD C +GD G+ L+ L L+ L L+
Sbjct: 319 SALQDLETLDLSNCRVYSCVEELAQKLPGLTALNLDRCNVGDTGVRALSSLTKLERLNLA 378
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
DT + +G+ HL+ LT L +NL F I+D L LA LS+L LNLD R + D G+ L
Sbjct: 379 DTSITDAGMTHLAPLTRLRDLNLFFCHITDAGLGPLAALSNLVRLNLDTRDVGDAGMVQL 438
Query: 345 TSLTGLTHLDLFGARITDSGAAY-LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
T L L LD+F A ITD G A+ L L +LE+C G LTD G+ H+ + SLT LN+
Sbjct: 439 TRLRLLESLDVFSASITDFGVAHGLCRLPCLTTLEVCSGRLTDRGLYHLSRVKSLTRLNV 498
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
SQN +T + + LT L SLN+S+ IT + L L L NL SL++ C++ D++
Sbjct: 499 SQNFGITAAGVRHVGTLTRLRSLNLSSCNITPSSLNSLTGLVNLESLSVFGCRLEMTDLE 558
Query: 464 RLQSRDLPNLVSFR 477
L+ + LPNL R
Sbjct: 559 LLREK-LPNLRVVR 571
>gi|46446659|ref|YP_008024.1| hypothetical protein pc1025 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400300|emb|CAF23749.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 695
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 219/397 (55%), Gaps = 10/397 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L+ L L+ + +T G+ A
Sbjct: 238 LTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLA 297
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L KL+L R ++ GL +LK L L+ L++ +C +TD + L LT L+ L +
Sbjct: 298 PLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDL 357
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
C K+TD G+ +L+ L L LNL C T A L LS L L +LNL C L+D G
Sbjct: 358 RYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGL 417
Query: 246 EKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 303
LT L+ LNL C + D GLV+L L L+ L LS+ + +GL HL LT L+
Sbjct: 418 VHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQ 477
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARI 360
+NLS+ ++D L L L+ L+ LNL + +TD GLA LT LTGL HLDL + +++
Sbjct: 478 HLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKL 537
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD G A+L+ L+ L + LTDAG+ H+K L+ L LNLS NLTD L +
Sbjct: 538 TDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDGLIHLMP 597
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L + +T AGL HL PL L+ L L C
Sbjct: 598 LMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHC 634
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 241/444 (54%), Gaps = 17/444 (3%)
Query: 17 SRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGL 74
+R LT+ L ++C L+ L L + + D + + ++L ++LS S ++TD+GL
Sbjct: 235 NRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPL-TALQYLNLSASYNLTDAGL 293
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
+HL + LQ L+ Q++D GL HL+ L+ L L +T G+ L L
Sbjct: 294 VHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQ 353
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSK 191
+LDL C ++ GLV+L+ L L+ LN+ W S + PL+GL +L + C
Sbjct: 354 RLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYE--CIN 411
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G+ +LK L L LNL C +T A L L L L +LNL+ C L+D G
Sbjct: 412 LTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLK 471
Query: 250 RLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
LT L+ LNL C + D GLV+L L L+ L LS+ + +GL HL+ LT L+ ++L
Sbjct: 472 FLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDL 531
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 364
S+ + ++D L L L++L+ LNL + R +TD GL L LTGL HL+L + +TD G
Sbjct: 532 SYCSKLTDDGLAHLKPLTALQCLNLSNCRNLTDAGLVHLKLLTGLQHLNLSDYKNLTDDG 591
Query: 365 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+L LR LE+ G LTDAG+ H+ L++L LNLS +LTD L ++ LTGL
Sbjct: 592 LIHLMPLMALRHLELLGCENLTDAGLVHLTPLTALQHLNLSHCDDLTDAGLAHLTSLTGL 651
Query: 424 VSLNVSN-SRITSAGLRHLKPLKN 446
L + +T AGL K + N
Sbjct: 652 QHLELLGCENLTDAGLARFKTVAN 675
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 181/320 (56%), Gaps = 9/320 (2%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C +TD + L+ LT L+ L +S S +TD+G+ +L L
Sbjct: 241 AHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSASYNLTDAGLVHLAPLT 300
Query: 205 KLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L LNL +T A L L L +L L+L+ C+ L+DDG LT L+ L+L C
Sbjct: 301 ALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAHLRPLTALQRLDLRYC 360
Query: 263 -GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKL 320
+ D+GLV+L L L+ L LS+ +GL HLS LT L+ +NL ++D L L
Sbjct: 361 EKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLNLYECINLTDAGLVHL 420
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLE 378
L+ L+ LNL ++TD GL L LTGL HL+L +TD+G +L+ L+ L
Sbjct: 421 KLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLVHLKFLTGLQHLN 480
Query: 379 ICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSA 436
+ LTDAG+ H+K L+ L LNLS NLTD L ++ LTGL L++S S++T
Sbjct: 481 LSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTGLQHLDLSYCSKLTDD 540
Query: 437 GLRHLKPLKNLRSLTLESCK 456
GL HLKPL L+ L L +C+
Sbjct: 541 GLAHLKPLTALQCLNLSNCR 560
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 169/315 (53%), Gaps = 9/315 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +TD+ + L NLK L + C +TD G+A+L L L LNL
Sbjct: 226 KIEGLNFSNNRYLTDAHLLILKNCKNLKVLHLEKCRALTDDGLAHLTPLTALQYLNLSAS 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L+ L +L LNL R QL+D G LT L+ L+L C + D+GL +
Sbjct: 286 YNLTDAGLVHLAPLTALQKLNLGRYNQLTDAGLAHLKPLTALQRLDLSFCEDLTDDGLAH 345
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L L+ L+L ++ GL HL LT L+ +NLS + L L+ L+ L+ LN
Sbjct: 346 LRPLTALQRLDLRYCEKLTDDGLVHLRPLTALQRLNLSNCWHTGAGLSHLSPLTGLQHLN 405
Query: 331 L-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDA 387
L + +TD GL L LTGL HL+L + +TD+G +L+ L+ L + LTDA
Sbjct: 406 LYECINLTDAGLVHLKLLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDA 465
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
G+ H+K L+ L LNLS LTD L + LTGL LN+SN + +T AGL HL PL
Sbjct: 466 GLVHLKFLTGLQHLNLSYCDELTDAGLVHLKLLTGLQHLNLSNCNNLTDAGLAHLTPLTG 525
Query: 447 LRSLTLESCKVTAND 461
L+ L L C +D
Sbjct: 526 LQHLDLSYCSKLTDD 540
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 33 LQDLCLGQYPGVND----KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
LQ L L Y + D M ++A + LL + ++TD+GL+HL + LQ L+
Sbjct: 576 LQHLNLSDYKNLTDDGLIHLMPLMALRHLELLGCE----NLTDAGLVHLTPLTALQHLNL 631
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+ C ++D GL HL L+ L L +T G+ F + N + L ++R
Sbjct: 632 SHCDDLTDAGLAHLTSLTGLQHLELLGCENLTDAGLARFKTVANSLYLIIKR 683
>gi|46447560|ref|YP_008925.1| hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401201|emb|CAF24650.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 761
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 173/491 (35%), Positives = 268/491 (54%), Gaps = 42/491 (8%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+ I + F+ VY LT L A +DC L+ L L + D ++ + + ++L +
Sbjct: 194 KKIERLNFSNQVY---LTNAHLLALKDCKNLKALHLEACQALTDDGLEHL-TLLTALQHL 249
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+LS ++TD+GL HL + LQ LD + C + +D GL +L L+ L L R + IT
Sbjct: 250 NLSRCKNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITD 309
Query: 122 QGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+ L+ L L L +C + GL++LK L L+ LN+ CN +TD+ ++ L+ LT
Sbjct: 310 AGLSHLTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLT 369
Query: 181 NLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC------------PVTA--------- 218
+L+ L + SC K+TD+G+A+L L L L+L C P+TA
Sbjct: 370 SLQHLNLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQC 429
Query: 219 -----ACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
A L+ L L +L YLNL++C+ L+D G E + LT L+ L+L C + D G +
Sbjct: 430 DNITNAGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAH 489
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
LT L L+ L+LS ++ +GL HL+ LT L+ ++LS ++D L L L +L+ L
Sbjct: 490 LTPLTGLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHL 549
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI-CGGGLTD 386
NL + ++TD G A L+ LT L LDL + +TD+ A+L L+ L++ LTD
Sbjct: 550 NLSSCYKLTDAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTD 609
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+K L+ L LNL LTD L ++ L+GL L++S+ ++T AGL HLK L
Sbjct: 610 AGLVHLKLLTDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLT 669
Query: 446 NLRSLTLESCK 456
+L+ L L C+
Sbjct: 670 DLQYLNLSRCE 680
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 231/399 (57%), Gaps = 11/399 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GLIHLK + LQ L+ + C +++D GLEHL L++L L+ +T G+
Sbjct: 331 NLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSSCKKLTDAGLAHL 390
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L LDL C ++ GL +L L L+ LN+ C+ IT++ ++ L LT L+ L
Sbjct: 391 TPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLEHLIPLTALQYLN 450
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +L L L L+L C +T A L+ L L YL+L+ C +L+D
Sbjct: 451 LSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQYLDLSHCNKLTDA 510
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G + LT L+ L+L +C + D+GL +LT L L+ L LS ++ +G HLS LT
Sbjct: 511 GLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLTDAGFAHLSPLTA 570
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-A 358
L+ ++LS+ ++D L L L++L+ L+L +TD GL L LT L +L+L G
Sbjct: 571 LQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLLTDLQYLNLRGCG 630
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L L+ L++ LTDAG+ H+K L+ L LNLS+ NLTD+ L L+
Sbjct: 631 YLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSRCENLTDEGLALL 690
Query: 418 SGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESC 455
+ LT L L + +T AGL HL PL L+ L L C
Sbjct: 691 TPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLSQC 729
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 155/440 (35%), Positives = 237/440 (53%), Gaps = 37/440 (8%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L Q + D + + ++L ++LS + +TD+GL HL ++LQ L+ +
Sbjct: 320 ALQYLSLSQCWNLTDAGL-IHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHLNLSS 378
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C +++D GL HL L L L N +T +G+ L L L+L +C I + GL
Sbjct: 379 CKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITNAGLE 438
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L L+ LN+ C +TD+ ++ L+ LT L+ L +S C K+TD+G A+L L L
Sbjct: 439 HLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLTGLQY 498
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIG 265
L+L C +T A L L+ L +L YL+L+ C +L+DDG + L L+ LNL SC +
Sbjct: 499 LDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHLTPLMALQHLNLSSCYKLT 558
Query: 266 DEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 323
D G +L+ L L+ L+LS Q + + L HL+ LT L+ ++L + ++D L L L
Sbjct: 559 DAGFAHLSPLTALQRLDLSYCQNLTDAELAHLTPLTALQRLDLRYCENLTDAGLVHLKLL 618
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI-- 379
+ L+ LNL +TD GLA LT+L+GL HLDL ++TD+G +L+ +L+ L +
Sbjct: 619 TDLQYLNLRGCGYLTDAGLAHLTTLSGLQHLDLSSCEKLTDAGLVHLKLLTDLQYLNLSR 678
Query: 380 CGG------------------------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
C LTDAG+ H+ L+ L L+LSQ NLTD L
Sbjct: 679 CENLTDEGLALLTPLTALQHLKLRYCINLTDAGLAHLTPLTGLQRLDLSQCWNLTDAGLI 738
Query: 416 LISGLTGLVSLNVSNSRITS 435
+ LT L LN+S++ I+
Sbjct: 739 HLKLLTALQHLNLSDTNISP 758
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 182/346 (52%), Gaps = 36/346 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L NLK+L + +C +TD G+ +L L L LNL C
Sbjct: 195 KIERLNFSNQVYLTNAHLLALKDCKNLKALHLEACQALTDDGLEHLTLLTALQHLNLSRC 254
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L+ L L YL+L+ C + +D G LT L+ L+L C I D GL +
Sbjct: 255 KNLTDAGLAHLTPLTGLQYLDLSHCNKFTDAGLAYLEILTALQHLDLRGCDKITDAGLSH 314
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LT L L+ L LS + +GL HL LT L+ +NLS ++D L LA L+SL+ L
Sbjct: 315 LTPLVALQYLSLSQCWNLTDAGLIHLKPLTALQYLNLSRCNKLTDAGLEHLALLTSLQHL 374
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL + +++TD GLA LT L L HLDL ++TD G +L L+ L + +T+
Sbjct: 375 NLSSCKKLTDAGLAHLTPLMALQHLDLSICNKLTDRGLTHLNPLTALQYLNLSQCDNITN 434
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN---------------- 430
AG++H+ L++L LNLSQ LTD LE ++ LT L L++S
Sbjct: 435 AGLEHLIPLTALQYLNLSQCEKLTDAGLEHLTPLTALQQLDLSWCYKLTDAGFAHLTPLT 494
Query: 431 ----------SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+++T AGL HL PL L+ L L +C K+T + + L
Sbjct: 495 GLQYLDLSHCNKLTDAGLAHLTPLTALQYLDLSNCIKLTDDGLAHL 540
>gi|46446831|ref|YP_008196.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400472|emb|CAF23921.1| hypothetical protein pc1197 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 666
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 218/396 (55%), Gaps = 9/396 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL LQ LD + C +++D GL HL L+ L L +T G+
Sbjct: 247 ITDAGLAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLT 306
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL C + GL +L LM L+ L++ WC +TD+ + L+ LT L+ L +
Sbjct: 307 LLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDL 366
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C +TD+G+A+L L L LNL C +T A L L+ L +L +LNL+R L+ G
Sbjct: 367 SNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGL 426
Query: 246 EKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 303
+ LT L+ L+L S + D GL +L L L+ L L+ ++ +GL HLS L L+
Sbjct: 427 AHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQ 486
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARI 360
++ LS+ ++ L L L +L+ L+L + +TD GLA L L L HL+L G ++
Sbjct: 487 TLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKL 546
Query: 361 TDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD+G A+L + L+ L + LTDAG+ H+K L +L L+LS NLTD+ L +
Sbjct: 547 TDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNCNNLTDEGLTHLRP 606
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S +T GL HL PL L+ L L SC
Sbjct: 607 LVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSC 642
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 225/397 (56%), Gaps = 10/397 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L F C I+D GL HL L++L L+ + IT G+
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L LDL +C+++ GL +L L L+ L + +C +TD+ + L+ LT L+ L +
Sbjct: 257 TLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLDL 316
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C +TD+G+A+L L L L+L C +T A L L++L L +L+L+ C+ L+D G
Sbjct: 317 SNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDAG 376
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
+ L L+ LNL C + D GL +LT L L+ L LS + +GL HL+ LT L+
Sbjct: 377 LAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGLQ 436
Query: 304 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARI 360
++LS + + D L L L +L+ LNL ++TD GLA L+ L L L L + +
Sbjct: 437 HLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQNL 496
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
T +G A+L+ L+ L++ LTDAG+ H++ L +L LNL+ LTD L ++
Sbjct: 497 TGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLTS 556
Query: 420 LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S ++T AGL HLKPL L+ L L +C
Sbjct: 557 LMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNC 593
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 192/372 (51%), Gaps = 12/372 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD+GL HL + LQ LD + C ++D GL HL L L L +T G+
Sbjct: 295 ENLTDAGLAHLTLLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAH 354
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L L LDL C + GL +L LM L+ LN+ WC +TD+ + L+ LT L+ L
Sbjct: 355 LTSLTGLQHLDLSNCKNLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHL 414
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S +T +G+A+L L L L+L G + A L L L +L +LNL C +L+D
Sbjct: 415 NLSRYNLTYAGLAHLTSLTGLQHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDA 474
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G S L L++L L C + GL +L L L+ L+LS+ + +GL HL L
Sbjct: 475 GLAHLSPLKALQTLGLSWCQNLTGAGLAHLKPLVALQYLDLSNCNNLTDAGLAHLRPLVA 534
Query: 302 LESINLSFTG---ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L+ +NL TG ++D L L L +L+ LNL ++TD GLA L L L HLDL
Sbjct: 535 LQHLNL--TGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSN 592
Query: 358 AR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+TD G +LR L+ L + LTD G+ H+ L++L L+LS NLTD L
Sbjct: 593 CNNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTDAGLAH 652
Query: 417 ISGLTGLVSLNV 428
+ ++L +
Sbjct: 653 FKTVAASLNLKI 664
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 175/299 (58%), Gaps = 11/299 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSL 224
+TD+ + L NLK L +C +TD+G+A+L L L LNL C +T A L L
Sbjct: 197 LTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWC-ITDAGLAHL 255
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 282
+ L +L +L+L++C +L+DDG + LT L+ L L+ C + D GL +LT L L+ L+
Sbjct: 256 TTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGLQHLD 315
Query: 283 LSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDT 339
LS+ + + +GL HL+ L L+ ++LS+ ++D L L L+ L+ L+L + + +TD
Sbjct: 316 LSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKNLTDA 375
Query: 340 GLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
GLA LTSL L HL+L + ++TD+G A+L L+ L + LT AG+ H+ L+ L
Sbjct: 376 GLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTSLTGL 435
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L+LS + L D L + L L LN++ ++T AGL HL PLK L++L L C+
Sbjct: 436 QHLDLSGSRKLIDAGLAHLRPLVALQHLNLTGCWKLTDAGLAHLSPLKALQTLGLSWCQ 494
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 7/240 (2%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSG 292
N L+D NL+ L+ +C I D GL +LT L +L+ L LS + +G
Sbjct: 192 FNNIYLTDAHLLALKNCKNLKILHFKNCRVITDAGLAHLTPLTSLQRLNLSKLWCITDAG 251
Query: 293 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
L HL+ L L+ ++LS + ++D L L L++L+ L L+ +TD GLA LT LTGL
Sbjct: 252 LAHLTTLKALQHLDLSQCSKLTDDGLAHLTPLTALQHLGLNYCENLTDAGLAHLTLLTGL 311
Query: 351 THLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCN 408
HLDL + +TD+G A+L + L+ L++ LTDAG+ H+ L+ L L+LS N
Sbjct: 312 QHLDLSNCKNLTDAGLAHLTSLMALQHLDLSWCLKLTDAGLAHLTSLTGLQHLDLSNCKN 371
Query: 409 LTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LTD L ++ L L LN+S ++T AGL HL PL L+ L L +T + L S
Sbjct: 372 LTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLTPLTALQHLNLSRYNLTYAGLAHLTS 431
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L+G +TD+GL HL LQ L+ ++C++++D GL HL+ L L L
Sbjct: 534 ALQHLNLTGCWKLTDAGLAHLTSLMALQHLNLSWCLKLTDAGLAHLKPLVALQHLDLSNC 593
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N +T +G+ L+ L L+L R GL +L L L+ L++ C +TD
Sbjct: 594 NNLTDEGLTHLRPLVALQHLNLSRYNLTDDGLAHLTPLTTLQYLDLSSCYNLTD------ 647
Query: 177 SGLTNLKSLQIS 188
+GL + K++ S
Sbjct: 648 AGLAHFKTVAAS 659
>gi|46447549|ref|YP_008914.1| hypothetical protein pc1915 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401190|emb|CAF24639.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 683
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/412 (37%), Positives = 233/412 (56%), Gaps = 12/412 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C ++D GL HL L+ L L +T G+
Sbjct: 261 NLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHL 320
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L LDL C I GL +L L L++L++ C +TD+ + L+ LT L+ L
Sbjct: 321 TPLTALQHLDLRVCKNITDAGLAHLAPLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLN 380
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+ C +TD+G+ +L+ L L L L C +T L L+ L +L +LNL+RC +L+D
Sbjct: 381 LYFCFNLTDAGLVHLRPLTALQTLGLSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDA 440
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G + LT L+ LNL C + D+GL +L L L+ L LS ++ +GL HL+ LT
Sbjct: 441 GLAHLTPLTALQHLNLSYCENLTDDGLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTA 500
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 359
L+ +NLS ++D L +L L++L+ L+L +TD GLA LT L+GL HL L +
Sbjct: 501 LQHLNLSRCYKLTDAGLARLTPLTALQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCK 560
Query: 360 -ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L L+ L + LTD G+ H+ L++L L+LS+ +LTD L +
Sbjct: 561 YLTDAGLAHLTLLTALQYLALANCKNLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHL 620
Query: 418 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
+ LTGL LN+S R +T AGL HL PL L+ L L C ++T + + R ++
Sbjct: 621 TPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQCSRLTDDGLDRFKT 672
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 205/396 (51%), Gaps = 35/396 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ LD + C ++D GL HL L+ L L R IT G+
Sbjct: 286 NLTDAGLAHLAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCKNITDAGLAHL 345
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L L LDL C + GL L L L+ LN+ +C +TD+ + L LT L++L
Sbjct: 346 APLTALQNLDLSDCGHLTDAGLAYLTPLTALQHLNLYFCFNLTDAGLVHLRPLTALQTLG 405
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C +TD+G+A+L L L LNL C +T A L L+ L +L +LNL+ C+ L+DD
Sbjct: 406 LSQCWNLTDTGLAHLTPLTALQHLNLSRCYKLTDAGLAHLTPLTALQHLNLSYCENLTDD 465
Query: 244 GCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G + LT L+ L L C + D GL +LT L L+ L LS ++ +GL L+ LT
Sbjct: 466 GLAHLAPLTALQYLRLSQCWKLTDAGLAHLTPLTALQHLNLSRCYKLTDAGLARLTPLTA 525
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNL--------------------------DAR 334
L+ ++L + ++D L +L LS L+ L L + +
Sbjct: 526 LQHLDLKYCINLTDAGLARLTPLSGLQHLALTNCKYLTDAGLAHLTLLTALQYLALANCK 585
Query: 335 QITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 392
+TD GLA LT LT L HLDL R +TD+G A+L L+ L + LTDAG+ H+
Sbjct: 586 NLTDVGLAHLTPLTALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHL 645
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
LS L L LSQ LTD L+ L ++L +
Sbjct: 646 SPLSVLQHLALSQCSRLTDDGLDRFKTLATSLNLEI 681
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
A +TD+ L+N KNL+ L + G LTDAG+ H+ L+ L LNLS NLTD L
Sbjct: 235 AHLTDAHLLVLKNCKNLKVLYLQGCRNLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAH 294
Query: 417 ISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
++ LT L L++S+ R +T GL HL PL L+ L L CK
Sbjct: 295 LAPLTALQYLDLSHCRNLTDTGLAHLTPLTALQHLDLRVCK 335
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L +DLS +TD+GL HL + LQ L+ ++C ++D GL HL LS L L+ +
Sbjct: 599 TALQHLDLSECRHLTDAGLAHLTPLTGLQHLNLSWCRNLTDAGLAHLSPLSVLQHLALSQ 658
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G+ F L + L++ R
Sbjct: 659 CSRLTDDGLDRFKTLATSLNLEIVR 683
>gi|348682865|gb|EGZ22681.1| hypothetical protein PHYSODRAFT_491927 [Phytophthora sojae]
Length = 648
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 237/513 (46%), Gaps = 45/513 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMD-VIASQGSSLL 60
LP +++ + L L + +A L + L GV D W D V + L
Sbjct: 142 LPPELAASVLQWLKRHYVLDKPQFQALAPFLLLEWSLADLQGVEDSWFDGVPQTTLQQLK 201
Query: 61 SVDLSG-----------------------------SDVTDSGLIHLKDCSNLQSLDFNFC 91
S+D+SG + +T + L+ + L +L+ + C
Sbjct: 202 SIDVSGCIHLHQLGAEWGYATTKLPELLAASFQGCTGLTKESIEMLRFSTKLAALNLSGC 261
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+ + D L+ L L LTSL +T +G+K A + L KL + RC ++ +
Sbjct: 262 VNVDDKSLKALSELEQLTSLQLVGCRKLTDKGVKYLAKMAKLEKLRIARCRKLTDAALED 321
Query: 152 KGLM--KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLKGLQK 205
+M KL L++ C K L + +KSL++ C + D G++ L GL
Sbjct: 322 FAMMFPKLRELDVANCRL----SEKALQYIGQIKSLEVLVIRGCQDICDDGMSSLSGLAN 377
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L + C + + L L L ++ LTNL L L C I
Sbjct: 378 LKYFDARHCSKIHSIPTEWTQLEVLL---LGYTAFAESDAAVLQYLTNLHELELRKCRIM 434
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLS 324
G ++ L +L+ LEL +T + SGL + + +L+++N+S T ISD LA L
Sbjct: 435 KRGFQFISRLTHLERLELGETALTDSGLLEICNSAKSLKALNISNTEISDNGAAGLAKLK 494
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L+ L LD IT+ LA L+ L L LDLFGA ITD+G +L L+ L ICGG +
Sbjct: 495 ELRILRLDTPGITNRALANLSFLARLERLDLFGANITDNGLMHLVPLHKLQELSICGGNI 554
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D GV I L+SLT LNLSQN N+ K+L + LTGL LN+SN+ I++ LRHL L
Sbjct: 555 GDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRALTGLRCLNLSNTGISALSLRHLSSL 614
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
K L+SL++ C ++ I L+ LP L R
Sbjct: 615 KELQSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
>gi|46447653|ref|YP_009018.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401294|emb|CAF24743.1| hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 959
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 224/401 (55%), Gaps = 12/401 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL +L+ LQ L+ N C +++D GL HL+ L LT L+ + + +T G+
Sbjct: 403 NITDNGLAYLRPLIALQGLNLNGCKKLTDAGLVHLKSLVTLTYLNLSQCDDLTDAGLAHL 462
Query: 128 AGLINLVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C GL +L L+ L++L++ +C +TD + L L LK L
Sbjct: 463 TPLVALQHLDLSFCCYNITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQL 522
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+ +CS +T +G+A+L L L L+L C +T L L L +L YL+L+ C +L+D
Sbjct: 523 NLWACSNLTGAGLAHLTPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTD 582
Query: 243 DGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 300
G + L L+ LN+ SC + D+GL +L L L+ L LS ++ GL HL+ L
Sbjct: 583 AGLAHLTSLITLQQLNISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLV 642
Query: 301 NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG- 357
NL ++LS G ++D L LA L +L+ L+L+ +TD GLA L +L L L L
Sbjct: 643 NLTHLSLSECGNLTDAGLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSAC 702
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+TD+G A+L L+ L + G LT G+ H+ L++LT L+LS NLTD L
Sbjct: 703 GNLTDAGLAHLTPLVALQQLNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAH 762
Query: 417 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
++ L L LN+S+ + T AGL HLKPL L+ L+L CK
Sbjct: 763 LTTLVALTYLNLSDCNNFTGAGLTHLKPLVALQYLSLSGCK 803
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/408 (36%), Positives = 223/408 (54%), Gaps = 17/408 (4%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ+LD +FC +++D GL HL+ L L L+ + +T G+
Sbjct: 479 NITDAGLAHLTPLVALQNLDLSFCYKLTDDGLAHLKPLVALKQLNLWACSNLTGAGLAHL 538
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LI L LDL C + GL +LK L+ L+ L++ C +TD+ + L+ L L+ L
Sbjct: 539 TPLIALKHLDLGFCYGLTDDGLAHLKPLVALQYLSLSGCKKLTDAGLAHLTSLITLQQLN 598
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
I SC+ +TD G+A+LK L L LNL C +T L L++L +L +L+L+ C L+D
Sbjct: 599 ISSCANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDA 658
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTN 301
G + L L+ L+L+ C + D GL +L L L+ L LS + +GL HL+ L
Sbjct: 659 GLAHLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVA 718
Query: 302 LESINLS----FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLF 356
L+ +NLS TG+ L L L++L L+L A +TD GLA LT+L LT+L+L
Sbjct: 719 LQQLNLSGCKKLTGV---GLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLS 775
Query: 357 GA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
T +G +L+ L+ L + G LTDAG+ ++K L +L LNL +TD L
Sbjct: 776 DCNNFTGAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGL 835
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ L L L++S ++T GL HLKPL L L+L C +D
Sbjct: 836 THLMSLVALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDD 883
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 204/393 (51%), Gaps = 12/393 (3%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
AL+ L LG G+ D + + +L + LSG +TD+GL HL LQ L+ +
Sbjct: 543 ALKHLDLGFCYGLTDDGLAHLKPL-VALQYLSLSGCKKLTDAGLAHLTSLITLQQLNISS 601
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL+ L L L+ +T G+ L+NL L L C + GL
Sbjct: 602 CANLTDDGLAHLKPLIALQQLNLSSCKKLTGVGLAHLTSLVNLTHLSLSECGNLTDAGLA 661
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ L++ +C +TD+ + L L L+ L +S C +TD+G+A+L L L
Sbjct: 662 HLAPLVALQQLDLNFCYNLTDAGLAHLITLVALQQLYLSACGNLTDAGLAHLTPLVALQQ 721
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IG 265
LNL GC +T L L++L +L +L+L+ C L+DDG + L L LNL C
Sbjct: 722 LNLSGCKKLTGVGLAHLTSLATLTHLSLSACANLTDDGLAHLTTLVALTYLNLSDCNNFT 781
Query: 266 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL 323
GL +L L L+ L LS ++ +GL +L L L+ +NL I+D L L L
Sbjct: 782 GAGLTHLKPLVALQYLSLSGCKKLTDAGLAYLKPLVALQQLNLRGCKKITDAGLTHLMSL 841
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG 381
+L+ L+L +++TD GLA L L LTHL L ++TD G A+L L L +
Sbjct: 842 VALQCLSLSGCKKLTDDGLAHLKPLVALTHLSLGECVKLTDDGLAHLTPLLALTHLNLSD 901
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
LT AG+ H+ L +LT ++L+ N TD T
Sbjct: 902 CNNLTVAGLAHLTPLENLTYVDLNNCNNFTDVT 934
>gi|306012373|gb|ADM75240.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012405|gb|ADM75256.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 328 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 387 AGVKHIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
++ L+D E S +T L SLN+ + + + GL +L L NL L L +V +R
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 HL--SGLTNLESINL 307
L + L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
>gi|306012335|gb|ADM75221.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012337|gb|ADM75222.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012341|gb|ADM75224.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012343|gb|ADM75225.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012345|gb|ADM75226.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012347|gb|ADM75227.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012349|gb|ADM75228.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012353|gb|ADM75230.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012355|gb|ADM75231.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012357|gb|ADM75232.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012361|gb|ADM75234.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012363|gb|ADM75235.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012365|gb|ADM75236.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012367|gb|ADM75237.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012369|gb|ADM75238.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012375|gb|ADM75241.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012377|gb|ADM75242.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012379|gb|ADM75243.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012383|gb|ADM75245.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012385|gb|ADM75246.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012387|gb|ADM75247.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012389|gb|ADM75248.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012393|gb|ADM75250.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012399|gb|ADM75253.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012407|gb|ADM75257.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012409|gb|ADM75258.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012411|gb|ADM75259.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012413|gb|ADM75260.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T L+SLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 328 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SLNL +TD L ++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 387 AGVKHIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
++ L+D E S +T L SLN+ + + + GL +L L NL L L +V +R
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEIR 121
Query: 295 HL--SGLTNLESINL 307
L + L NL + L
Sbjct: 122 KLQATALPNLAGVRL 136
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T ++ +G+ L+ L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALEFISGMTALISLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
>gi|46447144|ref|YP_008509.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400785|emb|CAF24234.1| hypothetical protein pc1510 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 670
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 199/391 (50%), Gaps = 30/391 (7%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ LD + C ++D GL HL L L L +T G+
Sbjct: 303 NLTDAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNLTDTGLAHL 362
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LINL L+L C GL +L L+ L+ LN+ C +TD+ + L+ L NL+ L +
Sbjct: 363 KSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGC 245
S C+ +TD+G+AYL L L LNL C + A L L+ L +L LNL+ C L+D G
Sbjct: 423 SDCTNLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGL 482
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLE 303
S L L+ L+LD C + D GL +LT L LK L LS + +GL HL+ L L+
Sbjct: 483 AHLSTLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALK 542
Query: 304 SINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARIT 361
++LS+ G + D L L L +LK L+L + +TD GLA L SL L HLDL G
Sbjct: 543 HLDLSWNGDLEDAGLAHLTPLVALKYLDLSECYHLTDAGLAHLRSLVALKHLDLRGCY-- 600
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
LTDAG+ H+ L +L L+L NLTD L ++ L
Sbjct: 601 ---------------------QLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLI 639
Query: 422 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 451
L L + N RIT AGL HL LR T
Sbjct: 640 ALQDLELPNCQRITDAGLAHLASSMTLRIWT 670
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 167/324 (51%), Gaps = 29/324 (8%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L+ + TD+GL HL L+ L+ + C ++D GL HL L NL L+
Sbjct: 367 NLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCT 426
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+ + L+ L L+L C I GL +L L+ L+ LN+ +C +TD+ + LS
Sbjct: 427 NLTDTGLAYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLS 486
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL 235
L L+ L + C K+TD G+A+L L L LNL C +T A L L+ L +L +L+L
Sbjct: 487 TLVTLQHLDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCHNLTGAGLAHLTPLVALKHLDL 546
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 294
S N D + D GL +LT L LK L+LS+ + +GL
Sbjct: 547 --------------------SWNGD---LEDAGLAHLTPLVALKYLDLSECYHLTDAGLA 583
Query: 295 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 352
HL L L+ ++L ++D + L L +LK L+L +TD GLA LTSL L
Sbjct: 584 HLRSLVALKHLDLRGCYQLTDAGIAHLTPLVALKYLDLKGCPNLTDAGLAHLTSLIALQD 643
Query: 353 LDLFG-ARITDSGAAYLRNFKNLR 375
L+L RITD+G A+L + LR
Sbjct: 644 LELPNCQRITDAGLAHLASSMTLR 667
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 140/272 (51%), Gaps = 28/272 (10%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEK 247
+ +TD+ + LK + L +L L+ C +T A L L+ L +L YL+L++C L+D G
Sbjct: 277 AHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPLVALQYLDLSKCHNLTDAG--- 333
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT L++LN G+G+ C L+DT GL HL L NL+ +NL
Sbjct: 334 LTHLTFLDALN--YLGLGE-------------CYNLTDT-----GLAHLKSLINLQHLNL 373
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGA 365
+ +D L L L +LK LNL +TD GLA LT L L L+L +TD+G
Sbjct: 374 NNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGL 433
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
AYL L+ L + L DAG+ H+ L +L LNLS NLTD L +S L L
Sbjct: 434 AYLSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYCTNLTDAGLAHLSTLVTLQH 493
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L++ ++T GL HL PL L+ L L C
Sbjct: 494 LDLDGCYKLTDIGLAHLTPLVTLKYLNLSCCH 525
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 10/219 (4%)
Query: 247 KFSRLTN-----LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGL 299
+F ++ N +E+LN ++ + D L+ L NLK L L + +GL HL+ L
Sbjct: 256 EFEKILNYFSNEVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLPHLTPL 315
Query: 300 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 357
L+ ++LS ++D L L L +L L L + +TDTGLA L SL L HL+L
Sbjct: 316 VALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNN 375
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
TD+G A+L L+ L + LTDAG+ H+ L +L LNLS NLTD L
Sbjct: 376 CNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNLSDCTNLTDTGLAY 435
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+S L L LN++ ++ AGL HL PL NL+ L L C
Sbjct: 436 LSPLVTLQHLNLNVCKLIDAGLAHLTPLVNLQQLNLSYC 474
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 368
++D L L L +L+ L+L +TD GL LT L L +L L +TD+G A+L
Sbjct: 303 NLTDAGLPHLTPLVALQYLDLSKCHNLTDAGLTHLTFLDALNYLGLGECYNLTDTGLAHL 362
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
++ NL+ L + TDAG+ H+ L +L LNLSQ NLTD L ++ L L LN+
Sbjct: 363 KSLINLQHLNLNNCNFTDAGLAHLTPLVTLKYLNLSQCYNLTDAGLAHLTPLVNLQQLNL 422
Query: 429 SN-SRITSAGLRHLKPLKNLRSLTLESCKV 457
S+ + +T GL +L PL L+ L L CK+
Sbjct: 423 SDCTNLTDTGLAYLSPLVTLQHLNLNVCKL 452
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 357 GARITDSGAAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
A +TD+ L+ KNL+ L + C LTDAG+ H+ L +L L+LS+ NLTD
Sbjct: 276 NAHLTDAHLLALKTCKNLKVLYLKKCCN--LTDAGLPHLTPLVALQYLDLSKCHNLTDAG 333
Query: 414 LELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVT 458
L ++ L L L + +T GL HLK L NL+ L L +C T
Sbjct: 334 LTHLTFLDALNYLGLGECYNLTDTGLAHLKSLINLQHLNLNNCNFT 379
>gi|46446522|ref|YP_007887.1| hypothetical protein pc0888 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400163|emb|CAF23612.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 653
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 151/399 (37%), Positives = 225/399 (56%), Gaps = 12/399 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L C I+D GL HL L+ L L +T G+
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GL +L L L+ LN+ C +TD+ + L+ LT L+ L
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+ +LK L L L+L E +T A L L+ L +L +L+L+ C +L+D
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G + LT L+ L+L C + + GLV+L L L+ L LS+ + +GL HL+ LT
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR 359
L+ ++LS + ++D L L L++L+ L+L ++TD GLA LT LT L HL L R
Sbjct: 476 LQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCR 535
Query: 360 -ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L + L+ L + GG LT AG+ H++ L +L L+LS LTD L +
Sbjct: 536 NLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHL 595
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L L L++S +T AGL HL+PL L+ L L C
Sbjct: 596 TPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYC 634
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 214/386 (55%), Gaps = 12/386 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL HL + LQ L+ + C +++D GL HL L+ L L+ + +T G+
Sbjct: 261 ITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLAHLT 320
Query: 129 GLINLVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L RC GL +L L L+ LN+ +C+ +TD+ + L LT L+ L
Sbjct: 321 PLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLNLSFCDKLTDAGLVHLKLLTGLQHLD 380
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+ ++T +G+A+L L L L+L GC +T L L+ L +L +L+L RC+ L++
Sbjct: 381 LREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDVGLAHLTPLTTLQHLDLKRCRNLTNA 440
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G LT L+ LNL C + D GL +LT L L+ L+LS +++ GL HL+ LT
Sbjct: 441 GLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTA 500
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGA- 358
L+ ++LS + ++D L L L++L+ L L R +TD GLA LT L L HL+L G
Sbjct: 501 LQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARCRNLTDAGLAHLTPLETLQHLNLSGGY 560
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++T +G A+LR L+ L++ GLTDAG+ H+ L +L L+LS LTD L +
Sbjct: 561 KLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAHLTPLVALQHLDLSYCDGLTDAGLTHL 620
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLK 442
L L L++S +T AGL H K
Sbjct: 621 RPLVALQHLDLSYCDGLTDAGLAHFK 646
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 229/418 (54%), Gaps = 14/418 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + + D + + + ++L ++LS +TD+GL HL
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHL-TPLTALQHLELSDCRKLTDAGLAHL 294
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKL 136
+ LQ L+ +FC +++D GL HL L+ L L+ R +T G+ L L L
Sbjct: 295 TPLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHL 354
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+L C ++ GLV+LK L L+ L+++ +T + + L+ LT L+ L +S C K+TD
Sbjct: 355 NLSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTD 414
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLT 252
G+A+L L L L+L+ C +T A L L L L +LNL+ C L+D G + LT
Sbjct: 415 VGLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLT 474
Query: 253 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF- 309
L+ L+L C + D+GL +LT L L+ L+LS +++ GL HL+ LT L+ + L+
Sbjct: 475 ALQHLDLSQCSKLTDDGLAHLTPLTALQHLDLSQCSKLTDDGLAHLTPLTALQHLVLARC 534
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 367
++D L L L +L+ LNL ++T GLA L L L HLDL + +TD+G A+
Sbjct: 535 RNLTDAGLAHLTPLETLQHLNLSGGYKLTGAGLAHLRPLVALQHLDLSYCNGLTDAGLAH 594
Query: 368 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L L+ L++ GLTDAG+ H++ L +L L+LS LTD L L ++
Sbjct: 595 LTPLVALQHLDLSYCDGLTDAGLTHLRPLVALQHLDLSYCDGLTDAGLAHFKFLAAII 652
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT 273
+T A L +L +L L+L +CQ ++DDG + LT L+ L L C + D GL +LT
Sbjct: 236 LTDAHLLALKDCKNLKVLHLEKCQVITDDGLAHLTPLTALQHLELSDCRKLTDAGLAHLT 295
Query: 274 GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGLSSLKSLN 330
L L+ L LS ++ +GL HL+ LT L+ +NLS + ++D L L L++L+ LN
Sbjct: 296 PLTALQHLNLSFCDKLTDAGLAHLTPLTALQHLNLSRCYYKLTDAGLAHLTPLTALQHLN 355
Query: 331 LD-ARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDA 387
L ++TD GL L LTGL HLDL +T +G A+L L+ L++ G LTD
Sbjct: 356 LSFCDKLTDAGLVHLKLLTGLQHLDLREFWELTGAGLAHLTTLTALQHLDLSGCDKLTDV 415
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
G+ H+ L++L L+L + NLT+ L + LTGL LN+S +T AGL HL PL
Sbjct: 416 GLAHLTPLTTLQHLDLKRCRNLTNAGLVHLKLLTGLQHLNLSECYHLTDAGLAHLTPLTA 475
Query: 447 LRSLTLESCKVTAND 461
L+ L L C +D
Sbjct: 476 LQHLDLSQCSKLTDD 490
>gi|306012339|gb|ADM75223.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012351|gb|ADM75229.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012359|gb|ADM75233.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012371|gb|ADM75239.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012381|gb|ADM75244.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012391|gb|ADM75249.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012395|gb|ADM75251.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012397|gb|ADM75252.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012401|gb|ADM75254.1| leucine rich repeat-like protein, partial [Picea sitchensis]
gi|306012403|gb|ADM75255.1| leucine rich repeat-like protein, partial [Picea sitchensis]
Length = 137
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 114/135 (84%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
ALTSLTGLTHLDLFGARITD G + LR FK L+SLE+CGG +TDAGVK+IKDL+S+ LN
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
LSQN +LTD LE ISG+T LVSLN+SN+R+T+AGL+HL+PLKNL SL+L++CKVT +I
Sbjct: 61 LSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVTWPEI 120
Query: 463 KRLQSRDLPNLVSFR 477
++LQ+ LPNL R
Sbjct: 121 RKLQATALPNLAGVR 135
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L +LTGL +L T G+S LR+ L+S+ L I+D ++ + L+S+
Sbjct: 1 ALTSLTGLTHLDLFGARITDYGTSCLRYFK---KLQSLELCGGSITDAGVKNIKDLTSMM 57
Query: 328 SLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SLNL +TD L +++ +T L L++ R+T++G +LR KNL SL + +T
Sbjct: 58 SLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT- 116
Query: 387 AGVKHIKDLSSLTLLNLS 404
I+ L + L NL+
Sbjct: 117 --WPEIRKLQATALPNLA 132
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
L L GL++L R IT G L L+L + G+ N+K L +
Sbjct: 1 ALTSLTGLTHLDLFGAR----ITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSM 56
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SLN+ + +TD ++ +SG+T L SL IS ++VT++G+ +L+ L+ LT L+L+ C VT
Sbjct: 57 MSLNLSQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Query: 218 AACLDSLSA 226
+ L A
Sbjct: 117 WPEIRKLQA 125
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT L L+L I D G L L+ LEL + +G++++ LT++ S+NL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
S + ++DG+L ++G+++L SLN+ ++T+ GL L L LT L L ++T
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACKVT 116
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 27/160 (16%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LT L L + +++TD G + L+ +KL L L G +T A + ++ L S+ LNL
Sbjct: 2 LTSLTGLTHLDLFGARITDYGTSCLRYFKKLQSLELCGGSITDAGVKNIKDLTSMMSLNL 61
Query: 236 NR-CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
++ L+D E S +T L SLN+ S+T+V ++GL+
Sbjct: 62 SQNSHLTDGALESISGMTALVSLNI------------------------SNTRVTNAGLQ 97
Query: 295 HLSGLTNLESINLSFTGISDGSLRKL--AGLSSLKSLNLD 332
HL L NL S++L ++ +RKL L +L + LD
Sbjct: 98 HLRPLKNLTSLSLQACKVTWPEIRKLQATALPNLAGVRLD 137
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
+ L +DL G+ +TD G L+ LQSL+ C I+D G+++++ L+++ SL+ +
Sbjct: 6 TGLTHLDLFGARITDYGTSCLRYFKKLQSLE--LCGGSITDAGVKNIKDLTSMMSLNLSQ 63
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ +T +++ +G+ LV L++ + GL +L+ L L SL+++ C +T +++
Sbjct: 64 NSHLTDGALESISGMTALVSLNISNTRVTNAGLQHLRPLKNLTSLSLQACK-VTWPEIRK 122
Query: 176 L--SGLTNLKSLQI 187
L + L NL +++
Sbjct: 123 LQATALPNLAGVRL 136
>gi|149174278|ref|ZP_01852905.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148846823|gb|EDL61159.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1815
Score = 184 bits (466), Expect = 1e-43, Method: Composition-based stats.
Identities = 150/475 (31%), Positives = 225/475 (47%), Gaps = 62/475 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S SL ++ + + +++SG+ LKD L+ L F QI GL HL+ L NL L
Sbjct: 1328 SNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFT-NTQIDGVGLGHLKDLKNLKILGL 1386
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +I+ ++ GL L+ L L C GL LK L L+ L++ ITD +
Sbjct: 1387 -ESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLD-STPITDEGL 1444
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN---------------------- 210
K LSGL L++L++ +KVT GIA L K L +++
Sbjct: 1445 KHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIAEW 1504
Query: 211 -----------------LEGCPVTAACLDSLS---------------ALGSLFYLNLNRC 238
+E P +S+S L +L YL L
Sbjct: 1505 VIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLEST 1564
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+SD G + ++ NLE + LD I DEGL++L GL NL+ L LS T++ GL HL
Sbjct: 1565 SISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKD 1624
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHL-DLF 356
L L +I+++ I++ ++ + L L SLN+ Q+ DTGL + LT L L
Sbjct: 1625 LPRLHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHL 1684
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ITD G +L+ K L SL + G+T G++ + SL+ L+L+ NC +TD LE
Sbjct: 1685 VPKITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLT-NCKITDSGLEH 1743
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
+ L L L + + ++ AGL+HL LK L +L L KVT+ I LQ + LP
Sbjct: 1744 LQDLKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGIADLQ-KALP 1797
Score = 153 bits (386), Expect = 2e-34, Method: Composition-based stats.
Identities = 139/447 (31%), Positives = 215/447 (48%), Gaps = 42/447 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++L + V+D+GL +LKD N SL QI+D G +L + +LT+L + +
Sbjct: 1285 TLPKLNLENTLVSDTGLQYLKDIPLNYISL---IGTQITDKGFGYLSNMPSLTTL-YVGS 1340
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AI+ G++ + L KL T+I G GL +LK L L+ L ++ I+D D++
Sbjct: 1341 TAISNSGVEQLKDMKQLEKLSFTN-TQIDGVGLGHLKDLKNLKILGLE-STSISDVDLQH 1398
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L GL L L +S K+ DSG+AYLK L+ L +L+L+ P+T L LS L L L L
Sbjct: 1399 LHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDEGLKHLSGLKMLQTLEL 1458
Query: 236 NRCQLSDDG----------CEKFSRLTNLESLNLDSCGIGDEGLVNLTGL---------- 275
+ +++ G C+ S + DS + D +
Sbjct: 1459 QKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDS-PMTDREIAEWVIGMGGGIGIGFK 1517
Query: 276 CNLKCLE------------LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
N K E L + L+ L+ L L+ + L T ISD L+ L +
Sbjct: 1518 LNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFLESTSISDTGLQYLRQM 1577
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+L+ + LD ITD GL L L L L L +IT G +L++ L ++++
Sbjct: 1578 QNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGHLKDLPRLHTIDVNRAA 1637
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLK 442
+T++G+K + DL LT LN+S N + D L I GLT L L +IT GL+HL+
Sbjct: 1638 ITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHLVPKITDEGLKHLQ 1697
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRD 469
+K L SLTL S +T +++L +
Sbjct: 1698 GMKQLESLTLSSTGITTTGLEQLTKHE 1724
Score = 107 bits (266), Expect = 2e-20, Method: Composition-based stats.
Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 36/369 (9%)
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL+ + L L GL L LN++ ++D+ ++ L + L + + +++TD
Sbjct: 1265 LDLKGTSVKDDDLKRLAGLKTLPKLNLE-NTLVSDTGLQYLKDIP-LNYISLIGTQITDK 1322
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G YL + LT L + ++ + ++ L + L L+ Q+ G L NL+
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L+S I D L +L GL L L LS+ ++ SGL +L L NL+ ++L T I+D
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPITDE 1442
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGAR--------ITDSGAA 366
L+ L+GL L++L L ++T G+A+L +L + F + +TD A
Sbjct: 1443 GLKHLSGLKMLQTLELQKTKVTPQGIASLQKALPNCKIVSDFETKPIMTSDSPMTDREIA 1502
Query: 367 -------------YLRNFK---------NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ N+K S+ + D ++ + L +L L L
Sbjct: 1503 EWVIGMGGGIGIGFKLNYKIEELPTEPVIFNSVSLKNASFEDHDLQRLAKLKTLKYLFL- 1561
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
++ +++D L+ + + L + + + IT GL HL+ L+NLR L L K+T +
Sbjct: 1562 ESTSISDTGLQYLRQMQNLEEIFLDYTNITDEGLLHLRGLQNLRVLRLSKTKITGEGLGH 1621
Query: 465 LQSRDLPNL 473
L +DLP L
Sbjct: 1622 L--KDLPRL 1628
Score = 92.4 bits (228), Expect = 4e-16, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 1/200 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
+ L+L+G V L L+ L +L LNL +SD G + + L ++L I
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIP-LNYISLIGTQIT 1320
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D+G L+ + +L L + T + +SG+ L + LE ++ + T I L L L +
Sbjct: 1321 DKGFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
LK L L++ I+D L L L L L L +I DSG AYL++ KNL+ L + +T
Sbjct: 1381 LKILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDSTPIT 1440
Query: 386 DAGVKHIKDLSSLTLLNLSQ 405
D G+KH+ L L L L +
Sbjct: 1441 DEGLKHLSGLKMLQTLELQK 1460
Score = 92.0 bits (227), Expect = 6e-16, Method: Composition-based stats.
Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 10/241 (4%)
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L+L + DD ++ + L L LNL++ + D GL L + L + L TQ+
Sbjct: 1264 FLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDI-PLNYISLIGTQITDK 1322
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G +LS + +L ++ + T IS+ + +L + L+ L+ QI GL L L L
Sbjct: 1323 GFGYLSNMPSLTTLYVGSTAISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKNLK 1382
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L I+D +L K L L + + D+G+ ++KDL +L +L+L +TD
Sbjct: 1383 ILGLESTSISDVDLQHLHGLKILIVLGLSNCKIADSGLAYLKDLKNLKVLSLDST-PITD 1441
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQSRDL 470
+ L+ +SGL L +L + +++T G+ L+ L +CK+ ++ + K + + D
Sbjct: 1442 EGLKHLSGLKMLQTLELQKTKVTPQGIASLQK-------ALPNCKIVSDFETKPIMTSDS 1494
Query: 471 P 471
P
Sbjct: 1495 P 1495
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 8/185 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++D++ + +T+SG+ + D L SL+ +F Q+ D GL ++ GL+ L L
Sbjct: 1628 LHTIDVNRAAITNSGMKAMGDLKQLTSLNISFNSQVDDTGLGYIEGLTKLEKLFAHLVPK 1687
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+K G+ L L L GL L L L++ C ITDS ++ L
Sbjct: 1688 ITDEGLKHLQGMKQLESLTLSSTGITTTGLEQLTKHESLSKLDLTNCK-ITDSGLEHLQD 1746
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL+ L++ + V+D+G+ +L L+KL L+L VT+ + L L +C
Sbjct: 1747 LKNLRDLRLDLTPVSDAGLQHLYSLKKLENLDLRETKVTSQGIADLQKA-------LPKC 1799
Query: 239 QLSDD 243
++ D
Sbjct: 1800 KIESD 1804
Score = 49.3 bits (116), Expect = 0.005, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--------------- 394
+ LDL G + D L K L L + ++D G++++KD
Sbjct: 1262 INFLDLKGTSVKDDDLKRLAGLKTLPKLNLENTLVSDTGLQYLKDIPLNYISLIGTQITD 1321
Query: 395 --------LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
+ SLT L + +++ +E + + L L+ +N++I GL HLK LKN
Sbjct: 1322 KGFGYLSNMPSLTTLYVGSTA-ISNSGVEQLKDMKQLEKLSFTNTQIDGVGLGHLKDLKN 1380
Query: 447 LRSLTLESCKVTANDIKRLQ 466
L+ L LES ++ D++ L
Sbjct: 1381 LKILGLESTSISDVDLQHLH 1400
>gi|46446910|ref|YP_008275.1| hypothetical protein pc1276 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400551|emb|CAF24000.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 667
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 234/419 (55%), Gaps = 14/419 (3%)
Query: 66 GSDVTDSGLIHLKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S VT+ I LK SN ++ L+F+ I ++D L L+ NL +L + + +T G+
Sbjct: 243 ASHVTEFEKI-LKHFSNEIERLNFSKNIFLTDAHLLALKNCKNLKALHLQECDKLTDAGL 301
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L+ L L+L C + GL +L LM L+ LN+ C+ ITD+ + L+ L L+
Sbjct: 302 AHLASLMALQHLNLNGCWELTDAGLAHLASLMALQHLNLAKCHKITDAGLAHLTSLVALQ 361
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-L 240
L +SC + +TD+G+ +L+ L LT LNL C +T A L L++L +L +L+L+ C+ L
Sbjct: 362 HLDLSCCRNLTDAGLTHLRPLVALTHLNLAKCHKITDAGLAHLTSLVALQHLDLSYCEKL 421
Query: 241 SDDGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSG 298
+D G + L L+ L+L S + GL +LT L L+ L L+ + +GL HL+
Sbjct: 422 TDAGLAHLTPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLNLNSCYKFTDAGLAHLTS 481
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLF 356
L L+ ++LS ++D L LA L +L+ L+L + T+ GLA LTSL L HLDL
Sbjct: 482 LVALQHLDLSCCRNLTDAGLAHLAPLVALQHLDLSYSHHFTNAGLAHLTSLVALQHLDLS 541
Query: 357 GAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R +TD+G A+L + L+ L++ LTDAG++H+ L +L L+LS LTD L
Sbjct: 542 CCRNLTDAGLAHLTSLVALQHLDLSSCKKLTDAGLEHLTPLVALQHLDLSSCKKLTDAGL 601
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLP 471
++ L L L++S+ ++T AGL HL PL L+ L L C K+T + +S P
Sbjct: 602 AHLAPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLNLNWCDKLTDAGVAHFKSSVAP 660
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 217/396 (54%), Gaps = 15/396 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A ++C L+ L L + + D + +AS +L ++L+G ++TD+GL HL
Sbjct: 271 LTDAHLLALKNCKNLKALHLQECDKLTDAGLAHLASL-MALQHLNLNGCWELTDAGLAHL 329
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ L+ C +I+D GL HL L L L +T G+ L+ L L+
Sbjct: 330 ASLMALQHLNLAKCHKITDAGLAHLTSLVALQHLDLSCCRNLTDAGLTHLRPLVALTHLN 389
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDS 195
L +C +I GL +L L+ L+ L++ +C +TD+ + L+ L L+ L +S S T++
Sbjct: 390 LAKCHKITDAGLAHLTSLVALQHLDLSYCEKLTDAGLAHLTPLVALQHLDLSYSHHFTNA 449
Query: 196 GIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTN 253
G+A+L L L LNL C T A L L++L +L +L+L+ C+ L+D G + L
Sbjct: 450 GLAHLTSLVALQHLNLNSCYKFTDAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLAPLVA 509
Query: 254 LESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 310
L+ L+L S + GL +LT L L+ L+LS + + +GL HL+ L L+ ++LS
Sbjct: 510 LQHLDLSYSHHFTNAGLAHLTSLVALQHLDLSCCRNLTDAGLAHLTSLVALQHLDLSSCK 569
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 368
++D L L L +L+ L+L + +++TD GLA L L L HLDL ++TD+G A+L
Sbjct: 570 KLTDAGLEHLTPLVALQHLDLSSCKKLTDAGLAHLAPLVALQHLDLSSCKKLTDAGLAHL 629
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 403
L+ L + LTDAGV H K SS+ L+L
Sbjct: 630 APLVALQHLNLNWCDKLTDAGVAHFK--SSVAPLHL 663
>gi|46446377|ref|YP_007742.1| hypothetical protein pc0743 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400018|emb|CAF23467.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 765
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 246/476 (51%), Gaps = 39/476 (8%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
EL +S+ LT+ L A ++C L+ L L + D + + ++L +DLSG ++
Sbjct: 262 ELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPL-AALKHLDLSGCEL 320
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
TD GL+HL + LQ LD + C +D GL HL+ L L L+ +T G+
Sbjct: 321 TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKL 380
Query: 130 LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPL--------- 176
L+ L LDL C GL +LK L+ L+ LN+ +C +TD + + PL
Sbjct: 381 LVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLN 440
Query: 177 -------SGLTNLKSLQI-------SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACL 221
+GLT+L SL + TD+G+A+L L L LNL C T A L
Sbjct: 441 GCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGL 500
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKC 280
L++L +L +L+L C+L+DDG L L+ LNL CG + D+GL +L L L+
Sbjct: 501 AHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH 560
Query: 281 LELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQIT 337
L+LS ++ +GL HL L L+ +NLS G ++D L L L++L+ L+L ++T
Sbjct: 561 LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLT 620
Query: 338 DTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 395
GLA L L L HL+L ++TD+G L L+ L++ G LTDAG+ ++ L
Sbjct: 621 GAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPL 680
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 450
+L L+LS NLTD L + L L L++S+ +T GL HL PL L+ L
Sbjct: 681 MALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIALQHL 736
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 212/398 (53%), Gaps = 34/398 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L+ C ++D GL HL L+ L
Sbjct: 269 AHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALK----------------- 311
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
LDL C GLV+L L L+ L++ C TD+ + L L L+ L
Sbjct: 312 --------HLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLN 363
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C K+TD+G+A+LK L L L+L C T A L L L +L +LNL+ C L+D
Sbjct: 364 LSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNLTDA 423
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTN 301
G + L L+ L+L+ C + D GL +LT L L+ L LS + +GL HL+ L
Sbjct: 424 GLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMA 483
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGAR 359
L+ +NLS+ G +D L L L++LK L+L ++TD GLA L L L HL+L + +
Sbjct: 484 LQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGK 543
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD G A+L+ L+ L++ G LT AG+ H+K L +L LNLS LTD L ++
Sbjct: 544 LTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLT 603
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L++S+ ++T AGL HLK L L+ L L C
Sbjct: 604 PLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHC 641
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 147/499 (29%), Positives = 222/499 (44%), Gaps = 81/499 (16%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQY-------PGVNDKWMDVIASQ 55
P D++Q+ F L+ CL + S + + + L Y + ++ +D S+
Sbjct: 140 PLDLTQKEFTYLL--NCLVDASFKVPVEDLPSFIQLADYYQLAEVVKNLEERLLDAYKSE 197
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L + T+ L+ LK+ NF Q HL L N +
Sbjct: 198 EGELF-------NSTEDSLVKLKEV-------LNFAHQY------HLDALKNYLEFTVVS 237
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N A + F ++N L ++E LN +TD+ +
Sbjct: 238 NLLNQAPDLTEFEKILN-------------------HFLNEIEELNFSKNAHLTDAHLLA 278
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L NLK L + +C +TD+G+A+L L L L+L GC +T L L+ L +L +L+
Sbjct: 279 LKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCELTDDGLVHLTPLAALQHLD 338
Query: 235 LNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSS 291
L+ C+ +D G L L+ LNL CG + D GL +L L L+ L+LS + +
Sbjct: 339 LSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDA 398
Query: 292 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA----------------- 333
GL HL L L+ +NLS+ G ++D L L L +L+ L+L+
Sbjct: 399 GLAHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVV 458
Query: 334 ---------RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGG 383
TD GLA LT L L HL+L + TD+G A+L + L+ L++ G
Sbjct: 459 LQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCE 518
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 442
LTD G+ H+K L +L LNLS LTD L + L L L++S ++T AGL HLK
Sbjct: 519 LTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLK 578
Query: 443 PLKNLRSLTLESCKVTAND 461
L L+ L L C +D
Sbjct: 579 FLVALQHLNLSHCGKLTDD 597
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 180/332 (54%), Gaps = 10/332 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++TD+GL HL LQ L+ ++ +D GL HL L L L+
Sbjct: 433 ALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTPLMALQHLNLSYC 492
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
T G+ L L LDL C GL +LK L+ L+ LN+ +C +TD + L
Sbjct: 493 GNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHL 552
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
L L+ L +S C K+T +G+A+LK L L LNL C +T L +L+ L +L +L+
Sbjct: 553 KLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLD 612
Query: 235 LNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSS 291
L+ C +L+ G L L+ LNL CG + D GLVNL+ L L+ L+LS + +
Sbjct: 613 LSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDA 672
Query: 292 GLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTG 349
GL +LS L L+ ++LS G ++D L L L +L+ L+L +TD GLA L+ L
Sbjct: 673 GLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIA 732
Query: 350 LTHLDLFGA-RITD-SGAAYLRNFKNLRSLEI 379
L HLD +TD SG A+L + +L+ L++
Sbjct: 733 LQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDL 764
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 7/259 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G ++TD GL HLK LQ L+ ++C +++D GL HL+ L L L
Sbjct: 507 AALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQHLDLSGC 566
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ L+ L L+L C ++ GLVNL L L L++ C +T + +
Sbjct: 567 DKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAH 626
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L L L+ L +S C K+TD+G+ L L L L+L C +T A L +LS L +L +L
Sbjct: 627 LKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHL 686
Query: 234 NLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ--VG 289
+L+ C L+DDG L L+ L+L CG + D+GL +L+ L L+ L+ S
Sbjct: 687 DLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLTDDGLAHLSPLIALQHLDRSKYNNLTD 746
Query: 290 SSGLRHLSGLTNLESINLS 308
SGL HL+ L +L+ ++LS
Sbjct: 747 GSGLAHLTSLVDLQHLDLS 765
>gi|168698161|ref|ZP_02730438.1| hypothetical protein GobsU_01477 [Gemmata obscuriglobus UQM 2246]
Length = 417
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 204/386 (52%), Gaps = 29/386 (7%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + +SD G++ L GL LT+L+ +T G+K AG L L+L T G
Sbjct: 55 FLYACPLSDAGVKELAGLKALTTLNLGATK-VTDVGVKELAGFKALTTLNLSFTTLTDVG 113
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ L G L +L + + + +TD+ +K L+GL L +L + +KVTD+G+ L L++L+
Sbjct: 114 VKELAGFKALTTLELNYTD-VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELS 172
Query: 208 LLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+L L VT A + L+ L +L L L +++D G ++ + L L +L+L G+ D
Sbjct: 173 VLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTD 232
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G+ L GL L L+L +T V +G++ L+GL L ++NL ++D +++LAGL +L
Sbjct: 233 AGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKAL 292
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+LNL ++TDTGL L LT LDL +TD+G L L L++ G LTD
Sbjct: 293 STLNLGGTKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTD 352
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
AGVK + L++LT+L L + + +T AGL+ L LKN
Sbjct: 353 AGVKELAPLTNLTMLYLGE-------------------------TGVTDAGLKELAGLKN 387
Query: 447 LRSLTLESCKVTANDIKRLQSRDLPN 472
L +L L + KVT +K L + LP
Sbjct: 388 LTALFLFNTKVTDAGVKELTAA-LPK 412
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 189/345 (54%), Gaps = 5/345 (1%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
+V + L C G+ L GL L +LN+ +TD +K L+G L +L +S + +
Sbjct: 51 VVSVFLYACPLSDAGVKELAGLKALTTLNL-GATKVTDVGVKELAGFKALTTLNLSFTTL 109
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD G+ L G + LT L L VT A + L+ L +L L L +++D G ++ + L
Sbjct: 110 TDVGVKELAGFKALTTLELNYTDVTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLK 169
Query: 253 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L L L + + D G+ L GL L LEL T+V +G++ L+GL L +++L +TG
Sbjct: 170 ELSVLGLFAAKAVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTG 229
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
++D +++LAGL +L L+L +TD G+ L L LT L+L GA++TD+G L
Sbjct: 230 VTDAGVKELAGLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGL 289
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L +L + G +TD G+K + +LT L+LS LTD ++ ++GLT L L++S +
Sbjct: 290 KALSTLNLGGTKVTDTGLKELAGFKALTTLDLSFT-TLTDAGVKELAGLTALTLLDLSGT 348
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+T AG++ L PL NL L L VT +K L L NL +
Sbjct: 349 TLTDAGVKELAPLTNLTMLYLGETGVTDAGLKELAG--LKNLTAL 391
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 184/335 (54%), Gaps = 2/335 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L + VTD G+ L L +L+ +F ++D G++ L G LT+L +
Sbjct: 74 ALTTLNLGATKVTDVGVKELAGFKALTTLNLSFT-TLTDVGVKELAGFKALTTLELNYTD 132
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K AGL L L L G+ L L +L L + +TD+ +K L+
Sbjct: 133 -VTDAGVKELAGLKALTTLGLGGTKVTDAGVKELASLKELSVLGLFAAKAVTDAGVKELA 191
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L +L++ +KVTD+G+ L GL+ LT L+L VT A + L+ L +L L+L
Sbjct: 192 GLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTGVTDAGVKELAGLKALSVLDLGN 251
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++D G ++ + L L +LNL + D G+ L GL L L L T+V +GL+ L+
Sbjct: 252 TGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGGTKVTDTGLKELA 311
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
G L +++LSFT ++D +++LAGL++L L+L +TD G+ L LT LT L L
Sbjct: 312 GFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELAPLTNLTMLYLGE 371
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+TD+G L KNL +L + +TDAGVK +
Sbjct: 372 TGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKEL 406
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 162/289 (56%), Gaps = 2/289 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L+ +DVTD+G+ L L +L +++D G++ L L L+ L
Sbjct: 122 ALTTLELNYTDVTDAGVKELAGLKALTTLGLG-GTKVTDAGVKELASLKELSVLGLFAAK 180
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
A+T G+K AGL L L+L G+ L GL L +L++ + +TD+ +K L+
Sbjct: 181 AVTDAGVKELAGLKALTTLELGLTKVTDAGVKELAGLKALTTLDLHYTG-VTDAGVKELA 239
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL L L + + VTD+G+ L GL+ LT LNL G VT A + L+ L +L LNL
Sbjct: 240 GLKALSVLDLGNTGVTDAGVKELAGLKALTTLNLGGAKVTDAGVKELAGLKALSTLNLGG 299
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+++D G ++ + L +L+L + D G+ L GL L L+LS T + +G++ L+
Sbjct: 300 TKVTDTGLKELAGFKALTTLDLSFTTLTDAGVKELAGLTALTLLDLSGTTLTDAGVKELA 359
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
LTNL + L TG++D L++LAGL +L +L L ++TD G+ LT+
Sbjct: 360 PLTNLTMLYLGETGVTDAGLKELAGLKNLTALFLFNTKVTDAGVKELTA 408
>gi|406836026|ref|ZP_11095620.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 586
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 4/401 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++DLS + +TDS L L NL +++ + +I GL L GL NL +L ++
Sbjct: 148 NLTAIDLSETAITDSALKPLSVLENLSTINLS-TTKIDGSGLADLSGLKNLKTLVLS-HS 205
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
IT + + A L NL L+L GL +L L L LN+ + + D+ + L+
Sbjct: 206 PITNEALAGVAALRNLTTLELWNTPISADGLKSLGTLTDLTKLNLGFT-SLDDTGLAELA 264
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNLK+L + + VTD+G++ L ++ LT LNL +T A + +++ L L+L
Sbjct: 265 TLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLNDTQITDAGMVAIARHKDLNELHLEG 324
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+L+D G L L+ L + + D G+ L G +LK L L T+V GL+ L
Sbjct: 325 TRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLL 384
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
GL +L+S+ L TGI+D ++LA L++L L+LDA +TD G+ L L+ L +L L
Sbjct: 385 GLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDATAVTDEGVRELGGLSNLEYLSLIS 444
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+I+D G + L FK L+ L + ++D G+K + DLS LT L LS +TD ++ +
Sbjct: 445 TKISDDGVSGLGAFKKLKMLFLHNNQISDEGLKGLNDLSQLTTLYLSM-TQVTDVGMKEL 503
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L L + +++IT AGL+ L L L L + + VT
Sbjct: 504 KNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVIRNVAVT 544
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 153/480 (31%), Positives = 232/480 (48%), Gaps = 51/480 (10%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------------- 90
ND+++ +I+ G L S+DLS + +TD GL L+ + L SL+ +
Sbjct: 64 NDRYVHLISPLGR-LESLDLSNTQITDLGLKELRKLNALTSLNLRYTAISDVGLSELSEM 122
Query: 91 ---------CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
QISD GL+ L L NLT++ AIT +K + L NL ++L
Sbjct: 123 SKLDTLNLSATQISDAGLDKLLALRNLTAIDLSE-TAITDSALKPLSVLENLSTINLS-T 180
Query: 142 TRIHG-GLVNLKGLMKLESLNIK-----------------------WCNCITDSDMKPLS 177
T+I G GL +L GL L++L + W I+ +K L
Sbjct: 181 TKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTPISADGLKSLG 240
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LT+L L + + + D+G+A L L L LNL VT L SLS + +L LNLN
Sbjct: 241 TLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQIKNLTNLNLND 300
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
Q++D G +R +L L+L+ + D GL L L L L++ T V +G+ L+
Sbjct: 301 TQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDAGVEELA 360
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
G +L+ + L T +SD L+ L GL L+SL L ITD G L SLT LT LDL
Sbjct: 361 GFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLTGLDLDA 420
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD G L NL L + ++D GV + L +L L N ++D+ L+ +
Sbjct: 421 TAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFL-HNNQISDEGLKGL 479
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ L+ L +L +S +++T G++ LK LK+L+ L L ++T +K L N++ R
Sbjct: 480 NDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELNVLVIR 539
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 149/472 (31%), Positives = 234/472 (49%), Gaps = 48/472 (10%)
Query: 6 ISQQIFNELVYSRCLTEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
IS ++L+ R LT + L A D AL+ L + + +L +++
Sbjct: 135 ISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVLE-----------------NLSTIN 177
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + SGL L NL++L + I++ L + L NLT+L N I+A G
Sbjct: 178 LSTTKIDGSGLADLSGLKNLKTLVLSHS-PITNEALAGVAALRNLTTLELW-NTPISADG 235
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ L +L KL+L + GL L L L++LN+ +TD+ + LS + NL
Sbjct: 236 LKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTG-VTDTGLSSLSQIKNLT 294
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L ++ +++TD+G+ + + L L+LEG +T L +L LG L L + + ++D
Sbjct: 295 NLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTAVTDA 354
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---------------------- 281
G E+ + +L+ L L S + DEGL +L GL +L+ L
Sbjct: 355 GVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLASLTTLT 414
Query: 282 --ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+L T V G+R L GL+NLE ++L T ISD + L LK L L QI+D
Sbjct: 415 GLDLDATAVTDEGVRELGGLSNLEYLSLISTKISDDGVSGLGAFKKLKMLFLHNNQISDE 474
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L L+ LT L L ++TD G L+N K+L+ L +C +TDAG+K + LS L
Sbjct: 475 GLKGLNDLSQLTTLYLSMTQVTDVGMKELKNLKHLKDLVLCDTQITDAGLKELTGLSELN 534
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSL 450
+L + +N +TD LE ++ L L + R + AGL K + N+R L
Sbjct: 535 VLVI-RNVAVTDACLEHLTSFKNLTHLCIDVHRFSEAGLNAFKTSMPNVRVL 585
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 199/360 (55%), Gaps = 2/360 (0%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
+ +SF N + + + L L LDL GL L+ L L SLN+++
Sbjct: 52 IVGISFAGNARFNDRYVHLISPLGRLESLDLSNTQITDLGLKELRKLNALTSLNLRYT-A 110
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D + LS ++ L +L +S ++++D+G+ L L+ LT ++L +T + L LS L
Sbjct: 111 ISDVGLSELSEMSKLDTLNLSATQISDAGLDKLLALRNLTAIDLSETAITDSALKPLSVL 170
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L +NL+ ++ G S L NL++L L I +E L + L NL LEL +T
Sbjct: 171 ENLSTINLSTTKIDGSGLADLSGLKNLKTLVLSHSPITNEALAGVAALRNLTTLELWNTP 230
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + GL+ L LT+L +NL FT + D L +LA L++LK+LNL +TDTGL++L+ +
Sbjct: 231 ISADGLKSLGTLTDLTKLNLGFTSLDDTGLAELATLTNLKALNLMQTGVTDTGLSSLSQI 290
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT+L+L +ITD+G + K+L L + G LTD G++ +K L L +L + +
Sbjct: 291 KNLTNLNLNDTQITDAGMVAIARHKDLNELHLEGTRLTDVGLRALKTLGELDVLQIGKTA 350
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD +E ++G L L + +++++ GL+ L L++L+SL L +T K+L S
Sbjct: 351 -VTDAGVEELAGFKHLKILRLGSTKVSDEGLKSLLGLEHLQSLGLGGTGITDVGAKQLAS 409
>gi|46446667|ref|YP_008032.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400308|emb|CAF23757.1| hypothetical protein pc1033 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 662
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/424 (36%), Positives = 225/424 (53%), Gaps = 36/424 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D++ +I + + ++L + ++ + LK C NL+ L F C ++D GL HL
Sbjct: 212 LSDEFGRIINHFSNEIKILNLPNKILNNACFLALKSCENLKVLHFKECRHLTDAGLAHLT 271
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNI 162
L+ L L L +C R+ + GL +L L L+ LN+
Sbjct: 272 PLTALQHLG-------------------------LGQCWRLTNAGLAHLTPLTALQYLNL 306
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAAC 220
+TD+ + L+ LT L+ L +S C +TD+G+A+L L L L+L GC +T A
Sbjct: 307 SEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAG 366
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNL 278
L L+ L L +LNL+RC +L+D G + LT L+ L+L C + D GL +LT L L
Sbjct: 367 LAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGL 426
Query: 279 KCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLD-ARQ 335
+ L+LS Q + +GL HL+ LT L+ +NL + +D L L LS L+ LNL +
Sbjct: 427 QHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNK 486
Query: 336 ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLE-ICGGGLTDAGVKHIK 393
+TD GLA LT LT L HLDL +TD G A+L +L+ L I LTDAG+ H+K
Sbjct: 487 LTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLK 546
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTL 452
L+ L LNLS NLTD L ++ LT L L ++ R +T AGL HL L L+ L L
Sbjct: 547 LLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDL 606
Query: 453 ESCK 456
C+
Sbjct: 607 RYCQ 610
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 219/396 (55%), Gaps = 13/396 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ L C ++++ GL HL L+ L L+ +T G+
Sbjct: 262 LTDAGLAHLTPLTALQHLGLGQCWRLTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLT 321
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L L C + GL +L LM L+ L++ C +TD+ + L+ LT L+ L +
Sbjct: 322 PLTALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNL 381
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C+K+TD+G+A+L L L L+L GC +T A L L+ L L +L+L+ CQ L+D G
Sbjct: 382 SRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAG 441
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
+ LT L+ LNL +C D GL +LT L L+ L LS ++ GL HL+ LT L
Sbjct: 442 LAHLTPLTGLQHLNLCNCRKFTDNGLAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTAL 501
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR- 359
+ ++LS ++D L L L+SL+ L L ++TD GL L LTGL HL+L +
Sbjct: 502 QHLDLSSCYNLTDVGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKN 561
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+G A+L L+ L + LTDAG+ H+ L++L L+L NLTD L ++
Sbjct: 562 LTDAGLAHLTPLTALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLT 621
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
LTGL L++S R+T AGL K L SL LE
Sbjct: 622 PLTGLRHLDLSQCWRLTKAGLARFKTLA--ASLNLE 655
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 203/371 (54%), Gaps = 12/371 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL HL + LQ L+ + ++D GL HL L+ L L +T G+
Sbjct: 287 LTNAGLAHLTPLTALQYLNLSEYKNLTDAGLAHLTPLTALQHLGLSGCQNLTDAGLAHLT 346
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L L+ LN+ CN +TD+ + L+ LT L+ L +
Sbjct: 347 PLMGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDL 406
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+A+L L L L+L GC +T A L L+ L L +LNL C + +D+G
Sbjct: 407 SGCQNLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNG 466
Query: 245 CEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
+ L+ L+ LNL C + D GL +LT L L+ L+LS + GL HL+ LT+L
Sbjct: 467 LAHLTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTDVGLAHLTPLTSL 526
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR- 359
+ + L S ++D L L L+ L+ LNL + + +TD GLA LT LT L +L L R
Sbjct: 527 QHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLTALQYLYLNWCRK 586
Query: 360 ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+TD+G A+L + L+ L++ C LTDAG+ H+ L+ L L+LSQ LT L
Sbjct: 587 LTDAGLAHLTSLTALQHLDLRYCQN-LTDAGLAHLTPLTGLRHLDLSQCWRLTKAGLARF 645
Query: 418 SGLTGLVSLNV 428
L ++L +
Sbjct: 646 KTLAASLNLEI 656
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 201/376 (53%), Gaps = 35/376 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L +Y + D + + ++L + LSG ++TD+GL HL LQ LD +
Sbjct: 300 ALQYLNLSEYKNLTDAGLAHLTPL-TALQHLGLSGCQNLTDAGLAHLTPLMGLQHLDLSG 358
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL HL L+ L L+ R N +T G+ L L LDL C + GL
Sbjct: 359 CQNLTDAGLAHLTPLTGLQHLNLSRCNKLTDAGLAHLTPLTGLQHLDLSGCQNLTDAGLA 418
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTL 208
+L L L+ L++ C +TD+ + L+ LT L+ L + +C K TD+G+A+
Sbjct: 419 HLTPLTGLQHLDLSGCQNLTDAGLAHLTPLTGLQHLNLCNCRKFTDNGLAH--------- 469
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGD 266
L+ L L +LNL+RC +L+D G + LT L+ L+L SC + D
Sbjct: 470 ---------------LTPLSVLQHLNLSRCNKLTDVGLAHLTPLTALQHLDLSSCYNLTD 514
Query: 267 EGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLS 324
GL +LT L +L+ L L S ++ +GL HL LT L+ +NLS ++D L L L+
Sbjct: 515 VGLAHLTPLTSLQHLGLISCDKLTDAGLVHLKLLTGLQHLNLSNCKNLTDAGLAHLTPLT 574
Query: 325 SLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG- 381
+L+ L L+ R++TD GLA LTSLT L HLDL + +TD+G A+L LR L++
Sbjct: 575 ALQYLYLNWCRKLTDAGLAHLTSLTALQHLDLRYCQNLTDAGLAHLTPLTGLRHLDLSQC 634
Query: 382 GGLTDAGVKHIKDLSS 397
LT AG+ K L++
Sbjct: 635 WRLTKAGLARFKTLAA 650
>gi|149174587|ref|ZP_01853213.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
gi|148846697|gb|EDL61034.1| hypothetical protein PM8797T_09949 [Planctomyces maris DSM 8797]
Length = 540
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 217/410 (52%), Gaps = 11/410 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TDS L ++ NLQ L+ N ISD GL HLRGLS L L + G
Sbjct: 140 LRGTTITDSDLKYVGALKNLQKLNLN-NTAISDAGLAHLRGLSELRVLELE-GTQLDGTG 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L +L +LDL+ N G ES N + I D+ +K + L +LK
Sbjct: 198 LVYLKHLNHLEELDLDNYNN------NFVGWNDGESEN-EPRPQIRDAGLKHIGKLKHLK 250
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + ++++D G+A+L+ L+KL L ++ + L L +L L L+ ++SD
Sbjct: 251 KLSLFGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDA 310
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G ++L L+SL+L + I D GL++L L +LK L+LSDT V GL HLS L NLE
Sbjct: 311 GLVHLAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLE 370
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S+ L T +S L L LS L+ L++ ++ D GL A+ L L L LF ITD
Sbjct: 371 SLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQ 430
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G +L NL+ L++ ++DAG+ H+ L+ L +L+L + +TD L + GL L
Sbjct: 431 GLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDL-EGTRITDAGLIHLQGLNEL 489
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L + + ++ AGL+HLK L L+ L E ++T I L+ + LP+L
Sbjct: 490 EQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGINDLR-QSLPDL 538
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 182/355 (51%), Gaps = 43/355 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN--------------------------- 89
S L ++L G+ + +GL++LK ++L+ LD +
Sbjct: 181 SELRVLELEGTQLDGTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGL 240
Query: 90 --------------FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
F +ISD GL HL+ L L SL F R N I+ +G+ GL+NL
Sbjct: 241 KHIGKLKHLKKLSLFGAEISDVGLAHLQDLKKLESLEFAREN-ISDKGVAHLKGLLNLTS 299
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L+ GLV+L L KL+SL++ I+D+ + L LT+LKSL +S + V+D
Sbjct: 300 LRLDGSRVSDAGLVHLAKLQKLQSLDLG-NTSISDTGLIHLQELTSLKSLDLSDTAVSDD 358
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ +L LQ L L L ++ L SL L L YL++ +++D G + L +L+
Sbjct: 359 GLIHLSRLQNLESLYLRSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLD 418
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
SL L + I D+GLV+L+GL NLK L+L +T + +GL HLS L L+ ++L T I+D
Sbjct: 419 SLGLFATPITDQGLVHLSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDA 478
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
L L GL+ L+ L LD ++D GL L LT L L +IT++G LR
Sbjct: 479 GLIHLQGLNELEQLELDKTAVSDAGLKHLKGLTKLQFLQYEETQITEAGINDLRQ 533
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 197/410 (48%), Gaps = 43/410 (10%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G E G L F ++ + A + L NL + L T GG ++ GL L
Sbjct: 77 GEEKFLGFMTAVELDFEFGE-LSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNL 135
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
E L+++ ITDSD+K + L NL+ L ++ + ++D+G+A+L+GL +L +L LEG +
Sbjct: 136 ELLSLR-GTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLD 194
Query: 218 AACLDSLSALGSLFYLNLN------------------RCQLSDDGCEKFSRLTNLESLNL 259
L L L L L+L+ R Q+ D G + +L +L+ L+L
Sbjct: 195 GTGLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSL 254
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
I D GL +L L L+ LE + + G+ HL GL NL S+ L + +SD L
Sbjct: 255 FGAEISDVGLAHLQDLKKLESLEFARENISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVH 314
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA L L+SL+L I+DTGL L LT L LDL ++D G +L +NL SL +
Sbjct: 315 LAKLQKLQSLDLGNTSISDTGLIHLQELTSLKSLDLSDTAVSDDGLIHLSRLQNLESLYL 374
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLTDKTLEL 416
L+ G+ +K+LS L L++ + +TD+ L
Sbjct: 375 RSTNLSGVGLSSLKNLSMLQYLDMGYSKMNDQGLIAVAELGSLDSLGLFATPITDQGLVH 434
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+SGLT L L++ + I+ AGL HL L L+ L LE ++T + LQ
Sbjct: 435 LSGLTNLKKLDLQETSISDAGLVHLSHLAGLKVLDLEGTRITDAGLIHLQ 484
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 43/266 (16%)
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G EKF L+ + + +E + ++ L NLK + L T + G +H++GL NLE
Sbjct: 77 GEEKFLGFMTAVELDFEFGELSEEDFIAISQLKNLKSIHLLITTIEEGGRKHITGLQNLE 136
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
++L T I+D L+ + L +L+ LNL+ I+D GLA L L+ L L+L G ++ +
Sbjct: 137 LLSLRGTTITDSDLKYVGALKNLQKLNLNNTAISDAGLAHLRGLSELRVLELEGTQLDGT 196
Query: 364 GAAYLRNFKNLRSLEI------------------------------------------CG 381
G YL++ +L L++ G
Sbjct: 197 GLVYLKHLNHLEELDLDNYNNNFVGWNDGESENEPRPQIRDAGLKHIGKLKHLKKLSLFG 256
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
++D G+ H++DL L L ++ N++DK + + GL L SL + SR++ AGL HL
Sbjct: 257 AEISDVGLAHLQDLKKLESLEFARE-NISDKGVAHLKGLLNLTSLRLDGSRVSDAGLVHL 315
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQS 467
L+ L+SL L + ++ + LQ
Sbjct: 316 AKLQKLQSLDLGNTSISDTGLIHLQE 341
>gi|46447588|ref|YP_008953.1| hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401229|emb|CAF24678.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 704
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 234/468 (50%), Gaps = 62/468 (13%)
Query: 51 VIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
+I + +++ S +D +TD+ L+ L++C NL+ L N C I+D GL HL L+ L
Sbjct: 188 IIIPFSKEIEALNFSNNDYLTDAHLLTLRNCENLKVLHLNACQAITDDGLAHLTPLTGLQ 247
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------------------------- 144
L R +T G+ L L L+L C +
Sbjct: 248 HLDIRVCEYLTDDGLAYLTSLTGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYL 307
Query: 145 -HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKG 202
GL +LK L L+ L++ +C +T+ + L+ LT L+ L +S C ++ D+G+ YL
Sbjct: 308 TATGLAHLKPLKALQHLDLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTP 367
Query: 203 LQKLTLLNLEG------------CPVTA-ACLD-------------SLSALGSLFYLNLN 236
L L L+L G P+TA CLD L L +L +LNL
Sbjct: 368 LTGLQHLDLSGYHKLTDAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLR 427
Query: 237 RCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGL 293
C+ L+DDG + LT L+ L+L C + D GL +LT L L+ L+LS + + GL
Sbjct: 428 NCRNLTDDGLAHLAPLTALQHLDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGL 487
Query: 294 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 351
HL L L+ +NL + ++D L LA L++L+ L+L D +TD GLA LT LT L
Sbjct: 488 AHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQ 547
Query: 352 HLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
HLDL + +T +G A+L L+ L++ L DAG+ H+K L++L L LS NL
Sbjct: 548 HLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENL 607
Query: 410 TDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
TD L + LT L L + + + +T AGL HL+ L +L+ L L C+
Sbjct: 608 TDDGLAHLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQ 655
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 147/432 (34%), Positives = 219/432 (50%), Gaps = 40/432 (9%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L ++LSG +TD+GL HL + LQ LD C ++ GL HL+ L L L
Sbjct: 269 TGLQHLNLSGCYHLTDTGLAHLTPLTGLQHLDLRICEYLTATGLAHLKPLKALQHLDLSY 328
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A L L LDL C ++ GLV L L L+ L++ + +TD+ +
Sbjct: 329 CKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGLVYLTPLTGLQHLDLSGYHKLTDAGLA 388
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L+ L LNL C +T L L+ L +L +
Sbjct: 389 HLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPLTALQH 448
Query: 233 LNLNRC-QLSDDGCEKFSRLTNLESLNLDSC--------------------------GIG 265
L+L+ C QL+D G + LT L+ L+L C +
Sbjct: 449 LDLSYCWQLTDAGLAHLTPLTGLQRLDLSYCENLTDVGLAHLIPLKALQHLNLRNCRNLT 508
Query: 266 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 323
D+GLV+L L L+ L+LSD + +GL HL+ LT L+ ++L + ++ L LA L
Sbjct: 509 DDGLVHLAPLTALQHLDLSDCNNLTDAGLAHLTPLTALQHLDLKYCINLTGAGLAHLAFL 568
Query: 324 SSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLE-IC 380
+ L+ L+L + + D GL L LT L +L L + +TD G A+LR+ L+ L I
Sbjct: 569 TGLQYLDLSWCKNLIDAGLVHLKLLTALQYLGLSYCENLTDDGLAHLRSLTALQHLALIH 628
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLR 439
LTDAG+ H++ L+SL L+L NLT L + LT L L ++ + +T GL
Sbjct: 629 YKNLTDAGLVHLRSLTSLQHLDLRYCQNLTGDGLAHLRTLTALQYLALTQYKNLTDDGLA 688
Query: 440 HLKPLK---NLR 448
K L NLR
Sbjct: 689 RFKTLASSTNLR 700
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 198/398 (49%), Gaps = 36/398 (9%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVT 70
+L Y + LT V L ALQ L L + D + V + + L +DLSG +T
Sbjct: 325 DLSYCKNLTNVGLSHLAPLTALQHLDLSYCWQLADAGL-VYLTPLTGLQHLDLSGYHKLT 383
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD ++C ++D GL HL L L L+ R +T G+ A L
Sbjct: 384 DAGLAHLTPLTALQCLDLSYCENLTDVGLAHLMPLKALQHLNLRNCRNLTDDGLAHLAPL 443
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L LDL C + +TD+ + L+ LT L+ L +S C
Sbjct: 444 TALQHLDLSYCWQ------------------------LTDAGLAHLTPLTGLQRLDLSYC 479
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+TD G+A+L L+ L LNL C +T L L+ L +L +L+L+ C L+D G
Sbjct: 480 ENLTDVGLAHLIPLKALQHLNLRNCRNLTDDGLVHLAPLTALQHLDLSDCNNLTDAGLAH 539
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 305
+ LT L+ L+L C + GL +L L L+ L+LS + + +GL HL LT L+ +
Sbjct: 540 LTPLTALQHLDLKYCINLTGAGLAHLAFLTGLQYLDLSWCKNLIDAGLVHLKLLTALQYL 599
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITD 362
LS+ ++D L L L++L+ L L + +TD GL L SLT L HLDL + +T
Sbjct: 600 GLSYCENLTDDGLAHLRSLTALQHLALIHYKNLTDAGLVHLRSLTSLQHLDLRYCQNLTG 659
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 399
G A+LR L+ L + LTD G+ K L+S T
Sbjct: 660 DGLAHLRTLTALQYLALTQYKNLTDDGLARFKTLASST 697
>gi|46447096|ref|YP_008461.1| hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400737|emb|CAF24186.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 870
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 208/394 (52%), Gaps = 25/394 (6%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + L+ LD + C ++D GL HL L L LS + +T G+
Sbjct: 471 NLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHL 530
Query: 128 AGLINLVKLDLE----RCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
L L LDL C + GL +L L L+ L++ W +TD+ + L+ LT L
Sbjct: 531 TSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTAL 590
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-- 239
K L +S C +TD G+AYL L L L+L+G +T L+ L+ L +L +L+LN C+
Sbjct: 591 KHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRI 650
Query: 240 LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--- 295
G + L NLE L+L C + L+ L+ L NL+ L LS G GL H
Sbjct: 651 YHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIFLSSLVNLQHLNLS----GCFGLYHDGL 706
Query: 296 --LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD---ARQITDTGLAALTSLTG 349
L+ L NL+ ++LS ++D L L L L +LD ++ITDTGLA LTSL G
Sbjct: 707 EDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVG 766
Query: 350 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
L +LDL + +TD G AYL +F L+ L + G +TDAG+ H+ L +L LNLS+
Sbjct: 767 LEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECV 826
Query: 408 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRH 440
NLTD L + L L L + + IT GL H
Sbjct: 827 NLTDTGLAHLVSLVNLQDLELRECKSITDTGLAH 860
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 232/442 (52%), Gaps = 19/442 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ+L L + + D + ++S ++L +DLSG D+TD+GL HL +LQ LD +
Sbjct: 385 ALQNLDLSECYLLKDTGLAHLSSL-TALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSK 443
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++ GL HL L L L +T G+ L L LDL C + GLV
Sbjct: 444 CENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLV 503
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-----SCSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 504 HLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLT 563
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L L+L +T A L L++L +L +L+L+ C+ L+D+G + L L+ L+L
Sbjct: 564 ALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 623
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLS-FTGISDGSLRK 319
I DEGL +L L L+ L L+D + GL HL+ L NLE ++LS +S L
Sbjct: 624 DITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGCYSLSSFKLIF 683
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK--NLR 375
L+ L +L+ LNL + GL LT L L +LDL +TD G AYL + L+
Sbjct: 684 LSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAYLTSLVGLGLQ 743
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRI 433
L++ G +TD G+ H+ L L L+LS NLTDK L ++ GL LN+ +I
Sbjct: 744 HLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCENLTDKGLAYLTSFAGLKYLNLKGCKKI 803
Query: 434 TSAGLRHLKPLKNLRSLTLESC 455
T AGL HL L L+ L L C
Sbjct: 804 TDAGLAHLTSLVTLQRLNLSEC 825
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 219/403 (54%), Gaps = 17/403 (4%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ+LD + C + D GL HL L+ L L + +T G+ L
Sbjct: 374 DTGLAHLTSLTALQNLDLSECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPL 433
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL +C + G GL +L L+ L L + C +TD+ + L+ LT LK L +S
Sbjct: 434 VSLQHLDLSKCENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSE 493
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL----NRCQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L++L +L +L+L CQ L+D
Sbjct: 494 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTD 553
Query: 243 DGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 300
DG S LT L+ L+L + D GL +LT L LK L+LS + + GL +L+ L
Sbjct: 554 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLV 613
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD-TGLAALTSLTGLTHLDLFG- 357
L+ ++L + I+D L LA LS+L+ L+L D R+I GLA LT+L L HLDL G
Sbjct: 614 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRIYHGYGLAHLTTLVNLEHLDLSGC 673
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
++ +L + NL+ L + G GL G++ + L +L L+LS NLTDK L
Sbjct: 674 YSLSSFKLIFLSSLVNLQHLNLSGCFGLYHDGLEDLTPLMNLQYLDLSSCINLTDKGLAY 733
Query: 417 ISGLT--GLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
++ L GL L++S + IT GL HL L L L L C+
Sbjct: 734 LTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSWCE 776
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 19/316 (6%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLE 212
+E LN+ + T++ L N K+L++ C K+ D+G+A+L L L L+L
Sbjct: 336 IEELNLSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQNLDLS 392
Query: 213 GCPVTAAC-LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGL 269
C + L LS+L +L YL+L+ C L+D G + L +L+ L+L C + +GL
Sbjct: 393 ECYLLKDTGLAHLSSLTALQYLDLSGCDDLTDAGLAHLTPLVSLQHLDLSKCENLTGDGL 452
Query: 270 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 327
+LT L L+ L LSD + + +GL HL+ LT L+ ++LS ++D L L+ L +L+
Sbjct: 453 AHLTPLVALRHLGLSDCRNLTDAGLAHLTPLTALKHLDLSECKNLTDDGLVHLSSLVALQ 512
Query: 328 SLNLD-ARQITDTGLAALTSLTGLTHLDL---FGA--RITDSGAAYLRNFKNLRSLEICG 381
L+L +TD GLA LTSLT L HLDL FG +TD G A+L + L+ L++
Sbjct: 513 YLSLKLCENLTDAGLAHLTSLTALEHLDLGLDFGYCQNLTDDGLAHLSSLTALKHLDLSW 572
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
LTDAG+ H+ L++L L+LS NLTD+ L ++ L L L++ S IT GL H
Sbjct: 573 RENLTDAGLAHLTSLTALKHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEH 632
Query: 441 LKPLKNLRSLTLESCK 456
L L LR L+L C+
Sbjct: 633 LAHLSALRHLSLNDCR 648
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
LQ L L + DK + + S G L +DLSG ++TD+GL HL L+ LD ++
Sbjct: 715 LQYLDLSSCINLTDKGLAYLTSLVGLGLQHLDLSGCKEITDTGLAHLTSLVGLEYLDLSW 774
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
C ++D GL +L + L L+ + IT G+ L+ L +L+L C + GL
Sbjct: 775 CENLTDKGLAYLTSFAGLKYLNLKGCKKITDAGLAHLTSLVTLQRLNLSECVNLTDTGLA 834
Query: 150 NLKGLMKLESLNIKWCNCITDS 171
+L L+ L+ L ++ C ITD+
Sbjct: 835 HLVSLVNLQDLELRECKSITDT 856
>gi|301098037|ref|XP_002898112.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262105473|gb|EEY63525.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 156/530 (29%), Positives = 234/530 (44%), Gaps = 77/530 (14%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+LP +++ + L L + +A L + L + V D W D I
Sbjct: 141 VLPPELALSVLQWLKQHYVLDKPQFQALTPLLLLEWNLADHQDVEDSWFDDIPE------ 194
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNN 117
K +++S+D + CI + G E H+ L L SF+
Sbjct: 195 -----------------KTLESVKSIDVSGCIHLQQLGSEWGRHVNRLPELLVASFQGCT 237
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ + ++ L L+L C + V +L+ L L+SL + C +TD +K L
Sbjct: 238 GLSKETIEMLKLSTKLTTLNLSGCANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVKRL 297
Query: 177 SGLTNLKSLQI-SCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LT L+ L++ C K+TD ++ KL L++ C ++ + + + SL L
Sbjct: 298 FKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEVLV 357
Query: 235 LNRCQ-LSDDGCEKFSRLTNLESLNLDSCG---------------------IGDEGLVNL 272
+ CQ +SD G + LTNL+ + CG + L
Sbjct: 358 IRGCQDISDVGMASLAELTNLKYFDARHCGKIHSIPTEWTQLEVLLLGYTAFAESDAAVL 417
Query: 273 TGLCNLKCLELSDTQVGSSG------LRHLSGLT-------------------NLESINL 307
L L+ LEL ++ G L+HL L NL+++N+
Sbjct: 418 QYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAETALTDSRLLEICNNAINLKALNV 477
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
S T ISD L L L+ L LD IT+ LA L+ L L LDLFGA ITD+G +
Sbjct: 478 SNTEISDSGTTGLTKLKELRILGLDTSGITNRALANLSFLPQLERLDLFGANITDNGLMH 537
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L L+ L ICGG + D GV I L+SLT LNLSQN N+ K+L + LT L LN
Sbjct: 538 LIPLHKLQELAICGGNIGDRGVGLISKLTSLTSLNLSQNRNIRTKSLFYLRSLTSLRCLN 597
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+SN+ I++ LRHL PLK L+SL++ C ++ I L+ LP L R
Sbjct: 598 LSNTGISALSLRHLSPLKELQSLSVYGCSLSQGHIDVLRE-ILPELKCLR 646
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 17/296 (5%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C+ ++ I LK KLT LNL GC V C+ SL L L L L C +L+D G +
Sbjct: 236 CTGLSKETIEMLKLSTKLTTLNLSGCANVDDKCVKSLRQLEHLKSLQLVGCRRLTDKGVK 295
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ +LT LE L L C + D+ L+ L++S+ ++ ++H+ + +LE
Sbjct: 296 RLFKLTKLEKLRLGRCRKLTDDAFGGFVDSFPKLRELDVSNCRLSERAMQHIGQVKSLEV 355
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ + ISD + LA L++LK DAR + T T L L L +S
Sbjct: 356 LVIRGCQDISDVGMASLAELTNLKY--FDARHCGKIH-SIPTEWTQLEVLLLGYTAFAES 412
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
AA L+ L+ LE+ + G + I L L L +++ + LE+ + L
Sbjct: 413 DAAVLQYLTKLQELELRKCRIMKRGFQFISRLKHLERLEVAETALTDSRLLEICNNAINL 472
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
+LNVSN+ I+ +G L LK LR L L++ +T +R L NL SF P+
Sbjct: 473 KALNVSNTEISDSGTTGLTKLKELRILGLDTSGIT--------NRALANL-SFLPQ 519
>gi|46447590|ref|YP_008955.1| hypothetical protein pc1956 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401231|emb|CAF24680.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 659
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 214/402 (53%), Gaps = 11/402 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 234 ENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGL 293
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GL +L L L+ LN+ +C+ +TD+ + LS LT L+
Sbjct: 294 AHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQ 353
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S C +TD+G+ +LK L L LNL C +T A L L L +L +L+L+ C L
Sbjct: 354 HLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNL 413
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSG 298
+D G + LT L+ L+L C + D GLV+L L L+ L+L +V GL HL+
Sbjct: 414 TDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADDGLAHLTP 473
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL- 355
LT L++++LS ++D L L L++L+ L L +TD GL L L L HLDL
Sbjct: 474 LTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLS 533
Query: 356 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ +TD G +L L+ L++ LT G+ H++ L++L L+L+Q NLTD L
Sbjct: 534 YCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGL 593
Query: 415 ELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ LT L L++S T GL HL L L+ L L C
Sbjct: 594 VHLEPLTALQHLDLSYCGNFTDVGLVHLTSLMALQHLNLRGC 635
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 208/382 (54%), Gaps = 11/382 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL+HL L+ L+ NFC ++++ GL HLR L+ L L+ +T G+
Sbjct: 262 NLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHL 321
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C ++ GLV L L L+ L++ C +TD+ + L L L+ L
Sbjct: 322 TPLTALQHLNLNFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLN 381
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD+G+ +LK L L L+L C +T A L L+ L +L YL+L+ C L+D
Sbjct: 382 LSCCENLTDAGLVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDA 441
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN 301
G LT L+ L+L C + D+GL +LT L L+ L LS + + +GL HL LT
Sbjct: 442 GLVHLKFLTALQHLDLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTA 501
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGA 358
L+ + LS ++D L L L +L+ L+L +TD GL LT L L HLDL +
Sbjct: 502 LQYLRLSQCWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCE 561
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+T G A+LR+ L+ L + LTDAG+ H++ L++L L+LS N TD L +
Sbjct: 562 NLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYCGNFTDVGLVHL 621
Query: 418 SGLTGLVSLNVSN-SRITSAGL 438
+ L L LN+ R+T GL
Sbjct: 622 TSLMALQHLNLRGCDRVTDVGL 643
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 201/359 (55%), Gaps = 11/359 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ +L+F N +T + A NL +L L+ C + GLV+L L+ L+ LN+ +C+
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 167 CITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSL 224
+T++ + L LT L+ L + +C +TD+G+A+L L L LNL C +T L L
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 282
S L +L +L+L+ C+ L+D G L L+ LNL C + D GLV+L L L+ L+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLD 406
Query: 283 LSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 339
LSD + +GL HL+ LT L+ ++LS+ ++D L L L++L+ L+L ++ D
Sbjct: 407 LSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466
Query: 340 GLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
GLA LT LT L L L R +TD+G +L+ L+ L + LTDAG+ H++ L +
Sbjct: 467 GLAHLTPLTALQALSLSQCRNLTDAGLGHLKLLTALQYLRLSQCWNLTDAGLIHLRPLVA 526
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L+LS NLTD L ++ L L L+++ +T GL HL+ L L+ L+L C
Sbjct: 527 LQHLDLSYCGNLTDVGLVHLTPLMALQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQC 585
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 178/346 (51%), Gaps = 36/346 (10%)
Query: 46 DKWMD---VIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
DK D V S ++L +DLS ++TD+GL+HLK LQ L+ + C ++D GL H
Sbjct: 336 DKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAGLVH 395
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESL 160
L+ L L L N +T G+ L L LDL C + GLV+LK L L+ L
Sbjct: 396 LKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTALQHL 455
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+++ C+ + D + L+ LT L++L +S C +TD+G+ +LK
Sbjct: 456 DLRGCDKVADDGLAHLTPLTALQALSLSQCRNLTDAGLGHLK------------------ 497
Query: 220 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN 277
L +L YL L++C L+D G L L+ L+L CG + D GLV+LT L
Sbjct: 498 ------LLTALQYLRLSQCWNLTDAGLIHLRPLVALQHLDLSYCGNLTDVGLVHLTPLMA 551
Query: 278 LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-R 334
L+ L+L+ + + GL HL LT L+ ++L+ ++D L L L++L+ L+L
Sbjct: 552 LQHLDLNYCENLTGDGLAHLRSLTTLQHLSLNQCWNLTDAGLVHLEPLTALQHLDLSYCG 611
Query: 335 QITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI 379
TD GL LTSL L HL+L G R+TD G A + F L+I
Sbjct: 612 NFTDVGLVHLTSLMALQHLNLRGCDRVTDVGLALFKIFATSLHLKI 657
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 7/216 (3%)
Query: 253 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SF 309
NL+ L+L C + D GLV+L L LK L L+ ++ ++GL HL LT L+ +NL +
Sbjct: 251 NLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAHLRPLTALQHLNLGNC 310
Query: 310 TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAY 367
++D L L L++L+ LNL+ ++TDTGL L+ LT L HLDL +TD+G +
Sbjct: 311 RNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVH 370
Query: 368 LRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L+ L+ L + C LTDAG+ H+K L +L L+LS NLTD L ++ LT L L
Sbjct: 371 LKPLVALQHLNLSCCENLTDAGLVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYL 430
Query: 427 NVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
++S + +T AGL HLK L L+ L L C A+D
Sbjct: 431 DLSYCNNLTDAGLVHLKFLTALQHLDLRGCDKVADD 466
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 147/274 (53%), Gaps = 30/274 (10%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L L+L+ C +T A L L+ L +L +LNLN C +L++ G
Sbjct: 236 AHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCDKLTNTGLAH 295
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
LT L+ LNL +C NLT +GL HL+ LT L+ +NL
Sbjct: 296 LRPLTALQHLNLGNCR-------NLT----------------DAGLAHLTPLTALQHLNL 332
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSG 364
+F ++D L +L+ L++L+ L+L D +TD GL L L L HL+L +TD+G
Sbjct: 333 NFCDKLTDTGLVRLSPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCENLTDAG 392
Query: 365 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+L+ L+ L++ LTDAG+ H+ L++L L+LS NLTD L + LT L
Sbjct: 393 LVHLKLLVALQHLDLSDCNNLTDAGLAHLTPLTALQYLDLSYCNNLTDAGLVHLKFLTAL 452
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L++ ++ GL HL PL L++L+L C+
Sbjct: 453 QHLDLRGCDKVADDGLAHLTPLTALQALSLSQCR 486
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGA 358
+E++N S ++D L L +LK L+L + R +TD GL L L L HL+L F
Sbjct: 227 IEALNFSENAHLTDAHLLALKNCKNLKELHLQECRNLTDAGLVHLAPLVALKHLNLNFCD 286
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++T++G A+LR L+ L + LTDAG+ H+ L++L LNL+ LTD L +
Sbjct: 287 KLTNTGLAHLRPLTALQHLNLGNCRNLTDAGLAHLTPLTALQHLNLNFCDKLTDTGLVRL 346
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
S LT L L++S+ +T AGL HLKPL L+ L L C+
Sbjct: 347 SPLTALQHLDLSDCENLTDAGLVHLKPLVALQHLNLSCCE 386
>gi|283780172|ref|YP_003370927.1| hypothetical protein Psta_2397 [Pirellula staleyi DSM 6068]
gi|283438625|gb|ADB17067.1| leucine-rich repeat cysteine-containing subtype [Pirellula staleyi
DSM 6068]
Length = 443
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 182/328 (55%), Gaps = 5/328 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL +L L+ L ++D G+EHL L L + +R + +T++G ++ A
Sbjct: 107 VTDAGLANLDGHPTLRILVLELS-SVTDAGMEHLTKLPALEDIQLKRCD-LTSKGYESLA 164
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ L ++ + L +K + +LE L+++ CN +T++ + PL+G+T LKSL+I
Sbjct: 165 KIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQVTEAGLAPLAGMTKLKSLRIY 224
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEK 247
+TD+ + Y+K + L L+LE V + + L L L L ++DD +
Sbjct: 225 GPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGLSKLKELKLYGASNVTDDALAQ 284
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESIN 306
+ L +LE L L S +G+V+L G+ LK L+LS+T + ++GL L+ LTNLE IN
Sbjct: 285 IAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAALAPLTNLEEIN 344
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L +T + D L LAG++ LK LNLD Q+TD GL L L+ L L + R+TD+G A
Sbjct: 345 LWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIGSTRVTDTGLA 404
Query: 367 YLRNFKNLRSLEICG-GGLTDAGVKHIK 393
L KNL+ L I ++D GV ++
Sbjct: 405 ELEGLKNLKHLVITFCNDISDDGVAKLQ 432
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 2/292 (0%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D ++K L GL +L L+ + VTD+G+A L G L +L LE VT A ++ L+ L
Sbjct: 84 SDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTDAGMEHLTKLP 143
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQ 287
+L + L RC L+ G E +++ L + D+ L + + L+ L+L D Q
Sbjct: 144 ALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQLELLDLQDCNQ 203
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V +GL L+G+T L+S+ + I+D + + +L SL+L+ + G+ + L
Sbjct: 204 VTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDGMKVIGGL 263
Query: 348 TGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L L L+GA +TD A + K+L LE+ T G+ H+ +S L LL+LS+
Sbjct: 264 SKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSET 323
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N+ + L ++ LT L +N+ + + AGL L + L+ L L+ C+VT
Sbjct: 324 ANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVT 375
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 190/395 (48%), Gaps = 32/395 (8%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ ++ SD L+HL+GL +LT L +T G+ G L L LE +
Sbjct: 76 EVKLGVEGSDENLKHLKGLPSLTRLEANVR-GVTDAGLANLDGHPTLRILVLELSSVTDA 134
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G+ +L L LE + +K C+ +T + L+ + L+ ++ + D +A +K + +L
Sbjct: 135 GMEHLTKLPALEDIQLKRCD-LTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193
Query: 207 TLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LL+L+ C VT A L L+ + L L + ++D NL SL+L+ +G
Sbjct: 194 ELLDLQDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVG 253
Query: 266 DEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
+G+ + GL LK L+L + V L ++GL +LE + L T + + LAG+S
Sbjct: 254 VDGMKVIGGLSKLKELKLYGASNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMS 313
Query: 325 SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
LK L+L + I + GLAAL LT L ++L+ + D+G A L L+ L +
Sbjct: 314 KLKLLDLSETANIDNAGLAALAPLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQ 373
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+TDAG+ H+K LS+L L ++ ++R+T GL L+
Sbjct: 374 VTDAGLVHLKGLSNLEFL-------------------------HIGSTRVTDTGLAELEG 408
Query: 444 LKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSFR 477
LKNL+ L + C ++D + +LQ+ LP L
Sbjct: 409 LKNLKHLVITFCNDISDDGVAKLQAA-LPGLTKIE 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 2/217 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S+ + G +TD+ + ++KDC NL SL DG ++ + GLS L L
Sbjct: 216 TKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAVGVDG-MKVIGGLSKLKELKLYGA 274
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +T + AGL +L L+L T G+V+L G+ KL+ L++ I ++ + L
Sbjct: 275 SNVTDDALAQIAGLKDLEILELRSTTTTSKGMVHLAGMSKLKLLDLSETANIDNAGLAAL 334
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL+ + + + V D+G+A L G+ KL LNL+ C VT A L L L +L +L++
Sbjct: 335 APLTNLEEINLWYTFVDDAGLAPLAGMTKLKRLNLDKCQVTDAGLVHLKGLSNLEFLHIG 394
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNL 272
+++D G + L NL+ L + C I D+G+ L
Sbjct: 395 STRVTDTGLAELEGLKNLKHLVITFCNDISDDGVAKL 431
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)
Query: 283 LSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+++ ++G G L+HL GL +L + + G++D L L G +L+ L L+ +TD
Sbjct: 74 ITEVKLGVEGSDENLKHLKGLPSLTRLEANVRGVTDAGLANLDGHPTLRILVLELSSVTD 133
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+ LT L L + L +T G L K LR + D + IKD+S L
Sbjct: 134 AGMEHLTKLPALEDIQLKRCDLTSKGYESLAKIKTLRRIRAPQTNFNDDCLAAIKDMSQL 193
Query: 399 TLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LL+L Q+CN +T+ L ++G+T L SL + IT + ++K KNL SL+LE V
Sbjct: 194 ELLDL-QDCNQVTEAGLAPLAGMTKLKSLRIYGPTITDTVMGYIKDCKNLASLSLEQSAV 252
Query: 458 TANDIK 463
+ +K
Sbjct: 253 GVDGMK 258
>gi|46446906|ref|YP_008271.1| hypothetical protein pc1272 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400547|emb|CAF23996.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 618
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 204/397 (51%), Gaps = 35/397 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C ++D GL +L L+ L
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQ---------------- 279
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+L C + GL +L L+ L+ LN+ C +TD+ + L+ LT L L
Sbjct: 280 ---------HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYL 330
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C +TD+G+A+L L LT LNL C +T A L L+ L +L YLNL+ C L+D
Sbjct: 331 NLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTD 390
Query: 243 DGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 300
G + L L LNL C D GL +LT L L+ L+L + + +GL HL+ L
Sbjct: 391 AGLAHLTPLVTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLV 450
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA 358
L +NLS+ +D L LA L +L+ L+L+ Q+TD GLA L L LTHLDL
Sbjct: 451 ALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSC 510
Query: 359 -RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+TD+G +L L+ L++ LTDAG+ H+ L +LT LNLS + TD L
Sbjct: 511 NHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTH 570
Query: 417 ISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
++ L L LN++ T AGL H K L +L L
Sbjct: 571 LTPLLALQDLNLNYCENFTDAGLAHFKSLATFPNLNL 607
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 171/334 (51%), Gaps = 34/334 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+AYL L L LNL GC
Sbjct: 227 EIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGC 286
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ--------------------------LSDDGCEKF 248
A L L+ L +L +LNL+ C+ ++D G
Sbjct: 287 KFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNITDAGLAHL 346
Query: 249 SRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 306
+ LT L LNL SC + D GL +LT L L L LS + +GL HL+ L L +N
Sbjct: 347 TPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLVTLTHLN 406
Query: 307 LSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDS 363
LS+ +D L L L +L+ L+L R ITD GLA LT L LTHL+L + TD+
Sbjct: 407 LSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSWCYNFTDA 466
Query: 364 GAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G A+L L+ L++ G LTDAG+ H+ L +LT L+LS +LTD L ++ L
Sbjct: 467 GLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVA 526
Query: 423 LVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
L L++S R +T AGL HL PL L L L SC
Sbjct: 527 LQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSC 560
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 189/388 (48%), Gaps = 38/388 (9%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLL 60
P +I + F++ + LT+ L A ++C L+ L L + + D + + + ++L
Sbjct: 224 FPNEIEELNFSK---NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYL-TPLTTLQ 279
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD------------------------ 96
++L+G ++GL HL LQ L+ + C ++D
Sbjct: 280 HLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLTLLTALTYLNLSHCRNIT 339
Query: 97 -GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
GL HL L+ LT L+ N +T G+ L L L+L C + GL +L L
Sbjct: 340 DAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPL 399
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+ WC TD+ + L+ L L+ L + C +TD+G+A+L L LT LNL
Sbjct: 400 VTLTHLNLSWCYNFTDAGLAHLTPLVALQHLDLGHCRNITDAGLAHLTPLVALTHLNLSW 459
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLV 270
C T A L L+ L +L +L+LN C QL+D G + L L L+L SC + D GL
Sbjct: 460 CYNFTDAGLAHLAPLVALQHLDLNGCWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLP 519
Query: 271 NLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 328
+LT L L+ L+LS + + +GL HL+ L L +NLS +D L L L +L+
Sbjct: 520 HLTPLVALQHLDLSYCRNLTDAGLAHLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQD 579
Query: 329 LNLDA-RQITDTGLAALTSLTGLTHLDL 355
LNL+ TD GLA SL +L+L
Sbjct: 580 LNLNYCENFTDAGLAHFKSLATFPNLNL 607
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 100/183 (54%), Gaps = 15/183 (8%)
Query: 288 VGSSGLRHLSGLTNLESI---------NLSFT---GISDGSLRKLAGLSSLKSLNL-DAR 334
V SS L S LT E I L+F+ ++D L L +LK L+L + R
Sbjct: 203 VVSSLLNQTSHLTGFEKILNHFPNEIEELNFSKNASLTDAHLLALKNCKNLKVLHLQECR 262
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 393
+TD GLA LT LT L HL+L G + ++G A+L L+ L + LTDAG+ H+
Sbjct: 263 NLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAHLTPLVALQHLNLSHCRNLTDAGLPHLT 322
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
L++LT LNLS N+TD L ++ LT L LN+S+ + +T AGL HL PL L L L
Sbjct: 323 LLTALTYLNLSHCRNITDAGLAHLTPLTALTYLNLSSCNNLTDAGLAHLTPLTALTYLNL 382
Query: 453 ESC 455
SC
Sbjct: 383 SSC 385
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 28/187 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L LG + D + + + +L ++LS + TD+GL HL LQ LD N
Sbjct: 426 ALQHLDLGHCRNITDAGLAHL-TPLVALTHLNLSWCYNFTDAGLAHLAPLVALQHLDLNG 484
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI------ 144
C Q++D GL HL L LT L N +T G+ L+ L LDL C +
Sbjct: 485 CWQLTDAGLAHLAPLVALTHLDLSSCNHLTDAGLPHLTPLVALQHLDLSYCRNLTDAGLA 544
Query: 145 --------------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
GL +L L+ L+ LN+ +C TD+ + L +
Sbjct: 545 HLAPLVALTHLNLSSCNHFTDAGLTHLTPLLALQDLNLNYCENFTDAGLAHFKSLATFPN 604
Query: 185 LQISCSK 191
L + C +
Sbjct: 605 LNLICYQ 611
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
LTDA + +K+ +L +L+L + NLTD L ++ LT L LN++ + +AGL H
Sbjct: 236 NASLTDAHLLALKNCKNLKVLHLQECRNLTDAGLAYLTPLTTLQHLNLAGCKFANAGLAH 295
Query: 441 LKPLKNLRSLTLESCK 456
L PL L+ L L C+
Sbjct: 296 LTPLVALQHLNLSHCR 311
>gi|168701673|ref|ZP_02733950.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 367
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 179/331 (54%), Gaps = 30/331 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LSF R +T +G+K AGL NL L+L + +TD
Sbjct: 56 LSFTR---VTDKGLKELAGLKNLTHLNL-------------------------FSTWVTD 87
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +K L+GL L +L ++ + VTD+G+ L L LT L L G VT A L L+AL L
Sbjct: 88 AGVKELAGLKGLTTLDLNSTSVTDAGMKELAALNNLTTLRLSGKGVTDAGLKELAALKKL 147
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L+ +++D G ++ + L L ++ L++ + D GL L L L L+LS T+V
Sbjct: 148 ANLDLSHTKVTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTD 207
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+GL+ L+ L L + L T ++D L++LAGL +L L+L +TD GL L +L L
Sbjct: 208 AGLKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNL 266
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL LFG ++T G L K L +L + +TDAGVK + L LT L+LS +T
Sbjct: 267 THLYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSY-TEMT 325
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
D ++ ++GL GL +L + +++T AG++ L
Sbjct: 326 DAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 171/305 (56%), Gaps = 3/305 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD +K L+GL NL L + + VTD+G+ L GL+ LT L+L VT A + L+AL
Sbjct: 61 VTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELAAL 120
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L L L+ ++D G ++ + L L +L+L + D GL L L L + L++T+
Sbjct: 121 NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE 180
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V +GL+ L+ L L ++LS T ++D L++LA L L L L ++TD GL L L
Sbjct: 181 VTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL 240
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L L G +TD+G L KNL L + G +T G+K + L LT L L+ N
Sbjct: 241 N-LTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN-NT 298
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD ++ +SGL GL +L++S + +T AG++ L LK L +L L KVT +K L S
Sbjct: 299 KVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNS 358
Query: 468 RDLPN 472
LP
Sbjct: 359 A-LPK 362
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 166/290 (57%), Gaps = 3/290 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S ++VTD G+ L GL+ LT LNL VT A + L+ L L L+LN ++D G
Sbjct: 54 VYLSFTRVTDKGLKELAGLKNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAG 113
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
++ + L NL +L L G+ D GL L L L L+LS T+V +GL+ L+ L L +
Sbjct: 114 MKELAALNNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTT 173
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
I L+ T ++D L++LA L L L+L ++TD GL L +L GLT L L G ++TD+G
Sbjct: 174 IRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAG 233
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L NL L + G +TDAG+K + L +LT L L +T L+ +SGL GL
Sbjct: 234 LKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLF-GTKVTGVGLKELSGLKGLT 291
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+L ++N+++T AG++ L LK L +L L ++T +K L + L NL
Sbjct: 292 TLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNL 341
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 168/300 (56%), Gaps = 3/300 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GL+ L GL NLT L+ + +T G+K AGL L LDL + G+ L
Sbjct: 60 RVTDKGLKELAGLKNLTHLNL-FSTWVTDAGVKELAGLKGLTTLDLNSTSVTDAGMKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L + +TD+ +K L+ L L +L +S +KVTD+G+ L L+ LT + L
Sbjct: 119 ALNNLTTLRLSG-KGVTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLN 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
VT A L L+AL L L+L++ +++D G ++ + L L L L + D GL L
Sbjct: 178 NTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKEL 237
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
GL NL L L+ T V +GL+ L+ L NL + L T ++ L++L+GL L +L L+
Sbjct: 238 AGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLN 296
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++TD G+ L+ L GLT LDL +TD+G L K L +LE+ G +TDAGVK +
Sbjct: 297 NTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 172/328 (52%), Gaps = 29/328 (8%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ V DK + +A +L ++L + VTD+G+ L L +LD N ++D G++
Sbjct: 58 FTRVTDKGLKELAGL-KNLTHLNLFSTWVTDAGVKELAGLKGLTTLDLN-STSVTDAGMK 115
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
L L+NLT+L +T G+K A L L LDL
Sbjct: 116 ELAALNNLTTLRL-SGKGVTDAGLKELAALKKLANLDLSHTK------------------ 156
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+TD+ +K L+ L L +++++ ++VTD+G+ L L+KL L+L VT A
Sbjct: 157 -------VTDAGLKELAALKGLTTIRLNNTEVTDAGLKELAALKKLADLDLSQTKVTDAG 209
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L L+AL L L L +++D G ++ + L NL L+L + D GL L L NL
Sbjct: 210 LKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTH 268
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L T+V GL+ LSGL L ++ L+ T ++D +++L+GL L +L+L ++TD G
Sbjct: 269 LYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAG 328
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYL 368
+ AL L GLT+L+L+G ++TD+G L
Sbjct: 329 VKALAGLKGLTNLELYGTKVTDAGVKEL 356
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 146/288 (50%), Gaps = 28/288 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DL+ + VTD+ G++ L L+NLT+L
Sbjct: 99 LTTLDLNSTSVTDA-------------------------GMKELAALNNLTTLRL-SGKG 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L ++ + +TD+ +K L+
Sbjct: 133 VTDAGLKELAALKKLANLDLSHTKVTDAGLKELAALKGLTTIRLNNTE-VTDAGLKELAA 191
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L L +S +KVTD+G+ L L+ LT L L G VT A L L+ L +L L+L
Sbjct: 192 LKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELAGL-NLTDLHLAGT 250
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++D G ++ + L NL L L + GL L+GL L L L++T+V +G++ LSG
Sbjct: 251 PVTDAGLKELAALKNLTHLYLFGTKVTGVGLKELSGLKGLTTLYLNNTKVTDAGVKELSG 310
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
L L +++LS+T ++D ++ LAGL L +L L ++TD G+ L S
Sbjct: 311 LKGLTTLDLSYTEMTDAGVKALAGLKGLTNLELYGTKVTDAGVKELNS 358
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 133/254 (52%), Gaps = 5/254 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +A+ ++L ++ LSG VTD+GL L L +LD + +++D GL+ L
Sbjct: 109 VTDAGMKELAAL-NNLTTLRLSGKGVTDAGLKELAALKKLANLDLSHT-KVTDAGLKELA 166
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L LT++ N +T G+K A L L LDL + GL L L L L +
Sbjct: 167 ALKGLTTIRL-NNTEVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGL- 224
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+TD+ +K L+GL NL L ++ + VTD+G+ L L+ LT L L G VT L
Sbjct: 225 LGTKVTDAGLKELAGL-NLTDLHLAGTPVTDAGLKELAALKNLTHLYLFGTKVTGVGLKE 283
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
LS L L L LN +++D G ++ S L L +L+L + D G+ L GL L LEL
Sbjct: 284 LSGLKGLTTLYLNNTKVTDAGVKELSGLKGLTTLDLSYTEMTDAGVKALAGLKGLTNLEL 343
Query: 284 SDTQVGSSGLRHLS 297
T+V +G++ L+
Sbjct: 344 YGTKVTDAGVKELN 357
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFR--DCALQDL-------CLGQY-PGVNDKWMDVIAS 54
+++ EL + L ++ L + D L++L CLG V D + +A
Sbjct: 180 EVTDAGLKELAALKKLADLDLSQTKVTDAGLKELAALKGLTCLGLLGTKVTDAGLKELA- 238
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G +L + L+G+ VTD+GL L NL L + F +++ GL+ L GL LT+L +
Sbjct: 239 -GLNLTDLHLAGTPVTDAGLKELAALKNLTHL-YLFGTKVTGVGLKELSGLKGLTTL-YL 295
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T G+K +GL L LDL +TD+ +K
Sbjct: 296 NNTKVTDAGVKELSGLKGLTTLDLSYTE-------------------------MTDAGVK 330
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLN 210
L+GL L +L++ +KVTD+G+ L L K +LN
Sbjct: 331 ALAGLKGLTNLELYGTKVTDAGVKELNSALPKCKILN 367
>gi|149176715|ref|ZP_01855326.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844356|gb|EDL58708.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 1266
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 228/490 (46%), Gaps = 77/490 (15%)
Query: 40 QYPG--VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG 97
Q PG + DK + + + SL ++DLS S +TD+GL+ LK L++L+ +++D
Sbjct: 483 QLPGTAITDKGLATL-NDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLG-STRVTDA 540
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL HL+ L L SL N ++T G+ L L LDL GL + L+ L
Sbjct: 541 GLTHLKALPKLESLKLY-NTSVTGTGLSELVTLPKLKTLDLSLTPLTETGLQTVSKLIHL 599
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+SL++ I + +K L LT L +L++ +++ D+ +A + L KL LNL +T
Sbjct: 600 QSLSLTKTK-INSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLTKLRSLNLRKTEIT 658
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+ L L L L+L+ ++S+ G + L L L L I D GL L+ + N
Sbjct: 659 DTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDIDDAGLKTLSSIFN 718
Query: 278 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDG--------------------- 315
LK L+L T+V +G+ + L +NL TG+++
Sbjct: 719 LKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASPPLD 778
Query: 316 --------SLRKLAGLSSLKSLNLDARQIT----------------DTGLAALTSLTGLT 351
L+K G + + L +A Q+ D L+ L L L
Sbjct: 779 SGIQSILAKLKKSGGFYTRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLNGLKTLY 838
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------------------- 390
LD+ GA +TD+G +L++ LR L++ GG T+ G+K
Sbjct: 839 ELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIENAGITND 898
Query: 391 ---HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
+K+++ L + L QN +T+ L+ +SGLT L LN+S +RI S G+ HL L+NL
Sbjct: 899 QLIQLKEMTQLKIFILPQN-QITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLASLENL 957
Query: 448 RSLTLESCKV 457
RSL LE +V
Sbjct: 958 RSLALEHTRV 967
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 218/462 (47%), Gaps = 48/462 (10%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P ++DK + + S L S+ L+ + V+D GL L + L SL I+D L H
Sbjct: 272 PHIDDKSLACLKGL-SGLKSLTLNQTSVSDQGLQILNELKGLTSLTI-MQSPITDAALPH 329
Query: 102 LRGLSNLTSLSFRR-----------------------NNAITAQGMKAFAGLINLVKLDL 138
L GLS LTSL+ R + +T+ GM + K++
Sbjct: 330 LTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIET 389
Query: 139 ERCT--------------------RIHGGLVNLKGLMKLESL-NIKWC-NCITDSDMKPL 176
+ T I V G + E +I++ N I D+ +K L
Sbjct: 390 GKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHL 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LKS+ + +TD +L GL +L L L G +T L +L+ L SL L+L+
Sbjct: 450 KHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLS 509
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R ++D G + L++LNL S + D GL +L L L+ L+L +T V +GL L
Sbjct: 510 RSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSEL 569
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L++++LS T +++ L+ ++ L L+SL+L +I G+ L LT LT L L
Sbjct: 570 VTLPKLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLD 629
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I D+ A + LRSL + +TD G+ H+++L L +L+L + +++ L+
Sbjct: 630 YTQIDDTALASIAKLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDE-TRVSNAGLKS 688
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L L L + + I AGL+ L + NL+SL L KVT
Sbjct: 689 LQSLQQLYRLGLRETDIDDAGLKTLSSIFNLKSLDLYGTKVT 730
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 146/540 (27%), Positives = 230/540 (42%), Gaps = 127/540 (23%)
Query: 28 FRDCALQDLC---LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
F++C L+D L Q+P + ++ + +TD L+HLKD + L+
Sbjct: 111 FQNCPLEDDAFQHLKQFPALTHLFVRHVP---------------LTDQCLVHLKDLTQLE 155
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L + F QISD GLEHL L L SL+ + I+ G+ + L L +L++
Sbjct: 156 VL-WLFATQISDSGLEHLNNLKELNSLNLYQTK-ISNAGLTHLSELKKLKQLEVNETKVT 213
Query: 145 HGGLVNLK-----------------------------GLMKLESLNIKWC--------NC 167
G+ L+ G ++ + L+
Sbjct: 214 SAGVAELQEAIPECKILFDRPVLPAHLKVARQVKSLGGFVRYQDLDQHRLLSSISLSRPH 273
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L GL+ LKSL ++ + V+D G+ L L+ LT L + P+T A L L+ L
Sbjct: 274 IDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGL 333
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL---CNLKC---- 280
L LNL R ++D G E +L L+ LNL S G+ G+ + C ++
Sbjct: 334 SRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSAGMARVHAALPKCKIETGKAT 393
Query: 281 ----------------------------------------LELSDTQVGSSGLRHLSGLT 300
+ Q+ + ++HL +
Sbjct: 394 APGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVP 453
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L+S++ T I+D R L+GLS L++L L ITD GLA L L L +LDL + I
Sbjct: 454 RLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGI 513
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQN----------- 406
TD+G L+ F L++L + +TDAG+ H+K L SL L N S
Sbjct: 514 TDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLP 573
Query: 407 ---------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT+ L+ +S L L SL+++ ++I SAG++HL PL L +L L+ ++
Sbjct: 574 KLKTLDLSLTPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQI 633
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 165/334 (49%), Gaps = 27/334 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ G+ + D+ + HLK L+S+ F I+D HL GLS L +L AIT
Sbjct: 433 SIRFFGNQIVDAQVKHLKHVPRLKSVSF-ISTSITDDCTRHLSGLSELETLQLP-GTAIT 490
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G+ L +L LDL R GLV+LK +L++LN+
Sbjct: 491 DKGLATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNL------------------ 532
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
++VTD+G+ +LK L KL L L VT L L L L L+L+ L
Sbjct: 533 -------GSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSLTPL 585
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
++ G + S+L +L+SL+L I G+ +L L L L+L TQ+ + L ++ LT
Sbjct: 586 TETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIAKLT 645
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L S+NL T I+D + L L LK L+LD ++++ GL +L SL L L L I
Sbjct: 646 KLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETDI 705
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
D+G L + NL+SL++ G +TD G+ + D
Sbjct: 706 DDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYFHD 739
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 221/456 (48%), Gaps = 53/456 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q V+D+ + ++ ++ L S+ + S +TD+ L HL S L SL+
Sbjct: 288 LKSLTLNQT-SVSDQGLQIL-NELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTA 345
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---------- 142
++D G+EH+ L L L+ + +T+ GM + K++ + T
Sbjct: 346 -VTDAGMEHIIKLKQLKKLN-LISTGVTSAGMARVHAALPKCKIETGKATAPGDSTQAQA 403
Query: 143 -------------------------------RIHGGLV------NLKGLMKLESLNIKWC 165
R G + +LK + +L+S++
Sbjct: 404 AIAALKAQGAHIQNQRVFKNGKLTSEYFTSIRFFGNQIVDAQVKHLKHVPRLKSVSF-IS 462
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
ITD + LSGL+ L++LQ+ + +TD G+A L L+ L L+L +T A L SL
Sbjct: 463 TSITDDCTRHLSGLSELETLQLPGTAITDKGLATLNDLKSLENLDLSRSGITDAGLVSLK 522
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L LNL +++D G L LESL L + + GL L L LK L+LS
Sbjct: 523 KFPQLKTLNLGSTRVTDAGLTHLKALPKLESLKLYNTSVTGTGLSELVTLPKLKTLDLSL 582
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
T + +GL+ +S L +L+S++L+ T I+ ++ L L+ L +L LD QI DT LA++
Sbjct: 583 TPLTETGLQTVSKLIHLQSLSLTKTKINSAGVKHLVPLTELTTLKLDYTQIDDTALASIA 642
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT L L+L ITD+G +L N K L+ L + +++AG+K ++ L L L L +
Sbjct: 643 KLTKLRSLNLRKTEITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRE 702
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
++ D L+ +S + L SL++ +++T G+ +
Sbjct: 703 -TDIDDAGLKTLSSIFNLKSLDLYGTKVTDTGMAYF 737
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 218/463 (47%), Gaps = 57/463 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L+ + + +G+ HL + L +L ++ QI D L + L+ L SL+ R+
Sbjct: 599 LQSLSLTKTKINSAGVKHLVPLTELTTLKLDYT-QIDDTALASIAKLTKLRSLNLRKTE- 656
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT GM L L L L+ + GL +L+ L +L L ++ + I D+ +K LS
Sbjct: 657 ITDTGMVHLENLKPLKVLSLDETRVSNAGLKSLQSLQQLYRLGLRETD-IDDAGLKTLSS 715
Query: 179 LTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAA------------------ 219
+ NLKSL + +KVTD+G+AY L K T LNL G VT A
Sbjct: 716 IFNLKSLDLYGTKVTDTGMAYFHDKLIKPTDLNLHGTGVTEAGVAMLKQQCPNCRIQASP 775
Query: 220 CLDS--LSALGSL-----FYLNLNRCQLSDDGC--------------------EKFSRLT 252
LDS S L L FY R +L ++ E+ S L
Sbjct: 776 PLDSGIQSILAKLKKSGGFY---TRRRLPENAEQLVVRFYPLPGREKKLSPLDERLSLLN 832
Query: 253 NLESL-NLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L++L LD G + D GL +L + L+ L+L+ GL+ L+ L LE + +
Sbjct: 833 GLKTLYELDVAGADLTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQIEN 892
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GI++ L +L ++ LK L QIT+ GL L+ LT L L+L RI G +L
Sbjct: 893 AGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMVHLA 952
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ +NLRSL + + D G++ + L L L L +TD L+ +T L L+++
Sbjct: 953 SLENLRSLALEHTRVADQGLEDLLRLPRLNTLILD-GTTITDGGTPLLRKMTSLGMLSLN 1011
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
++ IT GL+ L+ L+ L L L KV+ + +K Q R P
Sbjct: 1012 STYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQ-RSQPK 1053
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 207/468 (44%), Gaps = 105/468 (22%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D++G+D+TD+GL HLK L+ L N GG
Sbjct: 836 TLYELDVAGADLTDAGLKHLKHVPELRVLKLN-------GG------------------- 869
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
T +G+K L L L +E + L+ LK + +L+ + I N IT+ +K LS
Sbjct: 870 NFTEEGLKQLTQLKKLEVLQIENAGITNDQLIQLKEMTQLK-IFILPQNQITEHGLKHLS 928
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GLTNLK L +S +++ G+ +L L+ L L LE V L+ L L L L L+
Sbjct: 929 GLTNLKVLNLSQNRIYSDGMVHLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDG 988
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR--- 294
++D G ++T+L L+L+S I D GL +L L L L+L+DT+V G++
Sbjct: 989 TTITDGGTPLLRKMTSLGMLSLNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQ 1048
Query: 295 --------------------------------------------------HLSGLTNLES 304
HL G+ + +
Sbjct: 1049 RSQPKCNIEYAAPLASSLQYVIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHN 1108
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ D L++++ + LK L++ + +T L + +LT L+ LDL G+RI D G
Sbjct: 1109 -RAEKAKVFDSCLKRISEMKDLKRLSMHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQG 1167
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L+ NL+ L++ +TDAGV + L L L
Sbjct: 1168 IKDLKGLVNLQKLKLEHTQITDAGVAQLAQLQ-----------------------LNRLY 1204
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
SL++ +S+ T+A L LK ++ LR L+L+ +++A D+++ + + LP+
Sbjct: 1205 SLDLDHSKTTAACLESLKDMQRLRFLSLQHLELSAADLEKFK-QALPS 1251
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 172/381 (45%), Gaps = 60/381 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL L L++ + +TD+ +K L + L+ L+++ T+ G+ L L+KL +L
Sbjct: 831 LNGLKTLYELDVAGAD-LTDAGLKHLKHVPELRVLKLNGGNFTEEGLKQLTQLKKLEVLQ 889
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+E +T L L + L L + Q+++ G + S LTNL+ LNL I +G+V
Sbjct: 890 IENAGITNDQLIQLKEMTQLKIFILPQNQITEHGLKHLSGLTNLKVLNLSQNRIYSDGMV 949
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+L L NL+ L L T+V GL L L L ++ L T I+DG L ++SL L+
Sbjct: 950 HLASLENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTTITDGGTPLLRKMTSLGMLS 1009
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR-------------SL 377
L++ ITD GL L +L GL LDL ++++ G ++NF+ + SL
Sbjct: 1010 LNSTYITDRGLKDLETLRGLYRLDLNDTKVSEDG---VKNFQRSQPKCNIEYAAPLASSL 1066
Query: 378 EICGGGLTDAG------------------------------------------VKHIKDL 395
+ L +AG +K I ++
Sbjct: 1067 QYVIQELKEAGANVNVINQGHHYVIESVEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEM 1126
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L++ + LE I LT L L++S SRI G++ LK L NL+ L LE
Sbjct: 1127 KDLKRLSMHW-AEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHT 1185
Query: 456 KVTANDIKRLQSRDLPNLVSF 476
++T + +L L L S
Sbjct: 1186 QITDAGVAQLAQLQLNRLYSL 1206
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 140/484 (28%), Positives = 212/484 (43%), Gaps = 95/484 (19%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++ SGL L + +LQ+L+F C + D +HL+ LT L F R+ +T Q +
Sbjct: 92 ISGSGLQSLTNLKHLQNLEFQNC-PLEDDAFQHLKQFPALTHL-FVRHVPLTDQCLVHLK 149
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L GL +L L +L SLN+ + I+++ + LS L LK L+++
Sbjct: 150 DLTQLEVLWLFATQISDSGLEHLNNLKELNSLNL-YQTKISNAGLTHLSELKKLKQLEVN 208
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCE 246
+KVT +G+A L+ E P D L A +L + R S G
Sbjct: 209 ETKVTSAGVAELQ----------EAIPECKILFDRPVLPA-----HLKVARQVKSLGGFV 253
Query: 247 KFSRLTN---LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
++ L L S++L I D+ L L GL LK L L+ T V GL+ L+ L L
Sbjct: 254 RYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQILNELKGLT 313
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL----------TGLT-- 351
S+ + + I+D +L L GLS L SLNL +TD G+ + L TG+T
Sbjct: 314 SLTIMQSPITDAALPHLTGLSRLTSLNLARTAVTDAGMEHIIKLKQLKKLNLISTGVTSA 373
Query: 352 -----HLDLFGARITDSGA--------------------AYLRN---FKN-------LRS 376
H L +I A A+++N FKN S
Sbjct: 374 GMARVHAALPKCKIETGKATAPGDSTQAQAAIAALKAQGAHIQNQRVFKNGKLTSEYFTS 433
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLL-----NLSQNCN------------------LTDKT 413
+ G + DA VKH+K + L + +++ +C +TDK
Sbjct: 434 IRFFGNQIVDAQVKHLKHVPRLKSVSFISTSITDDCTRHLSGLSELETLQLPGTAITDKG 493
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L ++ L L +L++S S IT AGL LK L++L L S +VT + L++ LP L
Sbjct: 494 LATLNDLKSLENLDLSRSGITDAGLVSLKKFPQLKTLNLGSTRVTDAGLTHLKA--LPKL 551
Query: 474 VSFR 477
S +
Sbjct: 552 ESLK 555
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 139/294 (47%), Gaps = 19/294 (6%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+ S+ + +K+TD+ I ++ L+ + L ++ + L SL+ L L L C L
Sbjct: 57 KIDSVSFTNNKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPL 116
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
DD + + L L + + D+ LV+L L L+ L L TQ+ SGL HL+ L
Sbjct: 117 EDDAFQHLKQFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLK 176
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG----------- 349
L S+NL T IS+ L L+ L LK L ++ ++T G+A L
Sbjct: 177 ELNSLNLYQTKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVL 236
Query: 350 LTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
HL + AR S ++R + L S+ + + D + +K LS L L L+
Sbjct: 237 PAHLKV--ARQVKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLN 294
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
Q +++D+ L++++ L GL SL + S IT A L HL L L SL L VT
Sbjct: 295 Q-TSVSDQGLQILNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTAVT 347
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 147/332 (44%), Gaps = 41/332 (12%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N ITD+ +K ++ L +++ L K++ SG+ L L+ L L + CP+ L
Sbjct: 66 NKITDTQIKFINHLKDIRKLGFYNVKISGSGLQSLTNLKHLQNLEFQNCPLEDDAFQHLK 125
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L +L + L+D LT LE L L + I D GL +L L L L L
Sbjct: 126 QFPALTHLFVRHVPLTDQCLVHLKDLTQLEVLWLFATQISDSGLEHLNNLKELNSLNLYQ 185
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDG-----------------------------S 316
T++ ++GL HLS L L+ + ++ T ++
Sbjct: 186 TKISNAGLTHLSELKKLKQLEVNETKVTSAGVAELQEAIPECKILFDRPVLPAHLKVARQ 245
Query: 317 LRKLAGLSS---------LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
++ L G L S++L I D LA L L+GL L L ++D G
Sbjct: 246 VKSLGGFVRYQDLDQHRLLSSISLSRPHIDDKSLACLKGLSGLKSLTLNQTSVSDQGLQI 305
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L K L SL I +TDA + H+ LS LT LNL++ +TD +E I L L LN
Sbjct: 306 LNELKGLTSLTIMQSPITDAALPHLTGLSRLTSLNLARTA-VTDAGMEHIIKLKQLKKLN 364
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ ++ +TSAG+ + L +E+ K TA
Sbjct: 365 LISTGVTSAGMARVH--AALPKCKIETGKATA 394
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 127/283 (44%), Gaps = 13/283 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L S+ L + V D GL L L +L + I+DGG LR +++L LS +
Sbjct: 955 ENLRSLALEHTRVADQGLEDLLRLPRLNTLILDGTT-ITDGGTPLLRKMTSLGMLSLN-S 1012
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+K L L +LDL G+ N + NI++ + S +
Sbjct: 1013 TYITDRGLKDLETLRGLYRLDLNDTKVSEDGVKNFQ--RSQPKCNIEYAAPLASSLQYVI 1070
Query: 177 SGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSL 230
L N+ + V +S + + LQ + ++ E V +CL +S + L
Sbjct: 1071 QELKEAGANVNVINQGHHYVIES-VEFPNHLQGIFAIHNRAEKAKVFDSCLKRISEMKDL 1129
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+++ + + E LT L L+L I D+G+ +L GL NL+ L+L TQ+
Sbjct: 1130 KRLSMHWAEFDNTKLEYIKNLTYLSELDLSGSRIPDQGIKDLKGLVNLQKLKLEHTQITD 1189
Query: 291 SGLRHLSGLT--NLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+G+ L+ L L S++L + + L L + L+ L+L
Sbjct: 1190 AGVAQLAQLQLNRLYSLDLDHSKTTAACLESLKDMQRLRFLSL 1232
>gi|301118238|ref|XP_002906847.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108196|gb|EEY66248.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 648
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 214/414 (51%), Gaps = 35/414 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD G+ L + ++L SL+ + C Q++D G+ L L L L +T QG A A
Sbjct: 258 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 317
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ- 186
L+NLV LD+ C I G L KL S N+ +C+ I D+ + + LT ++ L
Sbjct: 318 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 377
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ C KVTD G+ + L+ LT L++ C ++D+G
Sbjct: 378 MKCGKVTDRGLRSIAKLRNLTSLDMVSC-----------------------FNVTDEGLN 414
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLES 304
+ S+L L+SL L C GI DEG+ L+ L +L L+LS+ QVG+ L + L NL +
Sbjct: 415 ELSKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTN 474
Query: 305 INL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RIT 361
+NL I D + LAGL+ LK+LNL + R +TD + +TGL L L+ ++T
Sbjct: 475 LNLMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLT 534
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G L L+S+++ LTDA ++ ++ +LT L+L C L+D+ + +S +
Sbjct: 535 DAGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKV 594
Query: 421 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QSRDL 470
T L SLN+S IT GL HLK L NL S+ L C KVT I L QS D
Sbjct: 595 TSLTSLNLSECGEITDTGLEHLKTLVNLSSVNLWYCTKVTPVGINFLPVQSVDF 648
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 43/336 (12%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L+++D++G ++TD+G L + L S + +C +I D +H+ L+ + L+F +
Sbjct: 321 NLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKC 380
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G+++ A L NL LD+ C +TD + L
Sbjct: 381 GKVTDRGLRSIAKLRNLTSLDMVSCFN------------------------VTDEGLNEL 416
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLN 234
S L LKSL + CS + D GIA L L L +L+L C V L + AL +L LN
Sbjct: 417 SKLNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLN 476
Query: 235 LNRC-QLSDDGCEKFSRLTNLESLNLDSCGI----GDEGLVNLTGLCNL---KCLELSDT 286
L RC ++ DDG + LT L++LNL +C + + + +TGL +L C +L+D
Sbjct: 477 LMRCNRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTD- 535
Query: 287 QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL 344
+G+ +LS LT L+SI+L S + ++D SL + +L SL+L + ++D G+ L
Sbjct: 536 ----AGILNLSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTL 591
Query: 345 TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
+ +T LT L+L ITD+G +L+ NL S+ +
Sbjct: 592 SKVTSLTSLNLSECGEITDTGLEHLKTLVNLSSVNL 627
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 27/233 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L LG G+ D+ + + S SSL+ +DLS V + L+ + NL +L+ C
Sbjct: 422 LKSLYLGGCSGIRDEGIAAL-SHLSSLVILDLSNCRQVGNKALLGIGALRNLTNLNLMRC 480
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN 150
+I D G+ HL GL+ L +L+ +T + K A + L L L C ++ G++N
Sbjct: 481 NRIDDDGIAHLAGLTRLKTLNLANCRLLTDRATKTVAQMTGLESLVLWYCNKLTDAGILN 540
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLL 209
L L KL+S+++ C+ +TD+ ++ + NL SL + +C ++D G+ L + LT L
Sbjct: 541 LSTLTKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSL 600
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
NL C +++D G E L NL S+NL C
Sbjct: 601 NLSECG-----------------------EITDTGLEHLKTLVNLSSVNLWYC 630
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 24/198 (12%)
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG---ISDGSLRKL--AGLS 324
VNLTG C L+D V L +LSGLT++ + G ++D S++ L + +
Sbjct: 145 VNLTG-----CSSLTDESV--EQLANLSGLTSV-----ALKGCYQVTDKSIKLLTESQSN 192
Query: 325 SLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC- 380
SL S+NL + ++D G+ A+ S L+ L +L+L G +++ D+G L KNL++L +
Sbjct: 193 SLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWY 252
Query: 381 --GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 437
G LTD G+ + +++SLT LNLS LTD+ + +S L L L ++N +T G
Sbjct: 253 CNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQG 312
Query: 438 LRHLKPLKNLRSLTLESC 455
L PL NL +L + C
Sbjct: 313 FLALAPLVNLVTLDVAGC 330
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL+ S +TD+ L + NL SLD C +SD G+ L +++LTSL+
Sbjct: 545 TKLQSIDLASCSKLTDASLEAFLNMPNLTSLDLGNCCLLSDEGMLTLSKVTSLTSLNLSE 604
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G++ L+NL ++L CT++
Sbjct: 605 CGEITDTGLEHLKTLVNLSSVNLWYCTKV 633
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ SLEAF + L L LG ++D+ M + S+ +SL S++LS ++TD+GL HL
Sbjct: 558 LTDASLEAFLNMPNLTSLDLGNCCLLSDEGM-LTLSKVTSLTSLNLSECGEITDTGLEHL 616
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL 102
K NL S++ +C +++ G+ L
Sbjct: 617 KTLVNLSSVNLWYCTKVTPVGINFL 641
>gi|46446912|ref|YP_008277.1| hypothetical protein pc1278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400553|emb|CAF24002.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 731
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 213/400 (53%), Gaps = 32/400 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C +++D GL +L L +L L+ +T G+
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L+ L L+L C ++ + GL++L+ LM L+ L++ C +TD+ + L+ L L+
Sbjct: 392 HLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHLAPLVALQH 451
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LS 241
L +S C+ +T +G+A+LK L L LNL C +T A L L+ L +L +L+L+ C+ L+
Sbjct: 452 LCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDLSCCRNLT 511
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 299
D G L L+ L+L+ C D GL +LT L L+ L LS + + +GL +L L
Sbjct: 512 DAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAGLAYLMPL 571
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG 357
L +NL+ +D L LA L +L+ LNL D ++T+ GL LT L L HLDL
Sbjct: 572 VALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVALQHLDLSE 631
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
LTDAG+ H+ L +LT L+LS+ LTD L +
Sbjct: 632 CE-----------------------KLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHL 668
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
+ L L LN++ ++T AGL HL PL L+ L L CK
Sbjct: 669 TPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCK 708
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 186/353 (52%), Gaps = 10/353 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL++L +LQ L+ CI+++D GL HL L L L+ N +T G+
Sbjct: 360 LTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLR 419
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L+ L+ L + C +T + + L L NL+ L +
Sbjct: 420 PLMALQHLDLSCCRNLTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNL 479
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC K+TD+G+A+L L L L+L C +T A L L L +L +L+LN C+ +D G
Sbjct: 480 NSCYKLTDAGLAHLTPLMALQHLDLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAG 539
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 302
+ L L+ LNL C + D GL L L L L L+ +GL HL+ L L
Sbjct: 540 LTHLTPLVALQHLNLSCCRNLTDAGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVAL 599
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-R 359
+ +NL +++ L L L +L+ L+L + ++TD GL L L LTHLDL +
Sbjct: 600 QHLNLGDCYRLTNAGLEHLTPLVALQHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDK 659
Query: 360 ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+TD+G A+L + L+ L + LTDAG+ H+ L +L L L N T+
Sbjct: 660 LTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYCKNFTE 712
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 10/311 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + C K+TD+G+ YL L L LNL C
Sbjct: 323 EIERLNFSKNASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDC 382
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L+ L +L +LNL C +L++ G L L+ L+L C + D GL +
Sbjct: 383 IKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAH 442
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSL 329
L L L+ L LS+ T + +GL HL L NL+ +NL S ++D L L L +L+ L
Sbjct: 443 LAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHL 502
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI-CGGGLTD 386
+L R +TD GLA L L L HLDL + TD+G +L L+ L + C LTD
Sbjct: 503 DLSCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTD 562
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ ++ L +L+ LNL+ N TD L ++ L L LN+ + R+T+AGL HL PL
Sbjct: 563 AGLAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLV 622
Query: 446 NLRSLTLESCK 456
L+ L L C+
Sbjct: 623 ALQHLDLSECE 633
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 37/345 (10%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T++GL+HL+ LQ LD + C ++D GL HL A
Sbjct: 410 LTNAGLMHLRPLMALQHLDLSCCRNLTDAGLAHL-------------------------A 444
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L CT + G GL +LK L+ L+ LN+ C +TD+ + L+ L L+ L +
Sbjct: 445 PLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSCYKLTDAGLAHLTPLMALQHLDL 504
Query: 188 SCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
SC + +TD+G+A+L+ L L L+L C T A L L+ L +L +LNL+ C+ L+D G
Sbjct: 505 SCCRNLTDAGLAHLRPLVALQHLDLNCCKNFTDAGLTHLTPLVALQHLNLSCCRNLTDAG 564
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
L L LNL C D GL +L L L+ L L D ++ ++GL HL+ L L
Sbjct: 565 LAYLMPLVALSHLNLAGCHNFTDAGLAHLAPLVALQHLNLGDCYRLTNAGLEHLTPLVAL 624
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGAR 359
+ ++LS ++D L L L +L L+L + ++TD GLA LT L L HL+L + +
Sbjct: 625 QHLDLSECEKLTDAGLTHLVPLVALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDK 684
Query: 360 ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 403
+TD+G A+L L+ L + T+ G+ H K SS+ L+L
Sbjct: 685 LTDAGLAHLTPLLALQDLYLGYCKNFTEVGLAHFK--SSVAPLHL 727
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 293 LRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGL 350
L+H S +E +N S ++D L L +LK+L+L + ++TDTGL L L L
Sbjct: 317 LKHFSN--EIERLNFSKNASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSL 374
Query: 351 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+L+LF ++TD+G A+L LR L + G LT+AG+ H++ L +L L+LS N
Sbjct: 375 QYLNLFDCIKLTDAGLAHLTPLVALRHLNLMGCNKLTNAGLMHLRPLMALQHLDLSCCRN 434
Query: 409 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
LTD L ++ L L L +S + +T AGL HLKPL NL+ L L SC
Sbjct: 435 LTDAGLAHLAPLVALQHLCLSECTNLTGAGLAHLKPLVNLQHLNLNSC 482
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS D +TD+GL HL LQ L+ N+C +++D GL HL L L L
Sbjct: 648 ALTHLDLSECDKLTDAGLAHLTPLEALQHLNLNWCDKLTDAGLAHLTPLLALQDLYLGYC 707
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
T G+ F + + L + R
Sbjct: 708 KNFTEVGLAHFKSSVAPLHLKIIR 731
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLR 439
LTDA + +K+ +L L+L + LTD L ++ L L LN+ + ++T AGL
Sbjct: 332 NASLTDAHLLALKNCKNLKALHLQECYKLTDTGLVYLAPLVSLQYLNLFDCIKLTDAGLA 391
Query: 440 HLKPLKNLRSLTLESCKVTAN 460
HL PL LR L L C N
Sbjct: 392 HLTPLVALRHLNLMGCNKLTN 412
>gi|46447250|ref|YP_008615.1| hypothetical protein pc1616 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400891|emb|CAF24340.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 813
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 211/401 (52%), Gaps = 16/401 (3%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL + LQ LD + C + D GL HL L+ L L + T G+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 131 INLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
++L LDL + + G GL +L L+ L L + C +TD+ + L+ L L+ L +S
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR----CQ-LSD 242
C +TD G+ +L L L L+L+ C +T A L L+ L +L +L+L C L+D
Sbjct: 488 CKNLTDDGLVHLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTD 547
Query: 243 DGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLT 300
DG S LT L+ L+L + D GL +LT L L+ L+LS + + GL +L+ L
Sbjct: 548 DGLAHLSSLTALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLV 607
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-A 358
L+ ++L + I+D L LA LS+L+ L+L D R+I GLA LTSL L HLDL G
Sbjct: 608 ALQYLSLKGSDITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCY 667
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ YL + NL+ L + GL G++ + L +L L+LS NLTD+ L +
Sbjct: 668 HLPSFQLIYLSSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYL 727
Query: 418 SGLTG--LVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L G L L++S +IT GL HL L L+ L L C
Sbjct: 728 TSLVGLDLQHLDLSGCKKITDTGLAHLTSLVTLQHLNLSEC 768
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 224/426 (52%), Gaps = 18/426 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L L + + D + ++S ++L +DLS S + TD+GL HL +LQ LD +
Sbjct: 379 ALQHLDLSECYLLKDTGLAHLSSL-TALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSK 437
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLV 149
++ GL HL L L L +T G+ L+ L LDL C + GLV
Sbjct: 438 SENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLV 497
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-----CSKVTDSGIAYLKGLQ 204
+L L+ L+ L++K C +TD+ + L+ LT L+ L + C +TD G+A+L L
Sbjct: 498 HLSSLVALQYLSLKLCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLT 557
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L L+L +T A L L+ L +L +L+L+ C+ L+D+G + L L+ L+L
Sbjct: 558 ALKHLDLSWRENLTDAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGS 617
Query: 263 GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKL 320
I DEGL +L L L+ L L+D ++ GL HL+ L NLE ++LS + L L
Sbjct: 618 DITDEGLEHLAHLSALRHLSLNDCRRINGYGLAHLTSLVNLEHLDLSGCYHLPSFQLIYL 677
Query: 321 AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFK--NLRS 376
+ L +L+ LNL + + GL LT L L +LDL G +TD G AYL + +L+
Sbjct: 678 SSLVNLQHLNLSECFGLCHDGLEDLTPLMNLQYLDLSGCINLTDQGLAYLTSLVGLDLQH 737
Query: 377 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-IT 434
L++ G +TD G+ H+ L +L LNLS+ NLTD L + L L L + + IT
Sbjct: 738 LDLSGCKKITDTGLAHLTSLVTLQHLNLSECVNLTDTGLAHLVSLVNLQYLELRECKNIT 797
Query: 435 SAGLRH 440
AGL H
Sbjct: 798 DAGLAH 803
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 191/371 (51%), Gaps = 26/371 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+ L N L ++ NN I +GL+N + +I N ++E LN
Sbjct: 282 LKELLNFARL-YQLNNLINYLEFTVVSGLLNNTS-HVNEFEKILNHFSN-----EIEGLN 334
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKV----TDSGIAYLKGLQKLTLLNLEGCPVT 217
+ + T++ L N K+L++ C K+ D+G+A+L L L L+L C +
Sbjct: 335 LSGKDFFTEAHFL---ALKNCKNLKVLCLKIFYTPIDTGLAHLTSLTALQHLDLSECYLL 391
Query: 218 AAC-LDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTG 274
L LS+L +L YL+L+ +D G + L +L+ L+L S + +GL +LT
Sbjct: 392 KDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPLVSLQHLDLSKSENLTGDGLAHLTP 451
Query: 275 LCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
L L+ L LSD + + +GL HL+ L L ++LS ++D L L+ L +L+ L+L
Sbjct: 452 LVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSECKNLTDDGLVHLSSLVALQYLSLK 511
Query: 333 -ARQITDTGLAALTSLTGLTHLDL---FG--ARITDSGAAYLRNFKNLRSLEICG-GGLT 385
+TD GLA LT LT L HLDL G +TD G A+L + L+ L++ LT
Sbjct: 512 LCENLTDAGLAHLTPLTTLEHLDLGLDLGCCHNLTDDGLAHLSSLTALKHLDLSWRENLT 571
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+ H+ L++L L+LS NLTD+ L ++ L L L++ S IT GL HL L
Sbjct: 572 DAGLAHLTPLTALRHLDLSWCENLTDEGLAYLTPLVALQYLSLKGSDITDEGLEHLAHLS 631
Query: 446 NLRSLTLESCK 456
LR L+L C+
Sbjct: 632 ALRHLSLNDCR 642
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 338 DTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDL 395
DTGLA LTSLT L HLDL + D+G A+L + L+ L++ G TDAG+ H+ L
Sbjct: 368 DTGLAHLTSLTALQHLDLSECYLLKDTGLAHLSSLTALQYLDLSDSGNFTDAGLAHLTPL 427
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLES 454
SL L+LS++ NLT L ++ L L L +S+ R +T AGL HL PL LR L L
Sbjct: 428 VSLQHLDLSKSENLTGDGLAHLTPLVALRHLGLSDCRNLTDAGLAHLTPLVALRHLDLSE 487
Query: 455 CKVTAND 461
CK +D
Sbjct: 488 CKNLTDD 494
>gi|414586495|tpg|DAA37066.1| TPA: hypothetical protein ZEAMMB73_067914 [Zea mays]
Length = 115
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 99/112 (88%)
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
R FKN++SLE+CGG +TDAGVK+IKDL +LTLLNLSQN LTDKTLELISGLT LVSLN
Sbjct: 4 FRFFKNIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLN 63
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
VSNSR++++GL HLKPL+NLRSL+LESC+VTA+++ +L+ LPNL+S RPE
Sbjct: 64 VSNSRVSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLRLVALPNLISVRPE 115
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ N+K L L LN+ +TD ++ +SGLT L SL +S S+V++SG+ +LK LQ
Sbjct: 23 AGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKPLQN 82
Query: 206 LTLLNLEGCPVTAACLDSL 224
L L+LE C VTA+ +D L
Sbjct: 83 LRSLSLESCRVTASEMDKL 101
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQ 239
N++SL++ +TD+G+ +K L+ LTLLNL + +T L+ +S L +L LN++ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGI 264
+S+ G L NL SL+L+SC +
Sbjct: 69 VSNSGLHHLKPLQNLRSLSLESCRV 93
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ 335
N++ LE+ + +G++++ L L +NLS G ++D +L ++GL++L SLN+ +
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
++++GL L L L L L R+T S LR
Sbjct: 69 VSNSGLHHLKPLQNLRSLSLESCRVTASEMDKLR 102
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+QSL+ + I+D G+++++ L LT L+ +N +T + ++ +GL LV L++
Sbjct: 9 NIQSLEVCGGL-ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNS 67
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS--GLTNLKSLQ 186
+ GL +LK L L SL+++ C +T S+M L L NL S++
Sbjct: 68 RVSNSGLHHLKPLQNLRSLSLESCR-VTASEMDKLRLVALPNLISVR 113
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGAR 359
N++S+ + I+D ++ + L +L LNL ++TD L ++ LT L L++ +R
Sbjct: 9 NIQSLEVCGGLITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSR 68
Query: 360 ITDSGAAYLRNFKNLRSLEI 379
+++SG +L+ +NLRSL +
Sbjct: 69 VSNSGLHHLKPLQNLRSLSL 88
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ ++ +D AL L L Q + DK +++I S ++L+S+++S S V++SGL HLK
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELI-SGLTALVSLNVSNSRVSNSGLHHLK 78
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR--GLSNLTSL 111
NL+SL C +++ ++ LR L NL S+
Sbjct: 79 PLQNLRSLSLESC-RVTASEMDKLRLVALPNLISV 112
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++D G + L L LNL G + D+ L ++GL L L +S+++V +SGL HL
Sbjct: 20 ITDAGVKNIKDLKALTLLNLSQNGKLTDKTLELISGLTALVSLNVSNSRVSNSGLHHLKP 79
Query: 299 LTNLESINLSFTGISDGSLRKL 320
L NL S++L ++ + KL
Sbjct: 80 LQNLRSLSLESCRVTASEMDKL 101
>gi|406835528|ref|ZP_11095122.1| hypothetical protein SpalD1_27934 [Schlesneria paludicola DSM
18645]
Length = 590
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 234/496 (47%), Gaps = 59/496 (11%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L+ F D L DL L P + D+ + +A +SL++++LS + +TD GL HLK +NL+
Sbjct: 71 LKPFSD--LSDLDLHAIP-ILDRDLKELADL-TSLVNLNLSDTRITDRGLFHLKRLTNLE 126
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
++ I+D G++ L L L+ + IT +G++ + NL L L+
Sbjct: 127 TVWLQNT-SITDAGIKELASFERLAELNLS-DTRITDRGLRELSDFQNLTTLWLQNVEMT 184
Query: 145 HGGLVNLKGLMKLESLNIKWCNC-----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GL LK L + +L++ N ITD ++ LS L L+ L ++ + DSG+
Sbjct: 185 DDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIADSGLTS 244
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L+ L+ LT+L+L G +T L+ L L L L + Q+SD G L NL +L +
Sbjct: 245 LRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTALKGLKNLTTLLI 304
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----- 314
S I GL LT L LK L+LSDTQV L LS + L + LS T I+D
Sbjct: 305 GSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRS 364
Query: 315 -----------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ +L L L L+L ITDTGL L L LT L+L
Sbjct: 365 LRELKRLRRLTLGGTQITDISELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDA 424
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN----------LSQNC 407
++TD+ + L+ +L+ L + ++ G K ++ L LT+L L + C
Sbjct: 425 TQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREIC 484
Query: 408 NL-------------TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L TD L + L GL L + N+ +T AG+ L L LR+L +
Sbjct: 485 TLKSLKTLVISGTRVTDDGLAELHQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISH 544
Query: 455 CKVTA---NDIKRLQS 467
K+T +DIKRL++
Sbjct: 545 NKITDTSLSDIKRLKN 560
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 195/412 (47%), Gaps = 41/412 (9%)
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
F + S+ L L+ S+L+ L I + +K A L +LV L+L G
Sbjct: 57 FEEAHKFSEKHLHLLKPFSDLSDLDLH-AIPILDRDLKELADLTSLVNLNLSDTRITDRG 115
Query: 148 LVNLKGLMKLESLNIKWCN--CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L +LK L LE++ W ITD+ +K L+ L L +S +++TD G+ L Q
Sbjct: 116 LFHLKRLTNLETV---WLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQN 172
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNL------NRCQLSDDGCEKFSRLTNLESLNL 259
LT L L+ +T L +L L ++ L+L N +++D+G E+ S L L L L
Sbjct: 173 LTTLWLQNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYL 232
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ I D GL +L L +L L+L TQ+ GL L GL LE+ L+ T ISD L
Sbjct: 233 ANIPIADSGLTSLRRLKHLTVLDLRGTQITDEGLNELRGLHELETFKLTKTQISDAGLTA 292
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L GL +L +L + + QIT TGL LT+L L LDL ++TD L + + L L +
Sbjct: 293 LKGLKNLTTLLIGSNQITGTGLQELTNLDQLKTLDLSDTQVTDVELNRLSSIRTLTDLRL 352
Query: 380 CGGGLTDAG-------------------------VKHIKDLSSLTLLNLSQNCNLTDKTL 414
+TD G + H++DL+ L L + +TD L
Sbjct: 353 SDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNHLRDLTHLDL----RVTPITDTGL 408
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ L L SLN+ +++T A L LK L +L+ L+L ++ K L+
Sbjct: 409 HGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRTAISGLGFKSLE 460
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/377 (33%), Positives = 178/377 (47%), Gaps = 32/377 (8%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL L D L+ L + I I+D GL LR L +LT L R IT +G+
Sbjct: 213 ITDEGLEQLSDLPELRHL-YLANIPIADSGLTSLRRLKHLTVLDLR-GTQITDEGLNELR 270
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL L L + GL LKGL L +L I N IT + ++ L+ L LK+L +S
Sbjct: 271 GLHELETFKLTKTQISDAGLTALKGLKNLTTLLI-GSNQITGTGLQELTNLDQLKTLDLS 329
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC----------------------LDSLSA 226
++VTD + L ++ LT L L P+T + L+
Sbjct: 330 DTQVTDVELNRLSSIRTLTDLRLSDTPITDVGLRSLRELKRLRRLTLGGTQITDISELNH 389
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
L L +L+L ++D G L +L SLNLD+ + D L L L +LK L LS T
Sbjct: 390 LRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVHLKELSLSRT 449
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ G + L L L + I+D LR++ L SLK+L + ++TD GLA L
Sbjct: 450 AISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVTDDGLAELHQ 509
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L GL L + +TD+G + L LR+L I +TD + IK L +LT+L + +N
Sbjct: 510 LEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKNLTMLRI-RN 568
Query: 407 CNLTDKTLELISGLTGL 423
+TD SGL G
Sbjct: 569 TEITD------SGLNGF 579
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 173/386 (44%), Gaps = 45/386 (11%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQG-------SSLLSVDLSGSDVTD 71
+T+ LE D L+ L L P IA G L +DL G+ +TD
Sbjct: 213 ITDEGLEQLSDLPELRHLYLANIP---------IADSGLTSLRRLKHLTVLDLRGTQITD 263
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
GL L+ L++ QISD GL L+GL NLT+L +N IT G++ L
Sbjct: 264 EGLNELRGLHELETFKLTKT-QISDAGLTALKGLKNLTTLLIG-SNQITGTGLQELTNLD 321
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--------------------- 170
L LDL L L + L L + ITD
Sbjct: 322 QLKTLDLSDTQVTDVELNRLSSIRTLTDLRLS-DTPITDVGLRSLRELKRLRRLTLGGTQ 380
Query: 171 -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+D+ L+ L +L L + + +TD+G+ L L+ LT LNL+ VT A L L L
Sbjct: 381 ITDISELNHLRDLTHLDLRVTPITDTGLHGLGDLKHLTSLNLDATQVTDASLSELKCLVH 440
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L+L+R +S G + RL L L D C I DEGL + L +LK L +S T+V
Sbjct: 441 LKELSLSRTAISGLGFKSLERLEQLTVLRCDRCLIADEGLREICTLKSLKTLVISGTRVT 500
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
GL L L L+ + + ++D + +L L L++L + +ITDT L+ + L
Sbjct: 501 DDGLAELHQLEGLQELRIENNALTDAGMSELMVLGKLRTLGISHNKITDTSLSDIKRLKN 560
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLR 375
LT L + ITDSG L FK+ R
Sbjct: 561 LTMLRIRNTEITDSG---LNGFKDAR 583
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 31/288 (10%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
K ++ + LK L+ L+L P+ L L+ L SL LNL+ +++D G
Sbjct: 59 EAHKFSEKHLHLLKPFSDLSDLDLHAIPILDRDLKELADLTSLVNLNLSDTRITDRGLFH 118
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
RLTNLE++ L + I D G+ L L L LSDT++ GLR LS NL ++ L
Sbjct: 119 LKRLTNLETVWLQNTSITDAGIKELASFERLAELNLSDTRITDRGLRELSDFQNLTTLWL 178
Query: 308 SFTGISDGSLRKLAGLSSLKSLNL------DARQITDTGLAALTSLTGLTHLDLFGARIT 361
++D L+ L L ++ +L+L + +ITD GL L+ L L HL L I
Sbjct: 179 QNVEMTDDGLQALKRLKTITTLDLSNLNGLNTIRITDEGLEQLSDLPELRHLYLANIPIA 238
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
DSG LR K+L L++ G +TD G+ ++ GL
Sbjct: 239 DSGLTSLRRLKHLTVLDLRGTQITDEGLNELR-------------------------GLH 273
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
L + ++ ++I+ AGL LK LKNL +L + S ++T ++ L + D
Sbjct: 274 ELETFKLTKTQISDAGLTALKGLKNLTTLLIGSNQITGTGLQELTNLD 321
>gi|406835014|ref|ZP_11094608.1| hypothetical protein SpalD1_25335 [Schlesneria paludicola DSM
18645]
Length = 497
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 136/423 (32%), Positives = 218/423 (51%), Gaps = 7/423 (1%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIA--SQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
EA + + + N+K ++++ S ++L+ + S +T + L L NL
Sbjct: 70 EALPGRPVTTIYFDGHGKFNEKHLNLLMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNL 129
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
SL F +IS+ G+ L+ L NLT+LS + +T G++ + L L L +
Sbjct: 130 TSLHFE-NTEISNEGIHELQELKNLTTLSLHTTH-VTDAGLRNLREVSKLTTLSLSGNSI 187
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
G L L L SL+++ N I D + +S L NLK+L + +TDS + L+ +
Sbjct: 188 SDDGFKELGELKHLSSLSLRLEN-IDDVQLDEISKLENLKTLSLHVPSITDSELKQLRTV 246
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
+ LT L L +T A L L L +L L+L+ Q++D G ++ +L NL SL L+ CG
Sbjct: 247 KNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQLENLTSLYLEGCG 306
Query: 264 -IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
I D G L + NLK L L+ + G++ L L +LE ++LS T I+D ++++ G
Sbjct: 307 GITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRTPITDHGIQEIGG 366
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG- 381
L++L +L L ITD GL + L L L L A ITD+G L F N+ L +
Sbjct: 367 LTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKELGKFHNMNMLHLIQC 426
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
G+TDAG+K ++DL L++ L N+TD ++ + L LNV +++T +G+ L
Sbjct: 427 DGITDAGLKELRDLKKLSMFELYGCRNVTDAGIDELKEHKQLTILNVGATQVTVSGVNKL 486
Query: 442 KPL 444
K L
Sbjct: 487 KEL 489
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 166/299 (55%), Gaps = 2/299 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT + + LSGL NL SL +++++ GI L+ L+ LT L+L VT A L +L +
Sbjct: 115 ITSARLSDLSGLKNLTSLHFENTEISNEGIHELQELKNLTTLSLHTTHVTDAGLRNLREV 174
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L+L+ +SDDG ++ L +L SL+L I D L ++ L NLK L L
Sbjct: 175 SKLTTLSLSGNSISDDGFKELGELKHLSSLSLRLENIDDVQLDEISKLENLKTLSLHVPS 234
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ S L+ L + NL + L + I+D L+ L L +L L+L + QITD GL + L
Sbjct: 235 ITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNLTDLDLSSTQITDAGLKEIGQL 294
Query: 348 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L L G ITD G LRN KNL+ L + G+TD G+K + L SL LL+LS+
Sbjct: 295 ENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGITDLGMKGLGQLKSLELLDLSRT 354
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+TD ++ I GLT L +L + S IT GLR + L+NL+ L L+S +T +K L
Sbjct: 355 P-ITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLENLKELYLKSAFITDAGMKEL 412
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 195/395 (49%), Gaps = 6/395 (1%)
Query: 77 LKDCSNLQSLDF-NF-CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L S+L +L F NF QI+ L L GL NLTSL F N I+ +G+ L NL
Sbjct: 96 LMPFSHLTTLVFSNFKSSQITSARLSDLSGLKNLTSLHFE-NTEISNEGIHELQELKNLT 154
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L L GL NL+ + KL +L++ N I+D K L L +L SL + + D
Sbjct: 155 TLSLHTTHVTDAGLRNLREVSKLTTLSLSG-NSISDDGFKELGELKHLSSLSLRLENIDD 213
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
+ + L+ L L+L +T + L L + +L L L +++D G + L NL
Sbjct: 214 VQLDEISKLENLKTLSLHVPSITDSELKQLRTVKNLTKLFLINSKITDAGLKPLLDLKNL 273
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+L S I D GL + L NL L L + G R L + NL+ + L+ GI+
Sbjct: 274 TDLDLSSTQITDAGLKEIGQLENLTSLYLEGCGGITDVGFRELRNIKNLKRLALARCGIT 333
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D ++ L L SL+ L+L ITD G+ + LT L+ L L G+ ITD G + +N
Sbjct: 334 DLGMKGLGQLKSLELLDLSRTPITDHGIQEIGGLTNLSTLWLLGSNITDLGLREINGLEN 393
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR- 432
L+ L + +TDAG+K + ++ +L+L Q +TD L+ + L L + R
Sbjct: 394 LKELYLKSAFITDAGMKELGKFHNMNMLHLIQCDGITDAGLKELRDLKKLSMFELYGCRN 453
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+T AG+ LK K L L + + +VT + + +L+
Sbjct: 454 VTDAGIDELKEHKQLTILNVGATQVTVSGVNKLKE 488
>gi|46446626|ref|YP_007991.1| hypothetical protein pc0992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400267|emb|CAF23716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 583
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 200/365 (54%), Gaps = 19/365 (5%)
Query: 47 KWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ +I + + ++D S + +TD+ L+ LK+C NL+ L C+ I+D GL HL L
Sbjct: 216 EFEKIINHFSNEIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPL 275
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
L L +T G+ L L LDL C GL +L L L+ LN+ +C
Sbjct: 276 VALQHLDLSDCENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFC 335
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+ TD+ + L+ LT L+ L + +TD+G+A+L L L L+L GC +T A L L
Sbjct: 336 SNATDAGLAHLTPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHL 395
Query: 225 SALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLK--- 279
L +L +LNLN C+ L+D G + LT L+ L+L C I D+GL +LT L L+
Sbjct: 396 RPLTALQHLNLNWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLN 455
Query: 280 ---CLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DAR 334
C +L+D +GL HL+ LT L+ +NL+ + ++D L L L+ L+ L L D +
Sbjct: 456 LSGCYKLTD-----AGLAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCK 510
Query: 335 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 392
+TD GLA LT LT L HL+L G ++TD+G A+L + L+ L++ LTD G+
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 393 KDLSS 397
K L++
Sbjct: 571 KTLAT 575
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 34/346 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+L+ +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 227 EIEALDFSNNAHLTDAHLLALKNCENLKVLHLEACLAITDDGLAHLAPLVALQHLDLSDC 286
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNL 272
+T L L+ L +L +L+L C +D G + LT L+ LNL C D GL +L
Sbjct: 287 ENLTDVGLAHLTPLTALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHL 346
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 331
T L L+ L+L + +GL HL+ LT L+ ++L ++D L L L++L+ LNL
Sbjct: 347 TPLTALQHLDLRGCYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNL 406
Query: 332 DA-RQITDTGLAALTSLTGLTHLDLFG--------------------------ARITDSG 364
+ R +TD GLA LT LT L HLDL ++TD+G
Sbjct: 407 NWCRNLTDAGLAHLTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAG 466
Query: 365 AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
A+L L+ L + LTDAG+ H+ L+ L L L+ NLTD L ++ LT L
Sbjct: 467 LAHLTLLTGLQHLNLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTAL 526
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
LN+S ++T AGL HL L L+ L L C +T + + R ++
Sbjct: 527 QHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKT 572
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 156/283 (55%), Gaps = 10/283 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DL G TD+GL HL + LQ L+ +FC +D GL HL L+ L L R
Sbjct: 301 TALQHLDLRGCYFTDAGLAHLTPLTALQHLNLSFCSNATDAGLAHLTPLTALQHLDL-RG 359
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ L L LDL C + GL +L+ L L+ LN+ WC +TD+ +
Sbjct: 360 CYLTDAGLAHLTPLTGLQHLDLIGCKDLTDAGLAHLRPLTALQHLNLNWCRNLTDAGLAH 419
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ LT L+ L +S CS +TD G+A+L L L LNL GC +T A L L+ L L +L
Sbjct: 420 LTPLTALQHLDLSFCSNITDDGLAHLTLLTTLQHLNLSGCYKLTDAGLAHLTLLTGLQHL 479
Query: 234 NLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGS 290
NLN + L+D G + L L+ L L C + D GL +LT L L+ L LS ++
Sbjct: 480 NLNWYKNLTDAGLAHLTPLAGLQYLALTDCKNLTDAGLAHLTPLTALQHLNLSGCYKLTD 539
Query: 291 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
+GL HL+ LT L+ ++LS+ ++D L + L++ SLNL+
Sbjct: 540 AGLAHLTSLTALQYLDLSYCMNLTDDGLDRFKTLAT--SLNLE 580
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ + C +++D GL HL L+ L L +T G+ F
Sbjct: 511 NLTDAGLAHLTPLTALQHLNLSGCYKLTDAGLAHLTSLTALQYLDLSYCMNLTDDGLDRF 570
Query: 128 AGLINLVKLDLER 140
L + L++ R
Sbjct: 571 KTLATSLNLEIIR 583
>gi|397646482|gb|EJK77289.1| hypothetical protein THAOC_00890 [Thalassiosira oceanica]
Length = 702
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 194/388 (50%), Gaps = 53/388 (13%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ IT +GM AF+ L + L C R+ +VN+ L SLN+ C C+TD ++
Sbjct: 293 HGITGKGMLAFSRSPRLHTISLANCRRLTDEAVVNISHCTSLTSLNVGGCRCLTDRSLEA 352
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLK-----------------GLQK------LTLLNL 211
+SGL +L+ L +S C +TD G+ +L +Q+ L L L
Sbjct: 353 MSGLLDLRRLDLSQCDLITDDGLIFLGELDLLEELSLGNKSCGMAIQQRNRSIALKTLRL 412
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSRLTNLESLNLDSC-GIGDEGL 269
C +T LD L L SL L++N C LS E +LTNL SL+ C GI
Sbjct: 413 ARCAITNDGLDYLEQLQSLEDLDINGCSLSSTALGESLEKLTNLNSLDASHCPGI----- 467
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L L+ L L+DTQ+ + + ++ L L S++L + +S LR LA L L SL
Sbjct: 468 -----LPGLEVLNLADTQISDNAMSKVAKLAGLRSLSLFYCNVSSRGLRHLASLEKLDSL 522
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
NLD+R I D G R+TD G +Y+ K L +L++ GGG+ D G
Sbjct: 523 NLDSRDIGDEGRPN---------------RVTDLGCSYIAKIKTLTTLQLAGGGVGDLGC 567
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
HI + +L LNLSQN ++T++ ++ L+ L +LN+SN+R+TS L+ L L+S
Sbjct: 568 AHIATIDALESLNLSQNESITNRGAASLAALSNLRALNLSNTRVTSNALKFFHGLSKLQS 627
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L C + + I+ LQ ++P L R
Sbjct: 628 LALYGCIMEDSPIESLQD-EVPTLRCLR 654
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGS 57
LP+D+ +I L L ++ A +C L LCL GVND+++ + S GS
Sbjct: 47 LPQDVVDRIVKSLTAHAALNCTTMRALSNCELGTLCLADARGVNDEFLMALCSSGS 102
>gi|46447300|ref|YP_008665.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400941|emb|CAF24390.1| hypothetical protein pc1666 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 518
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 189/370 (51%), Gaps = 58/370 (15%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+ L+ LK+C NL+ L C ++D GL HL A L
Sbjct: 199 DAHLLTLKNCKNLKVLYLQECHNLTDAGLSHL-------------------------APL 233
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
+ L L+L C+++ GL +L L+ L+ L++ C +TD+ + L+ L L+ L +S
Sbjct: 234 VTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSY 293
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
CSK+TD+G+A+L L L L+L C +T L L+ L +L +LNL+ C +L+D G
Sbjct: 294 CSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLA 353
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLES 304
+ L L+ L+L C + + GL +LT L L+ LELS + +GL HL+ L L+
Sbjct: 354 HLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQH 413
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDS 363
+NLS ++ITD GLA LT L L HLDL G ++TD
Sbjct: 414 LNLSI-----------------------CKKITDVGLAHLTPLVALQHLDLSGCDKLTDV 450
Query: 364 GAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G A+L L+ L++ C LTDAG+ H+K L +L LNLS NLTD L LT
Sbjct: 451 GLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT- 509
Query: 423 LVSLNVSNSR 432
SLN+ SR
Sbjct: 510 -TSLNLKLSR 518
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 177/341 (51%), Gaps = 34/341 (9%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K F+ I + E I L+ LK L+ L ++ C+ +TD+ + L+ L L+
Sbjct: 179 LKFFSNEIEALNFS-ENTYLIDAHLLTLKNCKNLKVLYLQECHNLTDAGLSHLAPLVTLQ 237
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L +S CSK+TD+G+A+L L L L+L C +T A L L+ L +L +LNL+ C +L
Sbjct: 238 HLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKL 297
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSG 298
+D G + L L+ L+L C + D GL +LT L L+ L LS ++ GL HL+
Sbjct: 298 TDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTS 357
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL- 355
L L+ ++L++ +++ L L L +L+ L L +TD GLA LTSL L HL+L
Sbjct: 358 LVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLS 417
Query: 356 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ITD G A+L L+ L++ G LTD G+ H+ L +L L+L+ NLTD
Sbjct: 418 ICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTD--- 474
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
AGL HLKPL L+ L L C
Sbjct: 475 ---------------------AGLVHLKPLMALQHLNLSYC 494
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 157/289 (54%), Gaps = 8/289 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L+ ++C +++D GL HL L L L + +T G+
Sbjct: 221 NLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHL 280
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L L+L C+++ GL +L L+ L+ L++ WC +TD + L+ L L+ L
Sbjct: 281 TPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLN 340
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDD 243
+S C K+TD G+A+L L L L+L C +T L L+ L +L +L L++C L+D
Sbjct: 341 LSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDA 400
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN 301
G + L L+ LNL C I D GL +LT L L+ L+LS ++ GL HL+ L
Sbjct: 401 GLAHLTSLVALQHLNLSICKKITDVGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVA 460
Query: 302 LESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 348
L+ ++L+ ++D L L L +L+ LNL +TD GLA +LT
Sbjct: 461 LQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYCTNLTDAGLAHFKNLT 509
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 147/272 (54%), Gaps = 9/272 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL HL LQ LD + C ++D GL HL L+ L L+ + +T G+
Sbjct: 245 SKLTDAGLAHLTSLVTLQHLDLSKCYNLTDAGLTHLTPLAALQHLNLSYCSKLTDAGLAH 304
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L LDL C + GL +L L L+ LN+ +C +TD + L+ L L+ L
Sbjct: 305 LTSLVTLQHLDLTWCVNLTDVGLAHLTPLAALQHLNLSYCIKLTDVGLAHLTSLVALQHL 364
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++ C +T+ G+A+L L L L L C +T A L L++L +L +LNL+ C +++D
Sbjct: 365 DLTWCVNLTEVGLAHLTPLVTLQHLELSKCHNLTDAGLAHLTSLVALQHLNLSICKKITD 424
Query: 243 DGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLT 300
G + L L+ L+L C + D GL +LT L L+ L+L+ + +GL HL L
Sbjct: 425 VGLAHLTPLVALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLM 484
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
L+ +NLS+ T ++D L L++ SLNL
Sbjct: 485 ALQHLNLSYCTNLTDAGLAHFKNLTT--SLNL 514
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 31/231 (13%)
Query: 233 LNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVG 289
L L C L+D G + L L+ LNL C + D GL +LT L L+ L+LS +
Sbjct: 214 LYLQECHNLTDAGLSHLAPLVTLQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLSKCYNLT 273
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 347
+GL HL+ L L+ +NLS+ + ++D L L L +L+ L+L +TD GLA LT L
Sbjct: 274 DAGLTHLTPLAALQHLNLSYCSKLTDAGLAHLTSLVTLQHLDLTWCVNLTDVGLAHLTPL 333
Query: 348 TGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 405
L HL+L + ++TD G A+L + L+ L++ LT+ G+ H+ L +L L LS+
Sbjct: 334 AALQHLNLSYCIKLTDVGLAHLTSLVALQHLDLTWCVNLTEVGLAHLTPLVTLQHLELSK 393
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
NLTD AGL HL L L+ L L CK
Sbjct: 394 CHNLTD------------------------AGLAHLTSLVALQHLNLSICK 420
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 58 SLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLSG D +TD GL HL LQ LD C+ ++D GL HL+ L L L+
Sbjct: 435 ALQHLDLSGCDKLTDVGLAHLTTLVALQHLDLTCCVNLTDAGLVHLKPLMALQHLNLSYC 494
Query: 117 NAITAQGMKAFAGLINLVKLDLER 140
+T G+ F L + L L R
Sbjct: 495 TNLTDAGLAHFKNLTTSLNLKLSR 518
>gi|348688896|gb|EGZ28710.1| hypothetical protein PHYSODRAFT_322345 [Phytophthora sojae]
Length = 683
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 206/408 (50%), Gaps = 33/408 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD G+ L ++L SL+ + C Q++D G+ L L NL L F +T G+KA
Sbjct: 292 NLTDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKAL 351
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L++L+ LD+ C I G L L S N+ +C+ I D+ + + LT ++ L
Sbjct: 352 APLVDLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLN 411
Query: 187 -ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ C KVTD G+ + L+ LT L++ C ++DDG
Sbjct: 412 FMKCGKVTDKGLRSISKLRNLTSLDMVSCF-----------------------NVTDDGL 448
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLE 303
+ L L+SL L C GI D+G+ L+ L +L L+LS+ QVG+ L L L NL
Sbjct: 449 NELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLT 508
Query: 304 SINL-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RI 360
++NL I D + LAGL LK+LNL + R +TD + +T L + L+ ++
Sbjct: 509 NLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKL 568
Query: 361 TDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
TD+G L + L+S+++ LTDA + + LT L+L C LTD+ + +
Sbjct: 569 TDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGK 628
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+T L SLN+S IT AGL HL L NL ++ L C KVT I L
Sbjct: 629 VTSLTSLNLSECGEITDAGLAHLAALVNLTNINLWYCTKVTKTGIDHL 676
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 11/358 (3%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL S++LS S +TD G+ L NL+ L+F +++D GL+ L L +L +L
Sbjct: 305 TSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLVDLITLDIAG 364
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
IT G A NL +L C+ I +++ L K+ LN C +TD ++
Sbjct: 365 CYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLR 424
Query: 175 PLSGLTNLKSL-QISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
+S L NL SL +SC VTD G+ L GL +L L L GC + + +LS L SL
Sbjct: 425 SISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVI 484
Query: 233 LNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VG 289
L+L+ C Q+ + L NL +LNL C I DEG+ L GL LK L LS+ + +
Sbjct: 485 LDLSNCRQVGNKALLGLGELHNLTNLNLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLT 544
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL 347
+ ++ +T LESI L + ++D + LA L+ L+S++L + ++TD L+ S+
Sbjct: 545 DAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSKLTDACLSTFPSI 604
Query: 348 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
LT LDL +TD G A L +L SL + G +TDAG+ H+ L +LT +NL
Sbjct: 605 PKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSECGEITDAGLAHLAALVNLTNINL 662
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 208/442 (47%), Gaps = 54/442 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-- 139
NL+ ++ C ++D +E L + + S++ + +T +G+ A ++ L
Sbjct: 176 NLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLNLG 235
Query: 140 RCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK---VTD 194
C + V+ L KL L+++ C+ + D ++ L+ L +L +L + + +TD
Sbjct: 236 YCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNLTD 295
Query: 195 SGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSRLT 252
GI+ L G+ LT LNL C +T + SL AL +L +L N +++D+G + + L
Sbjct: 296 DGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAPLV 355
Query: 253 NLESLNLDSC-GIGDEG---LVNLTGL--CNL-KCLELSDT------------------- 286
+L +L++ C I D G L N L CNL C E+ DT
Sbjct: 356 DLITLDIAGCYNITDAGTSVLANFPNLSSCNLWYCSEIGDTTFEHMESLTKMRFLNFMKC 415
Query: 287 -QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
+V GLR +S L NL S+++ S ++D L +L GL LKSL L I D G+AA
Sbjct: 416 GKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNELVGLHRLKSLYLGGCSGIRDDGIAA 475
Query: 344 LTSLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+ L L LDL R + G L N NL + + D G+ ++ L L
Sbjct: 476 LSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNLNLMRC--NRIDDEGIAYLAGLKRLK 533
Query: 400 LLNLSQNCN-LTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK- 456
LNLS NC LTD I+ +T L S+ + +++T G+ +L L L+S+ L SC
Sbjct: 534 TLNLS-NCRLLTDAATTTIAQMTELESIVLWYCNKLTDTGVMNLASLTKLQSIDLASCSK 592
Query: 457 ------VTANDIKRLQSRDLPN 472
T I +L S DL N
Sbjct: 593 LTDACLSTFPSIPKLTSLDLGN 614
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 56/286 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR------------ 114
S++ D+ H++ + ++ L+F C +++D GL + L NLTSL
Sbjct: 391 SEIGDTTFEHMESLTKMRFLNFMKCGKVTDKGLRSISKLRNLTSLDMVSCFNVTDDGLNE 450
Query: 115 ------------------RNNAITA-----------------QGMKAFAG---LINLVKL 136
R++ I A G KA G L NL L
Sbjct: 451 LVGLHRLKSLYLGGCSGIRDDGIAALSQLKSLVILDLSNCRQVGNKALLGLGELHNLTNL 510
Query: 137 DLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 194
+L RC RI G+ L GL +L++LN+ C +TD+ ++ +T L+S+ + C+K+TD
Sbjct: 511 NLMRCNRIDDEGIAYLAGLKRLKTLNLSNCRLLTDAATTTIAQMTELESIVLWYCNKLTD 570
Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFSRLT 252
+G+ L L KL ++L C +T ACL + ++ L L+L N C L+D+G ++T
Sbjct: 571 TGVMNLASLTKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVT 630
Query: 253 NLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 296
+L SLNL CG I D GL +L L NL + L T+V +G+ HL
Sbjct: 631 SLTSLNLSECGEITDAGLAHLAALVNLTNINLWYCTKVTKTGIDHL 676
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAAL------------ 344
NL+ +NL+ + ++D S+ +LA + ++S+ L Q+TD G+ AL
Sbjct: 174 FPNLKEVNLTGCSNLTDESVEQLAQIPRMESIALKGCYQVTDKGIIALTESLSSSLTSLN 233
Query: 345 ----------------TSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEIC---GGGL 384
+L L +L L G +++ D G L K+L +L + G L
Sbjct: 234 LGYCKVVSDEAVSAIAANLPKLNYLSLRGCSQVGDIGIRELARLKHLTTLNLWYANQGNL 293
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKP 443
TD G+ + ++SLT LNLS LTD + + L L L +N +T GL+ L P
Sbjct: 294 TDDGISALAGVTSLTSLNLSNCSQLTDVGISSLGALVNLRHLEFANVGEVTDNGLKALAP 353
Query: 444 LKNLRSLTLESC 455
L +L +L + C
Sbjct: 354 LVDLITLDIAGC 365
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+ L S+DL S S +TD+ L L SLD C ++D G+ L +++LTSL+
Sbjct: 580 TKLQSIDLASCSKLTDACLSTFPSIPKLTSLDLGNCCLLTDEGMATLGKVTSLTSLNLSE 639
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
IT G+ A L+NL ++L CT++
Sbjct: 640 CGEITDAGLAHLAALVNLTNINLWYCTKV 668
>gi|168698219|ref|ZP_02730496.1| hypothetical protein GobsU_01767 [Gemmata obscuriglobus UQM 2246]
Length = 380
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 168/299 (56%), Gaps = 1/299 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD ++K L L +L S+ +S + VT++G+ L + LT L+L +T A L L+ L
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKELAPL 119
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L NL+ +++D G ++ + + NL +L+L I D GL +L + +L L+LSDT+
Sbjct: 120 KNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK 179
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V +GL+ L+ L L ++ L T ++D L++LA +L L L ++TD GL L L
Sbjct: 180 VTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPL 239
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+ L L +TD+G L KNL +L + G +TDAGVK + +LTLL+LS
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLS-GT 298
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
N+TD ++ ++ L L +S++ +T GL+ L LK L L L S K T IK Q
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQ 357
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 153/285 (53%), Gaps = 1/285 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T + +K L +L +DL + GL L L +L++ ITD+ +K L+
Sbjct: 60 VTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLH-DTGITDAGLKELAP 118
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL + +S +KVTD+G+ L ++ LT L+L +T A L SL + L L+L+
Sbjct: 119 LKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDT 178
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+++D G + + L L +L L + + D GL L NL L L +T+V +GL+ L+
Sbjct: 179 KVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAP 238
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L +L + L T ++D L++LA L +L +LNL ++TD G+ L LT LDL G
Sbjct: 239 LKSLSVLVLGETEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+TD+G L FKNL LE+ +TD G+K + L LT L L
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFL 343
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 140/254 (55%), Gaps = 1/254 (0%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+G VT L L L SL ++L+ +++ G + +L +L+L GI D GL
Sbjct: 56 QGHRVTDEELKELLPLKSLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDTGITDAGLKE 115
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L NL LS+T+V +GL+ L+ + NL +++L T I+D L+ L + L +L+L
Sbjct: 116 LAPLKNLTAFNLSNTKVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDL 175
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
++TD GL AL L LT+L L+ +TD+G L KNL L + +TDAG+K
Sbjct: 176 SDTKVTDAGLKALAPLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKE 235
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ L SL++L L + +TD L+ ++ L L +LN+ +++T AG++ L P +NL L
Sbjct: 236 LAPLKSLSVLVLGE-TEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLD 294
Query: 452 LESCKVTANDIKRL 465
L VT IK L
Sbjct: 295 LSGTNVTDAGIKEL 308
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 150/284 (52%), Gaps = 3/284 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL S+DLS + VT++GL L +L +L + I+D GL+ L L NLT+ + N
Sbjct: 73 SLTSIDLSHTGVTNAGLKVLVAFKSLTTLSLHDT-GITDAGLKELAPLKNLTAFNL-SNT 130
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+T G+K + NL L L + GL +L + L +L++ +TD+ +K L+
Sbjct: 131 KVTDTGLKELTAIRNLTALHLRKTEITDAGLKSLPPMKDLTTLDLSDTK-VTDAGLKALA 189
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L +L + ++VTD+G+ L + L +L L VT A L L+ L SL L L
Sbjct: 190 PLERLTNLYLYNTEVTDTGLKELAPSKNLAVLLLYNTKVTDAGLKELAPLKSLSVLVLGE 249
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+++D G ++ + L NL +LNL + D G+ L NL L+LS T V +G++ L+
Sbjct: 250 TEVTDAGLKELAPLKNLTALNLYGTKVTDAGVKELAPFQNLTLLDLSGTNVTDAGIKELA 309
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
NL + LS T ++D L++LA L L L L + + T G+
Sbjct: 310 RFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGI 353
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 18/240 (7%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
EL R LT + L R + D L P + D L ++DLS + VT
Sbjct: 137 LKELTAIRNLTALHL---RKTEITDAGLKSLPPMKD------------LTTLDLSDTKVT 181
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL L L +L + + +++D GL+ L NL L N +T G+K A L
Sbjct: 182 DAGLKALAPLERLTNL-YLYNTEVTDTGLKELAPSKNLAVL-LLYNTKVTDAGLKELAPL 239
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+L L L GL L L L +LN+ + +TD+ +K L+ NL L +S +
Sbjct: 240 KSLSVLVLGETEVTDAGLKELAPLKNLTALNL-YGTKVTDAGVKELAPFQNLTLLDLSGT 298
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
VTD+GI L + L L L VT L L++L L L L + + G ++F +
Sbjct: 299 NVTDAGIKELARFKNLAHLELSSTAVTDVGLKELASLKKLTKLFLISTKTTFAGIKEFQK 358
>gi|149175912|ref|ZP_01854530.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845359|gb|EDL59704.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 495
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 235/468 (50%), Gaps = 13/468 (2%)
Query: 3 PRDISQQIFNE----LVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSS 58
PRD + Q + ++++ T+ S D + + L + P V+D + V S+ +
Sbjct: 21 PRDKAIQAIRDAGGKVIFAPG-TDESTGNLGDKTVSMVMLNEIP-VDDSIL-VHVSKLTE 77
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+ S+ + G+++TD GL L+D LQSL + QISD G++ L + L L+
Sbjct: 78 VTSLWIIGTEITDQGLTLLRDLQGLQSL-YITNNQISDAGIQQLPQVK-LVELTLG-GTK 134
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +K F+ +L L++ + GL + KLE L + ITD M+ + G
Sbjct: 135 ITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ-ITDEGMQQIQG 193
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NLKSL ++ +++TDSG+ L+ L +L L L +T A L L L L L L+
Sbjct: 194 LKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERLTRLSKLILSET 253
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-S 297
++D + L L+ L LD + D+GL + +L+ L++S+ Q+ +GL +L
Sbjct: 254 DITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNNQITDAGLIYLLQ 313
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
SINLS I+D L L +L+L ++TD GL LTS+ L L L
Sbjct: 314 NGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLSLNN 373
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+I+D G L L+S+++ G +TD ++ IK S + +L L + LTD +
Sbjct: 374 CQISDQGVQTLMELPALKSIQLNGTDITDCSLEIIKTKSDMLVLYLD-DTKLTDAGFSQL 432
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
GLTGL L+++N+ +T A L+ + L L L+ V+ +++L
Sbjct: 433 QGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKL 480
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 3/304 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ DS + +S LT + SL I +++TD G+ L+ LQ L L + ++ A + L +
Sbjct: 64 VDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQQLPQV 123
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L L +++D+ + FS ++L +LN+ + D GL ++ L+ L L +TQ
Sbjct: 124 -KLVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLYLHETQ 182
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ G++ + GL NL+S+ L+ T I+D L L L L+ L L+ +IT GL L L
Sbjct: 183 ITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGLKKLERL 242
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L+ L L ITD+ YL+ L+ L + LTD G+ I D SL +L++S N
Sbjct: 243 TRLSKLILSETDITDADIKYLKELPALKRLYLDQTQLTDDGLSQIVDFPSLEMLDVSNN- 301
Query: 408 NLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+TD L L+ S+N+S ++IT AGL L +L L + +VT +K L
Sbjct: 302 QITDAGLIYLLQNGKQWSSINLSGNQITDAGLSILGKSHIELTLDLSNTEVTDAGLKYLT 361
Query: 467 SRDL 470
S ++
Sbjct: 362 SMNM 365
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L++ V S L H+S LT + S+ + T I+D L L L L+SL + QI+D G+
Sbjct: 59 LNEIPVDDSILVHVSKLTEVTSLWIIGTEITDQGLTLLRDLQGLQSLYITNNQISDAGIQ 118
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L + L L L G +ITD + N +L +L + ++D G++++ L L
Sbjct: 119 QLPQVK-LVELTLGGTKITDESLKHFSNSSDLNTLNVGKTAVSDRGLQYVSQFKKLERLY 177
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L + +TD+ ++ I GL L SL ++ + IT +GL L+ L L L L K+T +
Sbjct: 178 LHE-TQITDEGMQQIQGLKNLKSLMLNETEITDSGLTALRNLDQLEELFLNETKITGAGL 236
Query: 463 KRLQ 466
K+L+
Sbjct: 237 KKLE 240
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
+T+ ++ ++ AL+ L L Q +D ++ SL +D+S + +TD+GLI+L
Sbjct: 255 ITDADIKYLKELPALKRLYLDQTQLTDDGLSQIV--DFPSLEMLDVSNNQITDAGLIYLL 312
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
++ S++ + QI+D GL L G S++ N +T G+K + L L
Sbjct: 313 QNGKQWSSINLSGN-QITDAGLSIL-GKSHIELTLDLSNTEVTDAGLKYLTSMNMLFGLS 370
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L C G+ L L L+S+ + + ITD ++ + +++ L + +K+TD+G
Sbjct: 371 LNNCQISDQGVQTLMELPALKSIQLNGTD-ITDCSLEIIKTKSDMLVLYLDDTKLTDAGF 429
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
+ L+GL L +L+L VT A L + + LF LNL + +SD +K + N
Sbjct: 430 SQLQGLTGLQILSLNNTAVTDASLKFFNKMTKLFELNLKQTAVSDAAVQKLLKKIN 485
>gi|46447142|ref|YP_008507.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400783|emb|CAF24232.1| hypothetical protein pc1508 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 657
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 193/360 (53%), Gaps = 32/360 (8%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKW 164
+++ L+F RN +T + NL L LE C + GL +L L+ L+ L++
Sbjct: 309 NDIEELNFSRNAYLTDAHLLVLKNCKNLKALYLEGCKNLTDTGLAHLSPLVALQHLSLFD 368
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLD 222
C +TD+ + LS L NL+ L +S SK T++G+A+L L L LNL GC +T L
Sbjct: 369 CENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHLSPLAALQHLNLFGCENLTGDGLT 428
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 280
LS+L +L +L LN C+ L+D G + L L+ L+L+ C + D GL +LT L L+
Sbjct: 429 HLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQH 488
Query: 281 LELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT 337
L L + + +GL HLS L NL+ ++L+ ++D L L L +L+ LNL R++T
Sbjct: 489 LNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLT 548
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D GLA LT L L +LDLFG R LTDAG+ H+ L +
Sbjct: 549 DAGLAHLTPLVALQYLDLFGCR-----------------------NLTDAGLTHLTPLIA 585
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L L L NLTD+ L ++ L L L++S S +T+AGLRHL PL L+ L L C+
Sbjct: 586 LQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 200/398 (50%), Gaps = 35/398 (8%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSN 82
+L+ + + + L Q P + K+ +I + + ++ S + +TD+ L+ LK+C N
Sbjct: 277 ALKNYLEYTVVSTLLNQAPDLT-KFEKIINYFANDIEELNFSRNAYLTDAHLLVLKNCKN 335
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L++L C ++D GL HL L L LS +T G+ + L NL L+L
Sbjct: 336 LKALYLEGCKNLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSK 395
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ C +T + LS L L+ L ++ C +TD+G+A+
Sbjct: 396 HFTNAGLAHLSPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAH- 454
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNL 259
L+ L +L +L+LN C L+D G + L L+ LNL
Sbjct: 455 -----------------------LAPLVTLQHLDLNFCDNLTDTGLAHLTSLVTLQHLNL 491
Query: 260 DSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGS 316
C + D GLV+L+ L NL+ L+L+D + +GL HL+ L L+ +NL ++D
Sbjct: 492 GWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDAGLAHLTPLVALQHLNLRRCRKLTDAG 551
Query: 317 LRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNL 374
L L L +L+ L+L R +TD GL LT L L HL L +TD G A+L L
Sbjct: 552 LAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIALQHLYLGLCNNLTDRGLAHLTPLAVL 611
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+ L++ LT+AG++H+ L +L L+LS NLTD
Sbjct: 612 QRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCENLTD 649
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 164/311 (52%), Gaps = 9/311 (2%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL LQ L C ++D GL +L L NL L+ + T G+
Sbjct: 346 NLTDTGLAHLSPLVALQHLSLFDCENLTDAGLAYLSPLENLQHLNLSHSKHFTNAGLAHL 405
Query: 128 AGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L C + G GL +L L+ L+ L + +C +TD+ + L+ L L+ L
Sbjct: 406 SPLAALQHLNLFGCENLTGDGLTHLSSLVALQHLGLNFCRNLTDAGLAHLAPLVTLQHLD 465
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
++ C +TD+G+A+L L L LNL C +T A L LS L +L +L+LN C L+D
Sbjct: 466 LNFCDNLTDTGLAHLTSLVTLQHLNLGWCRNLTDAGLVHLSPLENLQHLDLNDCYNLTDA 525
Query: 244 GCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN 301
G + L L+ LNL C + D GL +LT L L+ L+L + + +GL HL+ L
Sbjct: 526 GLAHLTPLVALQHLNLRRCRKLTDAGLAHLTPLVALQYLDLFGCRNLTDAGLTHLTPLIA 585
Query: 302 LESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ + L ++D L L L+ L+ L+L +T+ GL L+ L L +LDL G
Sbjct: 586 LQHLYLGLCNNLTDRGLAHLTPLAVLQRLDLSFCSNLTNAGLRHLSPLVALKYLDLSGCE 645
Query: 360 -ITDSGAAYLR 369
+TD+G R
Sbjct: 646 NLTDAGWHIWR 656
>gi|46447199|ref|YP_008564.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400840|emb|CAF24289.1| hypothetical protein pc1565 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1143
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 225/433 (51%), Gaps = 36/433 (8%)
Query: 25 LEAFRDCALQDLCLGQYPGVND--KWMDVIASQ-GSSLLSVDLSG-SDVTDSGLIHLKDC 80
L+ + +CA + L Q + + +++++ +++ + S+D S + +TD+ L+ LKDC
Sbjct: 719 LKNYLECAAVSVLLNQISELTEFEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDC 778
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
NL+ L + C +D GL HL L L L IT G+ + L+ L LDL
Sbjct: 779 KNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGG 838
Query: 141 CTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
C I GL L L+ L+ LN+ C C+TD + LS L L+ L + C K+TD G+A
Sbjct: 839 CYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLA 898
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLES 256
+L L L LNL C +T + L LS L SL +L+L C +L+D G S L NL+
Sbjct: 899 HLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQY 958
Query: 257 LNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFT-GIS 313
LNL+ C + D GL +L+ L L+ L+L + ++ SGL HLS L NL+ +NL+ ++
Sbjct: 959 LNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLT 1018
Query: 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D L L+ L +L+ LNL+ +TD GLA L+ L L HL
Sbjct: 1019 DRGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHL------------------- 1059
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 431
NLRS + LT AG+ H+ L +L LNLS +L D L ++ L L L++S
Sbjct: 1060 NLRSCD----NLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 1115
Query: 432 RITSAGLRHLKPL 444
T +GL H K L
Sbjct: 1116 YFTISGLAHFKAL 1128
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 203/389 (52%), Gaps = 36/389 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L A +DC L+ L L + D + + S +L +DL G +TDSGL HL
Sbjct: 767 LTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL-SPLVALQHLDLGGCYKITDSGLAHL 825
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD C +I+D GL +L L L L+ R +T G+ + L+ L LD
Sbjct: 826 SRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQYLD 885
Query: 138 LERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+RC +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L + C+K+TDS
Sbjct: 886 LDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDS 945
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNL 254
G+A+ LS L +L YLNLNRC L+D G S L L
Sbjct: 946 GLAH------------------------LSLLVNLQYLNLNRCNNLTDRGLAHLSHLVAL 981
Query: 255 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLS-FTG 311
+ L+L C I D GL +L+ L NL+ L L+ + GL HLS L L+ +NL+
Sbjct: 982 QHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHLNLNCCVC 1041
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
++D L L+ L +L+ LNL + +T GLA LT L L +L+L + + D+G +L
Sbjct: 1042 LTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLT 1101
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
+L+ L++ T +G+ H K L++
Sbjct: 1102 RLASLKHLDLSECPYFTISGLAHFKALAA 1130
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 187/370 (50%), Gaps = 43/370 (11%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGL 154
+GG+E SL F N +T + A NL L L C GL +L L
Sbjct: 753 EGGIE---------SLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPL 803
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L+ L++ C ITDS + LS L L+ L + C ++TDSG+ YL L L LNL
Sbjct: 804 VALQHLDLGGCYKITDSGLAHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNR 863
Query: 214 CP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLV 270
C +T L LS L +L YL+L+RC +++D G S L L+ LNL C + D GL
Sbjct: 864 CVCLTDDGLAYLSHLVALQYLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLA 923
Query: 271 NLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+L+ L +LK L+L D ++ SGL HLS L NL+ +NL+
Sbjct: 924 HLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLN--------------------- 962
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI--CGGGLTD 386
+TD GLA L+ L L HLDL +ITDSG A+L NL+ L + C LTD
Sbjct: 963 --RCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDN-LTD 1019
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLK 445
G+ H+ L +L LNL+ LTD L +S L L LN+ S +TSAGL HL PL
Sbjct: 1020 RGLAHLSRLVTLQHLNLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLI 1079
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 1080 ALQYLNLSYC 1089
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 171/320 (53%), Gaps = 34/320 (10%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+ TD+GL HL LQ LD C +I+D GL +L L L L+ +T G+
Sbjct: 226 NFTDAGLAHLSRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYL 285
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L+ L LDL C +I GL +L L+ L+ LN+ CN +TDS + LS LT+LK L
Sbjct: 286 SHLVALQHLDLGECYKITDSGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLD 345
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGC--------------------------PVTAA 219
+ C+K+TDSG+A+L L L LNL C +T++
Sbjct: 346 LRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSS 405
Query: 220 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN 277
L LS L +L YL+L+RC +++D G SRL L+ LNL+ C + D+GL L+ L
Sbjct: 406 GLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVA 465
Query: 278 LKCLELSDT-QVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DAR 334
L+ L L + S+GL HL+ L L+ +NLS+ ++D L L L+SLK L+L +
Sbjct: 466 LRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECP 525
Query: 335 QITDTGLAALTSL-TGLTHL 353
TD+GLA T+L T LTH
Sbjct: 526 YFTDSGLAHFTALATSLTHF 545
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 171/310 (55%), Gaps = 12/310 (3%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC- 214
+ESL+ +TD+ + L NLK L++ C TD+G+A+L L L L+L GC
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNL 272
+T + L LS L +L +LNLN C L+DDG S L L+ L+L C I D GL +L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 273 TGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 330
+ L L+ L L + SGL HLS LT+L+ ++L ++D L L+ L +L+ LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 331 LD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTD 386
L+ +TD GL+ L+ L L +LDL ++T SG A+L L+ L++ CG +TD
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGE-ITD 429
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
G+ H+ L +L LNL+ LTD L +S L L LN+ +TSAGL HL PL
Sbjct: 430 RGLAHLSRLVALQHLNLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLI 489
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 490 ALQYLNLSYC 499
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 8/229 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R N +T +G+
Sbjct: 915 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAH 974
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C +I GL +L L+ L+ LN+ C+ +TD + LS L L+ L
Sbjct: 975 LSHLVALQHLDLGECYKITDSGLAHLSLLVNLQYLNLNRCDNLTDRGLAHLSRLVTLQHL 1034
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 1035 NLNCCVCLTDDGLAYLSPLVALRHLNLRSCDNLTSAGLAHLTPLIALQYLNLSYCDSLND 1094
Query: 243 DGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLC---NLKCLELSDTQ 287
+G +RL +L+ L+L C GL + L NLK + D Q
Sbjct: 1095 NGLTHLTRLASLKHLDLSECPYFTISGLAHFKALAASLNLKIIRQKDFQ 1143
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 5/233 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TDSGL HL ++L+ LD C +++D GL HL L NL L+ R +T +G+
Sbjct: 325 NNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLNLNRCYNLTDRGLSH 384
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ L+ L LDL C ++ GL +L L+ L+ L++ C ITD + LS L L+ L
Sbjct: 385 LSHLVALQYLDLGLCKKLTSSGLAHLSPLVALQYLDLDRCGEITDRGLAHLSRLVALQHL 444
Query: 186 QISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSD 242
++C +TD G+AYL L L LNL C +T+A L L+ L +L YLNL+ C L+D
Sbjct: 445 NLNCCACLTDDGLAYLSPLVALRHLNLRCCGNLTSAGLAHLTPLIALQYLNLSYCDSLND 504
Query: 243 DGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+G +RL +L+ L+L C D GL + T L +QVGS L
Sbjct: 505 NGLTHLTRLASLKHLDLSECPYFTDSGLAHFTALATSLTHFYCWSQVGSEHLE 557
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 124/238 (52%), Gaps = 8/238 (3%)
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 293
N L+D NL+ L L C D GL +L+ L L+ L+L ++ SGL
Sbjct: 763 NNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSPLVALQHLDLGGCYKITDSGL 822
Query: 294 RHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 351
HLS L L+ ++L I+D L L+ L +L+ LNL+ +TD GLA L+ L L
Sbjct: 823 AHLSRLVALQHLDLGGCYEITDSGLTYLSRLVALQHLNLNRCVCLTDDGLAYLSHLVALQ 882
Query: 352 HLDLFGA-RITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+LDL +ITD G A+L + L+ L + C LTD+G+ H+ L+SL L+L L
Sbjct: 883 YLDLDRCWKITDRGLAHLSSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKL 942
Query: 410 TDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
TD L +S L L LN++ + +T GL HL L L+ L L C K+T + + L
Sbjct: 943 TDSGLAHLSLLVNLQYLNLNRCNNLTDRGLAHLSHLVALQHLDLGECYKITDSGLAHL 1000
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 7/210 (3%)
Query: 254 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FT 310
+ESL+ ++ + D L+ L NLK L L + + +GL HLS L L+ ++L
Sbjct: 191 IESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHLSRLVALQHLDLGGCY 250
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 368
I+D L L+ L +L+ LNL+ +TD GLA L+ L L HLDL +ITDSG A+L
Sbjct: 251 KITDSGLTYLSRLVALQHLNLNCCVCLTDDGLAYLSHLVALQHLDLGECYKITDSGLAHL 310
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ L+ L + C LTD+G+ H+ L+SL L+L LTD L +S L L LN
Sbjct: 311 SSLLALQHLNLGCCNNLTDSGLAHLSHLTSLKHLDLRDCAKLTDSGLAHLSLLVNLQYLN 370
Query: 428 VSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
++ +T GL HL L L+ L L CK
Sbjct: 371 LNRCYNLTDRGLSHLSHLVALQYLDLGLCK 400
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++T +GL HL LQ L+ ++C ++D GL HL L++L L T G+
Sbjct: 1063 SCDNLTSAGLAHLTPLIALQYLNLSYCDSLNDNGLTHLTRLASLKHLDLSECPYFTISGL 1122
Query: 125 KAFAGLINLVKLDLER 140
F L + L + R
Sbjct: 1123 AHFKALAASLNLKIIR 1138
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 368 LRNFKNLRSLEICGG----------GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
F NL S EI GG LTDA + +KD +L +L L + N TD L +
Sbjct: 176 FEEFLNLFSNEIEGGIESLDFSNNAYLTDAHLLALKDCKNLKVLRLHECRNFTDAGLAHL 235
Query: 418 SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
S L L L++ +IT +GL +L L L+ L L C +D
Sbjct: 236 SRLVALQHLDLGGCYKITDSGLTYLSRLVALQHLNLNCCVCLTDD 280
>gi|46447562|ref|YP_008927.1| hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401203|emb|CAF24652.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 12/321 (3%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +TD+ LK+C NL++L F C ++D GL HL+ L+ L L+ +T G+
Sbjct: 203 ENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCYHLTDVGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL +C GL +L L L+ L + C + D+ + L LT+L+
Sbjct: 263 AHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQ 322
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QL 240
L + C +TD+G+A+L L L LNL C +T L L L +L YLNL+ C +L
Sbjct: 323 HLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKL 382
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSG 298
+DDG + +TNL+ L+L C + D GL +LT L +L+ L+LS + + GL HL+
Sbjct: 383 TDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTP 442
Query: 299 LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF 356
LT L+ ++LS+ ++D L L L++L+ L+L + +TD GLA LT L L +LDL
Sbjct: 443 LTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLI 502
Query: 357 GAR-ITDSGAAYLRNFKNLRS 376
G + TD G A FKNL +
Sbjct: 503 GCKNFTDDGLA---RFKNLAA 520
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 176/316 (55%), Gaps = 10/316 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+++ LN +TD+ L NLK+L +C +TD+G+A+LK L L LNL GC
Sbjct: 195 EIKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGC 254
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T L L+ L L +L+L++C +DDG + LT L+ L L C + D GL +
Sbjct: 255 YHLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAH 314
Query: 272 LTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L +L+ L L + +GL HL+ LT L+ +NLS ++D L L L +L+ L
Sbjct: 315 LKPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYL 374
Query: 330 NLD-ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NLD R++TD GLA LT +T L HLDL +TD G A+L K+L+ L++ LTD
Sbjct: 375 NLDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTD 434
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLK 445
G+ H+ L++L L+LS NLTD L ++ LT L L++ + +T GL HL PL
Sbjct: 435 DGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLI 494
Query: 446 NLRSLTLESCKVTAND 461
L+ L L CK +D
Sbjct: 495 ALQYLDLIGCKNFTDD 510
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 168/333 (50%), Gaps = 10/333 (3%)
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+ L+F N +T NL L E C + GL +LK L L+ LN+ C
Sbjct: 196 IKKLNFSENTHLTDAHFSVLKECKNLKALHFEACQILTDAGLAHLKPLTALQHLNLSGCY 255
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+TD + L+ LT L+ L +S C TD G+A+L L L L L GC + A L L
Sbjct: 256 HLTDVGLAHLTFLTGLQHLDLSQCWHFTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHL 315
Query: 225 SALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 282
L SL +LNL C L+D G + LT L+ LNL C + D GL +L L L+ L
Sbjct: 316 KPLTSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLN 375
Query: 283 LSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDT 339
L + ++ GL HL+ +TNL+ ++LS ++D L L L SL+ L+L +TD
Sbjct: 376 LDNCRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDD 435
Query: 340 GLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
GL LT LT L HLDL + +TD G A+L L+ L++ G LTD G+ H+ L +
Sbjct: 436 GLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIA 495
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L+L N TD L L ++L + N
Sbjct: 496 LQYLDLIGCKNFTDDGLARFKNLAASLNLTIIN 528
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 135/247 (54%), Gaps = 9/247 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD GL HL + LQ L C + D GL HL+ L++L L+ R +T G+ A
Sbjct: 282 FTDDGLAHLTSLTALQYLALMGCKNLIDAGLAHLKPLTSLQHLNLRGCGYLTDAGLAHLA 341
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L L+L +C + GL +L+ L+ L+ LN+ C +TD + L+ +TNL+ L +
Sbjct: 342 PLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDNCRKLTDDGLAHLTPVTNLQHLDL 401
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD G+A+L L+ L L+L C +T L L+ L +L +L+L+ C L+DDG
Sbjct: 402 SQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDG 461
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL----SDTQVGSSGLRHLSGL 299
+ LT L+ L+L C + D+GL +LT L L+ L+L + T G + ++L+
Sbjct: 462 LAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAAS 521
Query: 300 TNLESIN 306
NL IN
Sbjct: 522 LNLTIIN 528
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 7/208 (3%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL ++L G +TD+GL HL + LQ L+ + C ++D GL HLR L L L+
Sbjct: 319 TSLQHLNLRGCGYLTDAGLAHLAPLTGLQHLNLSKCENLTDVGLAHLRLLVALQYLNLDN 378
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ + NL LDL +C + GL +L L L+ L++ C +TD +
Sbjct: 379 CRKLTDDGLAHLTPVTNLQHLDLSQCWHLTDIGLAHLTPLKSLQHLDLSRCENLTDDGLV 438
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L+ LT L+ L +S C +TD G+A+L L L L+L GC +T L L+ L +L Y
Sbjct: 439 HLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGCKNLTDDGLAHLTPLIALQY 498
Query: 233 LNLNRCQ-LSDDGCEKFSRLTNLESLNL 259
L+L C+ +DDG +F L SLNL
Sbjct: 499 LDLIGCKNFTDDGLARFKNLA--ASLNL 524
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLS ++TD GL+HL + LQ LD ++C ++D GL HL L+ L L
Sbjct: 420 SLQHLDLSRCENLTDDGLVHLTPLTALQHLDLSYCYNLTDDGLAHLTPLTTLQHLDLMGC 479
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN 166
+T G+ LI L LDL C GL K L SLN+ N
Sbjct: 480 KNLTDDGLAHLTPLIALQYLDLIGCKNFTDDGLARFKNLAA--SLNLTIIN 528
>gi|325110089|ref|YP_004271157.1| hypothetical protein Plabr_3538 [Planctomyces brasiliensis DSM
5305]
gi|324970357|gb|ADY61135.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 451
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 191/377 (50%), Gaps = 28/377 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
N+ ++DF ++ +D L HL G + L + T+ GM GL +L L LE+
Sbjct: 84 NVTAVDFR-SVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSLEKT 141
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GLV + + L +L ++ + ++D +K L GL L+ L + + ++D G+ L
Sbjct: 142 LIDDAGLVEIGRIPSLVALRLRQTD-VSDEGLKALGGLDKLRELDLRFTNISDEGLPAL- 199
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
A LDS+S + L+R ++SD+G + + + + L L+
Sbjct: 200 -----------------AELDSISTV------KLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
+ + L L L LE+ DTQ+ +G+ HL G++NL++++L + D +
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIG 296
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L SLK L++ I+D G A L +L L LDL I D G A+L KNL++LE+
Sbjct: 297 KLKSLKRLSIRDTVISDAGCAHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWF 356
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+T G +++L++L LNL ++ + D LE ++GLT L +LN+ + IT GL HL
Sbjct: 357 TRITPQGTAPLQNLTALRELNL-EDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHL 415
Query: 442 KPLKNLRSLTLESCKVT 458
LKNL + L + +V+
Sbjct: 416 HGLKNLEFVHLGNTQVS 432
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 185/359 (51%), Gaps = 5/359 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+QG+ + +VD + D L HL +Q L + F + G+ L+GL++L LS
Sbjct: 81 AQGN-VTAVDFRSVEAADDALTHLTGTPQVQEL-YLFGPGFTSAGMSDLQGLNDLRLLSL 138
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I G+ + +LV L L + GL L GL KL L++++ N I+D +
Sbjct: 139 EKT-LIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTN-ISDEGL 196
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L ++ ++++ +K++D G+ L + + L L +T L++L L L
Sbjct: 197 PALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTL 256
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++ Q+ D G ++NL++L+L +GDEG + L +LK L + DT + +G
Sbjct: 257 EMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGC 316
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
HL+ L NLE+++L+ T I D + L GL +LK+L L +IT G A L +LT L L
Sbjct: 317 AHLANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALREL 376
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+L RI DS L LR+L + +TD G+ H+ L +L ++L N ++D+
Sbjct: 377 NLEDTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLG-NTQVSDE 434
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 3/301 (0%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL+ + +L +L +SD GL+ L GL L L R N I+ +G+ A A
Sbjct: 143 IDDAGLVEIGRIPSLVALRLRQT-DVSDEGLKALGGLDKLRELDLRFTN-ISDEGLPALA 200
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L ++ + L+R G+ L + + L + N +T++ ++ L + L +L++
Sbjct: 201 ELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTN-LTNTALEALKERSELVTLEMD 259
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ D+GI +L+G+ L L+L V + + L SL L++ +SD GC
Sbjct: 260 DTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTVISDAGCAHL 319
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ L NLE+L+L+ IGDEG+ +L GL NLK LEL T++ G L LT L +NL
Sbjct: 320 ANLENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQNLTALRELNLE 379
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
T I D +L LAGL+ L++LNL ITD GL L L L + L +++D G L
Sbjct: 380 DTRIDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGNTQVSDEGTDAL 439
Query: 369 R 369
+
Sbjct: 440 K 440
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 150/297 (50%), Gaps = 6/297 (2%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ ++ + D + +L G ++ L L G T+A + L L L L+L + +
Sbjct: 84 NVTAVDFRSVEAADDALTHLTGTPQVQELYLFGPGFTSAGMSDLQGLNDLRLLSLEKTLI 143
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
D G + R+ +L +L L + DEGL L GL L+ L+L T + GL L+ L
Sbjct: 144 DDAGLVEIGRIPSLVALRLRQTDVSDEGLKALGGLDKLRELDLRFTNISDEGLPALAELD 203
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
++ ++ L T ISD ++ LA + +++ L L+ +T+T L AL + L L++ +I
Sbjct: 204 SISTVKLDRTKISDEGVKTLAAIPTIRGLGLNLTNLTNTALEALKERSELVTLEMDDTQI 263
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G +L NL++L + + D G + I L SL L++ ++ ++D ++ L
Sbjct: 264 DDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSI-RDTVISDAGCAHLANL 322
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L +L+++ + I G+ HL LKNL++L L ++T LQ NL + R
Sbjct: 323 ENLETLDLNETFIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQ-----NLTALR 374
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 35/275 (12%)
Query: 212 EGCPVT-AACLDSLSALGSLFYLN---------LNRCQLSDDGCEKFSRLTNLESLNLDS 261
E P +A +++L A G++ N + +DD + ++ L L
Sbjct: 57 ESTPADDSAAVEALEAAGAILKTNAQGNVTAVDFRSVEAADDALTHLTGTPQVQELYLFG 116
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
G G+ +L GL +L+ L L T + +GL + + +L ++ L T +SD L+ L
Sbjct: 117 PGFTSAGMSDLQGLNDLRLLSLEKTLIDDAGLVEIGRIPSLVALRLRQTDVSDEGLKALG 176
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR------ 375
GL L+ L+L I+D GL AL L ++ + L +I+D G L +R
Sbjct: 177 GLDKLRELDLRFTNISDEGLPALAELDSISTVKLDRTKISDEGVKTLAAIPTIRGLGLNL 236
Query: 376 ------------------SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+LE+ + DAG+ H++ +S+L L+L ++ ++ D+ E+I
Sbjct: 237 TNLTNTALEALKERSELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRD-DVGDEGFEII 295
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L L L++ ++ I+ AG HL L+NL +L L
Sbjct: 296 GKLKSLKRLSIRDTVISDAGCAHLANLENLETLDL 330
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 25/193 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL--------DFNFCI---------------Q 93
S L+++++ + + D+G++HL+ SNLQ+L D F I
Sbjct: 251 SELVTLEMDDTQIDDAGIVHLEGMSNLQNLSLRRDDVGDEGFEIIGKLKSLKRLSIRDTV 310
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD G HL L NL +L I +G+ GL NL L+L G L+
Sbjct: 311 ISDAGCAHLANLENLETLDLNET-FIGDEGVAHLGGLKNLKTLELWFTRITPQGTAPLQN 369
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L LN++ I DS ++PL+GLT L++L + + +TD G+ +L GL+ L ++L
Sbjct: 370 LTALRELNLEDTR-IDDSALEPLAGLTELRTLNLKLTPITDEGLVHLHGLKNLEFVHLGN 428
Query: 214 CPVTAACLDSLSA 226
V+ D+L A
Sbjct: 429 TQVSDEGTDALKA 441
>gi|290997932|ref|XP_002681535.1| predicted protein [Naegleria gruberi]
gi|284095159|gb|EFC48791.1| predicted protein [Naegleria gruberi]
Length = 448
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 213/418 (50%), Gaps = 8/418 (1%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+C + K++ S+ L S+D+ G+++ D G ++ + L SL+ + +I
Sbjct: 32 DICYSRIGAEGAKFI----SEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNN-RI 86
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G + + + LTSLS NN I +G K+ + + L LD+ G+ + +
Sbjct: 87 GDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEM 145
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+L+ L+I N I D K +S + L SL I +++ D G+ + +++LT L++
Sbjct: 146 KQLKLLDI-GGNEIGDEGSKYISEMKQLTSLNIGENRIGDEGVKSISEMKQLTSLSIYNN 204
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ S+S + L L+++ + D G + S + L SL++ GIGDEG ++
Sbjct: 205 RIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISE 264
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ LK L++ ++G G +++S + L S+N+ I ++ ++ + L SL +
Sbjct: 265 MKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNN 324
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QI G+ +++ + L L++ I D G ++ K L SL I G G+ D GVK I +
Sbjct: 325 QIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLNIGGNGIGDEGVKSISE 384
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ LT LN+S+N + + + IS + L SL++ + I G++ + +K L+SL++
Sbjct: 385 MKQLTSLNISKN-RIGAEGSKFISEMKQLTSLDICYNEIGGEGVKSISEMKQLKSLSI 441
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 157/292 (53%), Gaps = 1/292 (0%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G Y+ +++LT LN++ + S+S + L L
Sbjct: 44 KFISEMKQLTSLDIGGNEIGDEGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSL 103
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++N ++ +G + S + L SL++ GIGD+G+ ++ + LK L++ ++G G
Sbjct: 104 SINNNEIGVEGAKSISEMKQLTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGS 163
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++S + L S+N+ I D ++ ++ + L SL++ +I D G +++ + LT L
Sbjct: 164 KYISEMKQLTSLNIGENRIGDEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSL 223
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ G I D G + K L SL+I G G+ D G K I ++ L LL++ N + D+
Sbjct: 224 DISGNGIGDKGVKSISEMKQLTSLDISGNGIGDEGAKFISEMKQLKLLDIGGN-EIGDEG 282
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ IS + L SLN+ N+ I G++ + +K L SL + + ++ +K +
Sbjct: 283 SKYISEMKQLTSLNIYNNEIGVEGVKSISEMKQLTSLYIYNNQIGVEGVKSI 334
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 206/415 (49%), Gaps = 10/415 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+ + + D G + + L SLD + +I G + + + LTSL N I
Sbjct: 7 LDIGENQIGDEGAKSISEMKQLTSLDICYS-RIGAEGAKFISEMKQLTSLDIG-GNEIGD 64
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G K + + L L+++ G ++ + +L SL+I N I K +S +
Sbjct: 65 EGSKYISEMKQLTSLNIDNNRIGDEGAKSISEMKQLTSLSIN-NNEIGVEGAKSISEMKQ 123
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L SL IS + + D G+ ++ +++L LL++ G + +S + L LN+ ++
Sbjct: 124 LTSLDISGNGIGDKGVKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGENRIG 183
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D+G + S + L SL++ + IGDEG +++ + L L++S +G G++ +S +
Sbjct: 184 DEGVKSISEMKQLTSLSIYNNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQ 243
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L S+++S GI D + ++ + LK L++ +I D G ++ + LT L+++ I
Sbjct: 244 LTSLDISGNGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIG 303
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G + K L SL I + GVK I ++ L LN+ N + DK ++ IS +
Sbjct: 304 VEGVKSISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYN-EIGDKGVKFISEMK 362
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
L+SLN+ + I G++ + +K L SL + ++ A +++K+L S D+
Sbjct: 363 QLISLNIGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDI 417
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 158/318 (49%), Gaps = 28/318 (8%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ DK + I S+ L +D+ G+++ D G ++ + L SL+ +I D G++ +
Sbjct: 133 GIGDKGVKFI-SEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIGEN-RIGDEGVKSI 190
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSLS NN I +G K+ + + L LD+ G+ ++ + +L SL+I
Sbjct: 191 SEMKQLTSLSIY-NNRIGDEGAKSISEMKQLTSLDISGNGIGDKGVKSISEMKQLTSLDI 249
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D K +S + LK L I +++ D G Y+ +++LT LN+ + +
Sbjct: 250 SG-NGIGDEGAKFISEMKQLKLLDIGGNEIGDEGSKYISEMKQLTSLNIYNNEIGVEGVK 308
Query: 223 SLSA---LGSLFYLN-------------------LNRC--QLSDDGCEKFSRLTNLESLN 258
S+S L SL+ N LN C ++ D G + S + L SLN
Sbjct: 309 SISEMKQLTSLYIYNNQIGVEGVKSISEMKQLKSLNICYNEIGDKGVKFISEMKQLISLN 368
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ GIGDEG+ +++ + L L +S ++G+ G + +S + L S+++ + I ++
Sbjct: 369 IGGNGIGDEGVKSISEMKQLTSLNISKNRIGAEGSKFISEMKQLTSLDICYNEIGGEGVK 428
Query: 319 KLAGLSSLKSLNLDARQI 336
++ + LKSL++ +Q+
Sbjct: 429 SISEMKQLKSLSIHNQQM 446
>gi|46447129|ref|YP_008494.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400770|emb|CAF24219.1| hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 559
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 184/338 (54%), Gaps = 11/338 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLES 159
+ LSN + +L+F N +T A NL L L C I L +L L L+
Sbjct: 220 INHLSNEIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQH 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ C +TD+ + L+ LT L+ L +S C +TD+G+A+L L+ L LNL G +T
Sbjct: 280 LNLSKCRKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLT 339
Query: 218 AACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGL 275
A L L+ L +L YL+L+ C+ L+D G + LT L+ LNL + D GL L L
Sbjct: 340 DAGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFL 399
Query: 276 CNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 333
L+ L+LSD + + S+GL L+ LT L+ + LS+ ++D L L L++L+ LNL
Sbjct: 400 TALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSG 459
Query: 334 -RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVK 390
+TD GL LT LT L HL+L G +TD+G AYL L+ L + LT+AG+
Sbjct: 460 CFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLT 519
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
H+ L++L LNLS NLTD LE L ++L +
Sbjct: 520 HLASLTALQHLNLSYCDNLTDAGLERFKALAASLNLKI 557
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 173/310 (55%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ L NLK L +SC +TD +A+L L L LNL C
Sbjct: 226 EIEALNFSNNTYLTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVN 271
+T L L+ L +L +L+L+ C+ L+D G + L L+ LNL G + D GLV+
Sbjct: 286 RKLTDTGLVHLTPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVH 345
Query: 272 LTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSL 329
LT L L+ L+LS + + +GL HL+ LT L+ +NLS + ++D L +L L++L+ L
Sbjct: 346 LTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHL 405
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
+L D +T GL LTSLT L HL L + +TD+G +L L+ L + G LTD
Sbjct: 406 DLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTALQHLNLSGCFHLTD 465
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+ L++L LNL NLTD L ++ LT L LN+S +T AGL HL L
Sbjct: 466 AGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLT 525
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 526 ALQHLNLSYC 535
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 176/339 (51%), Gaps = 34/339 (10%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ A +DC L+ L L + D + + + ++L ++LS +TD+GL+HL
Sbjct: 238 LTDAHFSALKDCKNLKVLHLVSCQAITDDRLAHL-TPLTALQHLNLSKCRKLTDTGLVHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ LQ LD ++C ++D GL HL L L L+ R F L +
Sbjct: 297 TPLTALQHLDLSYCKNLTDAGLAHLTPLKALQHLNLR-----------GFGKLTD----- 340
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSG 196
GLV+L L L+ L++ WC +TD+ + L+ LT L+ L +S +TD+G
Sbjct: 341 --------AGLVHLTPLTALQYLDLSWCKNLTDAGLAHLTPLTGLQHLNLSGWYHLTDAG 392
Query: 197 IAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNL 254
+A L L L L+L C +T+A L+ L++L +L +L L+ C L+D G + LT L
Sbjct: 393 LARLIFLTALQHLDLSDCENLTSAGLERLTSLTALQHLGLSYCMNLTDAGLIHLTPLTAL 452
Query: 255 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TG 311
+ LNL C + D GLV+LT L L+ L L + + +GL +L+ LT L+ +NLS
Sbjct: 453 QHLNLSGCFHLTDAGLVHLTPLTALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKH 512
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 349
+++ L LA L++L+ LNL +TD GL +L
Sbjct: 513 LTEAGLTHLASLTALQHLNLSYCDNLTDAGLERFKALAA 551
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 9/182 (4%)
Query: 295 HLSGLT---NLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG 349
H S L NL+ ++L S I+D L L L++L+ LNL R++TDTGL LT LT
Sbjct: 242 HFSALKDCKNLKVLHLVSCQAITDDRLAHLTPLTALQHLNLSKCRKLTDTGLVHLTPLTA 301
Query: 350 LTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
L HLDL + +TD+G A+L K L+ L + G G LTDAG+ H+ L++L L+LS
Sbjct: 302 LQHLDLSYCKNLTDAGLAHLTPLKALQHLNLRGFGKLTDAGLVHLTPLTALQYLDLSWCK 361
Query: 408 NLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRL 465
NLTD L ++ LTGL LN+S +T AGL L L L+ L L C+ +T+ ++RL
Sbjct: 362 NLTDAGLAHLTPLTGLQHLNLSGWYHLTDAGLARLIFLTALQHLDLSDCENLTSAGLERL 421
Query: 466 QS 467
S
Sbjct: 422 TS 423
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++L G ++TD+GL +L + LQ L+ + C +++ GL HL L+ L L+
Sbjct: 475 TALQHLNLGGCENLTDAGLAYLTPLTALQHLNLSRCKHLTEAGLTHLASLTALQHLNLSY 534
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
+ +T G++ F L + L + R
Sbjct: 535 CDNLTDAGLERFKALAASLNLKIIR 559
>gi|325182005|emb|CCA16458.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 708
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 204/423 (48%), Gaps = 33/423 (7%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L+S++L+G +TD L L+ LQ+L + C I++ GL+HL GL L L R
Sbjct: 313 LISLNLTGCRLITDKTLYSLRHLFRLQNLHLSGCKWITEKGLQHLNGLFGLKRLYLARCV 372
Query: 118 AITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ Q + F NLV+LDL C+ L L ++ SL +K C+ IT + L
Sbjct: 373 NVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCSRITTKGLSHL 432
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L+ L + C V +G++ K +L +L L A L+ + +L L+L
Sbjct: 433 GSLSKLRRLDVRYCKHV--AGLS--KEWTQLDMLKLACTEFKEADASILATMKTLHELDL 488
Query: 236 NRCQLSDDGCEKF-SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
RC L GC F S L +L L + + DE L+ L
Sbjct: 489 -RCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLC--------------------- 526
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L+ +++S T ++D ++ L L L+LD IT+ L + L L L+
Sbjct: 527 --KSLEKLQMLDVSCTEVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLN 584
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
LF A +TD G L+ L+ L+IC GG+ GVK + L L LNLSQN + +++
Sbjct: 585 LFAASVTDEGVEALKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSV 644
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+ LT L LN+SN+ ITS+ L +L LK L SL++ + ++ I LQ +LP+L
Sbjct: 645 VHLEALTKLRFLNLSNTGITSSCLHNLFALKELESLSVYGVVLESSQIDELQE-NLPHLK 703
Query: 475 SFR 477
R
Sbjct: 704 VLR 706
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 31/325 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L + V+++ + +L+ +DLS ++D L + SL C
Sbjct: 363 LKRLYLARCVNVSNQAFRFFPTSFPNLVELDLSHCSISDIALHFTGRLREIHSLMLKGCS 422
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+ GL HL LS L L R + G+ ++++KL CT ++
Sbjct: 423 RITTKGLSHLGSLSKLRRLDVRYCKHVA--GLSKEWTQLDMLKLA---CTEFKEADASIL 477
Query: 153 GLMK-LESLNIKWC-----------------------NCITDSDMKPL-SGLTNLKSLQI 187
MK L L+++ C +TD + L L L+ L +
Sbjct: 478 ATMKTLHELDLRCCLVAKGCFSFVSHLNSLVRLCVAETALTDESLIMLCKSLEKLQMLDV 537
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
SC++VTDSG ++ L +L+ L+L+ +T L+ + L L LNL ++D+G E
Sbjct: 538 SCTEVTDSGTMEIEMLGELSELHLDTPGITNRSLERVGKLKKLARLNLFAASVTDEGVEA 597
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESIN 306
RL L+ L++ S G+G G+ L+ L L+ L LS + ++ S + HL LT L +N
Sbjct: 598 LKRLDKLQDLDICSGGVGHRGVKALSQLKRLRSLNLSQNKEIRSQSVVHLEALTKLRFLN 657
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNL 331
LS TGI+ L L L L+SL++
Sbjct: 658 LSNTGITSSCLHNLFALKELESLSV 682
>gi|384245058|gb|EIE18554.1| L domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 731
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 142/421 (33%), Positives = 216/421 (51%), Gaps = 44/421 (10%)
Query: 57 SSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+SL +DLSGS D+TD+GL+HL S L++L C+++S GL R L + LS R
Sbjct: 223 TSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLAVFRQLPAVADLSLRG 282
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMK 174
++ + A L L +LDL C R G L KGL L+ LN+K C I D+ ++
Sbjct: 283 CAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQELNLKGCYKIEDAGLQ 342
Query: 175 PLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
LS LT+L S+ + C ++T G+A L GL ++ +NL+GC ++ L+ L++L L L
Sbjct: 343 GLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKISS-LEPLASLSRLAAL 401
Query: 234 NLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
NL C L D SRL +L SL+L C + GL+ L+ L L L+L +
Sbjct: 402 NLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLTGLTALKLQHC----A 457
Query: 292 GLRHLSGLTNLESI------NLSFTGISDGS-LRKLAGLSSLKSLNLDA-RQIT--DTGL 341
G+R + L L + NLS +G+ + LA L+ L++L+LD R +T D GL
Sbjct: 458 GIRRSADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDGWRHVTFIDDGL 517
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
ALTSL G+ L+L G LTD G+ I ++SLT +
Sbjct: 518 MALTSLRGVASLNLQGCT-----------------------SLTDVGLAAIGHMTSLTNV 554
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
NL +T + +G+ L SL++ N S ++ AG + + +LR+L L++C +
Sbjct: 555 NLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCPALTD 614
Query: 461 D 461
D
Sbjct: 615 D 615
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 208/397 (52%), Gaps = 39/397 (9%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
T + L K S LQ L+ C +I D GL+ L L++LTS++ + ITAQG+ A +G
Sbjct: 312 TGAELREWKGLSLLQELNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSG 371
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L ++ ++L+ C +I L L L +L +LN++ C+ + DS + PLS L +L+SL +S
Sbjct: 372 LSRMMDVNLQGCRKI-SSLEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSG 430
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC----------PVT-----------------AACL 221
C+ +T G+ L L LT L L+ C P++ A +
Sbjct: 431 CTHLTGRGLLPLSSLTGLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGI 490
Query: 222 DSLSALGSLFYLNLN---RCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCN 277
SL+ L L L+L+ DDG + L + SLNL C + D GL + + +
Sbjct: 491 SSLATLTCLRALSLDGWRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTS 550
Query: 278 LKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL-DAR 334
L + L D Q+ G +G+ +L S++L + + +SD +A ++SL++LNL +
Sbjct: 551 LTNVNLQDCRQITGEGFAGWAGMAHLTSLSLQNASMVSDAGCCAIARITSLRTLNLKNCP 610
Query: 335 QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI 392
+TD LAALT L L HL L G +++D+ A+ +L+ LE LTDAG+ +
Sbjct: 611 ALTDDCLAALTPLERLCHLRLQGNQQLSDAALAHCARMPSLQHLETSNCWHLTDAGLTRL 670
Query: 393 KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNV 428
L++L L+LS +TD+ +E L+ LT LV+LNV
Sbjct: 671 TALTTLAHLDLSYCWQVTDRGVEHLVKSLTTLVTLNV 707
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 228/503 (45%), Gaps = 72/503 (14%)
Query: 27 AFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSLLSVDLSG-SDVTDSGL---------- 74
A+R ALQ L + V ND+ ++ +L SV L+G DVTD GL
Sbjct: 90 AYRFPALQQLDMSACRRVSNDELANL--RHLPNLTSVVLAGCEDVTDEGLLHLSHLSRLA 147
Query: 75 -IHLKDCSNL--------------QSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRR 115
++L +C + SL+ + C+ +S+ GL LR L L R
Sbjct: 148 SLNLSNCCKVTDGGLLALAALRQLGSLNLSGCVSLSERGLAAIAARLRRLHTLKLGGTSR 207
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
I+ + A AGL +L LDL I GL++L L +L +L + C ++ +
Sbjct: 208 VATISDASVAAIAGLTSLTHLDLSGSHDITDAGLLHLGSLSRLRTLVLWNCMRVSVDGLA 267
Query: 175 PLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY 232
L + L + C++++D+ + L++LT L+L C T A L L L
Sbjct: 268 VFRQLPAVADLSLRGCAQLSDALCGSVAHLEQLTRLDLRACERFTGAELREWKGLSLLQE 327
Query: 233 LNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGS 290
LNL C ++ D G + S LT+L S+N+ C I +GL L+GL + + L + S
Sbjct: 328 LNLKGCYKIEDAGLQGLSLLTSLTSINMQECWQITAQGLAALSGLSRMMDVNLQGCRKIS 387
Query: 291 SGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 348
S L L+ L+ L ++NL + G+ D SL L+ L SL+SL+L +T GL L+SLT
Sbjct: 388 S-LEPLASLSRLAALNLRNCDGLGDSSLGPLSRLVSLRSLDLSGCTHLTGRGLLPLSSLT 446
Query: 349 GLTHLDL---FGARIT------------------------DSGAAYLRNFKNLRSLEICG 381
GLT L L G R + +G + L LR+L + G
Sbjct: 447 GLTALKLQHCAGIRRSADLAPLSLLTALSTLNLSGCSQEEGAGISSLATLTCLRALSLDG 506
Query: 382 G---GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAG 437
D G+ + L + LNL +LTD L I +T L ++N+ + R IT G
Sbjct: 507 WRHVTFIDDGLMALTSLRGVASLNLQGCTSLTDVGLAAIGHMTSLTNVNLQDCRQITGEG 566
Query: 438 LRHLKPLKNLRSLTLESCKVTAN 460
+ +L SL+L++ + ++
Sbjct: 567 FAGWAGMAHLTSLSLQNASMVSD 589
>gi|46446776|ref|YP_008141.1| hypothetical protein pc1142 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400417|emb|CAF23866.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 590
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 192/345 (55%), Gaps = 10/345 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +T++ L+ LKDC N++ L F C ++D GL HL L+ L L +T G
Sbjct: 233 LENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDCENLTDAG 292
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L L LDL C + GLV+L L+ L+ L + C +T + + L+ LT L
Sbjct: 293 LAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAHLTSLTAL 352
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-Q 239
+ L + +C +TD+G+A+L L L L+L C +T A L L+ L +L +LNL C +
Sbjct: 353 QHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHLNLCCCRK 412
Query: 240 LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 297
L+D G + LT L+ L+L C + D GL +LT L L L LS+ ++ +GL HL+
Sbjct: 413 LTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTGAGLAHLT 472
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
L L+ +NLS ++D L LA L++L+ LNL ++ TD GLA LT LT L LDL
Sbjct: 473 PLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDL 532
Query: 356 FGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSL 398
G +TD+G +L L+ L++ G LTDAG++ K L++L
Sbjct: 533 IGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAAL 577
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 183/356 (51%), Gaps = 37/356 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +T++ + L N+K L C VTD+G+A+L L L L L C
Sbjct: 226 KIEALNFLENTHLTNAHLLALKDCKNVKVLYFKKCRDVTDAGLAHLTPLTALQHLGLSDC 285
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L+ L +L +L+L+ C L+D G + L L+ L L C + GL +
Sbjct: 286 ENLTDAGLAHLTTLTALQHLDLSGCWNLTDSGLVHLTPLVGLQHLGLSDCENLTVAGLAH 345
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LT L L+ L+L + + +GL HL+ LT L+ ++LS ++D L L L++L+ L
Sbjct: 346 LTSLTALQHLDLRNCYNLTDAGLAHLTPLTALQHLDLSCCYNLTDAGLAHLTPLTALQHL 405
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL R++TD GLA LT LT L HLDL + +TD+G A+L L L + LT
Sbjct: 406 NLCCCRKLTDAGLAHLTPLTALQHLDLSYCYNLTDAGLAHLTPLTALLHLNLSECWKLTG 465
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-------------- 432
AG+ H+ L +L LNLS+ NLTD L ++ LT L LN+S +
Sbjct: 466 AGLAHLTPLVALQHLNLSKCNNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLT 525
Query: 433 ------------ITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQS-RDLPNLV 474
+T AGL HL PL L+ L L CK +T ++R ++ LPNL
Sbjct: 526 ALQSLDLIGCNNLTDAGLVHLTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLT 581
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+++TD+GL+HL + LQ L+ ++C + +D GL HL L+ L SL N +T G+
Sbjct: 486 NNLTDAGLVHLAPLTALQHLNLSWCKKFTDAGLAHLTLLTALQSLDLIGCNNLTDAGLVH 545
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L L LDL C + GL K L L +L IK
Sbjct: 546 LTPLTALQYLDLIGCKNLTDAGLERFKTLAALPNLTIK 583
>gi|59802561|gb|AAX07517.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 402
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 157/290 (54%), Gaps = 2/290 (0%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R +LT L+ R +T G+K L L LDL R GL L+GL L + I
Sbjct: 115 RDFISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTW-I 172
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ +TD+ +K LSGL NL L + +KVT G+ LKGL LT L+L G T A L
Sbjct: 173 SAPHEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLA 232
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L L +L LNL+ +++D G ++ + L NL SL+L + D GL L GL NL L+
Sbjct: 233 ELKGLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLD 292
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L T V +GL+ L L+ L ++L T ++ L++L GL++L SL+L +TD GL
Sbjct: 293 LFGTSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLK 352
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L+ L LT LDLFG ++D+ L+ L SL + +TD G+K +
Sbjct: 353 ELSGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 162/288 (56%), Gaps = 2/288 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ L LN+++ +TD +K + L+ L L + +KVTD+G+ L+GL LT
Sbjct: 117 FISLTGLNLRFTK-VTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAP 175
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
VT A L LS L +L LNL +++ G ++ LTNL SL+L D L L
Sbjct: 176 HEVTDAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELK 235
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
GL NL L LSDT+V +GL+ L+GL NL S++L FT ++D L+KL GLS+L L+L
Sbjct: 236 GLTNLTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFG 295
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+TD GL L L+ LT LDL ++T +G L NL SL + +TDAG+K +
Sbjct: 296 TSVTDAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELS 355
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
L++LT L+L ++D L+ + L+ L SL + + +T G++ L
Sbjct: 356 GLANLTSLDLF-GTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 145/256 (56%), Gaps = 1/256 (0%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT LNL VT L + +L L L+L R +++D G ++ LTNL + +
Sbjct: 120 LTGLNLRFTKVTDLGLKEMRSLSKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEVT 179
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D GL L+GL NL L L T+V GL+ L GLTNL S++L T +D SL +L GL++
Sbjct: 180 DAGLKELSGLANLTELNLRFTKVTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTN 239
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L LNL ++TD GL LT L L LDL ++TD+G L+ NL L++ G +T
Sbjct: 240 LTELNLSDTKVTDAGLQELTGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT 299
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+K + LS LT+L+L + +T L+ ++GL L SL++ + +T AGL+ L L
Sbjct: 300 DAGLKELGRLSKLTVLDLG-STKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKELSGLA 358
Query: 446 NLRSLTLESCKVTAND 461
NL SL L V+ D
Sbjct: 359 NLTSLDLFGTPVSDTD 374
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 152/288 (52%), Gaps = 27/288 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + VTD+GL L+ +NL + + +++D GL+ L GL+NLT L+ R
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTW-ISAPHEVTDAGLKELSGLANLTELNLRFT 200
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K GL NL LDL + L LKGL L LN+ +TD+ ++ L
Sbjct: 201 K-VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTK-VTDAGLQEL 258
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL SL + +KVTD+G+ LKGL L +L+L G VT
Sbjct: 259 TGLANLASLDLRFTKVTDAGLQKLKGLSNLAVLDLFGTSVT------------------- 299
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
D G ++ RL+ L L+L S + GL LTGL NL L L T V +GL+ L
Sbjct: 300 -----DAGLKELGRLSKLTVLDLGSTKVTGTGLKELTGLANLTSLHLRLTAVTDAGLKEL 354
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
SGL NL S++L T +SD L++L LS L SL L +TD G+ L
Sbjct: 355 SGLANLTSLDLFGTPVSDTDLKELKKLSKLTSLRLGRTAVTDVGIKEL 402
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 135/261 (51%), Gaps = 9/261 (3%)
Query: 222 DSLSALGSLFYLNLNRCQLSD-----DGCEKFSR-LTNLESLNLDSCGIGDEGLVNLTGL 275
D A G+ L +R + + G SR +L LNL + D GL + L
Sbjct: 82 DGRGAPGTQGALEPHRIEPEEHEGDGPGAPGTSRDFISLTGLNLRFTKVTDLGLKEMRSL 141
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+L T+V +GL+ L GLTNL + + ++D L++L+GL++L LNL +
Sbjct: 142 SKLTVLDLGRTKVTDAGLQELRGLTNLTTWISAPHEVTDAGLKELSGLANLTELNLRFTK 201
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+T GL L LT LT LDLFG TD+ A L+ NL L + +TDAG++ + L
Sbjct: 202 VTYLGLKELKGLTNLTSLDLFGTSTTDASLAELKGLTNLTELNLSDTKVTDAGLQELTGL 261
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++L L+L + +TD L+ + GL+ L L++ + +T AGL+ L L L L L S
Sbjct: 262 ANLASLDL-RFTKVTDAGLQKLKGLSNLAVLDLFGTSVTDAGLKELGRLSKLTVLDLGST 320
Query: 456 KVTANDIKRLQSRDLPNLVSF 476
KVT +K L L NL S
Sbjct: 321 KVTGTGLKELTG--LANLTSL 339
>gi|442319589|ref|YP_007359610.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
gi|441487231|gb|AGC43926.1| hypothetical protein MYSTI_02610 [Myxococcus stipitatus DSM 14675]
Length = 600
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 214/431 (49%), Gaps = 8/431 (1%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
LC + GV + + +G+SL+++ SGS + D+ L L+D + ++L + +++
Sbjct: 97 LCF-EATGVPEPTLLAALVRGTSLVTLRASGSSLGDAHLGALRDFTAWEALHLD-GTRVT 154
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GL HL GL L+ + AI+ +G+ GL L ++ L + GL L
Sbjct: 155 DAGLPHLSGLRRLSVVRLE-ETAISDKGLAFLEGLTTLRRVGLAGTSVSAQGLRFLSAQA 213
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+LE L++ + TD + +L +L +S ++VTD+G+A L+ + LT L L
Sbjct: 214 ELEWLDL--SDTSTDDRVLAWVSGAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLARTG 271
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T L + AL +L L+L Q++D G + +LE+L L + GL +L GL
Sbjct: 272 LTDGGLAPIGALRALEALHLGETQVTDAGLLHLAESKSLEALVLTKTRLHGPGLQHLAGL 331
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L+ L L DT++ + +RHL GL L + LS T I+ L L LS+L+ L +
Sbjct: 332 TRLELLHLDDTRLDDAAMRHLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLA 391
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+T LA L LT LDL + A++ + LR L++ D + ++ L
Sbjct: 392 VTADALAVLQKTERLTRLDLSHTPVGPEALAHVPS--GLRELDLSRTAFNDEWLPSLRRL 449
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
S L L ++ LTD L + LT L +L++S + + +GL HL+ L +L L L +
Sbjct: 450 SRLQSLR-AERTLLTDLGLGQLGELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGAT 508
Query: 456 KVTANDIKRLQ 466
+ A+ LQ
Sbjct: 509 WLEAHYTPALQ 519
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 174/355 (49%), Gaps = 29/355 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L ++ LSG+ VTD+GL L+D +L L ++DGGL + L L +L
Sbjct: 235 GAHLHTLILSGTQVTDAGLARLRDMPHLTWLGLART-GLTDGGLAPIGALRALEALHLGE 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T G+ A +L L L + TR+HG GL +L GL +LE L++ + D+ M+
Sbjct: 294 TQ-VTDAGLLHLAESKSLEALVLTK-TRLHGPGLQHLAGLTRLELLHLD-DTRLDDAAMR 350
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL------------- 221
L GL L+ L++S + +T +G+A L L L L + G VTA L
Sbjct: 351 HLRGLVALRELELSRTLITGAGLASLDALSALERLGVSGLAVTADALAVLQKTERLTRLD 410
Query: 222 --------DSLSALGS-LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
++L+ + S L L+L+R +D+ RL+ L+SL + + D GL L
Sbjct: 411 LSHTPVGPEALAHVPSGLRELDLSRTAFNDEWLPSLRRLSRLQSLRAERTLLTDLGLGQL 470
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L L L LS T V SGL HL L +L ++L T + L GL+ L L+L
Sbjct: 471 GELTELAALHLSGTLVNGSGLAHLQRLPHLAHLDLGATWLEAHYTPALQGLTRLTWLSLA 530
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
++ D L L GL L L +TD+G LR+ +LR L++ G +TDA
Sbjct: 531 RGRLGDAALGHLPP--GLHTLYLTRTGVTDAGLDSLRSLPHLRQLDLRGTAVTDA 583
>gi|168705463|ref|ZP_02737740.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 362
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 4/307 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+D+K L+ LT L L +S + VTD+G+ +L L KLT LNL G +T A L+
Sbjct: 53 KTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKITDAGPTELA 112
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L L LNL+ Q++D G ++ +RL L +L+L G+ + GL +LT L ++ L L
Sbjct: 113 PLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRG 171
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
T++ GLR + + ++ ++LS T ++D L+ L + L+L ++T GL L
Sbjct: 172 TKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELA 230
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S L L L ++ D+G +L K L SL + G G+T GVK + L L +L L+
Sbjct: 231 SQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTG 290
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L+ +S L L L +S++ +T GL+ + LK L +L L KVT + L
Sbjct: 291 TM-VTGGGLKHLSTLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Query: 466 QSRDLPN 472
+ + LP
Sbjct: 350 R-KALPR 355
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 168/328 (51%), Gaps = 28/328 (8%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R +T +KA A L L LDL GL +L L KL +LN+ ITD+
Sbjct: 51 RGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK-ITDAGPT 109
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L L L +S ++VTD+G+ + L+ L L+L VT A L L+ L + L+
Sbjct: 110 ELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLS 168
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L +++D G + R+ ++ L+L + DEGL +L + L+LSDT+V S+GL+
Sbjct: 169 LRGTKITDGGLREI-RIMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLK 227
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L+ ++LS T + D L+ LA L L+SL L+ +T TG+ L L
Sbjct: 228 ELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPL------- 280
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ LR LE+ G +T G+KH+ L L +L LS + +TD+ L
Sbjct: 281 -----------------ERLRILELTGTMVTGGGLKHLSTLPRLAILRLS-DAAVTDEGL 322
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ I+ L L++L++ +++T AG+ L+
Sbjct: 323 KDIAHLKTLLALDLYRTKVTGAGVAELR 350
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 158/288 (54%), Gaps = 5/288 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +DLS + VTD+GL HL + L +L+ +I+D G L L+ LT L+ +
Sbjct: 67 TGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGT-KITDAGPTELAPLAVLTDLNLS-S 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+K A L LV LDL + GL +L L K+ SL+++ ITD ++ +
Sbjct: 125 TQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTKMRSLSLRGTK-ITDGGLREI 182
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ ++ L +S + +TD G+ L +++T L+L VT+ L L++ +L +L+L+
Sbjct: 183 R-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVTSNGLKELASQPTLKFLSLS 241
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R ++ D G + + L LESL L+ G+ G+ L L L+ LEL+ T V GL+HL
Sbjct: 242 RTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLERLRILELTGTMVTGGGLKHL 301
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
S L L + LS ++D L+ +A L +L +L+L ++T G+A L
Sbjct: 302 STLPRLAILRLSDAAVTDEGLKDIAHLKTLLALDLYRTKVTGAGVAEL 349
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 5/272 (1%)
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
+T + L G VT A L +L+ L L L+L+ ++D G + + LT L +LNL I
Sbjct: 45 VTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTKIT 104
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D G L L L L LS TQV +GL+ ++ L L +++LS TG+++ L L L+
Sbjct: 105 DAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-LTK 163
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
++SL+L +ITD GL + ++ ++ LDL G +TD G L F+ + L++ +T
Sbjct: 164 MRSLSLRGTKITDGGLREIRIMS-VSGLDLSGTALTDEGLKDLGLFEEITGLDLSDTKVT 222
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
G+K + +L L+LS+ + D L+ ++ L L SL ++ + +T G++ L PL+
Sbjct: 223 SNGLKELASQPTLKFLSLSR-TKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKELAPLE 281
Query: 446 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
LR L L VT +K L + LP L R
Sbjct: 282 RLRILELTGTMVTGGGLKHLST--LPRLAILR 311
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 3/238 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G + ++ L ++D + + LT L L+L S + D GL +L L L L L T+
Sbjct: 43 GVVTHVMLRGKTVTDADLKALAPLTGLTDLDLSSTPVTDAGLKHLAPLTKLTALNLGGTK 102
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ +G L+ L L +NLS T ++D L+++A L +L +L+L +T+ GL LT L
Sbjct: 103 ITDAGPTELAPLAVLTDLNLSSTQVTDAGLKEVARLRTLVALDLSHTGVTNAGLGHLT-L 161
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T + L L G +ITD G +R ++ L++ G LTD G+K + +T L+LS +
Sbjct: 162 TKMRSLSLRGTKITDGGLREIR-IMSVSGLDLSGTALTDEGLKDLGLFEEITGLDLS-DT 219
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L+ ++ L L++S +++ AGL+HL PLK L SL L VT +K L
Sbjct: 220 KVTSNGLKELASQPTLKFLSLSRTKVGDAGLKHLAPLKRLESLYLNGTGVTGTGVKEL 277
>gi|46447552|ref|YP_008917.1| hypothetical protein pc1918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401193|emb|CAF24642.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 552
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 180/310 (58%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + +C +TD G+A+L L L LNL GC
Sbjct: 194 EIEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGC 253
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L +L +L L+L+ C+ L D G LT L++L L SC + D GL +
Sbjct: 254 YKLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSH 313
Query: 272 LTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L L+ L+LS + +GL HL LT L++++LS+ ++D L L L++L++L
Sbjct: 314 LKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTL 373
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL +++ D GLA L LT L +L L + +TD G ++L++ L+ L + G LTD
Sbjct: 374 NLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTD 433
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLK 445
AG+ H+K L++L L L + NLT L ++ LT L +L++S ++ AGL HLKPL
Sbjct: 434 AGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLT 493
Query: 446 NLRSLTLESC 455
L++L L+ C
Sbjct: 494 ALQTLGLKWC 503
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 187/363 (51%), Gaps = 38/363 (10%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL 77
LT+ L ++C L+ L L + D + +A ++L ++L+G +TD+GL+HL
Sbjct: 206 LTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPL-TALQHLNLNGCYKLTDAGLVHL 264
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K + LQ+LD ++C + D GL HL+ L+ L +L+ +T +G+ L L LD
Sbjct: 265 KSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLD 324
Query: 138 LERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L C GL +L L L++L++ +C +TD + L LT L++L +S C K+ D+
Sbjct: 325 LSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNL 254
G+A+LK P+TA L YL LN C+ L+D G L L
Sbjct: 385 GLAHLK-------------PLTA-----------LQYLALNSCKNLTDRGLSHLKSLMAL 420
Query: 255 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TG 311
+ L L C + D GL +L L L+ L L Q + GL HL+ LT L++++LS+
Sbjct: 421 QHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKK 480
Query: 312 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR 369
+ D L L L++L++L L +TD GLA L L L HLDL + +T +G L
Sbjct: 481 LKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAG---LA 537
Query: 370 NFK 372
NFK
Sbjct: 538 NFK 540
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 185/344 (53%), Gaps = 16/344 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+ +TD+ L+ LK+C NL+ L C I+D GL HL L+ L L+ +T G+
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263
Query: 127 FAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L L LDL C + GLV+LK L L++L + C +TD + L LT L++L
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSD 242
+S C D+G+A+L L L L+L C +T L L +L +L LNL+ C +L D
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKD 383
Query: 243 DGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 300
G LT L+ L L+SC + D GL +L L L+ L LS + +GL HL LT
Sbjct: 384 AGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLT 443
Query: 301 NLESINL----SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
L+++ L + TG DG L LA L++L++L+L +++ D GLA L LT L L L
Sbjct: 444 ALQTLGLRRCQNLTG--DG-LAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGL 500
Query: 356 -FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
+ + +TD+G A+L+ L+ L++ LT AG+ + K L +
Sbjct: 501 KWCSNLTDAGLAHLKPLAALQHLDLSYCNNLTRAGLANFKILGA 544
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 176/321 (54%), Gaps = 12/321 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L+ L+++ C ITD + L+ LT L+ L ++ C K+TD+G+ +LK L
Sbjct: 209 AHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVHLKSLT 268
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L L+L C + A L L L +L L L C+ L+D G LT L++L+L C
Sbjct: 269 ALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTLDLSYC 328
Query: 263 -GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRK 319
D GL +L L L+ L+LS + + GL HL LT L+++NLS+ + D L
Sbjct: 329 KNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNLSYCKKLKDAGLAH 388
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSL 377
L L++L+ L L++ + +TD GL+ L SL L HL L G +TD+G A+L+ L++L
Sbjct: 389 LKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLTDAGLAHLKPLTALQTL 448
Query: 378 EI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRIT 434
+ C LT G+ H+ L++L L+LS L D L + LT L +L + S +T
Sbjct: 449 GLRRCQN-LTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLT 507
Query: 435 SAGLRHLKPLKNLRSLTLESC 455
AGL HLKPL L+ L L C
Sbjct: 508 DAGLAHLKPLAALQHLDLSYC 528
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 184/341 (53%), Gaps = 16/341 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L L L+L C
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIA 198
++ GLV+LK L L++L++ +C + D+ +KPL+ L NL SC +TD G++
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLA--LTSCKNLTDRGLS 312
Query: 199 YLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLES 256
+LK L L L+L C A L L L +L L+L+ C+ L+D G LT L++
Sbjct: 313 HLKSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQT 372
Query: 257 LNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLS-FTGIS 313
LNL C + D GL +L L L+ L L+ + + GL HL L L+ + LS ++
Sbjct: 373 LNLSYCKKLKDAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMALQHLVLSGCDNLT 432
Query: 314 DGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNF 371
D L L L++L++L L Q +T GLA L LT L LDL + ++ D+G A+L+
Sbjct: 433 DAGLAHLKPLTALQTLGLRRCQNLTGDGLAHLAPLTALQTLDLSYCKKLKDAGLAHLKPL 492
Query: 372 KNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L++ L+ C LTDAG+ H+K L++L L+LS NLT
Sbjct: 493 TALQTLGLKWC-SNLTDAGLAHLKPLAALQHLDLSYCNNLT 532
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 147/274 (53%), Gaps = 30/274 (10%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD+ + LK + L +L+LE C +T L L+ L +L +LNLN C +L+D G
Sbjct: 204 AHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGLVH 263
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 305
LT L++L+L C + D GLV+L L L+ L L+ + + GL HL LT L+++
Sbjct: 264 LKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQTL 323
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDS 363
+LS+ D L L L++L++L+L + +TD GL+ L SLT L L+L
Sbjct: 324 DLSYCKNFKDAGLAHLPPLTALQTLDLSYCKDLTDRGLSHLKSLTALQTLNL-------- 375
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+Y + K DAG+ H+K L++L L L+ NLTD+ L + L L
Sbjct: 376 --SYCKKLK-------------DAGLAHLKPLTALQYLALNSCKNLTDRGLSHLKSLMAL 420
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L +S +T AGL HLKPL L++L L C+
Sbjct: 421 QHLVLSGCDNLTDAGLAHLKPLTALQTLGLRRCQ 454
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 28/226 (12%)
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 293
N L+D NL+ L+L++C I D+GL +L L L+ L L+ ++ +GL
Sbjct: 202 NNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCYKLTDAGL 261
Query: 294 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 351
HL LT L++++LS+ + D L L L++L++L L + + +TD GL+ L SLT L
Sbjct: 262 VHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHLKSLTALQ 321
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LDL +Y +NFK DAG+ H+ L++L L+LS +LTD
Sbjct: 322 TLDL----------SYCKNFK-------------DAGLAHLPPLTALQTLDLSYCKDLTD 358
Query: 412 KTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
+ L + LT L +LN+S ++ AGL HLKPL L+ L L SCK
Sbjct: 359 RGLSHLKSLTALQTLNLSYCKKLKDAGLAHLKPLTALQYLALNSCK 404
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-A 358
+E++N S ++D L L +LK L+L+A Q ITD GLA L LT L HL+L G
Sbjct: 195 IEALNFSNNAHLTDAHLLTLKNCENLKVLHLEACQAITDDGLAHLAPLTALQHLNLNGCY 254
Query: 359 RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++TD+G +L++ L++L++ L DAG+ H+K L++L L L+ NLTD+ L +
Sbjct: 255 KLTDAGLVHLKSLTALQTLDLSYCKNLKDAGLVHLKPLTALQNLALTSCKNLTDRGLSHL 314
Query: 418 SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
LT L +L++S + AGL HL PL L++L L CK
Sbjct: 315 KSLTALQTLDLSYCKNFKDAGLAHLPPLTALQTLDLSYCK 354
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS + D+GL HLK + LQ+L +C ++D GL HL+ L+ L L
Sbjct: 468 TALQTLDLSYCKKLKDAGLAHLKPLTALQTLGLKWCSNLTDAGLAHLKPLAALQHLDLSY 527
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
N +T G+ F L + L++ R
Sbjct: 528 CNNLTRAGLANFKILGASLNLEIVR 552
>gi|290982526|ref|XP_002673981.1| predicted protein [Naegleria gruberi]
gi|284087568|gb|EFC41237.1| predicted protein [Naegleria gruberi]
Length = 363
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 185/358 (51%), Gaps = 9/358 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QIS G +++ + LTSL+ NN I +G K + + L L++ G +
Sbjct: 13 QISGKGAKYISEMKQLTSLNI-SNNRIGGKGAKYISEMKQLTSLNIFNNRISDEGAKYIS 71
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SL+I + N I K +S + L SL IS ++++D G Y+ +++LT LN+
Sbjct: 72 EMKQLISLDISY-NQIGAEGAKFISEMKQLTSLNISYNEISDEGAKYISEMKQLTSLNIS 130
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
++ +S + L LN++ Q+S G + S + L SLN+ I +G +
Sbjct: 131 YNDISEGA-KPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNISDNQISGKGAKYI 189
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L L++S+ Q+ G + LS + L S+N+S IS + ++ + L SLN+
Sbjct: 190 GEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKFMSEMKQLTSLNIS 249
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QI+D ++ + LT LD+F I+D GA Y+ K+L SL+I ++ HI
Sbjct: 250 NNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDISYNEIS-----HI 304
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ LT LN+S N + D+ + IS + L SL++S +RI G +++ +K+L SL
Sbjct: 305 SEMKQLTSLNISFN-QINDEGAKSISEMKQLTSLDMSYNRIGGEGAKYISEMKHLTSL 361
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 190/375 (50%), Gaps = 13/375 (3%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
+ LTSL+ NN I+ +G K + + L L++ RI G G + + +L SLNI
Sbjct: 1 MKQLTSLNVS-NNQISGKGAKYISEMKQLTSLNISN-NRIGGKGAKYISEMKQLTSLNI- 57
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I+D K +S + L SL IS +++ G ++ +++LT LN+ ++
Sbjct: 58 FNNRISDEGAKYISEMKQLISLDISYNQIGAEGAKFISEMKQLTSLNISYNEISDEGAKY 117
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN++ +S+ G + S + L SLN+ + I +G ++ + L L +
Sbjct: 118 ISEMKQLTSLNISYNDISE-GAKPISEMKQLTSLNVSNNQISGKGAKYISEMKQLTSLNI 176
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
SD Q+ G +++ + L S+++S ISD + L+ + L SLN+ QI+
Sbjct: 177 SDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISLNVSNNQISGKEAKF 236
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ +I+D A Y+ K L SL+I ++D G K+I ++ LT L++
Sbjct: 237 MSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGAKYISEMKHLTSLDI 296
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
S N + IS + L SLN+S ++I G + + +K L SL + ++ K
Sbjct: 297 SYN------EISHISEMKQLTSLNISFNQINDEGAKSISEMKQLTSLDMSYNRIGGEGAK 350
Query: 464 RLQSRDLPNLVSFRP 478
+ ++ +L S R
Sbjct: 351 YI--SEMKHLTSLRK 363
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 163/324 (50%), Gaps = 9/324 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + ++D G ++ + L SLD ++ QI G + + + LTSL+
Sbjct: 47 SEMKQLTSLNIFNNRISDEGAKYISEMKQLISLDISYN-QIGAEGAKFISEMKQLTSLNI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I+ +G K + + L L++ I G + + +L SLN+ N I+
Sbjct: 106 SY-NEISDEGAKYISEMKQLTSLNI-SYNDISEGAKPISEMKQLTSLNVS-NNQISGKGA 162
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS ++++ G Y+ +++LT L++ ++ LS + L L
Sbjct: 163 KYISEMKQLTSLNISDNQISGKGAKYIGEMKQLTSLDISNNQISDEGAKFLSEMKQLISL 222
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N++ Q+S + S + L SLN+ + I DE ++ + L L++ + + G
Sbjct: 223 NVSNNQISGKEAKFMSEMKQLTSLNISNNQISDERAKYISEMKQLTSLDIFNNLISDEGA 282
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++S + +L S+++S+ IS ++ + L SLN+ QI D G +++ + LT L
Sbjct: 283 KYISEMKHLTSLDISYNEISH-----ISEMKQLTSLNISFNQINDEGAKSISEMKQLTSL 337
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
D+ RI GA Y+ K+L SL
Sbjct: 338 DMSYNRIGGEGAKYISEMKHLTSL 361
>gi|87311782|ref|ZP_01093896.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
gi|87285456|gb|EAQ77376.1| hypothetical protein DSM3645_04405 [Blastopirellula marina DSM
3645]
Length = 427
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 101/351 (28%), Positives = 180/351 (51%), Gaps = 29/351 (8%)
Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L+ L KL+ + I + +TD + L + +L+ + + ++D+GI L L+ L+
Sbjct: 75 QLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSALKDLS 134
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
+L L ++ L+S+ L L YL+L ++D G E +++ N+E L L+ +GDE
Sbjct: 135 VLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDE 194
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GL +LTGL LK L + T V +G + ++ LTNLE++ + T ++ + LA L+ +K
Sbjct: 195 GLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVK 254
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT------------------------DS 363
+L L Q+ D G L + L +L L R+ D
Sbjct: 255 TLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDD 314
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G ++ FKNL L + +T G+ HIKDL+++ L L +TD +LE + G+ L
Sbjct: 315 GLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQ-GITDDSLENLVGMQKL 373
Query: 424 VSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+L++ N IT+ +++LK LK L+ +++ ++ + + L+ ++LP L
Sbjct: 374 QTLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAELK-KELPGL 423
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 169/339 (49%), Gaps = 30/339 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNNA------ 118
G+DVTD + +L +L+ DF+ ISD G+E L L +L+ L RR N
Sbjct: 92 GADVTDKTIDNLLQMKDLR--DFSAANTTISDAGIEKLSALKDLSVLQLRRTNISNKSLE 149
Query: 119 -----------------ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
IT GM+ A + N+ L LE GL +L GL KL+ LN
Sbjct: 150 SMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGAIVGDEGLAHLTGLSKLKFLN 209
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N +TD+ K ++ LTNL++L+ + + +T G+ YL L K+ L L V
Sbjct: 210 VRGTN-VTDAGFKSIANLTNLETLETNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGF 268
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
L + L L L + +++ G E + L+SL++ GD+GL+++ NL+ L
Sbjct: 269 VHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKL 328
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 340
L T+V GL H+ LTN++++ L + GI+D SL L G+ L++L+L D IT+
Sbjct: 329 NLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQTLSLKDNDMITNES 388
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ L L GL + + +I G A L+ K L LE+
Sbjct: 389 IKYLKQLKGLKKISITFTQIDSRGVAELK--KELPGLEV 425
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 158/299 (52%), Gaps = 1/299 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+D ++PLS L ++K L++ + VTD I L ++ L + ++ A ++ LSA
Sbjct: 70 SFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIEKLSA 129
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
L L L L R +S+ E +L L L+L I D G+ + + N++ L L
Sbjct: 130 LKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLRLEGA 189
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
VG GL HL+GL+ L+ +N+ T ++D + +A L++L++L + +T G+ L
Sbjct: 190 IVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGMEYLAP 249
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT + L+L A++ D G +L+ K L++L + + AG++++ + +L L++S+
Sbjct: 250 LTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRVAGAGMENLIGIDTLKSLDVSET 309
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
D L + L LN+ +++T GL H+K L N+++L L+ +T + ++ L
Sbjct: 310 P-FGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILDYQGITDDSLENL 367
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 3/287 (1%)
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+S + +D + L L+ + +L + G VT +D+L + L + +SD G E
Sbjct: 66 MSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTTISDAGIE 125
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
K S L +L L L I ++ L ++ L L+ L+L + +G+ ++ + N+E +
Sbjct: 126 KLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKMPNMEVLR 185
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L + D L L GLS LK LN+ +TD G ++ +LT L L+ G +T G
Sbjct: 186 LEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLETNGTALTTEGME 245
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
YL +++LE+ + D G H+K++ L L L Q + +E + G+ L SL
Sbjct: 246 YLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQ-TRVAGAGMENLIGIDTLKSL 304
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+VS + GL H+ KNL L L KVT + + + +DL N+
Sbjct: 305 DVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHI--KDLTNM 349
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 1/230 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G + +++ SD+ E S+L +++ L + + D+ + NL + +L+ ++T
Sbjct: 59 GVVTVADMSVASFSDEQLEPLSKLKHVKILKVYGADVTDKTIDNLLQMKDLRDFSAANTT 118
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ +G+ LS L +L + L T IS+ SL + L L+ L+L ITD G+ + +
Sbjct: 119 ISDAGIEKLSALKDLSVLQLRRTNISNKSLESMLQLPKLRYLDLRYDDITDAGMEIVAKM 178
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L L GA + D G A+L L+ L + G +TDAG K I +L++L L +
Sbjct: 179 PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVRGTNVTDAGFKSIANLTNLETLE-TNGT 237
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT + +E ++ LT + +L + +++ G HLK +K L++L L +V
Sbjct: 238 ALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTRV 287
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 29/274 (10%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+Y + D M+++A ++ + L G+ V D GL HL S L+ L+ ++D G
Sbjct: 163 RYDDITDAGMEIVAKM-PNMEVLRLEGAIVGDEGLAHLTGLSKLKFLNVR-GTNVTDAGF 220
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ + L+NL +L A+T +GM+ A L + L+L R G V+LK + +L++
Sbjct: 221 KSIANLTNLETLE-TNGTALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQN 279
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L ++ + + M+ L G+ LKSL +S + D G+ ++ + L LNL VT
Sbjct: 280 LMLRQTR-VAGAGMENLIGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTP- 337
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
DG LTN+++L LD GI D+ L NL G+ L+
Sbjct: 338 -----------------------DGLPHIKDLTNMKTLILDYQGITDDSLENLVGMQKLQ 374
Query: 280 CLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 312
L L D + + +++L L L+ I+++FT I
Sbjct: 375 TLSLKDNDMITNESIKYLKQLKGLKKISITFTQI 408
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 28/242 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++ G++VTD+G + + +NL++L+ N
Sbjct: 203 SKLKFLNVRGTNVTDAGFKSIANLTNLETLETN--------------------------G 236
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+T +GM+ A L + L+L R G V+LK + +L++L ++ + + M+ L
Sbjct: 237 TALTTEGMEYLAPLTKVKTLELMRAQVKDDGFVHLKEMKQLQNLMLRQTR-VAGAGMENL 295
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+ LKSL +S + D G+ ++ + L LNL VT L + L ++ L L+
Sbjct: 296 IGIDTLKSLDVSETPFGDDGLIHVGKFKNLEKLNLWFTKVTPDGLPHIKDLTNMKTLILD 355
Query: 237 RCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++DD E + L++L+L D+ I +E + L L LK + ++ TQ+ S G+
Sbjct: 356 YQGITDDSLENLVGMQKLQTLSLKDNDMITNESIKYLKQLKGLKKISITFTQIDSRGVAE 415
Query: 296 LS 297
L
Sbjct: 416 LK 417
>gi|383455271|ref|YP_005369260.1| hypothetical protein COCOR_03284 [Corallococcus coralloides DSM
2259]
gi|380733131|gb|AFE09133.1| leucine-rich repeat-containing protein [Corallococcus coralloides
DSM 2259]
Length = 614
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 206/424 (48%), Gaps = 27/424 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF--- 113
+S++S+ LS + + D L L + + LQ+L + +++D GL L+G+ +L L
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLD-GTRVTDAGLASLQGMPHLAVLRLDAT 187
Query: 114 ----------------RR----NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
RR +++ +G+ A L LDL T L +L G
Sbjct: 188 AVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG 247
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+L +L + + +T++ + L + L+ L ++ + V+D+G+A+L L+ L L+L
Sbjct: 248 -ERLRTLVMSGTH-VTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGS 305
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
VT A L L+ L +L L L++ ++ G + LT LE L+LD IG+ L +L
Sbjct: 306 TGVTDAGLIHLARLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQ 365
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
GL +L+ LELS T V SGL LSGL LES+ LS + D SL L L L L+L A
Sbjct: 366 GLQHLRDLELSRTAVTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSA 425
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I L L S L HLDL D A L+ F L+SL LTD G+ +
Sbjct: 426 TRIGPEALKQLGSRMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLS 485
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+L L L +S N ++ L + L LV L++ + +T G R L + L L+L
Sbjct: 486 ELRELESLQVSGN-PISGSGLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLA 544
Query: 454 SCKV 457
++
Sbjct: 545 GTRI 548
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 187/406 (46%), Gaps = 52/406 (12%)
Query: 47 KWMD---------VIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
+W+D V+AS G L ++ +SG+ VT++GL L+ L+ L +SD
Sbjct: 228 EWLDLSDTTVDDTVLASLPGERLRTLVMSGTHVTNAGLGALRRMPALRWLGLART-SVSD 286
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-----TRIHG-GLVN 150
GL HL L L +L A GLI+L +L R TRI G G+ +
Sbjct: 287 AGLAHLGALRMLDALHLGSTGVTDA-------GLIHLARLPALRVLVLSKTRIRGPGVRH 339
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL +LE L++ I ++ ++ L GL +L+ L++S + VT SG+ L GLQ L L
Sbjct: 340 LAGLTQLEVLHLD-DTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPALSGLQALESLG 398
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L G + A L +L L E+ SRL +L + IG E L
Sbjct: 399 LSGLALEDASLAALEPL------------------ERLSRL------DLSATRIGPEALK 434
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L+ L+LS T + L T L+S+ T ++D L +L+ L L+SL
Sbjct: 435 QLGSRMVLRHLDLSRTDFNDGWVATLQTFTQLQSLRAIRTILTDLGLGQLSELRELESLQ 494
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I+ +GL L L L LDL G +TD GA L F+ L L + G + D +
Sbjct: 495 VSGNPISGSGLVPLQKLPHLVKLDLGGTWMTDDGARLLAGFEKLSWLSLAGTRIGDESLV 554
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
H+ S LTL L +TD + + L L +++ + ++ A
Sbjct: 555 HLPG-SLLTLYLL--RTKVTDAGMPALHRLPLLREIDLRETAVSEA 597
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 2/303 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ D + L+ T L++L + ++VTD+G+A L+G+ L +L L+ V+ L L+
Sbjct: 139 TALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGMPHLAVLRLDATAVSDRGLALLA 198
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L +L L+L+ +S G + T LE L+L + D L +L G L+ L +S
Sbjct: 199 SLTTLRRLSLSGTSVSPRGLGLLAAQTELEWLDLSDTTVDDTVLASLPG-ERLRTLVMSG 257
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
T V ++GL L + L + L+ T +SD L L L L +L+L + +TD GL L
Sbjct: 258 THVTNAGLGALRRMPALRWLGLARTSVSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLA 317
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L L RI G +L L L + + +A ++H++ L L L LS+
Sbjct: 318 RLPALRVLVLSKTRIRGPGVRHLAGLTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSR 377
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T L +SGL L SL +S + A L L+PL+ L L L + ++ +K+L
Sbjct: 378 TA-VTGSGLPALSGLQALESLGLSGLALEDASLAALEPLERLSRLDLSATRIGPEALKQL 436
Query: 466 QSR 468
SR
Sbjct: 437 GSR 439
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 26/286 (9%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T++ SL +S + + D +A L +L L+L+G VT A L SL +
Sbjct: 129 TSVVSLHLSETALGDEHLAALANATRLQALHLDGTRVTDAGLASLQGM------------ 176
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+L L LD+ + D GL L L L+ L LS T V GL L+
Sbjct: 177 ------------PHLAVLRLDATAVSDRGLALLASLTTLRRLSLSGTSVSPRGLGLLAAQ 224
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T LE ++LS T + D L L G L++L + +T+ GL AL + L L L
Sbjct: 225 TELEWLDLSDTTVDDTVLASLPG-ERLRTLVMSGTHVTNAGLGALRRMPALRWLGLARTS 283
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
++D+G A+L + L +L + G+TDAG+ H+ L +L +L LS+ + + ++G
Sbjct: 284 VSDAGLAHLGALRMLDALHLGSTGVTDAGLIHLARLPALRVLVLSKT-RIRGPGVRHLAG 342
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LT L L++ ++ I +A LRHL+ L++LR L L VT + + L
Sbjct: 343 LTQLEVLHLDDTSIGNAALRHLQGLQHLRDLELSRTAVTGSGLPAL 388
>gi|46447141|ref|YP_008506.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400782|emb|CAF24231.1| hypothetical protein pc1507 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 623
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 191/374 (51%), Gaps = 35/374 (9%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK C NL+ L C ++D GL HL
Sbjct: 275 NAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHL----------------------- 311
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C R+ GL +L L+ L+ LN+ C+ TD+ + L+ L L
Sbjct: 312 --SPLVALQHLELSDCPRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTH 369
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L +S C T +G+A+L L L LNL C +T A L LS L +L +LNL C L+
Sbjct: 370 LNLSWCYNFTHAGLAHLTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLT 429
Query: 242 DDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 299
D G S L L+ L+L C + D GL +LT L L+ L+LS + +GL HLS L
Sbjct: 430 DAGLAHLSPLVALQHLDLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPL 489
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L+ ++LS + D L L L +LK LNL+ +TD GLA LT L L HLDL
Sbjct: 490 VALQHLDLSNCLSLKDAGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQ 549
Query: 358 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+T +G A+L + L+ L++ LTDAG+ H+ L +L LNL++ LTD L
Sbjct: 550 CPNLTGTGLAHLNSLMALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLA 609
Query: 416 LISGLTGLVSLNVS 429
++ L L L++S
Sbjct: 610 HLAPLVALEHLDLS 623
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 170/336 (50%), Gaps = 35/336 (10%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK L + C +TD+G+++L L L L L C
Sbjct: 266 EVEALNFSENAHLTDAHLLALKTCKNLKVLYLKKCCNLTDAGLSHLSPLVALQHLELSDC 325
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDG-----------------CEKFSR----- 250
P +T A L L++L +L YLNL+ C +D G C F+
Sbjct: 326 PRLTDAGLAHLTSLVALQYLNLSECSNFTDAGLAHLTPLLTLTHLNLSWCYNFTHAGLAH 385
Query: 251 ---LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 305
L L+ LNL C I D GL +L+ L L+ L L + + +GL HLS L L+ +
Sbjct: 386 LTPLVALQHLNLGHCRNITDAGLAHLSPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHL 445
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 362
+L + + ++D L L L +L+ L+L +TD GLA L+ L L HLDL + D
Sbjct: 446 DLGWCSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKD 505
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G A+L L+ L + LTDAG+ H+ L +L L+LSQ NLT L ++ L
Sbjct: 506 AGLAHLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLM 565
Query: 422 GLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L L++S +T AGL HL PL NLR L L C
Sbjct: 566 ALQHLDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCP 601
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 6/233 (2%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
ALQ L LG + D + + S +L ++L S++TD+GL HL LQ LD +
Sbjct: 391 ALQHLNLGHCRNITDAGLAHL-SPLVALQHLNLGWCSNLTDAGLAHLSPLVALQHLDLGW 449
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLV 149
C ++D GL HL L L L +T G+ + L+ L LDL C + GL
Sbjct: 450 CSNLTDAGLAHLTSLVALQHLDLSWCYYLTDAGLAHLSPLVALQHLDLSNCLSLKDAGLA 509
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+L L+ L+ LN+ C+ +TD+ + L+ L L+ L +S C +T +G+A+L L L
Sbjct: 510 HLTLLVTLKYLNLNKCHNLTDAGLAHLTPLVALQHLDLSQCPNLTGTGLAHLNSLMALQH 569
Query: 209 LNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNL 259
L++ C +T A L L+ L +L +LNL +C +L+D G + L LE L+L
Sbjct: 570 LDMSWCHNLTDAGLTHLTPLVNLRHLNLTKCPKLTDAGLAHLAPLVALEHLDL 622
>gi|290970571|ref|XP_002668179.1| predicted protein [Naegleria gruberi]
gi|284081412|gb|EFC35435.1| predicted protein [Naegleria gruberi]
Length = 592
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 202/400 (50%), Gaps = 4/400 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D G+ + + L SLD + + I G + + + LTSL N
Sbjct: 183 LTSLDISGNRIGDEGVKSISEMEQLISLDISTNV-IGGEGAKFISEMKQLTSLDIFYNR- 240
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G K + + L L++ G + + +L SLNI N I +K +SG
Sbjct: 241 IGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNIS-GNLIGVEGVKSISG 299
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS + + D G + +++LT L++ + + S+S + L +++
Sbjct: 300 MKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNN 359
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + S + L SL + + IG EG+ ++ + L L +S ++ G + +SG
Sbjct: 360 LIYDEGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISG 419
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+ + GI D ++ ++ + L SL++ +I D G+ +++ + L LD+
Sbjct: 420 MKQLTSLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTN 479
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I GA ++ K L SL+I G + D GVK I ++ LT LN+S N + + + IS
Sbjct: 480 VIGGEGAKFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGN-QIGVEGAKFIS 538
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L SL++S + I AG + + +K L SL + + +++
Sbjct: 539 EMKQLTSLDISKNEIGDAGAKFISEMKQLTSLDVYANRIS 578
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 213/421 (50%), Gaps = 14/421 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L SVD+SG+ + G + + L SL+ + I I G + + G+ +LTSL N
Sbjct: 135 LTSVDISGNRIGIEGAKSISEMKQLTSLNISNNI-IGVEGAKSISGMKHLTSLDI-SGNR 192
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
I +G+K+ + + L+ LD+ T + G G + + +L SL+I + N I K +
Sbjct: 193 IGDEGVKSISEMEQLISLDI--STNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLI 249
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L SL IS +++ G + +++LT LN+ G + + S+S + L LN++
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLNIS 309
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+ D+G + S + L SL++ + IGDEG+ +++ + L ++S+ + G + +
Sbjct: 310 GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSI 369
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SG+ L S+ +S I ++ ++ + L SLN+ +I G ++ + LT L ++
Sbjct: 370 SGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIY 429
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I D G + K L SL+I + D GVK I ++ L L++S N + + +
Sbjct: 430 KNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNV-IGGEGAKF 488
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
IS + L SL++S + I G++ + +K L SL + ++ +++K+L S D+
Sbjct: 489 ISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDI 548
Query: 471 P 471
Sbjct: 549 S 549
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 187/382 (48%), Gaps = 37/382 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+D+S + + G + + L SLD F +I G + + + LTSL+
Sbjct: 202 SEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDI-FYNRIGGEGAKLISEMKQLTSLNI 260
Query: 114 RRN-----------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
N N I +G+K+ +G+ L L+ I G L+
Sbjct: 261 STNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISGMKQLTSLN------ISGNLIG 314
Query: 151 LKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+G + +L SL+I + N I D +K +S + L S IS + + D G + G++
Sbjct: 315 DEGAKLISEMKQLTSLDI-YNNRIGDEGVKSISEMKQLTSFDISNNLIYDEGAKSISGMK 373
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
+LT L + + + +S + L LN+++ ++ +G + S + L SL + GI
Sbjct: 374 QLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSLTIYKNGI 433
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
GDEG+ +++ + L L++S+ ++G G++ +S + L S+++S I + ++ +
Sbjct: 434 GDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMK 493
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L SL++ I D G+ +++ + LT L++ G +I GA ++ K L SL+I +
Sbjct: 494 QLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKNEI 553
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
DAG K I ++ LT L++ N
Sbjct: 554 GDAGAKFISEMKQLTSLDVYAN 575
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 176/357 (49%), Gaps = 16/357 (4%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSG 178
K +G+ L +D I G + ++G + +L SLNI N I K +SG
Sbjct: 127 KFISGMKQLTSVD------ISGNRIGIEGAKSISEMKQLTSLNIS-NNIIGVEGAKSISG 179
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ +L SL IS +++ D G+ + +++L L++ + +S + L L++
Sbjct: 180 MKHLTSLDISGNRIGDEGVKSISEMEQLISLDISTNVIGGEGAKFISEMKQLTSLDIFYN 239
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ +G + S + L SLN+ + I EG ++ + L L +S +G G++ +SG
Sbjct: 240 RIGGEGAKLISEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNLIGVEGVKSISG 299
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S I D + ++ + L SL++ +I D G+ +++ + LT D+
Sbjct: 300 MKQLTSLNISGNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDISNN 359
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D GA + K L SL I + GVK I ++ LT LN+S+N + + + IS
Sbjct: 360 LIYDEGAKSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFIS 418
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
G+ L SL + + I G++ + +K L SL + + ++ +K + ++ L+S
Sbjct: 419 GMKQLTSLTIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSI--SEMEQLIS 473
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 169/333 (50%), Gaps = 3/333 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S +++ G + + L SL+ + + I G++ + G+ LTSL+
Sbjct: 250 SEMKQLTSLNISTNEIDVEGSKLISEMKQLTSLNISGNL-IGVEGVKSISGMKQLTSLNI 308
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G+ ++ + +L S +I N I D
Sbjct: 309 S-GNLIGDEGAKLISEMKQLTSLDIYNNRIGDEGVKSISEMKQLTSFDIS-NNLIYDEGA 366
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL IS +++ G+ ++ +++LT LN+ + +S + L L
Sbjct: 367 KSISGMKQLTSLTISNNRIGGEGVKFISEIKQLTSLNISKNEIDGEGAKFISGMKQLTSL 426
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ + + D+G + S + L SL++ + IGDEG+ +++ + L L++S +G G
Sbjct: 427 TIYKNGIGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDISTNVIGGEGA 486
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L S+++S I D ++ ++ + L SLN+ QI G ++ + LT L
Sbjct: 487 KFISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSL 546
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
D+ I D+GA ++ K L SL++ ++D
Sbjct: 547 DISKNEIGDAGAKFISEMKQLTSLDVYANRISD 579
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 3/210 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ +S + + G+ + + L SL+ + +I G + + G+ LTSL+ +N
Sbjct: 375 LTSLTISNNRIGGEGVKFISEIKQLTSLNISKN-EIDGEGAKFISGMKQLTSLTIYKN-G 432
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G+K+ + + L LD+ G+ ++ + +L SL+I N I K +S
Sbjct: 433 IGDEGVKSISEMKQLTSLDISNNRIGDEGVKSISEMEQLISLDIS-TNVIGGEGAKFISE 491
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS + + D G+ + +++LT LN+ G + +S + L L++++
Sbjct: 492 MKQLTSLDISGNLIYDEGVKSISEMKQLTSLNISGNQIGVEGAKFISEMKQLTSLDISKN 551
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
++ D G + S + L SL++ + I DE
Sbjct: 552 EIGDAGAKFISEMKQLTSLDVYANRISDEA 581
>gi|46446665|ref|YP_008030.1| hypothetical protein pc1031 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400306|emb|CAF23755.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 553
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 172/320 (53%), Gaps = 9/320 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL HL + LQ LD ++C ++D GL HL L+ L L +T G+ A
Sbjct: 232 VTDAGLAHLTPLTALQRLDLSYCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLA 291
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L L +L L C + GL +L L L+ L++ +TD+ + L LT L+ L +
Sbjct: 292 PLKALQRLALTNCKNLTDAGLTHLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDL 351
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C +TD+GIA+LK L L L+L +T A L L+ L L YLNL+ C+ L+D G
Sbjct: 352 SLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAG 411
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 302
+ LT L+ LNL SC + D GLV+L L L+ L LSD + + +GL HL+ LT L
Sbjct: 412 LAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTAL 471
Query: 303 ESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGAR 359
+ +NLS ++D L L L +L L+L + TD GL LT LTGL +L L
Sbjct: 472 QHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYH 531
Query: 360 ITDSGAAYLRNFKNLRSLEI 379
+TD G A + +L+I
Sbjct: 532 LTDDGLARFKTLAVSHNLKI 551
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 176/313 (56%), Gaps = 10/313 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLE 212
L K+E+LN +TD+ + L NLK L C VTD+G+A+L L L L+L
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 213 GCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGL 269
C +T L L+ L +L +L+L+ C+ L+DDG + L L+ L L +C + D GL
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312
Query: 270 VNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 327
+LT L L+ L+LS ++ +GL HL LT L+ ++LS ++D + L L++L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372
Query: 328 SLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGL 384
L+L R +TD GLA LT L GL +L+L + +TD+G A+L L+ L + L
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKP 443
TDAG+ H+ L++L L LS NLTD L ++ LT L LN+SN R +T GL HLK
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492
Query: 444 LKNLRSLTLESCK 456
L L L L CK
Sbjct: 493 LVTLTHLDLSWCK 505
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 189/351 (53%), Gaps = 11/351 (3%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
L + +L+F N +T + A NL L ++C + GL +L L L+ L++
Sbjct: 193 LKKIETLNFSDNAYLTDAHLLALKDCENLKVLHCKKCWGVTDAGLAHLTPLTALQRLDLS 252
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
+C +TD + L+ LT L+ L +S C +TD G+A+L L+ L L L C +T A L
Sbjct: 253 YCENLTDDGLAHLTPLTALQHLDLSYCENLTDDGLAHLAPLKALQRLALTNCKNLTDAGL 312
Query: 222 DSLSALGSLFYLNLNR-CQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 279
L+ L +L +L+L++ +L+D G LT L+ L+L C + D G+ +L L L+
Sbjct: 313 THLTTLTALQHLDLSQYWKLTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQ 372
Query: 280 CLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 336
L+LS + + +GL HL+ L L+ +NLS ++D L LA L++L+ LNL + +
Sbjct: 373 HLDLSQYRNLTDAGLAHLTPLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNL 432
Query: 337 TDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD 394
TD GL L LT L HL L +TD+G A+L L+ L + LTD G+ H+K
Sbjct: 433 TDAGLVHLIPLTALQHLYLSDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKS 492
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPL 444
L +LT L+LS N TD+ L ++ LTGL L +S +T GL K L
Sbjct: 493 LVTLTHLDLSWCKNFTDEGLTHLTPLTGLQYLVLSLCYHLTDDGLARFKTL 543
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 8/222 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HLK + LQ LD + C ++D G+ HL+ L+ L L + +T G+
Sbjct: 332 LTDAGLAHLKPLTALQHLDLSLCYYLTDAGIAHLKPLTALQHLDLSQYRNLTDAGLAHLT 391
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L L+ LN+ C +TD+ + L LT L+ L +
Sbjct: 392 PLMGLQYLNLSACKNLTDAGLAHLAPLTALQHLNLSSCYNLTDAGLVHLIPLTALQHLYL 451
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S +TD+G+A+L L L LNL C +T L L +L +L +L+L+ C+ +D+G
Sbjct: 452 SDWENLTDTGLAHLAPLTALQHLNLSNCRKLTDDGLAHLKSLVTLTHLDLSWCKNFTDEG 511
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC---NLKCLE 282
+ LT L+ L L C + D+GL L NLK ++
Sbjct: 512 LTHLTPLTGLQYLVLSLCYHLTDDGLARFKTLAVSHNLKIIK 553
>gi|224007994|ref|XP_002292956.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
gi|220971082|gb|EED89417.1| hypothetical protein THAPSDRAFT_16210 [Thalassiosira pseudonana
CCMP1335]
Length = 301
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHL 296
+ D+ F L LE LNLDSC +GD + +L + N+ L+L+D + GL +
Sbjct: 83 VQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDLADADISDFGLSKI 142
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ ++ ++L + ++ LR L+ ++ L+ LNLD+R+I D GL L L L LD+F
Sbjct: 143 AQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLKHLRDLP-LQSLDVF 201
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
R+TD G +R K L+SLE+CGGG+ D G H+ + +LT LNLSQN +T++
Sbjct: 202 SGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLNLSQNERITNRGAAS 261
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
++ L+ L +LN+SN+ +T LR+ L L+SL L C+
Sbjct: 262 LAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGCR 301
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 29/231 (12%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----------------------- 215
+ NLKSL++ S V D+ +A+ + L L LNL+ C
Sbjct: 70 INNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDL 129
Query: 216 ----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
++ L ++ + L+L C ++ G S +T LE LNLDS IGDEGL +
Sbjct: 130 ADADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLKH 189
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L L+ L++ +V G + + L+S+ L G+ D LA + +L SLNL
Sbjct: 190 LRDL-PLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLTSLNL 248
Query: 332 DARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ IT+ G A+L +L+ L L+L +T Y + L+SL + G
Sbjct: 249 SQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYG 299
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF------- 113
S+DL+ +D++D GL + ++ L +C ++ GL HL ++ L L+
Sbjct: 126 SLDLADADISDFGLSKIAQFKQMKRLSLFYC-NVTSAGLRHLSSMTKLEVLNLDSREIGD 184
Query: 114 ---RRNNAITAQGMKAFAG--------LINLVKL--DLERCTRIHG--GLVNLKGLMKLE 158
+ + Q + F+G I L+K LE C G G +L + L
Sbjct: 185 EGLKHLRDLPLQSLDVFSGRVTDLGYGCIRLIKTLQSLELCGGGVGDIGCTHLATIPNLT 244
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
SLN+ IT+ L+ L+NLK+L +S + VT + Y L KL L L GC
Sbjct: 245 SLNLSQNERITNRGAASLAALSNLKALNLSNTAVTPDALRYFSDLSKLKSLALYGC 300
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD---LSSLTLLNL 403
+ L L+L + + D+ A+ R+ L L + L D + H+ D + ++T L+L
Sbjct: 70 INNLKSLELCYSGVQDNHLAHFRSLPMLEELNLDSCHLGDWSIAHLADNNVIPNITSLDL 129
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ + +++D L I+ + L++ +TSAGLRHL + L L L+S ++ +K
Sbjct: 130 A-DADISDFGLSKIAQFKQMKRLSLFYCNVTSAGLRHLSSMTKLEVLNLDSREIGDEGLK 188
Query: 464 RLQSRDLP 471
L RDLP
Sbjct: 189 HL--RDLP 194
>gi|46446916|ref|YP_008281.1| hypothetical protein pc1282 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400557|emb|CAF24006.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1082
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 8/295 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL++L C ++D GL HL L L L + T G+
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L+L C + GL +L L+ L+ L++ +C+ TD+ + L+ L L+ L +
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S CS TD+G+A+L+ L LT LNL C T A L L+ L +L +LNLN C +L+D G
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAG 960
Query: 245 CEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
L L++L+L C D GL +LT L L+ L+LS ++ +GL HL+ L L
Sbjct: 961 LAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVAL 1020
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
+ ++LS+ ++D LR L L +L+ L L + T+ GLA S HL+L
Sbjct: 1021 QHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTEVGLAHFKSSVASLHLNL 1075
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 151/274 (55%), Gaps = 9/274 (3%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+ + LK + L L+L+ CP +T A L L++L +L +L+L+ C +D G
Sbjct: 781 LTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLR 840
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
L L LNL C + D GL +LT L LK L+LS + +GL HL+ L L+ ++L
Sbjct: 841 PLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDL 900
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSG 364
S + +D L L L +L LNL TD GLA LT L L HL+L ++TD+G
Sbjct: 901 SCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAG 960
Query: 365 AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
A+LR L++L++ TDAG+ H+ L L L+LS LTD L ++ L L
Sbjct: 961 LAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVAL 1020
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L++S + +T AGLRHL PL L+ L L SC+
Sbjct: 1021 QHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 25/310 (8%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L+ SN + L+F +N +T + A NL L L+ C + GL +L L+ L+
Sbjct: 763 LKYFSNEIEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQH 822
Query: 160 LNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP- 215
L++ +C+ TD + ++PL LT+L +L+ C +TD+G+A+L L L L+L C
Sbjct: 823 LDLSYCSNFTDAGLAHLRPLVALTHL-NLRW-CRNLTDAGLAHLTPLVALKYLDLSYCSN 880
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT 273
T A L L+ L +L +L+L+ C +D G L L LNL C D GL +LT
Sbjct: 881 FTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLT 940
Query: 274 GLCNLK------CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 326
L L+ C +L+D +GL HL L L++++LS+ + +D L L L L
Sbjct: 941 PLVALQHLNLNLCWKLTD-----AGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVL 995
Query: 327 KSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GG 383
+ L+L + +++TD GLA LT L L HLDL + +TD+G +L L+ L +
Sbjct: 996 QHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCEN 1055
Query: 384 LTDAGVKHIK 393
T+ G+ H K
Sbjct: 1056 FTEVGLAHFK 1065
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 148/275 (53%), Gaps = 9/275 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK L++L+++ C +TD+ + L+ L L+ L +S CS TD+G+A+L+ L
Sbjct: 784 AHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCSNFTDAGLAHLRPLV 843
Query: 205 KLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC 262
LT LNL C +T A L L+ L +L YL+L+ C +D G + L L+ L+L C
Sbjct: 844 ALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCC 903
Query: 263 G-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRK 319
D GL +L L L L L +GL HL+ L L+ +NL+ ++D L
Sbjct: 904 SNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAH 963
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
L L +L++L+L TD GLA LT L L HLDL ++TD+G A+L L+ L
Sbjct: 964 LRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHL 1023
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
++ LTDAG++H+ L +L L L N T+
Sbjct: 1024 DLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTE 1058
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 156/295 (52%), Gaps = 14/295 (4%)
Query: 13 ELVYSR--CLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
EL +S+ LT+ L A ++C L+ L L + P + D + + S +L +DLS S+
Sbjct: 772 ELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTS-LVTLQHLDLSYCSN 830
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+GL HL+ L L+ +C ++D GL HL L L L + T G+
Sbjct: 831 FTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHLT 890
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C+ GL +L+ L+ L LN++WC+ TD+ + L+ L L+ L +
Sbjct: 891 PLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLNL 950
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
+ C K+TD+G+A+L+ L L L+L C T A L L+ L L +L+L+ C +L+D G
Sbjct: 951 NLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAHLTPLVVLQHLDLSSCKKLTDAG 1010
Query: 245 CEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD----TQVGSSGLR 294
+ L L+ L+L C + D GL +LT L L+ L L T+VG + +
Sbjct: 1011 LAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCENFTEVGLAHFK 1065
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 7/209 (3%)
Query: 254 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 310
+E LN + + D L+ L NLK L L + + +GL HL+ L L+ ++LS+ +
Sbjct: 770 IEELNFSKNIFLTDAHLLALKNCKNLKALHLQECPNLTDAGLAHLTSLVTLQHLDLSYCS 829
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
+D L L L +L LNL R +TD GLA LT L L +LDL + + TD+G +L
Sbjct: 830 NFTDAGLAHLRPLVALTHLNLRWCRNLTDAGLAHLTPLVALKYLDLSYCSNFTDAGLTHL 889
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L+ L++ C TDAG+ H++ L +LT LNL N TD L ++ L L LN
Sbjct: 890 TPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWCHNFTDAGLAHLTPLVALQHLN 949
Query: 428 VS-NSRITSAGLRHLKPLKNLRSLTLESC 455
++ ++T AGL HL+PL L++L L C
Sbjct: 950 LNLCWKLTDAGLAHLRPLVALQNLDLSYC 978
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 113/210 (53%), Gaps = 5/210 (2%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS S+ TD+GL HL LQ LD + C +D GL HLR L LT L+ R
Sbjct: 869 ALKYLDLSYCSNFTDAGLTHLTPLVTLQHLDLSCCSNFTDAGLAHLRPLVALTHLNLRWC 928
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ T G+ L+ L L+L C ++ GL +L+ L+ L++L++ +C+ TD+ +
Sbjct: 929 HNFTDAGLAHLTPLVALQHLNLNLCWKLTDAGLAHLRPLVALQNLDLSYCSNFTDAGLAH 988
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYL 233
L+ L L+ L + SC K+TD+G+A+L L L L+L C +T A L L+ L +L L
Sbjct: 989 LTPLVVLQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDL 1048
Query: 234 NLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L C+ ++ G F LNL C
Sbjct: 1049 YLYSCENFTEVGLAHFKSSVASLHLNLKWC 1078
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 59 LLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +DLS +TD+GL HL LQ LD ++C ++D GL HL L L L
Sbjct: 995 LQHLDLSSCKKLTDAGLAHLTPLVALQHLDLSWCNHLTDAGLRHLTPLLALQDLYLYSCE 1054
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH 145
T G+ F + + L+L+ C R
Sbjct: 1055 NFTEVGLAHFKSSVASLHLNLKWCKRFQ 1082
>gi|46445833|ref|YP_007198.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399474|emb|CAF22923.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 337
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 161/297 (54%), Gaps = 22/297 (7%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLF 231
M+PL L + L++ C K+TD+G+A+LK L L LNL C +T L L+ L +L
Sbjct: 1 MRPLVAL---QHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQ 57
Query: 232 YLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLK------CLEL 283
+LNL+ C +L+ G + L LE+L+L CG + D GL +LT L L+ C +L
Sbjct: 58 HLNLSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKL 117
Query: 284 SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 341
+D GL HL L L+ ++L + ++D L L L +L+ LNL +TD GL
Sbjct: 118 TDV-----GLAHLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGL 172
Query: 342 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 399
A L L L HLDL G +TD+G A+L L+ L + G TDAG+ H+ L +L
Sbjct: 173 AHLRPLVALQHLDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQ 232
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
LNLS NLTD L + L L LN+S S++T AGL HL PL L L L C
Sbjct: 233 YLNLSDCSNLTDAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQC 289
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 183/356 (51%), Gaps = 33/356 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L +TD+GL HLK LQ L+ ++C ++D GL HL L+ L L+
Sbjct: 6 ALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSVCG 65
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T G+ L+ L LDL +C ++ GL +L L+ L+ L ++ C +TD + L
Sbjct: 66 KLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLAHL 125
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLN 234
L L+ L + CS +TD+G+A+L+ L L LNL+ C +T L L L +L +L+
Sbjct: 126 RPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQHLD 185
Query: 235 LNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSS 291
L+ C L+D G + L L+ LNL C D GL +LT L L+ L LSD + + +
Sbjct: 186 LDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLTDA 245
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
GL HL L L+ +NLS+ ++T GLA LT L L
Sbjct: 246 GLAHLKSLVALQHLNLSW-----------------------CSKLTGAGLAHLTPLVALE 282
Query: 352 HLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LDL ++TD+G A+L L+ +LE C LTDAG+ H K L++ LNL
Sbjct: 283 DLDLSQCGKLTDAGLAHLALLTALQYLNLERC-RKLTDAGLAHFKTLAASIYLNLQ 337
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 10/325 (3%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L+ L L+L C GL +LK L+ L+ LN+ WC+ +TD+ + L+ LT L+ L +S
Sbjct: 4 LVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLNLSV 63
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
C K+T +G+A+L L L L+L C +T A L L+ L +L +L + C +L+D G
Sbjct: 64 CGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCRKLTDVGLA 123
Query: 247 KFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 304
L L+ L+LD C + D GL +L L L+ L L + GL HL L L+
Sbjct: 124 HLRPLVALQHLDLDGCSNLTDAGLAHLRPLVALQHLNLKRCDNLTDIGLAHLRPLVALQH 183
Query: 305 INL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARIT 361
++L ++D L L L +L+ LNL + TD GLA LT L L +L+L + +T
Sbjct: 184 LDLDGCNNLTDAGLAHLTPLVALQHLNLRGCFKFTDAGLAHLTPLVALQYLNLSDCSNLT 243
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
D+G A+L++ L+ L + LT AG+ H+ L +L L+LSQ LTD L ++ L
Sbjct: 244 DAGLAHLKSLVALQHLNLSWCSKLTGAGLAHLTPLVALEDLDLSQCGKLTDAGLAHLALL 303
Query: 421 TGLVSLNVSNSR-ITSAGLRHLKPL 444
T L LN+ R +T AGL H K L
Sbjct: 304 TALQYLNLERCRKLTDAGLAHFKTL 328
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLN 402
+ L L HL+L ++TD+G A+L++ L+ L + LTD G+ H+ L++L LN
Sbjct: 1 MRPLVALQHLELGCCKLTDAGLAHLKSLVALQHLNLSWCDNLTDTGLAHLTPLTALQHLN 60
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
LS LT L ++ L L +L++S ++T AGL HL PL L+ L + C+
Sbjct: 61 LSVCGKLTGAGLAHLTPLVALENLDLSQCGKLTDAGLAHLTPLVALQHLGMRGCR 115
>gi|290979790|ref|XP_002672616.1| predicted protein [Naegleria gruberi]
gi|284086194|gb|EFC39872.1| predicted protein [Naegleria gruberi]
Length = 559
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 196/394 (49%), Gaps = 10/394 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
S+ L S+++SG+ + D G + +K + L D C++ G + + + LTS
Sbjct: 168 SEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVE----GAKSISEMKQLTS 223
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS +N I G K + + L L++ G + + +L SL+I N I
Sbjct: 224 LSIS-DNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS-NNLIDI 281
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +S + L SL+I +++ D G+ ++ +++LT L++ G + S+S + L
Sbjct: 282 EGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQL 341
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+L + ++ D+G S + L SLN+ IGDEG+ ++ + L L++ Q+G
Sbjct: 342 TFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIGGNQIGV 401
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G + +S + L + + I D ++ ++ + L SLN+ +I D G +++ + L
Sbjct: 402 GGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSISEMKQL 461
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L + I D G ++ K L L+I + D GVK I ++ LT LN+S N +
Sbjct: 462 TLLYISSNEIGDEGVKFISEMKQLTLLQIYSNRIGDEGVKSISEMKQLTSLNISGN-RIG 520
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D+ ++ IS + L SLN+SN+RI G++ L L
Sbjct: 521 DEGVKSISEMKQLTSLNISNNRIGDEGVKLLTSL 554
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 23/322 (7%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I +S + L SL IS +++ D G + +++LTLLN+ + S+
Sbjct: 156 CNEIGVEGATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSI 215
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
S + L L+++ ++ G + S + L LN+ + IGDEG ++ + L L++S
Sbjct: 216 SEMKQLTSLSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDIS 275
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ + G + +S + L S+ + + I D ++ ++ + L SL++ QI G ++
Sbjct: 276 NNLIDIEGAKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSI 335
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + LT L +F RI D GA + K L SL I + D GVK I ++ LT L++
Sbjct: 336 SEMKQLTFLQIFSNRIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDIG 395
Query: 405 QNC-----------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
N + D+ ++ IS + L SLN+S +RI G + +
Sbjct: 396 GNQIGVGGAKSISEMKQLTFLQIFSNRIGDEGVKFISEMKQLTSLNISGNRIGDEGAKSI 455
Query: 442 KPLKNLRSLTLESCKVTANDIK 463
+K L L + S ++ +K
Sbjct: 456 SEMKQLTLLYISSNEIGDEGVK 477
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 2/292 (0%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N+K+ D + K +S + L SL I+ +++ D G+ ++ +++LTLL++ +
Sbjct: 105 NVKFSVYSLD-NAKFISEMKQLTSLGIAENRIGDEGVKFISEMKQLTLLDICCNEIGVEG 163
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S+S + L LN++ ++ D+G + S + L LN+ I EG +++ + L
Sbjct: 164 ATSISEMKQLTSLNISGNRIGDEGAKLISEMKQLTLLNIADNRICVEGAKSISEMKQLTS 223
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L +SD ++G G + +S + L +N+S I D + ++ + L SL++ I G
Sbjct: 224 LSISDNEIGVVGAKLISEMNQLTLLNISNNEIGDEGAKFISEMKQLISLDISNNLIDIEG 283
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+++ + LT L+++ I D G ++ + L SL+I G + G K I ++ LT
Sbjct: 284 AKSISEMKQLTSLEIYYNEIGDEGVKFISKMEQLTSLDISGNQIGVGGAKSISEMKQLTF 343
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L + N + D+ IS + L SLN+ ++I G++ + ++ L SL +
Sbjct: 344 LQIFSN-RIGDEGANSISEMKQLTSLNIYYNQIGDEGVKFISEMEQLTSLDI 394
>gi|406830023|ref|ZP_11089617.1| hypothetical protein SpalD1_00247 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 181/342 (52%), Gaps = 26/342 (7%)
Query: 133 LVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
++ ++L++ R G V+ LK K+ SLN+ ITDS +K + T+L L ++ +K
Sbjct: 52 VIYVNLQQSERFGDGYVHALKPFTKMTSLNLNSTK-ITDSGLKGIRNFTSLTMLTLAFTK 110
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+TD G+ LK L+ LT L+L GC ++D G + L
Sbjct: 111 ITDVGLVELKDLKNLTRLDLGGC-----------------------TAITDVGLNEIKEL 147
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
T+L SL+L D GL L L L LEL TQ+ GL+ L LT+L + L T
Sbjct: 148 TSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLTLMQTK 207
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
ISD LR+L GL +L+ L+L +ITD GL + L + L LFG ITD G +
Sbjct: 208 ISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQSIGEL 267
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
NL L++ +T+ G+K I L +L L+L + +TD L+ I +T L ++N+ +
Sbjct: 268 NNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNINLGRT 327
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
IT+AGL+ L+ LKNL+SL + +VT+ + LQ ++LP L
Sbjct: 328 GITNAGLKELRNLKNLQSLDVSETEVTSEGVVALQ-KELPKL 368
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 28/336 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
G ++ V+L S+ G +H LK + + SL+ N +I+D GL+ +R ++LT L+
Sbjct: 49 GRPVIYVNLQQSERFGDGYVHALKPFTKMTSLNLN-STKITDSGLKGIRNFTSLTMLTL- 106
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
AF + ++ GLV LK L L L++ C ITD +
Sbjct: 107 -----------AFTKITDV-------------GLVELKDLKNLTRLDLGGCTAITDVGLN 142
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ LT+L SL +S ++ TD G+ L L+ L+ L L G +T L L L SL L
Sbjct: 143 EIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQITDDGLKELGTLTSLTRLT 202
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L + ++SD G + L NL+ L+L I DEGL + L + L L ++ G++
Sbjct: 203 LMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLFGDEITDEGMQ 262
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHL 353
+ L NL ++L T I++ L++++GL +LK L+L +ITD GL + ++T LT++
Sbjct: 263 SIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKEIGTMTQLTNI 322
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L IT++G LRN KNL+SL++ +T GV
Sbjct: 323 NLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGV 358
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 153/289 (52%), Gaps = 3/289 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ + S++L+ + +TDSGL +++ ++L L F +I+D GL L+ L NLT L
Sbjct: 75 TKMTSLNLNSTKITDSGLKGIRNFTSLTMLTLAFT-KITDVGLVELKDLKNLTRLDLGGC 133
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AIT G+ L +L L L GL L L L +L ++ ITD +K L
Sbjct: 134 TAITDVGLNEIKELTSLASLHLSYTQFTDVGLKELADLKCLSNLELRGTQ-ITDDGLKEL 192
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LT+L L + +K++D G+ LKGL+ L +L+L +T L + L + L L
Sbjct: 193 GTLTSLTRLTLMQTKISDLGLRELKGLRNLQILDLGLTEITDEGLKEIIDLKQIHSLYLF 252
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRH 295
+++D+G + L NL L+L I +EGL ++G K L+D ++ GL+
Sbjct: 253 GDEITDEGMQSIGELNNLTELDLIQTEITNEGLKEISGLKNLKKLHLLNDGKITDVGLKE 312
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ +T L +INL TGI++ L++L L +L+SL++ ++T G+ AL
Sbjct: 313 IGTMTQLTNINLGRTGITNAGLKELRNLKNLQSLDVSETEVTSEGVVAL 361
>gi|46447626|ref|YP_008991.1| hypothetical protein pc1992 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401267|emb|CAF24716.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 537
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 172/334 (51%), Gaps = 55/334 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LKDC NL+ L+ C ++D GL HL L+ L RR
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTAL-----RR------------- 293
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL C + GL NL L+ L+ L++ WC +TD+ + L+ L L L +
Sbjct: 294 -------LDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDL 346
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
S C K+TD+G+A+L L L LNL C ++ A L L +L +L +L+L+ CQ L+D G
Sbjct: 347 SICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAG 406
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 302
+RLT L+ L+L+ C + + GLV+L L L+ L+LS Q + + GL LT L
Sbjct: 407 LAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTAL 466
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ +NL+ +++TD GLA L+ L L HLDL+ ITD
Sbjct: 467 QYLNLN-----------------------HCQKLTDAGLAHLSPLGALQHLDLWCTNITD 503
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDL 395
+G A+L+ L+ L + LTDAG+ H+ L
Sbjct: 504 AGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 164/281 (58%), Gaps = 8/281 (2%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKL 206
L+ LK L+ LN+K C +TD+ + L+ LT L+ L +S C +TD+G+A L L L
Sbjct: 257 LLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIAL 316
Query: 207 TLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-G 263
L+L C +T A L L+ LG+L YL+L+ C +L+D G + L +L+ LNL C
Sbjct: 317 QHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQK 376
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
+ D GL +L L L+ L+LS Q + +GL HL+ LT L+ ++L+ +++ L L
Sbjct: 377 LSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLR 436
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI 379
L +L+ L+L +++T+ GL SLT L +L+L ++TD+G A+L L+ L++
Sbjct: 437 PLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDL 496
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+TDAG+ H+K L +L L LS+ NLTD L +S L
Sbjct: 497 WCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 146/265 (55%), Gaps = 6/265 (2%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S ++TD+GL HL + L+ LD +FC ++D GL +L L L L +T G+
Sbjct: 273 SCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGL 332
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L LDL C ++ GL +L L+ L+ LN+++C ++D+ + L L L+
Sbjct: 333 AHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQ 392
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+L L L L+L C +T A L L L +L +L+L+ CQ L
Sbjct: 393 HLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKL 452
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
++DG F LT L+ LNL+ C + D GL +L+ L L+ L+L T + +GL HL L
Sbjct: 453 TNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPL 512
Query: 300 TNLESINLSF-TGISDGSLRKLAGL 323
L+ + LS T ++D L L+ L
Sbjct: 513 GALQYLGLSRCTNLTDAGLAHLSPL 537
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 30/307 (9%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + SC +TD+G+A+L L L L+L C
Sbjct: 240 EIEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFC 299
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVN 271
+T A L +L+ L +L +L+L+ C+ L+D G + L L L+L CG + D GL +
Sbjct: 300 RNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAH 359
Query: 272 LTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
LT L +L+ L L Q + +GL HL L L+ ++LS+
Sbjct: 360 LTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSY--------------------- 398
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
+ +TD GLA L LT L HL L + +T++G +LR L+ L++ LT+ G
Sbjct: 399 --CQNLTDAGLAHLARLTALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDG 456
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ K L++L LNL+ LTD L +S L L L++ + IT AGL HLKPL L+
Sbjct: 457 LGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQ 516
Query: 449 SLTLESC 455
L L C
Sbjct: 517 YLGLSRC 523
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 143/261 (54%), Gaps = 10/261 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT 273
+T A L +L +L LNL C+ L+D G + LT L L+L C + D GL NLT
Sbjct: 252 LTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCRNLTDAGLANLT 311
Query: 274 GLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL 331
L L+ L+LS + + +GL HL+ L L ++LS G ++D L L L L+ LNL
Sbjct: 312 PLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHLTPLVDLQHLNL 371
Query: 332 DA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CGGGLTDA 387
++++D GLA L SL L HLDL + +TD+G A+L L+ L + C LT+A
Sbjct: 372 RYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLSLNRCKN-LTEA 430
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
G+ H++ L +L L+LS LT+ L L LT L LN+++ ++T AGL HL PL
Sbjct: 431 GLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNHCQKLTDAGLAHLSPLGA 490
Query: 447 LRSLTLESCKVTANDIKRLQS 467
L+ L L +T + L+
Sbjct: 491 LQHLDLWCTNITDAGLAHLKP 511
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 126/244 (51%), Gaps = 6/244 (2%)
Query: 13 ELVYSRCLTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVT 70
+L + R LT+ L ALQ L L + D + + G+ L +DLS +T
Sbjct: 295 DLSFCRNLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGA-LHYLDLSICGKLT 353
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D+GL HL +LQ L+ +C ++SD GL HLR L L L +T G+ A L
Sbjct: 354 DAGLAHLTPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARL 413
Query: 131 INLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS- 188
L L L RC + GLV+L+ L+ L+ L++ +C +T+ + LT L+ L ++
Sbjct: 414 TALQHLSLNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTNDGLGLFKSLTALQYLNLNH 473
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
C K+TD+G+A+L L L L+L +T A L L LG+L YL L+RC L+D G
Sbjct: 474 CQKLTDAGLAHLSPLGALQHLDLWCTNITDAGLAHLKPLGALQYLGLSRCTNLTDAGLAH 533
Query: 248 FSRL 251
S L
Sbjct: 534 LSPL 537
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 122/215 (56%), Gaps = 7/215 (3%)
Query: 254 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 310
+E LN D+ + D L+ L NLK L L + + +GL HL+ LT L ++LSF
Sbjct: 241 IEELNFSDNVYLTDAYLLALKDCKNLKMLNLKSCKNLTDAGLAHLTPLTALRRLDLSFCR 300
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
++D L L L +L+ L+L + +TD GLA LT L L +LDL ++TD+G A+L
Sbjct: 301 NLTDAGLANLTPLIALQHLDLSWCKNLTDAGLAHLTPLGALHYLDLSICGKLTDAGLAHL 360
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+L+ L + L+DAG+ H++ L +L L+LS NLTD L ++ LT L L+
Sbjct: 361 TPLVDLQHLNLRYCQKLSDAGLAHLRSLVTLQHLDLSYCQNLTDAGLAHLARLTALQHLS 420
Query: 428 VSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 461
++ + +T AGL HL+PL L+ L L C+ ND
Sbjct: 421 LNRCKNLTEAGLVHLRPLVTLQHLDLSYCQKLTND 455
>gi|149174696|ref|ZP_01853321.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
gi|148846390|gb|EDL60728.1| hypothetical protein PM8797T_26210 [Planctomyces maris DSM 8797]
Length = 460
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 179/349 (51%), Gaps = 5/349 (1%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D L+HL GL +L L N T + L L LE G+ NL L
Sbjct: 106 QDADLKHLAGLPSLERLILWGPN-FTDVSTEEIGKKNKLWFLSLESTAIGDEGVKNLSDL 164
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG 213
L+ L+++ N IT+ +K ++ LK L + +K + D G+ ++KG++ L +L ++
Sbjct: 165 QGLQVLSLRATN-ITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQA 223
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
VT + ++AL +L LN +SD+ E + NL SL LD I DEG+ L
Sbjct: 224 TQVTDEGMKDIAALPNLQRLNTWGRNISDETLE-LLKDKNLVSLELDDTEISDEGMKYLK 282
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ N++ L L VG+ G+ ++ + L++++L T ++D ++ L+GL+ L L+LD
Sbjct: 283 DMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDLTYLDLDE 342
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I D GL + L LT L L+G TD G + F L L + G +TDAG+K +
Sbjct: 343 SMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITDAGLKQLL 402
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L L LNLS+ ++D+ L+ ++ L L L +S +++T G++ +
Sbjct: 403 PLKKLEYLNLSK-TEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFE 450
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 154/315 (48%), Gaps = 29/315 (9%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
QG +LS L +++T+ L + L+ LD F +I+D G+ H++G+ NL L +
Sbjct: 165 QGLQVLS--LRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNLKVLKVQ 222
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+T +GMK A L NL +L+ W I+D ++
Sbjct: 223 ATQ-VTDEGMKDIAALPNLQRLN-------------------------TWGRNISDETLE 256
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L NL SL++ ++++D G+ YLK + + L+L V ++++ + L L+
Sbjct: 257 LLKD-KNLVSLELDDTEISDEGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLH 315
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L ++D+G + S LT+L L+LD IGD+GL + L L L L T+ GL+
Sbjct: 316 LRDTVVTDEGMKYLSGLTDLTYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLK 375
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+SG T L +NL T I+D L++L L L+ LNL +I+D GL L +L L L
Sbjct: 376 VISGFTELNRLNLEGTPITDAGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQ 435
Query: 355 LFGARITDSGAAYLR 369
L ++TD G
Sbjct: 436 LSFTQVTDDGVKQFE 450
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 170/356 (47%), Gaps = 50/356 (14%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++K N D+D+K L+GL +L+ L + TD + KL L+LE +
Sbjct: 98 LDLKGTNA-QDADLKHLAGLPSLERLILWGPNFTDVSTEEIGKKNKLWFLSLESTAIGDE 156
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNL 278
+ +LS L L L+L +++D + + L+ L+L + I DEG+ ++ G+ NL
Sbjct: 157 GVKNLSDLQGLQVLSLRATNITNDALKVVAAFPELKDLDLRFNKEINDEGMPHIKGMKNL 216
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
K L++ TQV G++ ++ L NL+ +N ISD +L L +L SL LD +I+D
Sbjct: 217 KVLKVQATQVTDEGMKDIAALPNLQRLNTWGRNISDETLELLKD-KNLVSLELDDTEISD 275
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+ L +T + L L + + G ++N K L++L + +TD G+K++ L+ L
Sbjct: 276 EGMKYLKDMTNMESLHLRRDFVGNPGIENIQNMKKLQTLHLRDTVVTDEGMKYLSGLTDL 335
Query: 399 TLLNLSQN-----------------------CNLTDKTLELISGLTGLVSLNVSNSRITS 435
T L+L ++ TD+ L++ISG T L LN+ + IT
Sbjct: 336 TYLDLDESMIGDQGLEQIKDLKKLTRLGLWGTETTDQGLKVISGFTELNRLNLEGTPITD 395
Query: 436 AGL------------------------RHLKPLKNLRSLTLESCKVTANDIKRLQS 467
AGL + L LKNL+ L L +VT + +K+ ++
Sbjct: 396 AGLKQLLPLKKLEYLNLSKTEISDEGLKTLAALKNLKELQLSFTQVTDDGVKQFEA 451
>gi|168701031|ref|ZP_02733308.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 389
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 144/289 (49%), Gaps = 23/289 (7%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD+G+ L LT LNL VT A L ++ L LN++ Q++D+G + + LT
Sbjct: 55 TDAGLKELSLFAGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLT 114
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L L LD + GL +L L L+ L L V +GLR L G+ L ++L T +
Sbjct: 115 ELTDLVLDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSV 174
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D L+++A LS LK+L L +T GL L LT L L L G RIT G + L K
Sbjct: 175 TDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLK 234
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ-----------------------NCNL 409
+LR LE+ G LTDAG+K + +L L LS + +
Sbjct: 235 SLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKI 294
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
TD L+ I+ LT L L + ++ +T AG+R+L PL LR L L KVT
Sbjct: 295 TDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVT 343
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 173/338 (51%), Gaps = 29/338 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L +++L+ + VTD+ L + L L+ ++ QI+D GL + GL+ LT L
Sbjct: 66 AGLTNLNLTNTQVTDAALKDVARFPKLTVLNVSYT-QITDEGLREIAGLTELTDLV---- 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
LD T++ G GL +L L KL +L++ +TD+ ++
Sbjct: 121 -------------------LD---YTKVSGSGLKHLAALTKLRTLSL-GSKIVTDAGLRG 157
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L G+ L+ L + + VTD+G+ + L +L L L PVT L L+ L L +L L
Sbjct: 158 LVGVRGLRQLDLRETSVTDAGLKEIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFL 217
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
+ +++ DG + + L +L L L + D GL L G L L LS+T+V +GL+
Sbjct: 218 SGTRITGDGLSELTGLKSLRLLELGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKE 277
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ L L ++L T I+D L+++A L++L L + +TD G+ L LT L L+L
Sbjct: 278 LAALKQLSGLDLGSTKITDADLKEIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNL 337
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
++T++ A L FK+L S+++ +T+ G K +K
Sbjct: 338 THTKVTNACAKTLATFKHLTSVDLHQTDVTEEGGKELK 375
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 164/318 (51%), Gaps = 9/318 (2%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
FAGL NL +L L ++ KL LN+ + ITD ++ ++GLT L L
Sbjct: 65 FAGLTNL---NLTNTQVTDAALKDVARFPKLTVLNVSYTQ-ITDEGLREIAGLTELTDLV 120
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ +KV+ SG+ +L L KL L+L VT A L L + L L+L ++D G +
Sbjct: 121 LDYTKVSGSGLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLK 180
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ + L+ L++L L + + GL +L L L+ L LS T++ GL L+GL +L +
Sbjct: 181 EIAPLSELKTLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLE 240
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L T ++D L++LAG +L L L ++T GL L +L L+ LDL +ITD+
Sbjct: 241 LGGTPLTDAGLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLK 300
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLV 424
+ NL L + +TDAGV+++ L+ L LNL+ N KTL LT
Sbjct: 301 EIAALTNLTGLTMRDTPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLT--- 357
Query: 425 SLNVSNSRITSAGLRHLK 442
S+++ + +T G + LK
Sbjct: 358 SVDLHQTDVTEEGGKELK 375
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 163/313 (52%), Gaps = 3/313 (0%)
Query: 161 NIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ N +TD+ +K ++ L L +S +++TD G+ + GL +LT L L+ V+ +
Sbjct: 70 NLNLTNTQVTDAALKDVARFPKLTVLNVSYTQITDEGLREIAGLTELTDLVLDYTKVSGS 129
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
L L+AL L L+L ++D G + L L+L + D GL + L LK
Sbjct: 130 GLKHLAALTKLRTLSLGSKIVTDAGLRGLVGVRGLRQLDLRETSVTDAGLKEIAPLSELK 189
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + V GL+ L+ LT L+ + LS T I+ L +L GL SL+ L L +TD
Sbjct: 190 TLMLVNAPVTGPGLKDLALLTKLQFLFLSGTRITGDGLSELTGLKSLRLLELGGTPLTDA 249
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L L HL L ++T +G L K L L++ +TDA +K I L++LT
Sbjct: 250 GLKQLAGFDTLGHLGLSNTKVTGAGLKELAALKQLSGLDLGSTKITDADLKEIAALTNLT 309
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L + ++ +TD + ++ LT L LN++++++T+A + L K+L S+ L VT
Sbjct: 310 GLTM-RDTPVTDAGVRNLAPLTKLRRLNLTHTKVTNACAKTLATFKHLTSVDLHQTDVTE 368
Query: 460 NDIKRLQSRDLPN 472
K L++ LPN
Sbjct: 369 EGGKELKAA-LPN 380
>gi|168698162|ref|ZP_02730439.1| hypothetical protein GobsU_01482 [Gemmata obscuriglobus UQM 2246]
Length = 295
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 149/277 (53%), Gaps = 1/277 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+VTD+G+ L GL LT L L G VT L+ L+ L +L L+L + +++D G + +
Sbjct: 11 QVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKALAP 70
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
LT L L L G+ D GL L +LK L L T+V +GL+ L NL + L T
Sbjct: 71 LTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLGGT 130
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
G++D LR+L +L +L L +TD GL L L LT L L G + D G L
Sbjct: 131 GVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAP 190
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
FKNL L++ +TDAG+K + L +LTLL+L + +TD L ++GL L +L +
Sbjct: 191 FKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGR-TQVTDDGLRELTGLKALTTLILIG 249
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +T AGL+ L L NL L L KVT K L+S
Sbjct: 250 TGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 151/279 (54%), Gaps = 2/279 (0%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+Q++D GL+ L GL+NLT L A+T G++ A L NL LDL + GL L
Sbjct: 10 LQVTDAGLKELAGLTNLTQLILL-GTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L L + +TD+ +K L +LK+L + +KVTD+G+ L + LT+L L
Sbjct: 69 APLTGLTRLALG-DTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGL 127
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G VT A L L +L L L+ ++D G ++ + L NL L L G+ D GL
Sbjct: 128 GGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L NL L+L T+V +GL+ L L NL ++L T ++D LR+L GL +L +L L
Sbjct: 188 LAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLIL 247
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+TD GL L LT LT L+L+ ++TD+G L++
Sbjct: 248 IGTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELKS 286
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 150/280 (53%), Gaps = 2/280 (0%)
Query: 164 WCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W + +TD+ +K L+GLTNL L + + VTD G+ L L+ L L+L VT A L
Sbjct: 7 WRDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLK 66
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+L+ L L L L ++D G ++ +L++L L S + D GL L NL L
Sbjct: 67 ALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLG 126
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L T V +GLR L NL ++ LS TG++D L++LA L +L L L + D GL
Sbjct: 127 LGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLK 186
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L LDL+ ++TD+G L KNL L++ +TD G++ + L +LT L
Sbjct: 187 ELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLI 246
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L +TD L+ ++GLT L LN+ +++T AG + LK
Sbjct: 247 LI-GTGVTDAGLKELAGLTNLTRLNLYRTKVTDAGWKELK 285
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 146/292 (50%), Gaps = 25/292 (8%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
R+ +T G+K AGL NL +L I +TD ++
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQL-------------------------ILLGTAVTDVGLE 42
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L NL +L + +KVTD+G+ L L LT L L VT A L L SL L
Sbjct: 43 ELAPLKNLNTLDLGKTKVTDAGLKALAPLTGLTRLALGDTGVTDAGLKELVPFKSLKTLY 102
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L +++D G ++ R NL L L G+ D GL L NL L LS T V +GL+
Sbjct: 103 LFSTKVTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLK 162
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L NL + L TG++D L++LA +L L+L + ++TD GL L L LT LD
Sbjct: 163 ELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVTDAGLKELGLLKNLTLLD 222
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L ++TD G L K L +L + G G+TDAG+K + L++LT LNL +
Sbjct: 223 LGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTNLTRLNLYRT 274
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 154/321 (47%), Gaps = 39/321 (12%)
Query: 26 EAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS 85
+ +RD + D L + G+ ++L + L G+ VTD GL L NL +
Sbjct: 5 KPWRDLQVTDAGLKELAGL------------TNLTQLILLGTAVTDVGLEELAPLKNLNT 52
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD +++D GL+ L L+ LT L+ + +T G+K
Sbjct: 53 LDLGKT-KVTDAGLKALAPLTGLTRLAL-GDTGVTDAGLKE------------------- 91
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
LV K L L + K +TD+ +K L NL L + + VTD+G+ L +
Sbjct: 92 --LVPFKSLKTLYLFSTK----VTDAGLKELGRFKNLTVLGLGGTGVTDAGLRELGRFKN 145
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT L L G VT A L L+ L +L L L ++D G ++ + NL L+L S +
Sbjct: 146 LTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKELAPFKNLAKLDLYSTKVT 205
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D GL L L NL L+L TQV GLR L+GL L ++ L TG++D L++LAGL++
Sbjct: 206 DAGLKELGLLKNLTLLDLGRTQVTDDGLRELTGLKALTTLILIGTGVTDAGLKELAGLTN 265
Query: 326 LKSLNLDARQITDTGLAALTS 346
L LNL ++TD G L S
Sbjct: 266 LTRLNLYRTKVTDAGWKELKS 286
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 1/181 (0%)
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
D QV +GL+ L+GLTNL + L T ++D L +LA L +L +L+L ++TD GL AL
Sbjct: 9 DLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKAL 68
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LTGLT L L +TD+G L FK+L++L + +TDAG+K + +LT+L L
Sbjct: 69 APLTGLTRLALGDTGVTDAGLKELVPFKSLKTLYLFSTKVTDAGLKELGRFKNLTVLGLG 128
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+TD L + L +L +S + +T AGL+ L PLKNL L L V +K
Sbjct: 129 -GTGVTDAGLRELGRFKNLTALGLSGTGVTDAGLKELAPLKNLTELGLGGTGVADVGLKE 187
Query: 465 L 465
L
Sbjct: 188 L 188
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
++ +TD L+ ++GLT L L + + +T GL L PLKNL +L L KVT +K
Sbjct: 8 RDLQVTDAGLKELAGLTNLTQLILLGTAVTDVGLEELAPLKNLNTLDLGKTKVTDAGLKA 67
Query: 465 L 465
L
Sbjct: 68 L 68
>gi|296124076|ref|YP_003631854.1| ribonuclease inhibitor [Planctomyces limnophilus DSM 3776]
gi|296016416|gb|ADG69655.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Planctomyces
limnophilus DSM 3776]
Length = 474
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 157/295 (53%), Gaps = 2/295 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I+D G+ L+ L+NL L N +T G + A NL L L R + L +L
Sbjct: 140 KITDKGVLLLKPLTNLVVLGLE-NTQLTDTGAEVLASFPNLEVLYLRRTNILDPALAHLS 198
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L KL +L++++ N +TD MK L+GL+ L+ L++ ++VTD+ + + L L LN+
Sbjct: 199 KLAKLRALDLRFTN-VTDEGMKSLAGLSQLRDLRLQATRVTDASLPLIAKLPNLQKLNVW 257
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
G T A L L+ +L L L+ +L+ +G K LTNLE L++ I ++GL +
Sbjct: 258 GENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELHVRRTRIKNDGLAVV 317
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ ++ L L DT GL +SGL NL ++L+ D ++ LAGL+SL+ L+L
Sbjct: 318 KNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVKNLAGLTSLEDLSLW 377
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
A +D G+ ++ L L L+L RITD+ A + F L L + +TDA
Sbjct: 378 ATTTSDAGIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTDA 432
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 154/291 (52%), Gaps = 1/291 (0%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D D+ ++ LT+L L++ K+TD G+ LK L L +L LE +T + L++
Sbjct: 117 IGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEVLASF 176
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L L L R + D S+L L +L+L + DEG+ +L GL L+ L L T+
Sbjct: 177 PNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATR 236
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V + L ++ L NL+ +N+ +D L +LA +L+ L LD ++T GL L L
Sbjct: 237 VTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGL 296
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L L + RI + G A ++N +R L + TD G++ + L +L L+L++
Sbjct: 297 TNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGI 356
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
D ++ ++GLT L L++ + + AG+ ++ LK L++L LE ++T
Sbjct: 357 -FGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRIT 406
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 152/310 (49%), Gaps = 2/310 (0%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
A L +L +L LE G++ LK L L L ++ +TD+ + L+ NL+ L
Sbjct: 125 VAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQ-LTDTGAEVLASFPNLEVLY 183
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ + + D +A+L L KL L+L VT + SL+ L L L L +++D
Sbjct: 184 LRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQATRVTDASLP 243
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
++L NL+ LN+ D GL L L+ LEL DT++ S GL L GLTNLE ++
Sbjct: 244 LIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLIKLGGLTNLEELH 303
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ T I + L + + ++ L L TD GL A++ L L LDL D G
Sbjct: 304 VRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVELDLTEGIFGDDGVK 363
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L +L L + +DAG++ I+DL L LNL Q +TD + I+G L L
Sbjct: 364 NLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQ-TRITDAAAKTIAGFGELTEL 422
Query: 427 NVSNSRITSA 436
N+S + +T A
Sbjct: 423 NLSQTEVTDA 432
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 27/263 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L ++DL ++VTD G+ L S L+ L +++D L + L NL L+
Sbjct: 198 SKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRLQ-ATRVTDASLPLIAKLPNLQKLNV 256
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N T G+ A L L+L+ TR+ +GL+K
Sbjct: 257 WGEN-FTDAGLSQLADTKTLRILELDD-TRLTS-----EGLIK----------------- 292
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L GLTNL+ L + +++ + G+A +K + K+ L L T L+++S L +L L
Sbjct: 293 --LGGLTNLEELHVRRTRIKNDGLAVVKNMPKMRRLLLRDTLCTDPGLEAVSGLKNLVEL 350
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+L DDG + + LT+LE L+L + D G+ ++ L LK L L T++ +
Sbjct: 351 DLTEGIFGDDGVKNLAGLTSLEDLSLWATTTSDAGIESIRDLKKLKALNLEQTRITDAAA 410
Query: 294 RHLSGLTNLESINLSFTGISDGS 316
+ ++G L +NLS T ++D +
Sbjct: 411 KTIAGFGELTELNLSQTEVTDAT 433
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 92/182 (50%), Gaps = 1/182 (0%)
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++T +G L ++ LT+L + L I+D + L L++L L L+ Q+TDTG
Sbjct: 113 AETSIGDDDLALVAKLTHLTELRLEGPKITDKGVLLLKPLTNLVVLGLENTQLTDTGAEV 172
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L S L L L I D A+L LR+L++ +TD G+K + LS L L L
Sbjct: 173 LASFPNLEVLYLRRTNILDPALAHLSKLAKLRALDLRFTNVTDEGMKSLAGLSQLRDLRL 232
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
Q +TD +L LI+ L L LNV T AGL L K LR L L+ ++T+ +
Sbjct: 233 -QATRVTDASLPLIAKLPNLQKLNVWGENFTDAGLSQLADTKTLRILELDDTRLTSEGLI 291
Query: 464 RL 465
+L
Sbjct: 292 KL 293
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 20 LTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLI 75
T V+ E + A L+DL L Q V D + +IA + +L +++ G + TD+GL
Sbjct: 210 FTNVTDEGMKSLAGLSQLRDLRL-QATRVTDASLPLIA-KLPNLQKLNVWGENFTDAGLS 267
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L D L+ L+ + +++ GL L GL+NL L RR I G+ + + +
Sbjct: 268 QLADTKTLRILELDDT-RLTSEGLIKLGGLTNLEELHVRRTR-IKNDGLAVVKNMPKMRR 325
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L L GL + GL L L++ D +K L+GLT+L+ L + + +D+
Sbjct: 326 LLLRDTLCTDPGLEAVSGLKNLVELDLTE-GIFGDDGVKNLAGLTSLEDLSLWATTTSDA 384
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
GI ++ L+KL LNLE +T A +++ G L LNL++ +++D
Sbjct: 385 GIESIRDLKKLKALNLEQTRITDAAAKTIAGFGELTELNLSQTEVTD 431
>gi|149174540|ref|ZP_01853166.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148846650|gb|EDL60987.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 309
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 1/263 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+ + S SK+ D+G+ YL L KL L+L G VT + L +L SL + L+ +
Sbjct: 39 NISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIPV 98
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
SD G +F +L+NLE LNL + D GL +L L +LK L L+ ++ + GL HLSGL
Sbjct: 99 SDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLK 158
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+LE++ LS T I+D +L L L L+ L L QITD GL + LT L L L +I
Sbjct: 159 SLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQI 218
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD G YL K++ LE+ +T+AG+ IK L ++ +NL +N +++DK + + +
Sbjct: 219 TDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNL-RNTDVSDKCITSLKKM 277
Query: 421 TGLVSLNVSNSRITSAGLRHLKP 443
L +L + + IT G+ L+
Sbjct: 278 KNLGTLYIDGTEITEEGIAKLEK 300
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 1/250 (0%)
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ GLV L L KL L++ +TD M L L +L+ + + V+DSG+A K L
Sbjct: 51 VDAGLVYLGRLSKLRKLDLSGSK-VTDDGMVHLKSLKSLREITLHGIPVSDSGLAEFKKL 109
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
L +LNL VT A L L +L SL L L +++ DG S L +LE+L L
Sbjct: 110 SNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQ 169
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
I D+ L +L L L+ L L DTQ+ GL+ + GLT L+ + L T I+D L+ L +
Sbjct: 170 ITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKM 229
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
++ L L+ QIT+ G++ + L + ++L ++D L+ KNL +L I G
Sbjct: 230 KDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTE 289
Query: 384 LTDAGVKHIK 393
+T+ G+ ++
Sbjct: 290 ITEEGIAKLE 299
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 145/283 (51%), Gaps = 27/283 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V SGS + D+GL++L S L+ LD + +++D G+ HL+ L +L ++ ++
Sbjct: 43 VSFSGSKLVDAGLVYLGRLSKLRKLDLSGS-KVTDDGMVHLKSLKSLREITL-HGIPVSD 100
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ F L NL L+L R +TD+ +K L L +
Sbjct: 101 SGLAEFKKLSNLEILNLSRTK-------------------------VTDAGLKHLKSLDS 135
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L ++ ++T G+A+L GL+ L L L +T L L L L L L Q++
Sbjct: 136 LKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQIT 195
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D+G ++ LT L+ L L + I D+GL L + +++ LEL+DTQ+ ++G+ + L N
Sbjct: 196 DEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLEN 255
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ +NL T +SD + L + +L +L +D +IT+ G+A L
Sbjct: 256 IVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 1/231 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G++ ++ + +L D G RL+ L L+L + D+G+V+L L +L+ + L
Sbjct: 38 GNISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLHGIP 97
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V SGL L+NLE +NLS T ++D L+ L L SLK L L +IT GLA L+ L
Sbjct: 98 VSDSGLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGL 157
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L +ITD A+L+ K LR L + +TD G+K IK L+ L L L +N
Sbjct: 158 KSLETLGLSETQITDDALAHLKTLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWL-RNT 216
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+TD L+ + + + L +++++IT+AG+ +K L+N+ + L + V+
Sbjct: 217 QITDDGLKYLIKMKDMEWLELNDTQITNAGISEIKVLENIVDMNLRNTDVS 267
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 25/239 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DLSGS VTD G++HLK +L+ + + I +SD GL + LSNL L+ R
Sbjct: 62 SKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH-GIPVSDSGLAEFKKLSNLEILNLSRT 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC--------- 167
+T G+K L +L +L L GL +L GL LE+L +
Sbjct: 121 K-VTDAGLKHLKSLDSLKELFLTGLEITADGLAHLSGLKSLETLGLSETQITDDALAHLK 179
Query: 168 --------------ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
ITD +K + GLT L+ L + +++TD G+ YL ++ + L L
Sbjct: 180 TLKKLRVLLLRDTQITDEGLKQIKGLTRLQRLWLRNTQITDDGLKYLIKMKDMEWLELND 239
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+T A + + L ++ +NL +SD ++ NL +L +D I +EG+ L
Sbjct: 240 TQITNAGISEIKVLENIVDMNLRNTDVSDKCITSLKKMKNLGTLYIDGTEITEEGIAKL 298
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
++ + G+++ D+G YL LR L++ G +TD G+ H+K L SL + L
Sbjct: 40 ISQVSFSGSKLVDAGLVYLGRLSKLRKLDLSGSKVTDDGMVHLKSLKSLREITLH----- 94
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 469
+ VS+S GL K L NL L L KVT +K L+S D
Sbjct: 95 ---------------GIPVSDS-----GLAEFKKLSNLEILNLSRTKVTDAGLKHLKSLD 134
>gi|46447548|ref|YP_008913.1| hypothetical protein pc1914 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401189|emb|CAF24638.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 528
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 181/341 (53%), Gaps = 31/341 (9%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +T++ L+ LKDC N++ L F C ++D GL HL L L L +T G+
Sbjct: 203 ENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGL 262
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
L L L+L C + GLV+L L+ L+ L++ +C +TD+ + L+ LT L+
Sbjct: 263 AYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQ 322
Query: 184 SLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +SC + +TD+G+A+L L L L+L C +T A L L+ L +L +L L C+ L
Sbjct: 323 HLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENL 382
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+D G + LT L+ L+L SC C L+D +GL HL+ LT
Sbjct: 383 TDAGLAHLTPLTALQHLDL-SC-----------------CFNLTD-----AGLSHLTPLT 419
Query: 301 NLESINLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FG 357
L+ +NLS ++D L L L +L+ LNL + R +TD GLA LT LT L HLDL +
Sbjct: 420 GLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYC 479
Query: 358 ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
+TD+G A+L L+ L++ LTD G+ K L++
Sbjct: 480 INLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFKTLAT 520
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 173/318 (54%), Gaps = 12/318 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
L+ LK +E L K C +TD+ + L L L+ L +S C +TD+G+AYLK L
Sbjct: 210 AHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLT 269
Query: 205 KLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC 262
L LNL GC +T A L L+ L L +L+L+ C+ L+D G + LT L+ L L C
Sbjct: 270 ALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCC 329
Query: 263 -GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRK 319
+ D GL +L L L+ L+LS + + L HL+ LT L+ + L ++D L
Sbjct: 330 ENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAH 389
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
L L++L+ L+L +TD GL+ LT LTGL HL+L ++TD+G A+L L+ L
Sbjct: 390 LTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHL 449
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS 435
+ LTDAG+ H+ L++L L+L NLTD L ++ LT L L++S R+T
Sbjct: 450 NLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTD 509
Query: 436 AGLRHLKPLKNLRSLTLE 453
GL K L SL LE
Sbjct: 510 DGLDRFKTLAT--SLNLE 525
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 163/318 (51%), Gaps = 30/318 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL HL LQ LD ++C ++D GL +L+ L+ L L+ +T G+
Sbjct: 232 VTDAGLAHLVPLKGLQHLDLSYCENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLT 291
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L LDL C + GL +L L L+ L + C +TD+ + L+ LT L+ L +
Sbjct: 292 PLVGLQHLDLSYCENLTDAGLAHLTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDL 351
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+ +++L L L L L GC +T A L L+ L +L +L+L+ C L+D G
Sbjct: 352 SCCYNLTDASLSHLTPLTALQHLYLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAG 411
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
+ LT L+ LNL C + D GL +LT L L+ L LS+ + +GL HL+ LT L
Sbjct: 412 LSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTAL 471
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RIT 361
+ ++L + +NL TD GLA LT LT L HLDL R+T
Sbjct: 472 QHLDLKY------------------CINL-----TDAGLAHLTPLTALQHLDLSRCRRLT 508
Query: 362 DSGAAYLRNFKNLRSLEI 379
D G + +LEI
Sbjct: 509 DDGLDRFKTLATSLNLEI 526
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 173/316 (54%), Gaps = 10/316 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E LN +T++ + L N++ L C VTD+G+A+L L+ L L+L C
Sbjct: 195 KIEVLNFSENTHLTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKGLQHLDLSYC 254
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L L +L +LNL+ C L+D G + L L+ L+L C + D GL +
Sbjct: 255 ENLTDAGLAYLKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAH 314
Query: 272 LTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LT L L+ L LS + + +GL HL+ LT L+ ++LS ++D SL L L++L+ L
Sbjct: 315 LTPLTALQHLGLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHL 374
Query: 330 NL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTD 386
L +TD GLA LT LT L HLDL +TD+G ++L L+ L + LTD
Sbjct: 375 YLIGCENLTDAGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTD 434
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKPLK 445
AG+ H+ L +L LNLS+ +LTD L ++ LT L L++ +T AGL HL PL
Sbjct: 435 AGLAHLTTLVALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLT 494
Query: 446 NLRSLTLESCKVTAND 461
L+ L L C+ +D
Sbjct: 495 ALQHLDLSRCRRLTDD 510
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 170/323 (52%), Gaps = 14/323 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSG-SDVTDSGLIH 76
LT L A +DC ++ L + GV D + ++ +G L +DLS ++TD+GL +
Sbjct: 207 LTNAHLLALKDCKNIEVLYFKKCRGVTDAGLAHLVPLKG--LQHLDLSYCENLTDAGLAY 264
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK + LQ L+ + C ++D GL HL L L L +T G+ L L L
Sbjct: 265 LKPLTALQHLNLSGCWNLTDAGLVHLTPLVGLQHLDLSYCENLTDAGLAHLTPLTALQHL 324
Query: 137 DLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTD 194
L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L I C +TD
Sbjct: 325 GLSCCENLTDAGLAHLALLTTLQHLDLSCCYNLTDASLSHLTPLTALQHLYLIGCENLTD 384
Query: 195 SGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLT 252
+G+A+L L L L+L C +T A L L+ L L +LNL+RC +L+D G + L
Sbjct: 385 AGLAHLTPLTALQHLDLSCCFNLTDAGLSHLTPLTGLQHLNLSRCYKLTDAGLAHLTTLV 444
Query: 253 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF- 309
L+ LNL C + D GL +LT L L+ L+L + +GL HL+ LT L+ ++LS
Sbjct: 445 ALQHLNLSECRHLTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRC 504
Query: 310 TGISDGSLRKLAGLSSLKSLNLD 332
++D L + L++ SLNL+
Sbjct: 505 RRLTDDGLDRFKTLAT--SLNLE 525
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD +CI ++D GL HL L+ L L R +T G+ F
Sbjct: 457 LTDAGLAHLTPLTALQHLDLKYCINLTDAGLAHLTPLTALQHLDLSRCRRLTDDGLDRFK 516
Query: 129 GLINLVKLDLER 140
L + L++ R
Sbjct: 517 TLATSLNLEIVR 528
>gi|108763744|ref|YP_632240.1| leucine-rich repeat-containing protein [Myxococcus xanthus DK 1622]
gi|108467624|gb|ABF92809.1| leucine-rich repeat domain protein [Myxococcus xanthus DK 1622]
Length = 624
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 211/461 (45%), Gaps = 39/461 (8%)
Query: 16 YSRCLTEVSLEA--------FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
Y+ L V EA R+ + +L G GV + V Q S ++++ +SG+
Sbjct: 90 YAEPLRPVRTEAEAREIAAVLREHHVPELSFGAV-GVPAPELLVALLQESGVVALQVSGT 148
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D ++ L L++ + L++L N ++++ GL L+ + L L +
Sbjct: 149 DFGNAHLASLENATQLEALHLN-ATRVTNVGLAPLKRMRRLAVLRLDETPV-------SD 200
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL +L + R + G V+ +GL L +P L+ L +
Sbjct: 201 AGLASLSEHTTLRRVTLAGTAVSPQGLGFLAR--------------QP-----GLEELDL 241
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + V D+ +A L G L LNL G VT A L LSA+ SL L L R SD
Sbjct: 242 SDTAVDDTVLAVLPG-APLHTLNLSGTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLH 300
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ L LE+L+L S + D GL++L L L+ L LS ++ +GLRHL+GL+ LE+++L
Sbjct: 301 ITGLRELEALHLGSTQVTDAGLLHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHL 360
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
T + D +LR L GL+ L+ L+L IT TGL L++L L L L G +TD
Sbjct: 361 DDTLVGDSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTA 420
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSL 426
L L L + + + H+ L L+LS+ TD+ + I GL SL
Sbjct: 421 LAPLSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSK-TGFTDEWVPSIRQAFPGLHSL 479
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +T AGL L ++ + + + + RL +
Sbjct: 480 KAERTLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLHT 520
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 120/430 (27%), Positives = 194/430 (45%), Gaps = 56/430 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L V L+G+ V+ GL L L+ LD + + D L L G + L +L+
Sbjct: 207 SEHTTLRRVTLAGTAVSPQGLGFLARQPGLEELDLSDT-AVDDTVLAVLPG-APLHTLNL 264
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+T G++ + + +L +L L R L+++ GL +LE+L++ +TD+ +
Sbjct: 265 S-GTKVTNAGLRGLSAMPSLRRLGLARTAASDASLLHITGLRELEALHLG-STQVTDAGL 322
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+ L L++L +S +++ +G+ +L GL +L L+L+ V + L L L L L
Sbjct: 323 LHLAKLPALRALVLSKARIRGAGLRHLAGLSRLEALHLDDTLVGDSALRHLRGLNELREL 382
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+L+R ++ G ++ S L LESL L + D+ L L L L L LS T +G L
Sbjct: 383 DLSRTAITGTGLQELSTLVALESLWLSGLALTDDSLTALAPLSQLTRLALSHTPIGPEAL 442
Query: 294 RHLSGLTNLESINLSFTGISD---GSLRK-LAGLSSLKS----------------LNLDA 333
HL L ++LS TG +D S+R+ GL SLK+ L+A
Sbjct: 443 NHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAERTLLTDAGLGQFAEWTELEA 502
Query: 334 RQITDT-----GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+ T GL L +L LT LDL R+ G L+ F L L + G D
Sbjct: 503 IHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQGFTKLVWLSVAGVRTGDEM 562
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ H+ L +L ++ +++T AGL L L +LR
Sbjct: 563 LGHLPR---------------------------SLRTLYLTRTKVTDAGLPALHKLPHLR 595
Query: 449 SLTLESCKVT 458
L L V+
Sbjct: 596 ELDLRGTAVS 605
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 150/315 (47%), Gaps = 13/315 (4%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++ L + VTD+GL+HL L++L + +I GL HL GLS L +L + +
Sbjct: 309 ALHLGSTQVTDAGLLHLAKLPALRALVLSKA-RIRGAGLRHLAGLSRLEALHLD-DTLVG 366
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN--CITDSDMKPLSG 178
++ GL L +LDL R GL L L+ LESL W + +TD + L+
Sbjct: 367 DSALRHLRGLNELRELDLSRTAITGTGLQELSTLVALESL---WLSGLALTDDSLTALAP 423
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
L+ L L +S + + + +L L L+L T + S+ A L L R
Sbjct: 424 LSQLTRLALSHTPIGPEALNHLGSRPLLRHLDLSKTGFTDEWVPSIRQAFPGLHSLKAER 483
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
L+D G +F+ T LE++++ I GL L L L L+L T++ S G + L
Sbjct: 484 TLLTDAGLGQFAEWTELEAIHVAGTLINGSGLTRLHTLARLTTLDLGATRLDSEGQKALQ 543
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G T L + LS G+ G L L SL++L L ++TD GL AL L L LDL
Sbjct: 544 GFTKL--VWLSVAGVRTGD-EMLGHLPRSLRTLYLTRTKVTDAGLPALHKLPHLRELDLR 600
Query: 357 GARI-TDSGAAYLRN 370
G + T++ +A R
Sbjct: 601 GTAVSTEARSALARE 615
>gi|46447554|ref|YP_008919.1| hypothetical protein pc1920 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401195|emb|CAF24644.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 517
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 155/295 (52%), Gaps = 33/295 (11%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK C NL+ L C I+D GL HL L+ L
Sbjct: 238 LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQ------------------- 278
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LDL +C ++ G GL +L L L+ L++ C+ +TD+ + L+ LT L+ L +
Sbjct: 279 ------HLDLSQCRKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNL 332
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C +TD+G+ +L L L L+L C + A L L L +L YL+L+ C L+D G
Sbjct: 333 SDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAG 392
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
L L+ LNL C + D GL +LT L L+ L LS+ + +GL HL+ LT L
Sbjct: 393 LAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTAL 452
Query: 303 ESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL 355
+ ++LS ++D L L L+ L+ L+L + +TD GLA LT LTGL HLDL
Sbjct: 453 QHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDL 507
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 157/283 (55%), Gaps = 9/283 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD+ + L NLK L + +C +TD G+A+L L L L+L C
Sbjct: 226 KIEALNFSENAYLTDAHLLALKVCKNLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQC 285
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T L L+ L +L +L+L+ C L+D G + LT L+ LNL C + D GLV+
Sbjct: 286 RKLTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVH 345
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L+ L L+ L+LS ++ +GL HL LT L+ ++LS ++D L L L L+ L
Sbjct: 346 LSPLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYL 405
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
NL +TD GLA LT L L HL+L +TD+G +L L+ L++ LTD
Sbjct: 406 NLRYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTD 465
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
AG+ H+ L+ L L+LS NLTD L ++ LTGL L++S
Sbjct: 466 AGLAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLS 508
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 253 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-F 309
NL+ L+L++C I D+GL +LT L L+ L+LS ++ GL HL+ LT L+ ++LS
Sbjct: 251 NLKVLHLEACQAITDDGLAHLTPLTALQHLDLSQCRKLTGIGLAHLTPLTALQHLDLSGC 310
Query: 310 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAY 367
++D L LA L++L+ LNL D +TD GL L+ L L HLDL + R+ +G A+
Sbjct: 311 DNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLSPLIALQHLDLSYCWRLNYAGLAH 370
Query: 368 LRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L+ L+ L++ LTDAG+ H+K L L LNL NLTD L ++ L L L
Sbjct: 371 LKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLMALQHL 430
Query: 427 NVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
N+S +T AGL HL PL L+ L L C+
Sbjct: 431 NLSECYHLTDAGLTHLTPLTALQHLDLSHCR 461
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 11/281 (3%)
Query: 11 FNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SD 68
F+E Y LT+ L A + C L+ L L + D + + + ++L +DLS
Sbjct: 232 FSENAY---LTDAHLLALKVCKNLKVLHLEACQAITDDGLAHL-TPLTALQHLDLSQCRK 287
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T GL HL + LQ LD + C ++D GL HL L+ L L+ +T G+ +
Sbjct: 288 LTGIGLAHLTPLTALQHLDLSGCDNLTDAGLAHLAPLTALQHLNLSDCENLTDAGLVHLS 347
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL C R+ + GL +LK L L+ L++ C +TD+ + L L L+ L +
Sbjct: 348 PLIALQHLDLSYCWRLNYAGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNL 407
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
C +TD+G+A+L L L LNL C +T A L L+ L +L +L+L+ C+ L+D G
Sbjct: 408 RYCENLTDAGLAHLTPLMALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAG 467
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS 284
+ LT L+ L+L C + D GL LT L L+ L+LS
Sbjct: 468 LAHLTSLTVLQYLDLSYCKNLTDAGLARLTPLTGLQHLDLS 508
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
+GL HLK + LQ LD + CI ++D GL HL+ L L L+ R +T G+ L+
Sbjct: 366 AGLAHLKPLTALQYLDLSHCINLTDAGLAHLKPLMRLQYLNLRYCENLTDAGLAHLTPLM 425
Query: 132 NLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L L+L C + GL +L L L+ L++ C +TD+ + L+ LT L+ L +S C
Sbjct: 426 ALQHLNLSECYHLTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYC 485
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC 214
+TD+G+A L L L L+L C
Sbjct: 486 KNLTDAGLARLTPLTGLQHLDLSRC 510
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL + LQ LD + C ++D GL HL L+ L L +T G+
Sbjct: 438 LTDAGLTHLTPLTALQHLDLSHCRSLTDAGLAHLTSLTVLQYLDLSYCKNLTDAGLARLT 497
Query: 129 GLINLVKLDLERC 141
L L LDL RC
Sbjct: 498 PLTGLQHLDLSRC 510
>gi|290970865|ref|XP_002668286.1| predicted protein [Naegleria gruberi]
gi|284081599|gb|EFC35542.1| predicted protein [Naegleria gruberi]
Length = 368
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 188/358 (52%), Gaps = 4/358 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI D + + + LTSL NN I +G+K+ + + LV L++ G+ ++
Sbjct: 13 QIGDKEAKFISEMKQLTSLDIY-NNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SL+I N I D +K +S + L SL IS +++ D ++ +++LT LN+
Sbjct: 72 EMKQLTSLDI-GGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIY 130
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ + S+ + L L++ R Q+S +G + S + L SLN+ + I DEG+ ++
Sbjct: 131 NNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRI-DEGVKSI 189
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ + L L +++ ++G + +S + L S+++ I D ++ + L SLN+
Sbjct: 190 SEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIY 249
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I D G+ ++ + LT LD+ RI D G ++ K L SL+I + D GVK I
Sbjct: 250 NNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKSI 309
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ LT LN+S+N + D+ + IS + L SL++ ++I G++ + +K L SL
Sbjct: 310 SEMKQLTSLNISEN-RIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASL 366
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 166/335 (49%), Gaps = 32/335 (9%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K +S + L SL I +++ D G+ + +++L LN+ + + S+
Sbjct: 12 NQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNNRIGDEGVKSII 71
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG---------------------- 263
+ L L++ ++ D+G + S + L SLN+
Sbjct: 72 EMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNIYN 131
Query: 264 --IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
IGDEG+ ++ + LK L++ Q+ G + +S + L S+N+ I +G ++ ++
Sbjct: 132 NRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEG-VKSIS 190
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ L SLN+ +I D ++ + LT LD++ RI D GA ++ K L SL I
Sbjct: 191 EMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNIYN 250
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ D GVK I ++ LT L++ +N + D+ ++ IS + L SL++S +RI G++ +
Sbjct: 251 NRIGDEGVKSIIEMKRLTSLDIGRN-RIGDEGVKFISEMKQLASLDISENRIGDEGVKSI 309
Query: 442 KPLKNLRSLTLESCKV------TANDIKRLQSRDL 470
+K L SL + ++ + +++KRL+S D+
Sbjct: 310 SEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDI 344
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 180/359 (50%), Gaps = 5/359 (1%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ DK I S+ L S+D+ + + D G+ + + L SL+ + +I D G++ +
Sbjct: 14 IGDKEAKFI-SEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNI-YNNRIGDEGVKSII 71
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSL N I +G+K + + L L++ + + +L SLNI
Sbjct: 72 EMKQLTSLDIG-GNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISEMKQLTSLNI- 129
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I D +K + + LKSL I ++++ G ++ +++L LN+ + S
Sbjct: 130 YNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNNRIDEGV-KS 188
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+ ++ D + S + L SL++ + IGDEG + ++ + L L +
Sbjct: 189 ISEMKQLTSLNIAENRIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFISKMKQLTSLNI 248
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ ++G G++ + + L S+++ I D ++ ++ + L SL++ +I D G+ +
Sbjct: 249 YNNRIGDEGVKSIIEMKRLTSLDIGRNRIGDEGVKFISEMKQLASLDISENRIGDEGVKS 308
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ + LT L++ RI D GA + K L+SL+I G + D GVK I ++ L LN
Sbjct: 309 ISEMKQLTSLNISENRIGDEGAKSISEMKRLKSLDIGGNQIGDEGVKFISEMKQLASLN 367
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 143/274 (52%), Gaps = 8/274 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT L + G + +S + L L++ ++ D+G + S + L SLN+ +
Sbjct: 1 MKQLTSLIISGNQIGDKEAKFISEMKQLTSLDIYNNRIGDEGVKSISEMKQLVSLNIYNN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IGDEG+ ++ + L L++ ++G G++ +S + L S+N+S I D ++
Sbjct: 61 RIGDEGVKSIIEMKQLTSLDIGGNRIGDEGVKFISEMKQLTSLNISENQIGDKEATFISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ +I D G+ ++ + L LD+ +I+ GA ++ K L SL I
Sbjct: 121 MKQLTSLNIYNNRIGDEGVKSIIEMKQLKSLDIGRNQISVEGAKFISEMKQLVSLNIYNN 180
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ D GVK I ++ LT LN+++N + DK + IS + L SL++ N+RI G +
Sbjct: 181 RI-DEGVKSISEMKQLTSLNIAEN-RIGDKEAKFISEMKQLTSLDIYNNRIGDEGAIFIS 238
Query: 443 PLKNLRSLTLESCKVTAN------DIKRLQSRDL 470
+K L SL + + ++ ++KRL S D+
Sbjct: 239 KMKQLTSLNIYNNRIGDEGVKSIIEMKRLTSLDI 272
>gi|290998894|ref|XP_002682015.1| predicted protein [Naegleria gruberi]
gi|284095641|gb|EFC49271.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 154/293 (52%), Gaps = 3/293 (1%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL I +++ G+ Y+ +++LT LN+ ++
Sbjct: 111 VNLKVSRWLLDSVDQLKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEIS 170
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+S + L L ++ ++ D+G + S + L SLN+ I DEG +++ +
Sbjct: 171 DEGAKYISEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQ 230
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L + ++G G +++S + L S++++ I D + ++ + L SLN+ +I
Sbjct: 231 LISLSIGYNRIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGFNEIG 290
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT LD+ I+D GA Y+ K L L I ++D G K+I +L
Sbjct: 291 DEGAKYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQ 350
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LT L+++ N + ++ + IS + L+SLN+ +RI G +++ +K L SL
Sbjct: 351 LTSLDITDN-KIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSL 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 51/324 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ + + G+ ++ + L SL+ + I+ISD G +++ + LTSL +
Sbjct: 130 SEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNIS-EIEISDEGAKYISEMKQLTSL-Y 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G K ++ + +L SLNI CN I+D
Sbjct: 188 IHNNEIGDEGSK------------------------HISEMKQLTSLNIG-CNEISDEGA 222
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G Y+ +++LT L
Sbjct: 223 KHISEMNQLISLSIGYNRIGDEGFKYISEMKQLT------------------------SL 258
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++ ++ D+G + S + L SLN+ IGDEG ++ L L L++S+T++ G
Sbjct: 259 DITDDEIGDEGAKYISEMKQLTSLNIGFNEIGDEGAKYISELKQLTSLDISETEISDEGA 318
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++S + L + + + ISD + ++ L L SL++ +I + G ++ + L L
Sbjct: 319 KYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSLDITDNKIGNEGAKYISEMNQLISL 378
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
++ RI D GA Y+ K L SL
Sbjct: 379 NIGYNRIGDEGAKYISEMKQLTSL 402
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 27/235 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ + +++ D G H+ + L SL+ C +ISD G +H+ ++ L SLS
Sbjct: 178 SEMKQLTSLYIHNNEIGDEGSKHISEMKQLTSLNIG-CNEISDEGAKHISEMNQLISLSI 236
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 237 GYN-RIGDEGFKYISEMKQLTSLDITDDEIGDEGAKYISEMKQLTSLNIGF-NEIGDEGA 294
Query: 174 KPLSGLTNLKSLQIS------------------------CSKVTDSGIAYLKGLQKLTLL 209
K +S L L SL IS ++++D G Y+ L++LT L
Sbjct: 295 KYISELKQLTSLDISETEISDEGAKYISEMKQLIWLTIGYNEISDKGAKYISELKQLTSL 354
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
++ + +S + L LN+ ++ D+G + S + L SL S G
Sbjct: 355 DITDNKIGNEGAKYISEMNQLISLNIGYNRIGDEGAKYISEMKQLTSLRQISLGF 409
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L ++ + LT LD++ RI G Y+ K L SL I ++D G K+I ++ LT
Sbjct: 126 LKFISEMKQLTSLDIYSNRIGVEGVKYISEMKQLTSLNISEIEISDEGAKYISEMKQLTS 185
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L + N + D+ + IS + L SLN+ + I+ G +H+ + L SL++
Sbjct: 186 LYI-HNNEIGDEGSKHISEMKQLTSLNIGCNEISDEGAKHISEMNQLISLSI 236
>gi|168699408|ref|ZP_02731685.1| hypothetical protein GobsU_07802 [Gemmata obscuriglobus UQM 2246]
Length = 320
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 142/238 (59%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +TD+ MK L+ L NL SL++ VTD+G+ L L+KLT L L VT A + L+
Sbjct: 59 NKMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L SL L+L ++D G ++ + LT L +L+L + D GL L L NL L L
Sbjct: 119 SLASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGS 178
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
T V + L+ L+ LTNL++++L T ++D L++LA L+SL +L L A ++TD GL LT
Sbjct: 179 TAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLT 238
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L+ L+L G ++T +G L KNL L++ +TDAG+K + L++L +L L
Sbjct: 239 PLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRL 296
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 1/249 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ L L L SL + +TD+ +K L+ L L +LQ++ +KVTD+G+ L L
Sbjct: 64 AGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELASLAS 122
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT L+L VT A + L+ L L L+L+ +++D G ++ + L NL +L+L S +
Sbjct: 123 LTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGSTAVT 182
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L L L NLK L L DT++ +GL+ L+ LT+L ++ L+ T ++D L+ L L +
Sbjct: 183 GASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKN 242
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L LNL ++T GL L +L LT LDL +TD+G L NL+ L + G +T
Sbjct: 243 LSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVT 302
Query: 386 DAGVKHIKD 394
GVK KD
Sbjct: 303 TKGVKEFKD 311
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 140/249 (56%), Gaps = 2/249 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G++ L L NLTSL +T G+KA A L L L L G+ L
Sbjct: 60 KMTDAGMKELAALRNLTSLKL-IGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELA 118
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L +L++ N +TD+ +K L+ LT L +L +S +KVTD+G+ L L+ L L+L
Sbjct: 119 SLASLTTLDLASTN-VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLG 177
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
VT A L L+ L +L L+L +++D G ++ + LT+L +L L + + D GL L
Sbjct: 178 STAVTGASLKELAPLTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGL 237
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
T L NL L L T+V S+GL+ L+ L NL ++L T ++D L++L L++LK L L
Sbjct: 238 TPLKNLSDLNLGGTKVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLV 297
Query: 333 ARQITDTGL 341
++T G+
Sbjct: 298 GAKVTTKGV 306
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 25/276 (9%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
K+TD+G+ L L+ LT L L G VT A L +L+ L L L L +++D G ++ +
Sbjct: 60 KMTDAGMKELAALRNLTSLKLIGPVVTDAGLKALAPLKKLTTLQLTAAKVTDAGVKELAS 119
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L +L +L+L S + D G+ L L L L+LS T+V +GL+ L+ L NL +++L T
Sbjct: 120 LASLTTLDLASTNVTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSLGST 179
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
++ SL++LA L++LK+L+L + ++TD+G L
Sbjct: 180 AVTGASLKELAPLTNLKTLHL------------------------YDTKMTDAGLKELAP 215
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+L +L + +TDAG+K + L +L+ LNL +T L+ ++ L L L++
Sbjct: 216 LTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLG-GTKVTSAGLKELAALKNLTVLDLDV 274
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ +T AGL+ L PL NL+ L L KVT +K +
Sbjct: 275 TAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEFK 310
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 124/238 (52%), Gaps = 3/238 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+GL L L +L +++D G++ L L++LT+L N
Sbjct: 75 LTSLKLIGPVVTDAGLKALAPLKKLTTLQLT-AAKVTDAGVKELASLASLTTLDLASTN- 132
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G+K A L L LDL GL L L L +L++ +T + +K L+
Sbjct: 133 VTDAGVKELAPLTRLTALDLSGTKVTDAGLKELAPLKNLVTLSL-GSTAVTGASLKELAP 191
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNLK+L + +K+TD+G+ L L LT L L VT A L L+ L +L LNL
Sbjct: 192 LTNLKTLHLYDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGT 251
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+++ G ++ + L NL L+LD + D GL LT L NLK L L +V + G++
Sbjct: 252 KVTSAGLKELAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGVKEF 309
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 28/226 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D + +AS +SL ++DL+ ++VTD+G+ L + L +LD + +++D GL+ L
Sbjct: 109 VTDAGVKELASL-ASLTTLDLASTNVTDAGVKELAPLTRLTALDLS-GTKVTDAGLKELA 166
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L NL +LS + A+T +K A L NL L L
Sbjct: 167 PLKNLVTLSL-GSTAVTGASLKELAPLTNLKTLHL------------------------- 200
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ +TD+ +K L+ LT+L +L ++ +KVTD+G+ L L+ L+ LNL G VT+A L
Sbjct: 201 YDTKMTDAGLKELAPLTSLTTLTLAATKVTDAGLKGLTPLKNLSDLNLGGTKVTSAGLKE 260
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
L+AL +L L+L+ ++D G ++ + LTNL+ L L + +G+
Sbjct: 261 LAALKNLTVLDLDVTAVTDAGLKELTPLTNLKVLRLVGAKVTTKGV 306
>gi|290984426|ref|XP_002674928.1| predicted protein [Naegleria gruberi]
gi|284088521|gb|EFC42184.1| predicted protein [Naegleria gruberi]
Length = 612
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 186/388 (47%), Gaps = 4/388 (1%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + + ++ L SL+ + I D +E + L LTSL + N I ++G+K
Sbjct: 95 GVKIDSESVTYIGQLKQLTSLEIQ-GMDIDDEHVESMAELKQLTSL-YISGNYIGSEGVK 152
Query: 126 AFAGLIN-LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ N L KL++ + G + L +L SL I + I D+ + LSGL +L +
Sbjct: 153 IISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTN 212
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L IS K+ G Y+ ++LT LN+ C + L S+S L L L+++ ++S +G
Sbjct: 213 LDISRIKIGSGGAQYIGKFEQLTCLNINTCSIDDKVLQSISQLKKLIVLHISENEISIEG 272
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ S+L L SL + GI E ++ L L L+++ V G +++ + L +
Sbjct: 273 AKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTT 332
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ +S + + ++ ++ L L++ I G+ + L LT L + + G
Sbjct: 333 LLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSILESHFDGEG 392
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
Y+ KNL L + GVK+I L+ LT LN+ N ++D+ + IS L L
Sbjct: 393 LEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYN-RISDEGAKYISELKQLK 451
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L++S++ I+S G +L LKNL L +
Sbjct: 452 ELSISDNSISSEGANYLTDLKNLTKLVI 479
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 206/447 (46%), Gaps = 27/447 (6%)
Query: 32 ALQDLCLGQYPGVN-DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL---- 86
++ +LC+ GV D Q L S+++ G D+ D + + + L SL
Sbjct: 84 SVTNLCIPYVVGVKIDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISG 143
Query: 87 -------------DFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
FN + I + G +++ L LTSL N++I G+
Sbjct: 144 NYIGSEGVKIISESFNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIY 203
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+GL +L LD+ R GG + +L LNI C+ I D ++ +S L L L
Sbjct: 204 LSGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNINTCS-IDDKVLQSISQLKKLIVLH 262
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS ++++ G Y+ L +LT L + + + +S L L YL++ + + ++G +
Sbjct: 263 ISENEISIEGAKYISKLNQLTSLYISESGIRSEQARYISELKQLTYLDVTKNYVREEGAK 322
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ L +L + + ++G ++ + L L++S + G+ H+ L L ++
Sbjct: 323 YIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELS 382
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ + L ++ L +L LN ++ G+ ++ L LT L++ RI+D GA
Sbjct: 383 ILESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAK 442
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
Y+ K L+ L I ++ G ++ DL +LT L ++ N NL + IS L L L
Sbjct: 443 YISELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGN-NLGNDGAMHISELKKLTIL 501
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLE 453
++S++ I+S G +HL LKNL L ++
Sbjct: 502 DISHNSISSEGAKHLSDLKNLTELVIK 528
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 161/329 (48%), Gaps = 3/329 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+IS G +++ L+ LTSL + + I ++ + + L L LD+ + G ++
Sbjct: 267 EISIEGAKYISKLNQLTSL-YISESGIRSEQARYISELKQLTYLDVTKNYVREEGAKYIR 325
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ KL +L + N + + + +S +T L L IS + + G+ ++ L++LT L++
Sbjct: 326 NMKKLTTLLVSE-NYVCEQGAEYISEMTQLTKLDISVNNINKKGVFHICKLKQLTELSIL 384
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
L+ +S L +L LN ++ G + S+L L LN+ I DEG +
Sbjct: 385 ESHFDGEGLEYISELKNLTILNFPYSEMRGVGVKYISQLNQLTCLNIPYNRISDEGAKYI 444
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L LK L +SD + S G +L+ L NL + ++ + + ++ L L L++
Sbjct: 445 SELKQLKELSISDNSISSEGANYLTDLKNLTKLVITGNNLGNDGAMHISELKKLTILDIS 504
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I+ G L+ L LT L + G + + GA + K L L++C ++D G K I
Sbjct: 505 HNSISSEGAKHLSDLKNLTELVIKGNNLGNDGAMSISELKQLTHLDVCDNNISDEGFKAI 564
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLT 421
++ LT L++ +N +++ + +E I +T
Sbjct: 565 SKMNQLTRLSIYEN-SISGEGVEFIRKMT 592
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 165/364 (45%), Gaps = 12/364 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL--EH 101
++DK + I SQ L+ + +S ++++ G ++ + L SL IS+ G+ E
Sbjct: 244 IDDKVLQSI-SQLKKLIVLHISENEISIEGAKYISKLNQLTSL------YISESGIRSEQ 296
Query: 102 LRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R +S L L++ N + +G K + L L + G + + +L
Sbjct: 297 ARYISELKQLTYLDVTKNYVREEGAKYIRNMKKLTTLLVSENYVCEQGAEYISEMTQLTK 356
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N I + + L L L I S G+ Y+ L+ LT+LN +
Sbjct: 357 LDIS-VNNINKKGVFHICKLKQLTELSILESHFDGEGLEYISELKNLTILNFPYSEMRGV 415
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+ +S L L LN+ ++SD+G + S L L+ L++ I EG LT L NL
Sbjct: 416 GVKYISQLNQLTCLNIPYNRISDEGAKYISELKQLKELSISDNSISSEGANYLTDLKNLT 475
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L ++ +G+ G H+S L L +++S IS + L+ L +L L + + +
Sbjct: 476 KLVITGNNLGNDGAMHISELKKLTILDISHNSISSEGAKHLSDLKNLTELVIKGNNLGND 535
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G +++ L LTHLD+ I+D G + L L I ++ GV+ I+ ++ T
Sbjct: 536 GAMSISELKQLTHLDVCDNNISDEGFKAISKMNQLTRLSIYENSISGEGVEFIRKMTQST 595
Query: 400 LLNL 403
+++
Sbjct: 596 FIDI 599
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 30/225 (13%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+L L SL + I DE + ++ L L L +S +GS G++ +S ES N
Sbjct: 108 QLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIIS-----ESFN--- 159
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-GARITDSGAAYL 368
L LN+ A I + G ++ L LT L++ I D+G YL
Sbjct: 160 ---------------KLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYL 204
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
++L +L+I + G ++I LT LN++ C++ DK L+ IS L L+ L++
Sbjct: 205 SGLEHLTNLDISRIKIGSGGAQYIGKFEQLTCLNIN-TCSIDDKVLQSISQLKKLIVLHI 263
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
S + I+ G +++ L L SL ++ + I+ Q+R + L
Sbjct: 264 SENEISIEGAKYISKLNQLTSLY-----ISESGIRSEQARYISEL 303
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RN 370
I S+ + L L SL + I D + ++ L LT L + G I G + +
Sbjct: 98 IDSESVTYIGQLKQLTSLEIQGMDIDDEHVESMAELKQLTSLYISGNYIGSEGVKIISES 157
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
F L L I + + G K+I L LT L ++ N ++ D + +SGL L +L++S
Sbjct: 158 FNKLTKLNISANYIDNVGAKYISQLKQLTSLEIACNDSIGDAGIIYLSGLEHLTNLDISR 217
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+I S G +++ + L L + +C + D K LQS
Sbjct: 218 IKIGSGGAQYIGKFEQLTCLNINTCSI---DDKVLQS 251
>gi|32477504|ref|NP_870498.1| adenylate cyclase regulatory protein [Rhodopirellula baltica SH 1]
gi|32448058|emb|CAD77575.1| conserved hypothetical protein-putative adenylate cyclase
regulatory protein [Rhodopirellula baltica SH 1]
Length = 513
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 157/322 (48%), Gaps = 9/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 176 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 231
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 232 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 289
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D +A LKGL KL L + GC VT
Sbjct: 290 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGE 349
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNL 278
+ ++ +L L + DDG + S+L + +++ C + EG+ L L L
Sbjct: 350 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLTGL 409
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L +T+ L L NLE +NL T ++D SL L ++ LK+LN+ Q+ D
Sbjct: 410 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 469
Query: 339 TGLAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 470 DSFLELAKLPNLKSMNVANTSI 491
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 174/395 (44%), Gaps = 61/395 (15%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I K D N+ F I GG+E HLRG+ N T +F I G
Sbjct: 128 LTEAGYILTKNDDGNV----VEFSIANQKGGIEESLQHLRGIPNTTEATFN-GPGIDDAG 182
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 183 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 217
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 218 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 277
Query: 244 GCEKFSRLT------------------------NLESLNLDSCGIGDEGLVNLTGLCNLK 279
G K + L LE+L D I DE + L GL LK
Sbjct: 278 GLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLK 337
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITD 338
L + V G++H++G L L + + D L+ ++ L ++ +++ + R +
Sbjct: 338 RLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASP 397
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+A L LTGLT+L L+ + D A + NL L + +TD + + ++ L
Sbjct: 398 EGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKL 457
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
LN++ L D + ++ L L S+NV+N+ I
Sbjct: 458 KTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 491
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ L G+ N + + D+G+ LK L L L L +T L ++ + S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L L R ++D+G E + L+ L +++L + IGD G+ +L + L ++L ++V
Sbjct: 216 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 275
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL L+ L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 276 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 334
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 335 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISE-CR 393
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 394 LASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 444
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ N + GI D G+ NL L NLK L L+DT + L+ + +T+L+++ L T
Sbjct: 165 IPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDALFLRRT 224
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR- 369
G++D L L GLS L++++L I D G+ +L + L + L +++TD G L
Sbjct: 225 GVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAP 284
Query: 370 ------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
NF L +L+ + D + +K LS L L + +
Sbjct: 285 LPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRI-RG 343
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
C++T + ++ I+G L + +S + GL+ + L + + + C++ + +
Sbjct: 344 CDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPE 398
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
+ L L + T G I D+G L++ NL+ L + +TD +K + +++S
Sbjct: 156 EESLQHLRGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 215
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KV
Sbjct: 216 LDALFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKV 274
Query: 458 TANDIKRL 465
T + +L
Sbjct: 275 TDEGLVKL 282
>gi|440717669|ref|ZP_20898151.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
gi|436437289|gb|ELP30945.1| hypothetical protein RBSWK_05211 [Rhodopirellula baltica SWK14]
Length = 442
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 158/322 (49%), Gaps = 9/322 (2%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ--ISDGGL 99
PG++D M+ + S ++L + L+ + +TD LK + SLD F + ++D GL
Sbjct: 105 PGIDDAGMENLKSL-ANLKRLTLADTAITDQ---TLKTVGEMTSLDALFLRRTGVTDEGL 160
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S
Sbjct: 161 ELLTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVKLEKSKVTDEGLVKLAPL-PLKS 218
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
+N +C I MK L L++LQ SK+ D+ +A LKGL KL L + GC VT
Sbjct: 219 INFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGE 278
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNL 278
+ ++ +L L + DDG + S+L + +++ C + EG+ L L L
Sbjct: 279 GIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLASPEGIAQLGKLIGL 338
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L +T+ L L NLE +NL T ++D SL L ++ LK+LN+ Q+ D
Sbjct: 339 TYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGD 398
Query: 339 TGLAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 399 DSFLELAKLPNLKSMNVANTSI 420
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 183/396 (46%), Gaps = 39/396 (9%)
Query: 69 VTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLE----HLRGLSNLTSLSFRRNNAITAQG 123
+T++G I KD N+ F I GG+E HL G+ N T +F I G
Sbjct: 57 LTEAGYILTKDDDGNV----VEFSIANQKGGIEESLQHLSGIPNTTEATFN-GPGIDDAG 111
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ L NL +L L ITD +K + +T+L
Sbjct: 112 MENLKSLANLKRLTLADT-------------------------AITDQTLKTVGEMTSLD 146
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L + + VTD G+ L GL KL ++L + A +DSL+ + +L + L + +++D+
Sbjct: 147 ALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNL 302
G K + L L+S+N + C + + + G L+ L+ +++ + + L GL+ L
Sbjct: 207 GLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSKL 265
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-T 361
+ + + ++ ++ +AG +L L + D GL ++ L +TH+D+ R+ +
Sbjct: 266 KRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRLAS 325
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G A L L L + D + DL +L LNL ++ +TD++L ++ +T
Sbjct: 326 PEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNL-KSTAVTDESLPVLMKMT 384
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L +LNV+ +++ L L NL+S+ + + +
Sbjct: 385 KLKTLNVAGTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ LK L L L L +T L ++ + S
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L L R ++D+G E + L+ L +++L + IGD G+ +L + L ++L ++V
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL L+ L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 205 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLS 263
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 264 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISE-CR 322
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + L GL L + ++ L L NL L L+S VT
Sbjct: 323 LASPEGIAQLGKLIGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 25/244 (10%)
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
++ + S + N + GI D G+ NL L NLK L L+DT + L+ + +T+
Sbjct: 85 EESLQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTS 144
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L+++ L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 LDALFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVT 204
Query: 362 DSGAAYLR-------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSS 397
D G L NF L +L+ + DA + +K LS
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDASMAELKGLSK 264
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTHVDISECRL 323
Query: 458 TAND 461
+ +
Sbjct: 324 ASPE 327
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L+ + T G I D+G L++ NL+ L + +TD +K + +++SL
Sbjct: 88 LQHLSGIPNTTEATFNGPGIDDAGMENLKSLANLKRLTLADTAITDQTLKTVGEMTSLDA 147
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KVT
Sbjct: 148 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVKLEKSKVTDE 206
Query: 461 DIKRL 465
+ +L
Sbjct: 207 GLVKL 211
>gi|290985427|ref|XP_002675427.1| predicted protein [Naegleria gruberi]
gi|284089023|gb|EFC42683.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 156/298 (52%), Gaps = 2/298 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D + K +S + L SL IS + + D G + +++LT LN+
Sbjct: 24 MKQLISLNI-GKNEIGDEEAKLISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNICC 82
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ LS + L LN+ ++ D+G + S L SLN+ IG EG ++
Sbjct: 83 NRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISETRQLTSLNIGFTQIGGEGAKFIS 142
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L++SD +G G + +S + L S+N+S I D + ++ + L SLN+
Sbjct: 143 EMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDNLIGDEGAKLISEMKQLTSLNISN 202
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G+ ++ + LT LD+ +I D GA + K L SL I G + D G K +
Sbjct: 203 NQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLISEMKQLTSLNISGNRIGDEGAKSMS 262
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
++ L L++S N + D+ +LIS + L+SLN+ +RI G+++++ +K L SLT
Sbjct: 263 EMKQLKSLDISYN-QIGDEGTKLISEMKQLISLNIRANRIGDEGVKYIREMKQLTSLT 319
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 8/325 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+SG+ + D + + + L SL+ +I D + + + LTSL+ +N
Sbjct: 4 LTSLDISGNGIGDEAKL-ISEMKQLISLNIGKN-EIGDEEAKLISEMKQLTSLNIS-DNL 60
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWC-NCITDSDMKPL 176
I +G K + + L L++ C RI G L + +L SLNI C N I D K +
Sbjct: 61 IGDEGAKLISEMKQLTSLNI-CCNRIGVEGAKYLSEMKQLISLNI--CENEIGDEGAKLI 117
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L SL I +++ G ++ +++LT L++ + +S + L LN++
Sbjct: 118 SETRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNIS 177
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+ D+G + S + L SLN+ + IG EG+ ++ + L L++S+ Q+G G + +
Sbjct: 178 DNLIGDEGAKLISEMKQLTSLNISNNQIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLI 237
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S + L S+N+S I D + ++ + LKSL++ QI D G ++ + L L++
Sbjct: 238 SEMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDISYNQIGDEGTKLISEMKQLISLNIR 297
Query: 357 GARITDSGAAYLRNFKNLRSLEICG 381
RI D G Y+R K L SL G
Sbjct: 298 ANRIGDEGVKYIREMKQLTSLTYKG 322
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 140/275 (50%), Gaps = 8/275 (2%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT L++ G + +S + L LN+ + ++ D+ + S + L SLN+
Sbjct: 1 MKQLTSLDISGNGIGDEA-KLISEMKQLISLNIGKNEIGDEEAKLISEMKQLTSLNISDN 59
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IGDEG ++ + L L + ++G G ++LS + L S+N+ I D + ++
Sbjct: 60 LIGDEGAKLISEMKQLTSLNICCNRIGVEGAKYLSEMKQLISLNICENEIGDEGAKLISE 119
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L SLN+ QI G ++ + LT LD+ I GA ++ K L SL I
Sbjct: 120 TRQLTSLNIGFTQIGGEGAKFISEMKQLTSLDISDNLIGVEGAKFISEMKQLTSLNISDN 179
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ D G K I ++ LT LN+S N + + ++LIS + L SL++SN++I G + +
Sbjct: 180 LIGDEGAKLISEMKQLTSLNISNN-QIGGEGVKLISEMKQLTSLDISNNQIGDEGAKLIS 238
Query: 443 PLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+K L SL + ++ + +++K+L+S D+
Sbjct: 239 EMKQLTSLNISGNRIGDEGAKSMSEMKQLKSLDIS 273
>gi|168701995|ref|ZP_02734272.1| hypothetical protein GobsU_20883 [Gemmata obscuriglobus UQM 2246]
Length = 684
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 221/539 (41%), Gaps = 114/539 (21%)
Query: 30 DCALQDLCLGQYPGVNDKWMD---------VIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
D L DL +P + W+ +A + +L +DLSG+ VT GL HLK
Sbjct: 101 DAGLADL--NAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGL 158
Query: 81 -------SNLQSLDFNFCI---------------QISDGGLEHLRGLSNLTSLSFRRNNA 118
S D N C ++D GL HL L L +L R+ A
Sbjct: 159 KGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRA 218
Query: 119 ITA---------QGMKAFAGLINLVKLDLERCTR------------------IHGGLVNL 151
A G + + LD+ R I
Sbjct: 219 TPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLP 278
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+G + L +N+ + D D+ L+G T L L + ++VTD+ + YLK L +L L+L
Sbjct: 279 QGPLALARVNLS-DRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSL 337
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G VT A L + SL L+L+ ++++ G + L L ++LD G+ D GLV+
Sbjct: 338 TGTDVTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVH 397
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L GL +LK L LS T+V GL H L+++ L+ TG++D + L+ +L+ L
Sbjct: 398 LKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLGA 457
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-----------RNFK-NLRSLEI 379
D +TD G+A + LTGL L+L + D+G L RN K LR L
Sbjct: 458 DGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVTLRGLHA 517
Query: 380 --------------------------------CGGGLTDAGVKH--------IKDLSSLT 399
GG L +GV + K +T
Sbjct: 518 FHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVSGVPNEIVAAGELPKRKFVVT 577
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L+ ++D L + LTG+ L+++ S IT+ GL HLK L LR L L +VT
Sbjct: 578 ELALN-GLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLSETRVT 635
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 198/453 (43%), Gaps = 57/453 (12%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + L G+ VTD+GL HLK SNL L+ + ++D GL L LTSL + +
Sbjct: 64 ALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYS-GVTDAGLADLNAFPLLTSL-WVQGT 121
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ G+ L L +DL GL +LK + +TD+++ L
Sbjct: 122 TVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK--GLKGLTLLLSGTALTDANLCYLK 179
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----------AL 227
GLT + L +S + +TD+G+++L L+ L L++ T A L L +
Sbjct: 180 GLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKSVPGCRIRDSA 239
Query: 228 GSLFYLNLNRC------------------------------------------QLSDDGC 245
G L++NR + DD
Sbjct: 240 GDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDL 299
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ + T L L L + D L L L L+ L L+ T V +GL + +L ++
Sbjct: 300 GRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTL 359
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+LS T +++ L LAGL+ L ++LD ++D GL L LT L L L R+ G
Sbjct: 360 HLSSTKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLGPGL 419
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
A+ ++K L +L + G+TD H+ +L L + LTD + + LTGL+S
Sbjct: 420 AHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRHLG-ADGTGLTDAGMAHVRHLTGLIS 478
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LN+S++ + AGL L LT+ + KVT
Sbjct: 479 LNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVT 511
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 175/380 (46%), Gaps = 35/380 (9%)
Query: 54 SQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
QG +L V+LS V D L L C+ L L + +++D L +L+ L+ L LS
Sbjct: 278 PQGPLALARVNLSDRSVKDDDLGRLAGCTGLTELVLHET-RVTDAALGYLKNLARLQFLS 336
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+ +L L L + GLV+L GL L +++ ++D+
Sbjct: 337 LTGTD-VTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIHLD-GTGVSDAG 394
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L GLT+LK+L +S ++V G+A+ ++L L L VT LS +L +
Sbjct: 395 LVHLKGLTDLKTLGLSRTRVLGPGLAHTHSWKRLDALYLTNTGVTDEAFAHLSPHHTLRH 454
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L + L+D G LT L SLNL +GD GL+ L L + +T+V G
Sbjct: 455 LGADGTGLTDAGMAHVRHLTGLISLNLSDTAVGDAGLMQLGSNAGPTHLTVRNTKVTLRG 514
Query: 293 LRHLS---------------GLTNLESINLSFTGISDGSLRKLAGLSS------------ 325
L G T + + + G LR ++G+ +
Sbjct: 515 LHAFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLR-VSGVPNEIVAAGELPKRK 573
Query: 326 --LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L L+ ++DT LAAL LTG++ LDL G+ IT+ G A+L+ LR L +
Sbjct: 574 FVVTELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLSETR 633
Query: 384 LTDAGVKHIKDLSSLTLLNL 403
+TDAG+ IK L LT L+L
Sbjct: 634 VTDAGLDAIKAL-PLTELDL 652
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 156/366 (42%), Gaps = 76/366 (20%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ D+D+ L L + + +KVTD+G+A+LKGL L LNL VT A L L+A
Sbjct: 50 AVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVTDAGLADLNA 109
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN--------------- 271
L L + +SD G L L ++L + GL +
Sbjct: 110 FPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLKGLKGLTLLLSGTA 169
Query: 272 --------LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL--- 320
L GL + L LSDT + +GL HL L L ++++ T + SL +L
Sbjct: 170 LTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELHKS 229
Query: 321 -------------------------------------------------AGLSSLKSLNL 331
G +L +NL
Sbjct: 230 VPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQGPLALARVNL 289
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
R + D L L TGLT L L R+TD+ YL+N L+ L + G +TDAG+
Sbjct: 290 SDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLTGTDVTDAGLAR 349
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I++ SLT L+LS + +T+ L ++GL GL +++ + ++ AGL HLK L +L++L
Sbjct: 350 IRERKSLTTLHLS-STKVTNAGLVHLAGLAGLSHIHLDGTGVSDAGLVHLKGLTDLKTLG 408
Query: 452 LESCKV 457
L +V
Sbjct: 409 LSRTRV 414
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 130/487 (26%), Positives = 189/487 (38%), Gaps = 103/487 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ S VTD+GL L L SL + +SD GL R L LT +
Sbjct: 87 SNLAHLNLAYSGVTDAGLADLNAFPLLTSL-WVQGTTVSDAGLAVARELPALTHIDL-SG 144
Query: 117 NAITAQGMKA-----------------------FAGLINLVKLDLERCTRIHGGLVNLKG 153
+T G+ GL +V+L L GL +L
Sbjct: 145 TKVTGPGLAHLKGLKGLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHD 204
Query: 154 LMKLESLNIKWCNC----------------ITDS--DMKPL------------------- 176
L L +L+++ I DS D PL
Sbjct: 205 LKALGTLDVRKTRATPASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGV 264
Query: 177 --------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
G L + +S V D + L G LT L L VT A L
Sbjct: 265 SGQPRDIRAAADLPQGPLALARVNLSDRSVKDDDLGRLAGCTGLTELVLHETRVTDAALG 324
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L L L +L+L ++D G + +L +L+L S + + GLV+L GL L +
Sbjct: 325 YLKNLARLQFLSLTGTDVTDAGLARIRERKSLTTLHLSSTKVTNAGLVHLAGLAGLSHIH 384
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-LDARQITDTGL 341
L T V +GL HL GLT+L+++ LS T + GL+ S LDA +T+TG
Sbjct: 385 LDGTGVSDAGLVHLKGLTDLKTLGLSRTRVLG------PGLAHTHSWKRLDALYLTNTG- 437
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+TD A+L LR L G GLTDAG+ H++ L+ L L
Sbjct: 438 ------------------VTDEAFAHLSPHHTLRHLGADGTGLTDAGMAHVRHLTGLISL 479
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
NLS + D L + G L V N+++T GL R++T + ++ +
Sbjct: 480 NLSDTA-VGDAGLMQLGSNAGPTHLTVRNTKVTLRGLHAFHATGPWRTVTWDGGQLGPTE 538
Query: 462 IKRLQSR 468
R +R
Sbjct: 539 ADRSAAR 545
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 30/226 (13%)
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+D ++F+ L + +L + D L L L + L T+V +GL HL GL+
Sbjct: 32 ADLPADRFA----LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLS 87
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
NL +NL+++G++D L L L SL + ++D GLA L LTH+DL G ++
Sbjct: 88 NLAHLNLAYSGVTDAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKV 147
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
T G A+L +L + G LTDA + ++K GL
Sbjct: 148 TGPGLAHL-KGLKGLTLLLSGTALTDANLCYLK-------------------------GL 181
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
TG+V L++S++ +T AGL HL LK L +L + + T + L
Sbjct: 182 TGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRATPASLAELH 227
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 139/315 (44%), Gaps = 30/315 (9%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + ++ V D+ +A LK Q LT + L G VT A L L L +L +LNL ++
Sbjct: 41 LTAADLTDRAVADADLARLKDCQALTRIILHGTKVTDAGLAHLKGLSNLAHLNLAYSGVT 100
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D G + L SL + + D GL L L ++LS T+V GL HL
Sbjct: 101 DAGLADLNAFPLLTSLWVQGTTVSDAGLAVARELPALTHIDLSGTKVTGPGLAHLK-GLK 159
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
++ LS T ++D +L L GL+ + L+L +TD GL+ L L L LD+ R T
Sbjct: 160 GLTLLLSGTALTDANLCYLKGLTGVVELSLSDTPLTDAGLSHLHDLKALGTLDVRKTRAT 219
Query: 362 DSGAAYL-RNFKNLRSLEICG-----------------------GGLTDAGVKHIKDLS- 396
+ A L ++ R + G ++ DL
Sbjct: 220 PASLAELHKSVPGCRIRDSAGDRPPLDVNRLAAEWVLSVGGSVGVSGQPRDIRAAADLPQ 279
Query: 397 ---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+L +NLS ++ D L ++G TGL L + +R+T A L +LK L L+ L+L
Sbjct: 280 GPLALARVNLSDR-SVKDDDLGRLAGCTGLTELVLHETRVTDAALGYLKNLARLQFLSLT 338
Query: 454 SCKVTANDIKRLQSR 468
VT + R++ R
Sbjct: 339 GTDVTDAGLARIRER 353
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 30/210 (14%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G+ +TD+G+ H++ + L SL+ + + D GL L + T L+ R N +T +G+
Sbjct: 459 GTGLTDAGMAHVRHLTGLISLNLSDT-AVGDAGLMQLGSNAGPTHLTVR-NTKVTLRGLH 516
Query: 126 AF--AGLINLVKLD------------LERCTRIHGGLVNLKGL-----MKLESLNIKWCN 166
AF G V D R GG + + G+ E K+
Sbjct: 517 AFHATGPWRTVTWDGGQLGPTEADRSAARWALAAGGRLRVSGVPNEIVAAGELPKRKFVV 576
Query: 167 --------CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
++D+++ L LT + L ++ S +T+ G+A+LKGL L L L VT
Sbjct: 577 TELALNGLAVSDTELAALKYLTGMSRLDLAGSAITNDGLAHLKGLTGLRRLGLSETRVTD 636
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
A LD++ AL L L+L ++ G E F
Sbjct: 637 AGLDAIKAL-PLTELDLLGTAVTQKGAEGF 665
>gi|290973212|ref|XP_002669343.1| predicted protein [Naegleria gruberi]
gi|284082889|gb|EFC36599.1| predicted protein [Naegleria gruberi]
Length = 440
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 167/328 (50%), Gaps = 7/328 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ + +L SLNI + N I D ++K +S + L SL I ++V D G YL +++LT LN
Sbjct: 115 ISAMKQLTSLNI-YDNGIGDEEIKYISEMKQLTSLNIGYNRVGDEGAKYLSEMKQLTSLN 173
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ V LS + L LN+ ++ +G + S + L SLN+ + +EG
Sbjct: 174 IGYNRVGIEGAKYLSEMEQLTSLNIGYSRIGIEGVKYISEMKQLTSLNISKNEVSNEGAK 233
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L+ + L+ L + ++G G+++LS + L S+++ + I ++ ++ + L SL+
Sbjct: 234 YLSEMKQLRLLNIYHNEIGDEGVKYLSEMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLD 293
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ +I+D G L+ + LT L++ +RI G Y+ K L SL I + G K
Sbjct: 294 ISENEISDEGAKYLSEMEQLTSLNIDYSRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAK 353
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
I ++ L LL++S N ++D+ + +S + L+SL +S I G++++ +K LR L
Sbjct: 354 LISEMKQLRLLDISNN-EISDEGAKYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLL 412
Query: 451 TLESCKVTANDIKRLQSRDLPNLVSFRP 478
+T N I + ++ L + P
Sbjct: 413 D-----ITRNRIGKEGAKLLSEMKQLTP 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 157/300 (52%), Gaps = 2/300 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N + D K LS + L SL I ++V G YL +++LT LN+
Sbjct: 142 MKQLTSLNIGY-NRVGDEGAKYLSEMKQLTSLNIGYNRVGIEGAKYLSEMEQLTSLNIGY 200
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + +S + L LN+++ ++S++G + S + L LN+ IGDEG+ L+
Sbjct: 201 SRIGIEGVKYISEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNIYHNEIGDEGVKYLS 260
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L + ++G G++ +S + L S+++S ISD + L+ + L SLN+D
Sbjct: 261 EMKQLTSLHIGYNRIGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY 320
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I G+ ++ + LT L + RI GA + K LR L+I ++D G K++
Sbjct: 321 SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLLDISNNEISDEGAKYLS 380
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ L L +S+ + K ++ IS + L L+++ +RI G + L +K L L LE
Sbjct: 381 EMKQLISLYISE-IGIGIKGVKYISEMKQLRLLDITRNRIGKEGAKLLSEMKQLTPLCLE 439
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 117/249 (46%), Gaps = 27/249 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S ++V++ G +L + L+ L+ + +I D G+++L + LTSL
Sbjct: 212 SEMKQLTSLNISKNEVSNEGAKYLSEMKQLRLLNI-YHNEIGDEGVKYLSEMKQLTSLHI 270
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G+K + + L LD+ G L + +L SLNI +
Sbjct: 271 GYNR-IGLEGVKLISEMEQLTSLDISENEISDEGAKYLSEMEQLTSLNIDY--------- 320
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
S++ G+ Y+ +++LT L + + +S + L L
Sbjct: 321 ----------------SRIGLEGVKYISEMKQLTSLTIAYNRIGIKGAKLISEMKQLRLL 364
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+++ ++SD+G + S + L SL + GIG +G+ ++ + L+ L+++ ++G G
Sbjct: 365 DISNNEISDEGAKYLSEMKQLISLYISEIGIGIKGVKYISEMKQLRLLDITRNRIGKEGA 424
Query: 294 RHLSGLTNL 302
+ LS + L
Sbjct: 425 KLLSEMKQL 433
>gi|430746590|ref|YP_007205719.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
gi|430018310|gb|AGA30024.1| hypothetical protein Sinac_5908 [Singulisphaera acidiphila DSM
18658]
Length = 506
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 193/413 (46%), Gaps = 50/413 (12%)
Query: 47 KWM-DVIASQ-GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------ISDGG 98
KWM D ++++V L G +V D L++ L +++ F IQ ++ G
Sbjct: 112 KWMRDAFGPDLFDTVVNVHLEGDNVDDE---LLENVGKLHGVEW-FTIQGHAAPNLTPAG 167
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ LR LS L LS R F T HG L L G +L
Sbjct: 168 MAQLRTLSRLKGLSVR-----------GF--------------TDSHGFLAGLMGKTRLS 202
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT- 217
L + +TD +M + GLT+L+ LQ+ VTD G A++ L++L+LL++ G +T
Sbjct: 203 HLRLPEA-AVTDDEMAIIGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRITD 261
Query: 218 -AACLD--SLSALG-SLFYLNLNRCQLSDDGCEKFSRL---TNLESLNLDSCGIGDEGLV 270
A D L LG S R S G L TNL L L + I D L
Sbjct: 262 LAPVTDLVQLDVLGLSPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELA 321
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSL 329
GL L L + ++ +GL L+ +L + + T I+D LR L+ L +L L
Sbjct: 322 VAAGLPKLSYLMIGGRRITEAGLARLAESKSLTGLRFTDTSIAD--LRPLSPRLHALWGL 379
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
++ +TD GL L+ T + L + G+R+TD+G +L +L L + +TDAG+
Sbjct: 380 YMENSALTDAGLEPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGL 439
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+K L SL L+L++ LTD ++E ++G L SLN+ S I+ AG+ LK
Sbjct: 440 GRLKSLKSLETLSLTE-TKLTDSSVETLAGFQSLKSLNLDRSGISPAGIERLK 491
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 20/293 (6%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ +T +G+A L+ L +L L++ G + L L L +L L ++DD
Sbjct: 159 AAPNLTPAGMAQLRTLSRLKGLSVRGFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAI 218
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
LT+LE L LD + D G ++ L L L++ ++ + L ++ L L+ + L
Sbjct: 219 IGGLTDLEVLQLDGRNVTDRGFAHVANLKELSLLDMPGVRI--TDLAPVTDLVQLDVLGL 276
Query: 308 SFTGIS----------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
S + SL L GL++L L L A QI D LA L L++L + G
Sbjct: 277 SPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIEDRELAVAAGLPKLSYLMIGG 336
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL--TLLNLS-QNCNLTDKTL 414
RIT++G A L K+L L TD + ++ LS L L +N LTD L
Sbjct: 337 RRITEAGLARLAESKSLTGLR-----FTDTSIADLRPLSPRLHALWGLYMENSALTDAGL 391
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
E +S T + L ++ SR+T AGL HL PL +L L L +T + RL+S
Sbjct: 392 EPLSDATRIGDLTITGSRMTDAGLHHLAPLPSLWKLRLGRSAITDAGLGRLKS 444
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 153/336 (45%), Gaps = 53/336 (15%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSD--MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
G+ L+ L +L+ L+++ TDS + L G T L L++ + VTD +A + GL
Sbjct: 167 GMAQLRTLSRLKGLSVR---GFTDSHGFLAGLMGKTRLSHLRLPEAAVTDDEMAIIGGLT 223
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCG 263
L +L L+G VT D G F+ + NL+ L+L D G
Sbjct: 224 DLEVLQLDGRNVT------------------------DRG---FAHVANLKELSLLDMPG 256
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQV----------GSSGLRHLSGLTNLESINLSFTGIS 313
+ L +T L L L LS + G S L L GLTNL + L T I
Sbjct: 257 VRITDLAPVTDLVQLDVLGLSPDRATFARSVPSPGGPSSLGPLRGLTNLTQLTLGATQIE 316
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR---- 369
D L AGL L L + R+IT+ GLA L LT G R TD+ A LR
Sbjct: 317 DRELAVAAGLPKLSYLMIGGRRITEAGLARLAESKSLT-----GLRFTDTSIADLRPLSP 371
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L L + LTDAG++ + D + + L ++ +TD L ++ L L L +
Sbjct: 372 RLHALWGLYMENSALTDAGLEPLSDATRIGDLTIT-GSRMTDAGLHHLAPLPSLWKLRLG 430
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S IT AGL LK LK+L +L+L K+T + ++ L
Sbjct: 431 RSAITDAGLGRLKSLKSLETLSLTETKLTDSSVETL 466
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLS--FRRNNAIT 120
+ G +T++GL L + +L L F +D + LR LS L +L + N+A+T
Sbjct: 334 IGGRRITEAGLARLAESKSLTGLRF------TDTSIADLRPLSPRLHALWGLYMENSALT 387
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G++ L TRI G + + G + +TD+ + L+ L
Sbjct: 388 DAGLEP-----------LSDATRI--GDLTITG------------SRMTDAGLHHLAPLP 422
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L L++ S +TD+G+ LK L+ L L+L +T + +++L+ SL LNL+R +
Sbjct: 423 SLWKLRLGRSAITDAGLGRLKSLKSLETLSLTETKLTDSSVETLAGFQSLKSLNLDRSGI 482
Query: 241 SDDGCEKFSR 250
S G E+ +
Sbjct: 483 SPAGIERLKQ 492
>gi|217074836|gb|ACJ85778.1| unknown [Medicago truncatula]
Length = 81
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLESCKVTAN
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTAN 62
Query: 461 DIKRLQSRDLPNLVSFRPE 479
DIK+ + LPNLVSFRPE
Sbjct: 63 DIKKFKLIHLPNLVSFRPE 81
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LN+ + +TD ++ ++GLT L SL +S +++T +G+ +LK L+ L L LE C VTA
Sbjct: 3 LNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+TD + + LT L L+L RIT +G +L+ KNLRSL + +T +K K
Sbjct: 11 LTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTANDIKKFK 68
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQI 94
L L Q + DK +++IA ++L+S++LS + +T +GL HLK NL+SL C +
Sbjct: 3 LNLSQNSNLTDKTVELIAGL-TALVSLNLSNTRITSAGLQHLKTLKNLRSLTLESCKVTA 61
Query: 95 SDGGLEHLRGLSNLTSLSFR 114
+D L L NL +SFR
Sbjct: 62 NDIKKFKLIHLPNL--VSFR 79
>gi|417301579|ref|ZP_12088730.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327542171|gb|EGF28664.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 442
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 153/320 (47%), Gaps = 5/320 (1%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 105 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 162
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM + A + L+ + LE+ GLV L L L+S+N
Sbjct: 163 LTGLSKLRAIDLRNTN-IGDAGMDSLAKIKTLIDVQLEKSKVTDEGLVKLAPL-PLKSIN 220
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+C I MK L L+ LQ SK+ D+ +A LKGL KL L + GC VT +
Sbjct: 221 FNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSKLKRLRIRGCDVTGEGI 280
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNLKC 280
++ +L L + DDG + S+L + +++ C + EG+ L L L
Sbjct: 281 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGKLTGLTY 340
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +T+ L L NLE +NL T ++D SL L ++ LK+LN+ Q+ D
Sbjct: 341 LGLWETKTNDETLAGFGDLVNLEELNLKSTAVTDESLPVLMKMTKLKTLNVAGTQLGDDS 400
Query: 341 LAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 401 FLELAKLPNLKSMNVANTSI 420
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 159/353 (45%), Gaps = 29/353 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N+ S + ++ +G+ N K G+ NL L KL+ L +
Sbjct: 71 NVVEFSIANQKGGIEESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADT- 129
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
ITD +K L +++ L + + VTD G+ L GL KL ++L + A +DSL+
Sbjct: 130 AITDETLKTAGKLDSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAK 189
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC------------------------ 262
+ +L + L + +++D+G K + L L+S+N + C
Sbjct: 190 IKTLIDVQLEKSKVTDEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDY 248
Query: 263 -GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
I D + L GL LK L + V G++H++G L L + + D L+ ++
Sbjct: 249 SKINDASMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVIS 308
Query: 322 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L ++ +++ + R + G+A L LTGLT+L L+ + D A + NL L +
Sbjct: 309 QLPAVTYVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLK 368
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+TD + + ++ L LN++ L D + ++ L L S+NV+N+ I
Sbjct: 369 STAVTDESLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNVANTSI 420
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 144/291 (49%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
+ L L R ++D+G E + L+ L +++L + IGD G+ +L + L ++L ++V
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL L+ L L+SIN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 205 DEGLVKLAPLP-LKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLS 263
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 264 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CR 322
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 323 LASPEGIAQLGKLTGLTYLGLWETKTNDETLAGFGDLVNLEELNLKSTAVT 373
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 25/244 (10%)
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
++ + S + N + GI D G+ NLT L LK L L+DT + L+ L +
Sbjct: 85 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 144
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
++ + L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 145 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVT 204
Query: 362 DSGAAYLR-------NFK--------------NLRSLEICGGG---LTDAGVKHIKDLSS 397
D G L NF +LE G + DA + +K LS
Sbjct: 205 DEGLVKLAPLPLKSINFNYCTTINGPTMKMLGQTPTLEYLQGDYSKINDASMAELKGLSK 264
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 265 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 323
Query: 458 TAND 461
+ +
Sbjct: 324 ASPE 327
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L+ + T G I D+G L + L+ L + +TD +K L S+
Sbjct: 88 LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 147
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L + +TD+ LEL++GL+ L ++++ N+ I AG+ L +K L + LE KVT
Sbjct: 148 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDSLAKIKTLIDVQLEKSKVTDE 206
Query: 461 DIKRL 465
+ +L
Sbjct: 207 GLVKL 211
>gi|149174591|ref|ZP_01853217.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
gi|148846701|gb|EDL61038.1| hypothetical protein PM8797T_09969 [Planctomyces maris DSM 8797]
Length = 346
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 1/233 (0%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ T A L +++ L SL L+ + ++D F L NLE+L L+ IGD GL +
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L LK L L +T V GL +L LT L +NLS T ISD L L G+ +L++L L
Sbjct: 158 LRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYL 217
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
DA Q++D GL L L L LDL A +TD+G +L +NL+ L + ++D G+ +
Sbjct: 218 DATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVY 277
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ L L L++ + N +D L + GL L LN +++IT AG L
Sbjct: 278 LGKLKELHELDI-RYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 2/224 (0%)
Query: 150 NLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+L + +L+SL I + ITDSDM GL NL++L + + + D+G+ +L+ L+KL
Sbjct: 106 DLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHLRDLRKLK 165
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
+L L VT L L L L YLNL+ ++SD G + NL++L LD+ + D
Sbjct: 166 VLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLDATQVSDR 225
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GL+ L L L+ L+L D +V +GL HLS NL+ + L+ T ISD L L L L
Sbjct: 226 GLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELH 285
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
L++ +D GL L L L +L+ +ITD+G L F
Sbjct: 286 ELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRLHEF 329
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 120/243 (49%), Gaps = 8/243 (3%)
Query: 161 NIKWCNCI--------TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N+ W + + T++D+ ++ L +LK L S S +TDS ++Y +GL L L LE
Sbjct: 87 NVTWISSVGYGDDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILE 146
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ A L L L L L L ++D G LT L LNL I D GL++L
Sbjct: 147 RTSIGDAGLYHLRDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHL 206
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
G+ NL+ L L TQV GL +L L LE+++L ++D L L+ +LK L L
Sbjct: 207 KGMLNLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLA 266
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QI+D GL L L L LD+ +D+G +L+ K+L L +TDAG +
Sbjct: 267 DTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGYTRL 326
Query: 393 KDL 395
+
Sbjct: 327 HEF 329
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 30/258 (11%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
D+ F ++ L + L +L L F ++ IT M F GL NL L LER +
Sbjct: 99 DYEF----TEADLAAIAQLKSLKILDFS-SSLITDSDMSYFQGLYNLEALILERTSIGDA 153
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L+ L KL+ L + W +TD + L LT L L +S +K++D+G+ +LKG
Sbjct: 154 GLYHLRDLRKLKVLRL-WETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKG---- 208
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+LNL+ L L+ Q+SD G L LE+L+L + D
Sbjct: 209 -MLNLQT-------------------LYLDATQVSDRGLIYLKELPKLETLDLLDAEVTD 248
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
GLV+L+ NLK L L+DTQ+ GL +L L L +++ +T SD L L GL SL
Sbjct: 249 AGLVHLSECRNLKKLTLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSL 308
Query: 327 KSLNLDARQITDTGLAAL 344
LN ++ +ITD G L
Sbjct: 309 AYLNWESTKITDAGYTRL 326
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 109/243 (44%), Gaps = 27/243 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q SL +D S S +TDS + + + NL++L I D GL HLR L L L
Sbjct: 111 AQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERT-SIGDAGLYHLRDLRKLKVLRL 169
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ +T G+ L L L+L GL++LKG++
Sbjct: 170 WETD-VTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGML------------------ 210
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL++L + ++V+D G+ YLK L KL L+L VT A L LS +L L
Sbjct: 211 -------NLQTLYLDATQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKL 263
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
L Q+SD G +L L L++ D GLV+L GL +L L T++ +G
Sbjct: 264 TLADTQISDQGLVYLGKLKELHELDIRYTNTSDAGLVHLQGLKSLAYLNWESTKITDAGY 323
Query: 294 RHL 296
L
Sbjct: 324 TRL 326
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
D + T+ LAA+ L L LD + ITDS +Y + NL +L + + DAG+ H
Sbjct: 98 DDYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYH 157
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
++DL L +L L + ++TD L + LT L LN+S ++I+ AGL HLK + NL++L
Sbjct: 158 LRDLRKLKVLRLWE-TDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLY 216
Query: 452 LESCKVTANDIKRLQSRDLPNL 473
L++ +V+ + L ++LP L
Sbjct: 217 LDATQVSDRGLIYL--KELPKL 236
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
D + + L ++ L +L+ ++ S + I+D + GL +L++L L+ I D GL L
Sbjct: 99 DYEFTEADLAAIAQLKSLKILDFSSSLITDSDMSYFQGLYNLEALILERTSIGDAGLYHL 158
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L L L L+ +TD G +YL++ L L + ++DAG+ H+K + +L L L
Sbjct: 159 RDLRKLKVLRLWETDVTDVGLSYLKDLTELTYLNLSETKISDAGLIHLKGMLNLQTLYLD 218
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++D+ L + L L +L++ ++ +T AGL HL +NL+ LTL +++
Sbjct: 219 A-TQVSDRGLIYLKELPKLETLDLLDAEVTDAGLVHLSECRNLKKLTLADTQIS 271
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++DL ++VTD+GL+HL +C NL+ L QISD GL +L L L L R N
Sbjct: 238 TLDLLDAEVTDAGLVHLSECRNLKKLTLA-DTQISDQGLVYLGKLKELHELDIRYTNTSD 296
Query: 121 AQGMKAFAGLINLVKLDLERC-------TRIHGGLVNLKGLMKLESLNIK 163
A G+ GL +L L+ E TR+H L L + ++ K
Sbjct: 297 A-GLVHLQGLKSLAYLNWESTKITDAGYTRLHEFLPKLSRTQQFPTIIFK 345
>gi|290993192|ref|XP_002679217.1| predicted protein [Naegleria gruberi]
gi|284092833|gb|EFC46473.1| predicted protein [Naegleria gruberi]
Length = 310
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 173/352 (49%), Gaps = 53/352 (15%)
Query: 105 LSNLTSLSFR-RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNI 162
LSN ++ +N+ IT + K L NL KLD+ + +V L L +L LNI
Sbjct: 9 LSNFIFATYAGKNSEITVELAKCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNI 68
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
++C+ I ++K L+ L L SL I +++ G KL
Sbjct: 69 RYCD-IGVEEVKYLTKLDKLHSLDIGINQIYADG-------AKL---------------- 104
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
LS + SL L++ C++ D+GC+ + L L LN++ GIG G + + NLK L+
Sbjct: 105 -LSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGGANCIGQMRNLKSLD 163
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+S+ G+ G + +S L+ LE +N+S++ I + + +L L +L SL++ +ITD G
Sbjct: 164 ISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQLRKLKNLTSLSIHHNEITDEGTK 223
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
+ L LTHLD+ +I GA K I ++S LT LN
Sbjct: 224 YIVELDQLTHLDISNNQIETEGA------------------------KSISEMSQLTSLN 259
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLE 453
+S N + D+ + IS L L SLNVS R++ G+ + K LK+L++L +E
Sbjct: 260 ISSNI-IGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIRKQLKHLKTLEVE 310
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 149/307 (48%), Gaps = 27/307 (8%)
Query: 174 KPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K + L NLK L +S + + + + + L++L LN+ C + + L+ L L
Sbjct: 30 KCICQLKNLKKLDVSYNYHLENEVVELISELRELRELNIRYCDIGVEEVKYLTKLDKLHS 89
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L++ Q+ DG + S + +L L++ C IGDEG ++T L L L ++ +G G
Sbjct: 90 LDIGINQIYADGAKLLSTMKSLTKLDVAECEIGDEGCQSITELYQLTDLNINGDGIGVGG 149
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ + NL+S+++S + + ++ LS L+ LN+ I + G+ L
Sbjct: 150 ANCIGQMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYSDIDEVGVYQL-------- 201
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
R KNL SL I +TD G K+I +L LT L++S N + +
Sbjct: 202 ----------------RKLKNLTSLSIHHNEITDEGTKYIVELDQLTHLDISNN-QIETE 244
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+ IS ++ L SLN+S++ I G +++ LK L SL + C+V+ ++ ++ + L +
Sbjct: 245 GAKSISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESIR-KQLKH 303
Query: 473 LVSFRPE 479
L + E
Sbjct: 304 LKTLEVE 310
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 27/170 (15%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q +L S+D+S + + G + + S L+ L+ ++ I + G+ LR L NLTSLS
Sbjct: 155 QMRNLKSLDISNNFFGNYGAKSISELSQLEILNVSYS-DIDEVGVYQLRKLKNLTSLSI- 212
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N IT +G K L L LD+ N I K
Sbjct: 213 HHNEITDEGTKYIVELDQLTHLDISN-------------------------NQIETEGAK 247
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+S ++ L SL IS + + D G Y+ L+KLT LN+ C V+ ++S+
Sbjct: 248 SISEMSQLTSLNISSNIIGDEGAQYISHLKKLTSLNVSKCRVSEEGVESI 297
>gi|46447569|ref|YP_008934.1| hypothetical protein pc1935 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401210|emb|CAF24659.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 504
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 156/301 (51%), Gaps = 35/301 (11%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL +L FR+ +TA G+ L+ L LDL C
Sbjct: 227 IEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCY 286
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS--CS-KVTDSGIA 198
+ GL +L L+ L+ LN+ +TD+ + LS LT L+ L +S C+ K+TD+G+A
Sbjct: 287 NLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGLA 346
Query: 199 YLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-----QLSDDGCEKFSRLT 252
+L+ L L LNL C T A L L L +L +LNL+ C L+ G LT
Sbjct: 347 HLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLT 406
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG 311
L+ LNL CG+ D+ L +LT L L+ L+LS+ + +GL HL+ L L+ +NLS
Sbjct: 407 ALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLS--- 463
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRN 370
Q+T+ GLA L LT L HL+L G + +TD G A LR
Sbjct: 464 --------------------KCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRP 503
Query: 371 F 371
F
Sbjct: 504 F 504
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 145/273 (53%), Gaps = 14/273 (5%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K+E+LN +TD + L NLK+L C +T +G+AYL+ L L L+L C
Sbjct: 226 KIEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYC 285
Query: 215 P-VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSC---GIGDEGL 269
+T A L L+ L +L +LNL+ L+D G S LT L+ LNL C + D GL
Sbjct: 286 YNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLSECCNYKLTDAGL 345
Query: 270 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAGL 323
+L L LK L LS ++ +GL HL LT L+ +NLS G++ L L L
Sbjct: 346 AHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPL 405
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG- 381
++L+ LNL +TD LA LT L L +LDL +TD+G A+L L+ L +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
LT+AG+ H+ L++L LNLS NLTD L
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGL 498
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 144/291 (49%), Gaps = 36/291 (12%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +TD + LK + L L CP +TAA L L L +L +L+LN C L+D G
Sbjct: 236 AYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAH 295
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ L L+ LNL G L+D +GL HLS LT L+ +NL
Sbjct: 296 LAPLVALKHLNLSGHGY------------------LTD-----AGLAHLSPLTALQHLNL 332
Query: 308 SF---TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-----FGA 358
S ++D L L L +LK LNL + T GLA L LT L HL+L GA
Sbjct: 333 SECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGA 392
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ +G A+LR L+ L + G+TD + H+ L +L L+LS +LTD L ++
Sbjct: 393 GLASAGLAHLRPLTALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLN 452
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
L L LN+S ++T+AGL HL PL L+ L L C +T + + RL+
Sbjct: 453 PLIALQHLNLSKCDQLTNAGLAHLIPLTALQHLNLSGCSNLTDDGLARLRP 503
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 126/251 (50%), Gaps = 32/251 (12%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL +L+ LQ LD N+C ++D GL HL L L L+ + +T G+
Sbjct: 261 PNLTAAGLAYLRPLVALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAH 320
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
+ L L L+L C CN +TD+ + L L LK L
Sbjct: 321 LSPLTALQHLNLSEC-----------------------CNYKLTDAGLAHLRPLVALKYL 357
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-----PVTAACLDSLSALGSLFYLNLNRCQ 239
+S CSK T +G+A+L+ L L LNL GC + +A L L L +L +LNL+ C
Sbjct: 358 NLSRCSKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCG 417
Query: 240 LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 297
++DD + L L+ L+L +C + D GL +L L L+ L LS Q+ ++GL HL
Sbjct: 418 VTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLI 477
Query: 298 GLTNLESINLS 308
LT L+ +NLS
Sbjct: 478 PLTALQHLNLS 488
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 35/233 (15%)
Query: 247 KFSRLTN-----LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 299
+F R+ N +E+LN + + D L+ L NLK L + ++GL +L L
Sbjct: 215 EFERIINRFSKKIEALNFSNQAYLTDVHLLALKDCKNLKALYFRKCPNLTAAGLAYLRPL 274
Query: 300 TNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFG 357
L+ ++L++ ++D L LA L +LK LNL +TD GLA L+ LT L HL+L
Sbjct: 275 VALQHLDLNYCYNLTDAGLAHLAPLVALKHLNLSGHGYLTDAGLAHLSPLTALQHLNLS- 333
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
E C LTDAG+ H++ L +L LNLS+ T L +
Sbjct: 334 --------------------ECCNYKLTDAGLAHLRPLVALKYLNLSRCSKFTGAGLAHL 373
Query: 418 SGLTGLVSLNVSN-----SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LT L LN+S + + SAGL HL+PL L+ L L C VT +++ L
Sbjct: 374 RPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSWCGVTDDELAHL 426
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQ 122
S T +GL HL+ + LQ L+ + C I G GL HLR L+ L L+ +T
Sbjct: 363 SKFTGAGLAHLRPLTALQHLNLSGCGGIGAGLASAGLAHLRPLTALQHLNLSW-CGVTDD 421
Query: 123 GMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L L LDL C + GL +L L+ L+ LN+ C+ +T++ + L LT
Sbjct: 422 ELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKCDQLTNAGLAHLIPLTA 481
Query: 182 LKSLQIS-CSKVTDSGIAYLKGL 203
L+ L +S CS +TD G+A L+
Sbjct: 482 LQHLNLSGCSNLTDDGLARLRPF 504
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++LS VTD L HL LQ LD + C ++D GL HL L L L+ +
Sbjct: 406 TALQHLNLSWCGVTDDELAHLTPLEALQYLDLSNCWHLTDAGLAHLNPLIALQHLNLSKC 465
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L L L+L C+ +
Sbjct: 466 DQLTNAGLAHLIPLTALQHLNLSGCSNL 493
>gi|449132603|ref|ZP_21768618.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448888282|gb|EMB18604.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 455
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 152/320 (47%), Gaps = 5/320 (1%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S + L + LS + +TD + + L+ L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-TKLERLILSDTAITDRTIETAGKMNTLEVL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R N I GM A + L + LE+ GLV L L L+ +N
Sbjct: 176 LTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKLAPL-PLKYIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+C I MK L L+ LQ SK+ D+ +A LKGL KLT L + GC VT +
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGI 293
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNLKC 280
++ +L L + D G E S+L + +++ C + EG+ L L L
Sbjct: 294 KHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTY 353
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +T+ + L L NLE +NL T ++D SL L ++ LK+LN+ Q+ D
Sbjct: 354 LGLWETKTNDATLEAFGELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVAGTQLGDDS 413
Query: 341 LAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 147/291 (50%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ M+ LSG+ N + + D+G+ L L KL L L +T +++ + +
Sbjct: 98 EESMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITDRTIETAGKMNT 157
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L L R ++D+G E + L+ L +++L + IGD G+ L + L ++L ++V
Sbjct: 158 LEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTNIGDAGMDPLAKIKTLADVQLEKSKVT 217
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL L+ L L+ IN ++ T I+ +++ L +L+ L D +I D +A L L+
Sbjct: 218 DEGLVKLAPLP-LKYINFNYCTTINGPTMKMLGQTPTLERLQGDYSKINDASMAELKGLS 276
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LTHL + G +T G ++ N K L E+ + D G++ I L ++T +++S+ C
Sbjct: 277 KLTHLRIRGCDVTGEGIKHIANNKALAKFELRDSSVDDKGLEVISQLPAVTHVDISE-CR 335
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ A L L NL L L+S VT
Sbjct: 336 LASPEGIAQLGKLTGLTYLGLWETKTNDATLEAFGELVNLEELNLKSTSVT 386
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 157/365 (43%), Gaps = 31/365 (8%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ + HL N FN I D G+E+L L+ L L + AIT + ++ +
Sbjct: 98 EESMQHLSGIPNTLIATFN-GPGIDDAGMENLTSLTKLERLILS-DTAITDRTIETAGKM 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L L L R GL L GL KL +++++ N I D+ M PL+ + L +Q+ S
Sbjct: 156 NTLEVLFLRRTGVTDEGLELLTGLSKLRAIDLRNTN-IGDAGMDPLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-S 249
KVTD G+ L L L Y+N N C + K
Sbjct: 215 KVTDEGLVKLAPL-------------------------PLKYINFNYCTTINGPTMKMLG 249
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+ LE L D I D + L GL L L + V G++H++ L L
Sbjct: 250 QTPTLERLQGDYSKINDASMAELKGLSKLTHLRIRGCDVTGEGIKHIANNKALAKFELRD 309
Query: 310 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ + D L ++ L ++ +++ + R + G+A L LTGLT+L L+ + D+
Sbjct: 310 SSVDDKGLEVISQLPAVTHVDISECRLASPEGIAQLGKLTGLTYLGLWETKTNDATLEAF 369
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
NL L + +TD + + ++ L LN++ L D + ++ L L S+NV
Sbjct: 370 GELVNLEELNLKSTSVTDQSLPVLMKMTKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNV 428
Query: 429 SNSRI 433
+N+ I
Sbjct: 429 ANTSI 433
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
GI + S++ L+G+ + + I D G+ LTSLT L L L ITD
Sbjct: 96 GIEE-SMQHLSGIPNTLIATFNGPGIDDAGMENLTSLTKLERLILSDTAITD-------- 146
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
R++E G +++L +L L + +TD+ LEL++GL+ L ++++ N
Sbjct: 147 ----RTIETAG------------KMNTLEVLFL-RRTGVTDEGLELLTGLSKLRAIDLRN 189
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ I AG+ L +K L + LE KVT + +L
Sbjct: 190 TNIGDAGMDPLAKIKTLADVQLEKSKVTDEGLVKL 224
>gi|290996081|ref|XP_002680611.1| predicted protein [Naegleria gruberi]
gi|284094232|gb|EFC47867.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 152/295 (51%), Gaps = 7/295 (2%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ K ++ + L SL IS +++ D G Y+ +++LT L++ + +S + L
Sbjct: 118 EAKFITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLT 177
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
LN++ +SD+G + S + L SL++ IGDEG + + L L +S +
Sbjct: 178 SLNISYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDE 237
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G + +S + L S+++ F IS + ++ + L SL++ +I D G+ L+ + LT
Sbjct: 238 GAKFISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLT 297
Query: 352 HLDLFGARIT------DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L + G IT + GA ++ K L SL+I ++D G K+I ++ LT LN+S
Sbjct: 298 SLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISY 357
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
N ++ + + IS + L SL++ ++RI G +++ +K L SL + + +N
Sbjct: 358 NS-ISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQFNSN 411
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 133/258 (51%), Gaps = 11/258 (4%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ + L L+++ Q+ D+G + S + L SL++ IGDEG ++ + L L +
Sbjct: 122 ITEMKQLTSLDISENQIGDEGAKYISEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNI 181
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + G + +S + L S+++ I D + + + L SLN+ I+D G
Sbjct: 182 SYNAISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISYNSISDEGAKF 241
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I+ GA ++ K L SL+I + D GVK++ ++ LT L +
Sbjct: 242 ISEMKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTI 301
Query: 404 SQN----CN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
S N CN ++++ + IS + L SL++S + I+ G +++ +K L SL + ++
Sbjct: 302 SGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSIS 361
Query: 459 A------NDIKRLQSRDL 470
+++K+L S D+
Sbjct: 362 GEGAKFISEMKQLTSLDI 379
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 142/284 (50%), Gaps = 9/284 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+S + + D G ++ + L SLD + I+I D G +++ + LTSL+ NA
Sbjct: 128 LTSLDISENQIGDEGAKYISEMRQLTSLDIS-DIEIGDEGAKYISEMKQLTSLNISY-NA 185
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I+ +G K + + L+ L + + G ++ + +L SLNI + N I+D K +S
Sbjct: 186 ISDEGAKFISEMKQLMSLHIYKNLIGDEGAKYIREMKQLTSLNISY-NSISDEGAKFISE 244
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-- 236
+ L SL I ++++ G ++ +++LT L++ + + LS + L L ++
Sbjct: 245 MKQLTSLDIVFNEISGEGAKFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGN 304
Query: 237 ---RC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
C Q+S++G + S + L SL++ I DEG ++ + L L +S + G
Sbjct: 305 EITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEG 364
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+ +S + L S+++ I D + ++ + L SLN+ Q
Sbjct: 365 AKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDNQF 408
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 129/261 (49%), Gaps = 9/261 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S ++ D G ++ + L SL+ ++ ISD G + + + L SL
Sbjct: 147 SEMRQLTSLDISDIEIGDEGAKYISEMKQLTSLNISYN-AISDEGAKFISEMKQLMSLHI 205
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ N I +G K + L L++ + G + + +L SL+I + N I+
Sbjct: 206 YK-NLIGDEGAKYIREMKQLTSLNISYNSISDEGAKFISEMKQLTSLDIVF-NEISGEGA 263
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT------AACLDSLSAL 227
K +S + L SL IS +++ D G+ YL +++LT L + G +T +S +
Sbjct: 264 KFISEMKQLTSLDISDNEIGDEGVKYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEM 323
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L+++ +SD+G + S + L SLN+ I EG ++ + L L++ +
Sbjct: 324 KQLTSLDISYNLISDEGAKYISEMKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNR 383
Query: 288 VGSSGLRHLSGLTNLESINLS 308
+G G +++S + L S+N+S
Sbjct: 384 IGDEGAKYISEMKQLTSLNIS 404
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 11/244 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++S + ++D G + + L SL + I D G +++R + LTSL+
Sbjct: 171 SEMKQLTSLNISYNAISDEGAKFISEMKQLMSLHI-YKNLIGDEGAKYIREMKQLTSLNI 229
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITD-- 170
N +I+ +G K + + L LD+ I G G + + +L SL+I N I D
Sbjct: 230 SYN-SISDEGAKFISEMKQLTSLDI-VFNEISGEGAKFISEMKQLTSLDIS-DNEIGDEG 286
Query: 171 ----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
S+MK L+ LT + C+++++ G ++ +++LT L++ ++ +S
Sbjct: 287 VKYLSEMKQLTSLTISGNEITYCNQISEEGAKFISEMKQLTSLDISYNLISDEGAKYISE 346
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+ L LN++ +S +G + S + L SL++ S IGDEG ++ + L L +SD
Sbjct: 347 MKQLTSLNISYNSISGEGAKFISEMKQLTSLDIVSNRIGDEGAKYISEMKQLTSLNISDN 406
Query: 287 QVGS 290
Q S
Sbjct: 407 QFNS 410
>gi|290993162|ref|XP_002679202.1| predicted protein [Naegleria gruberi]
gi|284092818|gb|EFC46458.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 8/338 (2%)
Query: 122 QGMKAFAGLINLVKLDLERC-TRIHGGLVNLKGLMKLE-SLNIKWCNCITDSDMKPLSGL 179
Q K GL L +L + R G + LK L L N WC T +K L
Sbjct: 14 QDAKYIGGLKQLTRLTIYSSHIRDIGKISELKQLTYLNVPANGIWC--YTTKQVKEFKQL 71
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T +L I ++V G Y+ L++LT L+++ + ++ LS L L YLN++
Sbjct: 72 T---TLIIDQNQVGSEGCKYISELKQLTSLSIDENFIYDEGVEYLSELAQLTYLNISNNG 128
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+ +GC+ ++ L SL + IG EG ++ L LK L++S T +G GL H+ L
Sbjct: 129 VGSEGCKYVGKMKRLTSLGFYNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQL 188
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
+ L S++L I +G + L+ L L LN+ I + G+ + L L +L + R
Sbjct: 189 SQLTSLDLYCNKIGNGGAKYLSELKQLTYLNISENHIGNEGIKYIGELKQLVNLIINNNR 248
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I + G Y+ K L L I + + G+K+I DL LT + +S+N + + + I
Sbjct: 249 IGNDGVKYIGELKQLTYLNISENRIGNEGIKYIGDLKQLTNIIISRNW-IGSEGAKYIGK 307
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L+ L SL +S++ I + G ++L LK L L +E K+
Sbjct: 308 LSQLTSLGLSSNNIDNEGAKYLSELKELSFLNIERNKI 345
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 10/200 (5%)
Query: 48 WMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ + I +G+ +S +D+S +++ D GL H+ S L SLD +C +I +GG +
Sbjct: 149 YNNRIGKEGAKYISTLNQLKQLDISRTNIGDKGLEHIGQLSQLTSLDL-YCNKIGNGGAK 207
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L L LT L+ N+ I +G+K L LV L + + G+ + L +L L
Sbjct: 208 YLSELKQLTYLNISENH-IGNEGIKYIGELKQLVNLIINNNRIGNDGVKYIGELKQLTYL 266
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
NI N I + +K + L L ++ IS + + G Y+ L +LT L L +
Sbjct: 267 NIS-ENRIGNEGIKYIGDLKQLTNIIISRNWIGSEGAKYIGKLSQLTSLGLSSNNIDNEG 325
Query: 221 LDSLSALGSLFYLNLNRCQL 240
LS L L +LN+ R ++
Sbjct: 326 AKYLSELKELSFLNIERNKI 345
>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 213/446 (47%), Gaps = 82/446 (18%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NLV L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L + NLK L IS + VT GI+ L LQKL+LL+L G PV
Sbjct: 113 LTELDLSRCFKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSRLT----------------NLESL 257
T L +L L L YL++ +++ G +FS L+ +LE L
Sbjct: 173 TDHNLIALQELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECL 232
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELS------DTQ--------------VGSSGLRHLS 297
+++ C I E + + L +LK L LS +T+ V + L++ S
Sbjct: 233 HMNMCTIVSEPKTHCS-LASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFS 291
Query: 298 ---GLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL--------- 344
+ NLE ++LS T D S+ +A + +LK+LN+ +IT G+ L
Sbjct: 292 FIETMINLEHLDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHVPQLET 351
Query: 345 -----------------TSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGG 383
T + + LDL I + A A L++ +L++L +
Sbjct: 352 FSLSQTFVDDLSILLISTMMPCVKALDLGMTSIREEQAEPSLAALQSLTSLKTLSLEHPY 411
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L D + + L+ LT L+L ++ +LTD TL +S L LVSL V ++ +TS GL +P
Sbjct: 412 LGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRP 470
Query: 444 LKNLRSLTLESCK-VTANDIKRLQSR 468
K LR+L L+ C +T +DI L R
Sbjct: 471 PKRLRTLDLKGCWLLTKDDIAGLCKR 496
>gi|421611905|ref|ZP_16053033.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
gi|408497310|gb|EKK01841.1| hypothetical protein RBSH_02839 [Rhodopirellula baltica SH28]
Length = 455
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 152/320 (47%), Gaps = 5/320 (1%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
PG++D M+ + S L + L+ + +TD L ++Q L F ++D GLE
Sbjct: 118 PGIDDAGMENLTSL-PKLKYLTLADTAITDETLKTAGKLDSVQGL-FLRRTGVTDEGLEL 175
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS L ++ R +N I GM + A + L + LE+ GLV L L L+S+N
Sbjct: 176 LTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKSKVTDEGLVKLTSL-PLKSIN 233
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+C I MK L L++LQ SK+ D +A LKGL KL L + GC VT +
Sbjct: 234 FNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGI 293
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNLKC 280
++ +L L + DDG + S+L + +++ C + EG+ L L L
Sbjct: 294 QHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTY 353
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +T+ L L NLE +NL T ++D SL L + LK+LN+ Q+ D
Sbjct: 354 LGLWETKTNDETLSGFGDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVAGTQLGDDS 413
Query: 341 LAALTSLTGLTHLDLFGARI 360
L L L +++ I
Sbjct: 414 FLELAKLPNLKSMNVANTSI 433
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 165/365 (45%), Gaps = 31/365 (8%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
+ L HL N FN I D G+E+L L L L+ + AIT + +K L
Sbjct: 98 EESLQHLSGIPNTTKATFN-GPGIDDAGMENLTSLPKLKYLTLA-DTAITDETLKTAGKL 155
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
++ L L R GL L GL KL +++++ N I D+ M L+ + L +Q+ S
Sbjct: 156 DSVQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSN-IGDAGMDSLAKIKTLADVQLEKS 214
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-S 249
KVTD +GL KLT L L+ +N N C + K
Sbjct: 215 KVTD------EGLVKLTSLPLKS-------------------INFNYCTTINGPTMKMLG 249
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+ LE+L D I DE + L GL LK L + V G++H++G L L
Sbjct: 250 QTPTLENLQGDYSKINDESMAELKGLSKLKRLRIRGCDVTGEGIQHIAGNKALARFELRD 309
Query: 310 TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ + D L+ ++ L ++ +++ + R + G+A L LTGLT+L L+ + D +
Sbjct: 310 SSVDDDGLKVISQLPAVTYVDISECRLASPEGIAQLGELTGLTYLGLWETKTNDETLSGF 369
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ NL L + +TD + + + L LN++ L D + ++ L L S+NV
Sbjct: 370 GDLINLEELNLKSTSVTDESLPVLMKMIKLKTLNVA-GTQLGDDSFLELAKLPNLKSMNV 428
Query: 429 SNSRI 433
+N+ I
Sbjct: 429 ANTSI 433
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 145/291 (49%), Gaps = 4/291 (1%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ ++ LSG+ N + + D+G+ L L KL L L +T L + L S
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
+ L L R ++D+G E + L+ L +++L + IGD G+ +L + L ++L ++V
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
GL L+ L L+SIN ++ T I+ +++ L +L++L D +I D +A L L+
Sbjct: 218 DEGLVKLTSLP-LKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLS 276
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L + G +T G ++ K L E+ + D G+K I L ++T +++S+ C
Sbjct: 277 KLKRLRIRGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISE-CR 335
Query: 409 L-TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + + + + LTGL L + ++ L L NL L L+S VT
Sbjct: 336 LASPEGIAQLGELTGLTYLGLWETKTNDETLSGFGDLINLEELNLKSTSVT 386
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 25/244 (10%)
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
++ + S + N + GI D G+ NLT L LK L L+DT + L+ L +
Sbjct: 98 EESLQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDS 157
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
++ + L TG++D L L GLS L++++L I D G+ +L + L + L +++T
Sbjct: 158 VQGLFLRRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVT 217
Query: 362 DSGAAYLR-------NF-----------------KNLRSLEICGGGLTDAGVKHIKDLSS 397
D G L NF L +L+ + D + +K LS
Sbjct: 218 DEGLVKLTSLPLKSINFNYCTTINGPTMKMLGQTPTLENLQGDYSKINDESMAELKGLSK 277
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L + + C++T + ++ I+G L + +S + GL+ + L + + + C++
Sbjct: 278 LKRLRI-RGCDVTGEGIQHIAGNKALARFELRDSSVDDDGLKVISQLPAVTYVDISECRL 336
Query: 458 TAND 461
+ +
Sbjct: 337 ASPE 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L L+ + T G I D+G L + L+ L + +TD +K L S+
Sbjct: 101 LQHLSGIPNTTKATFNGPGIDDAGMENLTSLPKLKYLTLADTAITDETLKTAGKLDSVQG 160
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L + +TD+ LEL++GL+ L ++++ NS I AG+ L +K L + LE KVT
Sbjct: 161 LFL-RRTGVTDEGLELLTGLSKLRAIDLRNSNIGDAGMDSLAKIKTLADVQLEKSKVTDE 219
Query: 461 DIKRLQS 467
+ +L S
Sbjct: 220 GLVKLTS 226
>gi|46445970|ref|YP_007335.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399611|emb|CAF23060.1| hypothetical protein pc0336 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 602
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 174/309 (56%), Gaps = 9/309 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L +TD+ L+ LK+C NL+ L C ++D GL HL L L L N +T G
Sbjct: 291 LENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAG 350
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ L+ L L+L C + GL +L L+ L+ L++ C+ +TD+ + L+ L L
Sbjct: 351 LAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMAL 410
Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
+ L +S C K+TD+G+A+L L L L+L GC +T L L+ L +L +LNL+ C +
Sbjct: 411 QHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDK 470
Query: 240 LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS 297
L+D G + L L+ LNL C + D GL +LT L L+ L+L+ ++ +GL HL+
Sbjct: 471 LTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLT 530
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
L NL +NLS+ ++D L L L +L+ LNL R++TD GLA L SL L HLDL
Sbjct: 531 SLVNLRHLNLSYCRKLTDVGLAHLTPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDL 590
Query: 356 FGA-RITDS 363
G ++TD+
Sbjct: 591 SGCDKLTDA 599
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 183/348 (52%), Gaps = 32/348 (9%)
Query: 77 LKDCSN-LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK SN ++ LDF ++D L L+ NL L +R + +T G+ A L+ L
Sbjct: 278 LKHFSNEIERLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQH 337
Query: 136 LDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LDL C + GL +L LM L+ LN+ +C +TD+ + L+ L L+ L +S C +T
Sbjct: 338 LDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGCDNLT 397
Query: 194 DSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
D+G+A+L L L L L C +T A L L+ L +L YL+LN GC+K +
Sbjct: 398 DAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLN-------GCDKLT--- 447
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-T 310
D GL +LT L L L LS ++ +GL HL+ L L+ +NL +
Sbjct: 448 -------------DVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCR 494
Query: 311 GISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYL 368
++D L L L +L+ L+L+ ++TD GLA LTSL L HL+L + ++TD G A+L
Sbjct: 495 KLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHL 554
Query: 369 RNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L+ L + C LTDAG+ H+ L +L L+LS LTD LE
Sbjct: 555 TPLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDAVLE 602
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 214/444 (48%), Gaps = 53/444 (11%)
Query: 3 PRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
P ++Q+ F L+ CL + + + + + L Y + + V+ + G LL +
Sbjct: 165 PLTLTQKEFIHLL--NCLMDANFKVSEEDIPSFIQLADYYQLTE----VVKNLGEQLLDI 218
Query: 63 DLSGS----DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
S + ++ L+ LK+ NF Q L++ L+ ++SL + +
Sbjct: 219 YKSKKFELFNSSEDSLVELKEV-------LNFARQYQLNTLKNYLELTVVSSL-LNQTSQ 270
Query: 119 ITA--QGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T + +K F+ I +LD LE L+ LK L+ L ++ C+ +TD+ +
Sbjct: 271 LTEFEKILKHFSNEIE--RLDFLENDYLTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAH 328
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYL 233
L+ L L+ L +S C+ +TD+G+A+L L L LNL C +T A L L+ L +L YL
Sbjct: 329 LAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLTPLVALQYL 388
Query: 234 NLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGS 290
+L+ C L+D G + L L+ L L +C + D GL +LT L L+ L L+ ++
Sbjct: 389 DLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPLVALQYLSLNGCDKLTD 448
Query: 291 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT 348
GL HL+ L L +NLS+ ++D L L L +L+ LNL R++TD GLA LT L
Sbjct: 449 VGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRKLTDAGLAHLTPLV 508
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L HLDL C LTDAG+ H+ L +L LNLS
Sbjct: 509 ALQHLDL----------------------NRCPK-LTDAGLAHLTSLVNLRHLNLSYCRK 545
Query: 409 LTDKTLELISGLTGLVSLNVSNSR 432
LTD L ++ L L LN+S R
Sbjct: 546 LTDVGLAHLTPLVALQHLNLSCCR 569
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 124/232 (53%), Gaps = 8/232 (3%)
Query: 233 LNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VG 289
L L RC L+D G + L L+ L+L C + D GL +LT L L+ L LS + +
Sbjct: 313 LYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLTPLMALQHLNLSYCKNLT 372
Query: 290 SSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL 347
+GL HL+ L L+ ++LS ++D L L L +L+ L L A ++TD GLA LT L
Sbjct: 373 DAGLAHLTPLVALQYLDLSGCDNLTDAGLAHLTPLMALQHLGLSACDKLTDAGLAHLTPL 432
Query: 348 TGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 405
L +L L G ++TD G A+L L L + LTDAG+ H+ L +L LNL
Sbjct: 433 VALQYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRW 492
Query: 406 NCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
LTD L ++ L L L+++ ++T AGL HL L NLR L L C+
Sbjct: 493 CRKLTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCR 544
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 8/164 (4%)
Query: 40 QYPGVN--DKWMDVIASQGSSLLSV---DLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQ 93
QY +N DK DV + + L+++ +LS D +TD+GL HL LQ L+ +C +
Sbjct: 436 QYLSLNGCDKLTDVGLAHLTPLVALTHLNLSWCDKLTDAGLAHLTPLVALQHLNLRWCRK 495
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK 152
++D GL HL L L L R +T G+ L+NL L+L C ++ GL +L
Sbjct: 496 LTDAGLAHLTPLVALQHLDLNRCPKLTDAGLAHLTSLVNLRHLNLSYCRKLTDVGLAHLT 555
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L+ L+ LN+ C +TD+ + L+ L L+ L +S C K+TD+
Sbjct: 556 PLVALQHLNLSCCRKLTDAGLAHLASLLALQHLDLSGCDKLTDA 599
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+ L+N KNL+ L + LTDAG+ H+ L +L L+LS+ NLTD L ++
Sbjct: 296 LTDTHLLVLKNCKNLKELYLQRCHNLTDAGLAHLAPLLALQHLDLSECNNLTDAGLAHLT 355
Query: 419 GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
L L LN+S + +T AGL HL PL L+ L L C
Sbjct: 356 PLMALQHLNLSYCKNLTDAGLAHLTPLVALQYLDLSGC 393
>gi|406831735|ref|ZP_11091329.1| hypothetical protein SpalD1_08854 [Schlesneria paludicola DSM
18645]
Length = 422
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 184/373 (49%), Gaps = 9/373 (2%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+E D A + + P N+K + ++ S +L S+D+S +T+ GL L L+
Sbjct: 45 VERSSDRATVRVSFNEGPRFNEKHLHLLKSL-PNLTSLDVSAIVITEDGLRELGQLKFLR 103
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL--DLERCT 142
L + I+D GL L L +LT L+ ++T +G+K F + +++ DLE
Sbjct: 104 RLVVD-GRSITDEGLMELVDLRSLTELTIS-ATSVTDEGLKQFQSFLPQLRILSDLESVR 161
Query: 143 RI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
R+ GG + + ++ +++ D D++ L L +L+SL + + +TD + +
Sbjct: 162 RLAGFGGEIE-RSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGALLTV 220
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
LQKL L L +T L +L L L L+L+R ++ D G ++ +L L SL L
Sbjct: 221 GRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTSLMLH 279
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
+ D GL+ L L ++ L L + +GL L NL + L+ T I+DG LR +
Sbjct: 280 DTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGGLRNV 339
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L L+ L L QITD GL L L L L L G R+TD L+ ++NL +++
Sbjct: 340 GQLRKLRILQLGDSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLVHIDLR 399
Query: 381 GGGLTDAGVKHIK 393
G T+AGV +K
Sbjct: 400 QTGFTEAGVTELK 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 172/379 (45%), Gaps = 13/379 (3%)
Query: 99 LEHLRGLSNLTS------LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
LE L G+ +S +SF + + L NL LD+ GL L
Sbjct: 38 LERLGGIVERSSDRATVRVSFNEGPRFNEKHLHLLKSLPNLTSLDVSAIVITEDGLRELG 97
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLL-N 210
L L L + ITD + L L +L L IS + VTD G+ + L +L +L +
Sbjct: 98 QLKFLRRLVVDG-RSITDEGLMELVDLRSLTELTISATSVTDEGLKQFQSFLPQLRILSD 156
Query: 211 LEGCPVTAACLDSLS-ALGSLFYLNL-NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
LE A + + G + ++L N+ Q D E L +LESL+L I D
Sbjct: 157 LESVRRLAGFGGEIERSDGRVIRISLHNKPQFGDGDIESLMSLRHLESLDLGGTSITDGA 216
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L+ + L L L+L T++ GL+ L L L ++LS T I D L ++ L L S
Sbjct: 217 LLTVGRLQKLIQLQLPSTRITDRGLKALRNLKQLSILDLSRTRIGDVGLDEIKKLP-LTS 275
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L Q+TD GL AL L + L L+ ITD+G L F+NL L + +TD G
Sbjct: 276 LMLHDTQVTDFGLLALQDLKEVQFLGLYKCAITDTGLVTLGRFQNLSELCLNSTRITDGG 335
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
++++ L L +L L + +TD L + L LV L + +R+T + LK +NL
Sbjct: 336 LRNVGQLRKLRILQLG-DSQITDAGLLELRHLNNLVGLVLRGTRVTDDSVNTLKRYQNLV 394
Query: 449 SLTLESCKVTANDIKRLQS 467
+ L T + L++
Sbjct: 395 HIDLRQTGFTEAGVTELKA 413
>gi|290991306|ref|XP_002678276.1| predicted protein [Naegleria gruberi]
gi|284091888|gb|EFC45532.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 153/299 (51%), Gaps = 2/299 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D K + + L SL I +++ D GI + +++LTLL++ G
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDISG 158
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + +S + L LN+ ++ G + + L SL++ IGDEG +++
Sbjct: 159 NSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSIS 218
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L L +S Q+G G++ +S + L +++S I D ++ ++ + L SLN+
Sbjct: 219 ELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYN 278
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I G + + LT LD+ I D GA + K L SL I G + D G+K I
Sbjct: 279 NEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLIS 338
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ LTLL++S ++ DK ++ IS + L SL + + I AG + + +K L SL +
Sbjct: 339 EMKQLTLLDIS-GKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDI 396
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 175/349 (50%), Gaps = 3/349 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ NN I + K+ + L LD+ G+ + + +L L+I
Sbjct: 100 MKQLTSLNIS-NNQINDETAKSIIEMKRLTSLDIGGNQIGDEGIKLISEMKQLTLLDIS- 157
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D +KP+S + L SL I +++ +G ++ +++LT L++ + S+
Sbjct: 158 GNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSI 217
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
S L L L ++ Q+ D+G + S + L L++ IGD+G+ ++ + L L +
Sbjct: 218 SELKQLTSLTVSGNQIGDEGIKLISEMKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIY 277
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ ++G +G + + + L S+++S+ I D + ++ + L SL + QI D G+ +
Sbjct: 278 NNEIGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLI 337
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + LT LD+ G + D G + K L SL I + AG K I ++ LT L++S
Sbjct: 338 SEMKQLTLLDISGKSVGDKGVKSISKMKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDIS 397
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
N + D+ + IS L L L++S + I G + + +K L+SL ++
Sbjct: 398 YN-EIGDEGAKSISELKQLTLLDISGNGIGDEGSKFIIGMKQLKSLDIQ 445
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 158/321 (49%), Gaps = 3/321 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ G+ + D G+ + + L LD + I D G++ + + LTSL+ NN
Sbjct: 127 LTSLDIGGNQIGDEGIKLISEMKQLTLLDISGN-SIGDKGVKPISKMKQLTSLNI-YNNE 184
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I G K + L LD+ G ++ L +L SL + N I D +K +S
Sbjct: 185 IGVAGSKFIIEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTVS-GNQIGDEGIKLISE 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L IS + + D G+ + +++LT LN+ + A + + L L+++
Sbjct: 244 MKQLTLLDISGNSIGDKGVKPISKMKQLTSLNIYNNEIGVAGSKFIIEMKQLTSLDISYN 303
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ D+G + S + L SL + IGDEG+ ++ + L L++S VG G++ +S
Sbjct: 304 EIGDEGAKSISEMKQLTSLTISGNQIGDEGIKLISEMKQLTLLDISGKSVGDKGVKSISK 363
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+ + I + ++ + L SL++ +I D G +++ L LT LD+ G
Sbjct: 364 MKQLTSLTIYTNEIGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTLLDISGN 423
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
I D G+ ++ K L+SL+I
Sbjct: 424 GIGDEGSKFIIGMKQLKSLDI 444
>gi|46445969|ref|YP_007334.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399610|emb|CAF23059.1| hypothetical protein pc0335 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 642
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 171/310 (55%), Gaps = 10/310 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+LN +TD+ + L NLK LQ+ +C TD+G+A+L L L LNL C
Sbjct: 305 EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYC 364
Query: 215 P-VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVN 271
+T A L L+ L L +LNL+ C L+D G + L L LNL C + D GL +
Sbjct: 365 KNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAH 424
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LT L L L+L + ++ + GL HL+ L L+ ++L++ ++D L L+ L +L+ L
Sbjct: 425 LTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHL 484
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
L +TD GLA L L LTHLDL + ITD+G A+L L+ L + G LTD
Sbjct: 485 KLCCCVSLTDAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTD 544
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLK 445
G+ H+ L +L L L++ NLTD L ++ L L L++S R +T+AGL HL PL
Sbjct: 545 VGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLV 604
Query: 446 NLRSLTLESC 455
L+ L L C
Sbjct: 605 ALQRLDLRCC 614
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 171/346 (49%), Gaps = 31/346 (8%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL+ L C +D GL HL L L L+ +T G+
Sbjct: 314 NAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLA 373
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A L+ L L+L C + GL +L L+ L LN+ WCN +TD+ + L+ L L
Sbjct: 374 HLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTH 433
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
L + C K+T+ G+A+L L L L+L C +T A L LS+L +L +L L C L+
Sbjct: 434 LDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLT 493
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
D G + L L L+L C I D GL +LT L L+ +G SG R L+
Sbjct: 494 DAGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQ-------HLGLSGCRRLT--- 543
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR 359
D L L L +L+ L L+ +TD GLA LT L L HLDL R
Sbjct: 544 -------------DVGLAHLTRLVALQHLGLNRCDNLTDAGLAHLTPLINLQHLDLSECR 590
Query: 360 -ITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNL 403
+T++G A+L L+ L++ C LT A + H K L + L+L
Sbjct: 591 KLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFKFLVAKPHLDL 636
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 180/356 (50%), Gaps = 43/356 (12%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLES 159
L SN + +L+F +N +T + NL L L+ C GL +L LM L+
Sbjct: 299 LNHFSNEIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMALQH 358
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
LN+ +C +TD+ + L+ L L+ L +S C +TD+G+A+L L LT LNL C +T
Sbjct: 359 LNLSYCKNLTDAGLAHLAPLVVLQHLNLSSCHNLTDAGLAHLTPLVALTHLNLSWCNKLT 418
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGL 275
A L L+ L +L +L+L C +L++ G + L L+ L+L+ C + D GL +L+ L
Sbjct: 419 DAGLAHLTPLVALTHLDLRECDKLTNRGLAHLALLLTLQYLDLNYCRNLTDAGLAHLSSL 478
Query: 276 CNLK------CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKS 328
L+ C+ L+D +GL HL+ L L ++LS+ I+D L L L +L+
Sbjct: 479 VALQHLKLCCCVSLTD-----AGLAHLAPLVALTHLDLSWCFNITDAGLAHLTPLVTLQH 533
Query: 329 LNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L R++TD GLA LT L L HL L C LTDA
Sbjct: 534 LGLSGCRRLTDVGLAHLTRLVALQHL----------------------GLNRCDN-LTDA 570
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLK 442
G+ H+ L +L L+LS+ LT+ L ++ L L L++ +++T A L H K
Sbjct: 571 GLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAHFK 626
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 123/265 (46%), Gaps = 57/265 (21%)
Query: 253 NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF- 309
NL+ L L +C D GL +LT L L+ L LS + + +GL HL+ L L+ +NLS
Sbjct: 330 NLKVLQLQACHNFTDAGLAHLTPLMALQHLNLSYCKNLTDAGLAHLAPLVVLQHLNLSSC 389
Query: 310 TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL------------- 355
++D L L L +L LNL ++TD GLA LT L LTHLDL
Sbjct: 390 HNLTDAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTNRGLAH 449
Query: 356 -------------FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 401
+ +TD+G A+L + L+ L++C LTDAG+ H+ L +LT L
Sbjct: 450 LALLLTLQYLDLNYCRNLTDAGLAHLSSLVALQHLKLCCCVSLTDAGLAHLAPLVALTHL 509
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSR--------------------------ITS 435
+LS N+TD L ++ L L L +S R +T
Sbjct: 510 DLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRCDNLTD 569
Query: 436 AGLRHLKPLKNLRSLTLESCKVTAN 460
AGL HL PL NL+ L L C+ N
Sbjct: 570 AGLAHLTPLINLQHLDLSECRKLTN 594
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 293 LRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
L H S +E++N S ++D L L +LK L L A TD GLA LT L L
Sbjct: 299 LNHFSN--EIEALNFSKNAHLTDAQLLTLKNCKNLKVLQLQACHNFTDAGLAHLTPLMAL 356
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
HL+L +Y +N LTDAG+ H+ L L LNLS NLT
Sbjct: 357 QHLNL----------SYCKN-------------LTDAGLAHLAPLVVLQHLNLSSCHNLT 393
Query: 411 DKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
D L ++ L L LN+S +++T AGL HL PL L L L C N
Sbjct: 394 DAGLAHLTPLVALTHLNLSWCNKLTDAGLAHLTPLVALTHLDLRECDKLTN 444
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 58 SLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DLS ++TD+GL HL LQ L + C +++D GL HL L L L R
Sbjct: 505 ALTHLDLSWCFNITDAGLAHLTPLVTLQHLGLSGCRRLTDVGLAHLTRLVALQHLGLNRC 564
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ +T G+ LINL LDL C ++ + GL +L L+ L+ L+++ CN +T + +
Sbjct: 565 DNLTDAGLAHLTPLINLQHLDLSECRKLTNAGLAHLTPLVALQRLDLRCCNKLTGARLAH 624
Query: 176 LSGLTNLKSLQISCSK 191
L L + K
Sbjct: 625 FKFLVAKPHLDLRWYK 640
>gi|330506767|ref|YP_004383195.1| internalin-A [Methanosaeta concilii GP6]
gi|328927575|gb|AEB67377.1| internalin-A, putative [Methanosaeta concilii GP6]
Length = 567
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 149/416 (35%), Positives = 220/416 (52%), Gaps = 66/416 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL LD + QI+D L GL+NLT L NN IT + + +GLINL+ LDL
Sbjct: 166 TNLTDLDLSTN-QITDAS--PLSGLTNLTDLDL-DNNQIT--DVSSLSGLINLMNLDLS- 218
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD-------------------SDMKPLSGLTN 181
RI V+L GL + L++ W N ITD +D+ LSGLTN
Sbjct: 219 SNRITN--VSLSGLTNVVWLDL-WGNQITDVTLSGLTNLTWLDVSRNQIADVSSLSGLTN 275
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + C+++TD ++ L GL LT L+L +T A LS L +L YL+L+ +++
Sbjct: 276 LTKLYLGCNQITD--VSSLSGLTNLTDLDLSTNQITDAS--PLSGLTNLTYLDLDNNRIN 331
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D S LTNL L L + I D + +L+GL NLK L+LS+ Q+ + LSGLTN
Sbjct: 332 D---VSLSDLTNLTDLELSNNQIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTN 384
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + LS I++ + L+ L+SL+ L+LD QI D +++L++LT L L L T
Sbjct: 385 LTDLELSSNEITN--ISSLSSLASLRCLDLDNNQIID--VSSLSALTSLKWLRLCSNHAT 440
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D A+ L + NLR L++ +TD V + L +L LNLS N +TD + +SGL
Sbjct: 441 D--ASSLSSLVNLRWLDLSSNQITD--VSPLSGLYNLGWLNLSSN-QITD--VSPLSGLA 493
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L++S+++IT + PL NL +L L+S+ +P+ + R
Sbjct: 494 NLTGLDLSSNQIT-----DVSPLSNLTNLIW----------MDLRSKQIPDASTLR 534
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 187/362 (51%), Gaps = 59/362 (16%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
I L+ D+ I G L+ + LE+L+++ N I SD LSGLT LK L++S +
Sbjct: 60 IKLLNADMSSIKDITG----LERCINLENLSLR-ENEI--SDASSLSGLTGLKRLELSSN 112
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----------------DSLSALGSLFYLN 234
++TD ++ L L+ L+L + V+ + L SLS L +L L+
Sbjct: 113 QITDVSLSGLANLETLSLWDNHITNVSLSGLTNLDTLLLWGNKIINVSSLSGLTNLTDLD 172
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---TQVGSS 291
L+ Q++D S LTNL L+LD+ I D + +L+GL NL L+LS T V S
Sbjct: 173 LSTNQITD--ASPLSGLTNLTDLDLDNNQITD--VSSLSGLINLMNLDLSSNRITNVSLS 228
Query: 292 GLRH---------------LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
GL + LSGLTNL +++S I+D S L+GL++L L L QI
Sbjct: 229 GLTNVVWLDLWGNQITDVTLSGLTNLTWLDVSRNQIADVS--SLSGLTNLTKLYLGCNQI 286
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD +++L+ LT LT LDL +ITD A+ L NL L++ + D + DL+
Sbjct: 287 TD--VSSLSGLTNLTDLDLSTNQITD--ASPLSGLTNLTYLDLDNNRINDVS---LSDLT 339
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LT L LS N + D + +SGLT L L++SN++I + L L NL L L S +
Sbjct: 340 NLTDLELSNN-QIND--VSSLSGLTNLKDLDLSNNQIN--DISSLSGLTNLTDLELSSNE 394
Query: 457 VT 458
+T
Sbjct: 395 IT 396
>gi|149175664|ref|ZP_01854283.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
gi|148845383|gb|EDL59727.1| hypothetical protein PM8797T_31103 [Planctomyces maris DSM 8797]
Length = 660
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 196/380 (51%), Gaps = 9/380 (2%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
ISD + + L +L R N + + + L KL L C + L
Sbjct: 275 ISDQDRGRITTFTQLKTL--RLENVHLGRHLNDLSTFRKLEKLALRNCGLDEDDVATLGS 332
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNL 211
L +L L++ + + D + L L L+ L+++ +++T+ G+ YL+ +KL L+L
Sbjct: 333 LTQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQPRKLKTLDL 392
Query: 212 EGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDG--CEKFSRLTNLESLNLDSCGI-GDE 267
GC + A L ++ + SL LNL C D + L +L L L+ + G E
Sbjct: 393 IGCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTLECRQLKGGE 452
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GL +L+ L L+ L L T++ +R ++ +L+++ L+ ++D + L L L+
Sbjct: 453 GLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVSSLGSLKQLE 512
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
SLNLD ++ +GL +L L LT + L +TD+ +L + L+ L + G ++ A
Sbjct: 513 SLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLTLENGRVSSA 572
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
++ +KDL L+ LNL+ NC ++D+ EL++ ++ L +LN++ +++++ GL L+ L
Sbjct: 573 TLESLKDLKKLSELNLT-NCPVSDEICELLTQMSALRTLNLNKTKVSNIGLEGLQKATGL 631
Query: 448 RSLTLESCKVTANDIKRLQS 467
+L+L KVT +++L++
Sbjct: 632 ETLSLRRTKVTRQGVQQLRT 651
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 8/327 (2%)
Query: 50 DVIASQGS--SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGL 105
D +A+ GS L +DLSG S + D L HL++ + L+ L ++ +I++ GL++LR
Sbjct: 325 DDVATLGSLTQLRELDLSGNSSLNDVALFHLRNLNQLEELKVASYYNRITEKGLQYLRQP 384
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCT-RIHGGLVN-LKGLMKLESLNI 162
L +L + A G+ A + +L L+L+ C R+ + L+ L L L +
Sbjct: 385 RKLKTLDLI-GCMLKADGLAAIGDVSSLETLNLKVYCPERVDAHFFDPLRHLKSLRELTL 443
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + LS L L++L + +K+ D I ++ L L L VT +
Sbjct: 444 ECRQLKGGEGLSSLSQLPELEALHLLQTKLQDEDIRWIANCNSLKALTLNSYEVTDQGVS 503
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
SL +L L LNL+RC+L G +L L ++L+ G+ D + L+ L LK L
Sbjct: 504 SLGSLKQLESLNLDRCRLDGSGLVSLQQLHRLTDVSLNHTGVTDAVIPFLSSLSQLKRLT 563
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + +V S+ L L L L +NL+ +SD L +S+L++LNL+ ++++ GL
Sbjct: 564 LENGRVSSATLESLKDLKKLSELNLTNCPVSDEICELLTQMSALRTLNLNKTKVSNIGLE 623
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLR 369
L TGL L L ++T G LR
Sbjct: 624 GLQKATGLETLSLRRTKVTRQGVQQLR 650
>gi|307108381|gb|EFN56621.1| hypothetical protein CHLNCDRAFT_57520 [Chlorella variabilis]
Length = 790
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 145/444 (32%), Positives = 220/444 (49%), Gaps = 55/444 (12%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
V D ++ +A + L ++D++G + VTD +G L L L+ C ++D GLE
Sbjct: 338 VGDGVLEAVA-RCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLE 396
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMK 156
L L +L +L+ + +T +G+ +GL L L+L+ C + G L L L +
Sbjct: 397 LLPTLRSLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHR 456
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SL ++ C+ + D + L GLT+L+ L +S C ++T G+A L L+ L L L+ C
Sbjct: 457 LTSLCMRGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCS 516
Query: 216 --VTAACLDSLSALGSLFYLNLNRC------------------QLSDDGCEKF------- 248
AA L LS L SL LNL C QLS +GC
Sbjct: 517 GLRGAAALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGL 576
Query: 249 ----SRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRHLSGL 299
L L SLNL C + D GL + L L L LS+ T G++ R +
Sbjct: 577 EALAPSLHRLTSLNLQGCSTLTDAGLQKMGPLTGLVSLNLSECPSITGAGAAAWR----M 632
Query: 300 TNLESINLSFT-GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLF 356
L S+ L + G+ D L LAGL++L+SLNL +++ D GLAA+ +L LT L L
Sbjct: 633 PLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCKRVGDGGLAAMAPALQRLTALCLQ 692
Query: 357 G-ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
G + +TD+G A L ++L+ LE+ DAG+ + LS+L+ L+L + +TD +L
Sbjct: 693 GMSEVTDAGVAQLGALRSLQDLELQFAWQFGDAGIAALTRLSALSRLDLMYSWKITDDSL 752
Query: 415 ELISGLTGLVSLNVSN-SRITSAG 437
+ +T L+SLNV R+T G
Sbjct: 753 RSLGRMTSLLSLNVLGCHRLTPGG 776
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 172/351 (49%), Gaps = 42/351 (11%)
Query: 124 MKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++A A L LD+ CT + G L L +L LN+K C + D ++ L L
Sbjct: 343 LEAVARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLR 402
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLN---L 235
+L +L + C +VTD G+A+L GL +L LNL+GC A SLS LG+L L +
Sbjct: 403 SLAALNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLANGAGQSLSGLGALHRLTSLCM 462
Query: 236 NRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ--VGSS 291
C +L+D + LT+L L+L C + +GL L+ L L CL L G++
Sbjct: 463 RGCDRLADGALDFLPGLTSLRQLDLSGCKELTADGLAPLSSLRLLACLRLQHCSGLRGAA 522
Query: 292 GLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQIT--DTGLAALT-S 346
LR LS L++L ++NL T I SLR L LS+L+ L+L+ R + D GL AL S
Sbjct: 523 ALRPLSTLSSLTALNLGGCTAIHGQSLRALGTLSALRQLSLEGCRGVVLLDAGLEALAPS 582
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L LT L+L G LTDAG++ + L+ L LNLS+
Sbjct: 583 LHRLTSLNLQGCST-----------------------LTDAGLQKMGPLTGLVSLNLSEC 619
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
++T + L SL + NS + AGL L L LRSL L+ CK
Sbjct: 620 PSITGAGAAAWR-MPLLASLQLQNSPGVDDAGLAALAGLTALRSLNLKQCK 669
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 138/336 (41%), Gaps = 53/336 (15%)
Query: 163 KWCNCITDSDMKPLSGLT--NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+W D ++GL+ ++K+ +++C+ D A +Q L P C
Sbjct: 122 RWAELPADVWRWVVAGLSPGDVKAARLACA---DWRAALSTNVQLLR-------PRQMRC 171
Query: 221 LDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNL 278
+ ++ S+ L L C QL D + L+ L ++L C G+ DEG+ L L L
Sbjct: 172 RLAAASFPSVQVLELGHCRQLQDWDLADVALLSTLRCVSLRGCEGVTDEGVAQLARLPRL 231
Query: 279 K------CLELSDTQVGSSGLRHLSGLTNLE---------------SINLSFTGISDGSL 317
C++L+D GL L+G++ E L G +
Sbjct: 232 SRLVLRNCVKLTDV-----GLARLAGVSGRELPQLWAPAGPGSPPPVPRLRSPGARLPAA 286
Query: 318 RKLAGLSSLKSLNLDARQ---ITDTGLAALTSLTGL--THLDLFG-ARITDSGAAYLRNF 371
+LD +T+ G AA S T L L G +R++ G L
Sbjct: 287 AAPPPCRRPPLASLDLAGCVLLTERGFAAAASGLAASLTELLLGGCSRVSTVGDGVLEAV 346
Query: 372 ---KNLRSLEICG-GGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ LR+L++ G G+TD G + L L+ LNL +L D LEL+ L L +
Sbjct: 347 ARCRGLRALDMAGCTGVTDEGTGFTQLSRLQQLSELNLKGCYSLADDGLELLPTLRSLAA 406
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LN+ ++T GL HL L L L L+ C+ AN
Sbjct: 407 LNLQECWQVTDRGLAHLSGLTRLEDLNLQGCRNLAN 442
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
L Q V D + +A L ++ L G S+VTD+G+ L +LQ L+ F Q D
Sbjct: 665 LKQCKRVGDGGLAAMAPALQRLTALCLQGMSEVTDAGVAQLGALRSLQDLELQFAWQFGD 724
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
G+ L LS L+ L + IT +++ + +L+ L++ C R+ G
Sbjct: 725 AGIAALTRLSALSRLDLMYSWKITDDSLRSLGRMTSLLSLNVLGCHRLTPG 775
>gi|188586163|ref|YP_001917708.1| hypothetical protein Nther_1542 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350850|gb|ACB85120.1| Leucine-rich repeat, ribonuclease inhibitor subtype [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 344
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 168/321 (52%), Gaps = 18/321 (5%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
NLK +K E L ++ IT+ +++ L+ LT +S + GI Y LQ+L+L
Sbjct: 38 NLKAAIK-EELGVE---QITEENIEDLTTLT------VSGEDINIKGIEYAINLQELSL- 86
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
+G + +++L+ + +L LNLN +++D+G E+ + NL+ ++L + DEG
Sbjct: 87 --QGTKI--EDVNTLAEVDNLEELNLNYTEITDEGIEQLAEADNLKQISLTHTDVTDEGT 142
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L +L+ L LS T+V GL HL NL+ ++L T ++D LA +L+ L
Sbjct: 143 KLLAESESLERLILSGTEVTDDGLEHLIEADNLKKLDLHGTDVTDDGAEHLAETDNLEKL 202
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L ++TD G+ L + L L L +TD+G YL NL L + G +T+ GV
Sbjct: 203 SLVDTEVTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLDGTEITNEGV 262
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K++ + +L L+L Q +TD + ++ L L++ ++ +T G++ L +L+
Sbjct: 263 KYLAEADNLEELDLKQ-TKVTD--VNALAETDSLEELDLWDTDVTDEGVKELAEADSLKV 319
Query: 450 LTLESCKVTANDIKRLQSRDL 470
+ L+ +VT ++ L+ D+
Sbjct: 320 VNLDETEVTNEGVEHLEDEDI 340
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 31/265 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L Y + D+ ++ +A + +L + L+ +DVTD G L + +L+ L +
Sbjct: 103 LEELNLN-YTEITDEGIEQLA-EADNLKQISLTHTDVTDEGTKLLAESESLERLILSGT- 159
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D GLEHL NL L + +T G + A NL KL LV+ +
Sbjct: 160 EVTDDGLEHLIEADNLKKLDLHGTD-VTDDGAEHLAETDNLEKL----------SLVDTE 208
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+TD ++ L + NL+ L + ++VTD+G+ YL L +L+L+
Sbjct: 209 ---------------VTDEGIEQLVKVDNLEVLILGWTEVTDNGVEYLAEADNLEMLHLD 253
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
G +T + L+ +L L+L + +++D + +LE L+L + DEG+ L
Sbjct: 254 GTEITNEGVKYLAEADNLEELDLKQTKVTD--VNALAETDSLEELDLWDTDVTDEGVKEL 311
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLS 297
+LK + L +T+V + G+ HL
Sbjct: 312 AEADSLKVVNLDETEVTNEGVEHLE 336
>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]
Length = 598
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 230/498 (46%), Gaps = 74/498 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLF- 231
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270
Query: 232 ---------------YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL- 275
+L+++R L + C S + LE L+L +GD+ + + +
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328
Query: 276 CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--- 331
NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+K +NL
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388
Query: 332 --------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
D+ + + LAAL SL + LDL G ++ D L F+ L L + G
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
LTD L+L Q +S L L++L++ ++ +T+ GL KP
Sbjct: 449 LTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTNGGLNSFKP 483
Query: 444 LKNLRSLTLESCKVTAND 461
L+ L L C + D
Sbjct: 484 PATLKLLDLRGCWLLTED 501
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 180/400 (45%), Gaps = 44/400 (11%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G L L++ C RI + L + G+ L+ L++ C +
Sbjct: 73 IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
DS ++ L + L+ L IS + VT GI + L L++L+L G PVT L SL L
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L YL+L ++S+ G L LN I + L L ++ CL +S+ +
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLN-----IAWTDVTTLPDLPSIACLNMSNCTIH 247
Query: 290 S----SGLRHL------SGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKS-- 328
S G + L SG T L E+ LSF +S SL LS +K+
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307
Query: 329 -LNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLT 385
L+L + D + + + L +L+L R++ +G + L NL ++ + +
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNL-----TDKTLELISGLTGLVSLN------VSNSRIT 434
D + +I +SS+ ++NLS N N+ +D L L L SLN + +++
Sbjct: 368 DVAISYISMMSSVKIINLS-NTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVE 426
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L L + L L+L+ ++T D+ Q LPNL+
Sbjct: 427 DEALCPLLRFQQLNELSLKGTRLT--DLSLYQLSSLPNLI 464
>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]
Length = 588
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 230/498 (46%), Gaps = 74/498 (14%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++ + + L+ R L LE F+ +++ + L V+ +WM I L S
Sbjct: 40 MPSHLAEALLHRLIRRRILNPSLLEVFK-FSVEKIDLRGESSVDAEWMAYIGG-FCCLCS 97
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++++ +T+S L + NL+ LD + CI+ SD GL HL + L L +T
Sbjct: 98 LNIADCQRITNSALWPIIGMPNLKELDLSRCIKFSDSGLRHLISIRTLQKLCISET-GVT 156
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A G+ + L NL LDL L +L+ L KL+ L++ W + I++ L
Sbjct: 157 ADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTKLQYLDL-WGSKISNKGAADLVVFP 215
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--------ACLDSLSALGSLF- 231
L L I+ + VT L L + LN+ C + + A L+ ++ G+ F
Sbjct: 216 KLSFLNIAWTDVTT-----LPDLPSIACLNMSNCTIHSMFEGEGAKALLEKITVSGATFL 270
Query: 232 ---------------YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL- 275
+L+++R L + C S + LE L+L +GD+ + + +
Sbjct: 271 NVSEAFLFIETSFLSFLDVSRSSL-NSFC-FLSCMKALEHLDLSFTMMGDDSIQLIACIG 328
Query: 276 CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNL--- 331
NL+ L LS+T+V S+G+ L+G + NLE+I+LS T + D ++ ++ +SS+K +NL
Sbjct: 329 ANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDDVAISYISMMSSVKIINLSNT 388
Query: 332 --------DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
D+ + + LAAL SL + LDL G ++ D L F+ L L + G
Sbjct: 389 NVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVEDEALCPLLRFQQLNELSLKGTR 448
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
LTD L+L Q +S L L++L++ ++ +T+ GL KP
Sbjct: 449 LTD--------------LSLYQ-----------LSSLPNLINLSIGDTVLTNGGLNSFKP 483
Query: 444 LKNLRSLTLESCKVTAND 461
L+ L L C + D
Sbjct: 484 PATLKLLDLRGCWLLTED 501
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 180/400 (45%), Gaps = 44/400 (11%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G L L++ C RI + L + G+ L+ L++ C +
Sbjct: 73 IDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRCIKFS 132
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
DS ++ L + L+ L IS + VT GI + L L++L+L G PVT L SL L
Sbjct: 133 DSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQVLTK 192
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L YL+L ++S+ G L LN I + L L ++ CL +S+ +
Sbjct: 193 LQYLDLWGSKISNKGAADLVVFPKLSFLN-----IAWTDVTTLPDLPSIACLNMSNCTIH 247
Query: 290 S----SGLRHL------SGLTNL---------ESINLSFTGISDGSLRKLAGLSSLKS-- 328
S G + L SG T L E+ LSF +S SL LS +K+
Sbjct: 248 SMFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALE 307
Query: 329 -LNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLT 385
L+L + D + + + L +L+L R++ +G + L NL ++ + +
Sbjct: 308 HLDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVD 367
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNL-----TDKTLELISGLTGLVSLN------VSNSRIT 434
D + +I +SS+ ++NLS N N+ +D L L L SLN + +++
Sbjct: 368 DVAISYISMMSSVKIINLS-NTNVKGLIWSDSELVWELSLAALHSLNYVKRLDLEGTQVE 426
Query: 435 SAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L L + L L+L+ ++T D+ Q LPNL+
Sbjct: 427 DEALCPLLRFQQLNELSLKGTRLT--DLSLYQLSSLPNLI 464
>gi|290993170|ref|XP_002679206.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092822|gb|EFC46462.1| leucine rich repeat protein [Naegleria gruberi]
Length = 527
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 196/425 (46%), Gaps = 44/425 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ ++ + L L + ISD G+++LR L LT+L
Sbjct: 118 SELKQLTRLTIDASHIRDEGVRYISELKQLAYLSVH-SNDISDDGVKYLRELKQLTTLII 176
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N + ++G K + L L L C I +N +G + + C CI++
Sbjct: 177 F-SNRVGSEGCKCISELKQLTSL----C--IDDNHINDEGANN--RVGSEGCKCISE--- 224
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L L SL I + + D G YL S L L YL
Sbjct: 225 -----LKQLTSLCIDDNHINDEGAKYL------------------------SELAQLTYL 255
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+++ L ++G + S L LE LN+ IGDEGL L L LELS+ ++G+ G
Sbjct: 256 DISSNGLGNEGTKYISTLNQLEKLNISQNYIGDEGLEYFGKLSQLTSLELSNNKIGTEGA 315
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++LS L L +++ + I D L L +L ++ +I + G+ + L L +L
Sbjct: 316 KYLSELKQLTQLDIEYNKIGDKGAMYFGELKQLVNLIINNNRIGNDGVKYIGELKQLIYL 375
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ RI + G Y+ K L + I + + G K+I LS LT L LS N N+ ++
Sbjct: 376 DISENRIGNEGIKYIGELKQLTDVNISENRIGNEGAKYIGQLSQLTSLYLSNN-NIGNEG 434
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPN 472
+ IS L L+ L ++N++I + G +++ +K + L + + + IK + + + L +
Sbjct: 435 AKYISELKELIYLYMNNNKIRNEGAKYISEMKQVTQLDIGNNYIGEEGIKYISEMKQLIH 494
Query: 473 LVSFR 477
L ++
Sbjct: 495 LEKYQ 499
>gi|290999929|ref|XP_002682532.1| predicted protein [Naegleria gruberi]
gi|284096159|gb|EFC49788.1| predicted protein [Naegleria gruberi]
Length = 339
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 2/296 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L GL +L+SL+I + + I ++ +S L L +L I + G YL L++LT L
Sbjct: 46 HLSGLKQLKSLHI-YGSQIRGEGVRYISELKQLTNLDIRSHNIFHIGAKYLSELKQLTTL 104
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
N+ G + A +S L L L + + +G + S L L +L + +G+EGL
Sbjct: 105 NIYGNHIGAKGSKYISELNQLTTLFIAENSIGVEGAKYLSELKQLTNLGISVNWLGNEGL 164
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
++ + L L++S +G+ G +HL L L +N+S I D L + L L +L
Sbjct: 165 AYVSKIKQLTILDISHNDIGAEGGKHLGELKQLTLLNISHNKIQDEGLENIGKLKQLTTL 224
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
++ I G L+ L LT L++ RI D G+ Y+ K L L I + + G
Sbjct: 225 IINQNDIGAEGAQYLSELKQLTFLNISDNRIGDEGSKYIGELKQLVDLYINDNDIGEEGA 284
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
K+++DL L LN+ N D+ + IS L L L+++N+ I G +HL +K
Sbjct: 285 KYLRDLKQLIYLNVGGN-EFGDEGAKYISELKQLTKLDINNNSIGDEGTKHLSEMK 339
>gi|406830574|ref|ZP_11090168.1| hypothetical protein SpalD1_03019 [Schlesneria paludicola DSM
18645]
Length = 404
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 144/299 (48%), Gaps = 25/299 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
TD+D+ L L+SL +S ++++ GIA L L+ LT+L+L PV A L L
Sbjct: 63 FTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIEL 122
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
SL L++ Q+SD + NL +L L I + GL +L+ L L+L+ T+
Sbjct: 123 DSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTR 182
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V G+ L L NL + LS I+D L + GLS LK L+L A QITD GL L L
Sbjct: 183 VSDEGMTALKRLENLTELRLSGNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGL 242
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L ++ D+G L L +L+ +TD + + +++LT L+L +N
Sbjct: 243 NNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNP 302
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
I+ GLR+L L+NL+ + L VTA+ +KR Q
Sbjct: 303 -------------------------ISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 143/278 (51%), Gaps = 5/278 (1%)
Query: 142 TRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
T+I G G+ L L L L++ + ++ K L L +L +L ++ ++V+D+ +
Sbjct: 85 TQISGKGIAELSVLRSLTVLHLANL-PVKNAQFKKLIELDSLTTLDVADTQVSDAALQGS 143
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
LT L L G +T A L+ LS G L L+L + ++SD+G RL NL L L
Sbjct: 144 IAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKRLENLTELRLS 203
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
I D GL + GL +LK L+L+ TQ+ +GL+HL GL NL + L + D + L
Sbjct: 204 GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNAL 263
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ +L +L+ A QITD L+AL + LT LDL I+D G L +NL+ + +
Sbjct: 264 VEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLV 323
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+T +G+K +D L+ N TD+ +E S
Sbjct: 324 EAPVTASGLKRFQDAIGTPLI---ITWNGTDQDIEAAS 358
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 3/217 (1%)
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
D+ D + L L+ L+LS TQ+ G+ LS L +L ++L+ + + +K
Sbjct: 59 DAQEFTDADVTLLKTFPELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKK 118
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L SL +L++ Q++D L + LT L L G RIT++G L F L L++
Sbjct: 119 LIELDSLTTLDVADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDL 178
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
++D G+ +K L +LT L LS N +TD LE I GL+ L L+++ ++IT AGL+
Sbjct: 179 TQTRVSDEGMTALKRLENLTELRLSGNV-ITDTGLEAIGGLSHLKILDLTATQITDAGLK 237
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
HL+ L NL L L +V N + L ++P L++
Sbjct: 238 HLRGLNNLNELKLGRNQVKDNGVNALV--EIPTLIAL 272
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 25/264 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSL----------DFNFCI-------------Q 93
L S+DLSG+ ++ G+ L +L L F I Q
Sbjct: 75 PELESLDLSGTQISGKGIAELSVLRSLTVLHLANLPVKNAQFKKLIELDSLTTLDVADTQ 134
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+SD L+ NLT+L N IT G+ + L LDL + G+ LK
Sbjct: 135 VSDAALQGSIAHPNLTTLVL-SGNRITNAGLNDLSKFGQLAILDLTQTRVSDEGMTALKR 193
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L L + N ITD+ ++ + GL++LK L ++ +++TD+G+ +L+GL L L L
Sbjct: 194 LENLTELRLS-GNVITDTGLEAIGGLSHLKILDLTATQITDAGLKHLRGLNNLNELKLGR 252
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
V +++L + +L L+ Q++D+ ++ NL +L+L I D GL NLT
Sbjct: 253 NQVKDNGVNALVEIPTLIALDFYATQITDECLSALGQIANLTTLDLGKNPISDFGLRNLT 312
Query: 274 GLCNLKCLELSDTQVGSSGLRHLS 297
L NLK + L + V +SGL+
Sbjct: 313 RLRNLKEIGLVEAPVTASGLKRFQ 336
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 31/230 (13%)
Query: 44 VNDKWMDVIASQGS----SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
V D + A QGS +L ++ LSG+ +T++GL L L LD ++SD G+
Sbjct: 130 VADTQVSDAALQGSIAHPNLTTLVLSGNRITNAGLNDLSKFGQLAILDLTQT-RVSDEGM 188
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L+ L NLT L N IT G++A GL +L LDL
Sbjct: 189 TALKRLENLTELRL-SGNVITDTGLEAIGGLSHLKILDLT-------------------- 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
ITD+ +K L GL NL L++ ++V D+G+ L + L L+ +T
Sbjct: 228 -----ATQITDAGLKHLRGLNNLNELKLGRNQVKDNGVNALVEIPTLIALDFYATQITDE 282
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
CL +L + +L L+L + +SD G +RL NL+ + L + GL
Sbjct: 283 CLSALGQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGL 332
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 28/181 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L + LSG+ +TD+GL + S+L+ LD QI+D GL+HLRGL+NL L RN
Sbjct: 195 ENLTELRLSGNVITDTGLEAIGGLSHLKILDLT-ATQITDAGLKHLRGLNNLNELKLGRN 253
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ G+ A + L+ LD + ITD + L
Sbjct: 254 Q-VKDNGVNALVEIPTLIALDF-------------------------YATQITDECLSAL 287
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNL 235
+ NL +L + + ++D G+ L L+ L + L PVTA+ L A+G+ +
Sbjct: 288 GQIANLTTLDLGKNPISDFGLRNLTRLRNLKEIGLVEAPVTASGLKRFQDAIGTPLIITW 347
Query: 236 N 236
N
Sbjct: 348 N 348
>gi|149175887|ref|ZP_01854505.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148845334|gb|EDL59679.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 360
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 4/280 (1%)
Query: 164 WCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W N I + D + ++S+ + ++ DS + +L L ++L G ++ L
Sbjct: 73 WENVIRQNRDKNQMKSFDEVESISLDVTQ--DSDLVWLNDFPNLERISLSGKGLSNTGLV 130
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L L L L +SDDG L+ L L+L + GL +L GL NL L
Sbjct: 131 HLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNLTWLN 190
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L T V ++GL+ ++ + L +NL+ T ISD L L L L L L+ Q+T TGL+
Sbjct: 191 LQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTGTGLS 250
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L+SL L L L G+ I DS ++L++FK L LE+ ++DAG+ H+ L L LN
Sbjct: 251 ELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALN 310
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
LS +TD L + GL L ++ + N+++TS GL K
Sbjct: 311 LS-GTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRK 349
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 135/238 (56%), Gaps = 7/238 (2%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
LS+ G R L+ L L + + D+GLV+L L L L+L T V SGL HL GL
Sbjct: 124 LSNTGLVHLKRFHRLKRLMLWNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGL 183
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
TNL +NL T +++ L+++ S+L+ LNL+ I+D GL L L L L L +
Sbjct: 184 TNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQ 243
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+T +G + L + L L++ G + D+ + H+K +L L L Q+ ++D L +SG
Sbjct: 244 VTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLEL-QDTQISDAGLVHLSG 302
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-----LQSRD-LP 471
L L +LN+S +++T AGL +L+ L L+++ L++ +VT+ +++ QSRD LP
Sbjct: 303 LPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQRKLILQQSRDPLP 360
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 114/218 (52%), Gaps = 1/218 (0%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GLV+LK +L+ L + W ++D + L L+ L L + + V+ SG+A+L+GL L
Sbjct: 128 GLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFYTPVSGSGLAHLQGLTNL 186
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T LNL+G VT A L ++ +L LNLN+ +SD G L L L L+ +
Sbjct: 187 TWLNLQGTAVTNAGLKQVNCFSALRVLNLNQTSISDAGLVHLRDLPQLIILQLEQTQVTG 246
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
GL L+ L L CL+L+ + + S + HL L + L T ISD L L+GL L
Sbjct: 247 TGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLL 306
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+LNL Q+TD GL L L L ++ L ++T G
Sbjct: 307 DALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEG 344
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 3/234 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+ LSG ++++GL+HLK L+ L + +SD GL HL+ LS L L ++
Sbjct: 117 ISLSGKGLSNTGLVHLKRFHRLKRLML-WNTSVSDDGLVHLKELSQLNHLDLFY-TPVSG 174
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ GL NL L+L+ + GL + L LN+ I+D+ + L L
Sbjct: 175 SGLAHLQGLTNLTWLNLQGTAVTNAGLKQVNCFSALRVLNLN-QTSISDAGLVHLRDLPQ 233
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L LQ+ ++VT +G++ L L KL L L G + + + L + +L L L Q+S
Sbjct: 234 LIILQLEQTQVTGTGLSELSSLPKLYCLKLNGSLINDSSMSHLKSFKTLIRLELQDTQIS 293
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
D G S L L++LNL + D GLV L GL LK + L +TQV S GL
Sbjct: 294 DAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLKNTQVTSEGLEQ 347
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +DL + V+ SGL HL+ +NL L+ +++ GL+ + S L L+ +
Sbjct: 160 SQLNHLDLFYTPVSGSGLAHLQGLTNLTWLNLQ-GTAVTNAGLKQVNCFSALRVLNLNQ- 217
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+I+ G+ L L+ L LE+ GL L L KL L + + I DS M L
Sbjct: 218 TSISDAGLVHLRDLPQLIILQLEQTQVTGTGLSELSSLPKLYCLKLN-GSLINDSSMSHL 276
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++ ++++D+G+ +L GL L LNL G VT A L L L L + L
Sbjct: 277 KSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLSGTQVTDAGLVYLQGLPRLKNVYLK 336
Query: 237 RCQLSDDGCEK 247
Q++ +G E+
Sbjct: 337 NTQVTSEGLEQ 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++L+ + ++D+GL+HL+D L L Q++ GL L L L L
Sbjct: 208 SALRVLNLNQTSISDAGLVHLRDLPQLIILQLE-QTQVTGTGLSELSSLPKLYCLKL-NG 265
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ I M L++L+L+ GLV+L GL L++LN+ +TD+ + L
Sbjct: 266 SLINDSSMSHLKSFKTLIRLELQDTQISDAGLVHLSGLPLLDALNLS-GTQVTDAGLVYL 324
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
GL LK++ + ++VT G+ K
Sbjct: 325 QGLPRLKNVYLKNTQVTSEGLEQRK 349
>gi|330842680|ref|XP_003293301.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
gi|325076385|gb|EGC30175.1| hypothetical protein DICPUDRAFT_158109 [Dictyostelium purpureum]
Length = 684
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 12/364 (3%)
Query: 49 MDVIASQGSSLLSVDLSGSD-VTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
++ I S G + +DLS + ++ +H + +Q ++F+ CI ++D GLE +
Sbjct: 276 LNQILSSGVRVFKLDLSNQSLIVNNDFLHNCFRYLVEVQDVNFSNCINMTDYGLEVFKNE 335
Query: 106 S---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
NL L R N +T G K L+NL +L L + G+ LK L+ L++L++
Sbjct: 336 KFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVAFLKQLVNLKTLDV 395
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGC-PVTAAC 220
C ITD+ M +S + L L +S +++TD I+ + L + L L C +T
Sbjct: 396 SRCK-ITDNAMVTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKS 454
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLK 279
L L+ + L++ Q+S +G RL NL L L + + D+ +V L L LK
Sbjct: 455 LFFLTYFSKMRLLSITGTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLK 514
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+L+D +S + L L LE + L+ T + D S+ + + SL+ L+LD IT
Sbjct: 515 KLDLTDYTYITS-IEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITSA 573
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G+A L L L L L +I D YL K+LR L I +T ++ +KD+++L
Sbjct: 574 GVAGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITNLN 632
Query: 400 LLNL 403
L+L
Sbjct: 633 SLDL 636
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 7/245 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL 102
+ D M V S S L ++LS + +TD + ++ +N+Q L + C ++++ L L
Sbjct: 400 ITDNAM-VTISLFSKLTLLNLSETQITDVAISNIHQILTNIQYLYLSNCQKLTNKSLFFL 458
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLN 161
S + LS I+ G L NL+ L+L R +V L L KL+ L+
Sbjct: 459 TYFSKMRLLSIT-GTQISLNGFVHLKRLPNLLYLELPNRYCLNDQTIVYLNSLTKLKKLD 517
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ IT ++PL L L+ L ++ ++V DS + +K ++ L +L+L+ +T+A +
Sbjct: 518 LTDYTYITS--IEPLDNLKYLEELLLANTRVGDSSVPAIKKMKSLEVLSLDRTDITSAGV 575
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
L L +L L+L + ++ DD S + +L LN+ I + + L + NL L
Sbjct: 576 AGLVDL-NLKSLSLMKTKIDDDSINYLSEIKSLRQLNISHNNITHKNIEKLKDITNLNSL 634
Query: 282 ELSDT 286
+L T
Sbjct: 635 DLRGT 639
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 383 GLTDAGVKHIKDLS---SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+TD G++ K+ +L +L+L N NLTD + + L L L + ++ I+ G+
Sbjct: 323 NMTDYGLEVFKNEKFHRNLRVLDLRHNRNLTDVGCKNLKNLVNLEELYLGSTSISDLGVA 382
Query: 440 HLKPLKNLRSLTLESCKVTAN 460
LK L NL++L + CK+T N
Sbjct: 383 FLKQLVNLKTLDVSRCKITDN 403
>gi|149177419|ref|ZP_01856023.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148843752|gb|EDL58111.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 375
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 28/290 (9%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
++ G + A L ++ L L L LN ++D E ++T LE+L+L +C + ++
Sbjct: 77 VDFRGTKIDDAALKEIAGLSHLRSLLLNETPITDAALESVGKVTTLENLDLRNCSLNNKA 136
Query: 269 LVNLTGLCNLKCLELSDTQ-------------------------VGSSGLRHLSGLTNLE 303
+ LTGL LK L LS V GL L L LE
Sbjct: 137 ISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLNKLE 196
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITD 362
+ L+ T + D L L LK L QI+D GLA + L +DL + ++D
Sbjct: 197 ELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSD 256
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+G +L L+ L + GLTDAGV+ ++ L+SL LNL N LT+ L+ + +
Sbjct: 257 AGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLD-NTRLTNAGLKYLKDMQK 315
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L L++ ++ ++ GL+HL+PL +L+ L L VT + L+ + LPN
Sbjct: 316 LEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAELKKK-LPN 364
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 6/283 (2%)
Query: 133 LVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
++++D R T+I L + GL L SL + ITD+ ++ + +T L++L +
Sbjct: 74 VIEVDF-RGTKIDDAALKEIAGLSHLRSLLLNET-PITDAALESVGKVTTLENLDLRNCS 131
Query: 192 VTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+ + I+YL GL KL L L G + + ++ L +L L L+ +S DG +
Sbjct: 132 LNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKD 191
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L LE L L + D+GL LT LK LS Q+ GL + + LE I+LS
Sbjct: 192 LNKLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSEN 251
Query: 311 GI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+ SD ++ L+GL LK LNL +TD G+ L LT L L+L R+T++G YL+
Sbjct: 252 SLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLK 311
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+ + L L + ++D G+KH++ L+SL L L++ +T+K
Sbjct: 312 DMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTA-VTEK 353
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 153/309 (49%), Gaps = 25/309 (8%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
+DF +I D L+ + GLS+L SL IT +++ + L LDL C+
Sbjct: 76 EVDFR-GTKIDDAALKEIAGLSHLRSL-LLNETPITDAALESVGKVTTLENLDLRNCSLN 133
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + L GL KL++L + + I D M ++ LTNLK+L + V+ G++ LK L
Sbjct: 134 NKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDGLSQLKDLN 193
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
KL L L V L +L+ L L++ Q+SD+G F+++ LE ++L +
Sbjct: 194 KLEELYLAKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSL 253
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
LSD +G++HLSGL L+ +NL G++D + L GL+
Sbjct: 254 ------------------LSD-----AGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLT 290
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
SL+ LNLD ++T+ GL L + L L L ++D G +L +L+ L++ +
Sbjct: 291 SLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAV 350
Query: 385 TDAGVKHIK 393
T+ GV +K
Sbjct: 351 TEKGVAELK 359
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 146/295 (49%), Gaps = 17/295 (5%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
FR + D L + G+ S L S+ L+ + +TD+ L + + L++LD
Sbjct: 79 FRGTKIDDAALKEIAGL------------SHLRSLLLNETPITDAALESVGKVTTLENLD 126
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
C +++ + +L GLS L +L N+ I M L NL L L+ G
Sbjct: 127 LRNC-SLNNKAISYLTGLSKLKALRLSGNSDIDDDAMADINQLTNLKALMLDFLWVSGDG 185
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L LK L KLE L + + D D + L+ LK ++S ++++D G+A + +L
Sbjct: 186 LSQLKDLNKLEELYL--AKTLVDDDGLATLTQFPKLKKTRLSQNQISDEGLAVFAKIPQL 243
Query: 207 TLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
++L E ++ A + LS LG L LNL R L+D G E LT+LE LNLD+ +
Sbjct: 244 EEIDLSENSLLSDAGMKHLSGLGKLKKLNLWRVGLTDAGVEPLQGLTSLEWLNLDNTRLT 303
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
+ GL L + L+ L L T V GL+HL LT+L+ + L+ T +++ + +L
Sbjct: 304 NAGLKYLKDMQKLEFLHLGSTAVSDEGLKHLEPLTSLKELKLTRTAVTEKGVAEL 358
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+Q L LS + ++D GL L+ +D + +SD G++HL GL L L+
Sbjct: 214 TQFPKLKKTRLSQNQISDEGLAVFAKIPQLEEIDLSENSLLSDAGMKHLSGLGKLKKLNL 273
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
R +T G++ GL +L L+L+ + GL LK + KLE L++ ++D +
Sbjct: 274 WR-VGLTDAGVEPLQGLTSLEWLNLDNTRLTNAGLKYLKDMQKLEFLHLG-STAVSDEGL 331
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLK 201
K L LT+LK L+++ + VT+ G+A LK
Sbjct: 332 KHLEPLTSLKELKLTRTAVTEKGVAELK 359
>gi|320164611|gb|EFW41510.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 853
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 168/367 (45%), Gaps = 3/367 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL+ LT LS N IT+ + AFAGL L +LDL
Sbjct: 69 QITGIAPSAFTGLTALTVLSLSYNQ-ITSIPVSAFAGLDALTRLDLSSNLITSISASAFP 127
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L LN++ N IT +GLT L+ L +S +++T GL +TL+ L+
Sbjct: 128 SLTALTELNLQG-NLITSIPASLFTGLTALRWLPLSNNQITSIAANAFNGLSAVTLIYLQ 186
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+T + + L +L L L Q++ F+ LT+LE+L+L I +
Sbjct: 187 TNQITDLSPATFTGLAALTELYLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAF 246
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
T L L L L D Q+ +GLT LE +NL I++ A L++L++LNL
Sbjct: 247 TDLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQ 306
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QIT +A LT L LDL IT A+ L L++ +TD
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L++L +L L N +T+ + +GLT L L++S+ +ITS + L LR L L
Sbjct: 367 ASLTALAVLELQSN-QITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYL 425
Query: 453 ESCKVTA 459
++T+
Sbjct: 426 HFNQITS 432
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 160/364 (43%), Gaps = 13/364 (3%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLM 155
GL LR L NN IT+ AF GL + L+ L + T + GL
Sbjct: 152 GLTALRWLP-------LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPA--TFTGLA 202
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L + N IT +GLT+L++L + +K+T+ + L LT L L+
Sbjct: 203 ALTELYLMG-NQITSIHASTFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQ 261
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T + + L L LNL Q+++ F+ LT LE+LNL I L
Sbjct: 262 ITEIPASAFAGLTVLEILNLQGNQITNIPETVFADLTALETLNLQDNQITSIPASAFADL 321
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L+ L+L D + S +GL+ L + L I+D S A L++L L L + Q
Sbjct: 322 TALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTALAVLELQSNQ 381
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT+ A T LT LT LDL +IT + LR L + +T L
Sbjct: 382 ITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSIPASAFTGL 441
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++L +L L+ N +T +GLT L +L +S + ITS L +L L L +
Sbjct: 442 TALYVLILAYN-QITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSLFFLILNNN 500
Query: 456 KVTA 459
++T+
Sbjct: 501 QITS 504
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 140/320 (43%), Gaps = 7/320 (2%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E T I G+ +++L S N IT +GLT L L +S +++T ++
Sbjct: 47 ETLTTIPTGIPVDTTMLRLSS------NQITGIAPSAFTGLTALTVLSLSYNQITSIPVS 100
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
GL LT L+L +T+ + +L +L LNL ++ F+ LT L L
Sbjct: 101 AFAGLDALTRLDLSSNLITSISASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLP 160
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
L + I GL + + L Q+ +GL L + L I+
Sbjct: 161 LSNNQITSIAANAFNGLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIHAS 220
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
AGL+SL++L+L +IT+ +A T L+ LT L L +IT+ A+ L L
Sbjct: 221 TFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDNQITEIPASAFAGLTVLEILN 280
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ G +T+ DL++L LNL N +T + LT L SL++ ++ ITS
Sbjct: 281 LQGNQITNIPETVFADLTALETLNLQDN-QITSIPASAFADLTALRSLDLQDNNITSIPA 339
Query: 439 RHLKPLKNLRSLTLESCKVT 458
L L L L + K+T
Sbjct: 340 SVFTGLSALNELKLHTNKIT 359
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 150/353 (42%), Gaps = 35/353 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---ISDGGLEHLRGLSNLTSLSF 113
++L + L G+ +T IH + L SL+ N +Q I++ LS LT L+
Sbjct: 202 AALTELYLMGNQITS---IHASTFAGLTSLE-NLDLQDNKITEVPASAFTDLSALTGLTL 257
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIK-------- 163
+ +N IT AFAGL L L+L+ + T I + L LE+LN++
Sbjct: 258 Q-DNQITEIPASAFAGLTVLEILNLQGNQITNIPETV--FADLTALETLNLQDNQITSIP 314
Query: 164 ---------------WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
N IT +GL+ L L++ +K+TD + L L +
Sbjct: 315 ASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVFASLTALAV 374
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L L+ +T ++ + L +L L+L+ CQ++ + F+ LT L L L I
Sbjct: 375 LELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLHFNQITSIP 434
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
TGL L L L+ Q+ S +GLT L ++ LSF I+ S L+SL
Sbjct: 435 ASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTFTDLTSLFF 494
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L L+ QIT A L GL +L L T + N SL + G
Sbjct: 495 LILNNNQITSISANAFAGLPGLKYLVLSDNPFTTLPPGLFQGLPNGLSLSLSG 547
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 31/292 (10%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L++S +++T + GL LT+L+L +T+ + + + L +L L+L+ ++
Sbjct: 63 LRLSSNQITGIAPSAFTGLTALTVLSLSYNQITSIPVSAFAGLDALTRLDLSSNLITSIS 122
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
F LT L LNL I TGL L+ L LS+ Q+
Sbjct: 123 ASAFPSLTALTELNLQGNLITSIPASLFTGLTALRWLPLSNNQI---------------- 166
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
T I+ + GLS++ + L QITD A T L LT L L G +IT
Sbjct: 167 -----TSIAANAFN---GLSAVTLIYLQTNQITDLSPATFTGLAALTELYLMGNQITSIH 218
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A+ +L +L++ +T+ DLS+LT L L N +T+ +GLT L
Sbjct: 219 ASTFAGLTSLENLDLQDNKITEVPASAFTDLSALTGLTLQDN-QITEIPASAFAGLTVLE 277
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
LN+ ++IT+ L L +L L+ ++T+ D+ L+S DL
Sbjct: 278 ILNLQGNQITNIPETVFADLTALETLNLQDNQITSIPASAFADLTALRSLDL 329
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 146/361 (40%), Gaps = 27/361 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+D GL+ LT L + N IT+ FAGL +L LDL+ + T +
Sbjct: 189 QITDLSPATFTGLAALTEL-YLMGNQITSIHASTFAGLTSLENLDLQDNKITEVPASAFT 247
Query: 151 ----------------------LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
GL LE LN++ N IT+ + LT L++L +
Sbjct: 248 DLSALTGLTLQDNQITEIPASAFAGLTVLEILNLQG-NQITNIPETVFADLTALETLNLQ 306
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++T + L L L+L+ +T+ + L +L L L+ +++D F
Sbjct: 307 DNQITSIPASAFADLTALRSLDLQDNNITSIPASVFTGLSALNELKLHTNKITDLSASVF 366
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ LT L L L S I + TGL L L+LS Q+ S + + LT L + L
Sbjct: 367 ASLTALAVLELQSNQITEISANAFTGLTALTKLDLSSCQITSFSVDAFTSLTALRDLYLH 426
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
F I+ GL++L L L QIT T LT L L L IT A
Sbjct: 427 FNQITSIPASAFTGLTALYVLILAYNQITSLPTNTFTGLTALNTLTLSFNPITSISANTF 486
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ +L L + +T L L L LS N T L GL +SL++
Sbjct: 487 TDLTSLFFLILNNNQITSISANAFAGLPGLKYLVLSDN-PFTTLPPGLFQGLPNGLSLSL 545
Query: 429 S 429
S
Sbjct: 546 S 546
>gi|168704615|ref|ZP_02736892.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 294
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 134/250 (53%), Gaps = 2/250 (0%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
GS+ L L +++D ++ + +L L+L + D GL LT L L LS T+
Sbjct: 47 GSVIELWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V +GL+ ++ LT+LE + L T ++D + +L L L L L +ITD + L
Sbjct: 107 VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKL 166
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
GLT L L GA+IT G + SL + G +++AG+K I SL +L LS+ C
Sbjct: 167 KGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSE-C 225
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+TD L+ ++ L L +L++ +++T AG++ L LK L+ L L S +VT +K +++
Sbjct: 226 KITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Query: 468 RDLPNLVSFR 477
LP + F+
Sbjct: 286 A-LPKCLVFK 294
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+D+K L+ +L L + ++V+D+G+ L + LT L L VT A L ++ L
Sbjct: 59 IADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAGLKDVAKL 118
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L L+ ++D G + L L L L I D N+ L L L L +
Sbjct: 119 THLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTTLRLDGAK 178
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ GL+ ++ + S+ LS T IS+ L+++A SL+ L L +ITD GL L +L
Sbjct: 179 ITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGGLKELAAL 238
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
LT L L ++TD+G L + K L+ L + +TDAGVK I++
Sbjct: 239 DKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIRN 285
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 1/234 (0%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L LEG + A L L+A L L+L Q+SD G ++ + L L L + D G
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L ++ L +L+ L L +T V +G+ L L L + L T I+D + + +A L L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L LD +IT GL + ++ G L L G I+++G + FK+LR L++ +TD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+K + L LT L+L + +TD ++ ++ L L L+++++++T AG++ ++
Sbjct: 232 LKELAALDKLTTLHL-EKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 7/239 (2%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++ + L G+ + D+ L L +L L + Q+SD GL+ L LT L R
Sbjct: 48 SVIELWLEGTKIADADLKELAAFKHLAVLSL-YDTQVSDAGLKELTSSKGLTELLLSRTK 106
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKP 175
+T G+K A L +L KL L+ G+ L L +L L W ITD+ K
Sbjct: 107 -VTDAGLKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSEL---WLMGTKITDAAFKN 162
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ L L +L++ +K+T G+ + + L L G ++ A L ++A SL L L
Sbjct: 163 VAKLKGLTTLRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQL 222
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ C+++D G ++ + L L +L+L+ + D G+ +L L LK L L+ TQV +G++
Sbjct: 223 SECKITDGGLKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLTSTQVTDAGVK 281
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 1/233 (0%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + +K+ D+ + L + L +L+L V+ A L L++ L L L+R +++D G
Sbjct: 52 LWLEGTKIADADLKELAAFKHLAVLSLYDTQVSDAGLKELTSSKGLTELLLSRTKVTDAG 111
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ ++LT+LE L LD + D G+ L L L L L T++ + ++++ L L +
Sbjct: 112 LKDVAKLTHLEKLALDETAVTDAGIGELVPLKRLSELWLMGTKITDAAFKNVAKLKGLTT 171
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ L I+ L+++A + SL L I++ GL + + L L L +ITD G
Sbjct: 172 LRLDGAKITGVGLKQVAAIDGFHSLYLSGTDISEAGLKEIAAFKSLRILQLSECKITDGG 231
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
L L +L + +TDAGVK + L L +L+L+ + +TD ++ I
Sbjct: 232 LKELAALDKLTTLHLEKTQVTDAGVKSLASLKKLKVLHLT-STQVTDAGVKTI 283
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ +TD+ ++ L +L + +I+ GL+ + + SL + I+ G
Sbjct: 150 LMGTKITDAAFKNVAKLKGLTTLRLDGA-KITGVGLKQVAAIDGFHSL-YLSGTDISEAG 207
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K A +L L L C GGL L L KL +L+++ +TD+ +K L+ L LK
Sbjct: 208 LKEIAAFKSLRILQLSECKITDGGLKELAALDKLTTLHLEKTQ-VTDAGVKSLASLKKLK 266
Query: 184 SLQISCSKVTDSGIAYLK 201
L ++ ++VTD+G+ ++
Sbjct: 267 VLHLTSTQVTDAGVKTIR 284
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S+ LSG+D++++GL + +L+ L + C +I+DGGL+ L L LT+L + +T
Sbjct: 195 SLYLSGTDISEAGLKEIAAFKSLRILQLSEC-KITDGGLKELAALDKLTTLHLEKTQ-VT 252
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
G+K+ A L L L L G+ ++
Sbjct: 253 DAGVKSLASLKKLKVLHLTSTQVTDAGVKTIR 284
>gi|290999671|ref|XP_002682403.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284096030|gb|EFC49659.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 403
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 149/301 (49%), Gaps = 1/301 (0%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ L+ ++SL C + +K +S L L L I S + D G+ Y+ L++LT L++
Sbjct: 104 RKLILMKSLTKLIIRCDDEEGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSI 163
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
++ L L L L + ++ ++G + S L L +L++D IG EG
Sbjct: 164 PSNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKY 223
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L+ L L CL++S +G G +++S + L +++++ I + + ++ L+ LK+L++
Sbjct: 224 LSELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDI 283
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D GL L L LDL RI D GA YL K L L+I L D G
Sbjct: 284 CKNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMP 343
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I +L L L ++ N + ++ + IS L L L++ N+ IT G ++ +K L LT
Sbjct: 344 IGELKKLIYLYINNN-KIRNEGAKYISELKQLTKLDIRNNFITEEGTKYFTEMKQLIDLT 402
Query: 452 L 452
+
Sbjct: 403 I 403
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 4/294 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L R ++ +G+K + L L KL + G+ + L +L L+I
Sbjct: 109 MKSLTKLIIRCDDE---EGVKYISELKQLTKLTIYGSHIGDEGVRYISELKQLTYLSIP- 164
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I++ K L L L +L I C++V + G Y+ L++LT L+++ + A L
Sbjct: 165 SNGISEYGAKHLRELKQLTTLIIFCNRVGNEGSKYISELKQLTTLSIDENDIGAEGAKYL 224
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
S L L L+++ L D+G + S++ L +L+++S IG+EG ++ L LK L++
Sbjct: 225 SELTQLTCLDISSNWLGDEGAKYVSKMKQLTTLHINSNRIGNEGSKFISSLNQLKNLDIC 284
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+G GL + L L+S++LS+ I D + L+ L L L++ + D G +
Sbjct: 285 KNDIGDEGLEYFGQLAQLKSLDLSYNRIGDEGAQYLSELKQLIYLDIKTNHLGDKGAMPI 344
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L +L + +I + GA Y+ K L L+I +T+ G K+ ++ L
Sbjct: 345 GELKKLIYLYINNNKIRNEGAKYISELKQLTKLDIRNNFITEEGTKYFTEMKQL 398
>gi|290997674|ref|XP_002681406.1| predicted protein [Naegleria gruberi]
gi|284095030|gb|EFC48662.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 209/427 (48%), Gaps = 12/427 (2%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI 94
D+ Q V K++ S+ L S+D+ + + G + L SLD QI
Sbjct: 8 DIGENQIGAVGAKFI----SEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGGN-QI 62
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLK 152
D G + + + LTSLS NN I A G + + + L LD+ C G G+ ++
Sbjct: 63 GDEGAKFISEMKQLTSLSIY-NNLIGAVGFEFISEMKQLTSLDI--CYNEIGDEGVKSIC 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SL+I + N I D +K +S + L SL I+ +++ G + +++LT L++
Sbjct: 120 EMKQLTSLSI-YNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIY 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
A +S + L L+++ ++ +G + S + L SLN+ IG EG+ +
Sbjct: 179 NNQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLI 238
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ + L L++ ++G G + +S + L S+N+ I D + ++ + L SL
Sbjct: 239 SEMKQLTSLDIGGNEIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSLGAY 298
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I G ++ + LT L++ +I D GA + K L SL+I + D GVK I
Sbjct: 299 NNEIGVEGTKLISEMKQLTSLNISKNQIGDEGAKLISEMKQLASLDIYYNEIGDEGVKLI 358
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ L LN+S+N + D+ +LIS + L SL++ + I G++ + +K L SL++
Sbjct: 359 SEMKQLKSLNISKN-QIGDEGAKLISEMKQLTSLDIHFNEIGDEGVKLISEMKQLTSLSI 417
Query: 453 ESCKVTA 459
+ K+ +
Sbjct: 418 YNQKMKS 424
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 144/297 (48%), Gaps = 2/297 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L+SL+I N I K +S + L SL I +++ G + +++LT L++ G
Sbjct: 1 MKQLKSLDI-GENQIGAVGAKFISEMKQLTSLDIIYNRIGAVGAKLISKMKQLTSLDIGG 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ +S + L L++ + G E S + L SL++ IGDEG+ ++
Sbjct: 60 NQIGDEGAKFISEMKQLTSLSIYNNLIGAVGFEFISEMKQLTSLDICYNEIGDEGVKSIC 119
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L + + ++G G++ +S + L S++++ I + + + L SL++
Sbjct: 120 EMKQLTSLSIYNNRIGDEGVKFISEMKQLTSLDINNNRIGVQGAKSICEMKQLTSLSIYN 179
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
Q G ++ + LT LD+ I GA ++ K L SL IC + GVK I
Sbjct: 180 NQTGAVGAKFISEMKQLTSLDISVNEIGVEGAKFISEMKQLTSLNICYNRIGAEGVKLIS 239
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++ LT L++ N + D+ + IS + L SLN+ ++I G + + +K L SL
Sbjct: 240 EMKQLTSLDIGGN-EIGDEGAKFISEMKQLTSLNICENQIGDEGAKSISEMKQLTSL 295
>gi|59802548|gb|AAX07514.1| putative regulatory subunit [Gemmata sp. Wa1-1]
Length = 250
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
VT A L L+ L +L LNL +++D G ++ S LT L L L + D GL L L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL LEL TQV +GL+ L+ LTNL + L T ++D L++LA L SL L L Q
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT+ G+ L T LT LDL R+TD+G L F L L + G +TD +K + L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 396 SSLTLLNLSQN 406
+L L+LS+N
Sbjct: 211 KNLAFLSLSRN 221
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 110/199 (55%), Gaps = 2/199 (1%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+D+K L+ L NL L + +KVTD+G+ L L KLT L L VT A L L+ L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L L L Q++D G ++ + LTNL L L S + D GL L L +L LEL +TQ
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ +G++ L+ T L ++LS T ++D ++ LA + L LNL +TDT L L L
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPL 210
Query: 348 TGLTHLDLFGARITDSGAA 366
L L L +R GAA
Sbjct: 211 KNLAFLSL--SRNERDGAA 227
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 107/196 (54%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+ + KVTD+ + L L+ LT LNL VT A L LS L L +L L + +++D
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G ++ + LTNL +L L S + D GL L L NL L L TQV +GL+ L+ L +L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLT 142
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L T I++ +++LA + L L+L ++TD G+ L T LT L+L G +TD+
Sbjct: 143 LLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDT 202
Query: 364 GAAYLRNFKNLRSLEI 379
L KNL L +
Sbjct: 203 CLKDLAPLKNLAFLSL 218
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+ D L L L NL L L T+V +GL+ LS LT L + L T ++D L++LA L
Sbjct: 31 VTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAPL 90
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
++L +L L + Q+TD GL L LT LT L L ++TD+G L K+L LE+
Sbjct: 91 TNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQ 150
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+T+AG+K + + LT L+LS +TD ++ ++ T L LN+ + +T L+ L P
Sbjct: 151 ITEAGIKELAPFTKLTRLDLSIT-RVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAP 209
Query: 444 LKNLRSLTL 452
LKNL L+L
Sbjct: 210 LKNLAFLSL 218
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 112/200 (56%), Gaps = 2/200 (1%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+++D ++ + L NL LNL + D GL L+ L L L L T+V +GL+ L+
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNL ++ L T ++D L++LA L++L L L + Q+TD GL L L LT L+L
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+IT++G L F L L++ +TDAGVK + + LT LNL +TD L+ ++
Sbjct: 150 QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTL-VTDTCLKDLA 208
Query: 419 GLTGLVSLNVS-NSRITSAG 437
L L L++S N R +AG
Sbjct: 209 PLKNLAFLSLSRNERDGAAG 228
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 1/172 (0%)
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+V + L+ L+ L NL +NL T ++D L++L+ L+ L L L ++TD GL L
Sbjct: 30 KVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDAGLKELAP 89
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LT L+L ++TD+G L NL L + +TDAG+K + L SLTLL L +
Sbjct: 90 LTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGET 149
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+T+ ++ ++ T L L++S +R+T AG++ L P L L L VT
Sbjct: 150 -QITEAGIKELAPFTKLTRLDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVT 200
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S++ + ++D L++LA L +L LNL ++TD GL L+ LT LTHL L ++TD+
Sbjct: 23 SVDFALWKVTDADLKELAPLKNLTQLNLCLTKVTDAGLKELSPLTKLTHLCLMQTKVTDA 82
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G L NL +LE+ +TDAG+K + L++LT+L L + +TD L+ ++ L L
Sbjct: 83 GLKELAPLTNLTTLELGSTQVTDAGLKELAPLTNLTVLTLG-STQVTDAGLKELAPLKSL 141
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L + ++IT AG++ L P L L L +VT +K L
Sbjct: 142 TLLELGETQITEAGIKELAPFTKLTRLDLSITRVTDAGVKGL 183
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 123/259 (47%), Gaps = 30/259 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLS 112
+ G ++SVD + VTD+ L L NL L N C+ +++D GL+ L L+ LT L
Sbjct: 16 APGKPVISVDFALWKVTDADLKELAPLKNLTQL--NLCLTKVTDAGLKELSPLTKLTHLC 73
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ +T G+K A L NL L+L +TD+
Sbjct: 74 LMQTK-VTDAGLKELAPLTNLTTLEL-------------------------GSTQVTDAG 107
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L+ LTNL L + ++VTD+G+ L L+ LTLL L +T A + L+ L
Sbjct: 108 LKELAPLTNLTVLTLGSTQVTDAGLKELAPLKSLTLLELGETQITEAGIKELAPFTKLTR 167
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSS 291
L+L+ +++D G + + T L LNL + D L +L L NL L LS + + G++
Sbjct: 168 LDLSITRVTDAGVKGLAPFTKLTQLNLGGTLVTDTCLKDLAPLKNLAFLSLSRNERDGAA 227
Query: 292 GLRHLSGLTNLESINLSFT 310
G G T S +L+ +
Sbjct: 228 GASRELGTTLRPSPDLNLS 246
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 19 CLTEVSLEAFRDCA----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
CLT+V+ ++ + L LCL Q V D + +A ++L +++L + VTD+GL
Sbjct: 51 CLTKVTDAGLKELSPLTKLTHLCLMQT-KVTDAGLKELAPL-TNLTTLELGSTQVTDAGL 108
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L +NL L Q++D GL+ L L +LT L IT G+K A L
Sbjct: 109 KELAPLTNLTVLTLG-STQVTDAGLKELAPLKSLTLLELGETQ-ITEAGIKELAPFTKLT 166
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+LDL G+ L KL LN+ +TD+ +K L+ L NL L +S
Sbjct: 167 RLDLSITRVTDAGVKGLAPFTKLTQLNL-GGTLVTDTCLKDLAPLKNLAFLSLS 219
>gi|149176763|ref|ZP_01855374.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148844404|gb|EDL58756.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 416
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 6/275 (2%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+TD G YLK QKL L + G +T L+ L+ + SL L L+ ++ D +
Sbjct: 129 ITDQGATYLKQ-QKLGHLGITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPP-NTF 186
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L+ L+L ++GL NL+ +L L LS+T V S+GL+ LS NL ++ L
Sbjct: 187 PKLKMLDLSDTRFTNQGLKNLSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLK 246
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I + KLA + L L+L + D L+ L +T L L ++ITD G +L
Sbjct: 247 IKAAAFAKLANMKRLYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATM 306
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
KNL +L + G +TD+G+K + L L L+LS + ++D+ L +S + L LN+SN+
Sbjct: 307 KNLETLFLPGAKITDSGLKVLSQLPKLDYLDLS-DTQISDEGLRQLSKIPALRMLNLSNT 365
Query: 432 RITSAG---LRHLKPLKNLRSLTLESCKVTANDIK 463
R+T L L+++ + VT DI+
Sbjct: 366 RVTDQAKQILLQFPALESIEAFNTSISPVTIEDIR 400
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 4/255 (1%)
Query: 144 IHGGLVNLKGLMKLESLN----IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
I GG + GL +L +N + + D P + LK L +S ++ T+ G+
Sbjct: 147 ITGGSMTDNGLNELAEMNSLRTLGLHHLAITGDQLPPNTFPKLKMLDLSDTRFTNQGLKN 206
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L L+L V++A L LS +L L L ++ K + + L L+L
Sbjct: 207 LSPNASLVYLHLSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDL 266
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ D + L+ L + L L +Q+ GLRHL+ + NLE++ L I+D L+
Sbjct: 267 QGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKV 326
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ L L L+L QI+D GL L+ + L L+L R+TD L F L S+E
Sbjct: 327 LSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPALESIEA 386
Query: 380 CGGGLTDAGVKHIKD 394
++ ++ I+D
Sbjct: 387 FNTSISPVTIEDIRD 401
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 42/315 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLS------VDLSGSDVTDSGLIHLKDCSNLQS 85
++Q+L LG N +I QG++ L + ++G +TD+GL L + ++L++
Sbjct: 114 SIQNLTLG-----NPHNPTIITDQGATYLKQQKLGHLGITGGSMTDNGLNELAEMNSLRT 168
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L GL HL AIT + L LDL +
Sbjct: 169 L-----------GLHHL---------------AITGDQLPP-NTFPKLKMLDLSDTRFTN 201
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL NL L L++ N ++ + ++ LS NL++L++ K+ + A L +++
Sbjct: 202 QGLKNLSPNASLVYLHLSNTN-VSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKR 260
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L L+L+G V A LS L + L L++ Q++D G + + NLE+L L I
Sbjct: 261 LYQLDLQGTAVNDAVALQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKIT 320
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS---LRKLAG 322
D GL L+ L L L+LSDTQ+ GLR LS + L +NLS T ++D + L +
Sbjct: 321 DSGLKVLSQLPKLDYLDLSDTQISDEGLRQLSKIPALRMLNLSNTRVTDQAKQILLQFPA 380
Query: 323 LSSLKSLNLDARQIT 337
L S+++ N +T
Sbjct: 381 LESIEAFNTSISPVT 395
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 9/239 (3%)
Query: 239 QLSDDGCEKFSRLTNLESLNL----DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
Q+ DD + L ++++L L + I D+G L L L ++ + +GL
Sbjct: 100 QVDDDFLLELGNLHSIQNLTLGNPHNPTIITDQGATYLKQ-QKLGHLGITGGSMTDNGLN 158
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ + +L ++ L I+ L LK L+L + T+ GL L+ L +L
Sbjct: 159 ELAEMNSLRTLGLHHLAITGDQLPP-NTFPKLKMLDLSDTRFTNQGLKNLSPNASLVYLH 217
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L ++ +G L F NLR+L + + A + ++ L L+L Q + D
Sbjct: 218 LSNTNVSSAGLQELSKFPNLRALRLGNLKIKAAAFAKLANMKRLYQLDL-QGTAVNDAVA 276
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+S L + L + S+IT GLRHL +KNL +L L K+T + +K L LP L
Sbjct: 277 LQLSQLDQITQLRLDQSQITDQGLRHLATMKNLETLFLPGAKITDSGLKVLSQ--LPKL 333
>gi|290984863|ref|XP_002675146.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284088740|gb|EFC42402.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 458
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 174/355 (49%), Gaps = 8/355 (2%)
Query: 81 SNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
N+QSL+ N D LE + L+NLT S RN +G K L L L++E
Sbjct: 102 QNIQSLNVNQYFNTFDCHVLEFMGSLNNLTIRSKIRN-----EGAKCIPQLKQLTNLNVE 156
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ G+ L L + NI+ N I D K +S ++ L + I + + + G Y
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEY 215
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+ +++LT LN+ G + +S + L +L++ L + G + S++ L L +
Sbjct: 216 ISQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFI 275
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ + + G ++ L L L + +G +G R+++ + L +++ I + R
Sbjct: 276 EGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARH 335
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L ++ L +LN+ ++ G ++ + LT LD+F I D GA ++ KNLR L+I
Sbjct: 336 LKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDI 395
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
+TD G K++ L+ LT L+++ N NL+D+ + I+ +T L L++ + I+
Sbjct: 396 GRNNITDEGAKYVSQLNQLTHLSITYN-NLSDEGAKYINTMTQLTKLDIGGNAIS 449
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 151/306 (49%), Gaps = 6/306 (1%)
Query: 154 LMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L ++SLN+ ++ N D L + +L +L I SK+ + G + L++LT LN+E
Sbjct: 101 LQNIQSLNVNQYFNTF---DCHVLEFMGSLNNLTIR-SKIRNEGAKCIPQLKQLTNLNVE 156
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ + S L L N+ ++ D+G + S+++ L +N+ + IG+ G +
Sbjct: 157 DNKIGNEGVKCFSELKHLTNFNIRNNKIMDEGAKYISQMSQLTCMNIGNNNIGEPGAEYI 216
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ + L L + ++G G RH+S + L +++ + + + + L+ + L L ++
Sbjct: 217 SQMKQLTNLNIHGNRIGDKGARHISEMEGLTHLDIGYNNLGNLGSQYLSQMKKLTYLFIE 276
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++ + G ++ L LT L + I +GA Y+ K L L I G + + G +H+
Sbjct: 277 GNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLTDLSIGGAKIGEEGARHL 336
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K ++ LT LN+ N L + IS + L SL++ + I G +H+ LKNLR L +
Sbjct: 337 KTMNQLTNLNIGYN-RLGSIGAKFISEMKQLTSLDIFYNNIEDEGAKHISELKNLRKLDI 395
Query: 453 ESCKVT 458
+T
Sbjct: 396 GRNNIT 401
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 6/311 (1%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LK +NL D +I + G++ L +LT+ + R NN I +G K + + L
Sbjct: 146 QLKQLTNLNVEDN----KIGNEGVKCFSELKHLTNFNIR-NNKIMDEGAKYISQMSQLTC 200
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+++ G + + +L +LNI N I D + +S + L L I + + +
Sbjct: 201 MNIGNNNIGEPGAEYISQMKQLTNLNIHG-NRIGDKGARHISEMEGLTHLDIGYNNLGNL 259
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G YL ++KLT L +EG + +S L L L + + +G + + L
Sbjct: 260 GSQYLSQMKKLTYLFIEGNRLDENGAKFVSELKQLTILCIGANGIGPNGARYITEMKQLT 319
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L++ IG+EG +L + L L + ++GS G + +S + L S+++ + I D
Sbjct: 320 DLSIGGAKIGEEGARHLKTMNQLTNLNIGYNRLGSIGAKFISEMKQLTSLDIFYNNIEDE 379
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ ++ L +L+ L++ ITD G ++ L LTHL + ++D GA Y+ L
Sbjct: 380 GAKHISELKNLRKLDIGRNNITDEGAKYVSQLNQLTHLSITYNNLSDEGAKYINTMTQLT 439
Query: 376 SLEICGGGLTD 386
L+I G ++D
Sbjct: 440 KLDIGGNAISD 450
>gi|290977929|ref|XP_002671689.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284085260|gb|EFC38945.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 434
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 155/303 (51%), Gaps = 5/303 (1%)
Query: 179 LTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
NLK L+I + D G + ++ LT LN+ C +T+ + + L L YLN+
Sbjct: 117 FPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNVLDCGITSKGAEFIGLLNGLTYLNIGN 176
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++ D G + +L++L L + S I E + + L L + V + +S
Sbjct: 177 NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAKSIS 236
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ L+S+N+S TGIS L+ L+ L+ L +L+L IT+ GL +++ + +T L L
Sbjct: 237 SIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQH 296
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I GA L NLR L I +T G+KHI L ++T LN+S N L D+ L+L+
Sbjct: 297 NVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISIN-QLNDEALKLV 355
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---ANDIKRLQSRDLPNLV 474
S + L +L+ N+++TS G +H+ L NL L + S V AN + ++ + + N+
Sbjct: 356 SSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVS 415
Query: 475 SFR 477
+ R
Sbjct: 416 NCR 418
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 195/425 (45%), Gaps = 49/425 (11%)
Query: 1 MLPRDISQQIFNELVYSRCLTE---VSLEAF-----RDCALQDLCLGQYPGVNDKWMDVI 52
+ P DI ++I L + L +S + F R A L GQ W+ I
Sbjct: 24 LFPDDICEEIMQWLAWKEVLLNCCLISKQWFTIAKSRYRASIQLTYGQ----EKLWLCFI 79
Query: 53 ASQGSSL-----LSVD---LSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
Q + + VD + GS DS I K NL+ L+ Q D G E +
Sbjct: 80 KEQQEGISRIFNIGVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESI 139
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LTSL+ + IT++G + F GL+N GL L N
Sbjct: 140 SKIKTLTSLNVL-DCGITSKGAE-FIGLLN--------------------GLTYLNIGN- 176
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I DS MK + L++L LQI +++T + ++ LT L++ PVT
Sbjct: 177 ---NKIMDSGMKFIGKLSSLNVLQIGSTEITSESFKLVGCMKGLTSLSIYSNPVTIEDAK 233
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
S+S++ L LN++ +S +G + S LT L +L+L I +EGL++++ + + L
Sbjct: 234 SISSIHGLKSLNISNTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLF 293
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + G + LS +TNL +N+S T I+ ++ + L ++ SLN+ Q+ D L
Sbjct: 294 LQHNVIDCDGAQLLSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALK 353
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++S+ LT+L ++T GA ++ NL L I + G ++ +++L ++N
Sbjct: 354 LVSSMNQLTNLSTHNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIIN 413
Query: 403 LSQNC 407
+S NC
Sbjct: 414 VS-NC 417
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 1/174 (0%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I+ +G+K + L L L L + + GL+++ + ++ L ++ N I +
Sbjct: 248 NTGISVEGLKYLSALTLLTNLSLAKNNITNEGLLSISQMKQITKLFLQ-HNVIDCDGAQL 306
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
LS +TNL+ L IS +K+T GI ++ L+ +T LN+ + L +S++ L L+
Sbjct: 307 LSTMTNLRLLNISQTKITTEGIKHITSLKNITSLNISINQLNDEALKLVSSMNQLTNLST 366
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
+ +L+ +G + S+L NL LN+ S + EG L + LK + +S+ + G
Sbjct: 367 HNNKLTSEGAKHISQLNNLTELNISSNPVRIEGANYLNQMTTLKIINVSNCRTG 420
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 349 GLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQ 405
G+ + G+ DS A + ++F NL+ LEI D G + I + +LT LN+
Sbjct: 93 GVDSFRVVGSYFIDSINAEIISKSFPNLKRLEIGDNQQFGDCGAESISKIKTLTSLNV-L 151
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+C +T K E I L GL LN+ N++I +G++ + L +L L + S ++T+ K
Sbjct: 152 DCGITSKGAEFIGLLNGLTYLNIGNNKIMDSGMKFIGKLSSLNVLQIGSTEITSESFK 209
>gi|156406568|ref|XP_001641117.1| predicted protein [Nematostella vectensis]
gi|156228254|gb|EDO49054.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 187/400 (46%), Gaps = 57/400 (14%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL- 130
+G HL+ L L N C +I +S L + A+T + + AF
Sbjct: 416 AGQRHLQPLVTLGVLPHNVCDKI----------ISRLVE-----DKALTPKVLHAFISCC 460
Query: 131 INLVKLDLERCTRIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+ +KLD C + L L+ +L L+IK C ITD ++ + L L +LQ+
Sbjct: 461 LRYIKLD---CYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLD 517
Query: 189 CSKVTDSGIAYLKG----LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+K++D G+ Y G +Q L L+L G VT SL+ L L L +++
Sbjct: 518 NTKISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKIT--S 575
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ L +L++LN+ G+ DE LV L +L L + T V GL+HL GL L S
Sbjct: 576 LDVIRHLQHLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSS 634
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
++LS + I+D ++ +AG++SL L L ++TD G+ L+ L L L++ +TD
Sbjct: 635 LDLSDYRNITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDK 694
Query: 364 GAAYLRNFKNLRSLEICGGGLTDA--------------------------GVKHIKDLSS 397
G+ L NF NL+ L + G+TD G+KH+ +L+S
Sbjct: 695 GSRVLSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL-ELNS 753
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
LTLLNL D L L++G L +L +SN S G
Sbjct: 754 LTLLNLDWTRVTADCGL-LLTGCPALKALRMSNCTPPSPG 792
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 151/284 (53%), Gaps = 35/284 (12%)
Query: 182 LKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRCQ 239
L+ +++ C VT+ +A L+ ++L L+++ CP+ T L+++ L +L L L+ +
Sbjct: 461 LRYIKLDCYLLVTNDLLAELRFHRQLVHLSIKSCPIITDKALEAVVDLPALTTLQLDNTK 520
Query: 240 LSDDGCEKFSRLTN----LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLR 294
+SD G FS N L L+L+ G+ ++G +L L+ L L +T++ S +R
Sbjct: 521 ISDKGLMYFSGHANCIQTLVHLSLNGTGVTNQGTASLADWKILRILGLENTKITSLDVIR 580
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
HL +L+++N++FTG++D L L SL SLN+ +TD GL L L L+ LD
Sbjct: 581 HLQ---HLKTLNVAFTGVTDECLVALNSHPSLSSLNILQTSVTDRGLQHLKGLP-LSSLD 636
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L +++N+ TD+GV++I ++SLT L LS N LTD+ +
Sbjct: 637 L-------------SDYRNI----------TDSGVQYIAGMTSLTRLLLS-NTRLTDEGM 672
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+SGL LV LNV + +T G R L NL+ L L S VT
Sbjct: 673 VQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQILGLSSTGVT 716
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 172/368 (46%), Gaps = 38/368 (10%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGV-NDKWMDVIASQGSSL 59
+LP ++ +I + LV + LT L AF C L+ + L Y V ND ++ +
Sbjct: 429 VLPHNVCDKIISRLVEDKALTPKVLHAFISCCLRYIKLDCYLLVTNDLLAELRFHRQLVH 488
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN----LTSLSFRR 115
LS+ S +TD L + D L +L + +ISD GL + G +N L LS
Sbjct: 489 LSIK-SCPIITDKALEAVVDLPALTTLQLDNT-KISDKGLMYFSGHANCIQTLVHLSLN- 545
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T QG + A L L LE T+I L ++ L L++LN+ + +TD +
Sbjct: 546 GTGVTNQGTASLADWKILRILGLEN-TKI-TSLDVIRHLQHLKTLNVAFTG-VTDECLVA 602
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ +L SL I + VTD G+ +LKGL LS+L Y N
Sbjct: 603 LNSHPSLSSLNILQTSVTDRGLQHLKGL-------------------PLSSLDLSDYRN- 642
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++D G + + +T+L L L + + DEG+V L+GL L L + T V G R
Sbjct: 643 ----ITDSGVQYIAGMTSLTRLLLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRV 698
Query: 296 LSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
LS NL+ + LS TG++D LR L L LNL +T+ G+ L L LT L
Sbjct: 699 LSNFANLQILGLSSTGVTDKLLRDGVLNRCKKLCKLNLSRTSVTNRGIKHL-ELNSLTLL 757
Query: 354 DLFGARIT 361
+L R+T
Sbjct: 758 NLDWTRVT 765
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
+ GV D+ + + S SL S+++ + VTD GL HLK L SLD + I+D G++
Sbjct: 592 FTGVTDECLVALNSH-PSLSSLNILQTSVTDRGLQHLKGLP-LSSLDLSDYRNITDSGVQ 649
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
++ G+++LT L N +T +GM +GL LV+L+++R G L L+ L
Sbjct: 650 YIAGMTSLTRL-LLSNTRLTDEGMVQLSGLAKLVELNVDRTVVTDKGSRVLSNFANLQIL 708
Query: 161 NIKWCNCITDSDMKPLSGLTN----LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ +TD ++ G+ N L L +S + VT+ GI +L+ L LTLLNL+ V
Sbjct: 709 GLS-STGVTDKLLR--DGVLNRCKKLCKLNLSRTSVTNRGIKHLE-LNSLTLLNLDWTRV 764
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
TA C L+ +L L ++ C G E
Sbjct: 765 TADCGLLLTGCPALKALRMSNCTPPSPGDE 794
>gi|290974856|ref|XP_002670160.1| predicted protein [Naegleria gruberi]
gi|284083716|gb|EFC37416.1| predicted protein [Naegleria gruberi]
Length = 376
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 164/342 (47%), Gaps = 6/342 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L N+ L LER R + GLMK L L+ + NCI +K + + NL L I
Sbjct: 35 LENIENLRLERNNRFFD--CQIIGLMKGLTVLSAE--NCIGTEGVKHICKMNNLTKLNIE 90
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ + G Y+ +++LT LN+ + ++ +S L +L L + C++ D+G +
Sbjct: 91 RNEIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISELKNLTLLEIEACRICDEGAKSI 150
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S L L LN+ I + G LT L L L L D + G +++S L L +++S
Sbjct: 151 SELKQLTHLNISYNNISNLGSKYLTELKQLTVLTLCDCNISEEGCKYISELNQLTDLDIS 210
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I + ++G+ L L + + T L ++ + +T+L++ + D GA Y+
Sbjct: 211 NNDIGCNGVEYISGMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYI 270
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ K L LE+ ++ G KHI +L LT LN+ +N N+ + IS + L L++
Sbjct: 271 SDMKQLTKLEVVRSDISTEGAKHISELKQLTDLNIGEN-NIGGEGAIAISKMNQLRILDI 329
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
S++ I G H+ +K L L + + KR+ + L
Sbjct: 330 SDNNIGGIGAEHVSQMKQLTHLDISHNCIGNYGAKRINTMKL 371
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 26/314 (8%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G++H+ ++NLT L+ RN I +G K + + L +L++ G+ +
Sbjct: 70 IGTEGVKHICKMNNLTKLNIERN-EIGEEGAKYISKMKQLTELNVGWNGIGKEGVEFISE 128
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L L I+ C I D K +S L L L IS + +++ G YL L++LT+L L
Sbjct: 129 LKNLTLLEIEACR-ICDEGAKSISELKQLTHLNISYNNISNLGSKYLTELKQLTVLTL-- 185
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
C C +S++GC+ S L L L++ + IG G+ ++
Sbjct: 186 CD----------------------CNISEEGCKYISELNQLTDLDISNNDIGCNGVEYIS 223
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
G+ L L + T + + L+ +S + + ++N+S+ + D + ++ + L L +
Sbjct: 224 GMKQLLFLYIYGTNMYPTELQKISEMKQVTNLNISWNYVGDEGAKYISDMKQLTKLEVVR 283
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I+ G ++ L LT L++ I GA + LR L+I + G +H+
Sbjct: 284 SDISTEGAKHISELKQLTDLNIGENNIGGEGAIAISKMNQLRILDISDNNIGGIGAEHVS 343
Query: 394 DLSSLTLLNLSQNC 407
+ LT L++S NC
Sbjct: 344 QMKQLTHLDISHNC 357
>gi|329906145|ref|ZP_08274368.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547327|gb|EGF32161.1| hypothetical protein IMCC9480_2835 [Oxalobacteraceae bacterium
IMCC9480]
Length = 518
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 212/460 (46%), Gaps = 84/460 (18%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG------------LE---- 100
S+ ++LSG + +TD+GL HL +L+ +D CIQ++D G LE
Sbjct: 43 SVRRLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQ 102
Query: 101 ------HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKG 153
L + L L+ +R IT ++A A NL L++ R L +L+
Sbjct: 103 RDASGAALAQMPQLRHLTLQRCQGITPAALEAVANQANLQHLEISLRRNMTDDELASLRP 162
Query: 154 LMKLESLNIK------------W-------------CNCITDSDMKPLSGLTNLKSLQI- 187
L++L L++ W C I ++++ L+ L +L+ L +
Sbjct: 163 LLQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLS 222
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC ++TD+G+A+L L L+L GC VT A L LSAL SL +L+++ C+L
Sbjct: 223 SCQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGA-- 280
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH-LSGLTNLE 303
++SLN C D GL + G+ +L+ LE++ + L L LT L+
Sbjct: 281 TLGDFAVMKSLNAGFCRRFSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQ 340
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR--I 360
++N S T +SD L+ L SL+ L L R +T+ GLA L + L LDL R +
Sbjct: 341 TLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVV 400
Query: 361 TDSGAAY---------------------LRNFKN---LRSLEICG-GGLTDAGVKHIKDL 395
D+ A LR+F++ L++L + G G + DAG+ H++ L
Sbjct: 401 GDALPALGRQTALETLDLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQAL 460
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+L L+L+ LTD L I+ L L++ N + S
Sbjct: 461 PALKTLDLTDCGYLTDGALRRIAHFPALEKLHIRNCHLIS 500
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 158/310 (50%), Gaps = 10/310 (3%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
Q +L +DL+ + + ++ L+HL +LQ L+ + C Q++D G+ HL S L L
Sbjct: 186 PQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSSCQQLTDAGVAHLPLASTLQHLD 245
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+T G++ + L +L LD+ C + G + +MK SLN +C +D+
Sbjct: 246 LSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVTGATLGDFAVMK--SLNAGFCRRFSDAG 303
Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++G+ +L+ L+I+ C +T +A L L +L LN G P++ A L +L A GSL
Sbjct: 304 LAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQTLNASGTPLSDAPLQALFAQGSL 363
Query: 231 FYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQ 287
L L C+ L++ G + + L SL+L SC G+ + L L L+ L+LS +
Sbjct: 364 QQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQTALETLDLSRCSG 423
Query: 288 VGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 345
V LRH L+ L+++ L G I+D L L L +LK+L+L D +TD L +
Sbjct: 424 VTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTDGALRRIA 483
Query: 346 SLTGLTHLDL 355
L L +
Sbjct: 484 HFPALEKLHI 493
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 183/353 (51%), Gaps = 18/353 (5%)
Query: 135 KLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-V 192
+L+L TR+ GL +L GL+ LE ++++ C +TD+ + L+ L L +L+++ +
Sbjct: 46 RLELSGNTRLTDAGLAHLAGLLSLEHVDLRSCIQVTDAGLATLAALPALHTLELAEQRDA 105
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRL 251
+ + +A + L+ LTL +G +T A L++++ +L +L ++ R ++DD L
Sbjct: 106 SGAALAQMPQLRHLTLQRCQG--ITPAALEAVANQANLQHLEISLRRNMTDDELASLRPL 163
Query: 252 TNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 309
L L+L+ L + + L+ L+L+ T + + L HL+ L +L+ +NLS
Sbjct: 164 LQLRHLSLNGSSGFSGSGLEDWPQMPALQVLDLTACTTIAEANLVHLAKLPDLQQLNLSS 223
Query: 310 -TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
++D + L S+L+ L+L +Q+TD GL L++L L HLD+ R+ A
Sbjct: 224 CQQLTDAGVAHLPLASTLQHLDLSGCQQVTDAGLRGLSALRSLQHLDVHSCRLVT--GAT 281
Query: 368 LRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLV 424
L +F ++SL C +DAG+ + + L L ++ LT L + LT L
Sbjct: 282 LGDFAVMKSLNAGFCRR-FSDAGLAAVAGMHDLQQLEITHCVALTRDALATCLPQLTQLQ 340
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRDLPNLVSF 476
+LN S + ++ A L+ L +L+ L L+ C+ +T + +L + P LVS
Sbjct: 341 TLNASGTPLSDAPLQALFAQGSLQQLVLQHCRALTEPGLAQLATS--PALVSL 391
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 6 ISQQIFNELVYSRC--LTEVSLEAFR-DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
+Q +LV C LTE L AL L L GV + + Q ++L ++
Sbjct: 358 FAQGSLQQLVLQHCRALTEPGLAQLATSPALVSLDLRSCRGVVGDALPALGRQ-TALETL 416
Query: 63 DLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
DLS S VT L H + S LQ+L C +I+D GL HL+ L L +L +T
Sbjct: 417 DLSRCSGVTGDDLRHFQSLSKLQTLRLVGCGRINDAGLAHLQALPALKTLDLTDCGYLTD 476
Query: 122 QGMKAFAGLINLVKLDLERCTRI 144
++ A L KL + C I
Sbjct: 477 GALRRIAHFPALEKLHIRNCHLI 499
>gi|46447589|ref|YP_008954.1| hypothetical protein pc1955 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401230|emb|CAF24679.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 454
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 163/329 (49%), Gaps = 38/329 (11%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
LV LKGL+ + C +D+K LT + +L S++T+ L ++
Sbjct: 145 SLVGLKGLLNFA----QQCQL---NDLKNYLELTVVSALLNQASQLTEFQRIINHFLDEI 197
Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGI 264
LN G + A L +L +L L+L CQ ++DDG + LT+L+ LNL C
Sbjct: 198 EALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFC-- 255
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGL 323
VNLT +GL HL+ LT L+ +NLS+ I+D L L L
Sbjct: 256 -----VNLT----------------DAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPL 294
Query: 324 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG 381
+ L+ LNL D +TD GLA LT LT L +L+L +T+ G A+L L+ L +
Sbjct: 295 TDLQHLNLSDCENLTDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKW 354
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLR 439
LTDAG H+ L++L L+LS NLTD L ++ LT L L +S R +T GL
Sbjct: 355 CWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLA 414
Query: 440 HLKPLKNLRSLTLESC-KVTANDIKRLQS 467
HL PL L+ L L C KVT + R ++
Sbjct: 415 HLTPLTALQHLDLRECDKVTDAGLARFKT 443
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 6/196 (3%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL + LQ L+ ++C +I+D GL HL L++L L+ +T G+
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L+ L+L +C + + GL +L L L+ LN+KWC +TD+ L+ LT L+ L
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+S C +TD+G+AYL L L L L C +T L L+ L +L +L+L C +++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 244 GCEKFSRLTNLESLNL 259
G +F L SLNL
Sbjct: 437 GLARFKTLAT--SLNL 450
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 135/247 (54%), Gaps = 8/247 (3%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ + D+ + LK + L LL+LE C +T L L+ L SL +LNL C L+D G
Sbjct: 206 AHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAH 265
Query: 248 FSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESI 305
+ LT L+ LNL C I D GL +LT L +L+ L LSD + + +GL HL+ LT L +
Sbjct: 266 LTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHLTPLTALLYL 325
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
NLS +++ L LA L+ L+ LNL +TD G + L SLT L HLDL +TD
Sbjct: 326 NLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLDLSDCENLTD 385
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+G AYL + L+ L + LTD G+ H+ L++L L+L + +TD L L
Sbjct: 386 AGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDAGLARFKTLA 445
Query: 422 GLVSLNV 428
++L +
Sbjct: 446 TSLNLKI 452
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 135/256 (52%), Gaps = 9/256 (3%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
+++L+F+ ++D L L+ NL L AIT G+ A L +L L+L C
Sbjct: 197 IEALNFSGNAHLADAHLLALKNCENLKLLHLEACQAITDDGLAHLALLTSLQHLNLYFCV 256
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
+ GL +L L L+ LN+ +C ITD+ + L+ LT+L+ L +S C +TD+G+A+L
Sbjct: 257 NLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLTPLTDLQHLNLSDCENLTDAGLAHL 316
Query: 201 KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLN 258
L L LNL C +T L L+ L L YLNL C L+D G + LT L+ L+
Sbjct: 317 TPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNLKWCWNLTDAGFSHLASLTALQHLD 376
Query: 259 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINL-SFTGISDG 315
L C + D GL L L L+ L LS + + GL HL+ LT L+ ++L ++D
Sbjct: 377 LSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVGLAHLTPLTALQHLDLRECDKVTDA 436
Query: 316 SLRKLAGLSSLKSLNL 331
L + L++ SLNL
Sbjct: 437 GLARFKTLAT--SLNL 450
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 8/222 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL HL ++LQ L+ FC+ ++D GL HL L+ L L+ IT G+
Sbjct: 233 ITDDGLAHLALLTSLQHLNLYFCVNLTDAGLAHLTPLTALQHLNLSYCWKITDAGLAHLT 292
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +L L+L C + GL +L L L LN+ C +T+ + L+ LT L+ L +
Sbjct: 293 PLTDLQHLNLSDCENLTDAGLAHLTPLTALLYLNLSKCYHLTNVGLAHLAPLTGLQYLNL 352
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
C +TD+G ++L L L L+L C +T A L L++L +L YL L++C+ L+D G
Sbjct: 353 KWCWNLTDAGFSHLASLTALQHLDLSDCENLTDAGLAYLASLTALQYLGLSQCRNLTDVG 412
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC---NLKCLE 282
+ LT L+ L+L C + D GL L NLK ++
Sbjct: 413 LAHLTPLTALQHLDLRECDKVTDAGLARFKTLATSLNLKIIK 454
>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]
Length = 600
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 233/470 (49%), Gaps = 46/470 (9%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L +N +WM I +L+S++LS + S L + ++L
Sbjct: 56 LEGFKH-SVENIDLRGESSINAEWMAYIGG-FVNLISLNLSDCQRINSSTLWPITGLTSL 113
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
LD + C +++D G++HL+ +SNL L + +T G+ A L L LDL
Sbjct: 114 TELDLSRCWKVTDAGIKHLQSVSNLKKL-WISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKG 202
L+ L+ L KLE L+I W + +T+ + +NL L +S + VT + I +L+
Sbjct: 173 TDHNLIALQALTKLEYLDI-WGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLEC 231
Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-------------------GSLFYLNLNRCQLSDD 243
L + + + P T + L SL L S+ YL++++ L +
Sbjct: 232 LH-MNMCTIVSEPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNF 290
Query: 244 GCEKFSRLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LT 300
+ NLE L+L S GD+ G V G NL+ L +S+T++ S+G+ +L+G +
Sbjct: 291 SF--LETMINLEHLDLSSTAFGDDSVGFVACVG-ENLRNLNVSETKITSAGVGNLAGHVP 347
Query: 301 NLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
LE+ +LS T + D S+ ++ + +K+L+L +TS+ G
Sbjct: 348 QLETFSLSQTFVDDLSILLISTMMPCVKALDL-----------GMTSIRGFILQQSPQEE 396
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+ A L++ +L++L + L D + + L+ LT L+L ++ +LTD TL +S
Sbjct: 397 QAEPSLAALQSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSL-RSTSLTDSTLHHLSS 455
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSR 468
L LVSL V ++ +TS GL +P K LR+L L+ C +T +DI L R
Sbjct: 456 LPNLVSLGVRDAVLTSNGLEKFRPPKRLRTLDLKGCWLLTKDDIAGLCKR 505
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 113/419 (26%), Positives = 184/419 (43%), Gaps = 54/419 (12%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMK 156
G +H ++ ++ R ++I A+ M G +NL+ L+L C RI+ L + GL
Sbjct: 58 GFKH-----SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTS 112
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ C +TD+ +K L ++NLK L IS + VT GI+ L L+KL+LL+L G PV
Sbjct: 113 LTELDLSRCWKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPV 172
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
T L +L AL L YL++ +++ G + +NL LNL + +
Sbjct: 173 TDHNLIALQALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSV-----TQTPNIP 227
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L+CL ++ + S H S L +L+ + LS S L+ + LD +
Sbjct: 228 HLECLHMNMCTIVSEPKTH-SSLASLKKLVLSGANFS-AETEALSFTNKSSITYLDVSKT 285
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGV----KH 391
+ + L ++ L HLDL D ++ +NLR+L + +T AGV H
Sbjct: 286 SLQNFSFLETMINLEHLDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGH 345
Query: 392 IKDLSSLTL----------------------------------LNLSQNCNLTDKTLELI 417
+ L + +L L S + +L +
Sbjct: 346 VPQLETFSLSQTFVDDLSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAAL 405
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
LT L +L++ + + L L L L L+L S +T + + L S LPNLVS
Sbjct: 406 QSLTSLKTLSLEHPYLGDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSS--LPNLVSL 462
>gi|290980851|ref|XP_002673145.1| predicted protein [Naegleria gruberi]
gi|284086726|gb|EFC40401.1| predicted protein [Naegleria gruberi]
Length = 468
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 4/338 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G H+ + L +L N I G + LR L NLT L+ N+ I +G K + L
Sbjct: 127 EGAKHVSEMKQLTNLYVN-ANNIGTEGAKFLRELKNLTYLNISEND-IGVEGAKYISELK 184
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G + L +L +L+I+ N T+ K +S L L+ L IS S
Sbjct: 185 QLTDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEG-AKYISELNQLQVLNISYSS 243
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+ D G Y+ +++LT L + + + +S + L L + + D+G + S +
Sbjct: 244 LGDKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTM 303
Query: 252 TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L L + I DEG L+ L NL L + D ++G+ G +HLS L NL SI +S+T
Sbjct: 304 KELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYT 363
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I D + L+ L+ L L + I G +++L LT L + I + GA Y+
Sbjct: 364 EIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISE 423
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
K L L+I + G ++ + LT L + N +
Sbjct: 424 LKQLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSD 461
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 12/332 (3%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLT 109
S+ L ++ ++ +++ G L++ NL L+ I +D G+E ++ L LT
Sbjct: 132 VSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLN----ISENDIGVEGAKYISELKQLT 187
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
L NN I +G K + L L LD+E G + L +L+ LNI + +
Sbjct: 188 DLDISYNN-IGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLG 245
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D + +S + L L IS S + G Y+ +++LT L +E + +S +
Sbjct: 246 DKGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKE 305
Query: 230 L--FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L Y+ NR +SD+G + S L NL L + IG+EG +L+ L NL + +S T+
Sbjct: 306 LTKLYMQGNRL-ISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTE 364
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+G G ++LS L L + + + GI + ++ L L L + I + G ++ L
Sbjct: 365 IGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYISEL 424
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LT LD+ I GA YL K L LEI
Sbjct: 425 KQLTDLDISYNNIGTEGADYLSQMKQLTHLEI 456
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 13/299 (4%)
Query: 170 DSDMKPLSG--LTNLKSLQISCSKVTDSG----IAYLKGLQKLTLL-NLEGCP----VTA 218
++ MKP G L N+ +L+ + TD+ A +K + L + N+EG +
Sbjct: 69 ENTMKPPQGQFLANISTLEFE--RRTDAFDFKVFALMKHVTSLEIDDNIEGTTNENGIGV 126
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+S + L L +N + +G + L NL LN+ IG EG ++ L L
Sbjct: 127 EGAKHVSEMKQLTNLYVNANNIGTEGAKFLRELKNLTYLNISENDIGVEGAKYISELKQL 186
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L++S +G+ G +++S L L ++++ I + ++ L+ L+ LN+ + D
Sbjct: 187 TDLDISYNNIGTEGAKYISDLKQLTTLDIESNNIGTEGAKYISELNQLQVLNISYSSLGD 246
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G ++ + LTHL + + I GA Y+ K L +L I + D G KHI + L
Sbjct: 247 KGAQYISEMKQLTHLYISDSLIRSEGAKYISEMKQLTNLFIENNDIDDEGAKHISTMKEL 306
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
T L + N ++D+ + +S L L L + ++RI + G +HL LKNL S+ + ++
Sbjct: 307 TKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSYTEI 365
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 126/283 (44%), Gaps = 28/283 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++D+ +++ G ++ + + LQ L+ ++ + D G +++ + LT L + ++
Sbjct: 210 LTTLDIESNNIGTEGAKYISELNQLQVLNISYS-SLGDKGAQYISEMKQLTHL-YISDSL 267
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I ++G K + + L L +E N I D K +S
Sbjct: 268 IRSEGAKYISEMKQLTNLFIEN-------------------------NDIDDEGAKHIST 302
Query: 179 LTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L L + ++ ++D G YL L+ LT+L + + LS L +L + ++
Sbjct: 303 MKELTKLYMQGNRLISDEGAKYLSELKNLTVLFIGDNRIGNEGAKHLSELKNLTSIYVSY 362
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++ D+G + S L L L + GIG EG +++ L L L++ +G+ G +++S
Sbjct: 363 TEIGDEGAKYLSELNKLTILQIGYNGIGAEGAKHISNLKELTMLKIQYNNIGNEGAKYIS 422
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +++S+ I L+ + L L ++ + G
Sbjct: 423 ELKQLTDLDISYNNIGTEGADYLSQMKQLTHLEIETNSDAEEG 465
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 20/254 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I ++G+ +S +++S S + D G ++ + L L + + I G +++
Sbjct: 220 IGTEGAKYISELNQLQVLNISYSSLGDKGAQYISEMKQLTHLYISDSL-IRSEGAKYISE 278
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNI 162
+ LT+L F NN I +G K + + L KL ++ R G K L +L++L +
Sbjct: 279 MKQLTNL-FIENNDIDDEGAKHISTMKELTKLYMQGNRLISDEGA----KYLSELKNLTV 333
Query: 163 KWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N I + K LS L NL S+ +S +++ D G YL L KLT+L + + A
Sbjct: 334 LFIGDNRIGNEGAKHLSELKNLTSIYVSYTEIGDEGAKYLSELNKLTILQIGYNGIGAEG 393
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
+S L L L + + ++G + S L L L++ IG EG L+ + L
Sbjct: 394 AKHISNLKELTMLKIQYNNIGNEGAKYISELKQLTDLDISYNNIGTEGADYLSQMKQLTH 453
Query: 281 LEL---SDTQVGSS 291
LE+ SD + G +
Sbjct: 454 LEIETNSDAEEGEN 467
>gi|406830019|ref|ZP_11089613.1| hypothetical protein SpalD1_00225 [Schlesneria paludicola DSM
18645]
Length = 509
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 170/354 (48%), Gaps = 25/354 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L+G+D+TD+ L+D +L LD +ISD +E L L NL L +
Sbjct: 119 ALGTLNLNGTDITDADFSELRDLRHLSLLDLG-GTRISDASIEGLSQLKNLKEL-WIDGT 176
Query: 118 AITAQGMKAF-AGLIN-LVKLD-------LERCTRIHGGLVNLKGLMKLESLNIKW---- 164
IT G+++ L N +V D +E + GG+ + + + + +
Sbjct: 177 EITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFL 236
Query: 165 ---CNCITDSDMKPLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGC 214
+ + + +L++LQ+ S T G + L LT L + G
Sbjct: 237 DVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTIIGI 296
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+T A L +S L L L L ++++ G ++ +L NL +L L + D GL L G
Sbjct: 297 EITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRG 356
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L L L++ + GLR + LT+L +++ T I+D L+ L GLSSLK+L L +
Sbjct: 357 LQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLRGLSSLKNLCLAST 416
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+I+D GL L L L LDL G R+T +G LR ++L SL + ++D G
Sbjct: 417 RISDDGLKGLIGLNNLEQLDLAGTRVTGTGVGPLRELESLHSLGLSNTQISDEG 470
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 160/327 (48%), Gaps = 39/327 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D+ ++ LS L NLK L I +++TD+G+ LK ++ + P + ++++ +L
Sbjct: 154 ISDASIEGLSQLKNLKELWIDGTEITDAGVQSLKEALPNAIVG-KDAPDESQAIETIRSL 212
Query: 228 GSLF------------------YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
G +L++ ++ + +L +L L S G GL
Sbjct: 213 GGGVTRDEAVAGRPVIEVGFGGFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGL 272
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ + G + +S L NL + + I+D L++++ LS L+SL
Sbjct: 273 L-----------------ATADGWKEISELNNLTRLTIIGIEITDAGLKEISRLSQLESL 315
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L +IT+ G+ + L LT+L LF ++TD+G LR + L +L + ++D G+
Sbjct: 316 RLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQRLDTLSLNNNPISDEGL 375
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+ + L+SLT L++ + +TD L+ + GL+ L +L ++++RI+ GL+ L L NL
Sbjct: 376 RQVGALTSLTFLSVP-STEITDNGLKGLRGLSSLKNLCLASTRISDDGLKGLIGLNNLEQ 434
Query: 450 LTLESCKVTANDIKRLQSRDLPNLVSF 476
L L +VT + L R+L +L S
Sbjct: 435 LDLAGTRVTGTGVGPL--RELESLHSL 459
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 134/291 (46%), Gaps = 25/291 (8%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
LK L LNL G +T A L L L L+L ++SD E S+L NL+ L +
Sbjct: 114 LKSFNALGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWI 173
Query: 260 DSCGIGDEGLVNLT-GLCN-LKCLELSDTQVGSSGLRHL-SGLTNLES------INLSFT 310
D I D G+ +L L N + + D +R L G+T E+ I + F
Sbjct: 174 DGTEITDAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFG 233
Query: 311 GISD--------GSLRKLAGLSSLKSLNL----DARQ---ITDTGLAALTSLTGLTHLDL 355
G D L + SL++L L DA T G ++ L LT L +
Sbjct: 234 GFLDVGPKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTI 293
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G ITD+G + L SL + +T+ G+K I L +LT L L + LTD L
Sbjct: 294 IGIEITDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLF-DVQLTDAGLN 352
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ GL L +L+++N+ I+ GLR + L +L L++ S ++T N +K L+
Sbjct: 353 QLRGLQRLDTLSLNNNPISDEGLRQVGALTSLTFLSVPSTEITDNGLKGLR 403
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 52/243 (21%)
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L L+ T + + L L +L ++L T ISD S+ L+ L +LK L +D +IT
Sbjct: 120 LGTLNLNGTDITDADFSELRDLRHLSLLDLGGTRISDASIEGLSQLKNLKELWIDGTEIT 179
Query: 338 DTGLAALTSL------------------------TGLTHLDLFGAR---------ITDSG 364
D G+ +L G+T + R D G
Sbjct: 180 DAGVQSLKEALPNAIVGKDAPDESQAIETIRSLGGGVTRDEAVAGRPVIEVGFGGFLDVG 239
Query: 365 A--------AYLRNFKNLRSLEICGGG-------LTDAGVKHIKDLSSLTLLNLSQNCNL 409
+ ++ F++LR+L++ G T G K I +L++LT L + +
Sbjct: 240 PKTTIEEVLSAVKQFRSLRTLQLGSSGDASHGLLATADGWKEISELNNLTRLTII-GIEI 298
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---NDIKRLQ 466
TD L+ IS L+ L SL + N +IT+ G++ + LKNL +L L ++T N ++ LQ
Sbjct: 299 TDAGLKEISRLSQLESLRLINLKITNQGMKEIGKLKNLTNLGLFDVQLTDAGLNQLRGLQ 358
Query: 467 SRD 469
D
Sbjct: 359 RLD 361
>gi|290972120|ref|XP_002668808.1| predicted protein [Naegleria gruberi]
gi|284082332|gb|EFC36064.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 15/330 (4%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SLD + +I G +++ + LTSL +N I +G K + + +L LD
Sbjct: 4 LTSLDMH-SNEIGVEGSKYISEMKQLTSLDIY-SNEIGVEGAKYISEMKSLTSLD----- 56
Query: 143 RIHGGLVNLKG------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
IH + ++G + +L SLNI + N I K +S + L SL I +++ G
Sbjct: 57 -IHSNEIGVEGSKYISEMKQLTSLNIGY-NQIGVEGSKYISEMNQLTSLDIHSNEIGVEG 114
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
Y+ +++LT LN+ ++ +S + SL L + Q+ +G + S + L S
Sbjct: 115 SKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTS 174
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
LN+ IG+EG ++G+ +L L + Q+G G +++S + L S+N+ IS
Sbjct: 175 LNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEG 234
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++G+ SL SLN+ QI G ++ + LT L++ I GA Y+ K+L S
Sbjct: 235 SKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTS 294
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L I + G K+I ++ LT LN+ N
Sbjct: 295 LNIGYNQIGVEGSKYISEMKQLTSLNIGHN 324
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 153/299 (51%), Gaps = 2/299 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I K +S + +L SL I +++ G Y+ +++LT LN+
Sbjct: 25 MKQLTSLDI-YSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGY 83
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ +S + L L+++ ++ +G + S + L SLN+ I EG ++
Sbjct: 84 NQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYIS 143
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
G+ +L L + Q+G G +++S + L S+N+ I + + ++G+ SL SLN+
Sbjct: 144 GMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGY 203
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G ++ + LT L++ I+ G+ Y+ K+L SL I + G K+I
Sbjct: 204 NQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYIS 263
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ LT LN+ N + + + ISG+ L SLN+ ++I G +++ +K L SL +
Sbjct: 264 EMKQLTSLNIGYN-EIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 321
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 141/274 (51%), Gaps = 1/274 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL + +++ G Y+ +++LT L++ + +S + SL L+++
Sbjct: 1 MNQLTSLDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ +G + S + L SLN+ IG EG ++ + L L++ ++G G +++S
Sbjct: 61 EIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+ + IS + ++G+ SL SL + QI G ++ + LT L++
Sbjct: 121 MKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I + GA Y+ K+L SL I + G K+I ++ LT LN+ N ++ + + IS
Sbjct: 181 EIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHN-EISVEGSKYIS 239
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
G+ L SLN+ ++I G +++ +K L SL +
Sbjct: 240 GMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNI 273
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 151/303 (49%), Gaps = 15/303 (4%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ G ++ + +L SLD + +I G +++ + LTSL+ N
Sbjct: 28 LTSLDIYSNEIGVEGAKYISEMKSLTSLDIH-SNEIGVEGSKYISEMKQLTSLNIGY-NQ 85
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLESLNIKWCNCITDSD 172
I +G K + + L LD IH + ++G + +L SLNI + N I+
Sbjct: 86 IGVEGSKYISEMNQLTSLD------IHSNEIGVEGSKYISEMKQLTSLNIGY-NQISVEG 138
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +SG+ +L SL I +++ G Y+ +++LT LN+ + +S + SL
Sbjct: 139 AKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTS 198
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
LN+ Q+ +G + S + L SLN+ I EG ++G+ +L L + Q+G G
Sbjct: 199 LNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEG 258
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++S + L S+N+ + I + ++G+ SL SLN+ QI G ++ + LT
Sbjct: 259 SKYISEMKQLTSLNIGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTS 318
Query: 353 LDL 355
L++
Sbjct: 319 LNI 321
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 124/233 (53%), Gaps = 1/233 (0%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+++ ++ +G + S + L SL++ S IG EG ++ + +L L++ ++G G
Sbjct: 7 LDMHSNEIGVEGSKYISEMKQLTSLDIYSNEIGVEGAKYISEMKSLTSLDIHSNEIGVEG 66
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++S + L S+N+ + I + ++ ++ L SL++ + +I G ++ + LT
Sbjct: 67 SKYISEMKQLTSLNIGYNQIGVEGSKYISEMNQLTSLDIHSNEIGVEGSKYISEMKQLTS 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ +I+ GA Y+ K+L SL I + G K+I ++ LT LN+ N + ++
Sbjct: 127 LNIGYNQISVEGAKYISGMKSLTSLYIGYNQIGVEGSKYISEMKQLTSLNIGHN-EIGEE 185
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ ISG+ L SLN+ ++I G +++ +K L SL + +++ K +
Sbjct: 186 GAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEISVEGSKYI 238
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 140/285 (49%), Gaps = 3/285 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S+D+ +++ G ++ + L SL+ + QI G +++ ++ LTSL
Sbjct: 47 SEMKSLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QIGVEGSKYISEMNQLTSLDI 105
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L L++ G + G+ L SL I + N I
Sbjct: 106 H-SNEIGVEGSKYISEMKQLTSLNIGYNQISVEGAKYISGMKSLTSLYIGY-NQIGVEGS 163
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ + G Y+ G++ LT LN+ + +S + L L
Sbjct: 164 KYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSL 223
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N+ ++S +G + S + +L SLN+ IG EG ++ + L L + ++G G
Sbjct: 224 NIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGYNEIGVEGA 283
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+++SG+ +L S+N+ + I + ++ + L SLN+ +I +
Sbjct: 284 KYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGE 328
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 25/237 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L S+D+ +++ G ++ + L SL+ + QIS G +++ G+ +LTSL +
Sbjct: 95 SEMNQLTSLDIHSNEIGVEGSKYISEMKQLTSLNIGYN-QISVEGAKYISGMKSLTSL-Y 152
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW--------- 164
N I +G K + + L L++ G + G+ L SLNI +
Sbjct: 153 IGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEEGAKYISGMKSLTSLNIGYNQIGVEGSK 212
Query: 165 --------------CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
N I+ K +SG+ +L SL I +++ G Y+ +++LT LN
Sbjct: 213 YISEMKQLTSLNIGHNEISVEGSKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLN 272
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
+ + +S + SL LN+ Q+ +G + S + L SLN+ IG+E
Sbjct: 273 IGYNEIGVEGAKYISGMKSLTSLNIGYNQIGVEGSKYISEMKQLTSLNIGHNEIGEE 329
>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]
Length = 589
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 199/449 (44%), Gaps = 69/449 (15%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ A + G V+ +WM + + L ++LS V+ S L + S+L
Sbjct: 58 LEVFKHSAEEVDVRGDN-SVDAEWMAYLGAY-RHLRYLNLSDCHRVSTSALWPITGMSSL 115
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
Q LD + C +++D G+ H+ + NL L ++TA+G+K A L NL LDL
Sbjct: 116 QELDLSRCFKVNDAGINHILSIPNLERLRISET-SVTAKGVKLLASLKNLSLLDLGGLPV 174
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +L +++ W + I++ L+ L L ++ + VT L L
Sbjct: 175 DDVALTSLQVLKRLHYIDL-WGSKISNKGASVLNTFPKLTYLNLAWTSVTK-----LPKL 228
Query: 204 QKLTLLNLEGCPVTAACLDSLSAL------GSLF--------YLNLNRCQLSDDGCEKF- 248
L LN+ C + + D + L G++F Y N N D F
Sbjct: 229 SFLEYLNMSNCTIDSILEDDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFH 288
Query: 249 -----SRLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LT 300
S++ +E LNL SC +GD+ +V G NLK L LS T+V S+GL L+G +
Sbjct: 289 RFFFLSKMKVIEHLNLSSCMMGDDSVEMVACAG-GNLKSLNLSGTRVSSAGLGILAGHVP 347
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKS-------------------------------- 328
+LE ++LS T + D ++ ++ + SLK
Sbjct: 348 HLEILSLSQTPVDDTAISFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLK 407
Query: 329 ---LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
LNL+ Q+ D L L+S L +L L A + D YL + L +L IC LT
Sbjct: 408 LERLNLEHTQVRDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLT 467
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ G+ K +L LL+L LT+ T+
Sbjct: 468 NYGLDMFKAPETLKLLDLKGCWLLTEDTI 496
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 179/426 (42%), Gaps = 80/426 (18%)
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
R +N++ A+ M +L L+L C R+ L + G+ L+ L++ C + D+
Sbjct: 71 RGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLSRCFKVNDAG 130
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ + + NL+ L+IS + VT G+ L L+ L+LL+L G PV L SL L L Y
Sbjct: 131 INHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTSLQVLKRLHY 190
Query: 233 LNLNRCQLSDDGCE-------------------KFSRLTNLESLNLDSCGI--------- 264
++L ++S+ G K +L+ LE LN+ +C I
Sbjct: 191 IDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTIDSILEDDKA 250
Query: 265 --------------------------------GDEGLVNLTGLCNLKCLE---LSDTQVG 289
+ L +K +E LS +G
Sbjct: 251 PLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVIEHLNLSSCMMG 310
Query: 290 SSGLRHLS-GLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSL 347
+ ++ NL+S+NLS T +S L LAG + L+ L+L + DT ++ ++ +
Sbjct: 311 DDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPVDDTAISFISMM 370
Query: 348 TGLTHLDLFGARI--------TDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
L +DL I TD + L+N K L L + + D + +
Sbjct: 371 PSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLK-LERLNLEHTQVRDEALYPLSSF 429
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L+L ++ +L D +L +S + L +L++ ++ +T+ GL K + L+ L L+ C
Sbjct: 430 QELRYLSL-KSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPETLKLLDLKGC 488
Query: 456 KVTAND 461
+ D
Sbjct: 489 WLLTED 494
>gi|290974552|ref|XP_002670009.1| predicted protein [Naegleria gruberi]
gi|284083563|gb|EFC37265.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 143/287 (49%), Gaps = 1/287 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I + K +S + L L + + + + G+ Y+ G+++LT LN+ + + +
Sbjct: 73 NNIDEEGAKYISEMQYLAILNMLGNNIGNEGVKYISGMKQLTHLNVSENNIGLDGVKYIV 132
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ L +LN+ + + D+G + +T L L + CGI EG+ +++ L L L +S
Sbjct: 133 EMKQLTHLNIGQNSIGDEGAKLIGEMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISS 192
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ +++SG+ L + + I D + L + L +N+ ++T G+ LT
Sbjct: 193 NMLYDDSTKYISGMNQLTYLRIHDNNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLT 252
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L LT +D+ I D+GA Y+ K L +L++ + + G K+I ++ LT+L L +
Sbjct: 253 GLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWK 312
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
N N+ + + IS L L L++S + I G +++ + L +L +
Sbjct: 313 N-NIRGEGAKYISKLEKLTELDISENHIDEKGAKYISEMSQLNALDI 358
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 152/342 (44%), Gaps = 27/342 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +D+ G+++ + G ++ + L L+ I + G++++ G+ LT L+ NN
Sbjct: 64 QLTQLDIDGNNIDEEGAKYISEMQYLAILNM-LGNNIGNEGVKYISGMKQLTHLNVSENN 122
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G+K + L L++ + N I D K +
Sbjct: 123 -IGLDGVKYIVEMKQLTHLNIGQ-------------------------NSIGDEGAKLIG 156
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+T L L I ++ GI ++ L KLT LN+ + +S + L YL ++
Sbjct: 157 EMTQLLDLCIFYCGISSEGIKHISKLDKLTDLNISSNMLYDDSTKYISGMNQLTYLRIHD 216
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D+G + ++ L +N+ + EG+ LTGL L +++S +G +G +++S
Sbjct: 217 NNIGDEGAKFLGKMKQLTGINIWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYIS 276
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ L ++++S I + + + + L L L I G ++ L LT LD+
Sbjct: 277 EMKQLTNLDVSDNNIGEEGAKYIGNMKQLTILTLWKNNIRGEGAKYISKLEKLTELDISE 336
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
I + GA Y+ L +L+I + + G K+IK++ LT
Sbjct: 337 NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
+ Q G+N W + + ++G L+ +D+S +++ D+G ++ + L +LD +
Sbjct: 230 MKQLTGIN-IWRNELTAEGVKFLTGLDKLTEIDISSNNIGDNGAKYISEMKQLTNLDVSD 288
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
I + G +++ + LT L+ +NN I +G K + L L +LD+
Sbjct: 289 N-NIGEEGAKYIGNMKQLTILTLWKNN-IRGEGAKYISKLEKLTELDISE---------- 336
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N I + K +S ++ L +L IS + + + G Y+K +++LT
Sbjct: 337 ---------------NHIDEKGAKYISEMSQLNALDISVNIIGNQGAKYIKEMKQLT 378
>gi|46445968|ref|YP_007333.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399609|emb|CAF23058.1| hypothetical protein pc0334 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 616
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 145/295 (49%), Gaps = 48/295 (16%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQY-PGVNDKWMDVIASQGSSLLSVDLSG--S 67
F+E Y LT++ L A + L D L P VN L ++LSG S
Sbjct: 312 FSEYAY---LTDIHLLALKSWELTDARLAHLAPLVN-------------LRHLNLSGDMS 355
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD+GL HL NLQ L+ ++C +++D GL HLR L NL L+ N +T G+
Sbjct: 356 NLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHL 415
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNC-ITDSDMKPLSGLTNLKSL 185
L+NL L+L +C ++ GL +L L+ L+ L++ WC T + + L+ L +L+ L
Sbjct: 416 RPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYL 475
Query: 186 QI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ C+++TD G+ +L L L L+L GC L+D G
Sbjct: 476 NLCCCNELTDIGLMHLTPLVNLQHLDLSGCD-----------------------NLTDAG 512
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELS--DTQVGSSGLRHL 296
+ L NL+ LNL C + GL++LT L NL+ L LS + +GL HL
Sbjct: 513 LMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVLSWYSPDLNEAGLAHL 567
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 141/264 (53%), Gaps = 16/264 (6%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + E + + N I + + LT++ L + ++TD+ +A+L L L LNL G
Sbjct: 293 LTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSG 352
Query: 214 --CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGL 269
+T A L L+ L +L +LNL+ C +L+DDG L NL+ LNL C + D GL
Sbjct: 353 DMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGL 412
Query: 270 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-----FTGISDGSLRKLAGL 323
+L L NL+ L LS ++ +GL HL+ L NL+ ++LS FTG L LA L
Sbjct: 413 AHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTG---AGLAYLAPL 469
Query: 324 SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI-C 380
L+ LNL ++TD GL LT L L HLDL G +TD+G +L + NL+ L + C
Sbjct: 470 IDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRC 529
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLS 404
LT G+ H+ L +L L LS
Sbjct: 530 CDNLTKTGLMHLTSLVNLRQLVLS 553
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 121/237 (51%), Gaps = 9/237 (3%)
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLE 282
+ L + L L +L+D + L NL LNL D + D GL +LT L NL+ L
Sbjct: 316 AYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLN 375
Query: 283 LSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDT 339
L ++ GL HL L NL+ +NL ++D L L L +L+ LNL ++TD
Sbjct: 376 LHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDA 435
Query: 340 GLAALTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS 396
GLA LT L L HLDL + +GA AYL +L+ L +C LTD G+ H+ L
Sbjct: 436 GLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTPLV 495
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTL 452
+L L+LS NLTD L ++ L L LN+ +T GL HL L NLR L L
Sbjct: 496 NLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCCDNLTKTGLMHLTSLVNLRQLVL 552
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 117/217 (53%), Gaps = 8/217 (3%)
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD--TQVGSSGLRHLSGLTNLES 304
+++ LT++ L L S + D L +L L NL+ L LS + + +GL HL+ L NL+
Sbjct: 314 EYAYLTDIHLLALKSWELTDARLAHLAPLVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQH 373
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARIT 361
+NL + ++D L L L +L+ LNL ++TD GLA L L L HL+L ++T
Sbjct: 374 LNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLT 433
Query: 362 DSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
D+G A+L NL+ L++ C T AG+ ++ L L LNL LTD L ++
Sbjct: 434 DAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPLIDLQYLNLCCCNELTDIGLMHLTP 493
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L++S +T AGL HL L NL+ L L C
Sbjct: 494 LVNLQHLDLSGCDNLTDAGLMHLTSLVNLQHLNLRCC 530
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 12/216 (5%)
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+F ++ N + ++ + + L LK EL+D ++ HL+ L NL +N
Sbjct: 295 EFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLA-----HLAPLVNLRHLN 349
Query: 307 LS--FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITD 362
LS + ++D L L L +L+ LNL ++TD GLA L SL L HL+L ++TD
Sbjct: 350 LSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNLHCCNKLTD 409
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ-NCNLTDKTLELISGL 420
+G A+LR NL+ L + LTDAG+ H+ L +L L+LS N T L ++ L
Sbjct: 410 AGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPLNFTGAGLAYLAPL 469
Query: 421 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L LN+ + +T GL HL PL NL+ L L C
Sbjct: 470 IDLQYLNLCCCNELTDIGLMHLTPLVNLQHLDLSGC 505
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
V SS L S LT E I F +G + + A L+ + L L + ++TD LA L
Sbjct: 282 VVSSLLNQASHLTEFEKIINYFANAIEGLNFSEYAYLTDIHLLALKSWELTDARLAHLAP 341
Query: 347 LTGLTHLDLFG--ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
L L HL+L G + +TD+G A+L NL+ L + LTD G+ H++ L +L LNL
Sbjct: 342 LVNLRHLNLSGDMSNLTDAGLAHLTPLVNLQHLNLHWCDKLTDDGLAHLRSLVNLQHLNL 401
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKV 457
LTD L + L L LN+S ++T AGL HL PL NL+ L L C +
Sbjct: 402 HCCNKLTDAGLAHLRPLVNLQHLNLSKCPKLTDAGLAHLTPLVNLQHLDLSWCPL 456
>gi|290970785|ref|XP_002668255.1| predicted protein [Naegleria gruberi]
gi|284081550|gb|EFC35511.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 149/292 (51%), Gaps = 2/292 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI + N I D +K +S + L SL I+ + + G Y+ +++LT L++
Sbjct: 1 MKQLTSLNINYNN-IGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISD 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + +S + L LN+ ++ +G + S + L SL+++ IG EG ++
Sbjct: 60 NNIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYIS 119
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L++S +G G + +S + L S+N+ I D + ++ + L SLN+
Sbjct: 120 EMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISD 179
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
I G ++ + LT L++ I D GA Y+ K L SL I + D G K+I
Sbjct: 180 NNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
++ LT L+++ N + + +LIS + L SLN++++ I G ++L +K
Sbjct: 240 EMKQLTSLDINWN-KIGVEGAKLISEMKQLTSLNINDNNIGVEGAKYLSEMK 290
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 27/314 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S++++ +++ D G+ + + L SLD N+ I G +++ + LTSL NN
Sbjct: 4 LTSLNINYNNIGDEGVKLISEMKQLTSLDINYN-NIGVEGAKYISEMKQLTSLDISDNN- 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G+K LI+ +K +L SLNI+ N I K +S
Sbjct: 62 IGVEGVK----LISEMK--------------------QLTSLNIR-INEIGVEGAKYISE 96
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I+C+ + G Y+ +++LT L++ + +S + L LN+ R
Sbjct: 97 MKQLTSLDINCNNIGVEGAKYISEMKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRN 156
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ D+G + S + L SLN+ IG EG ++ + L L ++ ++G G +++S
Sbjct: 157 EIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISE 216
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S+ I D + ++ + L SL+++ +I G ++ + LT L++
Sbjct: 217 MKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276
Query: 359 RITDSGAAYLRNFK 372
I GA YL K
Sbjct: 277 NIGVEGAKYLSEMK 290
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 27/318 (8%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L SL+ N+ I D G++ + + LTSL NN I +G K + + L LD+
Sbjct: 4 LTSLNINYN-NIGDEGVKLISEMKQLTSLDINYNN-IGVEGAKYISEMKQLTSLDISDNN 61
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
G+ + + +L SLNI+ N I K +S + L SL I+C+ + G Y+
Sbjct: 62 IGVEGVKLISEMKQLTSLNIR-INEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT L++ S + +G +G + S + L SLN+
Sbjct: 121 MKQLTSLDI-----------SWNNIGV-------------EGAKLISEMKQLTSLNIRRN 156
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IGDEG ++ + L L +SD +G G + +S + L S+N+++ I D + ++
Sbjct: 157 EIGDEGAKYISEMKQLTSLNISDNNIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISE 216
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ +I D G ++ + LT LD+ +I GA + K L SL I
Sbjct: 217 MKQLTSLNISWNKIGDEGAKYISEMKQLTSLDINWNKIGVEGAKLISEMKQLTSLNINDN 276
Query: 383 GLTDAGVKHIKDLSSLTL 400
+ G K++ ++ T+
Sbjct: 277 NIGVEGAKYLSEMKRKTI 294
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 7/250 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+ L LN+N + D+G + S + L SL+++ IG EG ++ + L L++SD
Sbjct: 1 MKQLTSLNINYNNIGDEGVKLISEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDN 60
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+G G++ +S + L S+N+ I + ++ + L SL+++ I G ++
Sbjct: 61 NIGVEGVKLISEMKQLTSLNIRINEIGVEGAKYISEMKQLTSLDINCNNIGVEGAKYISE 120
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ LT LD+ I GA + K L SL I + D G K+I ++ LT LN+S N
Sbjct: 121 MKQLTSLDISWNNIGVEGAKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDN 180
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TAN 460
N+ + +LIS + L SLN++ + I G +++ +K L SL + K+ +
Sbjct: 181 -NIGVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYIS 239
Query: 461 DIKRLQSRDL 470
++K+L S D+
Sbjct: 240 EMKQLTSLDI 249
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 138/276 (50%), Gaps = 12/276 (4%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF---NFCIQISDG 97
Y + D+ + +I S+ L S+D++ +++ G ++ + L SLD N ++
Sbjct: 11 YNNIGDEGVKLI-SEMKQLTSLDINYNNIGVEGAKYISEMKQLTSLDISDNNIGVE---- 65
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMK 156
G++ + + LTSL+ R N I +G K + + L LD+ C I G + + +
Sbjct: 66 GVKLISEMKQLTSLNIRI-NEIGVEGAKYISEMKQLTSLDI-NCNNIGVEGAKYISEMKQ 123
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L SL+I W N + K +S + L SL I +++ D G Y+ +++LT LN+ +
Sbjct: 124 LTSLDISWNNIGVEG-AKLISEMKQLTSLNIRRNEIGDEGAKYISEMKQLTSLNISDNNI 182
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+S + L LN+N ++ D+G + S + L SLN+ IGDEG ++ +
Sbjct: 183 GVEGAKLISEMKQLTSLNINWNEIGDEGAKYISEMKQLTSLNISWNKIGDEGAKYISEMK 242
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L L+++ ++G G + +S + L S+N++ I
Sbjct: 243 QLTSLDINWNKIGVEGAKLISEMKQLTSLNINDNNI 278
>gi|335058613|gb|AEH26502.1| leucine-rich repeat domain protein [uncultured Acidobacteria
bacterium A11]
Length = 402
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 4/269 (1%)
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
S++RN+ + + A L +L+ LDL GL + L LE LN+ +TD+
Sbjct: 136 SYKRNDTLVDAWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLT-LTPVTDA 194
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L+GLTNL+ L ++ +K T G +L L++L N PV A L +S + L
Sbjct: 195 HLEHLAGLTNLRVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLE 254
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L + C +D G ++L NLE L + S + LT L L+ L+L D Q +
Sbjct: 255 RLEIVHCHFTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAE 314
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G+RH S + +L + + I D +A LS+L+ L + +TD L L L
Sbjct: 315 GVRHASRIPSLRVLRI-HGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQ 373
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L++ G +ITD A L+ + L +LE+
Sbjct: 374 RLEIKGNKITDPALARLQ--QALPALEVV 400
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 119/259 (45%), Gaps = 3/259 (1%)
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
A LD L+ L L L+L ++ G + L NLE LNL + D L +L GL NL
Sbjct: 146 AWLDRLADLPDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLTPVTDAHLEHLAGLTNL 205
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
+ L L+ + G R L L LE+ N FT ++D L ++ ++ L+ L + TD
Sbjct: 206 RVLSLASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHCHFTD 265
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G L L L L + T + L LR L++ T GV+H + SL
Sbjct: 266 AGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHASRIPSL 325
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+L + + + D+ I+ L+ L L +N+ +T L H L L+ L ++ K+T
Sbjct: 326 RVLRI--HGQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKGNKIT 383
Query: 459 ANDIKRLQSRDLPNLVSFR 477
+ RLQ + LP L R
Sbjct: 384 DPALARLQ-QALPALEVVR 401
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 123/261 (47%), Gaps = 6/261 (2%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D W+D +A L+S+DL+ + V GL + NL+ L+ ++D LEHL GL
Sbjct: 145 DAWLDRLADL-PDLISLDLANTGVAGPGLKVVGTLKNLERLNLTLT-PVTDAHLEHLAGL 202
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+NL LS + T +G + L L + GL + + LE L I C
Sbjct: 203 TNLRVLSL-ASAKCTGEGFRFLGKLKQLENANFHFTPVNDAGLAGISTVTGLERLEIVHC 261
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ TD+ L+ L NL+ LQI T + I L L KL L+L+ TA + S
Sbjct: 262 H-FTDAGAPHLAKLVNLERLQIGSRDATGAAIEPLTALTKLRELDLQDNQATAEGVRHAS 320
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ SL L ++ Q+ D+G ++L+NLE L ++ G+ D+ L + L L+ LE+
Sbjct: 321 RIPSLRVLRIH-GQIKDEGAASIAQLSNLEILVANNAGLTDDALDHFARLPRLQRLEIKG 379
Query: 286 TQVGSSGLRHL-SGLTNLESI 305
++ L L L LE +
Sbjct: 380 NKITDPALARLQQALPALEVV 400
>gi|290977067|ref|XP_002671260.1| predicted protein [Naegleria gruberi]
gi|284084827|gb|EFC38516.1| predicted protein [Naegleria gruberi]
Length = 378
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 179/392 (45%), Gaps = 44/392 (11%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQSLDF+ + LS+ N +T G+KA A L L K++ R
Sbjct: 3 NLQSLDFS----------------TTTNELSYNHNYIVT-NGLKAIAELKQLKKINFHRN 45
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL + +L L+I CN I K +S L LK L I+ + + D G Y+
Sbjct: 46 QIGQNGLQTISQFNQLLCLDIS-CNGIGIEGAKAVSELNQLKELDITANDIGDIGAKYIS 104
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----------------- 244
+++LT L + + + S+ L L LN++ + D+G
Sbjct: 105 QMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNNIGDEGMKVISGMKHLTKLSVHN 164
Query: 245 -------CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ S++ L +L++ IG EG+ ++ L L L++S Q+G+ G +S
Sbjct: 165 NHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQLSQLTRLKISSNQIGARGAILIS 224
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L L +++ I+D L+ L L L L D QI + G+ ++ L LT LD+ G
Sbjct: 225 KLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFNQIGNEGVKSIIQLKQLTFLDIGG 284
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I+ GA ++ K LR+L I + + G K I +L+ L +L++ +N L+D+ ++ I
Sbjct: 285 NNISHKGAQFINQLKQLRTLYISENQIGNKGAKLISELTQLRILHIRKN-ELSDEGVKSI 343
Query: 418 SGLTGLVSLNV-SNSRITSAGLRHLKPLKNLR 448
+ L L++ N IT L LK+L+
Sbjct: 344 LLMKQLTELDLRENYDITVRMENQLSTLKSLK 375
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 118/250 (47%), Gaps = 1/250 (0%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ L +++ L L +N +R Q+ +G + S+ L L++ GIG EG ++ L
Sbjct: 23 IVTNGLKAIAELKQLKKINFHRNQIGQNGLQTISQFNQLLCLDISCNGIGIEGAKAVSEL 82
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
LK L+++ +G G +++S + L + + + I+ + L L LN+
Sbjct: 83 NQLKELDITANDIGDIGAKYISQMKELTKLYVRYNDINSQGASSIGELHQLTKLNISYNN 142
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D G+ ++ + LT L + I + ++ K L +L I + GV+ I L
Sbjct: 143 IGDEGMKVISGMKHLTKLSVHNNHINVGSSQFISQMKQLTNLSISENHIGIEGVETISQL 202
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
S LT L +S N + + LIS L L L++ ++RI GL+ L LK+L L +
Sbjct: 203 SQLTRLKISSN-QIGARGAILISKLDKLTKLSIGSNRINDEGLKSLCRLKHLTKLKADFN 261
Query: 456 KVTANDIKRL 465
++ +K +
Sbjct: 262 QIGNEGVKSI 271
>gi|290981666|ref|XP_002673551.1| predicted protein [Naegleria gruberi]
gi|284087135|gb|EFC40807.1| predicted protein [Naegleria gruberi]
Length = 438
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 170/375 (45%), Gaps = 28/375 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+++ + + + G+ +L +C L S + + IS G +L L LT+L R
Sbjct: 31 GIELTSIEIGYNRIGNEGVKYLSECKELTSANL-YGNNISAEGASYLTKLK-LTNLDIRT 88
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + A+G K L L L++ G L L +L +L I CN I + K
Sbjct: 89 N-ELGAEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLTNLGIN-CNRIGEEGAKS 146
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP------------- 215
+S + L +L IS + + ++G+ Y+ + LT L + EGC
Sbjct: 147 ISEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIRKLKQLTRLSI 206
Query: 216 ----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ A +S + L +L +N + ++G E S+L NL L++ IG EG +
Sbjct: 207 YDNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISHNEIGSEGAKH 266
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ L CL S ++ + +LS LT L + + + I D S++ + L SL L L
Sbjct: 267 ISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYL 326
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ I+D G ++ LT LT L + I+D G +L L L++ + + G ++
Sbjct: 327 NGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGAEY 386
Query: 392 IKDLSSLTLLNLSQN 406
I ++ L L + N
Sbjct: 387 INEMKQLKHLAIQAN 401
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 8/290 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L ++D+S + + ++G+ ++ + NL +L + G + +R L LT LS
Sbjct: 148 SEMKQLTNLDISNNYIGETGVEYVSEMGNLTTLTI-IENNLRAEGCKKIRKLKQLTRLSI 206
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I A+G K + + L+ L++ + + G + L L L+I N I
Sbjct: 207 Y-DNKIGAEGAKFISEMEQLMFLEINNNSIRNEGTEYISQLGNLTELDISH-NEIGSEGA 264
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L L+ S +K+ YL L +LT L + + + S++ L SL L
Sbjct: 265 KHISQFKQLTCLRFSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTIL 324
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
LN +SD+GC+ S LT L L++ I DEG L+ L L L++S ++G+ G
Sbjct: 325 YLNGNNISDNGCKNISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGA 384
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+++ + L+ + I ++R + + LK+L +D ++ T A
Sbjct: 385 EYINEMKQLKHL-----AIQANNIRNESKIDQLKTLLIDKTKVEVTNYKA 429
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 140/308 (45%), Gaps = 25/308 (8%)
Query: 43 GVNDKWMDVIASQGSSLL-------SVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQ 93
GVND I ++G+ L ++ ++ + + + G + + L +LD N+
Sbjct: 111 GVND-----ICAEGAKYLVALNQLTNLGINCNRIGEEGAKSISEMKQLTNLDISNNY--- 162
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGG--LVN 150
I + G+E++ + NLT+L+ NN + A+G K L L +L + + G +
Sbjct: 163 IGETGVEYVSEMGNLTTLTIIENN-LRAEGCKKIRKLKQLTRLSIYDNKIGAEGAKFISE 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
++ LM LE N N I + + +S L NL L IS +++ G ++ ++LT L
Sbjct: 222 MEQLMFLEINN----NSIRNEGTEYISQLGNLTELDISHNEIGSEGAKHISQFKQLTCLR 277
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ A + LS L L L + + DD + + L +L L L+ I D G
Sbjct: 278 FSYNKINAESFEYLSTLTQLTDLRICSSSIGDDSIKSITNLKSLTILYLNGNNISDNGCK 337
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
N++ L L L ++ + G + LS LT L +++S+ I + + + LK L
Sbjct: 338 NISELTQLTDLSMALNNISDEGCKFLSQLTQLTELDVSYNRIGNIGAEYINEMKQLKHLA 397
Query: 331 LDARQITD 338
+ A I +
Sbjct: 398 IQANNIRN 405
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L SI + + I + ++ L+ L S NL I+ G + LT L LT+LD+ +
Sbjct: 34 LTSIEIGYNRIGNEGVKYLSECKELTSANLYGNNISAEGASYLTKLK-LTNLDIRTNELG 92
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGL 420
GA ++ L+ L I + G K++ L+ LT NL NCN + ++ + IS +
Sbjct: 93 AEGAKFIGQLSQLKILNIGVNDICAEGAKYLVALNQLT--NLGINCNRIGEEGAKSISEM 150
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L +L++SN+ I G+ ++ + NL +LT+ + A K+++
Sbjct: 151 KQLTNLDISNNYIGETGVEYVSEMGNLTTLTIIENNLRAEGCKKIR 196
>gi|290980799|ref|XP_002673119.1| predicted protein [Naegleria gruberi]
gi|284086700|gb|EFC40375.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 179/378 (47%), Gaps = 5/378 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S + SG ++ L L FC D +HL L +LT L N I +G K
Sbjct: 43 SKIDPSGFKYICSLEQLTDLYMTFCYFGFDIA-KHLPSLKSLTYL-LITGNYIGVEGAKY 100
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L +L + G + GL +L LNI+ N IT K +S + L L+
Sbjct: 101 IGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITMDGAKFISEMKQLTGLK 159
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
I + + D G ++ G+++LT L++ + +S + ++ L++ + +DG +
Sbjct: 160 IVGNNICDEGAKFISGMKQLTNLDIASNNIGENGAKYVSEMMNIRKLDIGFNSI-NDGVK 218
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
F + L LN++SC IG +G ++ L L +++ + G H+S + NL ++
Sbjct: 219 CFGEMKQLTDLNVNSCCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLD 278
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+S I D ++ ++ ++ L LN+ + IT G+ + + LT+L + I + A
Sbjct: 279 ISDNRIRDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSAN 338
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
+ K+L L I + D G K I ++ LT L++ N + D+ ++ +SG+ L L
Sbjct: 339 QISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN-EIGDEGVKALSGMKQLTRL 397
Query: 427 NVSNSRITSAGLRHLKPL 444
N ++ I+ G ++++ +
Sbjct: 398 NAVDNNISDEGEKYIREM 415
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 149/318 (46%), Gaps = 9/318 (2%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L + G + G
Sbjct: 117 IGPEGAKYISGLEQLTFLNIRAN-EITMDGAKFISEMKQLTGLKIVGNNICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N++ L I + + D G+ +++LT LN+
Sbjct: 176 MKQLTNLDIA-SNNIGENGAKYVSEMMNIRKLDIGFNSIND-GVKCFGEMKQLTDLNVNS 233
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
C + +S+ L +L++ ++ G S++ NL L++ I D G+ +++
Sbjct: 234 CCIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGVQSIS 293
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L +S + G++++ + NL + ++ I + S +++ + L L++
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQLSIYH 353
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ D G ++ + LT LD+ I D G L K L L ++D G K+I+
Sbjct: 354 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGEKYIR 413
Query: 394 DLSSLTLLNLSQNCNLTD 411
+ +NL+ + ++ D
Sbjct: 414 E------MNLADHVDIYD 425
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 145/315 (46%), Gaps = 17/315 (5%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSG---LIHLKDCSNLQSLDFNFCIQISDGGLEH 101
I +G+ +S +++ +++T G + +K + L+ + N C D G +
Sbjct: 117 IGPEGAKYISGLEQLTFLNIRANEITMDGAKFISEMKQLTGLKIVGNNIC----DEGAKF 172
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ G+ LT+L NN I G K + ++N+ KLD+ I+ G+ + +L LN
Sbjct: 173 ISGMKQLTNLDIASNN-IGENGAKYVSEMMNIRKLDI-GFNSINDGVKCFGEMKQLTDLN 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ C CI K +S L L I+ + +T G ++ ++ L L++ + +
Sbjct: 231 VNSC-CIGLDGTKYISSFNQLTHLSIAENLITPYGAIHISQMKNLIKLDISDNRIRDNGV 289
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
S+S + L LN++ ++ G + ++ NL L + IG++ ++ + +L L
Sbjct: 290 QSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGEKSANQISEMKHLAQL 349
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+ VG G + +S + L +++ + I D ++ L+G+ L LN I+D G
Sbjct: 350 SIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKALSGMKQLTRLNAVDNNISDEGE 409
Query: 342 AALTSLTGLTHLDLF 356
+ + H+D++
Sbjct: 410 KYIREMNLADHVDIY 424
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 264 IGDEGLVN---LTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
I +EG N L + LK L + ++++ SG +++ L L + ++F +
Sbjct: 17 IENEGGFNCEILDSMKELKKLNIEFNSKIDPSGFKYICSLEQLTDLYMTFCYFGFDIAKH 76
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L SL L + I G + + L L + I GA Y+ + L L I
Sbjct: 77 LPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNI 136
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+T G K I ++ LT L + N N+ D+ + ISG+ L +L+++++ I G +
Sbjct: 137 RANEITMDGAKFISEMKQLTGLKIVGN-NICDEGAKFISGMKQLTNLDIASNNIGENGAK 195
Query: 440 HLKPLKNLRSLTL 452
++ + N+R L +
Sbjct: 196 YVSEMMNIRKLDI 208
>gi|168700559|ref|ZP_02732836.1| hypothetical protein GobsU_13597 [Gemmata obscuriglobus UQM 2246]
Length = 446
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 159/343 (46%), Gaps = 12/343 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKL 157
L L+GL +T ++F + +T + AG +L L C R+ G G L L +L
Sbjct: 95 LATLKGLKCVTEVTFASDR-LTDTDLACIAGFEHLRSFGLRDCGRVTGAGFGVLAQLPRL 153
Query: 158 ESLNIKWCN---CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
KW + +TD L + L+++ + +K TD+G+ L L L +N+
Sbjct: 154 -----KWVSLVGPVTDEAGPHLGRIKTLETVVLYRTKFTDAGLKELAALPALGSVNVTAT 208
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
PVT + L ++ + + G E S L L +L LD+ + D GL +L
Sbjct: 209 PVTGTAF-AEPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLDATAVTDSGLKHLAR 267
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ L L+DT V +G+ L+G+ L +NL TG++ + + L+ LNL
Sbjct: 268 ARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAET 327
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+ TD + L L LT+L L G +TD+G A L + K L +L++ G D +
Sbjct: 328 RFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGT 387
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
L+ L +++ + LTD L+ + L L V S++T G
Sbjct: 388 LAELEVVSF-RGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 166/364 (45%), Gaps = 31/364 (8%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T G A G + + +ER + L LKGL + + + +TD+D+ ++G
Sbjct: 70 VTVHGPGADGGCV----VRVERTADLAPALATLKGLKCVTEVTFA-SDRLTDTDLACIAG 124
Query: 179 LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L+S + C +VT +G L L +L ++L G PVT L + +L + L R
Sbjct: 125 FEHLRSFGLRDCGRVTGAGFGVLAQLPRLKWVSLVG-PVTDEAGPHLGRIKTLETVVLYR 183
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGI-----------------------GDEGLVNLTG 274
+ +D G ++ + L L S+N+ + + GL ++
Sbjct: 184 TKFTDAGLKELAALPALGSVNVTATPVTGTAFAEPGWSRLREIDATQTAFNAAGLEAVSA 243
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L L L T V SGL+HL+ L+ ++L+ T ++D + LAG+ +L+ LNL+
Sbjct: 244 LPVLGTLTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERT 303
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+T A L L+L R TD+ ++L L +L + G +TDAG+ + D
Sbjct: 304 GVTGAAFATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLAD 363
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L L L+L+ D E+ L L ++ +++T AGL+ LR L +
Sbjct: 364 LKKLANLDLT-GTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRG 422
Query: 455 CKVT 458
KVT
Sbjct: 423 SKVT 426
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 8/274 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD HL L+++ + + +D GL+ L L L S+ N T AFA
Sbjct: 162 VTDEAGPHLGRIKTLETVVL-YRTKFTDAGLKELAALPALGSV----NVTATPVTGTAFA 216
Query: 129 --GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G L ++D + GL + L L +L + +TDS +K L+ L+ L
Sbjct: 217 EPGWSRLREIDATQTAFNAAGLEAVSALPVLGTLTLD-ATAVTDSGLKHLARARALQELS 275
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + V D+G+A L G+Q L +LNLE VT A + L LNL + +D
Sbjct: 276 LADTPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETRFTDASGS 335
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+RL L +L+L C + D GL L L L L+L+ T+ G L LE ++
Sbjct: 336 HLARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVS 395
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
T ++D L+ A + L+ L + ++T G
Sbjct: 396 FRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 127/301 (42%), Gaps = 15/301 (4%)
Query: 77 LKDCSNLQSLDFNFCIQ------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
L+DC + F Q ++D HL + L ++ R T G+
Sbjct: 133 LRDCGRVTGAGFGVLAQLPRLKWVSLVGPVTDEAGPHLGRIKTLETVVLYRTK-FTDAGL 191
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
K A L L +++ T + G G +L ++ + ++ +S L L +
Sbjct: 192 KELAALPALGSVNVT-ATPVTGTAFAEPGWSRLREIDATQ-TAFNAAGLEAVSALPVLGT 249
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + + VTDSG+ +L + L L+L PV + +L+ + +L LNL R ++
Sbjct: 250 LTLDATAVTDSGLKHLARARALQELSLADTPVADTGVAALAGVQTLRVLNLERTGVTGAA 309
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
F L LNL D +L L L L LS V +GL L+ L L +
Sbjct: 310 FATFPVPAELRKLNLAETRFTDASGSHLARLPALTNLSLSGCDVTDAGLARLADLKKLAN 369
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L+ T DG+ L+ L+ ++ Q+TD GL A L L + G+++T G
Sbjct: 370 LDLTGTKAGDGAAEVAGTLAELEVVSFRGTQLTDAGLKAAAHGARLRFLYVRGSKVTKRG 429
Query: 365 A 365
A
Sbjct: 430 A 430
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 3/224 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +D + + +GL + L +L + ++D GL+HL L LS +
Sbjct: 221 SRLREIDATQTAFNAAGLEAVSALPVLGTLTLD-ATAVTDSGLKHLARARALQELSLA-D 278
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ G+ A AG+ L L+LER +L LN+ TD+ L
Sbjct: 279 TPVADTGVAALAGVQTLRVLNLERTGVTGAAFATFPVPAELRKLNLAETR-FTDASGSHL 337
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L +L +S VTD+G+A L L+KL L+L G + L L ++
Sbjct: 338 ARLPALTNLSLSGCDVTDAGLARLADLKKLANLDLTGTKAGDGAAEVAGTLAELEVVSFR 397
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
QL+D G + + L L + + G V+ + C
Sbjct: 398 GTQLTDAGLKAAAHGARLRFLYVRGSKVTKRGAVDAGKVVREGC 441
>gi|54294508|ref|YP_126923.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
gi|53754340|emb|CAH15819.1| hypothetical protein lpl1579 [Legionella pneumophila str. Lens]
Length = 464
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 162/346 (46%), Gaps = 3/346 (0%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++L +++ D G L +L +L+ I D G + L +L++L+ NN I
Sbjct: 48 SLNLRNNNIGDEGAKALAANQSLSTLNL-RANNIGDEGAKALAANQSLSTLNLSYNN-IG 105
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
A+G KA A +L L+L G L L +LN+++ N I D K L+
Sbjct: 106 AEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNN-IGDEGAKALAANQ 164
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L +L + + + D G L Q L+ LNL + A +L+A SL LNL +
Sbjct: 165 SLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNNI 224
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+G + + +L +LNL IGDEG L +L L LS +G G + L+
Sbjct: 225 RAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQ 284
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L ++NLS+ I D + LA SL +LNL I G AL + L+ L+L I
Sbjct: 285 SLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYNNI 344
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
D GA L ++L +L + + G K + SL+ LNLS N
Sbjct: 345 GDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLSYN 390
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 147/297 (49%), Gaps = 2/297 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+++SLN++ N I D K L+ +L +L + + + D G L Q L+ LNL
Sbjct: 45 EIKSLNLR-NNNIGDEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLSYNN 103
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ A +L+A SL LNL + D+G + + +L +LNL IGDEG L
Sbjct: 104 IGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQSLSTLNLRYNNIGDEGAKALAAN 163
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L L L + +G G + L+ +L ++NLS+ I + LA SL +LNL
Sbjct: 164 QSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNLRYNN 223
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I G AL + L+ L+L I D GA L ++L +L + + D G K +
Sbjct: 224 IRAEGAKALAANQSLSTLNLSYNNIGDEGAKALAANQSLSTLNLSYNNIGDEGAKALAAN 283
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
SL+ LNLS N N+ D+ + ++ L +LN+S + I + G + L ++L +L L
Sbjct: 284 QSLSTLNLSYN-NIGDEGAKALAANQSLSTLNLSYNNIRAEGAKALAANQSLSTLNL 339
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 1/272 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL + +++ + + + +L ++ LNL + +L+A SL LNL +
Sbjct: 21 NLSNQKLNAQDIKELIVPFLNTNPEIKSLNLRNNNIGDEGAKALAANQSLSTLNLRANNI 80
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
D+G + + +L +LNL IG EG L +L L L +G G + L+
Sbjct: 81 GDEGAKALAANQSLSTLNLSYNNIGAEGAKALAANQSLSTLNLRANNIGDEGAKALAANQ 140
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L ++NL + I D + LA SL +LNL I D G AL + L+ L+L I
Sbjct: 141 SLSTLNLRYNNIGDEGAKALAANQSLSTLNLRNNNIGDEGAKALAANQSLSTLNLSYNNI 200
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA L ++L +L + + G K + SL+ LNLS N N+ D+ + ++
Sbjct: 201 RAEGAKALAANQSLSTLNLRYNNIRAEGAKALAANQSLSTLNLSYN-NIGDEGAKALAAN 259
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L +LN+S + I G + L ++L +L L
Sbjct: 260 QSLSTLNLSYNNIGDEGAKALAANQSLSTLNL 291
>gi|290979162|ref|XP_002672303.1| predicted protein [Naegleria gruberi]
gi|284085879|gb|EFC39559.1| predicted protein [Naegleria gruberi]
Length = 371
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 27/355 (7%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ L LT+L NN I A+G++ L L L + G +L L +L
Sbjct: 42 GAKYISELKQLTNLDISYNN-IGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQL 100
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + N I +K + L L L I +KV D G YL L++LT LN+ +
Sbjct: 101 TYLYTAFNN-IGVEGVKYIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNIC 159
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
A G E + + L LN+ + IG EG + L
Sbjct: 160 A------------------------KGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQ 195
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L CL + + + G +++S + L +N+S+ I + + L L L + I
Sbjct: 196 LTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYIC 255
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT+L+++ I D GA Y+ K L +L+I + GVK+I +L+
Sbjct: 256 DEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQ 315
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LT+L+ S N N+ D+ + IS L L +L++S++ I+ G++ + +K+L L +
Sbjct: 316 LTILSASLN-NIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEI 369
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 9/355 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + +S + + G ++ + L +LD ++ I G+EH+ L LT L
Sbjct: 23 SELKQLTHLYISSNKIGVEGAKYISELKQLTNLDISYN-NIGAEGVEHIGNLKQLTFLCI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLN-IKWC-NCITD 170
NN I +G K + L L L T + G+ +K ++KL+ L+ + C N + D
Sbjct: 82 YHNN-IGDEGAKHLSALKQLTYL----YTAFNNIGVEGVKYIIKLKQLSYLNICSNKVGD 136
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K LS L L +L IS S + G+ ++ + +LT+LN+ + + L L
Sbjct: 137 EGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILNISTNNIGIEGAKYIGKLKQL 196
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LN+ + +G + S + L LN+ IG EG + L L CL + + +
Sbjct: 197 TCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAKYIGKLKQLTCLTIYNNYICD 256
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G +++S L L ++N+ I D + ++ L L +L++ QI G+ + L L
Sbjct: 257 EGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNLDISVNQIGAKGVKYIAELNQL 316
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L I D GA Y+ K L +L+I ++ GVK +++ LT+L + Q
Sbjct: 317 TILSASLNNIRDEGAKYISELKQLTNLDISSNNISIEGVKCFEEMKHLTVLEIYQ 371
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 148/315 (46%), Gaps = 5/315 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+K L KL S N N I + K +S L L L IS +K+ G Y+ L++LT L+
Sbjct: 1 MKSLTKLISCN----NNIGVEEAKYISELKQLTHLYISSNKIGVEGAKYISELKQLTNLD 56
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ + A ++ + L L +L + + D+G + S L L L IG EG+
Sbjct: 57 ISYNNIGAEGVEHIGNLKQLTFLCIYHNNIGDEGAKHLSALKQLTYLYTAFNNIGVEGVK 116
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ L L L + +VG G ++LS L L ++N+S + I + + ++ L LN
Sbjct: 117 YIIKLKQLSYLNICSNKVGDEGAKYLSELKQLTNLNISNSNICAKGVEHITEMNQLTILN 176
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I G + L LT L+++ + I GA Y+ K L L I + G K
Sbjct: 177 ISTNNIGIEGAKYIGKLKQLTCLNIYYSNIDIEGAKYISEMKQLTDLNISYNNIGIEGAK 236
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+I L LT L + N + D+ + IS L L +LN+ ++ I G +++ LK L +L
Sbjct: 237 YIGKLKQLTCLTIYNNY-ICDEGAKYISELNQLTNLNIYSNNIGDEGAKYISELKQLTNL 295
Query: 451 TLESCKVTANDIKRL 465
+ ++ A +K +
Sbjct: 296 DISVNQIGAKGVKYI 310
>gi|290980071|ref|XP_002672756.1| predicted protein [Naegleria gruberi]
gi|284086335|gb|EFC40012.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 3/353 (0%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D++ + + D G + +L SL+ + QI G + + G+ +L SLS
Sbjct: 15 SEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISLSI 73
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K +G+ +L LD+ R G ++ + +L SLNI + N I
Sbjct: 74 G-DNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMKQLTSLNI-YYNQIGAEGA 131
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +SG+ L SL I +++ Y+ +++LT L++ + S+S + L L
Sbjct: 132 KSISGMKQLTSLDIGGNQIGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSL 191
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N+ ++ +G + S + L SLN+ S IG EG + + +L L + ++G G
Sbjct: 192 NIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGS 251
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+++S + L S+++ + I + ++ + L SL + QI G ++ + LT L
Sbjct: 252 KYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSL 311
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
D+ +I D G+ ++ K+L SL + + D G K I + LT L + N
Sbjct: 312 DIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYN 364
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 156/307 (50%), Gaps = 2/307 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ G+ L SLNI N I K +SG+ +L SL I +++ G + G++ LT L+
Sbjct: 38 ISGMKHLTSLNIDR-NQIGVEGAKLISGMKSLISLSIGDNQIGVEGAKLISGMKHLTSLD 96
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ + S+S + L LN+ Q+ +G + S + L SL++ IG E
Sbjct: 97 INRNQIGVEGAKSISRMKQLTSLNIYYNQIGAEGAKSISGMKQLTSLDIGGNQIGVEESK 156
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
++ + L L++ + Q+G G + +SG+ L S+N+ F I + ++ + L SLN
Sbjct: 157 YISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLN 216
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ + +I G + + LT L+++ I D G+ Y+ K L SL+I + G K
Sbjct: 217 IGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAK 276
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+I ++ LT L +S N + + + IS + L SL++++++I G + + +K+L SL
Sbjct: 277 YISEMKQLTSLGISDN-QIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSL 335
Query: 451 TLESCKV 457
+ S ++
Sbjct: 336 NVNSNQI 342
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 151/313 (48%), Gaps = 17/313 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ + + + G + +L SLD N QI G + + + LTSL+ N
Sbjct: 67 SLISLSIGDNQIGVEGAKLISGMKHLTSLDINRN-QIGVEGAKSISRMKQLTSLNIYYNQ 125
Query: 118 AITAQGMKAFAGLINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
I A+G K+ +G+ L LD+ E I + +L SL+I + N I
Sbjct: 126 -IGAEGAKSISGMKQLTSLDIGGNQIGVEESKYISE-------MKQLTSLDI-YNNQIGV 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K +SG+ L SL I +++ G + +++LT LN+ + + + L
Sbjct: 177 EGAKSISGMKQLTSLNIGFNRIGVEGSKLISEMKQLTSLNIGSNEIGVEGSKFIPEMKHL 236
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LN+ ++ D+G + S + L SL++ IG EG ++ + L L +SD Q+G
Sbjct: 237 TSLNIYYNEIGDEGSKYISEMKQLTSLDIYYNEIGVEGAKYISEMKQLTSLGISDNQIGV 296
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G + +S + L S++++ I D + ++ + SL SLN+++ QI D G ++ + L
Sbjct: 297 EGAKFISEMKLLTSLDIADNQIGDEGSKFISEMKSLTSLNVNSNQIGDEGAKLISGMKQL 356
Query: 351 THLDLFGARITDS 363
T L ++ +I ++
Sbjct: 357 TSLKIYYNQIGET 369
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 3/293 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D++ + + G + L SL+ + QI G + + G+ LTSL N
Sbjct: 92 LTSLDINRNQIGVEGAKSISRMKQLTSLNIYYN-QIGAEGAKSISGMKQLTSLDIG-GNQ 149
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I + K + + L LD+ G ++ G+ +L SLNI + N I K +S
Sbjct: 150 IGVEESKYISEMKQLTSLDIYNNQIGVEGAKSISGMKQLTSLNIGF-NRIGVEGSKLISE 208
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G ++ ++ LT LN+ + +S + L L++
Sbjct: 209 MKQLTSLNIGSNEIGVEGSKFIPEMKHLTSLNIYYNEIGDEGSKYISEMKQLTSLDIYYN 268
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ +G + S + L SL + IG EG ++ + L L+++D Q+G G + +S
Sbjct: 269 EIGVEGAKYISEMKQLTSLGISDNQIGVEGAKFISEMKLLTSLDIADNQIGDEGSKFISE 328
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ +L S+N++ I D + ++G+ L SL + QI +T L ++ S+T T
Sbjct: 329 MKSLTSLNVNSNQIGDEGAKLISGMKQLTSLKIYYNQIGETLLMSVISITAET 381
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
++ K+L SL+I + D G K I + LT LN+ +N + + +LISG+ L+SL
Sbjct: 13 FISEMKHLTSLDIADNQIGDEGSKFISGMKHLTSLNIDRN-QIGVEGAKLISGMKSLISL 71
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRLQ 466
++ +++I G + + +K+L SL + ++ A I R++
Sbjct: 72 SIGDNQIGVEGAKLISGMKHLTSLDINRNQIGVEGAKSISRMK 114
>gi|329905907|ref|ZP_08274287.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
gi|327547418|gb|EGF32242.1| hypothetical protein IMCC9480_2692 [Oxalobacteraceae bacterium
IMCC9480]
Length = 552
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 212/423 (50%), Gaps = 37/423 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S +TD+GL L + L+ LD C I D GL HL +++LT L+ R+ IT G++
Sbjct: 47 SKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVRQCTNITDAGLEQ 106
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L L +L+L C RI G+ +LK L L L++ C+ I+++ + L L L
Sbjct: 107 LANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAIAHLKA-HQLTEL 164
Query: 186 QIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
+S C+ D G A+L + L L+L GC T + L L+ +L L+L C D
Sbjct: 165 NLSDCTGFGDEGFAHLAEV-PLQTLDLSGCTGFTNSGLRFLNK-STLTRLSLRNCTQLDF 222
Query: 244 GCE-KFSRLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELS---DTQVGSSGLRHLS 297
G + +L L+L C EGL N LT L +L L +T + +GL L+
Sbjct: 223 GATFRLYGAQSLRHLDLAGC----EGLDNTALTALQDLPLEHLDLARNTFLNDTGLESLA 278
Query: 298 GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 355
+T+L +NLS ++D +L LA L +L+ L L + R+ TD GLA L+ L L L+L
Sbjct: 279 EMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLEL 337
Query: 356 FG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+T++ A L L+ L++ G L+DAG+ H+ D+++L L+LS N N TD
Sbjct: 338 VDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTD- 396
Query: 413 TLELISGLTGLVSLNVSNSR------ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+G L L + R +T G+ L + L+SL L C + + + +L
Sbjct: 397 -----AGAVALRELPLGQLRLNGWIGLTDQGMTALSGMP-LQSLGLIGCDNIDGSGLAQL 450
Query: 466 QSR 468
SR
Sbjct: 451 NSR 453
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 143/500 (28%), Positives = 210/500 (42%), Gaps = 135/500 (27%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIK 163
+ +LT+L+ N+ +T G+ + A L L +LDL CT I GL +L + L LN++
Sbjct: 35 IRHLTNLNLSNNSKLTDAGLASLAPLTALKQLDLGHCTGIGDTGLAHLGNMASLTQLNVR 94
Query: 164 WCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACL 221
C ITD+ ++ L+ L L L ++ C ++T +GIA+LK L LT L+L GC ++ A +
Sbjct: 95 QCTNITDAGLEQLANLPRLARLNLAGCHRITAAGIAHLKKL-PLTYLDLSGCSGISNAAI 153
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN--LESLNLDSC-GIGDEGL-----VNLT 273
L A L LNL+ C + G E F+ L L++L+L C G + GL LT
Sbjct: 154 AHLKA-HQLTELNLSDC--TGFGDEGFAHLAEVPLQTLDLSGCTGFTNSGLRFLNKSTLT 210
Query: 274 GLCNLKCLELSDTQV----GSSGLRHL----------SGLTNLESINLSF------TGIS 313
L C +L G+ LRHL + LT L+ + L T ++
Sbjct: 211 RLSLRNCTQLDFGATFRLYGAQSLRHLDLAGCEGLDNTALTALQDLPLEHLDLARNTFLN 270
Query: 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF 371
D L LA ++SL+ LNL +TD LA L L L HL L R TD+G A L +
Sbjct: 271 DTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHL 330
Query: 372 K-------------------------NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 405
L+ L++ G L+DAG+ H+ D+++L L+LS
Sbjct: 331 PLETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSW 390
Query: 406 NCN------------------------LTDKTLELISGL---------------TGLVSL 426
N N LTD+ + +SG+ +GL L
Sbjct: 391 NRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALSGMPLQSLGLIGCDNIDGSGLAQL 450
Query: 427 N--------VSNSR-------------------------ITSAGLRHLKPLKNLRSLTLE 453
N +S+ R IT AGL HL L+ R
Sbjct: 451 NSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAGLAHLTGLQLTRLDLTY 510
Query: 454 SCKVTANDIKRLQSRDLPNL 473
+ VT +K L L L
Sbjct: 511 NSGVTDEGLKNLSGMPLQQL 530
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 189/398 (47%), Gaps = 43/398 (10%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +DLSG S ++++ + HLK L L+ + C D G HL + L +L
Sbjct: 136 PLTYLDLSGCSGISNAAIAHLK-AHQLTELNLSDCTGFGDEGFAHLAEVP-LQTLDLSGC 193
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
T G++ F L +L L CT++ G L G L L++ C + ++ +
Sbjct: 194 TGFTNSGLR-FLNKSTLTRLSLRNCTQLDFGATFRLYGAQSLRHLDLAGCEGLDNTALTA 252
Query: 176 LSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYL 233
L L L+ L ++ + + D+G+ L + L LNL G +T A L L+ L +L +L
Sbjct: 253 LQDLP-LEHLDLARNTFLNDTGLESLAEMTSLRYLNLSGGADMTDAALAHLAELPALQHL 311
Query: 234 NLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSD-TQVG 289
LN C+ +D G + S L LE+L L C + + L L G L+ L+LS T +
Sbjct: 312 ILNNCRRTTDAGLAQLSHLP-LETLELVDCVALTNTALARLPGAAATLQKLDLSGCTALS 370
Query: 290 SSGLRHLSGLTNLESINLS----FTGISDGSLRKLA---------------GLSSLKSLN 330
+GL HL+ +T L ++LS FT +LR+L G+++L +
Sbjct: 371 DAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELPLGQLRLNGWIGLTDQGMTALSGMP 430
Query: 331 LDA------RQITDTGLAALTSLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICG-G 382
L + I +GLA L S L DL R+ D YLR L+ L++ G
Sbjct: 431 LQSLGLIGCDNIDGSGLAQLNSRC-LQKFDLSHCRLLNDDAMIYLRRLP-LKELDLSWCG 488
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
+TDAG+ H+ L LT L+L+ N +TD+ L+ +SG+
Sbjct: 489 AITDAGLAHLTGLQ-LTRLDLTYNSGVTDEGLKNLSGM 525
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 42/223 (18%)
Query: 20 LTEVSLEAFR--DC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLI 75
L+ + LE DC AL + L + PG ++L +DLSG + ++D+GL
Sbjct: 327 LSHLPLETLELVDCVALTNTALARLPGA-----------AATLQKLDLSGCTALSDAGLA 375
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL----- 130
HL D + L+ LD ++ +D G LR L L L +T QGM A +G+
Sbjct: 376 HLADITTLRKLDLSWNRNFTDAGAVALRELP-LGQLRLNGWIGLTDQGMTALSGMPLQSL 434
Query: 131 ---------------IN---LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N L K DL C ++ + + L+ L++ WC ITD+
Sbjct: 435 GLIGCDNIDGSGLAQLNSRCLQKFDLSHCRLLNDDAMIYLRRLPLKELDLSWCGAITDAG 494
Query: 173 MKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+GL L L ++ S VTD G+ L G+ L L + GC
Sbjct: 495 LAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM-PLQQLRVLGC 535
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 127/300 (42%), Gaps = 61/300 (20%)
Query: 56 GSSLLSVDLS-------------------------------------------------- 65
SL +DL+
Sbjct: 231 AQSLRHLDLAGCEGLDNTALTALQDLPLEHLDLARNTFLNDTGLESLAEMTSLRYLNLSG 290
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G+D+TD+ L HL + LQ L N C + +D GL L L L +L A+T +
Sbjct: 291 GADMTDAALAHLAELPALQHLILNNCRRTTDAGLAQLSHLP-LETLELVDCVALTNTALA 349
Query: 126 AFAG-LINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
G L KLDL CT + GL +L + L L++ W TD+ L L L
Sbjct: 350 RLPGAAATLQKLDLSGCTALSDAGLAHLADITTLRKLDLSWNRNFTDAGAVALRELP-LG 408
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L+++ +TD G+ L G+ L L L GC + + L L++ L +L+ C+L
Sbjct: 409 QLRLNGWIGLTDQGMTALSGM-PLQSLGLIGCDNIDGSGLAQLNSR-CLQKFDLSHCRLL 466
Query: 242 DDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGL 299
+D + R L+ L+L CG I D GL +LTGL L L+L+ ++ V GL++LSG+
Sbjct: 467 NDDAMIYLRRLPLKELDLSWCGAITDAGLAHLTGL-QLTRLDLTYNSGVTDEGLKNLSGM 525
>gi|290981696|ref|XP_002673566.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087150|gb|EFC40822.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 411
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 159/322 (49%), Gaps = 31/322 (9%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
LS + NN +G F I +K+D E T + + L+ + +L L++++ N TD
Sbjct: 74 LSLKCNNDDKLKGQ--FLQNIETLKVDRESLTIMFDCKI-LEFMKQLTDLDVQYNNLGTD 130
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPVTAACLDSLSAL 227
++K +S L L++L IS + + G Y+ L +LT LN+ G C T +S++
Sbjct: 131 -EVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGA-KHISSM 188
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L YL++++ ++ D+G + S L L SL + + IGDEG +++G+ L L++S
Sbjct: 189 KQLTYLDISKNEIGDEGAKSISELKQLTSLYILTNNIGDEGAKHISGMNQLTELDISFNL 248
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGS-----------------------LRKLAGLS 324
+G G+RH+S + L S++++ I DG+ ++++ L
Sbjct: 249 IGIEGVRHISSMKQLTSLSINNAKIGDGAKYLGAMSQLTNLNIFSCNIESNGAKQISALQ 308
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
LK L + Q+ G ++ + L L + G I + GA ++ K L +L IC +
Sbjct: 309 QLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKHISGMKRLTTLNICENNI 368
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
D G K I SLT+L++ N
Sbjct: 369 GDNGAKFISQSKSLTILSIYSN 390
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 32/360 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD--------------VTDSGLIHLKDCSNLQSLD-- 87
V+ +W++V+ +G LS+ + D V L + DC L+ +
Sbjct: 60 VSKQWLNVVVERGK--LSLKCNNDDKLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQL 117
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRN-----NAITAQGMKAFAGLINLVKLDLE--- 139
+ +Q ++ G + ++ +S L L RN N I +G K + L L KL++
Sbjct: 118 TDLDVQYNNLGTDEVKYISQLKQL---RNLDISINNIDKEGAKYISQLSQLTKLNISGNC 174
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
C G ++ + +L L+I N I D K +S L L SL I + + D G +
Sbjct: 175 YCIGTEGA-KHISSMKQLTYLDISK-NEIGDEGAKSISELKQLTSLYILTNNIGDEGAKH 232
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+ G+ +LT L++ + + +S++ L L++N ++ D G + ++ L +LN+
Sbjct: 233 ISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKIGD-GAKYLGAMSQLTNLNI 291
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
SC I G ++ L LK L + Q+G G +++S + L+S+ + I + +
Sbjct: 292 FSCNIESNGAKQISALQQLKFLGIGYNQLGHEGAKNISEMKQLDSLYICGNDIGERGAKH 351
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
++G+ L +LN+ I D G ++ LT L ++ I+ G +L+ K L L+I
Sbjct: 352 ISGMKRLTTLNICENNIGDNGAKFISQSKSLTILSIYSNDISQVGEKFLQRMKQLERLDI 411
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L + L +++ + + ++ ++ L L++L++ I G ++ L+ LT L++
Sbjct: 111 LEFMKQLTDLDVQYNNLGTDEVKYISQLKQLRNLDISINNIDKEGAKYISQLSQLTKLNI 170
Query: 356 FG--ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
G I GA ++ + K L L+I + D G K I +L LT L + N N+ D+
Sbjct: 171 SGNCYCIGTEGAKHISSMKQLTYLDISKNEIGDEGAKSISELKQLTSLYILTN-NIGDEG 229
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+ ISG+ L L++S + I G+RH+ +K L SL++ + K+
Sbjct: 230 AKHISGMNQLTELDISFNLIGIEGVRHISSMKQLTSLSINNAKI 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 319 KLAG--LSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
KL G L ++++L +D +T L + LT LD+ + Y+ K LR
Sbjct: 83 KLKGQFLQNIETLKVDRESLTIMFDCKILEFMKQLTDLDVQYNNLGTDEVKYISQLKQLR 142
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRIT 434
+L+I + G K+I LS LT LN+S NC + + + IS + L L++S + I
Sbjct: 143 NLDISINNIDKEGAKYISQLSQLTKLNISGNCYCIGTEGAKHISSMKQLTYLDISKNEIG 202
Query: 435 SAGLRHLKPLKNLRSLTL 452
G + + LK L SL +
Sbjct: 203 DEGAKSISELKQLTSLYI 220
>gi|290978443|ref|XP_002671945.1| predicted protein [Naegleria gruberi]
gi|284085518|gb|EFC39201.1| predicted protein [Naegleria gruberi]
Length = 381
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 4/277 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NLKSL I + + D + + ++ LTLL++ + +S + L LN+N
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + + L L + C I +EG ++ L NL L L +G G ++S
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG---LAALTSLTGLTHLDL 355
+ NL +N+ T ++ R ++GL +LKSL + QI G ++ + L GLT LD+
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G I D G YL NL L+I + G++ I + L LN+S N +L +
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSN-DLGSSGAK 239
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LISG++ L SLN+S +R+ G + + + N+ L +
Sbjct: 240 LISGMSNLTSLNISANRLLGEGAKFIGEMHNVTILVI 276
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 172/351 (49%), Gaps = 7/351 (1%)
Query: 100 EHLRGLSNLTSLSF--RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
EHL+ +S + L+ N +G + +G++ L L++ + G + + +L
Sbjct: 17 EHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDNYILDEGAKFIGTMKQL 76
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L +K+C I + + +S L NL L + + + D G +Y+ + LT LN+ +T
Sbjct: 77 TLLKMKYCE-IREEGARAISELKNLTFLNLHGNFIGDKGASYISEMVNLTHLNVGSTQLT 135
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL-NLDSCG--IGDEGLVNLTG 274
A +S L +L L ++ Q+ G + S + +LE L +LD G I D+G+ L+
Sbjct: 136 AEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGNSILDQGVQYLSE 195
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ NL L++ VG G+ + G+ L S+N+S + + ++G+S+L SLN+ A
Sbjct: 196 MSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISGMSNLTSLNISAN 255
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ G + + +T L + I D GA ++ K L+SL ++ G + I +
Sbjct: 256 RLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYNRISSKGFESISE 315
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ LT L++ N + K + + L L SLNV ++ I GL+ + LK
Sbjct: 316 MKQLTSLDIGYNS-IDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQLK 365
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 39/361 (10%)
Query: 69 VTDSGLI--HLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITA 121
+ +GL+ HLK+ S ++ L + +S+ G E + G+ LT+L+ +N I
Sbjct: 9 IVGNGLVDEHLKEISEMKGLTL---LDVSENKFGKEGAEKISGMVGLTTLNIN-DNYILD 64
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G K + L L ++ C G + L L LN+ N I D +S + N
Sbjct: 65 EGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLH-GNFIGDKGASYISEMVN 123
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRC 238
L L + +++T G ++ GL+ L L + + A + ++ L L L+++
Sbjct: 124 LTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDVSGN 183
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D G + S ++NL L++ S +G +G+ ++ G+ L L +S +GSSG + +SG
Sbjct: 184 SILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESIIGMKGLISLNVSSNDLGSSGAKLISG 243
Query: 299 LTNLESINLS----------FTG--------------ISDGSLRKLAGLSSLKSLNLDAR 334
++NL S+N+S F G I D + + + LKSLN
Sbjct: 244 MSNLTSLNISANRLLGEGAKFIGEMHNVTILVIRNNDIGDEGAKFICKMKQLKSLNAVYN 303
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+I+ G +++ + LT LD+ I GA +R KNL SL + + D G+K I
Sbjct: 304 RISSKGFESISEMKQLTSLDIGYNSIDSKGAKSVRKLKNLTSLNVRSNMIDDEGLKAIGQ 363
Query: 395 L 395
L
Sbjct: 364 L 364
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 2/217 (0%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ NL+SL++ G+ DE L ++ + L L++S+ + G G +SG+ L ++N++
Sbjct: 1 MQNLKSLSIVGNGLVDEHLKEISEMKGLTLLDVSENKFGKEGAEKISGMVGLTTLNINDN 60
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I D + + + L L + +I + G A++ L LT L+L G I D GA+Y+
Sbjct: 61 YILDEGAKFIGTMKQLTLLKMKYCEIREEGARAISELKNLTFLNLHGNFIGDKGASYISE 120
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLT--LLNLSQNCNLTDKTLELISGLTGLVSLNV 428
NL L + LT G +H+ L +L L++ +Q + K + + L GL SL+V
Sbjct: 121 MVNLTHLNVGSTQLTAEGARHVSGLKNLKSLLIHTNQIGHQGAKWISTMKDLEGLTSLDV 180
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S + I G+++L + NL L + S V I+ +
Sbjct: 181 SGNSILDQGVQYLSEMSNLTHLDIGSNHVGVKGIESI 217
>gi|290980468|ref|XP_002672954.1| predicted protein [Naegleria gruberi]
gi|284086534|gb|EFC40210.1| predicted protein [Naegleria gruberi]
Length = 349
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
+ ++ +++LT LN+ G + +S + L LN++ + D+G + S + L S
Sbjct: 96 LKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQLIS 155
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
LN+ IGDEG ++ + L L++S +G G +++SG+ L S+N+ +T I
Sbjct: 156 LNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGIEG 215
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++ + L SLN+ +I G+ ++ + LT L++ R D GA ++ K L S
Sbjct: 216 AKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTS 275
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L ICG VK I ++ LT LN+ N + + + IS + L SLN+ +RI
Sbjct: 276 LNICG------KVKFISEMKQLTSLNIRGN-RIGVEGAKYISEMKQLTSLNIRGNRIGDQ 328
Query: 437 GLRHLKPL 444
GL H L
Sbjct: 329 GLNHENSL 336
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 151/308 (49%), Gaps = 16/308 (5%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIHG 146
N C IS ++ S L + F+ N IT + ++ F + +N + +D++ T +
Sbjct: 36 NNCTLISKQFFNVIKERSKLV-IQFKNN--ITEKRVELFMKSQFMNSI-VDVKFSTNLLE 91
Query: 147 GLVNLK---GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
+ LK + +L SLNI+ N I K +S + L SL IS + + D G Y+ +
Sbjct: 92 AIEQLKFVTEMKQLTSLNIR-GNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEM 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
++L LN+ + +S + L L+++ + D+G + S + L SLN+
Sbjct: 151 KQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTL 210
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
IG EG ++ + L L +S+ ++G G++++S + L S+N+S+ D + ++ +
Sbjct: 211 IGIEGAKFISEMKQLTSLNISENEIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEM 270
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L SLN+ + + ++ + LT L++ G RI GA Y+ K L SL I G
Sbjct: 271 KQLTSLNICGK------VKFISEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNIRGNR 324
Query: 384 LTDAGVKH 391
+ D G+ H
Sbjct: 325 IGDQGLNH 332
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L +T + L L + ++G G +++S + L S+N+S+ I D + ++ + L
Sbjct: 94 EQLKFVTEMKQLTSLNIRGNRIGVEGAKYISEMKQLTSLNISYNVIGDEGAKYISEMKQL 153
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SLN+ +I D G ++ + LT LD+ I D GA Y+ K L SL I +
Sbjct: 154 ISLNIRENEIGDEGAKYISEMKQLTSLDISYNIIGDEGAKYISGMKQLTSLNIYYTLIGI 213
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G K I ++ LT LN+S+N + + ++ IS + L SLN+S +R G + + +K
Sbjct: 214 EGAKFISEMKQLTSLNISEN-EIGIEGVKYISEMKQLTSLNISYNRTGDEGAKFISEMKQ 272
Query: 447 LRSLTL 452
L SL +
Sbjct: 273 LTSLNI 278
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 33/216 (15%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++ +++ D G ++ + L SLD ++ I I D G +++ G+ LTSL
Sbjct: 148 SEMKQLISLNIRENEIGDEGAKYISEMKQLTSLDISYNI-IGDEGAKYISGMKQLTSL-- 204
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N T G++ A I+ +K +L SLNI N I +
Sbjct: 205 --NIYYTLIGIEG-AKFISEMK--------------------QLTSLNIS-ENEIGIEGV 240
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS ++ D G ++ +++LT LN+ G + +S + L L
Sbjct: 241 KYISEMKQLTSLNISYNRTGDEGAKFISEMKQLTSLNICG------KVKFISEMKQLTSL 294
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
N+ ++ +G + S + L SLN+ IGD+GL
Sbjct: 295 NIRGNRIGVEGAKYISEMKQLTSLNIRGNRIGDQGL 330
>gi|406833162|ref|ZP_11092756.1| hypothetical protein SpalD1_16026 [Schlesneria paludicola DSM
18645]
Length = 447
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 169/335 (50%), Gaps = 12/335 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKL 206
LV L L+ L I C + D + LSGL L SL ++ S + DSG+ +K +L
Sbjct: 100 LVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALTNSVINDSGVETIVKSFPEL 159
Query: 207 TLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD-SCGI 264
T L+L +T + +S LG L L L + Q++D G ++ S+L L SL+L +
Sbjct: 160 TELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRSLDLRGNMEA 219
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
GD L + GL +L+ + T V SGL +LS LES+ L I+D S LA LS
Sbjct: 220 GDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQSGPHLAKLS 279
Query: 325 SLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSL---EI 379
L L + Q G+ AL + GL L L + D + LR L E+
Sbjct: 280 KLSQLEIFRCQGFGSDGVLALKGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHEL 338
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G DAG+KH+ L SL LL++ +TD+T+++IS L L L++ + +T + +
Sbjct: 339 TSVG--DAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAID 396
Query: 440 HLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
L +K+L+SLT E+ +TA +K+L +R L
Sbjct: 397 KLLTMKSLQSLTFKENGSITAEGLKKLSARKWSKL 431
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 143/335 (42%), Gaps = 55/335 (16%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS++ L+ S+L+ L C ++D + L GL LTSL+ N+ I G++
Sbjct: 92 GSNLQSEDLVLFGKLSDLKKLQIFNCRTLNDEMVAQLSGLKGLTSLALT-NSVINDSGVE 150
Query: 126 AFA-GLINLVKLDLERCTRIHGGLVN-------------------------LKGLMKLES 159
L +LDL T + G+V L L +L S
Sbjct: 151 TIVKSFPELTELDLSSNTNMTNGVVKIISNLGKLQRLTLVQNQINDIGAQRLSKLQELRS 210
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+++ D ++ ++GL +L+S + + V DSG+ YL Q L L L+ +T
Sbjct: 211 LDLRGNMEAGDMTLEVVAGLPHLQSFKHRSTAVNDSGLEYLSQGQALESLLLQDFVITDQ 270
Query: 220 CLDSLSALGSLFYLNLNRCQ-------------------------LSDDGCEKFSRLTNL 254
L+ L L L + RCQ + D E F L L
Sbjct: 271 SGPHLAKLSKLSQLEIFRCQGFGSDGVLALKGMGLIRLTLRDLPNVDDRAMEVFDDLPQL 330
Query: 255 ESLNLDS-CGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L L +GD GL +L GL +L+ L++ + Q+ + +S L NL+ +++ TG+
Sbjct: 331 RRLYLHELTSVGDAGLKHLAGLKSLELLDIWTVPQMTDETVDVISQLPNLKDLSIRVTGV 390
Query: 313 SDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTS 346
+D ++ KL + SL+SL IT GL L++
Sbjct: 391 TDSAIDKLLTMKSLQSLTFKENGSITAEGLKKLSA 425
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
VND ++ + SQG +L S+ L +TD HL S L L+ C G+ L
Sbjct: 242 AVNDSGLEYL-SQGQALESLLLQDFVITDQSGPHLAKLSKLSQLEIFRCQGFGSDGVLAL 300
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+G+ L L+ R + + M+ F L L +L L T + GL +L GL LE L+
Sbjct: 301 KGM-GLIRLTLRDLPNVDDRAMEVFDDLPQLRRLYLHELTSVGDAGLKHLAGLKSLELLD 359
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTA 218
I +TD + +S L NLK L I + VTDS I L K LQ LT E +TA
Sbjct: 360 IWTVPQMTDETVDVISQLPNLKDLSIRVTGVTDSAIDKLLTMKSLQSLTF--KENGSITA 417
Query: 219 ACLDSLSA 226
L LSA
Sbjct: 418 EGLKKLSA 425
>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana]
gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana]
gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana]
gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana]
gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 210/441 (47%), Gaps = 85/441 (19%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCIT 169
+ R +++ A+ M G +NL+ L+L C RI+ L + GL L L++ C +T
Sbjct: 66 IDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVT 125
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+ MK L + NLK L IS + VT+ GI+ L L+KL+LL+L G PVT L SL AL
Sbjct: 126 DAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQALTK 185
Query: 230 LFYLNLNRCQLSDDGCE---KFSRLT----------------NLESLNLDSCGIGDEGLV 270
L YL++ +++ G KFS L+ +LE L++++C I E
Sbjct: 186 LEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKT 245
Query: 271 NLTGLCNLKCLELS------DTQ--------------VGSSGLRHLSGLT---NLESINL 307
+ + L +LK L LS +T+ V + L++ S L NLE ++L
Sbjct: 246 H-SSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDL 304
Query: 308 SFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAAL---------------------- 344
S T D S+ +A + +LK+LN+ QIT +G+ L
Sbjct: 305 SSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSI 364
Query: 345 ----TSLTGLTHLDL-------FGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAG 388
T++ + LDL F I+ + A L++ +L +L + L D
Sbjct: 365 LLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLGDKA 424
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ + L+ LT L+L+ + +LTD TL +S L LVSL V + +TS GL +P LR
Sbjct: 425 LSGLSSLTGLTHLSLT-STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLR 483
Query: 449 SLTLESCK-VTANDIKRLQSR 468
+L L+ C +T +DI L R
Sbjct: 484 TLDLQGCWLLTKDDIAGLCKR 504
>gi|254411467|ref|ZP_05025244.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181968|gb|EDX76955.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 577
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 198/392 (50%), Gaps = 45/392 (11%)
Query: 68 DVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
DVT SGLI+L F QI+D + L GL+NLT LS N I +
Sbjct: 150 DVTPLSGLINLTRL-------ILFSNQITD--ITPLSGLTNLTELSLDNNQII---DVTP 197
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+GL NL +L+L V+L GL L L + N IT+ + LSGLTNL+ L
Sbjct: 198 LSGLANLTELNLYNNQITE---VSLSGLTNLTELYLS-NNQITEVN---LSGLTNLRRLY 250
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+S +++ D I+ L GL LT L+L+ + LS L +L L+L Q+ D
Sbjct: 251 LSTNQIID--ISPLSGLTNLTELDLKYNQIKDVS--PLSGLTNLTELDLKYNQIKD--VS 304
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
S LTNL L L S I D + L+GL NL L LSD ++ + LSGL NL ++
Sbjct: 305 PLSGLTNLTGLYLSSNQIKD--ISPLSGLTNLTLLYLSDNKI--KDISPLSGLINLTGLD 360
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L I D + L+GL +L L+L + +I D ++ L+ LT LT L +IT+
Sbjct: 361 LGSNKIKD--ISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---V 413
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L NL L + +TD V + +L++LT L L+ N +TD + +SGLT L L
Sbjct: 414 SLSGLTNLTELYLRNNQITD--VSSLSELTNLTRLVLNNN-QITD--VSPLSGLTNLTVL 468
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N+SN++IT L L NL L L + ++T
Sbjct: 469 NLSNNQITDVSLSG---LTNLTVLNLSNNQIT 497
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 203/412 (49%), Gaps = 63/412 (15%)
Query: 67 SDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+D+T SGL +L + S LD N I ++ L GL+NLT L+ NN IT
Sbjct: 171 TDITPLSGLTNLTELS----LDNNQIIDVT-----PLSGLANLTELNLY-NNQITE---V 217
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ +GL NL +L L VNL GL L L + I D+ PLSGLTNL L
Sbjct: 218 SLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQII---DISPLSGLTNLTEL 271
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ +++ D ++ L GL LT L+L+ + LS L +L L L+ Q+ D
Sbjct: 272 DLKYNQIKD--VSPLSGLTNLTELDLKYNQIKDVS--PLSGLTNLTGLYLSSNQIKD--I 325
Query: 246 EKFSRLTNLESLNLDSCGIGD----EGLVNLTGL----------------CNLKCLELSD 285
S LTNL L L I D GL+NLTGL NL L+LS
Sbjct: 326 SPLSGLTNLTLLYLSDNKIKDISPLSGLINLTGLDLGSNKIKDISPLSGLINLTGLDLSS 385
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++ + LSGLTNL +L I++ SL +GL++L L L QITD +++L+
Sbjct: 386 NKI--KDISPLSGLTNLTWFSLDNNQITEVSL---SGLTNLTELYLRNNQITD--VSSLS 438
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LT L L +ITD + L NL L + +TD + L++LT+LNLS
Sbjct: 439 ELTNLTRLVLNNNQITD--VSPLSGLTNLTVLNLSNNQITDVSLSG---LTNLTVLNLSN 493
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N +TD + +SGLT L LN+ +++IT + L L NL L L + ++
Sbjct: 494 N-QITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNLTVLILSNNQI 540
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 198/385 (51%), Gaps = 49/385 (12%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHL 102
N++ +V S ++L + LS + +T+ ++L +NL+ L N I IS L
Sbjct: 211 NNQITEVSLSGLTNLTELYLSNNQITE---VNLSGLTNLRRLYLSTNQIIDIS-----PL 262
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE----RCTRIHGGLVNLKGLMKLE 158
GL+NLT L + N + + +GL NL +LDL+ + GL NL GL L
Sbjct: 263 SGLTNLTELDLKYNQI---KDVSPLSGLTNLTELDLKYNQIKDVSPLSGLTNLTGLY-LS 318
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
S IK D+ PLSGLTNL L +S +K+ D I+ L GL LT L+L +
Sbjct: 319 SNQIK--------DISPLSGLTNLTLLYLSDNKIKD--ISPLSGLINLTGLDLGSNKI-- 366
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ LS L +L L+L+ ++ D S LTNL +LD+ I + V+L+GL NL
Sbjct: 367 KDISPLSGLINLTGLDLSSNKIKD--ISPLSGLTNLTWFSLDNNQITE---VSLSGLTNL 421
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L + Q+ + + LS LTNL + L+ I+D S L+GL++L LNL QITD
Sbjct: 422 TELYLRNNQI--TDVSSLSELTNLTRLVLNNNQITDVS--PLSGLTNLTVLNLSNNQITD 477
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+ LT+ LT L+L +ITD + L NL L + +TD + + L++L
Sbjct: 478 VSLSGLTN---LTVLNLSNNQITD--VSPLSGLTNLTGLNLISNQITDVSI--LSGLTNL 530
Query: 399 TLLNLSQNCNLTDKTLELISGLTGL 423
T+L LS N K + +SGLT L
Sbjct: 531 TVLILSNN---QIKDVSPLSGLTNL 552
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 144/294 (48%), Gaps = 52/294 (17%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PLSGLTNL L + +++ D + LS L +L
Sbjct: 83 TDISPLSGLTNLIGLSLWGNQIKD--------------------------VTPLSELTNL 116
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LNL Q+ D S LTNL LNL + I D + L+GL NL L L Q+
Sbjct: 117 TELNLYNNQIKD--VTPLSELTNLTELNLYNNQIKD--VTPLSGLINLTRLILFSNQI-- 170
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ + LSGLTNL ++L I D + L+GL++L LNL QIT+ +L+ LT L
Sbjct: 171 TDITPLSGLTNLTELSLDNNQIID--VTPLSGLANLTELNLYNNQITE---VSLSGLTNL 225
Query: 351 THLDLFGARITDSGAAYLRNFKNL-----RSLEICG-GGLT-----DAGVKHIKDLSSLT 399
T L L +IT+ + L N + L + ++I GLT D IKD+S L+
Sbjct: 226 TELYLSNNQITEVNLSGLTNLRRLYLSTNQIIDISPLSGLTNLTELDLKYNQIKDVSPLS 285
Query: 400 -LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L NL++ +L ++ +S L+GL N++ ++S ++ + PL L +LTL
Sbjct: 286 GLTNLTE-LDLKYNQIKDVSPLSGLT--NLTGLYLSSNQIKDISPLSGLTNLTL 336
>gi|434405931|ref|YP_007148816.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260186|gb|AFZ26136.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 451
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 212/405 (52%), Gaps = 62/405 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L S+++D + L + +NL +LD +S+ + ++ LSNLT+L+ ++
Sbjct: 76 LNLESSEISD--IKPLSNLTNLTTLD------LSENQISDIKPLSNLTNLTDIDLSSNQI 127
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+K + L NL +DL + N I SD+K LS LTN
Sbjct: 128 SDIKVLSNLTNLTDIDLSK-------------------------NQI--SDIKVLSNLTN 160
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L +S ++++D I L L LT + L ++ ++ LS L +L L+L Q+S
Sbjct: 161 LTVLDLSDNQISD--IKVLSNLTNLTSVKLSENQISD--IEVLSNLTNLTVLDLGYNQIS 216
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D + S LTNL L+L + IGD + L+ L NL L L D Q+ S ++ LS LTN
Sbjct: 217 D--IKVLSNLTNLTYLSLWNNQIGDIKV--LSNLTNLTSLSLWDNQI--SDIKPLSNLTN 270
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L S+ L ISD ++ L+ L++L L L QI D + L++LT LT LDL +I
Sbjct: 271 LTSLYLWDNQISD--IKPLSNLTNLTYLYLWDNQIAD--IKPLSNLTNLTDLDLSKNQIG 326
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D L N +L SL++ + A +K + +L++LT L+L +N ++ +EL+S LT
Sbjct: 327 DIKP--LSNLTSLTSLDLSKNQI--ADIKPLSNLTNLTSLSLWRNQSI---DIELLSNLT 379
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIKRL 465
L SL++S ++I+ +KPL NL +LT ++ + +DIK L
Sbjct: 380 NLTSLDLSENQIS-----DIKPLSNLTNLTDIDLSENQISDIKPL 419
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 172/307 (56%), Gaps = 29/307 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL +L +S ++++D I L L LT ++L ++ + LS L +L
Sbjct: 84 SDIKPLSNLTNLTTLDLSENQISD--IKPLSNLTNLTDIDLSSNQISDIKV--LSNLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
++L++ Q+SD + S LTNL L+L I D + L+ L NL ++LS+ Q+
Sbjct: 140 TDIDLSKNQISD--IKVLSNLTNLTVLDLSDNQISDIKV--LSNLTNLTSVKLSENQI-- 193
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S + LS LTNL ++L + ISD ++ L+ L++L L+L QI D + L++LT L
Sbjct: 194 SDIEVLSNLTNLTVLDLGYNQISD--IKVLSNLTNLTYLSLWNNQIGD--IKVLSNLTNL 249
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L L+ +I+D L N NL SL + ++D +K + +L++LT L L N +
Sbjct: 250 TSLSLWDNQISDIKP--LSNLTNLTSLYLWDNQISD--IKPLSNLTNLTYLYLWDN-QIA 304
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESCKVTANDIKRLQSRD 469
D ++ +S LT L L++S ++I +KPL NL SLT L+ K DIK L +
Sbjct: 305 D--IKPLSNLTNLTDLDLSKNQI-----GDIKPLSNLTSLTSLDLSKNQIADIKPL--SN 355
Query: 470 LPNLVSF 476
L NL S
Sbjct: 356 LTNLTSL 362
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 71 DSGLIHLKDCSNLQSL-DFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
D+ + +K SNL +L D + QI G ++ L L++LTSL +N +K +
Sbjct: 300 DNQIADIKPLSNLTNLTDLDLSKNQI--GDIKPLSNLTSLTSLDLSKNQI---ADIKPLS 354
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL L L R I L L L L SL++ N I SD+KPLS LTNL + +S
Sbjct: 355 NLTNLTSLSLWRNQSIDIEL--LSNLTNLTSLDLS-ENQI--SDIKPLSNLTNLTDIDLS 409
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
++++D I L L KL L ++ P+
Sbjct: 410 ENQISD--IKPLSNLTKLEDLQIQNNPI 435
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 34/166 (20%)
Query: 48 WMDVIA-----SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
W + IA S ++L +DLS + + D + L + ++L SLD + QI+D ++ L
Sbjct: 299 WDNQIADIKPLSNLTNLTDLDLSKNQIGD--IKPLSNLTSLTSLDLSKN-QIAD--IKPL 353
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L+NLTSLS RN +I ++ + L NL LDL + ++K L L +L
Sbjct: 354 SNLTNLTSLSLWRNQSI---DIELLSNLTNLTSLDLS-----ENQISDIKPLSNLTNL-- 403
Query: 163 KWCNCITD--------SDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
TD SD+KPLS LT L+ LQI + + D ++
Sbjct: 404 ------TDIDLSENQISDIKPLSNLTKLEDLQIQNNPILDKICPFI 443
>gi|46447550|ref|YP_008915.1| hypothetical protein pc1916 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401191|emb|CAF24640.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 310
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 126/234 (53%), Gaps = 13/234 (5%)
Query: 247 KFSRLTN-----LESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 299
+F R+ N +E LN L+ + + L+ L NLK L L Q + GL HL+ L
Sbjct: 66 EFERIINHFSKKIEGLNFLNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLL 125
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
T L+ ++LS ++D L L L L+ L L+A +TD GL LT LT L HLDL
Sbjct: 126 TALQHLDLSGCWNLTDAGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSD 185
Query: 358 -ARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+TD+G A+L+ L+ L + C LTDAG+ H+ L+ L L LS NLTD L
Sbjct: 186 CMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLV 245
Query: 416 LISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
+ LT L LN+ N R +T AGL HL PLK L+ L L C KVT + R ++
Sbjct: 246 HLKPLTALQHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 125/251 (49%), Gaps = 32/251 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+ + +T++ L+ LKDC NL++L C ++D GLEHL L+ L L
Sbjct: 84 LNQAYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLD----------- 132
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+G NL GLV+L L+ L+ L + C +TD + L+ LT L+
Sbjct: 133 ---LSGCWNLTD----------AGLVHLTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQ 179
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ-L 240
L +S C +TD+G+A+LK L L L L C +T A L L+ L L YL L+ C L
Sbjct: 180 HLDLSDCMNLTDAGLAHLKPLTALQHLGLSCCENLTDAGLAHLAPLTGLQYLALSDCMNL 239
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRH 295
+DDG LT L+ LNL +C + D GL +LT L L+ L L T G + +
Sbjct: 240 TDDGLVHLKPLTALQHLNLRNCRNVTDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKT 299
Query: 296 LSGLTNLESIN 306
L+ NL IN
Sbjct: 300 LAASLNLRIIN 310
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 29/247 (11%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK 247
+ +T++ + LK + L L LE C +T L+ L+ L +L +L+L+ C L+D G
Sbjct: 87 AYLTNAHLLALKDCKNLKALYLEACQALTDDGLEHLTLLTALQHLDLSGCWNLTDAGLVH 146
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 305
+ L L+ L L++C + D+GLV+LT L L+ L+LSD + +GL HL LT L+ +
Sbjct: 147 LTPLVGLQHLKLNACYNLTDDGLVHLTPLTALQHLDLSDCMNLTDAGLAHLKPLTALQHL 206
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDS 363
LS ++D L LA L+ L+ L L D +TD GL L LT L HL+L
Sbjct: 207 GLSCCENLTDAGLAHLAPLTGLQYLALSDCMNLTDDGLVHLKPLTALQHLNL-------- 258
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
RN +N+ TDAG+ H+ L +L LNL + +T+ L L
Sbjct: 259 -----RNCRNV----------TDAGLAHLTPLKALQQLNLRRCDKVTNTGLARFKTLAAS 303
Query: 424 VSLNVSN 430
++L + N
Sbjct: 304 LNLRIIN 310
>gi|325109499|ref|YP_004270567.1| hypothetical protein Plabr_2946 [Planctomyces brasiliensis DSM
5305]
gi|324969767|gb|ADY60545.1| leucine-rich repeat cysteine-containing subtype [Planctomyces
brasiliensis DSM 5305]
Length = 381
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 132/262 (50%), Gaps = 7/262 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ- 122
L S+ D LI + CS L++LD C +S+ GL HL GL L +L + T
Sbjct: 105 LRESNAGDDALIAVGKCSQLENLDLREC-PVSNAGLAHLVGLEKLKALRLSGQSGATTVD 163
Query: 123 --GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
GM++ A L L L L+ GL LK L L L + + D D+K LS
Sbjct: 164 DGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLA-STLVGDEDLKALSQFP 222
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRC 238
L+ L++S S+++ GI + L KL L++ E ++ + SLS L L LNL R
Sbjct: 223 ELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNLWRV 282
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+SD G E + LT L LNLD+ + D GL L + LK L L TQ+ ++GL LS
Sbjct: 283 PISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSE 342
Query: 299 LTNLESINLSFTGISDGSLRKL 320
L +L+ + ++ T ++ + KL
Sbjct: 343 LKSLDKLVVTRTAVNQEGVDKL 364
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++S + E ++L L SL L GD+ L+ + L+ L+L + V ++GL HL G
Sbjct: 85 EVSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVG 144
Query: 299 LTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L+++ LS T + DG + +A L LK L LD I+ GL L LT L L
Sbjct: 145 LEKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELY 204
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L + D L F LR L + L+ G++ I LS L L++S++ +L++
Sbjct: 205 LASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDD 264
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ +S LT L LN+ I+ AG+ HL PL L L L++ +++
Sbjct: 265 ISSLSKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLS 309
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 144/267 (53%), Gaps = 7/267 (2%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L L L KL SL ++ N D+ + + + L++L + V+++G+A+L GL+KL
Sbjct: 90 ALEALAKLPKLRSLLLRESNAGDDA-LIAVGKCSQLENLDLRECPVSNAGLAHLVGLEKL 148
Query: 207 TLLNLEG----CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
L L G V ++S++ L L L L+ +S DG ++ LT+L L L S
Sbjct: 149 KALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYLAST 208
Query: 263 GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 320
+GDE L L+ L+ L +S +Q+ G++ +S L+ LE +++S + +S+ + L
Sbjct: 209 LVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSL 268
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ L+ L LNL I+D G+ L LT LT L+L +++D+G + L+ K L+ L +
Sbjct: 269 SKLTKLTKLNLWRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLG 328
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+++AG+ + +L SL L +++
Sbjct: 329 STQISNAGLPQLSELKSLDKLVVTRTA 355
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 152/311 (48%), Gaps = 32/311 (10%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
++ ++ L+ L L+SL + S D + + +L L+L CPV+ A L L L
Sbjct: 86 VSPEALEALAKLPKLRSLLLRESNAGDDALIAVGKCSQLENLDLRECPVSNAGLAHLVGL 145
Query: 228 GSLFYLNLN----RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L L L+ + D G E ++L L+ L LD I +GL L L +L+ L L
Sbjct: 146 EKLKALRLSGQSGATTVDDGGMESVAKLPQLKVLALDFLWISGDGLQQLKPLTDLRELYL 205
Query: 284 SDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGL 341
+ T VG L+ LS L + +S + +S +++++ LS L+ L++ + +++ +
Sbjct: 206 ASTLVGDEDLKALSQFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDI 265
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++L+ LT LT L+L+ I+D AGV+H+ L+ LT L
Sbjct: 266 SSLSKLTKLTKLNLWRVPISD------------------------AGVEHLAPLTKLTWL 301
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
NL N L+D L + + L L++ +++I++AGL L LK+L L + V
Sbjct: 302 NLD-NTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQLSELKSLDKLVVTRTAVNQEG 360
Query: 462 IKRLQSRDLPN 472
+ +LQ +LP+
Sbjct: 361 VDKLQP-ELPD 370
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V D G+ + L+ L +F + IS GL+ L+ L++L L + + + + +KA +
Sbjct: 162 VDDGGMESVAKLPQLKVLALDF-LWISGDGLQQLKPLTDLREL-YLASTLVGDEDLKALS 219
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L KL + + +++ G G+ + L KLE L++ + +++ D+ LS LT L L +
Sbjct: 220 QFPELRKLRVSKLSQLSGQGIQEISQLSKLEELDVSEDSSLSNDDISSLSKLTKLTKLNL 279
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
++D+G+ +L L KLT LNL+ ++ A L +L + L +L+L Q+S+ G +
Sbjct: 280 WRVPISDAGVEHLAPLTKLTWLNLDNTQLSDAGLSTLKEMKELKFLHLGSTQISNAGLPQ 339
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
S L +L+ L + + EG+ L EL DT++
Sbjct: 340 LSELKSLDKLVVTRTAVNQEGVDKLQP-------ELPDTEI 373
>gi|46445682|ref|YP_007047.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399323|emb|CAF22772.1| hypothetical protein pc0048 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 531
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 4/201 (1%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
+ +TD+ L+ LK+C NL++L C ++D GL L L+NL L+ + +T +G+
Sbjct: 306 NAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLA 365
Query: 126 AFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
F LI L L+L C I GL +LK L+ L+ LN+ C ITD+ + L L L+
Sbjct: 366 HFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQY 425
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
L +S C+ +TD+G+A+L L L L+L C +T A L+ L++L +L +LNL+ C L+
Sbjct: 426 LNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYLT 485
Query: 242 DDGCEKFSRLTNLESLNLDSC 262
+ G + LTNL+ LNL+ C
Sbjct: 486 EAGLTHLTSLTNLQQLNLNHC 506
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 123/232 (53%), Gaps = 11/232 (4%)
Query: 254 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-T 310
+E LN ++ + D L+ L NLK L L + GL L+ LTNL+ +NLS
Sbjct: 298 IEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCD 357
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYL 368
+++ L L +L+ LNL ITD GLA L L L +L+L G A ITD+G A+L
Sbjct: 358 KLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHL 417
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ L+ L + G +TDAG+ H+ L +L L+LS +LT+ LE ++ L L LN
Sbjct: 418 KPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLN 477
Query: 428 VSNS-RITSAGLRHLKPLKNLRSLTLESCKVTAN-DIKRLQSRDL---PNLV 474
+S +T AGL HL L NL+ L L C+ A+ K R L PNL+
Sbjct: 478 LSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLI 529
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 7/207 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK+L + +C +TD G+A L L L LNL C
Sbjct: 297 EIEKLNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCC 356
Query: 215 -PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVN 271
+T L +L +L YLNL+ C ++D G L L+ LNL C I D GL +
Sbjct: 357 DKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAH 416
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
L L L+ L LS + +GL HL+ L L+ ++LS+ +++ L +LA L +L+ L
Sbjct: 417 LKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHL 476
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDL 355
NL +T+ GL LTSLT L L+L
Sbjct: 477 NLSGCIYLTEAGLTHLTSLTNLQQLNL 503
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++TD GL L +NLQ L+ + C ++++ GL H + L L L+ IT G+
Sbjct: 333 NLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHL 392
Query: 128 AGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L+ L L+L C I GL +LK L+ L+ LN+ C ITD+ + L+ L LK L
Sbjct: 393 KPLVALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLD 452
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S C+ +T++G+ L L L LNL GC +T A L L++L +L LNLN C+ D
Sbjct: 453 LSWCNSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADV 512
Query: 245 CEKFSRLTNL 254
K + L
Sbjct: 513 RFKLTHFRTL 522
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 7/224 (3%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGL 269
E +T A L +L +L L+L C L+DDG + LTNL+ LNL C + ++GL
Sbjct: 305 ENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGL 364
Query: 270 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLK 327
+ L L+ L LS + +GL HL L L+ +NLS I+D L L L +L+
Sbjct: 365 AHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPLVALQ 424
Query: 328 SLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGL 384
LNL ITD GLA LT L L HLDL + +T++G L + L+ L + G L
Sbjct: 425 YLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGCIYL 484
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
T+AG+ H+ L++L LNL+ + D +L T L + N+
Sbjct: 485 TEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNL 528
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L ++LSG + +TD+GL HLK LQ L+ + C I+D GL HL L L L
Sbjct: 397 ALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWC 456
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N++T G++ A L+ L L+L C + GL +L L L+ LN+ C D K
Sbjct: 457 NSLTNAGLERLASLVALQHLNLSGCIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFK- 515
Query: 176 LSGLTNLKSL 185
LT+ ++L
Sbjct: 516 ---LTHFRTL 522
>gi|348503268|ref|XP_003439187.1| PREDICTED: hypothetical protein LOC100705990 [Oreochromis
niloticus]
Length = 894
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 191/398 (47%), Gaps = 23/398 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + + R L +LE F C +Q L YP ++ + + + ++L + L
Sbjct: 474 ELAELLLNHMSHERLLHPRTLELFFGCPIQKFVLNSYPYSTNELLRQLRA-FTALKHLSL 532
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL L LQ L+ C +++D L+H+ GL NL LS + +T G
Sbjct: 533 VNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLCFLSLDQTK-VTDAG 591
Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + L L + +L L+IK D+ L+ ++
Sbjct: 592 MVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV---KDLTALAAMS 648
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L++L + + VT++ + +L LT L L G PV D AL + L L R L
Sbjct: 649 SLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVA----DGSHALQIISGLKLTRITL 704
Query: 241 ------SDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+D G SRLT L L+L D I D+G+ +L+ L LK L LS+TQV +GL
Sbjct: 705 PGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGL 764
Query: 294 RHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 351
L + L+ + L T + S G + L L+ L L + Q+ D + L + L
Sbjct: 765 PSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDNVVRKGLIRCSQLV 824
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L+L RITD G YL+ + L + + G G++ G+
Sbjct: 825 KLNLSRTRITDHGLKYLKQMR-LAQVNLDGTGVSLMGI 861
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 178/333 (53%), Gaps = 19/333 (5%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L ++ T GL L L+KL+ LN+ C+ +TDS ++ ++GL NL
Sbjct: 521 LRAFTALKHLSLVNSPLIT--DSGLCILSTLVKLQYLNLASCSKLTDSCLQHITGLKNLC 578
Query: 184 SLQISCSKVTDSGIA-YLKGLQK-LTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQL 240
L + +KVTD+G+ YL+ + L+ L+L VT L L +++ L L++ + ++
Sbjct: 579 FLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSIKQTKV 638
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV--GSSGLRHLSG 298
D + +++L++LNLD G+ + L +L L L L V GS L+ +SG
Sbjct: 639 KD--LTALAAMSSLQTLNLDGTGVTEASLEHLATHPALTSLTLVGIPVADGSHALQIISG 696
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF 356
L L I L ++D L L+ L+ L L+L D QITD G++ L++LT L L L
Sbjct: 697 L-KLTRITLPGRHSVTDSGLSFLSRLTLLSELDLTDYTQITDQGVSHLSTLTRLKKLSLS 755
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLE 415
++TD+G LR + L+ L + +T GV I L L +L L+ + + D +
Sbjct: 756 NTQVTDAGLPSLRCMQELQELCLDRTAVTSRGVADLITCLPHLQVLGLA-STQVGDNVVR 814
Query: 416 LISGL---TGLVSLNVSNSRITSAGLRHLKPLK 445
GL + LV LN+S +RIT GL++LK ++
Sbjct: 815 --KGLIRCSQLVKLNLSRTRITDHGLKYLKQMR 845
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 35/305 (11%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA 226
T+ ++ L T LK L + S +TDSG+ L L KL LNL C +T +CL ++
Sbjct: 514 TNELLRQLRAFTALKHLSLVNSPLITDSGLCILSTLVKLQYLNLASCSKLTDSCLQHITG 573
Query: 227 LGSLFYLNLNRCQLSDDGCEKF--SRLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLEL 283
L +L +L+L++ +++D G + S + L L+L+ + + L L T + L+ L +
Sbjct: 574 LKNLCFLSLDQTKVTDAGMVLYLQSVPSCLSQLSLNQTAVTETTLAVLPTSVPQLRLLSI 633
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
T+V L LA +SSL++LNLD +T+ L
Sbjct: 634 KQTKVKD--------------------------LTALAAMSSLQTLNLDGTGVTEASLEH 667
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLSSLTL 400
L + LT L L G + D G+ L+ L+ I G +TD+G+ + L+ L+
Sbjct: 668 LATHPALTSLTLVGIPVAD-GSHALQIISGLKLTRITLPGRHSVTDSGLSFLSRLTLLSE 726
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L+L+ +TD+ + +S LT L L++SN+++T AGL L+ ++ L+ L L+ VT+
Sbjct: 727 LDLTDYTQITDQGVSHLSTLTRLKKLSLSNTQVTDAGLPSLRCMQELQELCLDRTAVTSR 786
Query: 461 DIKRL 465
+ L
Sbjct: 787 GVADL 791
>gi|290996041|ref|XP_002680591.1| predicted protein [Naegleria gruberi]
gi|284094212|gb|EFC47847.1| predicted protein [Naegleria gruberi]
Length = 281
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 3/258 (1%)
Query: 143 RIHGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
RI G L +L L +L+ L+I + + I D ++ +S L L +L I + +++ G YL
Sbjct: 10 RIKEGEALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYL 68
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L++LT L ++ + A +S L L L +++ + D+G + S L L LN+
Sbjct: 69 SELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ 128
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
IGDEG + L L L +++ Q+G+ G ++LS L +L +N+S I D + L
Sbjct: 129 DNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYL 188
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L L L++ I D G+ L+ L LTHLD+ +I D G Y+ K + L I
Sbjct: 189 CELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYIN 248
Query: 381 GGGLTDAGVKHIKDLSSL 398
+ D G K++ +++ L
Sbjct: 249 NNYIGDEGTKYLSEMNQL 266
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 110/235 (46%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ LS L LK L I S + D G+ ++ L++LT L++ ++ LS L L +
Sbjct: 17 LNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQLTF 76
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L +++ + G + S L L L +D I DEG L+ L L L + D ++G G
Sbjct: 77 LIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGDEG 136
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++ L L + ++ I + + L+ L L LN+ QI D G L L L
Sbjct: 137 SKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMD 196
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LD+ I D G YL K L L+I + D GVK+I +L + L ++ N
Sbjct: 197 LDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 8/254 (3%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+K L KL + EG L+ LS L L L++ + D+G S L L +L++
Sbjct: 1 MKSLTKLKIRIKEG-----EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDI 55
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ GI + G L+ L L L + +G+ G +++S L L + + I D +
Sbjct: 56 RNNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKY 115
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ L L LN+ +I D G + L LT L + +I + GA YL K+L L I
Sbjct: 116 LSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNI 175
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ D G K++ +L L L++S CN + D+ ++ +SGL L L++S ++I G+
Sbjct: 176 SNNQIGDEGAKYLCELKQLMDLDIS--CNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGV 233
Query: 439 RHLKPLKNLRSLTL 452
+++ LK + L +
Sbjct: 234 KYISELKEIMYLYI 247
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 1/222 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +L+I+ N I++ K LS L L L I + + G Y+ L++LT+L ++
Sbjct: 47 LKQLTTLDIR-NNGISEYGAKYLSELKQLTFLIIDKNNIGAKGSKYISELKQLTILIIDK 105
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ LS L L YLN+ ++ D+G + L L L +++ IG+EG L+
Sbjct: 106 NNIDDEGAKYLSELKQLTYLNIQDNRIGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLS 165
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L +L L +S+ Q+G G ++L L L +++S I D ++ L+GL L L++
Sbjct: 166 ELKHLILLNISNNQIGDEGAKYLCELKQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISY 225
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+I D G+ ++ L + +L + I D G YL L+
Sbjct: 226 NKIRDEGVKYISELKEIMYLYINNNYIGDEGTKYLSEMNQLK 267
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 3/267 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
L HL + L+ L + I D G+ + L LT+L R NN I+ G K + L
Sbjct: 15 EALNHLSELKQLKKLHI-YDSYIGDEGVRFISELKQLTTLDIR-NNGISEYGAKYLSELK 72
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L +++ G + L +L L I N I D K LS L L L I ++
Sbjct: 73 QLTFLIIDKNNIGAKGSKYISELKQLTILIID-KNNIDDEGAKYLSELKQLTYLNIQDNR 131
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+ D G Y+ L++LT L + + LS L L LN++ Q+ D+G + L
Sbjct: 132 IGDEGSKYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCEL 191
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L L++ IGDEG+ L+GL L L++S ++ G++++S L + + ++
Sbjct: 192 KQLMDLDISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNY 251
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITD 338
I D + L+ ++ LK N D + D
Sbjct: 252 IGDEGTKYLSEMNQLKDHNKDFQYKED 278
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 6/196 (3%)
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E L +L+ L LK L + D+ +G G+R +S L L ++++ GIS+ + L+ L L
Sbjct: 15 EALNHLSELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNNGISEYGAKYLSELKQL 74
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L +D I G ++ L LT L + I D GA YL K L L I + D
Sbjct: 75 TFLIIDKNNIGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQDNRIGD 134
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G K+I +L LT L ++ N + ++ + +S L L+ LN+SN++I G ++L LK
Sbjct: 135 EGSKYIGELKQLTDLYINNN-QIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQ 193
Query: 447 LRSLTLESCKVTANDI 462
L L + SC NDI
Sbjct: 194 LMDLDI-SC----NDI 204
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 3/261 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + + S + D G+ + + L +LD IS+ G ++L L LT L
Sbjct: 21 SELKQLKKLHIYDSYIGDEGVRFISELKQLTTLDIRNN-GISEYGAKYLSELKQLTFLII 79
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+NN I A+G K + L L L +++ G L L +L LNI+ N I D
Sbjct: 80 DKNN-IGAKGSKYISELKQLTILIIDKNNIDDEGAKYLSELKQLTYLNIQ-DNRIGDEGS 137
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K + L L L I+ +++ + G YL L+ L LLN+ + L L L L
Sbjct: 138 KYIGELKQLTDLYINNNQIGNEGAKYLSELKHLILLNISNNQIGDEGAKYLCELKQLMDL 197
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+++ + D+G + S L L L++ I DEG+ ++ L + L +++ +G G
Sbjct: 198 DISCNDIGDEGIKYLSGLKQLTHLDISYNKIRDEGVKYISELKEIMYLYINNNYIGDEGT 257
Query: 294 RHLSGLTNLESINLSFTGISD 314
++LS + L+ N F D
Sbjct: 258 KYLSEMNQLKDHNKDFQYKED 278
>gi|149918767|ref|ZP_01907254.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
gi|149820368|gb|EDM79784.1| hypothetical protein PPSIR1_31833 [Plesiocystis pacifica SIR-1]
Length = 541
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 115/242 (47%), Gaps = 2/242 (0%)
Query: 165 CNC--ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
C+C D + L L L+ L++ S VT +G+ +L L L L GC + +
Sbjct: 294 CDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLDSEGFT 353
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+L+AL L L + L D E L +L L L G GD L L NL+ L+
Sbjct: 354 ALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVNLERLD 413
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L +T V GL HL+G+ L + L T ++ L L GLS+L+ L LD + D G+A
Sbjct: 414 LGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVA 473
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L L L L ITD G A+L +L L + +T GV+ + L L ++N
Sbjct: 474 HLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVN 533
Query: 403 LS 404
L+
Sbjct: 534 LA 535
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 25/311 (8%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------------- 188
H ++ + L+SL + +T+ + PL GL +L ++ S
Sbjct: 230 HNTMLRVAKAKSLQSLAV-IDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288
Query: 189 -------CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
C + D G+ L+ L+ L +L LE VT+A L L+ +L L L C L
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G + L L L + + D L L +L+ LEL G + L+ L N
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFGDRAAQELAPLVN 408
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
LE ++L T +SD L LAG+ L+ L L ++T GL L L+ L L+L +
Sbjct: 409 LERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVV 468
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D G A+L LR L + +TD GV H+ LS L LNL+ N +T + +E++S L
Sbjct: 469 DEGVAHLAKLGALRELRLDNTLITDVGVAHLAKLSDLERLNLA-NTVVTSEGVEVLSALP 527
Query: 422 GLVSLNVSNSR 432
L +N++ +R
Sbjct: 528 RLEVVNLAGTR 538
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 3/244 (1%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D GL L+ LQ L+ ++ GL HL L L+ R + + ++G A A L
Sbjct: 301 DRGLFMLRYLEGLQVLELERS-AVTSAGLVHLAENPALEDLTLRGCD-LDSEGFTALAAL 358
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L +L + + + G L L+ L L + + D + L+ L NL+ L + +
Sbjct: 359 PRLRRLIVGPASLLDGKAEGLGLLVSLRELELG-LDGFGDRAAQELAPLVNLERLDLGNT 417
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
V+D G+ +L G+ +L L L VT L+ L L +L L L+ + D+G ++
Sbjct: 418 AVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAK 477
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L L L LD+ I D G+ +L L +L+ L L++T V S G+ LS L LE +NL+ T
Sbjct: 478 LGALRELRLDNTLITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGT 537
Query: 311 GISD 314
D
Sbjct: 538 RARD 541
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 25/285 (8%)
Query: 98 GLEHL-------RGLSNLTSLSFRRNNAITA----------QGMKAFAGLINLVKLDLER 140
GL+HL +G SN TS + R+ I +G+ L L L+LER
Sbjct: 262 GLDHLHRIEWSGQGWSN-TSPQYLRDLPIDELICDCPRFGDRGLFMLRYLEGLQVLELER 320
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGI 197
GLV+L LE L ++ C+ ++ L+ L L+ L + + + D G+
Sbjct: 321 SAVTSAGLVHLAENPALEDLTLRGCDLDSEG-FTALAALPRLRRLIVGPASLLDGKAEGL 379
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L L++L L L+G AA L+ L +L L+L +SD+G E + + L L
Sbjct: 380 GLLVSLRELEL-GLDGFGDRAA--QELAPLVNLERLDLGNTAVSDEGLEHLAGMVRLREL 436
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + GL +L GL L+ LEL T V G+ HL+ L L + L T I+D +
Sbjct: 437 ELHHTRVTRHGLEHLQGLSALEILELDHTDVVDEGVAHLAKLGALRELRLDNTLITDVGV 496
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
LA LS L+ LNL +T G+ L++L L ++L G R D
Sbjct: 497 AHLAKLSDLERLNLANTVVTSEGVEVLSALPRLEVVNLAGTRARD 541
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 21/270 (7%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSRLT 252
+A K LQ L +++ TA SL L L +L+ R + S G ++ R
Sbjct: 236 VAKAKSLQSLAVID------TALTNYSLHPLKGLDHLH--RIEWSGQGWSNTSPQYLRDL 287
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
++ L D GD GL L L L+ LEL + V S+GL HL+ LE + L +
Sbjct: 288 PIDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDL 347
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITD---TGLAALTSLTGLT-HLDLFGARITDSGAAYL 368
LA L L+ L + + D GL L SL L LD FG D A L
Sbjct: 348 DSEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLDGFG----DRAAQEL 403
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
NL L++ ++D G++H+ + L L L + +T LE + GL+ L L +
Sbjct: 404 APLVNLERLDLGNTAVSDEGLEHLAGMVRLRELEL-HHTRVTRHGLEHLQGLSALEILEL 462
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++ + G+ HL L LR L L++ +T
Sbjct: 463 DHTDVVDEGVAHLAKLGALRELRLDNTLIT 492
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 135/345 (39%), Gaps = 54/345 (15%)
Query: 172 DMKPLSGLT-NLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ L+ T L +L+IS C +G+ A+ L++L L+++E VT A L L L
Sbjct: 112 DLHALAEATPRLTALRISGCQGAVHAGLSAFGARLRELELVDIELDAVTVARLSQLHGLD 171
Query: 229 SLFYLNLNRCQLSDDGCEKFSR-----LTNLESLNLDSC-------------------GI 264
+L L R + + +R L L+ DS +
Sbjct: 172 TLI---LTRVRAEAEALNPLARKISPSTVTLRELDKDSAVVELVTLLRDLHHLRLEGAWV 228
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS----------- 313
G ++ + +L+ L + DT + + L L GL +L I S G S
Sbjct: 229 GHNTMLRVAKAKSLQSLAVIDTALTNYSLHPLKGLDHLHRIEWSGQGWSNTSPQYLRDLP 288
Query: 314 ------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
D L L L L+ L L+ +T GL L L L L G +
Sbjct: 289 IDELICDCPRFGDRGLFMLRYLEGLQVLELERSAVTSAGLVHLAENPALEDLTLRGCDLD 348
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G L LR L + L D + + L SL L L + D+ + ++ L
Sbjct: 349 SEGFTALAALPRLRRLIVGPASLLDGKAEGLGLLVSLRELELGLD-GFGDRAAQELAPLV 407
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L L++ N+ ++ GL HL + LR L L +VT + ++ LQ
Sbjct: 408 NLERLDLGNTAVSDEGLEHLAGMVRLRELELHHTRVTRHGLEHLQ 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 44/193 (22%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+ L+ F D A Q+L P VN L +DL + V+D GL HL
Sbjct: 389 ELGLDGFGDRAAQELA----PLVN-------------LERLDLGNTAVSDEGLEHLAGMV 431
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L+ + +++ GLEHL+GLS L L + + G+ +L KL R
Sbjct: 432 RLRELELHHT-RVTRHGLEHLQGLSALEILELDHTDVVD-------EGVAHLAKLGALRE 483
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+ L ITD + L+ L++L+ L ++ + VT G+ L
Sbjct: 484 LRLDNTL-------------------ITDVGVAHLAKLSDLERLNLANTVVTSEGVEVLS 524
Query: 202 GLQKLTLLNLEGC 214
L +L ++NL G
Sbjct: 525 ALPRLEVVNLAGT 537
>gi|290973802|ref|XP_002669636.1| predicted protein [Naegleria gruberi]
gi|284083186|gb|EFC36892.1| predicted protein [Naegleria gruberi]
Length = 548
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 166/371 (44%), Gaps = 51/371 (13%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDMKPLSGLTNLK 183
K + I+ V+L E+C I LVNL L C N I + +K LS LTNLK
Sbjct: 91 KVLSLTIDGVELIEEQCGTISTKLVNLTQL--------DLCRNKIKPTVVKGLSSLTNLK 142
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + +++ + G ++ L LT L+L + LS+L +L LNL ++ D
Sbjct: 143 KLNLGHNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDA 202
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS------ 297
G E S LTNL LNL +G G+ +L GL L L+LS Q+G G+ +LS
Sbjct: 203 GAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLK 262
Query: 298 ------------------GLTNLES----------------INLSFTGISDGSLRKLAGL 323
GL NL INL I +L L
Sbjct: 263 KLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIGPNGAERLCEL 322
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
++L LNL + I +L L LT LDL RI D GA L K L L++ G
Sbjct: 323 TNLTQLNLRSNLIGAIKAESLCKLENLTQLDLGYNRIEDDGAQRLSKLKKLTQLDLSGNQ 382
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ G + + +L++LT L+L N N + + +S L L L ++++RI G ++L
Sbjct: 383 IGSIGAQSLSELTNLTHLDL--NGNGIEDGAQHLSKLKKLTRLGLNDNRIGDDGAKYLSE 440
Query: 444 LKNLRSLTLES 454
L L L+L++
Sbjct: 441 LNKLTHLSLDN 451
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 22/312 (7%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACL 221
KW + I S+++ + + SL I ++ + + L LT L+L + +
Sbjct: 77 KWTDFIERSNLE----MDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVV 132
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
LS+L +L LNL ++ +DG + S LT+L +L+L GIG G L+ L NL L
Sbjct: 133 KGLSSLTNLKKLNLGHNEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQL 192
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L + ++G +G H+S LTNL +NL T + ++ L GL L L+L QI G+
Sbjct: 193 NLGNNEIGDAGAEHISSLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGV 252
Query: 342 AALTSLTGLTHLDLFGARITDSG----------------AAYLRNFKNLRSLEICGGGLT 385
L+ L L L+L RIT G A +L KNL + +C +
Sbjct: 253 NNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQINLCLNQIG 312
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
G + + +L++LT LNL N K E + L L L++ +RI G + L LK
Sbjct: 313 PNGAERLCELTNLTQLNLRSNLIGAIKA-ESLCKLENLTQLDLGYNRIEDDGAQRLSKLK 371
Query: 446 NLRSLTLESCKV 457
L L L ++
Sbjct: 372 KLTQLDLSGNQI 383
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 10/240 (4%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFS-RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ + L ++ +L ++ C S +L NL L+L I + L+ L NLK L L
Sbjct: 89 MDKVLSLTIDGVELIEEQCGTISTKLVNLTQLDLCRNKIKPTVVKGLSSLTNLKKLNLGH 148
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G+ G +H+S LT+L +++L GI ++L+ L++L LNL +I D G ++
Sbjct: 149 NEIGNDGAKHVSSLTHLTALDLFDNGIGPNGAQRLSSLTNLTQLNLGNNEIGDAGAEHIS 208
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
SLT LT L+L ++ +G LR K L L++ G + GV ++ +L +L LNL
Sbjct: 209 SLTNLTQLNLRITKLGANGVKSLRGLKKLTELDLSGNQIGYEGVNNLSELKNLKKLNLGN 268
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N +T E + GL L L++ HL LKNL + L ++ N +RL
Sbjct: 269 N-RITGDGAERLCGLENLTELDLR--------AEHLSQLKNLTQINLCLNQIGPNGAERL 319
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 142/316 (44%), Gaps = 47/316 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L +++ D+G H+ +NL L+ ++ G++ LRGL LT L N
Sbjct: 187 TNLTQLNLGNNEIGDAGAEHISSLTNLTQLNLRIT-KLGANGVKSLRGLKKLTELDLSGN 245
Query: 117 -----------------------NAITAQGMKAFAGLINLVKLDL--------ERCTRIH 145
N IT G + GL NL +LDL + T+I+
Sbjct: 246 QIGYEGVNNLSELKNLKKLNLGNNRITGDGAERLCGLENLTELDLRAEHLSQLKNLTQIN 305
Query: 146 --------GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
G L L L LN++ N I + L L NL L + +++ D G
Sbjct: 306 LCLNQIGPNGAERLCELTNLTQLNLR-SNLIGAIKAESLCKLENLTQLDLGYNRIEDDGA 364
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L L+KLT L+L G + + SLS L +L +L+LN + +DG + S+L L L
Sbjct: 365 QRLSKLKKLTQLDLSGNQIGSIGAQSLSELTNLTHLDLNGNGI-EDGAQHLSKLKKLTRL 423
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-- 315
L+ IGD+G L+ L L L L + +G +G LS L N+ ++L I
Sbjct: 424 GLNDNRIGDDGAKYLSELNKLTHLSLDNNGIGDTGAECLSKLKNITYLSLDDNEIETAGK 483
Query: 316 -SLRKLA--GLSSLKS 328
LRKL GL S+++
Sbjct: 484 KHLRKLIRCGLCSIRT 499
>gi|296123881|ref|YP_003631659.1| serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
gi|296016221|gb|ADG69460.1| Serine/threonine protein kinase-related protein [Planctomyces
limnophilus DSM 3776]
Length = 1655
Score = 107 bits (267), Expect = 2e-20, Method: Composition-based stats.
Identities = 127/500 (25%), Positives = 195/500 (39%), Gaps = 98/500 (19%)
Query: 61 SVDLSGSDVTDSGLIHLKD------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SV L+G + + + KD C +L+ + F ISD L+ L L LT L
Sbjct: 1143 SVQLTGIEFRNKRDLDAKDFEVFSGCRDLEKVRLGFS-SISDAHLKPLENLPKLTHLELS 1201
Query: 115 RNNAITAQGMKAFAGLINLV--------------------KLDLERCTRIHG-GLVNLKG 153
+ +T ++ F L +L LDL TRI G L
Sbjct: 1202 QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKDNPFRNLDLGG-TRITGKALAAFTN 1260
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L S + + + I + D+ L L L + + + D G+ + L+ L L L+G
Sbjct: 1261 LSDLRSSRLAFTS-IKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKALRSLELQG 1319
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI-------GD 266
VT L L L ++L Q++ + E F + L + D+ G+ GD
Sbjct: 1320 SKVTNEVFFYLMKLPHLLSVDLRYTQVTPEAIESFRKQKPLCEVKCDA-GVLPRWEPNGD 1378
Query: 267 EGLVNLTGLCNLKCLELSD---------------------------TQVGSSGLRHLS-- 297
E + N L T + GL+ L+
Sbjct: 1379 ELVKNAKADRAAAAFVLKQGKYVWLDNAKDPLHGDPAILPPHLFKLTGISLEGLKTLTPR 1438
Query: 298 ------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G NL + L GI+D LR G +S+ L LD + +T GL+ + LT
Sbjct: 1439 DFEIFKGCQNLSDLQLLNMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLT 1498
Query: 352 -----------------------HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+L+L G RITD+ A + +NL + GLTD G
Sbjct: 1499 FLSVWATQADDKFIQSIASPDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTDEG 1558
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 447
++H+ +LT L L+ LTD + ++ L L L +SN++ + GL L L NL
Sbjct: 1559 IEHLASAENLTYLGLNHT-RLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNL 1617
Query: 448 RSLTLESCKVTANDIKRLQS 467
+ L L KVTA+ + + QS
Sbjct: 1618 KRLNLLETKVTADSVDKFQS 1637
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 13/223 (5%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ GL L D E I G NL L+ LN+ ITD ++ G T++ L
Sbjct: 1428 SLEGLKTLTPRDFE----IFKGCQNLS---DLQLLNMG----ITDEHLRAFEGTTSITKL 1476
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++ VT G++Y G ++LT L++ + S+++ YLNL +++D
Sbjct: 1477 KLDGQAVTSKGLSYFSGCKRLTFLSVWATQADDKFIQSIAS-PDYTYLNLGGTRITDASI 1535
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
F L NLE L+ G+ DEG+ +L NL L L+ T++ + + L LE +
Sbjct: 1536 AAFESLQNLEMATLNFTGLTDEGIEHLASAENLTYLGLNHTRLTDASAKVFLKLNQLEEL 1595
Query: 306 NLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
LS T SD G L + L +LK LNL ++T + SL
Sbjct: 1596 TLSNTQFSDQGLLLLVNALPNLKRLNLLETKVTADSVDKFQSL 1638
Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 4/202 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
E +G NL+ L N IT + ++AF G ++ KL L+ GL G +L
Sbjct: 1440 FEIFKGCQNLSDLQLL-NMGITDEHLRAFEGTTSITKLKLDGQAVTSKGLSYFSGCKRLT 1498
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ W D ++ ++ + L + +++TD+ IA + LQ L + L +T
Sbjct: 1499 FLSV-WATQADDKFIQSIAS-PDYTYLNLGGTRITDASIAAFESLQNLEMATLNFTGLTD 1556
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL-TGLCN 277
++ L++ +L YL LN +L+D + F +L LE L L + D+GL+ L L N
Sbjct: 1557 EGIEHLASAENLTYLGLNHTRLTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPN 1616
Query: 278 LKCLELSDTQVGSSGLRHLSGL 299
LK L L +T+V + + L
Sbjct: 1617 LKRLNLLETKVTADSVDKFQSL 1638
Score = 65.5 bits (158), Expect = 5e-08, Method: Composition-based stats.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 270 VNLTGL--CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
V LTG+ N + L+ D +V SG +LE + L F+ ISD L+ L L L
Sbjct: 1144 VQLTGIEFRNKRDLDAKDFEV-------FSGCRDLEKVRLGFSSISDAHLKPLENLPKLT 1196
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L Q AA+ LTHL+ + + D A L++ R+L++ G +T
Sbjct: 1197 HLELS--QCEKVTGAAIRKFKHLTHLEAWAVPVGDDDLAPLKD-NPFRNLDLGGTRITGK 1253
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
+ +LS L L+ ++ +K L + L L + N+ I G+R + LK L
Sbjct: 1254 ALAAFTNLSDLRSSRLAFT-SIKNKDLAALKDCHRLTFLALYNTGIGDEGVREICELKAL 1312
Query: 448 RSLTLESCKVTANDIKRLQSRDLPNLVS 475
RSL L+ KVT L LP+L+S
Sbjct: 1313 RSLELQGSKVTNEVFFYLMK--LPHLLS 1338
Score = 44.7 bits (104), Expect = 0.11, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+DK++ IAS + L +L G+ +TD+ + + NL+ NF ++D G+EHL
Sbjct: 1508 DDKFIQSIASPDYTYL--NLGGTRITDASIAAFESLQNLEMATLNF-TGLTDEGIEHLAS 1564
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIK 163
NLT L +T K F L L +L L GL+ L L L+ LN+
Sbjct: 1565 AENLTYLGLNHTR-LTDASAKVFLKLNQLEELTLSNTQFSDQGLLLLVNALPNLKRLNLL 1623
Query: 164 WCNCITDS 171
DS
Sbjct: 1624 ETKVTADS 1631
>gi|283778672|ref|YP_003369427.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
gi|283437125|gb|ADB15567.1| hypothetical protein Psta_0882 [Pirellula staleyi DSM 6068]
Length = 450
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 137/278 (49%), Gaps = 26/278 (9%)
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D G+ ++ L + L+LEG VT A L L+ + + L L +LS G + L +
Sbjct: 193 DEGVDHVVQLGNIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVD 252
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
LE L+L I D L+ L L S+ L FT ++
Sbjct: 253 LEYLSLKQLPIDDR------------------------DLQELPEFPKLMSLGLDFTEVT 288
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D L KL + L +L LDA ++TD G+ + ++ L L + ++ G ++L +
Sbjct: 289 DAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKISTLRSLFMPATQVKGPGFSHLMKLAS 348
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
LR L + G L D ++H+ L ++ +L L + N+TDK +E + G+T L +L +S + +
Sbjct: 349 LRYLSLKGVQLDDVALQHLVGLENIEILGLD-HTNVTDKQIEQLVGMTRLKTLWLSKTAV 407
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
T + L +++L+++ L +V+A+ +RL+ R+LP
Sbjct: 408 TDGAIESLSKIRSLQTVYLHGSEVSADGAERLR-RELP 444
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 4/237 (1%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
NI+W + +TD+ + L+ + +K L + +K++ G+A L L L L+L+ P+
Sbjct: 204 NIQWLSLEGSDVTDAVLPKLAKIPEIKRLFLGSTKLSGGGLATLAPLVDLEYLSLKQLPI 263
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
L L L L L+ +++D G K + L++L LD+ + DEG++ + +
Sbjct: 264 DDRDLQELPEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLDATRVTDEGMLEVAKIS 323
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ L + TQV G HL L +L ++L + D +L+ L GL +++ L LD +
Sbjct: 324 TLRSLFMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLVGLENIEILGLDHTNV 383
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
TD + L +T L L L +TD L ++L+++ + G ++ G + ++
Sbjct: 384 TDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAERLR 440
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 5/183 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D L L + L SL +F +++D GL L + L +L +T +GM A
Sbjct: 263 IDDRDLQELPEFPKLMSLGLDFT-EVTDAGLTKLPKFAMLDTLWLDATR-VTDEGMLEVA 320
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L + T++ G G +L L L L++K + D ++ L GL N++ L +
Sbjct: 321 KISTLRSLFMP-ATQVKGPGFSHLMKLASLRYLSLKGVQ-LDDVALQHLVGLENIEILGL 378
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD I L G+ +L L L VT ++SLS + SL + L+ ++S DG E+
Sbjct: 379 DHTNVTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLHGSEVSADGAER 438
Query: 248 FSR 250
R
Sbjct: 439 LRR 441
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L Q P ++D+ + + + L+S+ L ++VTD+GL L + L +L +
Sbjct: 253 LEYLSLKQLP-IDDRDLQEL-PEFPKLMSLGLDFTEVTDAGLTKLPKFAMLDTLWLD-AT 309
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D G+ + +S L SL F + G L +L L L+ L +L
Sbjct: 310 RVTDEGMLEVAKISTLRSL-FMPATQVKGPGFSHLMKLASLRYLSLKGVQLDDVALQHLV 368
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL +E L + N +TD ++ L G+T LK+L +S + VTD I L ++ L + L
Sbjct: 369 GLENIEILGLDHTN-VTDKQIEQLVGMTRLKTLWLSKTAVTDGAIESLSKIRSLQTVYLH 427
Query: 213 GCPVTA 218
G V+A
Sbjct: 428 GSEVSA 433
>gi|344170515|emb|CCA82933.1| leucine-rich-repeat type III effector protein (GALA5) [blood
disease bacterium R229]
Length = 533
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALAGNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L +LN+
Sbjct: 256 LATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 315
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ +G +G+ L L L + +G +G R L+ T+L ++++ GIS +
Sbjct: 316 ERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQA 375
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + ++D+GA L K L +L+
Sbjct: 376 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDA 435
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ TGL SL++ N+R+T AG+R
Sbjct: 436 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTGLASLDLRNNRVTEAGVR 494
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 495 ALLANRTLSSL 505
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 126/416 (30%), Positives = 197/416 (47%), Gaps = 23/416 (5%)
Query: 72 SGLIHLKDCSNLQSLD-FNFCIQISDGGLEHLRGL-SNLTSLSFRR-NNAITAQGMKAFA 128
+GL +K N +L+ +D LRGL ++LT L R ITA G+ +
Sbjct: 106 AGLAGVKRAGNYPALEKLTLIGPFTD---NDLRGLPASLTELDLSRCRGPITAAGIAHLS 162
Query: 129 GLINLVKLDLERCTRI--HGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LV+L++ R RI G L N L L+ N + I + L+G T L +
Sbjct: 163 HLP-LVRLNV-RDQRIGVEGARLLANHPTLTSLDVSNGR----IGPEGARALAGNTRLTT 216
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S +++ G L + LT L++ G AC +L+ L LN+NR ++
Sbjct: 217 LSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGAC--ALATNTKLTALNVNRNRIGV 274
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+G + + L SL++ IGDEG+ L L L + T+VG+ G+ L+ L
Sbjct: 275 EGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTL 334
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S+ + I D R LA +SL +L++++ I+ G AL + T LT L+L I D
Sbjct: 335 TSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGD 394
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+GA L SL + GL+DAG + +LT L+ N + D ++
Sbjct: 395 AGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNT-IRDAGARALAANRT 453
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +L+V ++ I +AG R L L SL L + +VT ++ L +R L +L VSF
Sbjct: 454 LTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRALLANRTLSSLGVSF 509
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 156/339 (46%), Gaps = 5/339 (1%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + L SLD + +I G L G + LT+LS N I A+G KA A L L
Sbjct: 184 LANHPTLTSLDVSNG-RIGPEGARALAGNTRLTTLSVSHNR-IGAEGAKALAASETLTSL 241
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D+ G L KL +LN+ N I K L+ L SL I + + D G
Sbjct: 242 DISENGIGDEGACALATNTKLTALNVN-RNRIGVEGAKALAAGEALTSLDIGGNDIGDEG 300
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
+ L +LT LN+E V A + +L+A +L L ++ + D G + T+L +
Sbjct: 301 VRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTT 360
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L+++S GI G L L L L +G +G + S T L S+++ G+SD
Sbjct: 361 LHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAG 420
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
LA +L +L+ I D G AL + LT LD+ I ++GA L L S
Sbjct: 421 ATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAANTGLAS 480
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L++ +T+AGV+ + L++ TL +L + N K E
Sbjct: 481 LDLRNNRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 169/367 (46%), Gaps = 35/367 (9%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTL------LNLEGCPVTA-- 218
TD+D++ L +L L +S C +T +GIA+L L + L + +EG + A
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANH 187
Query: 219 ---ACLD------------SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
LD +L+ L L+++ ++ +G + + L SL++ G
Sbjct: 188 PTLTSLDVSNGRIGPEGARALAGNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENG 247
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
IGDEG L L L ++ ++G G + L+ L S+++ I D +R LA
Sbjct: 248 IGDEGACALATNTKLTALNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAAN 307
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L +LN++ ++ G+ AL + LT L + I D+GA L +L +L I G
Sbjct: 308 ARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNG 367
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
++ AG + + ++LT LNL N + D + S T L+SL+V + ++ AG L
Sbjct: 368 ISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAA 426
Query: 444 LKNLRSL 450
K L +L
Sbjct: 427 SKTLTTL 433
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 27/287 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L + L +L+ N +I G + L LTSL N+
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTALNVNRN-RIGVEGAKALAAGEALTSLDIGGND 295
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G++A A L L++ER TR+ V L+
Sbjct: 296 -IGDEGVRALAANARLTTLNVER-TRVGADGVGA------------------------LA 329
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L SL+I + + D+G L LT L++E ++ A +L+A +L LNL
Sbjct: 330 ASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY 389
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D G + +S T L SL++ G+ D G L L L+ D + +G R L+
Sbjct: 390 NGIGDAGAQAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALA 449
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
L ++++ I + R LA + L SL+L ++T+ G+ AL
Sbjct: 450 ANRTLTTLDVRSNEIENAGARALAANTGLASLDLRNNRVTEAGVRAL 496
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 3/216 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + LT L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
++ ++ + G + T L SL+L + + + G+
Sbjct: 458 DVRSNEIENAGARALAANTGLASLDLRNNRVTEAGV 493
>gi|290999054|ref|XP_002682095.1| predicted protein [Naegleria gruberi]
gi|284095721|gb|EFC49351.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 13/306 (4%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESL 160
+ NLT L+ ++ G+K+ L +L+ L C +G G + L KLESL
Sbjct: 35 MKNLTHLTLG-SHFTNEDGLKSIGTLKHLIHL----CVDFNGIGLEGANYISQLEKLESL 89
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+I++ N I K +S + L L +S +++ G + +++LT L++ V
Sbjct: 90 SIRY-NYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVGDEE 148
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
+ LS L L L+++R ++ DG S++ L SL++++C I DE L+ + L
Sbjct: 149 VILLSELDQLTALSIDR--INPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQLTL 205
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L++ + + G++ LSGL+ L +N+S D + ++ + L L ++ QI+D G
Sbjct: 206 LDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQISDDG 265
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ +L L LT LD+ ITD G+ YL + L +LE+ L+ GVKH+ +++ LT
Sbjct: 266 MKSLGDLNELTILDISNNYITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMINMNQLTA 325
Query: 401 LNLSQN 406
L++ N
Sbjct: 326 LSIRHN 331
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 173/339 (51%), Gaps = 11/339 (3%)
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++ G V +K L L +L + N + +K + L +L L + + + G Y+
Sbjct: 27 KVIQGFVLMKNLTHL-TLGSHFTN---EDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQ 82
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
L+KL L++ + A +S + +L +LN++ ++ +G + S++ L L++
Sbjct: 83 LEKLESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDN 142
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
+GDE ++ L+ L L L + ++ G+ +S + L S++++ I D +L+
Sbjct: 143 KVGDEEVILLSELDQLTALSID--RINPDGINAISKMNKLVSLSINNCTILD-ECEELSK 199
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L L++ + I+ G+ L+ L+ LTHL++ D GA + K L L +
Sbjct: 200 MKQLTLLDIKSNGISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDC 259
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
++D G+K + DL+ LT+L++S N +TD+ ++ L L +L V+N+ ++ G++H+
Sbjct: 260 QISDDGMKSLGDLNELTILDISNNY-ITDEGSLYLTKLEKLTALEVNNNELSYQGVKHMI 318
Query: 443 PLKNLRSLTLESCKVT--ANDI-KRLQSRDLPNLVSFRP 478
+ L +L++ + T N++ + + L N +SFR
Sbjct: 319 NMNQLTALSIRHNQFTFVQNEVFSQFKQLKLLNGISFRE 357
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 4/248 (1%)
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
A + + +L +L L ++DG + L +L L +D GIG EG ++ L
Sbjct: 26 AKVIQGFVLMKNLTHLTLGSHFTNEDGLKSIGTLKHLIHLCVDFNGIGLEGANYISQLEK 85
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+ L + +G+ G + +S + L +N+S I + ++ + L L++ ++
Sbjct: 86 LESLSIRYNYIGAEGAKVISEMKTLTWLNVSSNRIGGEGAKAISQMKQLTYLDIGDNKVG 145
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D + L+ L LT L + RI G + L SL I + D + + +
Sbjct: 146 DEEVILLSELDQLTALSI--DRINPDGINAISKMNKLVSLSINNCTILDE-CEELSKMKQ 202
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LTLL++ N ++ K ++ +SGL+ L LN+S++ G + + +K L L + C++
Sbjct: 203 LTLLDIKSN-GISAKGVKQLSGLSQLTHLNISSNAFGDDGAKSISEIKQLTELFVNDCQI 261
Query: 458 TANDIKRL 465
+ + +K L
Sbjct: 262 SDDGMKSL 269
>gi|290993458|ref|XP_002679350.1| leucine rich repeat protein [Naegleria gruberi]
gi|284092966|gb|EFC46606.1| leucine rich repeat protein [Naegleria gruberi]
Length = 528
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 193/401 (48%), Gaps = 22/401 (5%)
Query: 86 LDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--E 139
+ FNF I + H + + + L + N I K F NL +LDL +
Sbjct: 82 IKFNFRISERREWKKLSQSHQKYIDRVECLHLKYNLLIFTIIQKRFY---NLRELDLSGQ 138
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
C R G+ LK L L LN+ C + +K + + NL SL IS + + + +
Sbjct: 139 NCYR--EGVKCLKSLKHLTVLNVSKTKCA--NGVKYIGMIENLTSLNISSVHLENQDVEH 194
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L+KLT L++ C +T D +S L SL +L++ L G S + +L++L++
Sbjct: 195 LSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNNDLGPLGLLPISSMESLQTLHI 254
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDG 315
+ I E +LT + NL L +S G+ GL+ +S + NL +++ + D
Sbjct: 255 NRIWIESESCESLTKMINLTELYISKNDFGNEGLKWISSMKNLRVLDIGNHSIIDALGDE 314
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ + +A L+ L LN+ +IT +G LTSLT LT L + G I D + + K L
Sbjct: 315 AAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLFIDGNEICDDFLDSISSLKELT 374
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L I GG ++ GVK I L LT+L++S+ + L+ + + L SL++S + +
Sbjct: 375 YLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVLKQLGLMKQLTSLHLSLTDLVE 434
Query: 436 A--GLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+ G ++ K L NL L + C + N IK + LPNL
Sbjct: 435 SVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISG--LPNL 473
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 161/345 (46%), Gaps = 31/345 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDG------------------ 97
+L S+++S + + + HL L SLD N C + D
Sbjct: 175 ENLTSLNISSVHLENQDVEHLSSLKKLTSLDVNNCNLTFEDADIISRLKSLTFLDIGNND 234
Query: 98 ----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
GL + + +L +L R I ++ ++ +INL +L + + + GL +
Sbjct: 235 LGPLGLLPISSMESLQTLHINR-IWIESESCESLTKMINLTELYISKNDFGNEGLKWISS 293
Query: 154 LMKLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ L L+I + + D K ++ LT L L IS ++T SG YL L KLT L
Sbjct: 294 MKNLRVLDIGNHSIIDALGDEAAKLVASLTQLTYLNISQHEITSSGAKYLTSLTKLTTLF 353
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGL 269
++G + LDS+S+L L YLN++ Q+S G + S+L L L++ C G E L
Sbjct: 354 IDGNEICDDFLDSISSLKELTYLNISGGQISVKGVKSISKLPRLTILDISECVGCCSEVL 413
Query: 270 VNLTGLCNLKCLELSDTQVGSS--GLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L + L L LS T + S G ++ L NL + ++F G+ D +++ ++GL +L
Sbjct: 414 KQLGLMKQLTSLHLSLTDLVESVEGFKYWHKNLINLTYLEMNFCGLDDNAIKWISGLPNL 473
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
K L+L + +TD + L + L +L LFG +T+ L +
Sbjct: 474 KYLDLQSNDLTDDCIQHLLGMKKLEYLSLFGNNMTEKKTKRLEKY 518
>gi|168701211|ref|ZP_02733488.1| leucine-rich repeat domain protein [Gemmata obscuriglobus UQM 2246]
Length = 702
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 193/431 (44%), Gaps = 36/431 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L S+ L + VTD+G+ HL L++LD + ++++D GL+ L GL NL +L+
Sbjct: 218 PKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR-LRVTDAGLKELAGLKNLRALTLLFT 276
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KW-CNCITDSDM 173
+T G++ FAG L L L + ++ L +L + +W + +
Sbjct: 277 Q-VTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRALAALAVEGRWPADAVAQ--- 331
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L+GL L+SL + +A L G KL ++L VT L L G L +
Sbjct: 332 --LAGLPELRSLHFQSDLLDGKVLAELSGASKLEAVHL--ATVTDDALAGLRRAGKLHTI 387
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSS 291
R E+ E ++LD G + GL LT NL L L +T+V +
Sbjct: 388 PQARA-------ERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRV-AG 439
Query: 292 GLRHLSGLTNLESINLSFTG-----ISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALT 345
G+ L+ L L ++ L G ++ +R+LA L +L+ L+L + G+A A+
Sbjct: 440 GIGALADLRKLSALTLPLYGGDDRAVTPAEMRRLAALDTLEELHLHG--VLVPGMARAVA 497
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
S+ LT L D+ K+LR+L G G+TD G + + L ++LS
Sbjct: 498 SIPNLTTLS---GTFQDTDLREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSD 554
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LTD ++ L L L +S + +T G++ L +K LR+L L KV + L
Sbjct: 555 TRRLTDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAAL 614
Query: 466 QSRDLPNLVSF 476
P LV+
Sbjct: 615 GRH--PGLVAL 623
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 140/310 (45%), Gaps = 43/310 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S S L +V L+ VTD L L+ L ++ + G + + L LS
Sbjct: 357 SGASKLEAVHLA--TVTDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLD----LS- 409
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----NCIT 169
+T G+K NL L L R TR+ GG+ L L KL +L + +T
Sbjct: 410 --GQPVTGAGLKELTVFRNLDTLVL-RNTRVAGGIGALADLRKLSALTLPLYGGDDRAVT 466
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
++M+ L+ L L+ L +L G+ + G A + +L+ L
Sbjct: 467 PAEMRRLAALDTLEEL-------------HLHGVL------VPGMARAVASIPNLTTLSG 507
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-V 288
F D +F L +L +L GI DEG ++ + L+C+ LSDT+ +
Sbjct: 508 TF---------QDTDLREFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRRL 558
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
+G R L+ L NL+ + LS TG++D ++ LAG+ +L++L L ++ G+AAL
Sbjct: 559 TDAGARDLAALPNLKHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHP 618
Query: 349 GLTHLDLFGA 358
GL LDL GA
Sbjct: 619 GLVALDLSGA 628
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 135/281 (48%), Gaps = 18/281 (6%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLT-SLSFRR 115
++ +DLSG VT +GL L NL +L N + G L LR LS LT L
Sbjct: 402 EVVHLDLSGQPVTGAGLKELTVFRNLDTLVLRNTRVAGGIGALADLRKLSALTLPLYGGD 461
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDM 173
+ A+T M+ A L L +L L HG LV + + + +L D+D+
Sbjct: 462 DRAVTPAEMRRLAALDTLEELHL------HGVLVPGMARAVASIPNLTT-LSGTFQDTDL 514
Query: 174 KPLSGLTNLKSLQISCSKVTDSG---IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ L +L++L + +TD G +A +K L+ ++L + +T A L+AL +L
Sbjct: 515 REFPALKHLRALMTGGAGITDEGAWDVARMKRLECVSLSDTRR--LTDAGARDLAALPNL 572
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+L L+R ++D+G + + + L +L L +G G+ L L L+LS G
Sbjct: 573 KHLCLSRTGVTDEGVQVLAGVKTLRTLWLSEIKVGPAGVAALGRHPGLVALDLSGAPRGE 632
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ L+G+T LE +NL+ + +L LA L L+ L+L
Sbjct: 633 A--EPLAGITTLEYLNLAGALTGERTLAALAKLPHLRVLHL 671
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 29/266 (10%)
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L +L+L+ ++ DD + + L+SL L+ + D G+ +L + L+ L+LS +V
Sbjct: 196 LTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSRLRVT 255
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
+GL+ L+GL NL ++ L FT ++ LR AG + L L L ++ +A + +
Sbjct: 256 DAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVVACRA 314
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L + G R A L LRSL L D V + +LS + L +
Sbjct: 315 LAALAVEG-RWPADAVAQLAGLPELRSLHFQ-SDLLDGKV--LAELSGASKLEAVHLATV 370
Query: 410 TDKTLELI-------------------SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TD L + +G +V L++S +T AGL+ L +NL +L
Sbjct: 371 TDDALAGLRRAGKLHTIPQARAERGRPAGPDEVVHLDLSGQPVTGAGLKELTVFRNLDTL 430
Query: 451 TLESCKVTAN-----DIKRLQSRDLP 471
L + +V D+++L + LP
Sbjct: 431 VLRNTRVAGGIGALADLRKLSALTLP 456
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
GLT+L +LSF+ + D L+ LA LKSL L+ Q+TD G+ L ++ GL LDL
Sbjct: 195 GLTHL---DLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHLAAVEGLEALDLSR 251
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
R+TD+G L KNLR+L + +T AG++ + LT L LS + +++
Sbjct: 252 LRVTDAGLKELAGLKNLRALTLLFTQVTGAGLRPFAG-AGLTHLALSGSKVKAADVADVV 310
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ L +L V R + + L L LRSL +S
Sbjct: 311 A-CRALAALAV-EGRWPADAVAQLAGLPELRSLHFQS 345
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 25/115 (21%)
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
GLTHLDL +R+ D L F L+SL + +TDAG+KH+
Sbjct: 195 GLTHLDLSFSRVGDDDLKLLAAFPKLKSLRLERTQVTDAGMKHL---------------- 238
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ + GL +L++S R+T AGL+ L LKNLR+LTL +VT ++
Sbjct: 239 ---------AAVEGLEALDLSRLRVTDAGLKELAGLKNLRALTLLFTQVTGAGLR 284
>gi|290979019|ref|XP_002672232.1| predicted protein [Naegleria gruberi]
gi|284085807|gb|EFC39488.1| predicted protein [Naegleria gruberi]
Length = 426
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 180/381 (47%), Gaps = 11/381 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFC---IQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S++ SG ++ L L FC + I+ +HL L +LT L N I +G
Sbjct: 43 SNIHPSGFKYICSLEQLTDLYMTFCYFRLPIA----KHLPSLKSLTYL-LITGNYIGVEG 97
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + L +L + G ++ GL +L LNI+ N IT K +S + L
Sbjct: 98 AKYIGEMKQLKQLHIANNNIGPEGAKHISGLEQLTILNIR-ANEITVDGAKFISEMKQLT 156
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L I + + D G ++ G+++LT L++ + +S + ++ LN+ + +D
Sbjct: 157 VLNIIGNDICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMLNITKLNIGFNSI-ND 215
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E F ++ L LN++S IG G+V ++ L L ++ + + H+S + N+
Sbjct: 216 CVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVI 275
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+++S I D ++ ++ ++ L LN+ + IT G+ + + LT+L + I
Sbjct: 276 KLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVK 335
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
GA + K+L L I + D G K I ++ LT LN+ N + D+ ++ +SG+ L
Sbjct: 336 GANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSN-EIGDEGVKALSGMKQL 394
Query: 424 VSLNVSNSRITSAGLRHLKPL 444
LN ++ I+ G +++ +
Sbjct: 395 TELNTVDNNISEEGENYIREM 415
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 145/320 (45%), Gaps = 15/320 (4%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +H+ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 117 IGPEGAKHISGLEQLTILNIRAN-EITVDGAKFISEMKQLTVLNIIGNDICDEGAKFISG 175
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N+ L I + + D + K +++LT LN+
Sbjct: 176 MKQLTNLDIS-VNNIGENGAKYVSEMLNITKLNIGFNSINDCVECFGK-MKQLTDLNVNS 233
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + +S+ L +L++ +S+ S++ N+ L++ IGD G+ +++
Sbjct: 234 SCIGLCGIVFISSFNQLTHLSIASNSISNYEASHISQMKNVIKLDISDNRIGDNGVQSIS 293
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L +S + G++++ + NL + ++ I +++ + L L++
Sbjct: 294 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLIIAHNNIGVKGANQISEMKHLAQLSIYN 353
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ D G ++ + LT L++ I D G L K L L +++ G +I+
Sbjct: 354 NAVGDEGAKFISEMEQLTFLNIGSNEIGDEGVKALSGMKQLTELNTVDNNISEEGENYIR 413
Query: 394 DLSSLTLLNLSQNCNLTDKT 413
++ NLTD T
Sbjct: 414 EM------------NLTDHT 421
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 135/287 (47%), Gaps = 11/287 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++ G+D+ D G + L +LD + I + G +++ + N+T L+
Sbjct: 150 SEMKQLTVLNIIGNDICDEGAKFISGMKQLTNLDISVN-NIGENGAKYVSEMLNITKLNI 208
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N+ ++ F + L L++ G+V + +L L+I N I++ +
Sbjct: 209 GFNS--INDCVECFGKMKQLTDLNVNSSCIGLCGIVFISSFNQLTHLSIA-SNSISNYEA 265
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+S + N+ L IS +++ D+G+ + + +LT LN+ +T + + + +L YL
Sbjct: 266 SHISQMKNVIKLDISDNRIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYL 325
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ + G + S + +L L++ + +GDEG ++ + L L + ++G G+
Sbjct: 326 IIAHNNIGVKGANQISEMKHLAQLSIYNNAVGDEGAKFISEMEQLTFLNIGSNEIGDEGV 385
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDT 339
+ LSG+ L +N IS+ G + ++ +NL D I D
Sbjct: 386 KALSGMKQLTELNTVDNNISE------EGENYIREMNLTDHTGIYDV 426
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 320 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L + LK LNL+ I +G + SL LT L + A +L + K+L L
Sbjct: 28 LDSMKELKKLNLENNSNIHPSGFKYICSLEQLTDLYMTFCYFRLPIAKHLPSLKSLTYLL 87
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I G + G K+I ++ L L+++ N N+ + + ISGL L LN+ + IT G
Sbjct: 88 ITGNYIGVEGAKYIGEMKQLKQLHIANN-NIGPEGAKHISGLEQLTILNIRANEITVDGA 146
Query: 439 RHLKPLKNLRSLTLESCKVTANDI 462
+ + +K L L + NDI
Sbjct: 147 KFISEMKQLTVLN-----IIGNDI 165
>gi|168054406|ref|XP_001779622.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668936|gb|EDQ55533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 627
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 126/436 (28%), Positives = 209/436 (47%), Gaps = 45/436 (10%)
Query: 18 RCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
R +T+V L A R C L+ L L G+ D + +A+ L ++DLS ++V+D G+
Sbjct: 145 RDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRNIDLSFTEVSDKGVSS 204
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGL-INLV 134
L NL+ L CI ++D GL LR G +L L + + ++++G+ A G+ + L
Sbjct: 205 LALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNVSSRGILALTGISLGLQ 264
Query: 135 KLDLERCTRIHG----------------------GLVNLK--GLMKLESLNIKWCNCITD 170
+L+L C +I G VNL G +L+ L++ C +TD
Sbjct: 265 ELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNLSLIGCKELKELSLSKCQGVTD 324
Query: 171 -SDMKPLSGLTNLKSLQISCSK-VTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
S + ++ T L+ L ++C + +TD + A + L L +E CP + + L+ +
Sbjct: 325 ASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLRMENCPSVTS--EGLTLI 382
Query: 228 GSLFY----LNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCL 281
G F L+L L+D+G + SR T + L L C I + GL +++ C NL+
Sbjct: 383 GRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNAGLASISSTCKNLREF 442
Query: 282 E-LSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 337
+ + G+ ++ G L+ +NLS+ I+D SL LA L L L L A QIT
Sbjct: 443 DCYRSVGISDDGVAAIARGCDRLKVVNLSYCASITDASLHSLALLRDLVQLELRACSQIT 502
Query: 338 DTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD 394
G++ + S L LD+ R + D G L R +NLR + + LTD G+ + +
Sbjct: 503 SVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGCRNLRQINLSYTALTDLGMTAVAN 562
Query: 395 LSSLTLLNLSQNCNLT 410
+S + + L N+T
Sbjct: 563 MSCIQDMKLVHMKNVT 578
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 227/475 (47%), Gaps = 47/475 (9%)
Query: 44 VNDKWMDVIAS-QGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V D+ + +A S LLS+ L + +G+ L +CS+LQ +D C QI D +
Sbjct: 70 VTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVTHCTQIGDAEVIV 129
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLES 159
L L +L L +T G+ A L L L+ C+ I G+ N+ G +L +
Sbjct: 130 LSKLKHLQKLKLNSCRDVTDVGLSALRRCTELRILGLKYCSGIGDSGIQNVATGCPQLRN 189
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEGCP-V 216
+++ + ++D + L+ L NL+ L ISC VTD G++ L+ G L L++ C V
Sbjct: 190 IDLSFTE-VSDKGVSSLALLKNLECLSIISCINVTDKGLSCLRSGCMSLQKLDVAKCSNV 248
Query: 217 TAACLDSLSALG-SLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
++ + +L+ + L LNL+ C ++SD F +L L+ + L+ C IG L +L G
Sbjct: 249 SSRGILALTGISLGLQELNLSYCKKISDVLFASFQKLKTLQVVKLNGCAIGRVNL-SLIG 307
Query: 275 LCNLKCLELSDTQ--VGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAG--------- 322
LK L LS Q +S + ++ T L+ ++L+ I+D +L +A
Sbjct: 308 CKELKELSLSKCQGVTDASVVGVVTACTGLQKLDLTCCRDITDVALEAIAANCKGLLSLR 367
Query: 323 ------------------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FGARITDS 363
+ L+ L+L + D GL +++ T + L L + IT++
Sbjct: 368 MENCPSVTSEGLTLIGRNFAHLEELDLTDSNLNDNGLKSISRCTEMRLLKLGYCMDITNA 427
Query: 364 GAAYLRNF-KNLRSLEICGG-GLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGL 420
G A + + KNLR + G++D GV I + L ++NLS ++TD +L ++ L
Sbjct: 428 GLASISSTCKNLREFDCYRSVGISDDGVAAIARGCDRLKVVNLSYCASITDASLHSLALL 487
Query: 421 TGLVSLNV-SNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
LV L + + S+ITS G+ ++ K+LR L ++ C+ + SR NL
Sbjct: 488 RDLVQLELRACSQITSVGISYIGASCKHLRELDIKRCRFVGDPGVLALSRGCRNL 542
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 173/338 (51%), Gaps = 26/338 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL---NLE 212
++E L++ C +TD + ++ TN + L I + GIA +K L + + L ++
Sbjct: 58 QVEHLDLSSCVEVTDQCLATVAKFTNSRLLSIKLIRTKGFGIAGVKSLVECSSLQDVDVT 117
Query: 213 GC-PVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGL 269
C + A + LS L L L LN C+ ++D G R T L L L C GIGD G+
Sbjct: 118 HCTQIGDAEVIVLSKLKHLQKLKLNSCRDVTDVGLSALRRCTELRILGLKYCSGIGDSGI 177
Query: 270 VNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN-LSFTGISDGSLRKL-AGLSSL 326
N+ TG L+ ++LS T+V G+ L+ L NLE ++ +S ++D L L +G SL
Sbjct: 178 QNVATGCPQLRNIDLSFTEVSDKGVSSLALLKNLECLSIISCINVTDKGLSCLRSGCMSL 237
Query: 327 KSLNL-DARQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYLRNFKNLRSLEI--CG 381
+ L++ ++ G+ ALT ++ GL L+L + +I+D A + K L+ +++ C
Sbjct: 238 QKLDVAKCSNVSSRGILALTGISLGLQELNLSYCKKISDVLFASFQKLKTLQVVKLNGCA 297
Query: 382 GG---LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSA 436
G L+ G K +K+LS LS+ +TD ++ +++ TGL L+++ R IT
Sbjct: 298 IGRVNLSLIGCKELKELS------LSKCQGVTDASVVGVVTACTGLQKLDLTCCRDITDV 351
Query: 437 GLRHLKP-LKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L + K L SL +E+C ++ L R+ +L
Sbjct: 352 ALEAIAANCKGLLSLRMENCPSVTSEGLTLIGRNFAHL 389
>gi|46446627|ref|YP_007992.1| hypothetical protein pc0993 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400268|emb|CAF23717.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 478
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 7/228 (3%)
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 293
N+ L+D NL+ L ++C + D+GL +L L L+ L L +V +GL
Sbjct: 234 NQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGL 293
Query: 294 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLT 351
HL+ L L+ ++LSF I+D L L L++L+ L L +T GLA LT L L
Sbjct: 294 AHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQ 353
Query: 352 HLDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+LDL + +TD G A+LR L+ L++ LTDAG+ H+ L +LT L L L
Sbjct: 354 YLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKL 413
Query: 410 TDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCK 456
TD L + L L LN+S+ R +T AGL HL PL L+ L L C+
Sbjct: 414 TDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCR 461
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 11/237 (4%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL 77
LT+ A ++C L+ L + D + +AS ++L + L G D VTD+GL HL
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASL-TALQHLGLRGCDKVTDAGLAHL 296
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
LQ LD +FC I+D GL HL L+ L L ++ +T G+ L L LD
Sbjct: 297 TSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLD 356
Query: 138 LERCTRI-HGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVT 193
L + GL +L+ L+ L+ L++ C +TD + + PL LT+LK I C K+T
Sbjct: 357 LSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLK--LIWCHKLT 414
Query: 194 DSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
D+G+A+L+ L L LNL C +T A L L L +L YLNL+ C +L+D G F
Sbjct: 415 DAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASF 471
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 123/235 (52%), Gaps = 8/235 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT 273
+T A +L +L L CQ L+DDG + LT L+ L L C + D GL +LT
Sbjct: 238 LTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVTDAGLAHLT 297
Query: 274 GLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
L L+ L+LS + + +GL HL+ LT L+ + L ++ L L L +L+ L+L
Sbjct: 298 SLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPLKALQYLDL 357
Query: 332 DAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLE-ICGGGLTDAG 388
+TD GLA L L L HLDL +TD+G A+L L L+ I LTDAG
Sbjct: 358 SYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAHLTPLVALTHLKLIWCHKLTDAG 417
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLK 442
+ H++ L +L LNLS NLTD L + LT L LN+S+ R +T GL K
Sbjct: 418 LAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 133/267 (49%), Gaps = 29/267 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI- 144
L F+ ++D L+ NL L+F A+T G+ A L L L L C ++
Sbjct: 230 LHFSNQTYLTDAHFSALKECKNLKILTFETCQALTDDGLAHLASLTALQHLGLRGCDKVT 289
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGL 203
GL +L L L+ L++ +C ITD+ + L+ LT L+ L + C +T +G+A+L L
Sbjct: 290 DAGLAHLTSLRALQYLDLSFCRNITDAGLAHLTPLTALQRLLLKKCENLTGAGLAHLTPL 349
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC- 262
+ L L+L ++ N L+DDG L L+ L+L +C
Sbjct: 350 KALQYLDLS------------------YWDN-----LTDDGLAHLRPLVALQHLDLANCY 386
Query: 263 GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 320
+ D GL +LT L L L+L ++ +GL HL L L+ +NLS ++D L L
Sbjct: 387 ELTDAGLAHLTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHL 446
Query: 321 AGLSSLKSLNL-DARQITDTGLAALTS 346
L++L+ LNL D R++TDTGLA+ +
Sbjct: 447 IPLTALQYLNLSDCRKLTDTGLASFKA 473
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T +GL HL LQ LD ++ ++D GL HLR L L L +T G+
Sbjct: 336 ENLTGAGLAHLTPLKALQYLDLSYWDNLTDDGLAHLRPLVALQHLDLANCYELTDAGLAH 395
Query: 127 FAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L+ L L L C ++ GL +L+ L+ L+ LN+ C +TD+ + L LT L+ L
Sbjct: 396 LTPLVALTHLKLIWCHKLTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYL 455
Query: 186 QIS-CSKVTDSGIAYLKG 202
+S C K+TD+G+A K
Sbjct: 456 NLSDCRKLTDTGLASFKA 473
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL HL+ L+ L+ + C ++D GL HL L+ L L+ +T G+ +F
Sbjct: 413 LTDAGLAHLRPLVALKHLNLSSCRNLTDAGLAHLIPLTALQYLNLSDCRKLTDTGLASFK 472
Query: 129 GLI 131
I
Sbjct: 473 ASI 475
>gi|325106627|ref|YP_004267695.1| hypothetical protein Plabr_0042 [Planctomyces brasiliensis DSM
5305]
gi|324966895|gb|ADY57673.1| leucine-rich repeat-containing protein [Planctomyces brasiliensis
DSM 5305]
Length = 526
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 5/281 (1%)
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++W D P NL+ L ++ +A + + L L + C + L
Sbjct: 34 VRWDQSPEDFPALP----ENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFDTL 89
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ + L SL L+L+ L D G EK S+L L + + + D GL + LK +
Sbjct: 90 ELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSI 149
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+L+ ++ +GL HL GL +L +NL + ++ +L+ L L L+ L+L T GL
Sbjct: 150 DLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGL 209
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ LT L L L G RI D G L F L SL++ G ++D +K + L L L
Sbjct: 210 SFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRL 269
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ ++D+ L+L++ ++ L++L+V + +T +G++ L+
Sbjct: 270 YVP-GTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 1/283 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S + S + + L L+L CP + L +L L C + D
Sbjct: 28 ALDLSAVRWDQSPEDFPALPENLQELDLTNCPCGSKILAQPEFQETLLKLKCQNCDIDFD 87
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E +L +L+ L+L + D G+ L+ L L+ ++ T+V +GLR++ L+
Sbjct: 88 TLELIGQLRSLQELDLSGTSLDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLK 147
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
SI+L+ +S+ L L GL SL+ +NL + L L L L LDL T
Sbjct: 148 SIDLNQNKLSEAGLCHLEGLVSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHH 207
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G ++L F+ LRSL++ G + D G+ + L L+LS ++D+ ++ ++ L L
Sbjct: 208 GLSFLTYFRRLRSLKLGGNRIEDDGLFPLLQFPRLESLDLS-GTPISDQAMKTLAQLPRL 266
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L V + ++ GL+ L + L +L + VT + +++L+
Sbjct: 267 KRLYVPGTAVSDEGLQLLTSVSTLIALDVRKTAVTPSGVQQLE 309
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 13/313 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D M+ LS L L++ I+ ++VTD+G+ Y+K + L ++L ++ A L L L
Sbjct: 108 LDDIGMEKLSKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQNKLSEAGLCHLEGL 167
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
SL +NL R ++ + RL LE L+L + GL LT L+ L+L +
Sbjct: 168 VSLREVNLRRSSVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLGGNR 227
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ GL L LES++LS T ISD +++ LA L LK L + ++D GL LTS+
Sbjct: 228 IEDDGLFPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSV 287
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--- 404
+ L LD+ +T SG L ++ L + V +D+ + +L+
Sbjct: 288 STLIALDVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSR 347
Query: 405 ----------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
++ + + + L SL ++ + L+ LK + L+SL L+
Sbjct: 348 SGDVIACQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQ 407
Query: 455 CKVTANDIKRLQS 467
C + L+S
Sbjct: 408 CTFPPEALSVLKS 420
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 176/399 (44%), Gaps = 17/399 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L + ++ + VTD+GL ++K L+S+D N ++S+ GL HL GL +L ++
Sbjct: 117 SKLEQLRTFAIAKTRVTDNGLRYVKAFRFLKSIDLNQN-KLSEAGLCHLEGLVSLREVNL 175
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
RR+ ++ +K L+ L KLDL H GL L +L SL + N I D +
Sbjct: 176 RRS-SVNGAALKWLQRLVLLEKLDLRNTNFTHHGLSFLTYFRRLRSLKLG-GNRIEDDGL 233
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL L+SL +S + ++D + L L +L L + G V+ L L+++ +L L
Sbjct: 234 FPLLQFPRLESLDLSGTPISDQAMKTLAQLPRLKRLYVPGTAVSDEGLQLLTSVSTLIAL 293
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL-----CNL---------K 279
++ + ++ G ++ + + + D+ + ++ + C+L
Sbjct: 294 DVRKTAVTPSGVQQLEQHSPGLKIKSDAADLPSSHVIRSRDVLQMHGCHLTLSRSGDVIA 353
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
C D L ++L+S+ L+ + L+ L +S L+SL L
Sbjct: 354 CQAGEDASPPIHWFSALESFSSLKSLELNRLALDGEQLQFLKNMSQLQSLALKQCTFPPE 413
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+ L SL L LDL ++D L +L +L + G+T G++ + L
Sbjct: 414 ALSVLKSLNRLAWLDLRDTPVSDESLQALGELPSLSNLCLSRTGVTATGLESLSSAPLLR 473
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
L + + + D + + L L++ + IT G
Sbjct: 474 DLVIKECGQIGDPAVLALEKFKNLKHLDIRGTNITEQGF 512
>gi|290998898|ref|XP_002682017.1| predicted protein [Naegleria gruberi]
gi|284095643|gb|EFC49273.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 2/253 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I K +S + L SL IS +++ G+ ++ +++LT L++
Sbjct: 154 MTQLTSLDIS-VNRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISD 212
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ +S + L L+++ ++ +G + S + L SLN+ IG EG+ ++
Sbjct: 213 NQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFIS 272
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L++SD Q+G G +++S +T L S+++S I D + ++ + L SL++
Sbjct: 273 EMKQLTSLDISDNQIGL-GAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICD 331
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G ++ +T LT L + RI GA ++ K L SL+I G + D GVK I
Sbjct: 332 NQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFIS 391
Query: 394 DLSSLTLLNLSQN 406
++ LT LN+S N
Sbjct: 392 EMKQLTSLNISVN 404
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 140/277 (50%), Gaps = 24/277 (8%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
++ +++LT LN+ + +S + L L+++ ++ +G + S + L SL+
Sbjct: 126 FISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLD 185
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ IG EG+ ++ + L L++SD Q+G G +++S +T L S+++S I +
Sbjct: 186 ISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAK 245
Query: 319 KLAGLSSLKSLNL--------------DARQIT-------DTGLAA--LTSLTGLTHLDL 355
++ + L SLN+ + +Q+T GL A ++ +T LT LD+
Sbjct: 246 FISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISDNQIGLGAKYISEMTQLTSLDI 305
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
RI D GA ++ K L SL+IC + G K I +++ LT L ++ N + + +
Sbjct: 306 SVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSN-RIGVEGAK 364
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L SL++S +RI G++ + +K L SL +
Sbjct: 365 FISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNI 401
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 5/228 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKF-SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ S+ L ++R L KF S + L SLN+ IG EG ++ + L L++S
Sbjct: 105 MNSIVNLKVSRRLLDSLEQPKFISEMKQLTSLNISDNQIGLEGAKYISEMTQLTSLDISV 164
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G + +S + L S+++S I ++ ++ + L SL++ QI G ++
Sbjct: 165 NRIGVEGAKFISEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDNQIGLEGSKYIS 224
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+T LT LD+ RI GA ++ K L SL I + GVK I ++ LT L++S
Sbjct: 225 EMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNISVNRIGVEGVKFISEMKQLTSLDISD 284
Query: 406 N-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
N L K IS +T L SL++S +RI G + + +K L SL +
Sbjct: 285 NQIGLGAK---YISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDI 329
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 135/269 (50%), Gaps = 5/269 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNL 151
QI G +++ ++ LTSL N I +G K + + L LD+ RI G+ +
Sbjct: 142 QIGLEGAKYISEMTQLTSLDISVNR-IGVEGAKFISEMKQLTSLDIS-VNRIGVEGVKFI 199
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SL+I N I K +S +T L SL IS +++ G ++ +++LT LN+
Sbjct: 200 SEMKQLTSLDIS-DNQIGLEGSKYISEMTQLTSLDISVNRIGVEGAKFISEMKQLTSLNI 258
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ + +S + L L+++ Q+ G + S +T L SL++ IGDEG
Sbjct: 259 SVNRIGVEGVKFISEMKQLTSLDISDNQIGL-GAKYISEMTQLTSLDISVNRIGDEGAKF 317
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L++ D Q+G G + +S +T L S+ ++ I + ++ + L SL++
Sbjct: 318 ISEMKQLTSLDICDNQIGVEGAKFISEMTQLTSLVITSNRIGVEGAKFISEMKQLTSLDI 377
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARI 360
+I D G+ ++ + LT L++ RI
Sbjct: 378 SGNRIGDEGVKFISEMKQLTSLNISVNRI 406
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 118/241 (48%), Gaps = 14/241 (5%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S + + G+ + + L SLD + QI G +++ ++ LTSL
Sbjct: 176 SEMKQLTSLDISVNRIGVEGVKFISEMKQLTSLDISDN-QIGLEGSKYISEMTQLTSLDI 234
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSD 172
N I +G K + + L L++ RI G+ + + +L SL+I +D+
Sbjct: 235 SVNR-IGVEGAKFISEMKQLTSLNIS-VNRIGVEGVKFISEMKQLTSLDI------SDNQ 286
Query: 173 M----KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+ K +S +T L SL IS +++ D G ++ +++LT L++ + +S +
Sbjct: 287 IGLGAKYISEMTQLTSLDISVNRIGDEGAKFISEMKQLTSLDICDNQIGVEGAKFISEMT 346
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L L + ++ +G + S + L SL++ IGDEG+ ++ + L L +S ++
Sbjct: 347 QLTSLVITSNRIGVEGAKFISEMKQLTSLDISGNRIGDEGVKFISEMKQLTSLNISVNRI 406
Query: 289 G 289
G
Sbjct: 407 G 407
>gi|290972233|ref|XP_002668860.1| predicted protein [Naegleria gruberi]
gi|284082393|gb|EFC36116.1| predicted protein [Naegleria gruberi]
Length = 296
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 151/295 (51%), Gaps = 4/295 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L +L + + + + G Y+ L ++ L++ G + + + L L + C
Sbjct: 1 MKQLTNLNVRHNDIDEEGAKYISELMNVSTLDISGNSINKRGAKYIGEMKQLTDLGMYCC 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ +G + S L L L+++ IGDEG + + L L + D ++GS G++++
Sbjct: 61 SIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGSEGVKYIGQ 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L NL + +S I D + ++ ++ L L++ + IT G+ ++ + L L +
Sbjct: 121 LKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I GA ++ K L SLE+ + G K++ ++ LT L +S+N + DK ++ +S
Sbjct: 181 NIDSMGAKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKN-EIGDKGVQFLS 238
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
G+ L SL+++ ++I+ G +++ +KNL L++ +++ + I+RL R++ L
Sbjct: 239 GMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERL--REMKQL 291
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 153/307 (49%), Gaps = 19/307 (6%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG------LMKLE 158
+ LT+L+ R N+ I +G K + L+N+ LD I G +N +G + +L
Sbjct: 1 MKQLTNLNVRHND-IDEEGAKYISELMNVSTLD------ISGNSINKRGAKYIGEMKQLT 53
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + +C I K +S L L L I+ + + D G Y+ +++LT L++ + +
Sbjct: 54 DLGM-YCCSIGVEGTKYISSLNQLTHLSININNIGDEGAKYIGQIKQLTDLSICDNKIGS 112
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ + L +L L ++ ++ D+G + S + L L++ S I G+ ++ + +L
Sbjct: 113 EGVKYIGQLKNLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHL 172
Query: 279 KCLELSDTQVGSSGLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L +SD + S G +H+S LT+LE N I + L+ + L +L + +I
Sbjct: 173 IDLMISDNNIDSMGAKHISQMKLTSLEVYN---NTIDVEGAKYLSEMEQLTNLEISKNEI 229
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
D G+ L+ + LT LD+ +I+D GA Y+ KNL L + +++ ++ ++++
Sbjct: 230 GDKGVQFLSGMKQLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMK 289
Query: 397 SLTLLNL 403
LT L++
Sbjct: 290 QLTYLDI 296
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 137/295 (46%), Gaps = 28/295 (9%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++D+SG+ + G ++ + L L +C I G +++ L+ LT LS NN I
Sbjct: 30 TLDISGNSINKRGAKYIGEMKQLTDLGM-YCCSIGVEGTKYISSLNQLTHLSININN-IG 87
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G K + L DL C N I +K + L
Sbjct: 88 DEGAKYIGQIKQLT--DLSICD-----------------------NKIGSEGVKYIGQLK 122
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL L +SC+++ D+G ++ + +LT L++ +T + +S + L L ++ +
Sbjct: 123 NLLKLYVSCNEIGDNGAQFISEMNQLTKLDISSVNITPIGIKYISKMEHLIDLMISDNNI 182
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
G + S++ L SL + + I EG L+ + L LE+S ++G G++ LSG+
Sbjct: 183 DSMGAKHISQMK-LTSLEVYNNTIDVEGAKYLSEMEQLTNLEISKNEIGDKGVQFLSGMK 241
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L S++++ ISD + + + +L L++ +I++ + L + LT+LD+
Sbjct: 242 QLTSLDINENKISDVGAKYILEMKNLIDLSVFDNEISEDIIERLREMKQLTYLDI 296
>gi|87309359|ref|ZP_01091495.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
gi|87287998|gb|EAQ79896.1| hypothetical protein DSM3645_22189 [Blastopirellula marina DSM
3645]
Length = 351
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 128/290 (44%), Gaps = 25/290 (8%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD D + L L+ L + +TD + L L KL L++ G +T L SL
Sbjct: 63 TDVDFRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLG--- 119
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+LT LE L I D L L L LK L L DT
Sbjct: 120 ---------------------QLTELERLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDA 158
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
+ GL HL +L+ + L T D L L +L L L +T +G+A L +
Sbjct: 159 SAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFPALAKLRLRGSDVTGSGMAELAKIG 218
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L LD+ ++ D+GAA + L L + +TDA + + L++L LNL N +
Sbjct: 219 SLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDAN-D 277
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
LTD L L++ + L L++ ++ +T AG+ L K+L +L + KVT
Sbjct: 278 LTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVT 327
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 4/265 (1%)
Query: 127 FAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F GL + L KL L+ L L KL+SL+++ + IT ++ L LT L+
Sbjct: 67 FRGLGEAVTLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVS-ITGEALQSLGQLTELE 125
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L + D+ +A L L KL +L L+ +A L+ L L L L D+
Sbjct: 126 RLLFRGQPIRDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDE 185
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
++ L L L + G+ L + +L+ L++S+T+V +G ++ L L
Sbjct: 186 ELAVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLT 245
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NL T ++D SL LA L++L+ LNLDA +TD LA L ++ L L L +TD+
Sbjct: 246 DLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDA 305
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAG 388
G L K+L +L + +TD G
Sbjct: 306 GILELAKSKSLETLIVTRTKVTDDG 330
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 2/250 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+L L+L ++D+ + + LT L+SL++ I E L +L L L+ L +
Sbjct: 75 TLRKLSLQDVGMTDESASELAPLTKLQSLDMRGVSITGEALQSLGQLTELERLLFRGQPI 134
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
+ L L+ LT L+ + L T S G L L LK L L D LA LT
Sbjct: 135 RDADLAQLAPLTKLKVLGLDDTDASAGGLEHLQNAHDLKELYLFNTPTVDEELAVLTKFP 194
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L L G+ +T SG A L +L L++ + DAG I L LT LNL +
Sbjct: 195 ALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSETKVDDAGAAEIAKLPKLTDLNLWK-TK 253
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QS 467
+TD +L ++ LT L LN+ + +T A L L + NL+ L L S VT I L +S
Sbjct: 254 VTDASLPDLAKLTTLERLNLDANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKS 313
Query: 468 RDLPNLVSFR 477
+ L L+ R
Sbjct: 314 KSLETLIVTR 323
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 27/227 (11%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
G + D+ L L + L+ L + S GGLEHL+ +L L + N + +
Sbjct: 131 GQPIRDADLAQLAPLTKLKVLGLDDT-DASAGGLEHLQNAHDLKEL-YLFNTPTVDEELA 188
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L KL R+ G + +T S M L+ + +L+ L
Sbjct: 189 VLTKFPALAKL------RLRG-------------------SDVTGSGMAELAKIGSLEDL 223
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S +KV D+G A + L KLT LNL VT A L L+ L +L LNL+ L+D
Sbjct: 224 DVSETKVDDAGAAEIAKLPKLTDLNLWKTKVTDASLPDLAKLTTLERLNLDANDLTDANL 283
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
+ + NL+ L+L S + D G++ L +L+ L ++ T+V G
Sbjct: 284 ALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVTRTKVTDDG 330
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L++L L P V+++ + ++ +L + L GSDVT SG+ L +L+ LD +
Sbjct: 172 LKELYLFNTPTVDEEL--AVLTKFPALAKLRLRGSDVTGSGMAELAKIGSLEDLDVSET- 228
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D G + L LT L+ + A L +L
Sbjct: 229 KVDDAGAAEIAKLPKLTDLNLWKTKVTDA-------------------------SLPDLA 263
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L LE LN+ N +TD+++ L+ + NLK L + + VTD+GI L + L L +
Sbjct: 264 KLTTLERLNLD-ANDLTDANLALLAAMPNLKWLHLGSTSVTDAGILELAKSKSLETLIVT 322
Query: 213 GCPVT 217
VT
Sbjct: 323 RTKVT 327
>gi|290985429|ref|XP_002675428.1| predicted protein [Naegleria gruberi]
gi|284089024|gb|EFC42684.1| predicted protein [Naegleria gruberi]
Length = 451
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 152/313 (48%), Gaps = 30/313 (9%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D + K +S + L SL IS + + D G YL +++L LN+ + +S
Sbjct: 142 NGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYIS 200
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLEL 283
+ L L+++ Q+ +G + + L SLN+ CG IG EG+ ++ + L L +
Sbjct: 201 EMKQLASLDISYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGVKLISEMRQLTSLNI 258
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++ +G G + +S + L S+N+S I D + ++ + L SLN+ A +I + G
Sbjct: 259 GESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISLNIRANRIVNQGAKF 318
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + L L++ RI G + K L SL I +++ G K I ++ LTLLN+
Sbjct: 319 ISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNI 378
Query: 404 SQNCNLTDKTLELIS---------------GLTG---------LVSLNVSNSRITSAGLR 439
S N + D+ +LIS G+ G L SLN++++RI G +
Sbjct: 379 SNN-EIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSLNIADNRIGGEGAK 437
Query: 440 HLKPLKNLRSLTL 452
+ +K L S+TL
Sbjct: 438 LISEMKQLTSITL 450
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 115/218 (52%), Gaps = 3/218 (1%)
Query: 247 KF-SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
KF S++ L SL++ GIGDE ++ + L L++S +G G ++LS + L S+
Sbjct: 126 KFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIGDEGAKYLSEMKQLISL 185
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
N+ I +G+ + ++ + L SL++ Q+ G + + LT L++ G RI G
Sbjct: 186 NIGKNEIDEGA-KYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNICGNRIGIEGV 244
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ + L SL I + G K I ++ LT LN+S N + D+ +LIS + L+S
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNL-IGDEGAKLISEMKQLIS 303
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
LN+ +RI + G + + ++ LRSL + + ++ +K
Sbjct: 304 LNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK 341
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 17/384 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG--VNDKWMDVI---------AS 54
IS+Q FN + LT + F +Q Q+ VN + D + S
Sbjct: 70 ISKQFFNVIKERSKLTIQFKKKFTKKRVQLFLKSQFMNCIVNVTYSDWLLDSFEEAKFIS 129
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+ +SG+ + D + + L SLD + + I D G ++L + L SL+
Sbjct: 130 KMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANL-IGDEGAKYLSEMKQLISLNIG 188
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSDM 173
+N +G K + + L LD+ G ++ + +L SLNI C N I +
Sbjct: 189 KNE--IDEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQLTSLNI--CGNRIGIEGV 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I S + G + +++LT LN+ + +S + L L
Sbjct: 245 KLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIGDEGAKLISEMKQLISL 304
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N+ ++ + G + S + L SLN+ + IG EG+ ++ + L L + ++ + G
Sbjct: 305 NIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVKLISEMKQLISLNIRSNRISNEGT 364
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L +N+S I D + ++ + LKSL++ QI G ++ + LT L
Sbjct: 365 KLISEMRQLTLLNISNNEIGDEETKLISEMKQLKSLDISYNQIGIEGAKLISEMKQLTSL 424
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
++ RI GA + K L S+
Sbjct: 425 NIADNRIGGEGAKLISEMKQLTSI 448
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 149/321 (46%), Gaps = 36/321 (11%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+ + + + DS + K +S + L SL IS + + D + +++LT L++ +
Sbjct: 110 VNVTYSDWLLDSFEEAKFISKMKQLTSLSISGNGIGDEEAKLISEMKQLTSLDISANLIG 169
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
LS + L LN+ + ++ D+G + S + L SL++ + EG + +
Sbjct: 170 DEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLASLDISYTQVDVEGAKCIREMRQ 228
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L + ++G G++ +S + L S+N+ + I + ++ + L SLN+ I
Sbjct: 229 LTSLNICGNRIGIEGVKLISEMRQLTSLNIGESDIGIEGTKLISEMKQLTSLNISNNLIG 288
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ + L L++ RI + GA ++ + LRSL I + GVK
Sbjct: 289 DEGAKLISEMKQLISLNIRANRIVNQGAKFISEMRQLRSLNISNNRIGIEGVK------- 341
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL----- 452
LIS + L+SLN+ ++RI++ G + + ++ L L +
Sbjct: 342 ------------------LISEMKQLISLNIRSNRISNEGTKLISEMRQLTLLNISNNEI 383
Query: 453 --ESCKVTANDIKRLQSRDLP 471
E K+ + ++K+L+S D+
Sbjct: 384 GDEETKLIS-EMKQLKSLDIS 403
>gi|290978242|ref|XP_002671845.1| predicted protein [Naegleria gruberi]
gi|284085417|gb|EFC39101.1| predicted protein [Naegleria gruberi]
Length = 439
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 163/361 (45%), Gaps = 28/361 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +D+S ++++D + H + ++L +L N C I G + L L+ LT L+ NN
Sbjct: 101 NLTRIDISDNEISDERVKHFGNLTHLTNLVIN-CNDIGVEGAKCLCQLNQLTRLNIG-NN 158
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ +G K + L NL KLD+ R NCI D + ++
Sbjct: 159 SLETEGAKYISELKNLTKLDIAR-------------------------NCIGDRGAQFIT 193
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L SL ++ + + G ++ + +LT L++ + + +S L L L +
Sbjct: 194 EMKQLTSLNLNRNGIEYLGAKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYD 253
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D+G S + L +L++ I EG ++ L L L + +G +G +H+S
Sbjct: 254 NNIGDEGAMHISEMKQLTNLDISRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHIS 313
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ NL + + I ++ + L L + A I + G ++ + LT LD++
Sbjct: 314 EMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYD 373
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I D G ++ K L L++ + G ++I+ L+ LT LN+ N + +D ELI
Sbjct: 374 NNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYIRKLNRLTFLNVHYN-SFSDSESELI 432
Query: 418 S 418
Sbjct: 433 E 433
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 5/325 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
L NLT + +N I+ + +K F L +L L + C I G L L +L LNI
Sbjct: 99 LKNLTRIDIS-DNEISDERVKHFGNLTHLTNLVI-NCNDIGVEGAKCLCQLNQLTRLNIG 156
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + K +S L NL L I+ + + D G ++ +++LT LNL +
Sbjct: 157 -NNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLGAKF 215
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L L+++ + +G ++ S+L L L + IGDEG ++++ + L L++
Sbjct: 216 ISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDI 275
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + S G + + L L ++N+ I + + ++ +++L L + + +I G
Sbjct: 276 SRNDIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYH 335
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L +F I + GA ++ K L L+I + D G HI ++ LT L++
Sbjct: 336 ISRMHQLTRLMIFANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDV 395
Query: 404 SQNCNLTDKTLELISGLTGLVSLNV 428
S N N+ + E I L L LNV
Sbjct: 396 SAN-NIGHEGAEYIRKLNRLTFLNV 419
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 25/237 (10%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLV---NLTGLCNL------------KCL----ELSD 285
C+ F L NL +++ I DE + NLT L NL KCL +L+
Sbjct: 93 CQIFECLKNLTRIDISDNEISDERVKHFGNLTHLTNLVINCNDIGVEGAKCLCQLNQLTR 152
Query: 286 TQVG-----SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+G + G +++S L NL ++++ I D + + + L SLNL+ I G
Sbjct: 153 LNIGNNSLETEGAKYISELKNLTKLDIARNCIGDRGAQFITEMKQLTSLNLNRNGIEYLG 212
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ + LT LD+ I GA + L L I + D G HI ++ LT
Sbjct: 213 AKFISEMYQLTSLDISNNDIGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTN 272
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L++S+N ++ + + I L L +LN+ ++ I G +H+ + NL L + S ++
Sbjct: 273 LDISRN-DIDSEGAKSICELYQLTNLNICSNYIGETGAKHISEMNNLTILEIGSNEI 328
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 10/202 (4%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
I S+G+ +S + + +++ D G +H+ + L +LD + I G + +
Sbjct: 232 IGSEGAKQISKLDQLTKLYIYDNNIGDEGAMHISEMKQLTNLDISRN-DIDSEGAKSICE 290
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L LT+L+ +N I G K + + NL L++ G ++ + +L L I +
Sbjct: 291 LYQLTNLNI-CSNYIGETGAKHISEMNNLTILEIGSNEIGSEGAYHISRMHQLTRLMI-F 348
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + K +S + L L I + + D G ++ +++LT L++ + + +
Sbjct: 349 ANDIGEKGAKHVSEMKQLTKLDIYDNNIGDEGTIHISEMKQLTYLDVSANNIGHEGAEYI 408
Query: 225 SALGSLFYLNLNRCQLSDDGCE 246
L L +LN++ SD E
Sbjct: 409 RKLNRLTFLNVHYNSFSDSESE 430
>gi|406834160|ref|ZP_11093754.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 390
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 30/311 (9%)
Query: 36 LCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS 95
+ L Q P +D + Q L+ + L + +TD+GL +L LQ LD + +IS
Sbjct: 95 ITLDQSPIGDDDL--AVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRT-KIS 151
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
D GLEHL+ L +NL +L + + G L GL
Sbjct: 152 DAGLEHLQTL-------------------------VNLCELTIAETSVTDAGTAKLAGLK 186
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L LN+ N +TD+ +K +S + NL +L + +TD G+A LK Q LT L+L+G P
Sbjct: 187 NLRVLNVSKTN-VTDTSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSLDGIP 245
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T + L L + L YL L + + L NL+ L+L++C + D + ++ +
Sbjct: 246 LTGSFLKELKGI-PLEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPVEDASIASIAAI 304
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L+ L L +T++ + L + +L S++++ T IS LR+L +LK + +
Sbjct: 305 ASLETLSLDNTKITEQAIVELKDMPSLVSLSINSTPISAEELRQLKATPNLKLVKAHNTK 364
Query: 336 ITDTGLAALTS 346
+T + AL +
Sbjct: 365 VTRGDVDALAA 375
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 143/267 (53%), Gaps = 8/267 (2%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+ L+ P+ L L L L+L +++D G + S + L+ L+L I D G
Sbjct: 95 ITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRLQKLDLSRTKISDAG 154
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L +L L NL L +++T V +G L+GL NL +N+S T ++D SL+ ++ + +L +
Sbjct: 155 LEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNT 214
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN--LRSLEICGGGLTD 386
L LD +TD GLA+L LT L L G +T S +L+ K L L +
Sbjct: 215 LILDGCNLTDVGLASLKDCQSLTFLSLDGIPLTGS---FLKELKGIPLEYLTLANSKCDG 271
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
K + L +L +L+L +NC + D ++ I+ + L +L++ N++IT + LK + +
Sbjct: 272 TTFKDVGTLKNLKMLSL-ENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPS 330
Query: 447 LRSLTLESCKVTANDIKRLQSRDLPNL 473
L SL++ S ++A ++++L++ PNL
Sbjct: 331 LVSLSINSTPISAEELRQLKAT--PNL 355
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 2/215 (0%)
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
DG ++F ++ + LD IGD+ L L L L L T++ +GL++LS + L
Sbjct: 81 DGWDQFYGGVEVDQITLDQSPIGDDDLAVLKQTPQLVGLSLRATKITDAGLKYLSSVPRL 140
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ ++LS T ISD L L L +L L + +TD G A L L L L++ +TD
Sbjct: 141 QKLDLSRTKISDAGLEHLQTLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTD 200
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+ + NL +L + G LTD G+ +KD SLT L+L LT L+ + G+
Sbjct: 201 TSLKVISEIPNLNTLILDGCNLTDVGLASLKDCQSLTFLSL-DGIPLTGSFLKELKGIP- 258
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L ++NS+ + + LKNL+ L+LE+C V
Sbjct: 259 LEYLTLANSKCDGTTFKDVGTLKNLKMLSLENCPV 293
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 159/329 (48%), Gaps = 11/329 (3%)
Query: 87 DFNFCIQISD-----GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
D++ I++ D GG H+ + S + G F G + + ++ L++
Sbjct: 44 DYSPVIEVKDRVNSLGGRAHMAVAAPAVLQSIVGKDW---DGWDQFYGGVEVDQITLDQS 100
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
L LK +L L+++ ITD+ +K LS + L+ L +S +K++D+G+ +L+
Sbjct: 101 PIGDDDLAVLKQTPQLVGLSLR-ATKITDAGLKYLSSVPRLQKLDLSRTKISDAGLEHLQ 159
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
L L L + VT A L+ L +L LN+++ ++D + S + NL +L LD
Sbjct: 160 TLVNLCELTIAETSVTDAGTAKLAGLKNLRVLNVSKTNVTDTSLKVISEIPNLNTLILDG 219
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
C + D GL +L +L L L + S L+ L G+ LE + L+ + + + +
Sbjct: 220 CNLTDVGLASLKDCQSLTFLSLDGIPLTGSFLKELKGIP-LEYLTLANSKCDGTTFKDVG 278
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L +LK L+L+ + D +A++ ++ L L L +IT+ L++ +L SL I
Sbjct: 279 TLKNLKMLSLENCPVEDASIASIAAIASLETLSLDNTKITEQAIVELKDMPSLVSLSINS 338
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
++ ++ +K +L L+ + N +T
Sbjct: 339 TPISAEELRQLKATPNLKLVK-AHNTKVT 366
>gi|207743293|ref|YP_002259685.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
gi|206594690|emb|CAQ61617.1| type III effector gala6 protein [Ralstonia solanacearum IPO1609]
Length = 625
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 201/460 (43%), Gaps = 34/460 (7%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 139 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 196
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 197 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 254
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 255 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 312
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 313 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 372
Query: 247 KFSRLTNLESLNLD------------------------SCGIGDEGLVNLTGLCNLKCLE 282
+R T L+SLNL +C I G L ++ L
Sbjct: 373 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 432
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 433 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 492
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
AL LT L+L RI +GA +L L L++ + G + + + LT LN
Sbjct: 493 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 552
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+S N T L SL+ N+R+ AG + L+
Sbjct: 553 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 592
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 3/276 (1%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LKS++ ++ A G++ L + G V+ A L +L A L L+LN ++
Sbjct: 142 LKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGL-ALLATRPLKSLSLNGIEID 200
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G + +L SL+L C IGD L ++ L+LS +G G R L+G
Sbjct: 201 AEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALAGAP- 259
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L S+NL GI D LA +LKSLN I D G+ T LT L+L G I
Sbjct: 260 LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIG 319
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+GA LR +L L++ L DAG + + SLT LN+ +N + D E ++ T
Sbjct: 320 PAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNV-RNNEIGDDGTEALARNT 378
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L SLN+S +RI G L L L L +C +
Sbjct: 379 TLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAI 414
>gi|290980745|ref|XP_002673092.1| predicted protein [Naegleria gruberi]
gi|284086673|gb|EFC40348.1| predicted protein [Naegleria gruberi]
Length = 498
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 176/381 (46%), Gaps = 11/381 (2%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFC---IQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S++ SG ++ L L FC + I+ +HL L +LT L N I +G
Sbjct: 115 SNIDPSGFKYICSLEQLTDLYMTFCYFRLPIA----KHLPSLKSLTYL-LITGNYIGVEG 169
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + L +L + G + GL +L LNI+ N IT K +S + L
Sbjct: 170 AKYIGEMKQLKQLHIANNNIGPEGAKYISGLEQLTFLNIR-ANEITVDGAKFISEMKQLT 228
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L I + + D G ++ G+++LT L++ + +S + ++ LN+ + +D
Sbjct: 229 VLNIIGNNICDEGAKFISGMKQLTNLDISVNNIGENGAKYVSEMMNITKLNIGFNSI-ND 287
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G + F + L LN++S IG G+ ++ L L ++ + H+S + NL
Sbjct: 288 GVKCFGEMKQLTDLNVNSRCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLI 347
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+++S I D ++ ++ ++ L LN+ + IT G+ + + LT+L I
Sbjct: 348 KLDISDNDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAK 407
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
GA + K+L L I + D G K I ++ LT L++ N + D+ ++ + G+ L
Sbjct: 408 GAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYN-EIGDEGVKFLCGMKQL 466
Query: 424 VSLNVSNSRITSAGLRHLKPL 444
LN ++ I+ G ++++ +
Sbjct: 467 TRLNTVDNNISDEGEKYIREM 487
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 145/303 (47%), Gaps = 3/303 (0%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I G +++ GL LT L+ R N IT G K + + L L++ G + G
Sbjct: 189 IGPEGAKYISGLEQLTFLNIRAN-EITVDGAKFISEMKQLTVLNIIGNNICDEGAKFISG 247
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L +L+I N I ++ K +S + N+ L I + + D G+ +++LT LN+
Sbjct: 248 MKQLTNLDIS-VNNIGENGAKYVSEMMNITKLNIGFNSIND-GVKCFGEMKQLTDLNVNS 305
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + ++ +S+ L +L++ + +S S++ NL L++ IGD G+ +++
Sbjct: 306 RCIGSNGVEYISSFNQLTHLSIAKNLISLYEAMHISQMKNLIKLDISDNDIGDNGVQSIS 365
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L +S + G++++ + NL + + I ++++ + L L++
Sbjct: 366 EMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNNIGAKGAKQISEMKHLAQLSIYH 425
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ D G ++ + LT LD+ I D G +L K L L ++D G K+I+
Sbjct: 426 NAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGMKQLTRLNTVDNNISDEGEKYIR 485
Query: 394 DLS 396
+++
Sbjct: 486 EMN 488
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 3/202 (1%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ NL +N + G E L ++ L L +E ++ + SG +++ L L + ++F
Sbjct: 82 IANLRVINNEEIGFNCEILDSMKELKKLN-IEY-NSNIDPSGFKYICSLEQLTDLYMTFC 139
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ L L SL L + I G + + L L + I GA Y+
Sbjct: 140 YFRLPIAKHLPSLKSLTYLLITGNYIGVEGAKYIGEMKQLKQLHIANNNIGPEGAKYISG 199
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+ L L I +T G K I ++ LT+LN+ N N+ D+ + ISG+ L +L++S
Sbjct: 200 LEQLTFLNIRANEITVDGAKFISEMKQLTVLNIIGN-NICDEGAKFISGMKQLTNLDISV 258
Query: 431 SRITSAGLRHLKPLKNLRSLTL 452
+ I G +++ + N+ L +
Sbjct: 259 NNIGENGAKYVSEMMNITKLNI 280
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 50/261 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG--------------------- 97
L ++D+S +++ ++G ++ + N+ L+ F I+DG
Sbjct: 251 LTNLDISVNNIGENGAKYVSEMMNITKLNIGFN-SINDGVKCFGEMKQLTDLNVNSRCIG 309
Query: 98 --GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G+E++ + LT LS +N + M + + NL+KLD+
Sbjct: 310 SNGVEYISSFNQLTHLSIAKNLISLYEAMH-ISQMKNLIKLDISD--------------- 353
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
N I D+ ++ +S + L L +S +T GI Y+ + LT L
Sbjct: 354 ----------NDIGDNGVQSISEMNQLTELNVSSIDITPIGIQYICKMDNLTYLISAHNN 403
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ A +S + L L++ + D+G + S + L L++ IGDEG+ L G+
Sbjct: 404 IGAKGAKQISEMKHLAQLSIYHNAVGDEGAKFISEMEQLTFLDIGYNEIGDEGVKFLCGM 463
Query: 276 CNLKCLELSDTQVGSSGLRHL 296
L L D + G +++
Sbjct: 464 KQLTRLNTVDNNISDEGEKYI 484
>gi|87307769|ref|ZP_01089912.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
gi|87289383|gb|EAQ81274.1| serine/threonine protein kinase [Blastopirellula marina DSM 3645]
Length = 1283
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 197/457 (43%), Gaps = 34/457 (7%)
Query: 9 QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD 68
++ N ++++ +T AF DC LQ + L P V D+W+ + + + + S +
Sbjct: 855 KVTNLMLWATPITREDFLAFADCKLQGVLLSYTP-VKDEWLTHL-THPEAFTDLGFSFTQ 912
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D GL ++ + +L +I+D GL + L S+ R+ ++T G+ F
Sbjct: 913 IGDEGLAAFQNSKKIVNLHLEHT-KITDVGLAYFHDCRELKSIRLRQT-SVTDAGVLPFK 970
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +L L + L+ L + I W D D K S
Sbjct: 971 HCSKLEELSLATTNVTAAAVEELRA--ALPNCKITW-----DGDAKTES----------P 1013
Query: 189 CSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCE 246
K +D+ Y+ + + LN G + +A + A L ++N N C+ +DDG
Sbjct: 1014 EEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSAT-ELPPAPFRLTHVNFNLCKKATDDGLA 1072
Query: 247 KFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
F+ ++ SL + + + GL +LK L + + S+GL L+ NLE I
Sbjct: 1073 VFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYSPYVSAGLPLLANCKNLEKI 1132
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+L + LR +A L L +NL A + D L+ T+ LT+L+ +I D G
Sbjct: 1133 SLMGVKFTREELRPIAELP-LTFVNLGATPVQDEWLSDFTNAESLTYLNFASTKIGDKGL 1191
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
A +N L+ L + +TD G+ + D L +L L QN + D L L
Sbjct: 1192 AAFQNCNALQQLSLQDTNITDEGLAYFYDCRDLEILQL-QNTKVRDFGLLRFKSCQKLKQ 1250
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ +S +R+T+AG+ LK +L C V +D+
Sbjct: 1251 VEISKTRVTAAGVDELK-------KSLPYCTVVWDDV 1280
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+S DG + F R NL+ L L C GL +L+ + L L T + +
Sbjct: 818 ISADGLKHFRRCRNLKVLALPHCDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFAD- 876
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ + LS+T + D L L + L QI D GLAA + + +L L +
Sbjct: 877 CKLQGVLLSYTPVKDEWLTHLTHPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTK 936
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
ITD G AY + + L+S+ + +TDAGV K S L L+L+ N+T +E
Sbjct: 937 ITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLA-TTNVTAAAVE 991
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 160/394 (40%), Gaps = 37/394 (9%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+S+ FN I+ ++ ++ +L+ I+A G+K F NL L L C
Sbjct: 781 KLKSVFFNQAIECTNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPHC 840
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
I GL +L K+ +L + W IT D + L+ + +S + V D + +L
Sbjct: 841 DNIGSGLSHLSECDKVTNLML-WATPITREDFLAFAD-CKLQGVLLSYTPVKDEWLTHLT 898
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
+ T LG F Q+ D+G F + +L+L+
Sbjct: 899 HPEAFT------------------DLGFSF------TQIGDEGLAAFQNSKKIVNLHLEH 934
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL- 320
I D GL LK + L T V +G+ + LE ++L+ T ++ ++ +L
Sbjct: 935 TKITDVGLAYFHDCRELKSIRLRQTSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEELR 994
Query: 321 AGLSSLK-SLNLDAR-----QITDTGLAA--LTSLTGLTHLDLFGARITDSGAAYLRNFK 372
A L + K + + DA+ + LAA + S+ G+ L+ G I + F+
Sbjct: 995 AALPNCKITWDGDAKTESPEEKNSDNLAAKYVLSIGGIVRLNGGGTDIHSATELPPAPFR 1054
Query: 373 -NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
+ +C TD G+ + + L + N+T + L L LN + S
Sbjct: 1055 LTHVNFNLCKKA-TDDGLAVFANCKDIVSLTMRFTPNVTGRGLAYFKNCKDLKELNCNYS 1113
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
SAGL L KNL ++L K T +++ +
Sbjct: 1114 PYVSAGLPLLANCKNLEKISLMGVKFTREELRPI 1147
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 99/247 (40%), Gaps = 30/247 (12%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD 285
L S+F+ C +++ F+ ++E+L L + I +GL + NLK L L
Sbjct: 782 LKSVFFNQAIEC--TNEEFAVFADCQDIEALTLWAVPTISADGLKHFRRCRNLKVLALPH 839
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
SGL HLS + ++ L T I+ A L+ + L + D L LT
Sbjct: 840 CDNIGSGLSHLSECDKVTNLMLWATPITREDFLAFAD-CKLQGVLLSYTPVKDEWLTHLT 898
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L +I D G A +N K + +L + +TD G+ + D L + L Q
Sbjct: 899 HPEAFTDLGFSFTQIGDEGLAAFQNSKKIVNLHLEHTKITDVGLAYFHDCRELKSIRLRQ 958
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ +T AG+ K L L+L + VTA ++ L
Sbjct: 959 -------------------------TSVTDAGVLPFKHCSKLEELSLATTNVTAAAVEEL 993
Query: 466 QSRDLPN 472
++ LPN
Sbjct: 994 RAA-LPN 999
>gi|283778456|ref|YP_003369211.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
gi|283436909|gb|ADB15351.1| hypothetical protein Psta_0665 [Pirellula staleyi DSM 6068]
Length = 397
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 141/279 (50%), Gaps = 6/279 (2%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
G+ L G++ ++L G T C+D L + L +++++ +S G + + L
Sbjct: 104 EGVHQLHGIRDISL---HGRAFTDKCIDELIKVHQLRGVSISKTSISPAGLARLASCREL 160
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
S++L I D+ L + G+ +++ L++ + + GL+H + NL ++ + I+D
Sbjct: 161 VSISLWGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAERENLATLEIYVAAITD 220
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ L L L+ L L +TD + + L L L I+D G +L + L
Sbjct: 221 AGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKL 280
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G + G + +L +L L++ S + N+ D+ L I+ L GL L + S++T
Sbjct: 281 EVLLVSGCPIDGTGFAKLCELQNLRLVDAS-STNINDEGLAAIASLPGLTLLEIRQSKVT 339
Query: 435 SAGLRHLKPLKNLRSLTLE-SCKVTANDIKRLQSRDLPN 472
GL+HL+ + LRSL + + ++T +D K L+++ LPN
Sbjct: 340 GKGLQHLERSEQLRSLLISITDELTLDDAKALKAK-LPN 377
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 33/255 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L V +S + ++ +GL L C L S+ + +I D L+ + G+ ++ L R+ +
Sbjct: 136 LRGVSISKTSISPAGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRS-S 193
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGL---VNLKGLMKLESLNIKWCNCITDSDMKP 175
IT +G++ FA NL L++ GL VNL L KLE L +TD M
Sbjct: 194 ITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNLPKLRKLELLG----TSVTDQSMPT 249
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ +L+ L++ ++D G+ +L +KL +L + GCP+
Sbjct: 250 IGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCPIDGT---------------- 293
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
G K L NL ++ S I DEGL + L L LE+ ++V GL+H
Sbjct: 294 --------GFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQH 345
Query: 296 LSGLTNLESINLSFT 310
L L S+ +S T
Sbjct: 346 LERSEQLRSLLISIT 360
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 25/234 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GL L +L S+++ W I D +K ++G+ +++ LQ+ S +TD G+ + +
Sbjct: 149 AGLARLASCRELVSISL-WGPEIEDDHLKAVAGIPSVQHLQVIRSSITDEGLQHFAEREN 207
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L L + +T A L SL L L L L ++D R +L L LD+ I
Sbjct: 208 LATLEIYVAAITDAGLKSLVNLPKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSIS 267
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
DEGL L+ L+ L +S + +G L L NL ++ S T I+
Sbjct: 268 DEGLTFLSRNEKLEVLLVSGCPIDGTGFAKLCELQNLRLVDASSTNIN------------ 315
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
D GLAA+ SL GLT L++ +++T G +L + LRSL I
Sbjct: 316 ------------DEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERSEQLRSLLI 357
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 25/306 (8%)
Query: 40 QYPGVND---------KWMDVIASQ--GSSLLSVDL----SGSDVTDSGLIH-LKDCSNL 83
+YP V D +W+ + + G+++L+V SG D+ +H ++D S L
Sbjct: 59 EYPNVIDGSIQQSNQPRWLRYLFGENFGANVLTVTARGTSSGDDIEGVHQLHGIRDIS-L 117
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
F +D ++ L + L +S + +I+ G+ A LV + L
Sbjct: 118 HGRAF------TDKCIDELIKVHQLRGVSISKT-SISPAGLARLASCRELVSISLWGPEI 170
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L + G+ ++ L + + ITD ++ + NL +L+I + +TD+G+ L L
Sbjct: 171 EDDHLKAVAGIPSVQHLQVI-RSSITDEGLQHFAERENLATLEIYVAAITDAGLKSLVNL 229
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
KL L L G VT + ++ SL L L+ +SD+G SR LE L + C
Sbjct: 230 PKLRKLELLGTSVTDQSMPTIGRFRSLRQLRLDAHSISDEGLTFLSRNEKLEVLLVSGCP 289
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
I G L L NL+ ++ S T + GL ++ L L + + + ++ L+ L
Sbjct: 290 IDGTGFAKLCELQNLRLVDASSTNINDEGLAAIASLPGLTLLEIRQSKVTGKGLQHLERS 349
Query: 324 SSLKSL 329
L+SL
Sbjct: 350 EQLRSL 355
>gi|291001373|ref|XP_002683253.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
gi|284096882|gb|EFC50509.1| hypothetical protein NAEGRDRAFT_45222 [Naegleria gruberi]
Length = 461
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 161/316 (50%), Gaps = 13/316 (4%)
Query: 68 DVTDSGLIH---LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
D+ +G+I + +NLQ L+ N C +I + G++ + L NL LS N + A+G+
Sbjct: 145 DIPKAGIIFCQAISQLTNLQKLNVNNC-KIGNLGVQFITQLGNLMELSVI-NTGMDAKGL 202
Query: 125 KAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
A L NL KL + L N+K +L SL++ + + K +S + NL
Sbjct: 203 NLIATRLKNLTKLQFNGTVQHVTSLSNMK---QLTSLSMGFDVDVDVKGAKAISEMNNLT 259
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
+L ++ + D G+ + + +LT L + G +T L L L L LNLN + +
Sbjct: 260 NLSLNTN---DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGN 316
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+G + S L L SL ++ GI +G +T L L L +S+ + + G+++L+ L L
Sbjct: 317 EGAKLISELDQLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQL 376
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
++N FT I + ++ L+ +++LK LN+ + D G+ ++ + LT LD+ I++
Sbjct: 377 TNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISE 436
Query: 363 SGAAYLRNFKNLRSLE 378
G A L+ K L+ L+
Sbjct: 437 EGVAKLKEMKQLKVLK 452
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLE 303
C+ S+LTNL+ LN+++C IG+ G+ +T L NL L + +T + + GL ++ L NL
Sbjct: 154 CQAISQLTNLQKLNVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLKNLT 213
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ + T SL + L+SL S+ D + G A++ + LT+L L D
Sbjct: 214 KLQFNGTVQHVTSLSNMKQLTSL-SMGFDV-DVDVKGAKAISEMNNLTNLSL---NTNDE 268
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G + L SL++CG LT G+K + L L LNL+ + + ++ +LIS L L
Sbjct: 269 GLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQL 328
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
SL +++ I G + + LK L SLT+ + + +K L +LP L +
Sbjct: 329 TSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYL--TELPQLTN 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 37/332 (11%)
Query: 99 LEHLRGLSNLTSL------------SFRRNNAITAQGM---KAFAGLINLVKLDLERCTR 143
LE + ++ LTSL S+ I G+ +A + L NL KL++ C
Sbjct: 114 LESFKFMTQLTSLEIPNVDLGEISESYFHVKDIPKAGIIFCQAISQLTNLQKLNVNNCKI 173
Query: 144 IHGG---LVNLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSKVTDSG 196
+ G + L LM+L +N T D K L + L NL LQ + T
Sbjct: 174 GNLGVQFITQLGNLMELSVIN-------TGMDAKGLNLIATRLKNLTKLQFNG---TVQH 223
Query: 197 IAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ L +++LT L++ V ++S + +L L+LN +D+G E+ ++T L
Sbjct: 224 VTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLNT---NDEGLEEICKMTQLT 280
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISD 314
SL + + GL L L L+ L L+D + G+ G + +S L L S+ ++ GI
Sbjct: 281 SLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELDQLTSLEINDIGIDK 340
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ + L L SL + I + G+ LT L LT+L+ +I + G YL NL
Sbjct: 341 KGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLNARFTKIDNEGVKYLSEMANL 400
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L I + D GV+ I + +LT L++ QN
Sbjct: 401 KILNIKRNYVQDLGVESICGMKNLTELDIEQN 432
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 143/299 (47%), Gaps = 14/299 (4%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S LTNL+ L ++ K+ + G+ ++ L L L++ + A L+ ++
Sbjct: 155 QAISQLTNLQKLNVNNCKIGNLGVQFITQLGNLMELSVINTGMDAKGLNLIATRLK---- 210
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELSDTQVG 289
NL + Q + + + L+N++ L S G + +G ++ + NL L L+
Sbjct: 211 NLTKLQF-NGTVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAISEMNNLTNLSLN---TN 266
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 348
GL + +T L S+ + ++ L+ L L L+ LNL D + G ++ L
Sbjct: 267 DEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHEDFGNEGAKLISELD 326
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LT L++ I GA ++ N K L SL I + + GVK++ +L LT LN ++
Sbjct: 327 QLTSLEINDIGIDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLTELPQLTNLN-ARFTK 385
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ ++ ++ +S + L LN+ + + G+ + +KNL L +E +++ + +L+
Sbjct: 386 IDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQNEISEEGVAKLKE 444
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 118/266 (44%), Gaps = 25/266 (9%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K +++IA++ +L + +G T + L + L SL F + + G + +
Sbjct: 196 GMDAKGLNLIATRLKNLTKLQFNG---TVQHVTSLSNMKQLTSLSMGFDVDVDVKGAKAI 252
Query: 103 RGLSNLTSLSFRRNNA--------------------ITAQGMKAFAGLINLVKLDLERCT 142
++NLT+LS N+ +T G+K L L KL+L
Sbjct: 253 SEMNNLTNLSLNTNDEGLEEICKMTQLTSLKVCGFYLTTLGLKFLPRLKKLRKLNLNDHE 312
Query: 143 RI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+ G + L +L SL I I K ++ L L SL IS + + + G+ YL
Sbjct: 313 DFGNEGAKLISELDQLTSLEINDIG-IDKKGAKFITNLKQLTSLTISNNPIFNEGVKYLT 371
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
L +LT LN + + LS + +L LN+ R + D G E + NL L+++
Sbjct: 372 ELPQLTNLNARFTKIDNEGVKYLSEMANLKILNIKRNYVQDLGVESICGMKNLTELDIEQ 431
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQ 287
I +EG+ L + LK L+ +D +
Sbjct: 432 NEISEEGVAKLKEMKQLKVLKKADQR 457
>gi|290982059|ref|XP_002673748.1| predicted protein [Naegleria gruberi]
gi|284087334|gb|EFC41004.1| predicted protein [Naegleria gruberi]
Length = 370
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 142/289 (49%), Gaps = 2/289 (0%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+++ L + LK L + + + +GI YL L++LT LN+ C + L L L +L
Sbjct: 23 NLQVLDSMKELKKLNLEYNNIDPNGIKYLGSLKQLTDLNVSCCYI-GLNLSHLILLKALT 81
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+LN+ + +G + + L L++ S IG EG ++GL L L + +
Sbjct: 82 HLNITSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKKD 141
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G +H+S + L +N+ I DG R ++ + L +L++ I + G ++ L ++
Sbjct: 142 GAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVS 201
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LD+ G I + GA ++ K L L I + G ++I L+ LT L++S N N+ D
Sbjct: 202 ILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTN-NIGD 260
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
+ + I + L L++ ++I G + + LKNL +L + ++ N
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDN 309
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 4/342 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L+ L + L L+ NN I G+K L L L++ C I L +L L L
Sbjct: 24 LQVLDSMKELKKLNLEYNN-IDPNGIKYLGSLKQLTDLNV-SCCYIGLNLSHLILLKALT 81
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
LNI N I K + + L L I + + G Y+ GL++LT LN+ +
Sbjct: 82 HLNI-TSNNIRAEGAKYIGEMKQLTKLSIGSNDIGPEGAKYISGLEQLTYLNIRSNDIKK 140
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+S + L YLN+ + D G S + L +L++ IG+EG ++ L N+
Sbjct: 141 DGAKHISEMKQLTYLNVVGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNV 200
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L++ + G + + + L + + I + ++ L+ L L++ I D
Sbjct: 201 SILDIGGNSINEKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGD 260
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G + + LT L + +I GA + KNL +L I G + D G + I +++ L
Sbjct: 261 EGAKYIGQMKQLTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQL 320
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
T+L++S + N+T ++ IS + L L + ++ I S G ++
Sbjct: 321 TILDIS-SINITPIGIKYISNMEYLTDLRIIDNNIDSMGAKY 361
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 127/273 (46%), Gaps = 2/273 (0%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G +++ + LT LS N+ I +G K +GL L L++ G ++ + +L
Sbjct: 94 GAKYIGEMKQLTKLSIGSND-IGPEGAKYISGLEQLTYLNIRSNDIKKDGAKHISEMKQL 152
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LN+ N I D + +S + L +L + + + + G Y+ L +++L++ G +
Sbjct: 153 TYLNV-VGNHICDGGARFISEMKQLSNLSVGYNDIGEEGAKYISELMNVSILDIGGNSIN 211
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+ + L L + C + +G + S L L L++ + IGDEG + +
Sbjct: 212 EKGAKFIGEMKQLTDLRIYCCNIGVEGTQYISSLNQLTHLSISTNNIGDEGAKYIGQMKQ 271
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L + + ++G G + + L NL ++ +S I D + ++ ++ L L++ + IT
Sbjct: 272 LTDLSIRENKIGIEGAKSIGQLKNLLNLYISGNEIGDNGAQFISEMNQLTILDISSINIT 331
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
G+ ++++ LT L + I GA Y N
Sbjct: 332 PIGIKYISNMEYLTDLRIIDNNIDSMGAKYQSN 364
>gi|290970038|ref|XP_002668017.1| predicted protein [Naegleria gruberi]
gi|284081041|gb|EFC35273.1| predicted protein [Naegleria gruberi]
Length = 306
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 126/247 (51%), Gaps = 2/247 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K + DS +K +S + L SL IS +++ G+ ++ G+++LT L++ +
Sbjct: 55 INLKVFRYLLDSFEKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDISFNQAS 114
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+S + L L +++ + D+G + S + L SLNL I DEG ++ +
Sbjct: 115 DEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKYISEMEQ 174
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++S + G++ + + L S+N+ + GI + ++ + L SLN+ +I
Sbjct: 175 LTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIG 234
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ + L L + +I D GA Y+ + L SL I G + D G K+I D+
Sbjct: 235 DEGAKYISEMKQLISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQ 294
Query: 398 LTLLNLS 404
LT L++S
Sbjct: 295 LTSLDIS 301
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 7/205 (3%)
Query: 250 RLTNLESLN--LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
R+ NL+ LDS E L ++ + L L++S Q+G G++ +SG+ L S+++
Sbjct: 53 RIINLKVFRYLLDSF----EKLKFISDMKRLTSLDISFNQIGVQGVKFISGMKQLTSLDI 108
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
SF SD + ++ + L SL + I D G ++ + LT L+L+ I D GA Y
Sbjct: 109 SFNQASDEGAKYISEMKQLTSLGISKNLIGDEGAKYISEMKQLTSLNLYYNEICDEGAKY 168
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ + L SL+I + GVK IK++ LT LN+ N + + + IS + L SLN
Sbjct: 169 ISEMEQLTSLDISSNLIDVEGVKFIKEMKQLTSLNIYYN-GIGVEGAKYISEMKQLTSLN 227
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
++N+ I G +++ +K L SL +
Sbjct: 228 ITNNEIGDEGAKYISEMKQLISLII 252
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 3/236 (1%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L + D L SLD +F QI G++ + G+ LTSL N A + +G K + + L
Sbjct: 70 LKFISDMKRLTSLDISFN-QIGVQGVKFISGMKQLTSLDISFNQA-SDEGAKYISEMKQL 127
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L + + G + + +L SLN+ + N I D K +S + L SL IS + +
Sbjct: 128 TSLGISKNLIGDEGAKYISEMKQLTSLNL-YYNEICDEGAKYISEMEQLTSLDISSNLID 186
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
G+ ++K +++LT LN+ + +S + L LN+ ++ D+G + S +
Sbjct: 187 VEGVKFIKEMKQLTSLNIYYNGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQ 246
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L SL + IGDEG + + L L +S ++G G +++S + L S+++SF
Sbjct: 247 LISLIISRNQIGDEGAKYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDISF 302
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S++L +++ D G ++ + L SLD + + I G++ ++ + LTSL+
Sbjct: 146 SEMKQLTSLNLYYNEICDEGAKYISEMEQLTSLDISSNL-IDVEGVKFIKEMKQLTSLNI 204
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L L++ G + + +L SL I N I D
Sbjct: 205 YY-NGIGVEGAKYISEMKQLTSLNITNNEIGDEGAKYISEMKQLISLIIS-RNQIGDEGA 262
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K + + L SL IS +++ D G Y+ +++LT L++
Sbjct: 263 KYICEMEQLTSLNISGNEIGDEGAKYISDMKQLTSLDI 300
>gi|290994540|ref|XP_002679890.1| predicted protein [Naegleria gruberi]
gi|284093508|gb|EFC47146.1| predicted protein [Naegleria gruberi]
Length = 293
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 1/280 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G ++ +++LT L++ + +S + L LN+ +
Sbjct: 1 MKQLTSLSIGVNEIGVEGGKFISEIKQLTSLDISDNQIGVEGAKLISEMKQLTSLNIFKN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ +G + S + L SL++ I DEG+ +++ + L L++S ++G G + +SG
Sbjct: 61 GIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKLISG 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N+S ISD + ++ + L SL + I D G L+ + LT LD+
Sbjct: 121 MKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDISSN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+ GA ++ K L SL+I + D G + I + LT LN+S N L D+ +LIS
Sbjct: 181 PMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIIL-DEGAKLIS 239
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ L SL++ + I G + + +K L SL + + +++
Sbjct: 240 EMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRIS 279
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 4/283 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIK 163
+ LTSLS N I +G K + + L LD+ + + G + + + +L SLNI
Sbjct: 1 MKQLTSLSIGVNE-IGVEGGKFISEIKQLTSLDISDNQIGVEGAKL-ISEMKQLTSLNI- 57
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N I K +S + L SL IS + + D G+ + +++LT L++ +
Sbjct: 58 FKNGIGVEGAKLISEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKNEIGVEGAKL 117
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+++ ++SD+G + S + L SL + GI D+G L+ + L L++
Sbjct: 118 ISGMKQLTSLNISKNEISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDI 177
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S +G G + +S + L S+++S I D ++G+ L SLN+ I D G
Sbjct: 178 SSNPMGVEGAKFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKL 237
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
++ + LT LD+ I D GA ++ K L SL + ++D
Sbjct: 238 ISEMKQLTSLDICYNEIGDEGAKFISGMKQLTSLYVYANRISD 280
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+SG+ + D G+ + + L SLD + +I G + + G+ LTSL+
Sbjct: 71 SEMKQLTSLDISGNLIYDEGVKSISEMKQLTSLDISKN-EIGVEGAKLISGMKQLTSLNI 129
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I+ +G K + + L L + + G L + +L SL+I N +
Sbjct: 130 SKNE-ISDEGAKLISEMKQLTSLTIYKSGIDDKGAKYLSEIKQLTSLDIS-SNPMGVEGA 187
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS + + D G ++ G+++LT LN+ + +S + L L
Sbjct: 188 KFISEMKQLTSLDISNNLIYDEGAEFISGMKQLTSLNISNNIILDEGAKLISEMKQLTSL 247
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
++ ++ D+G + S + L SL + + I DE
Sbjct: 248 DICYNEIGDEGAKFISGMKQLTSLYVYANRISDEA 282
>gi|168701212|ref|ZP_02733489.1| hypothetical protein GobsU_16936 [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 141/288 (48%), Gaps = 14/288 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------- 93
V D+ + +A Q +L+ + L+G+ +TD+GL HL L +L + +
Sbjct: 114 VTDQKLAELAGQ-PNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRG 172
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I+D GL LR + LT LS +T G + A + L L LE L NL
Sbjct: 173 ITDAGLNELRAIKGLTDLSL-GGIEVTDAGARTLATMPQLRVLGLEGTKITDAALENLAP 231
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L +++ + +TD+ +K L+ L +++S + VTD+G+ L L +LT L+L
Sbjct: 232 LTELTEIDLTFTK-VTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELTDLDLSY 290
Query: 214 CPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ +L+A + L ++L + ++ D+G + + L LNL +GD+G+ L
Sbjct: 291 TKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGDDGVSAL 350
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
NL L L T+V G+R L L + L T ++DG++R+L
Sbjct: 351 AAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTDGAIREL 398
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 15/299 (5%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD + L+G NL L+++ + +TD+G+ +L L L+ L+L G A S +
Sbjct: 114 VTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGATSAGSYRGI 173
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+D G + + L L+L + D G L + L+ L L T+
Sbjct: 174 -------------TDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTK 220
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + L +L+ LT L I+L+FT ++D L+ LA L + L + +TD G+ L +L
Sbjct: 221 ITDAALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAAL 280
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKN-LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LDL + D G L N L S+ + + D G K + LT LNL
Sbjct: 281 PELTDLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYT 340
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ D + ++ L L + +R+T G+R L + L + L +VT I+ L
Sbjct: 341 -RVGDDGVSALAAAPNLTGLTLVATRVTDDGVRSLFACRKLAYVELRETEVTDGAIREL 398
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 35/270 (12%)
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
F L+L ++D + + NL L L+ I D GL +L L L L L T G+
Sbjct: 105 FGLSLAHHDVTDQKLAELAGQPNLVVLRLNGASITDAGLKHLAALDGLSALSLHGTSRGA 164
Query: 291 -----------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+GL L + L ++L ++D R LA + L+ L L+ +ITD
Sbjct: 165 TSAGSYRGITDAGLNELRAIKGLTDLSLGGIEVTDAGARTLATMPQLRVLGLEGTKITDA 224
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L L LT LT +DL ++TD+G +L FK L + + +TDAGV+ + L LT
Sbjct: 225 ALENLAPLTELTEIDLTFTKVTDAGLKHLARFKKLTRVRLSSTAVTDAGVRELAALPELT 284
Query: 400 LLNLS------------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L+LS + + D+ + ++ GL LN+ +R+
Sbjct: 285 DLDLSYTKAGDGGVTALAAAPNRLTSVSLEKTRVGDEGAKALAAAPGLTRLNLGYTRVGD 344
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
G+ L NL LTL + +VT + ++ L
Sbjct: 345 DGVSALAAAPNLTGLTLVATRVTDDGVRSL 374
>gi|83748568|ref|ZP_00945588.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83724776|gb|EAP71934.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 629
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 201/460 (43%), Gaps = 34/460 (7%)
Query: 11 FNELVYSRCLTEVSLEAFR--DCALQDLCLGQY--PGVNDKWMDVIASQGSSLLSVDLSG 66
+ L R E++LEA + ++ L +G+ GV++ + ++A++ L S+ L+G
Sbjct: 143 YPALKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGLALLATR--PLKSLSLNG 200
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++ G L C++L SL C I D L ++ SL N I G +A
Sbjct: 201 IEIDAEGARLLATCASLTSLSLTGC-SIGDRAATALAQSRSIASLDLSVN-MIGPDGARA 258
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AG LV L+L G + L L+SLN N I D+ + + T L L
Sbjct: 259 LAG-APLVSLNLHNNGIGDEGALALATSGTLKSLNAS-NNGIGDAGVLGFADNTVLTQLN 316
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
++ + + +G L+ LT L+L + A L+ SL LN+ ++ DDG E
Sbjct: 317 LAGNMIGPAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNVRNNEIGDDGTE 376
Query: 247 KFSRLTNLESLNLD------------------------SCGIGDEGLVNLTGLCNLKCLE 282
+R T L+SLNL +C I G L ++ L
Sbjct: 377 ALARNTTLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAIDPYGASALARNTSVASLH 436
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L ++G SG R ++ + L ++LS I D + LAG SL SLNLD +I D G A
Sbjct: 437 LGSNRIGDSGARAIATIRTLTLLDLSRNNIHDAGAQVLAGNDSLMSLNLDDNEIGDDGTA 496
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
AL LT L+L RI +GA +L L L++ + G + + + LT LN
Sbjct: 497 ALAQHPRLTSLNLASNRIGPTGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLN 556
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+S N T L SL+ N+R+ AG + L+
Sbjct: 557 VSGNAIGEAGARAFAEKSTSLTSLDARNNRMGEAGAKMLE 596
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 3/276 (1%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LKS++ ++ A G++ L + G V+ A L +L A L L+LN ++
Sbjct: 146 LKSVRFKGELTLEALKALPPGVEHLEIGRSTGSGVSNAGL-ALLATRPLKSLSLNGIEID 204
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G + +L SL+L C IGD L ++ L+LS +G G R L+G
Sbjct: 205 AEGARLLATCASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALAGAP- 263
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L S+NL GI D LA +LKSLN I D G+ T LT L+L G I
Sbjct: 264 LVSLNLHNNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIG 323
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+GA LR +L L++ L DAG + + SLT LN+ +N + D E ++ T
Sbjct: 324 PAGARALRRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNV-RNNEIGDDGTEALARNT 382
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L SLN+S +RI G L L L L +C +
Sbjct: 383 TLKSLNLSYNRIGLQGAGALGGNTTLSELDLRACAI 418
>gi|301126468|ref|XP_002909849.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101999|gb|EEY60051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 427
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 176/362 (48%), Gaps = 37/362 (10%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+L+ ++ C ++D +E L LS LTS++ + +T + +K
Sbjct: 87 HLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIK---------------- 130
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAY 199
L+ L S+N+ +C ++D + + S L+ L L + CS+V D+GI
Sbjct: 131 ------LLTESQSNSLTSVNLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRA 184
Query: 200 LKGLQKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLE 255
L L+ L LNL C +T + +L+ + SL LNL+ C QL+D+G S L L
Sbjct: 185 LARLKNLQTLNLWYCNQGALTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLR 244
Query: 256 SLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGI 312
L + + G + D+G + L L NL L+++ + +G L L S NL + + I
Sbjct: 245 HLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEI 304
Query: 313 SDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRN 370
D + + + L+ ++ LN + ++TD GL ++ L LT LD+ +TD G L
Sbjct: 305 GDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSK 364
Query: 371 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSL 426
L+SL + G G+ D G+ + LSSL +L+LS + +K L I +G++G V+
Sbjct: 365 LNRLKSLYLGGCSGIRDEGIAALSHLSSLVILDLSNCRQVGNKALLGIDDGTGVSGAVAH 424
Query: 427 NV 428
V
Sbjct: 425 QV 426
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 166/319 (52%), Gaps = 14/319 (4%)
Query: 55 QGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSN-LTSL 111
Q L V+L+G S +TD + L + S L S+ C Q++D ++ L SN LTS+
Sbjct: 84 QFPHLKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSV 143
Query: 112 SFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCN--C 167
+ ++ +G+ A A L L L+L C+++ G+ L L L++LN+ +CN
Sbjct: 144 NLGYCKVVSDEGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGA 203
Query: 168 ITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLS 225
+TD + L+ +T+L SL +S CS++TD GI+ L L KL L + VT +L+
Sbjct: 204 LTDGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALA 263
Query: 226 ALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLEL 283
L +L L++ C ++D G E L S NL C IGD ++ L ++ L
Sbjct: 264 PLVNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNF 323
Query: 284 SDT-QVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTG 340
+V GLR ++ L NL S+++ S ++D L +L+ L+ LKSL L I D G
Sbjct: 324 MKCGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEG 383
Query: 341 LAALTSLTGLTHLDLFGAR 359
+AAL+ L+ L LDL R
Sbjct: 384 IAALSHLSSLVILDLSNCR 402
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 163/321 (50%), Gaps = 19/321 (5%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK--LTLLNLEG 213
L+ +N+ C+ +TD ++ L+ L+ L S+ + C +VTD I L Q LT +NL
Sbjct: 88 LKEVNLTGCSSLTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGY 147
Query: 214 CPVTAACLDSLSALGS----LFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIG--- 265
C V + + ++A+ S L YLNL C Q+ D+G +RL NL++LNL C G
Sbjct: 148 CKVVSD--EGITAIASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALT 205
Query: 266 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGL 323
D G+ L + +L L LS+ +Q+ G+ LS L L + ++ G ++D LA L
Sbjct: 206 DGGISALAEVTSLTSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPL 265
Query: 324 SSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG 381
+L +L++ ITD G L + L +L + + I D+ ++ + +R L
Sbjct: 266 VNLVTLDVAGCYNITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMK 325
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLR 439
G +TD G++ I L +LT L++ N+TD+ L +S L L SL + S I G+
Sbjct: 326 CGKVTDRGLRSIAKLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLGGCSGIRDEGIA 385
Query: 440 HLKPLKNLRSLTLESCKVTAN 460
L L +L L L +C+ N
Sbjct: 386 ALSHLSSLVILDLSNCRQVGN 406
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 159/322 (49%), Gaps = 29/322 (9%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIA-SQGSSLLSVDLSGSDV-TDSGLIH 76
LT+ S+E + + L + L V DK + ++ SQ +SL SV+L V +D G+
Sbjct: 99 LTDESVEQLANLSGLTSVALKGCYQVTDKSIKLLTESQSNSLTSVNLGYCKVVSDEGITA 158
Query: 77 LK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINL 133
+ + S L L+ C Q+ D G+ L L NL +L+ N A+T G+ A A + +L
Sbjct: 159 IASNLSKLNYLNLRGCSQVGDNGIRALARLKNLQTLNLWYCNQGALTDGGISALAEVTSL 218
Query: 134 VKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L+L C+++ G+ +L L+KL L I +TD L+ L NL +L ++ C
Sbjct: 219 TSLNLSNCSQLTDEGISSLSTLVKLRHLEIANVGEVTDQGFLALAPLVNLVTLDVAGCYN 278
Query: 192 VTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS 249
+TD+G L KL NL C + A + +L + +LN +C +++D G +
Sbjct: 279 ITDAGTEVLVNFPKLASCNLWYCSEIGDATFQHMESLTKMRFLNFMKCGKVTDRGLRSIA 338
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR--------HLSGLT 300
+L NL SL++ SC + DEGL L+ L LK L L G SG+R HLS L
Sbjct: 339 KLRNLTSLDMVSCFNVTDEGLNELSKLNRLKSLYLG----GCSGIRDEGIAALSHLSSLV 394
Query: 301 NL------ESINLSFTGISDGS 316
L + N + GI DG+
Sbjct: 395 ILDLSNCRQVGNKALLGIDDGT 416
>gi|290974964|ref|XP_002670214.1| predicted protein [Naegleria gruberi]
gi|284083770|gb|EFC37470.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 145/276 (52%), Gaps = 2/276 (0%)
Query: 160 LNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+N+K+ + DS +K ++ + LKSL IS +++ D G ++ +++LT L++ +
Sbjct: 106 VNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYNRIGV 165
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ ++ + L L+++ + D+G + S L L SL+ ++ IGD+G +++ + +L
Sbjct: 166 VGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHL 225
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L +++ +G+ G R +S + L+S+++ I D + + + L SL++ +I
Sbjct: 226 TLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGV 285
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
G+ ++ + LT L++ G +I D GA + K L SL I + G K I ++ L
Sbjct: 286 EGVIPISEMKQLTSLEIGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQL 345
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + N + D+ ++ IS + L SL++ + I
Sbjct: 346 KSLYIGGN-QIGDEGVKFISEMKQLTSLDIGYNEIV 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 15/318 (4%)
Query: 6 ISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPG--VNDKW----MDVIA----S 54
IS+Q FN + L + F + + +LC+ Q+ VN K+ +D I +
Sbjct: 66 ISKQFFNVIKERSKLVIKFKQKFTETRI-ELCMKSQFMNSIVNLKFSRRLLDSIQVKFIT 124
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L S+D+S + + D G + + L SLD + +I G++ + + +LTSL
Sbjct: 125 EMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN-RIGVVGVKFINEMKHLTSLDI- 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G+K+ + L L LD G ++ + L L+I N I +
Sbjct: 183 SGNGIGDEGVKSISELKQLTSLDFNNNRIGDKGAKSISEMKHLTLLSIN-NNHIGAEGAR 241
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S + LKSL I +++ D G ++ +++LT L++ G + + +S + L L
Sbjct: 242 FISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDISGNEIGVEGVIPISEMKQLTSLE 301
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ Q+ D+G + S + L SLN+ + IG EG ++ + LK L + Q+G G++
Sbjct: 302 IGGNQIGDEGAKLISEMKQLISLNIYNNQIGIEGAKFISEMKQLKSLYIGGNQIGDEGVK 361
Query: 295 HLSGLTNLESINLSFTGI 312
+S + L S+++ + I
Sbjct: 362 FISEMKQLTSLDIGYNEI 379
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 31/179 (17%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA----------------- 365
++S+ +L R + + +T + L LD+ RI D GA
Sbjct: 102 MNSIVNLKFSRRLLDSIQVKFITEMKQLKSLDISENRIGDEGAKFISEMKQLTSLDIGYN 161
Query: 366 -------AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++ K+L SL+I G G+ D GVK I +L LT L+ + N + DK + IS
Sbjct: 162 RIGVVGVKFINEMKHLTSLDISGNGIGDEGVKSISELKQLTSLDFNNN-RIGDKGAKSIS 220
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+ L L+++N+ I + G R + +K L+SL++ + ++ N++K+L S D+
Sbjct: 221 EMKHLTLLSINNNHIGAEGARFISEMKQLKSLSIYNNQIGDEGAKFINEMKQLTSLDIS 279
>gi|283777859|ref|YP_003368614.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
gi|283436312|gb|ADB14754.1| serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Length = 1487
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 199/420 (47%), Gaps = 58/420 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL-------T 109
S L +DLS + +TD GL L S L+ L + +SD GLE L +L T
Sbjct: 743 SQLAELDLSSTKITDQGLTRLLALSKLERLYLSDN-SLSDNGLEQLAMAKSLRLLVASGT 801
Query: 110 SLSFRRNNAITAQGMKAF-----AGLINLVKLDL-ERCTR-----IHGGLVNLK------ 152
LS R + +TA + A + V L L ER R + G +V +
Sbjct: 802 MLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVVARREDL 861
Query: 153 --GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G +K+ ++ C I D D+KPL L +L+SL +S +K+T +G+A L GL L ++
Sbjct: 862 PIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLASLKSID 921
Query: 211 LEGCPVTAACLDSLSA---------------LGSLFYLNL-NRCQLSDDGCEKFSRLT-- 252
L P+T A +++L+A L + + L++ +C ++ D LT
Sbjct: 922 LGTLPLTTASVETLAAALPDCKIERREPADKLVARWVLSVGGKCTITSDESASQVELTSA 981
Query: 253 ---------NLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
++E +NL C IG D L ++ L NLK L L + + + L ++GL +L
Sbjct: 982 TTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDITDAQLTSIAGLKSL 1041
Query: 303 ESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
++LS T ++ ++ LA L L+ L L ++ L A+T+L L+HL L G +
Sbjct: 1042 SELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIEVA 1101
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGL 420
S + L+ L L++ GL+D + + LSSL L + +N LTD ELI+ +
Sbjct: 1102 PSDLSLLKKCPQLEWLDLSSTGLSDEASQQLVGLSSLRELAVPKN-PLTDAGQEELIAAM 1160
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 168/357 (47%), Gaps = 32/357 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L+G +V S L LK C L+ LD + +SD + L GLS+L L+ +N A
Sbjct: 1095 LAGIEVAPSDLSLLKKCPQLEWLDLS-STGLSDEASQQLVGLSSLRELAVPKNPLTDAGQ 1153
Query: 124 MKAFAGLIN--LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP------ 175
+ A + N +V L+ ++ +G ++L++ +T P
Sbjct: 1154 EELIAAMPNCHVVGDPLDPQRLAARWILEKRGTVELDT------GAVTSPKELPRDKCHV 1207
Query: 176 ----LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
L+ L NLK+ ++ I + G +L L L +T A L ++ L L
Sbjct: 1208 LAIDLAELANLKAAEV---------IQVIAGCSELESLRLSDTAITDADLAAIGKLKLLK 1258
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L L ++DDG K + L LE L++ I GL N +L+ L LS+T +
Sbjct: 1259 KLYLANLAITDDGLAKLAELELLEVLDVSGGRITGAGLANFRSASSLQELNLSNTMLTDP 1318
Query: 292 GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L ++ +T+L S+++S G+SD L+KLAGL+ L+SL L ++TD +L S L
Sbjct: 1319 NLAAIAPMTSLISLDMSACRGVSDAGLKKLAGLTQLRSLGLRGTKLTDAAAESLASYAKL 1378
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLS 404
LDL I DSG L + +LR L + +TD GV +KDL S++L+ S
Sbjct: 1379 EQLDLDSTSIGDSGVEKLLSLTSLRRLVLAKTSVTDGGVASLAKLKDLRSVSLVRTS 1435
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 194/442 (43%), Gaps = 39/442 (8%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L++D G VTDS L L+ L+ L I+D G+ L L +L LS R A
Sbjct: 673 ILAIDFEGRGVTDSDLASLELAPGLRQLSL-AATPITDTGIASLAKLKSLAKLSLART-A 730
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+++ A L L +LDL GL L L KLE L + N ++D+ ++ L+
Sbjct: 731 ITNKGLESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLS-DNSLSDNGLEQLAM 789
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L+ L S + +++ G L T + +G + L G+ + R
Sbjct: 790 AKSLRLLVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRG 849
Query: 239 QLSDDGCEKFS-RLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ + + L+ L +D G IGD+ L L L +L+ L LS T++ +GL
Sbjct: 850 NIVPVVARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLA 909
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT----------GLAAL 344
+L GL +L+SI+L ++ S+ LA ++L ++ R+ D G +
Sbjct: 910 NLHGLASLKSIDLGTLPLTTASVETLA--AALPDCKIERREPADKLVARWVLSVGGKCTI 967
Query: 345 TSLTGLTHLDLFGARI--------------------TDSGAAYLRNFKNLRSLEICGGGL 384
TS + ++L A D+ A + NL+SL + G +
Sbjct: 968 TSDESASQVELTSATTVLPEAAIHVEKINLTDCKIGPDAPLASIAELANLKSLLLVGSDI 1027
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
TDA + I L SL+ L+LS L++ L L L +S +++ L + L
Sbjct: 1028 TDAQLTSIAGLKSLSELSLSDTAVTAPAVNGLLAQLPQLQRLYLSGTKVDRGVLVAVTNL 1087
Query: 445 KNLRSLTLESCKVTANDIKRLQ 466
L L+L +V +D+ L+
Sbjct: 1088 PKLSHLSLAGIEVAPSDLSLLK 1109
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 187/411 (45%), Gaps = 37/411 (9%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 129
D+ L + + +NL+SL I+D L + GL +L+ LS + A+TA + A
Sbjct: 1005 DAPLASIAELANLKSL-LLVGSDITDAQLTSIAGLKSLSELSLS-DTAVTAPAVNGLLAQ 1062
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L +L L G LV + L KL L++ + SD+ L L+ L +S
Sbjct: 1063 LPQLQRLYLSGTKVDRGVLVAVTNLPKLSHLSLAGIE-VAPSDLSLLKKCPQLEWLDLSS 1121
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA----------------LGSLFYL 233
+ ++D L GL L L + P+T A + L A L + + L
Sbjct: 1122 TGLSDEASQQLVGLSSLRELAVPKNPLTDAGQEELIAAMPNCHVVGDPLDPQRLAARWIL 1181
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
D G +T+ + L D C + ++L L NLK E+ +
Sbjct: 1182 EKRGTVELDTGA-----VTSPKELPRDKCHVL---AIDLAELANLKAAEV---------I 1224
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ ++G + LES+ LS T I+D L + L LK L L ITD GLA L L L L
Sbjct: 1225 QVIAGCSELESLRLSDTAITDADLAAIGKLKLLKKLYLANLAITDDGLAKLAELELLEVL 1284
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ G RIT +G A R+ +L+ L + LTD + I ++SL L++S ++D
Sbjct: 1285 DVSGGRITGAGLANFRSASSLQELNLSNTMLTDPNLAAIAPMTSLISLDMSACRGVSDAG 1344
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
L+ ++GLT L SL + +++T A L L L L+S + + +++
Sbjct: 1345 LKKLAGLTQLRSLGLRGTKLTDAAAESLASYAKLEQLDLDSTSIGDSGVEK 1395
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 4/267 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
++ EG VT + L SL L L+L ++D G ++L +L L+L I ++G
Sbjct: 676 IDFEGRGVTDSDLASLELAPGLRQLSLAATPITDTGIASLAKLKSLAKLSLARTAITNKG 735
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L +L L L L+LS T++ GL L L+ LE + LS +SD L +LA SL+
Sbjct: 736 LESLARLSQLAELDLSSTKITDQGLTRLLALSKLERLYLSDNSLSDNGLEQLAMAKSLRL 795
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDA 387
L +++ G LT+ T + GA + A L L ++ G +
Sbjct: 796 LVASGTMLSERGHGVLTAALPQTEITWDGADMQRQVALVLLERGARLSVADMRGNIVPVV 855
Query: 388 GVKHIKDLSSLTLLNLS-QNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ + L +L + C + D L+ + L L SL +S ++IT AGL +L L
Sbjct: 856 ARREDLPIGRLKVLKVDFAGCRTIGDDDLKPLVALADLESLALSGTKITPAGLANLHGLA 915
Query: 446 NLRSLTLESCKVTANDIKRLQSRDLPN 472
+L+S+ L + +T ++ L + LP+
Sbjct: 916 SLKSIDLGTLPLTTASVETLAAA-LPD 941
>gi|320166208|gb|EFW43107.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1869
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 194/448 (43%), Gaps = 17/448 (3%)
Query: 17 SRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTDS 72
S +T +S AF L Y +N+ W+ I S ++L + L + +T
Sbjct: 68 SNQITSISSSAFTG-----LTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTV 122
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-- 130
+ LQ+L + + QI+ + GL+ L L + NN IT+ AF+GL
Sbjct: 123 PSSAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQL-YLYNNQITSISANAFSGLSK 180
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+N ++L+ + I GL L L + + N IT +GLT L++L + +
Sbjct: 181 LNTLQLNNNWLSAIPSSA--FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQTLYLYNN 237
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
++ I GL L L L+ +T ++ S L L L+L LS F+
Sbjct: 238 QIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTG 297
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
LT L L LD+ I TGL L+ L L + Q+ + SGL L+ + L
Sbjct: 298 LTALTQLRLDTNQITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTN 357
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+ +GLS+L +L L ++ +A T LT LT L L+ +IT ++
Sbjct: 358 QITTVPANAFSGLSALNTLQLSNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPSSAFTG 417
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L++L + + + L++L L L N +T + SGL+ L +L ++N
Sbjct: 418 LTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNN-QITSISANAFSGLSKLNTLQLNN 476
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ +++ L L L L + ++T
Sbjct: 477 NWLSAIPSSAFTGLTALTQLLLYNNQIT 504
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 157/370 (42%), Gaps = 35/370 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ GL+ L L N IT AFAG+ +LV+L L RI VN
Sbjct: 766 QITTVAANAFTGLTALVQLQLYGNQ-ITTISASAFAGMSSLVQLYL-YSNRITAIFVNAF 823
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLKGLQKLTL 208
GL L L+I N IT +GLT + L + S S V S L LQ L L
Sbjct: 824 TGLTHLSLLDIS-NNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL 882
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
N + +T+ +++ ++L +L L L Q++ FS L+ L L L++ +
Sbjct: 883 YNNQ---ITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIP 939
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
TGL L L+L + Q+ + +GLT L ++L I+ S AGL++L++
Sbjct: 940 SSAFTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQA 999
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L+ IT A LT L LDL G++IT A
Sbjct: 1000 LYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPA----------------------- 1036
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
L +L LNL N L+ +GLT L L + +RIT+ L L
Sbjct: 1037 -NVFSSLPALAQLNLYNNW-LSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALV 1094
Query: 449 SLTLESCKVT 458
L L+S ++T
Sbjct: 1095 QLFLQSNQIT 1104
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 165/367 (44%), Gaps = 5/367 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ L GLS LT L NN IT+ F+GL L L L T I L N
Sbjct: 646 QITTIPSSALTGLSALTQL-LLYNNRITSVPANGFSGLTALTDLRLFNNT-ITSILANAF 703
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL KL L++ N +T SGLT L L + + ++ + GL L L L
Sbjct: 704 TGLTKLTYLDLS-LNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYL 762
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+T ++ + L +L L L Q++ F+ +++L L L S I +
Sbjct: 763 YNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNA 822
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
TGL +L L++S+ Q+ S +GLT + ++L +S GL++L++L L
Sbjct: 823 FTGLTHLSLLDISNNQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL 882
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
QIT + A TSLT L L L+G +IT A+ L L++ L+
Sbjct: 883 YNNQITSVVVNAFTSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSA 942
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L++LT L L N +T +GLT L L++ ++IT+ L L++L
Sbjct: 943 FTGLTALTQLQLYNN-QITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALY 1001
Query: 452 LESCKVT 458
L + +T
Sbjct: 1002 LNNNTIT 1008
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 154/350 (44%), Gaps = 3/350 (0%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L+ + L G+ +T S+L L + + +I+ + GL++L+ L N
Sbjct: 779 TALVQLQLYGNQITTISASAFAGMSSLVQL-YLYSNRITAIFVNAFTGLTHLSLLDIS-N 836
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT+ AF GL + +L L + GL L++L + + N IT +
Sbjct: 837 NQITSLPANAFTGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALWL-YNNQITSVVVNAF 895
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L LQ+ +++T + GL KL+LL L ++A + + L +L L L
Sbjct: 896 TSLTALVQLQLYGNQITTIPASAFSGLSKLSLLQLNNNWLSAIPSSAFTGLTALTQLQLY 955
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++ F+ LT L L+L I GL L+ L L++ + +
Sbjct: 956 NNQITTVPSSAFTGLTALTQLSLYGNQITTISASAFAGLTALQALYLNNNTITTIAANAF 1015
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+GLT L ++LS + I+ + L +L LNL ++ +A T LT LT L ++
Sbjct: 1016 AGLTALNWLDLSGSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMY 1075
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
G RIT A L L + +T LS LT L LS N
Sbjct: 1076 GNRITTISANAFTGLNALVQLFLQSNQITTISASAFTGLSLLTQLYLSNN 1125
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 178/422 (42%), Gaps = 17/422 (4%)
Query: 20 LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T V AF ALQ L L N++ + V + S L ++ + D +
Sbjct: 311 ITTVPSSAFTGLTALQTLYL-----YNNQIITVATNAFSGLAALQVLRLDTNQITTVPAN 365
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR-----GLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
S L +L+ +Q+S+ L + GL+ LT L NN IT AF GL L
Sbjct: 366 AFSGLSALN---TLQLSNNWLSAIPSSAFTGLTALTQLQLY-NNQITTVPSSAFTGLTAL 421
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L + GL L L + + N IT SGL+ L +LQ++ + ++
Sbjct: 422 QTLYLYNNQIATVAINAFSGLTALVQLYL-YNNQITSISANAFSGLSKLNTLQLNNNWLS 480
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
+ GL LT L L +T + + L +L +L L Q++ FS LT
Sbjct: 481 AIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTA 540
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L L LD+ I +GL L L L + + + +GLT L + L I+
Sbjct: 541 LVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQIT 600
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+GL++L L L QIT A + LT L L L+G +IT ++ L
Sbjct: 601 TVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSA 660
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + +T L++LT L L N +T +GLT L L++S +++
Sbjct: 661 LTQLLLYNNRITSVPANGFSGLTALTDLRLFNNT-ITSILANAFTGLTKLTYLDLSLNQL 719
Query: 434 TS 435
TS
Sbjct: 720 TS 721
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 124/446 (27%), Positives = 185/446 (41%), Gaps = 19/446 (4%)
Query: 20 LTEVSLEAFRD-CALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTDSGL 74
+T V AF AL L L ++ W+ I S ++L + L + +T
Sbjct: 359 ITTVPANAFSGLSALNTLQL------SNNWLSAIPSSAFTGLTALTQLQLYNNQITTVPS 412
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--IN 132
+ LQ+L + + QI+ + GL+ L L + NN IT+ AF+GL +N
Sbjct: 413 SAFTGLTALQTL-YLYNNQIATVAINAFSGLTALVQL-YLYNNQITSISANAFSGLSKLN 470
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
++L+ + I GL L L + + N IT +GLT L+ L + +++
Sbjct: 471 TLQLNNNWLSAIPSSA--FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQI 527
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
I GL L L L+ +T ++ S L L L+L LS F+ LT
Sbjct: 528 ATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLT 587
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L L LD+ I +GL L L L + Q+ + SGLT L + L I
Sbjct: 588 ALTQLRLDTNQITTVPANAFSGLTALLYLYLYNNQITTVPANAFSGLTALVQLQLYGNQI 647
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+ L GLS+L L L +IT + LT LT L LF IT A
Sbjct: 648 TTIPSSALTGLSALTQLLLYNNRITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLT 707
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L L++ LT L++LT L L N L+ +GLT L+ L + N++
Sbjct: 708 KLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALLYLYLYNNQ 766
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVT 458
IT+ L L L L ++T
Sbjct: 767 ITTVAANAFTGLTALVQLQLYGNQIT 792
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 167/403 (41%), Gaps = 35/403 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV--KLDLERCTRIHGGLVN 150
QI+ GL+ L L + NN I + AF+GL LV +LD + T +
Sbjct: 502 QITTVPSSAFTGLTALQFL-YLYNNQIATVAINAFSGLTALVQLRLDTNQITTVPANA-- 558
Query: 151 LKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
GL KL +L++ W + I S +GLT L L++ +++T GL L
Sbjct: 559 FSGLSKLNTLHLYNNWLSAIPSSA---FTGLTALTQLRLDTNQITTVPANAFSGLTALLY 615
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L L +T ++ S L +L L L Q++ + L+ L L L + I
Sbjct: 616 LYLYNNQITTVPANAFSGLTALVQLQLYGNQITTIPSSALTGLSALTQLLLYNNRITSVP 675
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSS 325
+GL L L L + + S +GLT L ++LS T I G+ L L+
Sbjct: 676 ANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQ 735
Query: 326 LKSLN--LDA-------------------RQITDTGLAALTSLTGLTHLDLFGARITDSG 364
L N L A QIT A T LT L L L+G +IT
Sbjct: 736 LLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTIS 795
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A+ +L L + +T V L+ L+LL++S N +T +GLT +
Sbjct: 796 ASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLDISNN-QITSLPANAFTGLTAMT 854
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L++ N+ +++ L L++L L + ++T+ + S
Sbjct: 855 QLSLYNNSLSAVPSSAFTGLTALQALWLYNNQITSVVVNAFTS 897
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 4/245 (1%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T+L L +T+ + + L +L YL LN LS F+ LT L L L + I
Sbjct: 62 TILYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITT 121
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
TGL L+ L L + Q+ + + SGLT L + L I+ S +GLS L
Sbjct: 122 VPSSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKL 181
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+L L+ ++ +A T LT LT L L+ +IT ++ L++L + +
Sbjct: 182 NTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQIAT 241
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN---SRITSAGLRHLKP 443
+ L++L L L N +T SGL+ L +L++ N S I S+ L
Sbjct: 242 VAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTA 300
Query: 444 LKNLR 448
L LR
Sbjct: 301 LTQLR 305
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 118/268 (44%), Gaps = 10/268 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLE- 158
GL+ L +L + NN IT+ + AF L LV+L L + T I GL KL
Sbjct: 871 FTGLTALQAL-WLYNNQITSVVVNAFTSLTALVQLQLYGNQITTIPASA--FSGLSKLSL 927
Query: 159 -SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
LN W + I S +GLT L LQ+ +++T + GL LT L+L G +T
Sbjct: 928 LQLNNNWLSAIPSSA---FTGLTALTQLQLYNNQITTVPSSAFTGLTALTQLSLYGNQIT 984
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+ + L +L L LN ++ F+ LT L L+L I + L
Sbjct: 985 TISASAFAGLTALQALYLNNNTITTIAANAFAGLTALNWLDLSGSQITSIPANVFSSLPA 1044
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L L + + + +GLT L + + I+ S GL++L L L + QIT
Sbjct: 1045 LAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRITTISANAFTGLNALVQLFLQSNQIT 1104
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGA 365
+A T L+ LT L L +IT A
Sbjct: 1105 TISASAFTGLSLLTQLYLSNNQITTISA 1132
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 25/298 (8%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L +S +++T + GL LT L L ++A + + L +L L L Q++
Sbjct: 64 LYLSSNQITSISSSAFTGLTALTYLQLNNNWLSAIPSSAFTGLTALTQLQLYNNQITTVP 123
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
F+ LT L++L L + I + +GL L L L + Q+ S SGL+ L +
Sbjct: 124 SSAFTGLTALQTLYLYNNQIATVAINAFSGLTALVQLYLYNNQITSISANAFSGLSKLNT 183
Query: 305 INL-----------SFTG-------------ISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+ L +FTG I+ GL++L++L L QI
Sbjct: 184 LQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQTLYLYNNQIATVA 243
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ A + LT L L L +IT A L +L + L+ L++LT
Sbjct: 244 INAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQ 303
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L N +T +GLT L +L + N++I + L L+ L L++ ++T
Sbjct: 304 LRLDTN-QITTVPSSAFTGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQIT 360
>gi|344174745|emb|CCA86555.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
syzygii R24]
Length = 468
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R + I A+G + A L LD+
Sbjct: 74 ASLKELDLSRCRGPITAAGIAHLSRLP-LVRLNVR-DKRIGAEGARRLANHPTLTSLDVS 131
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L KL +L++ N I K L+ L SL IS + + + G
Sbjct: 132 NGRIGPEGARALADNTKLTTLSVS-HNRIGAEGAKALAASKTLTSLDISENGIGNEGACA 190
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L +LN+
Sbjct: 191 LATNAKLTTLNVNRNQIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 250
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ +G +G+ L L L + +G +G R L+ T+L ++++ GIS +
Sbjct: 251 ERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARALATNTSLTTLHIESNGISPAGAQA 310
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + + ++D+GA L K L +L+
Sbjct: 311 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDA 370
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ T L SL++ N+R+T AG+R
Sbjct: 371 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTRLASLDLRNNRVTKAGVR 429
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 430 ALLANRTLSSL 440
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAF 127
G L + L SLD +S+G G E R L++ LT+LS N I A+G KA
Sbjct: 115 GARRLANHPTLTSLD------VSNGRIGPEGARALADNTKLTTLSVSHNR-IGAEGAKAL 167
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L LD+ + G L KL +LN+ N I K L+ L SL I
Sbjct: 168 AASKTLTSLDISENGIGNEGACALATNAKLTTLNVNR-NQIGVEGAKALAAGEALTSLDI 226
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D G+ L +LT LN+E V A + +L+A +L L ++ + D G
Sbjct: 227 GGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNTIGDAGARA 286
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ T+L +L+++S GI G L L L L +G +G + S T L S+++
Sbjct: 287 LATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSV 346
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+G+SD LA +L +L+ I D G AL + LT LD+ I ++GA
Sbjct: 347 RRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARA 406
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L L SL++ +T AGV+ + L++ TL +L + N K +E
Sbjct: 407 LAANTRLASLDLRNNRVTKAGVRAL--LANRTLSSLGVSFNYCSKQIE 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 216 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 274
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 275 -DSNTIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 332
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + S ++D+G L + LT L+ + A +L+A +L L
Sbjct: 333 QAWSANTTLISLSVRRSGLSDAGATTLAASKTLTTLDAGDNTIRDAGARALAANRTLTTL 392
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNL 259
++ ++ + G + T L SL+L
Sbjct: 393 DVRSNEIENAGARALAANTRLASLDL 418
>gi|290991272|ref|XP_002678259.1| predicted protein [Naegleria gruberi]
gi|284091871|gb|EFC45515.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 160/311 (51%), Gaps = 10/311 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D++ + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ ++S+ L L LN+ ++ +G + +L+NL L++ IG EG + L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NLK L SD ++G G + + + L S+ L I + + ++ LS L L+L +
Sbjct: 165 KNLKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNE 224
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I D G L L LT+LDL I+D +G L N ++R +I D G+++I
Sbjct: 225 IGDEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKI-----EDKGIRNI 279
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LS L L L N +T + +++S + L +L++S + I G + + L L+ L +
Sbjct: 280 CQLSGLQSLRLCANP-ITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDI 338
Query: 453 ESCKVTANDIK 463
+ ++TAN +K
Sbjct: 339 STKRITANGVK 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 53/369 (14%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+K L NL LD I G L+ +G + + L N
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEG-------------------GQYIGELKN 166
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK+L S +++ G + + +LT L L G + +S L L L+L + ++
Sbjct: 167 LKTLVASDNELGVLGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLSQLTDLDLGKNEIG 226
Query: 242 DDGCE---KFSRLTNLESL-----NLDSCG--------------IGDEGLVNLTGLCNLK 279
D+G + K +LTNL+ + +L S G I D+G+ N+ L L+
Sbjct: 227 DEGFKLLAKLEKLTNLDLVSNNISDLSSTGQLGLLNCLDVRKNKIEDKGIRNICQLSGLQ 286
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + S G + LS + L ++++S T I D + +A L++LK L++ ++IT
Sbjct: 287 SLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITAN 346
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSS 397
G+ + L+ L LD+ I D G Y+ + L +L C GL G K + ++
Sbjct: 347 GVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQ 404
Query: 398 LTLLNLSQN 406
LT+L++ N
Sbjct: 405 LTVLDVKIN 413
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 155/340 (45%), Gaps = 29/340 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L +++ +++T G+ + SNL LD + + ++GG +++ L NL +L +
Sbjct: 117 SKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGG-QYIGELKNLKTL-VASD 174
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N + G K+ + L L L N I + K +
Sbjct: 175 NELGVLGAKSIGEMNQLTSLCL-------------------------IGNSIGNEGAKYI 209
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L+ L L + +++ D G L L+KLT NL+ + L S LG L L++
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLT--NLDLVSNNISDLSSTGQLGLLNCLDVR 267
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+ ++ D G +L+ L+SL L + I EG L+ + L L +S+T + G + +
Sbjct: 268 KNKIEDKGIRNICQLSGLQSLRLCANPITSEGAKILSEMVQLTNLSISETHIDDEGAKFI 327
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT L+ +++S I+ ++ + LS L SL+++ I D G+ ++ + L L+
Sbjct: 328 AQLTTLKYLDISTKRITANGVKFICQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAV 387
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
I GA L + L L++ + G++ +++++
Sbjct: 388 YCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGIQLLENIA 427
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 30/201 (14%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ NL LN+D I ++ + L+G+ +LK L S +++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI---------------------- 38
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
K + L L LN++ ++ D + ++ +L LT L+L G I+ + ++
Sbjct: 39 -------DKFSRLDQLTELNVNWNRLKDEDVESIGNLKNLTLLELSGNEISKNSMKFISQ 91
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L + + + G+ I +LS LT LN+ N N+T + ++LI L+ L L++S
Sbjct: 92 LSELTKLSVGLNSIENEGINSIINLSKLTCLNII-NANITSEGVKLIGKLSNLTILDISG 150
Query: 431 SRITSAGLRHLKPLKNLRSLT 451
+ I + G +++ LKNL++L
Sbjct: 151 NLIGAEGGQYIGELKNLKTLV 171
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 29/252 (11%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L +DL +++ D G L L +LD +S+ +S+L+S
Sbjct: 210 SQLSQLTDLDLGKNEIGDEGFKLLAKLEKLTNLDL-----VSN-------NISDLSS--- 254
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
T Q GL+N LD+ + G+ N+ L L+SL + N IT
Sbjct: 255 ------TGQ-----LGLLNC--LDVRKNKIEDKGIRNICQLSGLQSLRL-CANPITSEGA 300
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K LS + L +L IS + + D G ++ L L L++ +TA + + L L L
Sbjct: 301 KILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISL 360
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++N + D+G SR+ LE+LN C IG EG L+ + L L++ ++ G+
Sbjct: 361 DINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVKINRIPGEGI 420
Query: 294 RHLSGLTNLESI 305
+ L + +S+
Sbjct: 421 QLLENIARFKSL 432
>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis]
gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]
Length = 597
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 178/382 (46%), Gaps = 45/382 (11%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
R NA+ A+ M L L+L C +I L +L G+ L+ L++ +TD+
Sbjct: 70 LRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLSRSVKVTDA 129
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++ L +++L+ L+I + +T G+A L L L++L+L G PVT L SL L L
Sbjct: 130 GIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSSLQVLTKLE 189
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD------ 285
YL+L +S++G L LNL G + L + +L+ L LS+
Sbjct: 190 YLDLWGSNISNNGVAVLQLFPKLSFLNL-----GWTSVTRLPSMLSLEYLNLSNCTIESL 244
Query: 286 ------------TQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK--- 327
T+V G++ N+E LSF +S+ SL+ L +K
Sbjct: 245 LEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMKMLE 304
Query: 328 SLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLT 385
L+L + + D + A+ + LT+L+L R+T +G A L + L L + +
Sbjct: 305 HLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHALVD 364
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTD------------KTLELISGLTGLVSLNVSNSRI 433
D + +I +SSL +++LS N N+ +L+ + GL+GL SLN+ ++++
Sbjct: 365 DFALSYIGMMSSLKVVDLS-NTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHTQV 423
Query: 434 TSAGLRHLKPLKNLRSLTLESC 455
A + + + L L+L+S
Sbjct: 424 RDAAVAPVSSFQELSHLSLKSA 445
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/408 (26%), Positives = 175/408 (42%), Gaps = 69/408 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T S L L ++L+ LD + ++++D G+ HL +S+L L +TA+G+
Sbjct: 101 ITSSALWSLTGMTSLKELDLSRSVKVTDAGIRHLLSISSLEILRIP-ETGLTAKGVALLT 159
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL LDL L +L+ L KLE L++ W + I+++ + L L L +
Sbjct: 160 SLTNLSVLDLGGLPVTDMALSSLQVLTKLEYLDL-WGSNISNNGVAVLQLFPKLSFLNLG 218
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGC---------------PVTAACLD----------- 222
+ VT L + L LNL C P+T L
Sbjct: 219 WTSVTR-----LPSMLSLEYLNLSNCTIESLLEGDGDGDKAPLTKVILSGATFPNEAEAF 273
Query: 223 -------------SLSALGSLFYLN---------LNRCQLSDDGCEKFSRL-TNLESLNL 259
S S+L ++L+ L+ + DD E + + NL +LNL
Sbjct: 274 YNIEPRFLSFLDVSNSSLQGFYFLHDMKMLEHLDLSSTMMGDDAIEAVACIGANLTNLNL 333
Query: 260 DSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---- 314
+ GL L + L+ L LS V L ++ +++L+ ++LS T I
Sbjct: 334 SKTRVTSAGLAILAEHVPKLEYLSLSHALVDDFALSYIGMMSSLKVVDLSNTNIKGFIRQ 393
Query: 315 --------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
SL+ L GLS L+SLNL+ Q+ D +A ++S L+HL L A + D
Sbjct: 394 MGVETNLIPSLKALQGLSGLQSLNLEHTQVRDAAVAPVSSFQELSHLSLKSASLADETLY 453
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+L + L SL I LT+ G+ + +L +L+L LT++ +
Sbjct: 454 HLSSLSKLTSLVIGDAVLTNCGLDLFRPPVALKMLDLRGCWLLTEEAI 501
>gi|290994522|ref|XP_002679881.1| leucine rich repeat protein [Naegleria gruberi]
gi|284093499|gb|EFC47137.1| leucine rich repeat protein [Naegleria gruberi]
Length = 340
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 3/247 (1%)
Query: 224 LSALGSLFYLNLNRCQLSDD-GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+ + L +L++ C + DD G + S L L LN+ IG EG L+ L L L+
Sbjct: 95 IGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLK 154
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNLDARQITDTGL 341
++ ++G G + +S + L ++N+S I + ++ +SS L L++ + QI++ GL
Sbjct: 155 INSNEIGPEGAKSISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGL 214
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ ++ LT LD G I D GA YL KNLR L+I + D G I L LT L
Sbjct: 215 KFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNL 274
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
N+S N + ++ +S + L LN+SN+ I AG ++L ++ L L + ++ ++
Sbjct: 275 NISFN-EIGNQGAIYLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRNYLSVSE 333
Query: 462 IKRLQSR 468
+ L +
Sbjct: 334 LALLNKK 340
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 114/220 (51%), Gaps = 1/220 (0%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+CS + D G Y+ L +LT LN+ + LS L L L +N ++ +G +
Sbjct: 108 NCSMIDDKGAKYVSALNQLTFLNISQNNIGPEGAKYLSKLDQLTNLKINSNEIGPEGAKS 167
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
S + L +LN+ + IG EG +++ + L L++S Q+ + GL+ +S ++ L S++
Sbjct: 168 ISDMKQLTTLNISNNMIGMEGAKSISEISSQLTILDISSNQISNEGLKFISEMSQLTSLD 227
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ I D + L+ L +L+ L++ + D G ++ L LT+L++ I + GA
Sbjct: 228 TNGNNIGDKGAKYLSELKNLRVLDISKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAI 287
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
YL + L L I + AG K++ ++ LT LN+++N
Sbjct: 288 YLSKMEKLTILNISNNLIGPAGAKYLGEMQQLTKLNINRN 327
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 142/313 (45%), Gaps = 29/313 (9%)
Query: 22 EVSLEAFRDCALQDL--CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-------S 72
E+ E R C QD + Y V+ +WM+VI L + + D S
Sbjct: 16 EIIYEILRSCD-QDFKFIVMNYALVSKQWMNVIQWYSKLELKFEKKREHIDDLLPSRFLS 74
Query: 73 GLIHLKDC----------------SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ + C L LD C I D G +++ L+ LT L+ +N
Sbjct: 75 NIVQFRVCVERKPGEMFYQIIGKMKQLTFLDIRNCSMIDDKGAKYVSALNQLTFLNISQN 134
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I +G K + L L L + G ++ + +L +LNI N I K +
Sbjct: 135 N-IGPEGAKYLSKLDQLTNLKINSNEIGPEGAKSISDMKQLTTLNIS-NNMIGMEGAKSI 192
Query: 177 SGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S ++ L L IS +++++ G+ ++ + +LT L+ G + LS L +L L++
Sbjct: 193 SEISSQLTILDISSNQISNEGLKFISEMSQLTSLDTNGNNIGDKGAKYLSELKNLRVLDI 252
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++ + D+G + S+L L +LN+ IG++G + L+ + L L +S+ +G +G ++
Sbjct: 253 SKNFVYDNGADLISKLPQLTNLNISFNEIGNQGAIYLSKMEKLTILNISNNLIGPAGAKY 312
Query: 296 LSGLTNLESINLS 308
L + L +N++
Sbjct: 313 LGEMQQLTKLNIN 325
>gi|46447466|ref|YP_008831.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401107|emb|CAF24556.1| hypothetical protein pc1832 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 302 LESINLSFTG-ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGA- 358
+E++N S ++D L L +LK L+L + TD GLA LT LT L HLDL G
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCF 284
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
R+TD+G A+L L+ L + G LTDAG+ H+K L +L L+L + NLTD L +
Sbjct: 285 RVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLR 344
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQS 467
L L LN++N IT GL HL PL L+ L L C K+T N + RL+S
Sbjct: 345 PLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRS 395
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 4/223 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+ +D+TD+ L+ LK+C NL+ LD C +D GL HL L+ L L +T G+
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+ L+ L L+L C GLV+LK L+ L+ L++ C +TD+ + L L L+
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLS 241
L ++ C +TD G+A+L L L L+L C +T L L +L +L +LNL+ C L+
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 283
D G L L+ L+L +C + D GL + L L+L
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 10/210 (4%)
Query: 254 LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTG 311
+E+LN ++ + D L+ L NLK L+L + +GL HL+ LT L+ ++L TG
Sbjct: 225 IEALNFSNNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDL--TG 282
Query: 312 ---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAY 367
++D L L+ L +L+ LNL +TD GL L L L HLDL +TD+G A+
Sbjct: 283 CFRVTDTGLAHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAH 342
Query: 368 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
LR L+ L + +TD G+ H+ L +L L+L Q LT L + L L L
Sbjct: 343 LRPLVALQHLNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHL 402
Query: 427 NVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
N+S S +T AGL HL+PL L+ L L +C
Sbjct: 403 NLSGCSYLTDAGLAHLRPLVALQHLDLANC 432
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L ++L G D+TD+GL+HLK L+ LD C ++D GL HLR L L L+
Sbjct: 299 ALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQHLNLTNCE 358
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT G+ L+ L LDL +C ++ G GL L+ L+ L+ LN+ C+ +TD+ + L
Sbjct: 359 NITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLTDAGLAHL 418
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNL 211
L L+ L ++ C ++TD+G+A+ K L T L+L
Sbjct: 419 RPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDL 454
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 107/213 (50%), Gaps = 6/213 (2%)
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 293
N L+D NL+ L+L C D GL +LT L L+ L+L+ +V +GL
Sbjct: 232 NNADLTDAHLLALKNCKNLKVLDLQECWNFTDAGLAHLTPLTALQHLDLTGCFRVTDTGL 291
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTH 352
HLS L L+ +NL ++D L L L +LK L+L +TD GLA L L L H
Sbjct: 292 AHLSPLVALQHLNLIGCDLTDAGLVHLKPLIALKHLDLMRCWNLTDAGLAHLRPLVALQH 351
Query: 353 LDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L ITD G A+L L+ L++ LT G+ ++ L +L LNLS LT
Sbjct: 352 LNLTNCENITDVGLAHLTPLVALKHLDLMQCWKLTGNGLARLRSLVALQHLNLSGCSYLT 411
Query: 411 DKTLELISGLTGLVSLNVSN-SRITSAGLRHLK 442
D L + L L L+++N +T AGL H K
Sbjct: 412 DAGLAHLRPLVALQHLDLANCYELTDAGLAHFK 444
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L ++LSG S +TD+GL HL+ LQ LD C +++D GL H + L+ T L R
Sbjct: 398 ALQHLNLSGCSYLTDAGLAHLRPLVALQHLDLANCYELTDAGLAHFKFLAATTHLDLR 455
>gi|290972682|ref|XP_002669080.1| predicted protein [Naegleria gruberi]
gi|284082622|gb|EFC36336.1| predicted protein [Naegleria gruberi]
Length = 434
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 158/319 (49%), Gaps = 24/319 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L LN+ W N + D D+K + L NL L++S ++++ + + ++ L +LT L++
Sbjct: 46 QLTELNVNW-NRLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNS 104
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ ++S+ L L LN+ ++ +G + +L+NL L++ IG EG + L
Sbjct: 105 IENEGINSIINLSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNLIGAEGGQYIGEL 164
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NLK L SD ++G G + + + L S+ L I + + ++ L+ L L+L +
Sbjct: 165 NNLKILVASDNELGVFGAKSIGEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNE 224
Query: 336 ITDTGLAALTSLTGLTHLDLFG----------------------ARITDSGAAYLRNFKN 373
I + G LT L LT+LD+ +I D+G +
Sbjct: 225 IGNEGFKLLTKLEKLTNLDMVSNNISDLSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGG 284
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L +L +CG +T G K + ++ LT L++S+ ++ D+ + I+ LT L L++S RI
Sbjct: 285 LNALRLCGNPITSEGAKILSEMVQLTNLSISE-THIDDEGAKFIAQLTTLKYLDISTKRI 343
Query: 434 TSAGLRHLKPLKNLRSLTL 452
T+ G++ + L L SL +
Sbjct: 344 TANGVKFICQLSKLISLDI 362
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 19/349 (5%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++LSG++++ + + + S L L I + G+ + LS LT L+ N IT+
Sbjct: 74 LELSGNEISKNSMKFISQLSELTKLSVGLN-SIENEGINSIINLSKLTCLNIINAN-ITS 131
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM-----KPL 176
+G+K L NL LD I G L+ +G + LN +D+++ K +
Sbjct: 132 EGVKLIGKLSNLTILD------ISGNLIGAEGGQYIGELNNLKILVASDNELGVFGAKSI 185
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL + + + + G Y+ L +LT L+L + L+ L L L++
Sbjct: 186 GEMNQLTSLCLIGNSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMV 245
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+SD +L L L++ I D G+ N+ L L L L + S G + L
Sbjct: 246 SNNISD--LSSIGQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITSEGAKIL 303
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S + L ++++S T I D + +A L++LK L++ ++IT G+ + L+ L LD+
Sbjct: 304 SEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFICQLSKLISLDIN 363
Query: 357 GARITDSGAAYLRNFKNLRSLE--ICGGGLTDAGVKHIKDLSSLTLLNL 403
I D G Y+ + L +L C GL G K + ++ LT+L++
Sbjct: 364 WNNIGDEGVLYISRMQQLETLNAVYCNIGL--EGAKLLSEMEQLTVLDV 410
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 149/323 (46%), Gaps = 29/323 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L +D+SG+ + G ++ + +NL+ L + ++ G + + ++ LTSL
Sbjct: 141 SNLTILDISGNLIGAEGGQYIGELNNLKILVASDN-ELGVFGAKSIGEMNQLTSLCLI-G 198
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N+I +G K + L L LDL R + G L L KL +L++ N SD+ +
Sbjct: 199 NSIGNEGAKYISQLTQLTDLDLGRNEIGNEGFKLLTKLEKLTNLDMVSNNI---SDLSSI 255
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L L + +K+ D+GI + L L L L G P+T+
Sbjct: 256 GQLGLLNCLDVRKNKIEDTGIRNICQLGGLNALRLCGNPITS------------------ 297
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+G + S + L +L++ I DEG + L LK L++S ++ ++G++ +
Sbjct: 298 ------EGAKILSEMVQLTNLSISETHIDDEGAKFIAQLTTLKYLDISTKRITANGVKFI 351
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L+ L S+++++ I D + ++ + L++LN I G L+ + LT LD+
Sbjct: 352 CQLSKLISLDINWNNIGDEGVLYISRMQQLETLNAVYCNIGLEGAKLLSEMEQLTVLDVK 411
Query: 357 GARITDSGAAYLRNFKNLRSLEI 379
RI G L N +SL +
Sbjct: 412 IKRIPGEGIQLLENIARFKSLVV 434
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 6/202 (2%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ NL LN+D I ++ + L+G+ +LK L S +++ S L L +N+++
Sbjct: 1 MKNLTYLNIDWNKISEKSKIILSGMKHLKILAASGSEI-----DKFSRLDQLTELNVNWN 55
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ D ++ + L +L L L +I+ + ++ L+ LT L + I + G + N
Sbjct: 56 RLKDEDVKSIGNLKNLTLLELSGNEISKNSMKFISQLSELTKLSVGLNSIENEGINSIIN 115
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L I +T GVK I LS+LT+L++S N + + + I L L L S+
Sbjct: 116 LSKLTCLNIINANITSEGVKLIGKLSNLTILDISGNL-IGAEGGQYIGELNNLKILVASD 174
Query: 431 SRITSAGLRHLKPLKNLRSLTL 452
+ + G + + + L SL L
Sbjct: 175 NELGVFGAKSIGEMNQLTSLCL 196
>gi|290994342|ref|XP_002679791.1| predicted protein [Naegleria gruberi]
gi|284093409|gb|EFC47047.1| predicted protein [Naegleria gruberi]
Length = 300
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 133/276 (48%), Gaps = 2/276 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL SL IS + + + G Y+ L LT+L++ G + A + +S + + L++ L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+G + S + L +L +++ I +EG ++GL L L + +G G +HLS L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L +N+ I D ++ + + L L++ I G ++ + L LD+ I
Sbjct: 124 QLTRLNIGENNIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCNI 183
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA + K L L I D G K I D+ LT L L NC+++D + +S +
Sbjct: 184 DPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELF-NCDISDIGAKCVSEM 242
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+ L +L++ + ++ G+R + +K L L++ S K
Sbjct: 243 SKLTNLDIGENNLSDEGVRAVSNMK-LMILSVSSSK 277
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 140/294 (47%), Gaps = 26/294 (8%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLTSL+ RN I +G K + L NL LD+ + G ++ + ++ +L++ N
Sbjct: 4 NLTSLNISRN-WIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVG-LN 61
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ K +S + L +L+I+ + + + G ++ GL++LT L
Sbjct: 62 NLGKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTEL----------------- 104
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
S+ + N+ D G + S L L LN+ IGDEG+ ++ + L L++S+
Sbjct: 105 --SIHFNNI-----GDVGTKHLSELKQLTRLNIGENNIGDEGVKHILEMKQLTDLDISNN 157
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ G ++SG+ L ++++ I +K++ + L LN+ Q D G ++
Sbjct: 158 NIRHKGSEYISGMNQLRILDINSCNIDPIGAQKISEMKQLTDLNIAWNQFGDEGAKFISD 217
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ LT L+LF I+D GA + L +L+I L+D GV+ + ++ + L
Sbjct: 218 MKQLTTLELFNCDISDIGAKCVSEMSKLTNLDIGENNLSDEGVRAVSNMKLMIL 271
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 1/181 (0%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL L +S +G G +++S L NL +++ I ++ + + +L++ +
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
G ++ + LT+L++ I + GA ++ K L L I + D G KH+ +L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSELK 123
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LT LN+ +N N+ D+ ++ I + L L++SN+ I G ++ + LR L + SC
Sbjct: 124 QLTRLNIGEN-NIGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN 182
Query: 457 V 457
+
Sbjct: 183 I 183
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 3/198 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L +++++ +++ + G + L L +F I D G +HL L LT L+
Sbjct: 72 SEMKQLTNLEINNNNIQEEGAKFISGLKQLTELSIHFN-NIGDVGTKHLSELKQLTRLNI 130
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G+K + L LD+ H G + G+ +L L+I CN I
Sbjct: 131 GENN-IGDEGVKHILEMKQLTDLDISNNNIRHKGSEYISGMNQLRILDINSCN-IDPIGA 188
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ +S + L L I+ ++ D G ++ +++LT L L C ++ +S + L L
Sbjct: 189 QKISEMKQLTDLNIAWNQFGDEGAKFISDMKQLTTLELFNCDISDIGAKCVSEMSKLTNL 248
Query: 234 NLNRCQLSDDGCEKFSRL 251
++ LSD+G S +
Sbjct: 249 DIGENNLSDEGVRAVSNM 266
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L SLN+ I + G ++ L LT LD+ G I +GA ++ K + +L + L
Sbjct: 4 NLTSLNISRNWIGEEGAKYISELDNLTILDIHGNDIVANGANHISKMKRITTLSVGLNNL 63
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
G K+I ++ LT L ++ N N+ ++ + ISGL L L++ + I G +HL L
Sbjct: 64 GKEGTKYISEMKQLTNLEINNN-NIQEEGAKFISGLKQLTELSIHFNNIGDVGTKHLSEL 122
Query: 445 KNLRSLTLESCKVTANDIKRL 465
K L L + + +K +
Sbjct: 123 KQLTRLNIGENNIGDEGVKHI 143
>gi|29823176|emb|CAD15503.2| probable lrr-gala family type III effector protein (gala 5)
[Ralstonia solanacearum GMI1000]
Length = 538
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 162/337 (48%), Gaps = 16/337 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQI 187
+L LDL RC G + G+ L L + N I + L+ L SL +
Sbjct: 145 SLKALDLSRCR----GSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNV 200
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 201 SNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARE 260
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ T L +L+ + GIG +G L L L + ++G +G+ L+ L ++N+
Sbjct: 261 LAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426
L L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTL 438
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
++S + I G + L + TL + V++NDIK
Sbjct: 439 DISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 470
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 128/469 (27%), Positives = 214/469 (45%), Gaps = 43/469 (9%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL--NLEGCPVTAACL 221
N I + K L+ L+SL +S +++ D G L +LT L N G V A
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARELAACTQLTTLDANRNGIGVDGAT- 283
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+L+A +L L + ++ D G + L +LN++S G+G +G+ L L L
Sbjct: 284 -ALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWL 342
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L +G++G L+ T+L +++L + I + LA + L +L+L I D G+
Sbjct: 343 RLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGV 402
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
AL++ L L + + D+ A L K L +L+I G G+ D G K + +LT L
Sbjct: 403 RALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTL 462
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++S N ++ + ++ LVSL++ N+R+ +G R L + L SL
Sbjct: 463 DVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 510
>gi|168052598|ref|XP_001778727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669846|gb|EDQ56425.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 643
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/478 (25%), Positives = 216/478 (45%), Gaps = 43/478 (8%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS--QGSS 58
MLP +++ ++FN L+ S L+ + F+ LQ++ L V+ +WM + +
Sbjct: 41 MLPSELAHELFNSLLQSHLLSATLIGLFQS-NLQEVNLSGEATVDGEWMAYLGGCRHLRA 99
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + D +T++ + L + ++ LD C +ISD + H+ L L
Sbjct: 100 LRATDCKA--LTNNAIRQLTGLTAMEELDLARCRKISDDAVPHILSFKMLRKLGLAETGL 157
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + GL LV LDL C L++ + L LE L++ W + +T+ + LS
Sbjct: 158 TTKGLLLL-PGLSRLVLLDLGGCPVTDADLISFQALGMLEHLDL-WGSKVTNMGARCLSS 215
Query: 179 LTNLKSLQISCSKVT----------------DSGIAYLKGLQKLTLLN---LEGCPVTAA 219
LK L ++ + VT D Y G +LL L G ++
Sbjct: 216 FKTLKYLNLAMTAVTAIPQLNSLLSLNLCNCDVESIYGDGTFSDSLLRELFLSGASLSLK 275
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC-NL 278
+ S S +L L+L +++D + F + L L+L + G+ +E ++ GL NL
Sbjct: 276 DVISGSNTRNLHLLDLASSRVND--LDAFVHIPKLAILDLRATGLTNELMLKFQGLGDNL 333
Query: 279 KCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+ ++LS T++ S G+ ++G N+E ++L+ T + D L L+SLNL ++
Sbjct: 334 RWIDLSYTKIDSEGVGAIAGHAPNVEQLSLNHTPVDDNVFIYLVHFPVLQSLNLGGSKVN 393
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
++ L +YL ++LR L++ G+ DA + +K+L
Sbjct: 394 GFMTVGSEEFQQISVL------------SYLEQLQHLRRLDMRYTGVGDAALHGLKNLVQ 441
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L+ L++ N +L+D+ L+ +S LV L + + IT+ GL KP L L L C
Sbjct: 442 LSHLHIHSN-SLSDECLQQLSSFPNLVCLGIGGATITADGLLSYKPPSLLEELDLTDC 498
>gi|300704275|ref|YP_003745878.1| leucine-rich-repeat type III effector protein (gala6) [Ralstonia
solanacearum CFBP2957]
gi|299071939|emb|CBJ43268.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CFBP2957]
Length = 519
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 145/477 (30%), Positives = 215/477 (45%), Gaps = 61/477 (12%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQGS 57
R++++++ N SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 2 REVNRELRN---ASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKALPP 55
Query: 58 SLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 56 GVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLSLT 113
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCN 166
+I + A A ++ LDL VN+ G L SLN+ N
Sbjct: 114 -GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLVSLNLH-NN 162
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 163 GIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRR 222
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
SL L+L+ +L D G + + +L SLN+ S IGD+G L LK L LS
Sbjct: 223 NTSLTELDLSTNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYN 282
Query: 287 QV---------GSSGLRHL------------SGL---TNLESINLSFTGISDGSLRKLAG 322
+ GS+ LR L S L T+L S++L I D R LA
Sbjct: 283 PIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALAT 342
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 343 SRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRN 402
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ G +H+ ++LT L+LS+N L + E +S T L +LNVS++ I AG R
Sbjct: 403 RIGPNGAQHLAKSATLTELDLSEN-RLGPEGAEALSLSTVLTTLNVSDNAIGEAGAR 458
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 162/402 (40%), Gaps = 46/402 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 105 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAPLVSLNLHNNGI 164
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 165 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT 224
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+G +L SL + +++ D G L L LNL P
Sbjct: 225 SLTELDLS-TNRLGDAGAQALAGSRSLTSLNVRSNEIGDDGTEALARNTTLKSLNLSYNP 283
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L +L L+L C + G +R T+L SL+L S IGD+
Sbjct: 284 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDD-------- 335
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
G R L+ L ++LS I D + LAG SL SLNL +
Sbjct: 336 ----------------GARALATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNE 379
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ D G AAL LT L+L RI +GA +L L L++ L G + +
Sbjct: 380 VDDDGAAALAQHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRLGPEGAEALSLS 439
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ LT LN+S N T L SL+ N+R+ AG
Sbjct: 440 TVLTTLNVSDNAIGEAGARAFAEKSTSLTSLDARNNRMGEAG 481
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 119/260 (45%), Gaps = 3/260 (1%)
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
A G++ L + G V+ A L L A L L+LN ++ +G + +L SL
Sbjct: 52 ALPPGVEHLDISRCTGRGVSNAGLAHL-ATRPLKSLSLNGIEIDAEGARLLATCASLTSL 110
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
+L C IGD L ++ L+LS +G G R L+ L S+NL GI D
Sbjct: 111 SLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAP-LVSLNLHNNGIGDEGA 169
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA +LKSLN I D G+ T LT L+L G I +GA LR +L L
Sbjct: 170 LALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNTSLTEL 229
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ L DAG + + SLT LN+ N + D E ++ T L SLN+S + I G
Sbjct: 230 DLSTNRLGDAGAQALAGSRSLTSLNVRSN-EIGDDGTEALARNTTLKSLNLSYNPIGFWG 288
Query: 438 LRHLKPLKNLRSLTLESCKV 457
L LR L L C +
Sbjct: 289 AGALGGSTTLRELDLRCCAI 308
>gi|290989200|ref|XP_002677229.1| predicted protein [Naegleria gruberi]
gi|284090835|gb|EFC44485.1| predicted protein [Naegleria gruberi]
Length = 308
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 118/235 (50%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K + L +L IS + + Y+ L KL LN+ G +T LS L L
Sbjct: 57 DCKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLN 116
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L+++ C++ +G + S + +L +LN+ S IG EG+ ++ GL L L++S+ ++G
Sbjct: 117 TLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEE 176
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G ++L + L ++++S + + ++ + L SL++ I G ++ +T LT
Sbjct: 177 GAKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLT 236
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L++ I G ++ N K L+ L I G + + G + I DL LT LN+ N
Sbjct: 237 KLNMNCCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENN 291
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 105/208 (50%), Gaps = 1/208 (0%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
C+ F + L +L++ + E + L L L ++ + G ++LS L L +
Sbjct: 58 CKIFEWMKQLTNLSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNT 117
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+++ I + L+ + L +LN+ + +I G+ + L+ LT LD+ +I + G
Sbjct: 118 LHIDNCEIGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEG 177
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A YLR + L +L++ L G+++I ++ LT L+++ N + + + IS +T L
Sbjct: 178 AKYLREMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNL-IGVEGAKHISEMTQLT 236
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN++ I G++H+ +K L+ L +
Sbjct: 237 KLNMNCCNIGVEGVKHIINMKQLKHLII 264
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 1/213 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL +LNI N IT K LS L L +L I ++ G YL ++ LT LN+
Sbjct: 90 KLINLNIN-GNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGSNR 148
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ + + L L +L+++ ++ ++G + + L +L++ + + +G+ ++ +
Sbjct: 149 IGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNLDVSTNALRQQGIEYISEM 208
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L ++ +G G +H+S +T L +N++ I ++ + + LK L +
Sbjct: 209 KQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMNCCNIGVEGVKHIINMKQLKHLIISGNN 268
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I + G + L LT L++ I G AY+
Sbjct: 269 IGNKGCELILDLEQLTFLNIENNNIDVEGIAYI 301
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 2/242 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT+LS NN + + K L L+ L++ H G L L +L +L+I
Sbjct: 64 MKQLTNLSISYNN-MNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDN 122
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C I K LS + +L +L I +++ G+ ++ GL KLT L++ + L
Sbjct: 123 CE-IGVEGAKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYL 181
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ L L+++ L G E S + L SL++ IG EG +++ + L L ++
Sbjct: 182 REMRQLNNLDVSTNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMN 241
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+G G++H+ + L+ + +S I + + L L LN++ I G+A +
Sbjct: 242 CCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENNNIDVEGIAYI 301
Query: 345 TS 346
S
Sbjct: 302 AS 303
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 95/195 (48%), Gaps = 2/195 (1%)
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L +S + +++ L L ++N++ I+ + L+ L L +L++D +I G
Sbjct: 70 LSISYNNMNVENTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEG 129
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L+ + LT+L++ RI G ++ L L+I + + G K+++++ L
Sbjct: 130 AKYLSEMKHLTNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNN 189
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L++S N L + +E IS + L SL+++ + I G +H+ + L L + C +
Sbjct: 190 LDVSTNA-LRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNMNCCNIGVE 248
Query: 461 DIKR-LQSRDLPNLV 474
+K + + L +L+
Sbjct: 249 GVKHIINMKQLKHLI 263
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDS 363
LS T D S + L ++ +L ++ R+ +D+ + + LT+L + +
Sbjct: 22 LSLTRNHDHSKMQGQFLQNIATLKVEKRR-SDSVVFDCKIFEWMKQLTNLSISYNNMNVE 80
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
Y+ L +L I G +T G K++ +L L L++ NC + + + +S + L
Sbjct: 81 NTKYIGQLDKLINLNINGNAITHEGAKYLSELEQLNTLHID-NCEIGVEGAKYLSEMKHL 139
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+LN+ ++RI G++H+ L L L + + K+ K L+ R L NL
Sbjct: 140 TNLNIGSNRIGVEGVKHIIGLSKLTFLDISNNKIGEEGAKYLREMRQLNNL 190
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 49/238 (20%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---------------------- 92
Q L++++++G+ +T G +L + L +L + C
Sbjct: 87 QLDKLINLNINGNAITHEGAKYLSELEQLNTLHIDNCEIGVEGAKYLSEMKHLTNLNIGS 146
Query: 93 -QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+I G++H+ GLS LT L NN I +G K + L LD+
Sbjct: 147 NRIGVEGVKHIIGLSKLTFLDI-SNNKIGEEGAKYLREMRQLNNLDVS------------ 193
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
N + ++ +S + L SL I+ + + G ++ + +LT LN+
Sbjct: 194 -------------TNALRQQGIEYISEMKQLTSLSIAVNLIGVEGAKHISEMTQLTKLNM 240
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
C + + + + L +L ++ + + GCE L L LN+++ I EG+
Sbjct: 241 NCCNIGVEGVKHIINMKQLKHLIISGNNIGNKGCELILDLEQLTFLNIENNNIDVEGI 298
>gi|428317664|ref|YP_007115546.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428241344|gb|AFZ07130.1| leucine-rich repeat-containing protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 782
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 127/365 (34%), Positives = 188/365 (51%), Gaps = 41/365 (11%)
Query: 103 RGLSNLTSLSFRRN-NAITAQG-----MKAFAGLINLVKLDLE--RCTRIHGGLVNLKGL 154
R ++N TSLS N A+ QG + + + L NL L+LE + T I L L
Sbjct: 63 RSITNFTSLSALTNLTALYLQGSQINDIASLSALTNLTYLNLESNQITDI----TPLSAL 118
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEG 213
L LN+ N ITD + PLSGLTNL L + +++TD +G++ L L L L G
Sbjct: 119 TNLTYLNLN-HNQITD--ITPLSGLTNLTILSLEYNQITDITGLSALTNLTDLCL----G 171
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
C + L L +L ++LN +++D S LTNL L +++ I D + L+
Sbjct: 172 CN-QITDITGLLGLTNLTRVSLNNNEITD--VTPLSALTNLTKLGIENQEITD--ISPLS 226
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L NL L +SD G + LS LTNL + +S GI+D + L+ L++L L++
Sbjct: 227 ALTNLTELSISD---GIIDISPLSALTNLTELFIS-EGITD--ISPLSALTNLTKLSIIY 280
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
T T ++ L++LT LT L +ITD A L NL L + +TD + +
Sbjct: 281 ND-TITEISPLSALTNLTSLYFLYTQITDITA--LSALTNLTYLYLSDNQITD--ITALS 335
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L++LT LNLS N +TD + +S LT L LN+SN++IT + L L NL L LE
Sbjct: 336 ALTNLTYLNLSNN-QITD--IAALSALTNLTYLNLSNNQIT--DITALSALTNLTELHLE 390
Query: 454 SCKVT 458
+ ++T
Sbjct: 391 TNQIT 395
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 160/325 (49%), Gaps = 44/325 (13%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++L + +TD + L +NL L+ N QI+D + L GL+NLT LS N
Sbjct: 97 TNLTYLNLESNQITD--ITPLSALTNLTYLNLNHN-QITD--ITPLSGLTNLTILSLEYN 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK 174
G+ A L +L L + T I G GL NL + SLN N ITD +
Sbjct: 152 QITDITGLSALTNLTDLC-LGCNQITDITGLLGLTNLTRV----SLN---NNEITD--VT 201
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY-- 232
PLS LTNL L I ++TD I+ L L LT L++ + + L +L+ L LF
Sbjct: 202 PLSALTNLTKLGIENQEITD--ISPLSALTNLTELSISDGIIDISPLSALTNLTELFISE 259
Query: 233 -----------LNLNRCQL--SDDGCE--KFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
NL + + +D E S LTNL SL I D + L+ L N
Sbjct: 260 GITDISPLSALTNLTKLSIIYNDTITEISPLSALTNLTSLYFLYTQITD--ITALSALTN 317
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L LSD Q+ + + LS LTNL +NLS I+D + L+ L++L LNL QIT
Sbjct: 318 LTYLYLSDNQI--TDITALSALTNLTYLNLSNNQITD--IAALSALTNLTYLNLSNNQIT 373
Query: 338 DTGLAALTSLTGLTHLDLFGARITD 362
D + AL++LT LT L L +ITD
Sbjct: 374 D--ITALSALTNLTELHLETNQITD 396
>gi|17546520|ref|NP_519922.1| GALA protein 3 [Ralstonia solanacearum GMI1000]
Length = 522
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 16/336 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQIS 188
L LDL RC G + G+ L L + N I + L+ L SL +S
Sbjct: 130 LKALDLSRCR----GSITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNVS 185
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 186 NGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGAREL 245
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ T L +L+ + GIG +G L L L + ++G +G+ L+ L ++N+
Sbjct: 246 AACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNVE 305
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA L
Sbjct: 306 STGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQAL 365
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLN 427
L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L+
Sbjct: 366 AANTKLTTLDLGYNDIGDAGVRALSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTLD 423
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+S + I G + L + TL + V++NDIK
Sbjct: 424 ISGNGIQDQGAKALAA-----NPTLTTLDVSSNDIK 454
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 128/469 (27%), Positives = 214/469 (45%), Gaps = 43/469 (9%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 50 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 107
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 108 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGSITAAGIAHLS 151
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 152 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 209
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL--NLEGCPVTAACL 221
N I + K L+ L+SL +S +++ D G L +LT L N G V A
Sbjct: 210 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARELAACTQLTTLDANRNGIGVDGAT- 267
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+L+A +L L + ++ D G + L +LN++S G+G +G+ L L L
Sbjct: 268 -ALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWL 326
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L +G++G L+ T+L +++L + I + LA + L +L+L I D G+
Sbjct: 327 RLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGV 386
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
AL++ L L + + D+ A L K L +L+I G G+ D G K + +LT L
Sbjct: 387 RALSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTL 446
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++S N ++ + ++ LVSL++ N+R+ +G R L + L SL
Sbjct: 447 DVSSN-DIKNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 494
>gi|290978509|ref|XP_002671978.1| predicted protein [Naegleria gruberi]
gi|284085551|gb|EFC39234.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 2/230 (0%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L NL +L I S++ + G+ + L+ LT LN+ + ++ + L +L L
Sbjct: 57 KSISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNI--GLVEPIINLKTLTAL 114
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++ + ++G + S+LT L SL +D I +EG L L NL L+L+ + +G G
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ + T L+ + LS IS+ + L+ L+ L L L I D GL L+SL L +L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYL 234
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ G +ITD G ++R +NL+ + I LT G I+++S T L+L
Sbjct: 235 NVSGNQITDEGVVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLDL 284
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 29/238 (12%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCL 281
S+S L +L L++ ++ ++G E +L NL LN+ S IG E ++NL L L
Sbjct: 58 SISDLKNLTTLDIGYSRIGNEGLESIGQLENLTRLNIRSNNIGLVEPIINLKTLT---AL 114
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++ + +G+ G++ +S LT L S+ + + I++ + L L +L L+L I D G
Sbjct: 115 DIGENSIGNEGVKSISKLTELTSLFIDYDDINEEGAKYLCELPNLTILDLTGSNIGDEGA 174
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ T L HL L A I++ G YL + L L + + D G+KH LSSL +L
Sbjct: 175 KFIGQSTKLKHLFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKH---LSSLKML 231
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N LNVS ++IT G+ ++ ++NL+ +++ + +TA
Sbjct: 232 NY----------------------LNVSGNQITDEGVVFIREMENLKRISITNNLLTA 267
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 53/279 (18%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ D NL +LD + +I + GLE + L NLT L+ R NN I LV+
Sbjct: 59 ISDLKNLTTLDIGYS-RIGNEGLESIGQLENLTRLNIRSNN-------------IGLVE- 103
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++NLK L L+ N I + +K +S LT L SL I + + G
Sbjct: 104 ----------PIINLKTLTALDI----GENSIGNEGVKSISKLTELTSLFIDYDDINEEG 149
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
YL L LT+L+L G + D+G + + T L+
Sbjct: 150 AKYLCELPNLTILDLTGSNI------------------------GDEGAKFIGQSTKLKH 185
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L L I + G+ L+ L L L LS +G GL+HLS L L +N+S I+D
Sbjct: 186 LFLSLADISNVGVNYLSSLNELVDLILSLNDIGDEGLKHLSSLKMLNYLNVSGNQITDEG 245
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ + + +LK +++ +T G + ++ T LDL
Sbjct: 246 VVFIREMENLKRISITNNLLTAVGENLIQEMSITTDLDL 284
>gi|290991518|ref|XP_002678382.1| predicted protein [Naegleria gruberi]
gi|284091994|gb|EFC45638.1| predicted protein [Naegleria gruberi]
Length = 344
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 27/338 (7%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN IT++G + F L L+KLD+ GG I D MK
Sbjct: 11 NNPITSKGAEYFTNLKQLIKLDI-------GGTE------------------IGDEGMKS 45
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ + L L++ +K+ D GI L L LT L + + +L L L YL+
Sbjct: 46 IGKMKQLTKLEMCGNKIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLD 105
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ + +L + G ++ S L L L + IGDEG + + L L +S+ +G G
Sbjct: 106 IRKNKLGNQGAKEISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAI 165
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+S L +L+++ + +T + ++ + + L L++ + ++ + + L LT L
Sbjct: 166 SVSQLRHLKTLCIQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLL 225
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ +I DSGA + L +L I + G K + + +LT LNLS N + +K L
Sbjct: 226 ISDNQIGDSGAKIISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGN-KIGNKGL 284
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
E ISG+ L L+V + I G ++L + NLR L +
Sbjct: 285 EAISGMLQLQKLSVIHCEIGDEGAKYLLNMPNLRKLYI 322
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 31/339 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGL-SNLTSLSFR 114
L+ +D+ G+++ D G+ + L L+ C +I D G++ L L S+LT L R
Sbjct: 26 KQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEM--CGNKIGDEGIKALSNLNSSLTHLCVR 83
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+NN I +G K L L LD+ + N + + K
Sbjct: 84 KNN-IGQEGAKTLKHLTRLNYLDIRK-------------------------NKLGNQGAK 117
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S L L L I + + D G + +Q LT L + P+ S+S L L L
Sbjct: 118 EISELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLC 177
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ + +G + + L L++ S +G + + + L L L +SD Q+G SG +
Sbjct: 178 IQWTNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAK 237
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+S L L ++ + + I + L+G+ +L LNL +I + GL A++ + L L
Sbjct: 238 IISELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKIGNKGLEAISGMLQLQKLS 297
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ I D GA YL N NLR L I G ++D +K ++
Sbjct: 298 VIHCEIGDEGAKYLLNMPNLRKLYI-GDDISDRIIKELR 335
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 24/279 (8%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+ + T LN+ P+T+ + + L L L++ ++ D+G + ++ L L +
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 263 GIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
IGDEG+ L+ L +L L + +G G + L LT L +++ + + ++++
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKNNIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEIS 120
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
L L L + I D G A+ + LT L + I D GA + ++L++L I
Sbjct: 121 ELPQLTRLFICKNNIGDEGAKAIGEIQTLTQLVMSENPIGDGGAISVSQLRHLKTLCIQW 180
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNC-----------------------NLTDKTLELIS 418
+ G+K I ++ LT L++ N + D ++IS
Sbjct: 181 TNVRTEGIKAICNMKQLTCLHIQSNKLGFDDIKPIGQLNQLTRLLISDNQIGDSGAKIIS 240
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L L +L + +S I G + L +KNL L L K+
Sbjct: 241 ELNQLTNLRIYDSNIGIEGAKSLSGMKNLTKLNLSGNKI 279
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++ LN+ IT G T+L L LD+ G I D G + K L LE+CG
Sbjct: 1 MTQFTELNVFNNPITSKGAEYFTNLKQLIKLDIGGTEIGDEGMKSIGKMKQLTKLEMCGN 60
Query: 383 GLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ D G+K + +L SSLT L + +N N+ + + + LT L L++ +++ + G + +
Sbjct: 61 KIGDEGIKALSNLNSSLTHLCVRKN-NIGQEGAKTLKHLTRLNYLDIRKNKLGNQGAKEI 119
Query: 442 KPLKNLRSLTLESCKVTAND 461
L L L + CK D
Sbjct: 120 SELPQLTRLFI--CKNNIGD 137
>gi|300691489|ref|YP_003752484.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078549|emb|CBJ51205.2| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum PSI07]
Length = 533
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 173/371 (46%), Gaps = 5/371 (1%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L LD + C I+ G+ HL L L L+ R + I +G + A L LD+
Sbjct: 139 ASLTELDLSRCRGPITAAGIAHLSHLP-LVRLNVR-DQRIGVEGARLLANHPTLTSLDVS 196
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L +L +L++ N I K L+ L SL IS + + D G
Sbjct: 197 NGRIGPEGARALADNTRLTTLSVS-HNRIGAEGAKALAASETLTSLDISENGIGDEGACA 255
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L KLT LN+ + +L+A +L L++ + D+G + L +LN+
Sbjct: 256 LATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNV 315
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ +G +G+ L L L + +G +G R L+ T+L ++++ GIS +
Sbjct: 316 ERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQA 375
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
LA ++L +LNL I D G A ++ T L L + ++D+GA L K + +L+
Sbjct: 376 LAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDA 435
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ DAG + + +LT L++ N + + ++ T L SL++ N+R+T AG+R
Sbjct: 436 GDNTIRDAGARALAANRTLTTLDVRSN-EIENAGARALAANTWLASLDLRNNRVTEAGVR 494
Query: 440 HLKPLKNLRSL 450
L + L SL
Sbjct: 495 ALLANRTLSSL 505
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 124/416 (29%), Positives = 196/416 (47%), Gaps = 23/416 (5%)
Query: 72 SGLIHLKDCSNLQSLD-FNFCIQISDGGLEHLRGL-SNLTSLSFRR-NNAITAQGMKAFA 128
+GL +K N +L+ +D LRGL ++LT L R ITA G+ +
Sbjct: 106 AGLAGVKRAGNYPALEKLTLIGPFTD---NDLRGLPASLTELDLSRCRGPITAAGIAHLS 162
Query: 129 GLINLVKLDLERCTRI--HGG--LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LV+L++ R RI G L N L L+ N + I + L+ T L +
Sbjct: 163 HLP-LVRLNV-RDQRIGVEGARLLANHPTLTSLDVSNGR----IGPEGARALADNTRLTT 216
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S +++ G L + LT L++ G AC +L+ L LN+NR ++
Sbjct: 217 LSVSHNRIGAEGAKALAASETLTSLDISENGIGDEGAC--ALATNTKLTTLNVNRNRIGV 274
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+G + + L SL++ IGDEG+ L L L + T+VG+ G+ L+ L
Sbjct: 275 EGAKALAAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTL 334
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S+ + I D R LA +SL +L++++ I+ G AL + T LT L+L I D
Sbjct: 335 TSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGD 394
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+GA L SL + GL+DAG + ++T L+ N + D ++
Sbjct: 395 AGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNT-IRDAGARALAANRT 453
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +L+V ++ I +AG R L L SL L + +VT ++ L +R L +L VSF
Sbjct: 454 LTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRALLANRTLSSLGVSF 509
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 159/344 (46%), Gaps = 15/344 (4%)
Query: 77 LKDCSNLQSLDFNFCIQISDG--GLEHLRGLSN---LTSLSFRRNNAITAQGMKAFAGLI 131
L + L SLD +S+G G E R L++ LT+LS N I A+G KA A
Sbjct: 184 LANHPTLTSLD------VSNGRIGPEGARALADNTRLTTLSVSHNR-IGAEGAKALAASE 236
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L LD+ G L KL +LN+ N I K L+ L SL I +
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTTLNVN-RNRIGVEGAKALAAGEALTSLDIGGND 295
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+ D G+ L +LT LN+E V A + +L+A +L L ++ + D G +
Sbjct: 296 IGDEGVRALAANARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATN 355
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
T+L +L+++S GI G L L L L +G +G + S T L S+++ G
Sbjct: 356 TSLTTLHIESNGISPAGAQALAANTTLTTLNLGYNGIGDAGAQAWSANTTLISLSVRRNG 415
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+SD LA ++ +L+ I D G AL + LT LD+ I ++GA L
Sbjct: 416 LSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTLDVRSNEIENAGARALAAN 475
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
L SL++ +T+AGV+ + L++ TL +L + N K E
Sbjct: 476 TWLASLDLRNNRVTEAGVRAL--LANRTLSSLGVSFNYCSKPTE 517
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 169/367 (46%), Gaps = 35/367 (9%)
Query: 114 RRNNAITAQGMKAFA-GLINLVKLDLER-CTRIHGGLVNLK---GLMKLESLNIKWCNCI 168
RR+ + Q ++A + L V+ D+ + R GL +K LE L +
Sbjct: 72 RRSKPLAVQRLRAVSKPLKAAVEADMRQLVIRDRAGLAGVKRAGNYPALEKLTL--IGPF 129
Query: 169 TDSDMKPLSGLTNLKSLQIS-C-SKVTDSGIAYLKGLQKLTL------LNLEGCPVTA-- 218
TD+D++ L +L L +S C +T +GIA+L L + L + +EG + A
Sbjct: 130 TDNDLRGLPA--SLTELDLSRCRGPITAAGIAHLSHLPLVRLNVRDQRIGVEGARLLANH 187
Query: 219 ---ACLD------------SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
LD +L+ L L+++ ++ +G + + L SL++ G
Sbjct: 188 PTLTSLDVSNGRIGPEGARALADNTRLTTLSVSHNRIGAEGAKALAASETLTSLDISENG 247
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
IGDEG L L L ++ ++G G + L+ L S+++ I D +R LA
Sbjct: 248 IGDEGACALATNTKLTTLNVNRNRIGVEGAKALAAGEALTSLDIGGNDIGDEGVRALAAN 307
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+ L +LN++ ++ G+ AL + LT L + I D+GA L +L +L I G
Sbjct: 308 ARLTTLNVERTRVGADGVGALAASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNG 367
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
++ AG + + ++LT LNL N + D + S T L+SL+V + ++ AG L
Sbjct: 368 ISPAGAQALAANTTLTTLNLGYN-GIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAA 426
Query: 444 LKNLRSL 450
K + +L
Sbjct: 427 SKTMTTL 433
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 27/287 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L + L +L+ N +I G + L LTSL N+
Sbjct: 237 TLTSLDISENGIGDEGACALATNTKLTTLNVNRN-RIGVEGAKALAAGEALTSLDIGGND 295
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G++A A L L++ER TR+ V L+
Sbjct: 296 -IGDEGVRALAANARLTTLNVER-TRVGADGVGA------------------------LA 329
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L SL+I + + D+G L LT L++E ++ A +L+A +L LNL
Sbjct: 330 ASKTLTSLRIDSNNIGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY 389
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D G + +S T L SL++ G+ D G L + L+ D + +G R L+
Sbjct: 390 NGIGDAGAQAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARALA 449
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
L ++++ I + R LA + L SL+L ++T+ G+ AL
Sbjct: 450 ANRTLTTLDVRSNEIENAGARALAANTWLASLDLRNNRVTEAGVRAL 496
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+ G +L S+D+ G+D+ D G+ L + L +L+ ++ G+ L LTSL
Sbjct: 281 AAGEALTSLDIGGNDIGDEGVRALAANARLTTLNVERT-RVGADGVGALAASKTLTSLRI 339
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I G +A A +L L +E G L L +LN+ + N I D+
Sbjct: 340 DSNN-IGDAGARALATNTSLTTLHIESNGISPAGAQALAANTTLTTLNLGY-NGIGDAGA 397
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ S T L SL + + ++D+G L + +T L+ + A +L+A +L L
Sbjct: 398 QAWSANTTLISLSVRRNGLSDAGATILAASKTMTTLDAGDNTIRDAGARALAANRTLTTL 457
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
++ ++ + G + T L SL+L + + + G+
Sbjct: 458 DVRSNEIENAGARALAANTWLASLDLRNNRVTEAGV 493
>gi|326427049|gb|EGD72619.1| hypothetical protein PTSG_04354 [Salpingoeca sp. ATCC 50818]
Length = 1165
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 172/357 (48%), Gaps = 54/357 (15%)
Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++ L + +TD+ ++ L + L L+I C +T GIA LKG L L+L G
Sbjct: 767 IQHLAFRSSVVVTDAFLRVLGTQFPTLYELEIYDCPMLTFRGIAALKGAPNLASLHLSGA 826
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL------TNLESLNLDSCGIGDEG 268
T +C+D+L +L L + +LN ++S ++F+R T+L+SL L SC D+G
Sbjct: 827 -FTDSCVDALMSLHPLEHFSLNGARVS---SQQFARFLSSPTATHLQSLALTSCPALDDG 882
Query: 269 -LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA------ 321
L ++ GL +L L LS T V + G L+ L +L S+NLS+T S+ + LA
Sbjct: 883 ILPSICGLTDLGHLSLSKTPVRAVG--QLASLPHLYSLNLSYTRASEREVGALAAATNMT 940
Query: 322 ------------------GLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGA-RIT 361
G SL L L +R D LA + +LT +T LDL G ++T
Sbjct: 941 TLGLFGLNLSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLT 1000
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISG 419
G + + L+SL + LTDA + HI L SL ++S+ ++TD G
Sbjct: 1001 PDGLKAIAAMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRT-DVTDACAPAFKG 1059
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKN---LRSLTLESCKVTA------NDIKRLQS 467
+ LN+S +RIT+ H L + L++L++E + N + RLQS
Sbjct: 1060 FAAVARLNLSRTRITNTFF-HAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQS 1115
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 178/409 (43%), Gaps = 35/409 (8%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP +++++ L S++AFR C +Q L V D ++ V+ +Q +L
Sbjct: 736 LPETLAREVMTAAAEKETLNSKSIKAFRSCGIQHLAFRSSVVVTDAFLRVLGTQFPTLYE 795
Query: 62 VDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA-I 119
+++ + T G+ LK NL SL + +D ++ L L L S N A +
Sbjct: 796 LEIYDCPMLTFRGIAALKGAPNLASLHLSGA--FTDSCVDALMSLHPLEHFSL--NGARV 851
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
++Q F L T H L+SL + C + D + + GL
Sbjct: 852 SSQQFARF----------LSSPTATH-----------LQSLALTSCPALDDGILPSICGL 890
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T+L L +S + V + L L L LNL + + +L+A ++ L L
Sbjct: 891 TDLGHLSLSKTPV--RAVGQLASLPHLYSLNLSYTRASEREVGALAAATNMTTLGLFGLN 948
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSD-TQVGSSGLRHLS 297
LS D ++ +L L L S D+ L ++ L ++ L+LS Q+ GL+ ++
Sbjct: 949 LSSDAYAPWAGHGSLAELTLSSRDSFDDACLAHVCTLTHVTTLDLSGYYQLTPDGLKAIA 1008
Query: 298 GLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ L+S++LS T ++D +L + GL SL + ++ +TD A + L+L
Sbjct: 1009 AMQQLQSLSLSNTALTDAALLHIGGVGLPSLDTFDISRTDVTDACAPAFKGFAAVARLNL 1068
Query: 356 FGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
RIT++ A L + L++L I + G+ + LS L +N
Sbjct: 1069 SRTRITNTFFHAHALNDCAALQTLSIERTHTSTKGLAELNGLSRLQSVN 1117
>gi|115689700|ref|XP_783241.2| PREDICTED: F-box/LRR-repeat protein 13-like [Strongylocentrotus
purpuratus]
Length = 871
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 225/480 (46%), Gaps = 60/480 (12%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT+ S +A C LQDL + + PG+ND M +A S LL +++S +++TD+ L L
Sbjct: 312 LTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNITDATLRLLA 371
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ CSNLQ L +C + SD GL++L RG L L IT G K + G L
Sbjct: 372 RCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLDLSGCPQITVNGYKNISGGCPKL 431
Query: 134 VKLDLERCTRIHGGLV--------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
L + C + ++ N++ + L + N ITD +K L+ L+ +
Sbjct: 432 QHLIINDCYTLRDDMIVAVAANCHNIRCISFLYTPN------ITDVALKALAVHRKLQQI 485
Query: 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLS 241
+I + K+TD+ L + L + + CP +T A L SL+ ++ LN+ C ++S
Sbjct: 486 RIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVLNVADCIRIS 545
Query: 242 DDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
D+G L +NL +C + D ++ +T KC L GS
Sbjct: 546 DNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQ----KCYSLV---YGS------- 591
Query: 298 GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
F+ I+D L + +L SL++ ITDTGL AL + L + L
Sbjct: 592 ---------FCFSEHITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLS 642
Query: 357 GA-RITDSG-AAYLRNFKNLRSLEICGG-GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDK 412
+ITD G + + ++L L+I LTD +K++ L+ LN++ L+D
Sbjct: 643 ECHQITDLGIQKFAQQCRDLDRLDISHCLQLTDQAIKNLAFCCRKLSFLNIAGCSQLSDM 702
Query: 413 TLELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 468
++ ISG+ L SLN S +++ +R L K LK LR+L + C +T I +L ++
Sbjct: 703 SIRYISGVCHYLQSLNFSGCIKVSDDSMRFLRKGLKRLRNLNMLYCHLITKPTIVKLSAK 762
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 160/369 (43%), Gaps = 62/369 (16%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
LNIK C+ +T K + NL+ L +S C + D + Y+ +G L LN+ +T
Sbjct: 304 LNIKGCSMLTKPSFKAVGQCRNLQDLNMSECPGLNDDTMKYVAEGCSVLLYLNISFTNIT 363
Query: 218 AACLDSLSALGS-LFYLNLNRCQ-LSDDGCEKF------SRLTNLESLNLDSCG-IGDEG 268
A L L+ S L YL+L C+ SD G + RL +L+ L C I G
Sbjct: 364 DATLRLLARCCSNLQYLSLAYCKRFSDKGLQYLGTGRGGRRLVHLD---LSGCPQITVNG 420
Query: 269 LVNLTGLCNL-------KCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 320
N++G C C L D + + + N+ I+ +T I+D +L+ L
Sbjct: 421 YKNISGGCPKLQHLIINDCYTLRDDMIVAVA----ANCHNIRCISFLYTPNITDVALKAL 476
Query: 321 AGLSSLKSLNLDAR-QITDTGLAALTSL-TGLTHLDLFG-ARITDSGAAYLRNFKNLRSL 377
A L+ + ++ +ITD L L H+ + RITD+ L +N+ L
Sbjct: 477 AVHRKLQQIRIEGNCKITDASFKLLGRYCVDLRHIYVSDCPRITDAALKSLATCRNINVL 536
Query: 378 EICGG-GLTDAGVKHIKD-----------------LSSLTLLNLSQNC------------ 407
+ ++D GV+++ + ++ ++++ ++Q C
Sbjct: 537 NVADCIRISDNGVRNLVEGPSGPKLREMNLTNCVRVTDVSIMKITQKCYSLVYGSFCFSE 596
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL- 465
++TD E++ + L SL++S IT GL L +LR + L C ++T I++
Sbjct: 597 HITDAGAEMLGNMPALSSLDISGCNITDTGLGALGNCYHLRDVVLSECHQITDLGIQKFA 656
Query: 466 -QSRDLPNL 473
Q RDL L
Sbjct: 657 QQCRDLDRL 665
>gi|159486717|ref|XP_001701384.1| hypothetical protein CHLREDRAFT_153692 [Chlamydomonas reinhardtii]
gi|158271686|gb|EDO97500.1| predicted protein [Chlamydomonas reinhardtii]
Length = 293
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 11/162 (6%)
Query: 324 SSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKN 373
S+L LNL ++ TD L ++ L+ LT LD+FG R+TD+GAA L +
Sbjct: 116 STLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRG 175
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSR 432
LRSLE CGGG+TDAG + L++LT LNLSQN L D + L + L L L+++++
Sbjct: 176 LRSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTN 235
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+TSA LR L L LRSL L +V+ + RL++R P+L+
Sbjct: 236 VTSACLRELAQLPWLRSLALAGSRVSEAGVARLKARAHPDLI 277
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 229 SLFYLNLN-------RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG---LCNL 278
+L +LNL R L+D SRL+ L +L++ C + D G L G L L
Sbjct: 117 TLTHLNLTYTKVCVLRGTLTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGL 176
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAG-LSSLKSLNLDARQI 336
+ LE + +G L+ LT L S+NLS + D +R LA L+ L+ L+L+ +
Sbjct: 177 RSLECCGGGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLNHTNV 236
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
T L L L L L L G+R++++G A L+
Sbjct: 237 TSACLRELAQLPWLRSLALAGSRVSEAGVARLK 269
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 25/156 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT-LLNLEGCPVTAACLDSLSA 226
+TD+ ++ +S L+ L +L + ++TD+G A L G L L +LE C
Sbjct: 135 LTDAALRHVSRLSCLTALDVFGCRLTDAGAAVLGGAPALRGLRSLECCG----------- 183
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTG-LCNLKCLELS 284
++D G +RLT L SLNL + +GD G+ +L L L+ L L+
Sbjct: 184 -----------GGITDAGALCLARLTALTSLNLSQNPRLGDAGVRSLAAHLAELQVLSLN 232
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
T V S+ LR L+ L L S+ L+ + +S+ + +L
Sbjct: 233 HTNVTSACLRELAQLPWLRSLALAGSRVSEAGVARL 268
>gi|290976088|ref|XP_002670773.1| predicted protein [Naegleria gruberi]
gi|284084335|gb|EFC38029.1| predicted protein [Naegleria gruberi]
Length = 681
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 1/250 (0%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L L++ +C I+D ++ +S + LK L +S ++ + + +K +++LT+L++ +
Sbjct: 415 LRRLHVVFCK-ISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKL 473
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
++ +S + +L L +N L G E ++L L L + S IGDEG+ +++ +
Sbjct: 474 KCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMK 533
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL L++S +G G +S L L IN+ F I + L L +L ++ +I
Sbjct: 534 NLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTLLINNCEI 593
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TG ++ + +T LD+ I D GA Y+ + L L + +TD G+K I +
Sbjct: 594 GPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMK 653
Query: 397 SLTLLNLSQN 406
+L LL++S N
Sbjct: 654 NLQLLDVSGN 663
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 25/285 (8%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ +L+ L + K++D I+ + +++L LN+ G + + + + L L
Sbjct: 407 KSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQLTIL 466
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+++ +L E S + NL SL ++ +G +G + L L+ L + +G G+
Sbjct: 467 DMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGM 526
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+S + NL +++S GI + ++ L L +N+ I G ++ L LT L
Sbjct: 527 YSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNLIGQQGAESIGELEQLTTL 586
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+ I +GA ++ + + L+I + D G +I +L L++L
Sbjct: 587 LINNCEIGPTGAKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILY----------- 635
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
V+N+ IT GL+ + +KNL+ L + K++
Sbjct: 636 --------------VNNNEITDEGLKAITQMKNLQLLDVSGNKIS 666
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 6/221 (2%)
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
D + +R +L L++ C I D + ++ + LK L +S + + + + L
Sbjct: 404 DRSKSIARCEHLRRLHVVFCKISDREISVISQMKQLKELNVSGNRFSFESVCKIKDMKQL 463
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+++S+T + + ++G+ +L SL ++ + G + L L L + I D
Sbjct: 464 TILDMSYTKLKCLDVEVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGD 523
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
G + + KNL L++ G+ + G I L LT +N+ N + + E I L
Sbjct: 524 EGMYSISHMKNLTKLDVSSNGIGEEGANSISQLKGLTFINVGFNL-IGQQGAESIGELEQ 582
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
L +L ++N I G + + ++ + L ++ NDI+
Sbjct: 583 LTTLLINNCEIGPTGAKFISKMQRVTEL-----DISLNDIQ 618
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 113/251 (45%), Gaps = 34/251 (13%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF----CIQISDGGL 99
++D+ + VI SQ L +++SG+ + + +KD L LD ++ C+ +
Sbjct: 425 ISDREISVI-SQMKQLKELNVSGNRFSFESVCKIKDMKQLTILDMSYTKLKCLDV----- 478
Query: 100 EHLRGLSNLTSLSFRRN-----------------------NAITAQGMKAFAGLINLVKL 136
E + G+ NLTSL N N I +GM + + + NL KL
Sbjct: 479 EVVSGMRNLTSLRINDNDLGIQGAELIAQLDQLRELFIGSNNIGDEGMYSISHMKNLTKL 538
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D+ G ++ L L +N+ + N I + + L L +L I+ ++ +G
Sbjct: 539 DVSSNGIGEEGANSISQLKGLTFINVGF-NLIGQQGAESIGELEQLTTLLINNCEIGPTG 597
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
++ +Q++T L++ + +S L L L +N +++D+G + +++ NL+
Sbjct: 598 AKFISKMQRVTELDISLNDIQDEGAHYISELEKLSILYVNNNEITDEGLKAITQMKNLQL 657
Query: 257 LNLDSCGIGDE 267
L++ I DE
Sbjct: 658 LDVSGNKISDE 668
>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1699
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 217/402 (53%), Gaps = 39/402 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L++LD + C I+D + L LS+L +L
Sbjct: 861 SELSSLHTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLD 916
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDS 171
IT + + L +L LDL CT G+ ++ L KL SL + +C +
Sbjct: 917 LSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITDVSPLSKLSSLRTLDLSHCTGIT 970
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D+ PLS L++L++L +S C+ +TD ++ L L L L+L C + LS L SL
Sbjct: 971 DVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TGITDVSPLSELSSL 1027
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVG 289
L+L+ C D S L++L +L+L C GI D + L+ L +L+ L+LS G
Sbjct: 1028 RTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHC-TG 1083
Query: 290 SSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSL 347
+ + LS L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L
Sbjct: 1084 ITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSEL 1139
Query: 348 TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQ 405
+ L LDL ITD + L +LR+L++ G+TD V + LSSL L LS
Sbjct: 1140 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLCTLELSH 1195
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
+TD + +S L+ L +L++S+ R G+ + PL L
Sbjct: 1196 CTGITD--VSPLSELSSLRTLDLSHCR----GITDVSPLSEL 1231
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 148/470 (31%), Positives = 230/470 (48%), Gaps = 82/470 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++LD +
Sbjct: 934 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSH 988
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 989 CTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1043
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLL 209
L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L L L
Sbjct: 1044 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTL 1099
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEG 268
+L C + LS L SL L+L+ C D S L++L +L+L C GI D
Sbjct: 1100 DLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTGITD-- 1155
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLK 327
+ L+ L +L+ L+LS G + + LS L++L ++ LS TGI+D S L+ LSSL+
Sbjct: 1156 VSPLSELSSLRTLDLSHC-TGITDVSPLSKLSSLCTLELSHCTGITDVS--PLSELSSLR 1212
Query: 328 SLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGG- 382
+L+L R ITD ++ L+ L+ LDL ITD + L +LR+L++ C G
Sbjct: 1213 TLDLSHCRGITD--VSPLSELSNFVQLDLSHCTGITD--VSPLSVLSSLRTLDLSYCTGI 1268
Query: 383 ---------------------GLTD---------------------AGVKHIKDLSSLTL 400
G+TD A V + +LSSL +
Sbjct: 1269 TNVSPLSNLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCRGIANVSPLSNLSSLRM 1328
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LNLS +TD + +S L+ L +L++S+ G+ + PL L SL
Sbjct: 1329 LNLSHCTGITD--VSPLSVLSSLRTLDLSH----CTGITDVSPLSELSSL 1372
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 192/377 (50%), Gaps = 40/377 (10%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
LQ L + C I+D + L LS+ L IT + + L +L LDL CT
Sbjct: 544 LQKLYLSHCTGITD--VPPLSALSSFEKLDLSHCTGIT--DVSPLSKLSSLHTLDLSHCT 599
Query: 143 RIHGGLVNLKGLMKLESL---NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
G+ N+ L+K SL +I C IT+ + PLS L++L++L +S C+ +TD ++
Sbjct: 600 ----GITNVSPLLKFSSLRMLDISHCTGITN--VSPLSELSSLRTLDLSHCTGITD--VS 651
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
L L L+L C + LS SL L+++ C S+L++L +L+
Sbjct: 652 PLSKFSSLHTLDLSHC-TGITNVSPLSKFSSLRMLDISHCT-GITNVSPLSKLSSLHTLD 709
Query: 259 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 316
L C GI D + L+ L +L+ L+ S G + + LS L++L ++++S TGI+D S
Sbjct: 710 LSHCTGITD--VSPLSKLSSLRTLDFSHC-TGITNVSPLSELSSLRTLDISHCTGITDVS 766
Query: 317 LRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNL 374
L+ LSSL++L+L TD T ++ L+ ++ L LDL +TD + L L
Sbjct: 767 --PLSELSSLRTLDL--SHCTDITNVSPLSKISTLQKLDLSHCTGVTD--VSPLSKMIGL 820
Query: 375 RSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L + G+TD V + +LSSL +L+LS +TD + +S L+ L +L++S+
Sbjct: 821 EKLYLSHCTGITD--VPPLSELSSLRMLDLSHCTGITD--VSPLSELSSLHTLDLSH--- 873
Query: 434 TSAGLRHLKPLKNLRSL 450
G+ + PL L SL
Sbjct: 874 -CTGITDVSPLSELSSL 889
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 202/401 (50%), Gaps = 60/401 (14%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL ++DLS + +TD + L + S+L++LD + C I+D
Sbjct: 1347 SSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD------------------- 1385
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ + L +L LDL CT I + L L L +L + C IT D+ P
Sbjct: 1386 --------VSPLSKLSSLRTLDLSHCTGI-TDVSPLSVLSSLRTLGLSHCTGIT--DVSP 1434
Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS L++L++L +S C+ +TD ++ L L L L+L C + LS SL L
Sbjct: 1435 LSELSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSVFSSLRTLG 1491
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
L+ C D S L+NL +L+L C GI D + L+ L +L+ L+LS G + +
Sbjct: 1492 LSHCTGITD-VSPLSELSNLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDV 1547
Query: 294 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLT 351
LS L++L +++LS TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L
Sbjct: 1548 SPLSELSSLRTLDLSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLR 1603
Query: 352 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LDL ITD + L +LR+L++ G+TD V + LSSL L+LS +
Sbjct: 1604 TLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGI 1659
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TD + +S L+ L +L++ + G+ + PL L SL
Sbjct: 1660 TD--VSPLSELSSLRTLDL----LHCTGITDVSPLSELSSL 1694
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 182/358 (50%), Gaps = 48/358 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L++LD +
Sbjct: 1348 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSH 1402
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT I +
Sbjct: 1403 CTGITD--VSPLSVLSSLRTLGLSHCTGIT--DVSPLSELSSLRTLDLSHCTGI-TDVSP 1457
Query: 151 LKGLMKLESLNIKWCNCITD---------------------SDMKPLSGLTNLKSLQIS- 188
L L L +L++ C ITD +D+ PLS L+NL++L +S
Sbjct: 1458 LSELSSLRTLDLSHCTGITDVSPLSVFSSLRTLGLSHCTGITDVSPLSELSNLRTLDLSH 1517
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
C+ +TD ++ L L L L+L C + LS L SL L+L+ C D
Sbjct: 1518 CTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPL 1573
Query: 249 SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
S+L++L +L+L C GI D + L+ L +L+ L+LS G + + LS L++L +++L
Sbjct: 1574 SKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDL 1630
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
S TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD
Sbjct: 1631 SHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLLHCTGITD 1684
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 195/389 (50%), Gaps = 34/389 (8%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D L L L++LD + C I+D L L LS L +L IT +
Sbjct: 345 DINDVTLRDLDGNECLRTLDLSHCTGITDVSL--LSKLSGLHTLGLSHCTGIT--DVSPL 400
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ L L L L CT I + L L L +L + C IT D+ PLS ++L++L I
Sbjct: 401 SNLSGLRMLGLSHCTGI-TDVSPLSELSSLRTLGLSHCTGIT--DVSPLSVFSSLRTLGI 457
Query: 188 S-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S C+ +TD S ++ + GLQKL L + G +T + LSAL S L+L+ C D
Sbjct: 458 SHCTGITDVSPLSKMNGLQKLYLSHCTG--ITD--VPPLSALSSFEKLDLSHCTGITD-V 512
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
S L++L +L++ C GI D + L+ + L+ L LS G + + LS L++ E
Sbjct: 513 SPLSVLSSLRTLDISHCTGITD--VSPLSKMNGLQKLYLSHC-TGITDVPPLSALSSFEK 569
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITD 362
++LS TGI+D S L+ LSSL +L+L + T ++ L + L LD+ IT+
Sbjct: 570 LDLSHCTGITDVS--PLSKLSSLHTLDL-SHCTGITNVSPLLKFSSLRMLDISHCTGITN 626
Query: 363 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+ L +LR+L++ G+TD V + SSL L+LS +T+ + +S +
Sbjct: 627 --VSPLSELSSLRTLDLSHCTGITD--VSPLSKFSSLHTLDLSHCTGITN--VSPLSKFS 680
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L L++S+ G+ ++ PL L SL
Sbjct: 681 SLRMLDISH----CTGITNVSPLSKLSSL 705
>gi|327272147|ref|XP_003220847.1| PREDICTED: f-box/LRR-repeat protein 14-like [Anolis carolinensis]
Length = 400
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 110/333 (33%), Positives = 174/333 (52%), Gaps = 37/333 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ ++ESLN+ C +TD+ + ++ +++L++L +S C ++TDS + YLKGL
Sbjct: 86 IQGMAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLD 260
+ L L GC L L L LNL C+ LSD G + +T +
Sbjct: 146 EAL---ELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---- 198
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLR 318
EG + L L C +LSD L+HLS GL+ L +NLSF G ISD L
Sbjct: 199 ------EGCLGLEQLTLQDCQKLSDLS-----LKHLSRGLSRLRQLNLSFCGGISDAGLL 247
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYL-RNFKNL 374
L+ +S L+ LNL + I+DTG+ L T L+ LD+ F ++ D AY+ + L
Sbjct: 248 HLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGL 307
Query: 375 RSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-S 431
RSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +
Sbjct: 308 RSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCT 367
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
RIT GL + L L+ L L ++T ++ R
Sbjct: 368 RITKRGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 165/342 (48%), Gaps = 70/342 (20%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S++LSG ++TD+GL H + + S+L++L+ + C QI+D L +
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRI--------------- 138
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
AQ +K L L+L C+ I G L+ GL +L+SLN++ C ++D +
Sbjct: 139 ---AQYLKG------LEALELGGCSNITNTGLLLVAWGLPRLKSLNLRSCRHLSDVGIGH 189
Query: 176 LSGLTN--------LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLS 225
L+G+T L+ L + C K++D + +L +GL +L LNL C
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCG---------- 239
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLEL 283
+SD G S ++ L LNL SC I D G+++L TG L L++
Sbjct: 240 -------------GISDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHLATGSLRLSGLDV 286
Query: 284 SDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDT 339
S +VG L +++ GL L S++L ISD + R + + L++LN+ +ITD
Sbjct: 287 SFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDK 346
Query: 340 GLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
GL + L+ LT +DL+G RIT G + L+ L +
Sbjct: 347 GLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNL 388
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ +ESLNL C G+G + ++ L L C +++D+ +G ++L GL
Sbjct: 89 MAEIESLNLSGCYNLTDNGLGHAFVAEISSLRALNLSLCKQITDSSLGRIA-QYLKGLEA 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLVAWGLPRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L +++D +L R LR L + CGG ++DAG+ H+ +S L +LNL
Sbjct: 204 LEQLTLQDCQKLSDLSLKHLSRGLSRLRQLNLSFCGG-ISDAGLLHLSHMSCLRVLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L +G L L+VS ++ L ++ + L LRSL+L SC ++ I
Sbjct: 263 CDNISDTGIMHLATGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 29/179 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL S L+ L+ C ISD G+ HL
Sbjct: 241 ISDAGLLHLSHMSCLRVLNLRSCDNISDTGIMHL------------------------AT 276
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L SL++ C+ + + + + L++L
Sbjct: 277 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLN 336
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSD 242
I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q+++
Sbjct: 337 IGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTE 395
>gi|343416336|emb|CCD20397.1| leucine-rich repeat protein (LRRP), protein [Trypanosoma vivax
Y486]
Length = 1138
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 178/389 (45%), Gaps = 17/389 (4%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C LQ+L + C I+D + L L +L SL R I +G F GL L L L
Sbjct: 420 CQQLQALVLHRCSNITD--ISPLSDLQSLVSLDIRECMNIV-EGWNCFMGLRMLKMLHLL 476
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIA 198
+ L +L +L+ L + CN ITD+ + L L+ L + CS ++ G A
Sbjct: 477 EARISNDSLRSLAACTQLQVLVLHRCNNITDTSL--LGSFQYLQVLDVRECSGIS-QGCA 533
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
YL L L + L G + + + L+ + L L C DD L LE L+
Sbjct: 534 YLNNLPYLRAMQLRGLVMDGSFVHRLTNQRHIRVLMLQPCVFIDD-ISPLQHLRELEVLS 592
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSL 317
L +C + G L GL LK L + + G+S LR L T+L S+ L S GISD S
Sbjct: 593 LCNCERIERGWDALAGLEKLKDLYILKGRFGNSFLRALQRNTHLRSLALYSCPGISDIS- 651
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L + L+ L++D G L L GL L L ++ S A+ LR+ ++LR L
Sbjct: 652 -SLGDVRGLEMLDIDNCASIRDGWYGLAKLKGLKELYLRQVKLPRSFASVLRSCESLRVL 710
Query: 378 EI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
EI C + + + I L L + NCN + L + L LV+L++S + ++
Sbjct: 711 EIFACKPVFSVSPLGTINGLEVLVI----DNCNASATELNGLLQLKCLVALHLSKAVLSR 766
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKR 464
LR L+ +L+S+ + CKV + R
Sbjct: 767 RVLRGLRSCVHLQSVCFDRCKVEKGAVFR 795
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 23/333 (6%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L L +++CN ITD + PL + L+ L I G + L L+ L +L
Sbjct: 351 RLRVLVLEYCNNITD--ISPLGYIRGLEVLGICECMSVKGGWSCLARLRMLKQFHLRDSR 408
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
L S++A L L L+RC D S L +L SL++ C EG GL
Sbjct: 409 TGNIALKSITACQQLQALVLHRCSNITD-ISPLSDLQSLVSLDIRECMNIVEGWNCFMGL 467
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN-LDA 333
LK L L + ++ + LR L+ T L+ + L I+D SL L S + L LD
Sbjct: 468 RMLKMLHLLEARISNDSLRSLAACTQLQVLVLHRCNNITDTSL-----LGSFQYLQVLDV 522
Query: 334 RQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGV 389
R+ + G A L +L L + L G + S L N +++R L + D + +
Sbjct: 523 RECSGISQGCAYLNNLPYLRAMQLRGLVMDGSFVHRLTNQRHIRVLMLQPCVFIDDISPL 582
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+H+++L L+L N C ++ + ++GL L L + R ++ LR L+ +LRS
Sbjct: 583 QHLRELEVLSLCN----CERIERGWDALAGLEKLKDLYILKGRFGNSFLRALQRNTHLRS 638
Query: 450 LTLESCKVTAN-----DIKRLQSRDLPNLVSFR 477
L L SC ++ D++ L+ D+ N S R
Sbjct: 639 LALYSCPGISDISSLGDVRGLEMLDIDNCASIR 671
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 187/444 (42%), Gaps = 74/444 (16%)
Query: 69 VTDSGLIH-LKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
V D +H L + +++ L C+ I D L+HLR L L+ + R +G A
Sbjct: 550 VMDGSFVHRLTNQRHIRVLMLQPCVFIDDISPLQHLRELEVLSLCNCER----IERGWDA 605
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
AGL L L + + + L L+ L SL + C I SD+ L + L+ L
Sbjct: 606 LAGLEKLKDLYILKGRFGNSFLRALQRNTHLRSLALYSCPGI--SDISSLGDVRGLEMLD 663
Query: 187 I-SCSKVTDS--GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
I +C+ + D G+A LKGL++L L ++ P + A + L + SL L + C+
Sbjct: 664 IDNCASIRDGWYGLAKLKGLKELYLRQVK-LPRSFASV--LRSCESLRVLEIFACK-PVF 719
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---ELSDTQVGSSGLRHLSGLT 300
+ LE L +D+C + L GL LKCL LS + LR L
Sbjct: 720 SVSPLGTINGLEVLVIDNC---NASATELNGLLQLKCLVALHLSKAVLSRRVLRGLRSCV 776
Query: 301 NLESINLSFTGISDGSL-RKLAGLS-------SLKSLN---------------------- 330
+L+S+ + G++ R GLS S K +N
Sbjct: 777 HLQSVCFDRCKVEKGAVFRSHHGLSVVDFTSPSKKKVNAHYLFSEEKPSEFRLQMMKLSR 836
Query: 331 --LDARQI------------TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L+A ++ T T ++ L + L LDL G G L L++
Sbjct: 837 DFLNALKLNTHLRTLVLYRCTFTNVSPLGDIKTLEVLDLDGCSRIKKGLDKLHTLVGLKT 896
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL---TGLVSLNVSNSRI 433
L + + ++ +K + L L L+L++ C +TD +SGL L +L++S
Sbjct: 897 LRLTSRSVRNSFLKGLAKLKHLRSLSLTR-CGITD-----VSGLGCIHWLEALDLSYCTK 950
Query: 434 TSAGLRHLKPLKNLRSLTLESCKV 457
+ G R + +K+L+ LTL C++
Sbjct: 951 INKGSRCIGEIKSLKELTLRGCRI 974
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 132/313 (42%), Gaps = 13/313 (4%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ C +L+ L+ C + + L ++ L L NA +A + L LV L
Sbjct: 701 LRSCESLRVLEIFACKPVFS--VSPLGTINGLEVLVIDNCNA-SATELNGLLQLKCLVAL 757
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L + L L+ + L+S+ C + + GL+ + S KV
Sbjct: 758 HLSKAVLSRRVLRGLRSCVHLQSVCFDRCKVEKGAVFRSHHGLSVVDFTSPSKKKVNAH- 816
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
YL +K + L+ ++ L++L L L L RC ++ + LE
Sbjct: 817 --YLFSEEKPSEFRLQMMKLSRDFLNALKLNTHLRTLVLYRCTFTN--VSPLGDIKTLEV 872
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L+LD C +GL L L LK L L+ V +S L+ L+ L +L S++L+ GI+D S
Sbjct: 873 LDLDGCSRIKKGLDKLHTLVGLKTLRLTSRSVRNSFLKGLAKLKHLRSLSLTRCGITDVS 932
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR- 375
L + L++L+L + G + + L L L G RI L LR
Sbjct: 933 --GLGCIHWLEALDLSYCTKINKGSRCIGEIKSLKELTLRGCRIYYPLFYALDGSDTLRK 990
Query: 376 -SLEICGGGLTDA 387
SL+ C GLTD
Sbjct: 991 LSLKYC-EGLTDV 1002
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 35/286 (12%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL---EHLRGLSNLTSL 111
Q L+++ LS + ++ L L+ C +LQS+ F+ C ++ G + H + + TS
Sbjct: 750 QLKCLVALHLSKAVLSRRVLRGLRSCVHLQSVCFDRC-KVEKGAVFRSHHGLSVVDFTSP 808
Query: 112 SFRRNNA-----------ITAQGMKAFAGLINLVKLD-------LERCTRIHGGLVNLKG 153
S ++ NA Q MK +N +KL+ L RCT + L
Sbjct: 809 SKKKVNAHYLFSEEKPSEFRLQMMKLSRDFLNALKLNTHLRTLVLYRCT--FTNVSPLGD 866
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ LE L++ C+ I + L L LK+L+++ V +S +LKGL KL +L
Sbjct: 867 IKTLEVLDLDGCSRIKKG-LDKLHTLVGLKTLRLTSRSVRNS---FLKGLAKLK--HLRS 920
Query: 214 CPVTAACLDSLSALGSLFY---LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+T + +S LG + + L+L+ C + G + +L+ L L C I
Sbjct: 921 LSLTRCGITDVSGLGCIHWLEALDLSYCTKINKGSRCIGEIKSLKELTLRGCRIYYPLFY 980
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDG 315
L G L+ L L + G + + L + LE +++ + GI G
Sbjct: 981 ALDGSDTLRKLSLKYCE-GLTDVYPLGAIHMLEDLDIRYCNGIEKG 1025
>gi|290976637|ref|XP_002671046.1| predicted protein [Naegleria gruberi]
gi|284084611|gb|EFC38302.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 149/315 (47%), Gaps = 26/315 (8%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I+++ ++ LINL +L + + + L L KL LNI C IT+ ++ +
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCK-ITNLGIESM 70
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGCP-------------- 215
G+ L SL+IS + + DSG+ L L +LT L++ EGC
Sbjct: 71 IGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQMKNLTDLSVG 130
Query: 216 ---VTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ + + L L L+ + Q+ S DG + + L L SLN+ IGD G
Sbjct: 131 LNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGAKV 190
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + LK L + T +G G + +S +TNL +++S + D + ++GL+ L L +
Sbjct: 191 ISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKLWI 250
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I + G +++ L LT LD+ I GA L K+L L+I + D+GVK+
Sbjct: 251 SEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGVKY 310
Query: 392 IKDLSSLTLLNLSQN 406
+ + L LN+ N
Sbjct: 311 LSKMKKLKHLNVYDN 325
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 26/301 (8%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I+ + + L NL L I + + + YL L+KLT+LN+ C +T
Sbjct: 12 NVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKCKIT-------- 63
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
NL G E + L SL + GI D G+ +L L L L++
Sbjct: 64 --------NL--------GIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDH 107
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAAL 344
++ + G + +S + NL +++ GI + ++ + L L +L+ A QI G+ ++
Sbjct: 108 NEIRTEGCKCISQMKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSI 167
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
TSL L L++ I D+GA + K L++L + + G K I ++++LT L++S
Sbjct: 168 TSLKQLISLNIGDNWIGDAGAKVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDIS 227
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
N NL D+ +LISGL L+ L +S I + G + L+ L L + + K
Sbjct: 228 AN-NLGDEGAKLISGLNQLIKLWISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKS 286
Query: 465 L 465
L
Sbjct: 287 L 287
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 151/327 (46%), Gaps = 29/327 (8%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+D+ + +L L L+ + C +I++ G+E + G+ LTSL N I G+K+
Sbjct: 36 NDIGYKAVEYLSKLEKLTILNISKC-KITNLGIESMIGMKQLTSLEISEN-GIDDSGVKS 93
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L L KLD++ + + C CI S + NL L
Sbjct: 94 LIELSQLTKLDIDH-----------------NEIRTEGCKCI--------SQMKNLTDLS 128
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQLSDDGC 245
+ + + + GI ++ L++LT L+ + + + S+++L L LN+ + D G
Sbjct: 129 VGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGDNWIGDAGA 188
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ S + L++L + S IG +G +++ + NL L++S +G G + +SGL L +
Sbjct: 189 KVISEMKQLKTLYMHSTLIGIDGTKSISEMTNLTFLDISANNLGDEGAKLISGLNQLIKL 248
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+S I + ++ L L L++ I G +L+ L LT LD+ I DSG
Sbjct: 249 WISEISIGNEGAESISKLEKLTELDVHRNSIETEGAKSLSKLKHLTRLDISENFIEDSGV 308
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHI 392
YL K L+ L + G+ D G K++
Sbjct: 309 KYLSKMKKLKHLNVYDNGI-DNGNKYL 334
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 102/205 (49%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L+ L+L S I E ++ L NL L + +G + +LS L L +N+S
Sbjct: 1 MDQLKKLDLISNVISSEATQSIGNLINLTELSIGYNDIGYKAVEYLSKLEKLTILNISKC 60
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I++ + + G+ L SL + I D+G+ +L L+ LT LD+ I G +
Sbjct: 61 KITNLGIESMIGMKQLTSLEISENGIDDSGVKSLIELSQLTKLDIDHNEIRTEGCKCISQ 120
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
KNL L + G+ + G+K I +L LT L+ ++ ++ I+ L L+SLN+ +
Sbjct: 121 MKNLTDLSVGLNGIDEEGIKFICELKQLTNLSAHAIQIVSVDGVQSITSLKQLISLNIGD 180
Query: 431 SRITSAGLRHLKPLKNLRSLTLESC 455
+ I AG + + +K L++L + S
Sbjct: 181 NWIGDAGAKVISEMKQLKTLYMHST 205
>gi|116621127|ref|YP_823283.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
gi|116224289|gb|ABJ82998.1| hypothetical protein Acid_2008 [Candidatus Solibacter usitatus
Ellin6076]
Length = 248
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 17/225 (7%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+++D E SR+T L + L + D LV+L L L+CL L+ T V R L
Sbjct: 38 ITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGVTGDFTRLLG-- 95
Query: 300 TNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
T L + L TG D R LA +L+ + + +TD GLAA+ +L +
Sbjct: 96 TPLRDVRLEGCRRTG--DACARSLARFPTLRQVEMHMTGLTDDGLAAMAALP--LEVLWL 151
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G RITD G + F NLR L+IC +TD GV+ + L L +L L+++ ++D ++E+
Sbjct: 152 GPRITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRS-RVSDASIEV 210
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+S TGL LNV+ + IT+ GL LK L L C++ D
Sbjct: 211 LSQFTGLRELNVNYTEITAQGLARLK-------LALPECRLVEPD 248
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 8/215 (3%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LE L I W IT+ ++P+S +T L + + V D + +L+ L++L LNL V
Sbjct: 28 LEELVI-WGGAITNDRLEPVSRMTWLTGVGLGEVPVDDGVLVHLQPLRELECLNLAYTGV 86
Query: 217 TAACLDSLSALGS-LFYLNLNRCQLSDDGCEK-FSRLTNLESLNLDSCGIGDEGLVNLTG 274
T D LG+ L + L C+ + D C + +R L + + G+ D+GL +
Sbjct: 87 TG---DFTRLLGTPLRDVRLEGCRRTGDACARSLARFPTLRQVEMHMTGLTDDGLAAMAA 143
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L+ L L ++ G+ + G NL +++ I+D +R LAGL L+ L L
Sbjct: 144 L-PLEVLWLG-PRITDRGMETIGGFANLRHLDICTHLITDEGVRALAGLQQLQVLWLTRS 201
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
+++D + L+ TGL L++ IT G A L+
Sbjct: 202 RVSDASIEVLSQFTGLRELNVNYTEITAQGLARLK 236
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +GM+ G NL LD+ CT + G+ L GL +L+ L + + ++D+ ++ L
Sbjct: 155 ITDRGMETIGGFANLRHLDI--CTHLITDEGVRALAGLQQLQVLWLT-RSRVSDASIEVL 211
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S T L+ L ++ +++T G+A LK
Sbjct: 212 SQFTGLRELNVNYTEITAQGLARLK 236
>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]
Length = 601
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 122/451 (27%), Positives = 213/451 (47%), Gaps = 27/451 (5%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE F+ +++++ L + V+ +W+ + + L + L+ +V S + L S L
Sbjct: 65 LEVFQH-SVEEIDLSGHIAVDAEWLAYLGA-FRYLRVLKLADCKNVNSSAVWALSGMSTL 122
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 123 KELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAISSLINLRLLDLGGVRF 181
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L L
Sbjct: 182 TDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPIL 235
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL--TNLESLNLDS 261
L LN+ C + + C L L L ++ + E FS + ++L L++ S
Sbjct: 236 LTLRCLNMSNCTIHSICNGEFQVLIHLEKLVISAASFGNID-EVFSSILPSSLTYLDMSS 294
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKL 320
C L L + NL+ L+LS +++ S + +++ + NL ++LS + ++ +L L
Sbjct: 295 C--SSSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVL 352
Query: 321 AG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-----GARITDS----GAAYLRN 370
AG + SL +L+L +I D+ L ++ + L L+L G + +S + L
Sbjct: 353 AGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEE 412
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
K L SL + L D + + +L L L + L+D L +S + L+ L
Sbjct: 413 LKYLESLNLNNTQLMDDVIPPLASFRALKYLFLKSDF-LSDPALHALSSASNLIHLGFCG 471
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ +++ GLR P LR L L C + D
Sbjct: 472 NILSTTGLRKFVPPATLRMLDLSGCWILTGD 502
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 170/373 (45%), Gaps = 29/373 (7%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 82 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRCSKISDAGIKHI 141
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 142 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 201
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+++++G T+L LN I + L L L+CL +S+ + S
Sbjct: 202 GSEITNEGASVLIAFTSLSFLN-----ISWTRVTCLPILLTLRCLNMSNCTIHSICNGEF 256
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDL 355
L +LE + +S S G++ ++ SL LD + + L L ++ L HLDL
Sbjct: 257 QVLIHLEKLVIS--AASFGNIDEVFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHLDL 314
Query: 356 FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKT 413
+RI Y+ N NL L + +T + + + SLT L+L+ + D
Sbjct: 315 SYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHT-KIDDSA 373
Query: 414 LELISGLTGLVSLNVSNS---------RITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
L IS + L LN+S + + L L+ LK L SL L + ++ +D+
Sbjct: 374 LLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALEELKYLESLNLNNTQLM-DDV-- 430
Query: 465 LQSRDLPNLVSFR 477
+P L SFR
Sbjct: 431 -----IPPLASFR 438
>gi|290977411|ref|XP_002671431.1| leucine rich repeat protein [Naegleria gruberi]
gi|284085000|gb|EFC38687.1| leucine rich repeat protein [Naegleria gruberi]
Length = 389
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 140/326 (42%), Gaps = 29/326 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L+S+D +C G + + + LTSL NN + QG+K L NL +L
Sbjct: 93 LKSYDQLRSVDIGYCY---IGNSQTISEMKQLTSLDID-NNCVDEQGVKLIGELHNLTRL 148
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ CN I K +SG+ ++ L +S S G
Sbjct: 149 NI-------------------------GCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEG 183
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
+ L+ LT N+ G + S+ L L L++ Q+ +G + S+L L
Sbjct: 184 AKLMSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTK 243
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L + GIG EG +++ L +L L + Q+GS G + +S L L + + I
Sbjct: 244 LYISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEG 303
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
++ LS+LK L + QI D G +++ L LT L++ I D GA + K L
Sbjct: 304 ANSISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTR 363
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLN 402
L I + D G K + + +L+N
Sbjct: 364 LHISCNRIGDQGAKLLNRMKINSLIN 389
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 31/306 (10%)
Query: 130 LINLVKLDLERC----TRIHGGLVNLKGLMKLESLNIKWC-------------------- 165
L N+ K+ L C I G + LK +L S++I +C
Sbjct: 68 LHNISKIKLRACDDYLESIKGLMEILKSYDQLRSVDIGYCYIGNSQTISEMKQLTSLDID 127
Query: 166 -NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL--EGCPVTAACLD 222
NC+ + +K + L NL L I C+++ G + G++++ LN+ G V A L
Sbjct: 128 NNCVDEQGVKLIGELHNLTRLNIGCNRIGLEGFKSISGMKQMRDLNVSSSGAGVEGAKL- 186
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+S L L N++ ++ ++G + L L L++ S IG EG +++ L L L
Sbjct: 187 -MSQLKHLTKFNISGNEIGEEGAKSIGELKWLTMLDICSNQIGAEGAKSISQLERLTKLY 245
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+S +G G + +S L++L ++ + I + ++ L L L +D+ +I G
Sbjct: 246 ISGNGIGPEGAQSISQLSHLTTLFIGGNQIGSKGSKSISQLKRLTILYIDSNEIGSEGAN 305
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
+++ L+ L L + +I D GA + K+L +LEI + D G K I L LT L+
Sbjct: 306 SISQLSNLKELYISDNQIGDEGAKSISQLKHLTTLEILRNEIGDQGAKSISQLKQLTRLH 365
Query: 403 LSQNCN 408
+S CN
Sbjct: 366 IS--CN 369
>gi|290996590|ref|XP_002680865.1| predicted protein [Naegleria gruberi]
gi|284094487|gb|EFC48121.1| predicted protein [Naegleria gruberi]
Length = 304
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 143/297 (48%), Gaps = 10/297 (3%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLM 155
+++ L ++T LSF + + K F+ L NL LDL E T H ++L M
Sbjct: 2 IDYFPTLESVTDLSFNHH-QVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSM 60
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+ LNI +C I + +S + L+SL + ++ +AYLK L L LN P
Sbjct: 61 R--RLNI-FCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNC--SP 115
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ LS + SL L LN ++ E S+LT+L L L + I +G L+ +
Sbjct: 116 DSYGTSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNI 175
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+ L LS + +GL ++ L NL +NLS+ G+SD + L L L LNL+
Sbjct: 176 SSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNN 235
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
I D G ++ + L +L L +IT +GA YL N +L SL++ L D ++ I
Sbjct: 236 IEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDLRENKL-DYKIEKI 291
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 4/265 (1%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCEKFSRLTNLE 255
I Y L+ +T L+ V S L +L L+L+ +L +D ++ S + ++
Sbjct: 2 IDYFPTLESVTDLSFNHHQVRITNTKIFSKLKNLTALDLSYNELVTDAHVKEISLIPSMR 61
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
LN+ IG + +V ++ + L+ L L + ++ + + +L LTNL+ +N S S G
Sbjct: 62 RLNIFCTDIGKQSIVYISEMKLLESLILGELRLEAESVAYLKKLTNLKELNCS--PDSYG 119
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+ L+ + SL SL L+ + + + ++ LT L HL L+ + I GA +L N +
Sbjct: 120 TSAHLSEMKSLNSLILNVKYNKEEDIENISKLTSLNHLKLWNSNINSKGAEFLSNISSFT 179
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
SL + G + DAG+ +I L++LT LNLS N L+D + + L L LN++ + I
Sbjct: 180 SLNLSGNVIRDAGLVNIGKLANLTFLNLSYNG-LSDSGITNLGNLRKLTDLNLNGNNIED 238
Query: 436 AGLRHLKPLKNLRSLTLESCKVTAN 460
G + + +L+ L L + ++T N
Sbjct: 239 QGAKIISKFSHLKYLQLRNNQITKN 263
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG--- 123
+D+ ++++ + L+SL +++ + +L+ L+NL L+ ++ T+
Sbjct: 68 TDIGKQSIVYISEMKLLESLILG-ELRLEAESVAYLKKLTNLKELNCSPDSYGTSAHLSE 126
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN-IK-WCNCITDSDMKPLSGLTN 181
MK+ LI VK + E +++ + KL SLN +K W + I + LS +++
Sbjct: 127 MKSLNSLILNVKYNKEE---------DIENISKLTSLNHLKLWNSNINSKGAEFLSNISS 177
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
SL +S + + D+G+ + L LT LNL ++ + + +L L L LNLN +
Sbjct: 178 FTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYNGLSDSGITNLGNLRKLTDLNLNGNNIE 237
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
D G + S+ ++L+ L L + I G L+ L +L L+L + ++
Sbjct: 238 DQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSLDLRENKL 284
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 48 WMDVIASQG-------SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
W I S+G SS S++LSG+ + D+GL+++ +NL L+ ++ +SD G+
Sbjct: 160 WNSNINSKGAEFLSNISSFTSLNLSGNVIRDAGLVNIGKLANLTFLNLSYN-GLSDSGIT 218
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+L L LT L+ NN I QG K + +L L L G L L L SL
Sbjct: 219 NLGNLRKLTDLNLNGNN-IEDQGAKIISKFSHLKYLQLRNNQITKNGANYLSNLNSLYSL 277
Query: 161 NIK 163
+++
Sbjct: 278 DLR 280
>gi|290984286|ref|XP_002674858.1| predicted protein [Naegleria gruberi]
gi|284088451|gb|EFC42114.1| predicted protein [Naegleria gruberi]
Length = 385
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 28/219 (12%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+L NL +LN+ SC IG+EG + L NL L++ + +GS G+++++ L+NL S+N+
Sbjct: 181 KLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYN 240
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I +++ L +LK+LN+D I D G ++ L LT L+++ I GA +
Sbjct: 241 NNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAIS 300
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
NLR+L I + + G K I S LT L SLN+S
Sbjct: 301 KLGNLRALTIYNNYIGEEGAKEI-------------------------SKLTNLTSLNIS 335
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKV---TANDIKRL 465
N+ I G + + L NL L +++ + A +I++L
Sbjct: 336 NNNIGDEGAKEITKLSNLTGLKIDNNNIGYEAAKEIRQL 374
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 26/228 (11%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L +L LN+ C + ++G ++ ++L+NL L +D+ IG EG+ + L NL L +
Sbjct: 179 IGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNV 238
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ +G+ G + + L N LK+LN+D I D G
Sbjct: 239 YNNNIGTEGAKEIGKLLN------------------------LKTLNIDNNYIGDEGAQE 274
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ L LT L+++ I GA + NLR+L I + + G K I L++LT LN+
Sbjct: 275 ISKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNI 334
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSL 450
S N N+ D+ + I+ L+ L L + N+ I + ++ LKNL+ L
Sbjct: 335 SNN-NIGDEGAKEITKLSNLTGLKIDNNNIGYEAAKEIRQLLKNLKYL 381
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 142/292 (48%), Gaps = 34/292 (11%)
Query: 64 LSGSDVTDSGLIHLK-----------DCSNLQSLDFNFCI---QISDGGLEHLRGLS-NL 108
+S SD T+S L +++ + N +++ F CI S G + L+G++ N
Sbjct: 87 ISDSDFTESKLENIQFILCKFNNSNFNYENFENVTFTDCIYDDNCSFSGEKQLKGIALNQ 146
Query: 109 TSLSF----RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
S+ F ++NN I IN + L+ ++ + L L+ +LNI
Sbjct: 147 NSIKFEILDQKNNWI-----------INYLDLNNNVGYKLAKFIGKLNNLI---TLNITS 192
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN I + K ++ L+NL L+I + + G+ Y+ L LT LN+ + +
Sbjct: 193 CN-IGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLNVYNNNIGTEGAKEI 251
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
L +L LN++ + D+G ++ S+L NL SLN+ IG EG ++ L NL+ L +
Sbjct: 252 GKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTIY 311
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+ +G G + +S LTNL S+N+S I D +++ LS+L L +D I
Sbjct: 312 NNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLKIDNNNI 363
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
++ L L LN+ C + ++ L +L L ++ + +G + ++L+NL SLN
Sbjct: 178 FIGKLNNLITLNITSCNIGEEGSKEIAKLSNLTELKIDNNNIGSEGVKYIAQLSNLTSLN 237
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ + IG EG + L NLK L + + +G G + +S L NL S+N+ I +
Sbjct: 238 VYNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEISKLINLTSLNMYKNSIGYEGAK 297
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ L +L++L + I + G ++ LT LT L++ I D GA + NL L+
Sbjct: 298 AISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNISNNNIGDEGAKEITKLSNLTGLK 357
Query: 379 ICGGGLTDAGVKHIKDL 395
I + K I+ L
Sbjct: 358 IDNNNIGYEAAKEIRQL 374
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL +L+ C I + G + + LSNLT L NN I ++G+K A L NL L++
Sbjct: 183 NNLITLNITSC-NIGEEGSKEIAKLSNLTELKIDNNN-IGSEGVKYIAQLSNLTSLNV-- 238
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
+ N I K + L NLK+L I + + D G +
Sbjct: 239 -----------------------YNNNIGTEGAKEIGKLLNLKTLNIDNNYIGDEGAQEI 275
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L LT LN+ + ++S LG+L L + + ++G ++ S+LTNL SLN+
Sbjct: 276 SKLINLTSLNMYKNSIGYEGAKAISKLGNLRALTIYNNYIGEEGAKEISKLTNLTSLNIS 335
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+ IGDEG +T L NL L++ + +G + + L
Sbjct: 336 NNNIGDEGAKEITKLSNLTGLKIDNNNIGYEAAKEIRQL 374
>gi|443723521|gb|ELU11898.1| hypothetical protein CAPTEDRAFT_102929 [Capitella teleta]
Length = 439
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 169/326 (51%), Gaps = 45/326 (13%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM-KPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQK-L 206
++G+ L SLN+ C +TD M LS L +L SL +S C +TDS IA + G QK L
Sbjct: 131 VEGVPGLRSLNLSGCYNVTDVIMTHALSHDLPSLVSLNLSLCKVITDSTIACIAGHQKQL 190
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIG 265
L L GC L A G L+NL LNL SC I
Sbjct: 191 QELELGGCAQITTNALLLLACG----------------------LSNLRRLNLRSCCKIT 228
Query: 266 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISD 314
DEG+ LTG + L+ + L D Q + L++LS G + L+S+NLSF TG++D
Sbjct: 229 DEGVAYLTGQSHTVPTGTAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNLSFCTGVTD 288
Query: 315 GSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRN- 370
L L+ + SL+ L+L A I+D G+ L LT L+ L L F RITD+ ++ +
Sbjct: 289 SGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDTALLHISHG 348
Query: 371 FKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNV 428
+L +L +C ++D G++H I + LN+ Q LTD +LELI+ T L ++++
Sbjct: 349 LIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNFTQLHTIDI 408
Query: 429 SN-SRITSAGLRHLKPLKNLRSLTLE 453
+RIT G++HL+ ++ ++ +E
Sbjct: 409 YGCTRITKLGVKHLRDQPHISAINME 434
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 23/273 (8%)
Query: 130 LINLVKLDLERCTRIHGGLVN-LKGLMK-LESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
L +LV L+L C I + + G K L+ L + C IT + + L+ GL+NL+ L
Sbjct: 161 LPSLVSLNLSLCKVITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLN 220
Query: 187 I-SCSKVTDSGIAYLKGLQK--------LTLLNLEGC-PVTAACLDSLS-ALGSLFYLNL 235
+ SC K+TD G+AYL G L + L+ C +T L LS L +NL
Sbjct: 221 LRSCCKITDEGVAYLTGQSHTVPTGTAMLEHIVLQDCQKITDVSLKYLSLGFSQLKSVNL 280
Query: 236 NRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSS 291
+ C ++D G E SR+ +L+ L+L +C GI D G+ L GL L L LS ++ +
Sbjct: 281 SFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITDT 340
Query: 292 GLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALT-SL 347
L H+S GL +L +++L ISD ++ L G S + LN+ ++TD L + +
Sbjct: 341 ALLHISHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQNF 400
Query: 348 TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
T L +D++G RIT G +LR+ ++ ++ +
Sbjct: 401 TQLHTIDIYGCTRITKLGVKHLRDQPHISAINM 433
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 27/281 (9%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G + +T + L+ L SNL+ L+ C +I+D G+ +
Sbjct: 175 ITDSTIACIAGHQKQLQELELGGCAQITTNALLLLACGLSNLRRLNLRSCCKITDEGVAY 234
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L G S+ T M L ++V D ++ T + ++L G +L+S+N
Sbjct: 235 LTGQSHTVP---------TGTAM-----LEHIVLQDCQKITDVSLKYLSL-GFSQLKSVN 279
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C +TDS ++ LS + +L+ L + +C ++D G+ YL +GL +L++L+L C +T
Sbjct: 280 LSFCTGVTDSGLECLSRMPSLQELDLRACDGISDHGVGYLAEGLTRLSVLHLSFCDRITD 339
Query: 219 ACLDSLS-ALGSLFYLNLNRCQLSDDGCEK-FSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
L +S L L L+L C +SD+G + ++ LN+ C + + L
Sbjct: 340 TALLHISHGLIHLTALSLCDCSISDEGIQHLIGSSQDIVKLNIGQCDRLTDASLELIAQ- 398
Query: 277 NLKCLELSD----TQVGSSGLRHLSGLTNLESINLSFTGIS 313
N L D T++ G++HL ++ +IN+ S
Sbjct: 399 NFTQLHTIDIYGCTRITKLGVKHLRDQPHISAINMELFAAS 439
>gi|414878156|tpg|DAA55287.1| TPA: hypothetical protein ZEAMMB73_170021 [Zea mays]
Length = 663
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 227/473 (47%), Gaps = 48/473 (10%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L + L+ L + C+
Sbjct: 111 RSVCLARANGVGWRGLEALVAACPKLEAVDLSHCVSAGDREAAALAAAAGLRELRLDKCL 170
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 171 AVTDMGLAKVAVGCPRLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLRS 230
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------YLK 201
+ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G+A +L+
Sbjct: 231 ISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSHGLASLIDGRNFLQ 290
Query: 202 GL---------------------QKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQ 239
L + LT L L+G V+ + L+++ + L + L++C
Sbjct: 291 KLYAADCLHEIGQRFVSKLATLKETLTTLKLDGLEVSDSLLEAIGESCNKLVEIGLSKCS 350
Query: 240 -LSDDGCEKF-SRLTNLESLNLDSCGIG-DEGLVNLTGLCN-LKCLEL-SDTQVGSSGLR 294
++D+G +R ++L +++L C + + L ++ G C L+CL L S + + GL+
Sbjct: 351 GVTDEGISSLVARCSDLRTIDLTCCNLSTNNALDSIAGNCKMLECLRLESCSLINEKGLK 410
Query: 295 HLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LT 351
++ NL+ I+L+ G+ D +L LA S L+ L L I+D G+A ++S G L
Sbjct: 411 RIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFISSNCGKLV 470
Query: 352 HLDLFG-ARITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL+ + ITD G A L N K ++ L +C +TD G+ H+ L LT L L
Sbjct: 471 ELDLYRCSSITDDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVR 530
Query: 409 LTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G L+ L++ + AGL L NLR LT+ C+VT
Sbjct: 531 ITGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 583
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 404 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRVLKLGLCSSISDKGIAFIS 463
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G +++ LN+
Sbjct: 464 SNCGKLVELDLYRCSSITDDGLAALAN-----------------------GCKRIKLLNL 500
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C ++T GI+ V C
Sbjct: 501 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 543
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
+L L+L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 544 ------KNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 595
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ G L+KL L LK++
Sbjct: 596 CLQ--DIK-----MVHLSWVS-IEGFEIALRAAC-GRLKKLKMLCGLKTV 636
>gi|51850107|dbj|BAD42395.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 538
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 16/336 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC----ITDSDMKPLSGLTNLKSLQI 187
+L LDL RC G + G+ L L + N I + L+ L SL +
Sbjct: 145 SLKALDLSRCR----GPITAAGIAHLSRLPLVRLNVRNKRIGAEGARLLANHPTLTSLNV 200
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ G L +LT LN+ G + A +L+A +L L+++ ++ D+G +
Sbjct: 201 SNGRIGPEGAQALAANTRLTTLNVSGNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARE 260
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ T L +L+ + GIG +G L L L + ++G +G+ L+ L ++N+
Sbjct: 261 LAACTQLTTLDANRNGIGVDGATALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNV 320
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
TG+ ++ LA +L L LD I + G AL + T LT L L +RI GA
Sbjct: 321 ESTGVGADGVKALAASKTLTWLRLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQA 380
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSL 426
L L +L++ + DAGV+ + ++L L++ +N NL D + + L +G T L +L
Sbjct: 381 LAANTKLTTLDLGYNDIGDAGVRTLSANATLVWLSVRRN-NLEDASAVSLAAGKT-LTTL 438
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
++S + I G + L + TL + V++NDI
Sbjct: 439 DISGNGIQDQGAKALAA-----NPTLTTLDVSSNDI 469
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 127/469 (27%), Positives = 213/469 (45%), Gaps = 43/469 (9%)
Query: 1 MLPRDISQQI--------FNELVYSRCLTEVSLEA-FRDCALQD-------LCLGQYPGV 44
LP DI ++I L + + ++EA R+ ++D L G YP
Sbjct: 66 QLPPDIFREIARRSDPLTVQRLRVASKPVKAAIEADMRELVIKDRAGLAGVLRAGNYP-- 123
Query: 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLR 103
+L + L+G+ TD L L ++L++LD + C I+ G+ HL
Sbjct: 124 -------------ALEKLTLAGT-FTDDDLRGLP--ASLKALDLSRCRGPITAAGIAHLS 167
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L L L+ R N I A+G + A L L++ G L +L +LN+
Sbjct: 168 RLP-LVRLNVR-NKRIGAEGARLLANHPTLTSLNVSNGRIGPEGAQALAANTRLTTLNVS 225
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL--NLEGCPVTAACL 221
N I + K L+ L+SL +S +++ D G L +LT L N G V A
Sbjct: 226 -GNRIGVAGAKALAANQTLRSLDVSDNRIGDEGARELAACTQLTTLDANRNGIGVDGAT- 283
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+L+A +L L + ++ D G + L +LN++S G+G +G+ L L L
Sbjct: 284 -ALAASRTLTSLAIGGNEIGDAGVLALAANARLTTLNVESTGVGADGVKALAASKTLTWL 342
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L +G++G L+ T+L +++L + I + LA + L +L+L I D G+
Sbjct: 343 RLDGNDIGNAGATALAASTSLTTLHLEHSRIGAEGAQALAANTKLTTLDLGYNDIGDAGV 402
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L++ L L + + D+ A L K L +L+I G G+ D G K + +LT L
Sbjct: 403 RTLSANATLVWLSVRRNNLEDASAVSLAAGKTLTTLDISGNGIQDQGAKALAANPTLTTL 462
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
++S N ++ + ++ LVSL++ N+R+ +G R L + L SL
Sbjct: 463 DVSSN-DIRNAGARALAANARLVSLDLRNNRMEESGTRALLANRTLSSL 510
>gi|290977840|ref|XP_002671645.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
gi|284085215|gb|EFC38901.1| member of the leucine-rich repeat protein family [Naegleria
gruberi]
Length = 392
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 141/295 (47%), Gaps = 24/295 (8%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L L + + + D G++Y+ L KLT LN+ +++ LS + L YL+++ ++
Sbjct: 109 LVDLDMKMNNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIG 168
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+DG KF C G+ L L + ++G G++ + L
Sbjct: 169 EDGS-KFI------------C----------NGIRQLTHLNIYYNEIGVRGVKFIGALKQ 205
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L S+N+ I D + L + L LN+ I G ++ +T LT+L++ I
Sbjct: 206 LTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIG 265
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D GA Y+ K L L+I L++ G K+I ++ LT L++ N N+ ++ E I +
Sbjct: 266 DDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSN-NIREEGAEFIGEMK 324
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
L +LN++ + IT G++HL L L SL++ + + D +L S + + +S+
Sbjct: 325 QLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKLLSETMNHHLSY 379
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 121/241 (50%), Gaps = 4/241 (1%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL- 224
N I D + +S LT L L +S ++++ G YL +++LT L++ + +
Sbjct: 117 NNIGDIGVSYISNLTKLTKLNVSYNRISSEGAKYLSKMKQLTYLDISHNKIGEDGSKFIC 176
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ + L +LN+ ++ G + L L SLN+ IGD+G+ +L + L L +S
Sbjct: 177 NGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNIS 236
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ + G + +S +T L ++N+ I D + ++ + L L++ +++ G +
Sbjct: 237 NNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYI 296
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH---IKDLSSLTLL 401
+ + LT+LD+ I + GA ++ K L +L + G +TD G+KH + L SL++
Sbjct: 297 SEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIY 356
Query: 402 N 402
N
Sbjct: 357 N 357
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 27/276 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I D G+ ++ L+ LT L+ N I+++G K + + L LD+
Sbjct: 119 IGDIGVSYISNLTKLTKLNVSYN-RISSEGAKYLSKMKQLTYLDISH------------- 164
Query: 154 LMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I + K + +G+ L L I +++ G+ ++ L++LT LN+
Sbjct: 165 ------------NKIGEDGSKFICNGIRQLTHLNIYYNEIGVRGVKFIGALKQLTSLNVG 212
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
G + ++ L + L LN++ + +G + S +T L +LN+ IGD+G +
Sbjct: 213 GNRIGDQGIEHLMRMHQLVDLNISNNNIRVEGAKLVSEMTQLTNLNIRKNIIGDDGAKYI 272
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ + L L++ + + G +++S + L ++++ I + + + L +LNL+
Sbjct: 273 SEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIRSNNIREEGAEFIGEMKQLTNLNLN 332
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
ITD G+ L L L L ++ I A L
Sbjct: 333 GNYITDEGIKHLCGLYQLVSLSIYNTGIQMEDGAKL 368
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G+EHL + L L+ NN I +G K + + L L++ +
Sbjct: 215 RIGDQGIEHLMRMHQLVDLNISNNN-IRVEGAKLVSEMTQLTNLNIRK------------ 261
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I D K +S + L L I + +++ G Y+ ++ LT L++
Sbjct: 262 -------------NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR 308
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
+ + + + L LNLN ++D+G + L L SL++ + GI E
Sbjct: 309 SNNIREEGAEFIGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGIQME 363
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRR 115
L S+++ G+ + D G+ HL L L+ N I++ G + + ++ LT+L+ R+
Sbjct: 204 KQLTSLNVGGNRIGDQGIEHLMRMHQLVDLNISNNNIRVE--GAKLVSEMTQLTNLNIRK 261
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G K + + L+KLD+ + + G + + L +L+I+ N I + +
Sbjct: 262 -NIIGDDGAKYISEMKQLIKLDIGKNYLSNRGAKYISEMKYLTNLDIR-SNNIREEGAEF 319
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ + L +L ++ + +TD GI +L GL +L L++ +
Sbjct: 320 IGEMKQLTNLNLNGNYITDEGIKHLCGLYQLVSLSIYNTGI 360
>gi|46447283|ref|YP_008648.1| hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400924|emb|CAF24373.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 521
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 4/198 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL L L+NL L+ +T G+
Sbjct: 303 LTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLT 362
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+NL LDL C ++ GL + K L+ L+ LN+ C I D+ + L+ L L+ L +
Sbjct: 363 PLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNL 422
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C+ +TD+G+A+L L L L+L C +T A L L L +L YLNL+ C LS+ G
Sbjct: 423 SQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAG 482
Query: 245 CEKFSRLTNLESLNLDSC 262
+ LT+L+ LNL+ C
Sbjct: 483 LAHLAPLTSLQHLNLEDC 500
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 7/226 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK LQ+ SC +TD+G+A L L L LNL GC
Sbjct: 291 EIEGLNFSENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGC 350
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVN 271
+T A L L+ L +L YL+L C +L+ G F L L+ LNL C I D GL +
Sbjct: 351 KKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAH 410
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSL 329
LT L L+ L LS T + +GL HL L L+ ++LS+ +++ L L L +L+ L
Sbjct: 411 LTPLVALQYLNLSQCTFLTDAGLAHLVPLVALKHLDLSWCNSLTNAGLAHLVHLVALQYL 470
Query: 330 NLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
NL +++ GLA L LT L HL+L + L +FK L
Sbjct: 471 NLSGCIYLSEAGLAHLAPLTSLQHLNLEDCEHFTNARFRLAHFKAL 516
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
S +TD+GL L +NLQ L+ N C +++D GL HL L NL L + +T++G+
Sbjct: 324 SCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGLAHLTPLVNLQYLDLGFCDKLTSKGL 383
Query: 125 KAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
F LI L L+L C I GL +L L+ L+ LN+ C +TD+ + L L LK
Sbjct: 384 GHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQYLNLSQCTFLTDAGLAHLVPLVALK 443
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
L +S C+ +T++G+A+L L L LNL GC ++ A L L+ L SL +LNL C+
Sbjct: 444 HLDLSWCNSLTNAGLAHLVHLVALQYLNLSGCIYLSEAGLAHLAPLTSLQHLNLEDCE 501
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 115/259 (44%), Gaps = 52/259 (20%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG-IGDEGL 269
E +T A L +L +L L L C L+D G LTNL+ LNL+ C + D GL
Sbjct: 299 ENAYLTDAHLLALKNCKNLKVLQLQSCHHLTDTGLACLPSLTNLQYLNLNGCKKLTDAGL 358
Query: 270 VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLK 327
+LT L NL+ L+L ++ S GL H L L+ +NLS I D L L L +L+
Sbjct: 359 AHLTPLVNLQYLDLGFCDKLTSKGLGHFKSLIALQHLNLSGCKFIRDNGLAHLTPLVALQ 418
Query: 328 SLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
LNL +TD GLA L L L HLDL C LT+
Sbjct: 419 YLNLSQCTFLTDAGLAHLVPLVALKHLDL----------------------SWCNS-LTN 455
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
AG+ H+ L +L LNLS G + L + AGL HL PL +
Sbjct: 456 AGLAHLVHLVALQYLNLS-----------------GCIYL-------SEAGLAHLAPLTS 491
Query: 447 LRSLTLESCKVTANDIKRL 465
L+ L LE C+ N RL
Sbjct: 492 LQHLNLEDCEHFTNARFRL 510
>gi|348514973|ref|XP_003445014.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
gi|410918767|ref|XP_003972856.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 400
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 183/377 (48%), Gaps = 59/377 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G + +T + EG +NL L
Sbjct: 181 ----------------------HVSDVGIGHLAGMTRSAA----------EGCLNLEYLT 208
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GLT L +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 209 LQDCQKLTDLS-----LKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSC 263
Query: 334 RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV- 389
I+DTG L T L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 264 DNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + L LN+ Q +TDK LELI+ LT LV +++ ++IT GL + L L
Sbjct: 324 RMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCL 383
Query: 448 RSLTLESCKVTANDIKR 464
+ L L ++T ++ R
Sbjct: 384 KVLNLGLWQMTESEKVR 400
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 55/309 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+G +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGTMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVN 271
+L+ + Y L+L C +SDDG + R + L +LN+ C I D+G
Sbjct: 293 GD--QTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKG--- 347
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 330
LEL LT L I+L T I+ L ++ L LK LN
Sbjct: 348 ---------LELIADH-----------LTQLVGIDLYGCTKITKRGLERITQLPCLKVLN 387
Query: 331 LDARQITDT 339
L Q+T++
Sbjct: 388 LGLWQMTES 396
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 32/242 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G R L N
Sbjct: 89 MPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQYLKN 144
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE + L + I++ L +A GL LKSLNL + R ++D G+ L +T L
Sbjct: 145 LEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNL 204
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+L L ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 205 EYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNLRSC 263
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ + I
Sbjct: 264 DNISDTGTMHLAMGTLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 464 RL 465
R+
Sbjct: 324 RM 325
>gi|406830031|ref|ZP_11089625.1| leucine-rich repeat-containing protein [Schlesneria paludicola DSM
18645]
Length = 306
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 110/212 (51%), Gaps = 8/212 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D+ M + LT L+SL + ++VTD+G+ + L+ L LNL GC VT L SL+ L
Sbjct: 85 IGDAHMGVIGALTQLESLALDHTQVTDAGLQSISSLEHLRELNLAGCSVTDGGLGSLAGL 144
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L LNLN Q++ G S+L LE+L L + + E + L+GL +LK L L+ T+
Sbjct: 145 TELTSLNLNDTQINGLGLVYLSKLNRLEALYLQNTVVDFESIPPLSGLESLKILHLAGTK 204
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLA 342
G +R ++GL +LE + L+ T I D + LA + K L ++ ++D L
Sbjct: 205 TGGGIVRAITGLPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALE 264
Query: 343 ALTSLTGL---THLDLFGARITDSGAAYLRNF 371
+ L L T + + G ++T G LR
Sbjct: 265 PMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 8/227 (3%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S +TD L LT L L P+ A + + AL L L L+ Q++D G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ S L +L LNL C + D GL +L GL L L L+DTQ+ GL +LS L LE+
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS- 363
+ L T + S+ L+GL SLK L+L + + A+T L L L L G I D
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDED 233
Query: 364 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNL 403
A +N + + L + L+DA ++ + DL TL+++
Sbjct: 234 IPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHV 280
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 8/238 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD K L+ L +L ++ S + D+ + + L +L L L+ VT A L S+S
Sbjct: 59 HSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAGLQSIS 118
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L L LNL C ++D G + LT L SLNL+ I GLV L+ L L+ L L +
Sbjct: 119 SLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEALYLQN 178
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
T V + LSGL +L+ ++L+ T G +R + GL SL+ L L+ I D + AL
Sbjct: 179 TVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIKDEDIPALA 238
Query: 346 SLTGL--THLD-LFGARITDSGAAY-----LRNFKNLRSLEICGGGLTDAGVKHIKDL 395
++ H LF + S AA L + K + + G +T GV ++ L
Sbjct: 239 AVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGVVRLRKL 296
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 18/256 (7%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
++L+ ++DD ++ + L +L L IGD + + L L+ L L TQV +G
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDSPIGDAHMGVIGALTQLESLALDHTQVTDAG 113
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L+ +S L +L +NL+ ++DG L LAGL+ L SLNL+ QI GL L+ L L
Sbjct: 114 LQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQINGLGLVYLSKLNRLEA 173
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L + L ++L+ L + G V+ I L SL L L N T
Sbjct: 174 LYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYL----NGTSI 229
Query: 413 TLELISGLTGLVSLN--------VSNSRITSAGLRHLKPLKNLRSLTL---ESCKVTAND 461
E I L +++ N V + ++ A L + PL +L+ TL KVT +
Sbjct: 230 KDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDG 289
Query: 462 IKRLQSRDLP--NLVS 475
+ RL+ + LP N+VS
Sbjct: 290 VVRLR-KLLPEANVVS 304
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 40/242 (16%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L AF AL L L P + D M VI + + L S+ L + VTD+GL + +L+
Sbjct: 69 LTAFP--ALTTLALTDSP-IGDAHMGVIGAL-TQLESLALDHTQVTDAGLQSISSLEHLR 124
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
L+ C ++DGGL L GL+ LTSL+ T+I
Sbjct: 125 ELNLAGC-SVTDGGLGSLAGLTELTSLNLND--------------------------TQI 157
Query: 145 HG-GLVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+G GLV L L +LE+L ++ N + D + + PLSGL +LK L ++ +K + + G
Sbjct: 158 NGLGLVYLSKLNRLEALYLQ--NTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITG 215
Query: 203 LQKLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L L L L G + + +L+A+ L + + LSD E L +L+
Sbjct: 216 LPSLERLYLNGTSIKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEF 275
Query: 258 NL 259
L
Sbjct: 276 TL 277
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V LS +TD L L +L I D + + L+ L SL+ +T
Sbjct: 54 VSLSSHSMTDDAAKQLTAFPALTTLALTDS-PIGDAHMGVIGALTQLESLALDHTQ-VTD 111
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+++ + L +L +L+L C+ GGL +L GL +L SLN+ I + LS L
Sbjct: 112 AGLQSISSLEHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDTQ-INGLGLVYLSKLNR 170
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L++L + + V I L GL+ L +L+L G + +++ L SL L LN +
Sbjct: 171 LEALYLQNTVVDFESIPPLSGLESLKILHLAGTKTGGGIVRAITGLPSLERLYLNGTSIK 230
Query: 242 DDGCEKFSRL-----TNLESLNLDSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGL 293
D+ + + + + L ++ + D L + L +LK + + T+V G+
Sbjct: 231 DEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGTKVTKDGV 290
Query: 294 RHLSGL 299
L L
Sbjct: 291 VRLRKL 296
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 14/183 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D + I+S L ++L+G VTD GL L + L SL+ N QI+ GL +L
Sbjct: 109 VTDAGLQSISSL-EHLRELNLAGCSVTDGGLGSLAGLTELTSLNLNDT-QINGLGLVYLS 166
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNI 162
L+ L +L + +N + + + +GL +L L L T+ GG+V + GL LE L +
Sbjct: 167 KLNRLEAL-YLQNTVVDFESIPPLSGLESLKILHLA-GTKTGGGIVRAITGLPSLERLYL 224
Query: 163 KWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIA---YLKGLQKLTLLNLEGC 214
+ I D D+ L+ + + K L + + ++D+ + L L++ TL+++ G
Sbjct: 225 NGTS-IKDEDIPALAAVLAQNCPHFKGLFVEKTALSDAALEPMHPLADLKEFTLIHVHGT 283
Query: 215 PVT 217
VT
Sbjct: 284 KVT 286
>gi|406835554|ref|ZP_11095148.1| ribonuclease inhibitor [Schlesneria paludicola DSM 18645]
Length = 392
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 139/291 (47%), Gaps = 14/291 (4%)
Query: 190 SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
S++ DS I L +GL ++T +N + VT+A S+S L L L L+ +++++ C
Sbjct: 72 SEINDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEAC 131
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
EK + L LE L L + D G+ L+ L NLK LELS + +G + + LE +
Sbjct: 132 EKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYL 191
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ T + D SL + +L SL L ITD GL AL L G+ L+ I G
Sbjct: 192 EIRRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGL 251
Query: 366 AYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLT 421
A+ + KNL+ L + L G K I + S+ L L + L D+ L ++ G+
Sbjct: 252 AHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQLDDEGLMTMVRGMK 311
Query: 422 GLVSLNVSN--SRITSAGLRHLKPLKNLRSLTLESCKVTAND----IKRLQ 466
L LN S S + G + L K+L L + C +D IK+++
Sbjct: 312 NLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMK 362
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 134/311 (43%), Gaps = 15/311 (4%)
Query: 168 ITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
I DS + L+ GL + + S VT + A + L KL L L VT +
Sbjct: 74 INDSAITQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRVTNEACEK 133
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ L +L L L+ + D G SRL+NL+SL L C + G + L+ LE+
Sbjct: 134 IAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFPALEYLEI 193
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
T + L + L S+ LS I+D L L L ++ L + I GLA
Sbjct: 194 RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETGIHGWGLAH 253
Query: 344 LTSLTG---LTHLDLFGARITDSGAAYLRNFKNLRSL---EICGGGLTDAG-VKHIKDLS 396
G L L LF + GA + NFK++ L EI L D G + ++ +
Sbjct: 254 AQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIP--QLDDEGLMTMVRGMK 311
Query: 397 SLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLES 454
+L LN S+ +L + + G L L++ SRI + +K +KNL+ L +
Sbjct: 312 NLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPFIKKMKNLKILRVHG 371
Query: 455 CKVTANDIKRL 465
++A + L
Sbjct: 372 TSISARGMAEL 382
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 4/192 (2%)
Query: 278 LKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
LK E++D+ + + L LS GL + IN F+ ++ + ++ LS L+ L L + ++
Sbjct: 69 LKPSEINDSAI--TQLTSLSEGLNEITEINADFSTVTSAAFASISKLSKLRQLRLSSTRV 126
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
T+ + L L L L + D G A L NL+SLE+ LT AG + I
Sbjct: 127 TNEACEKIAELPALEVLILSDTVVDDVGVAALSRLSNLKSLELSRCHLTRAGFQAIGAFP 186
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L L + + NL D +L+L+ LVSL +SN+ IT GL L L + L
Sbjct: 187 ALEYLEI-RRTNLDDVSLDLVCNAKTLVSLRLSNNPITDQGLDALGKLPGIEVLEFNETG 245
Query: 457 VTANDIKRLQSR 468
+ + Q R
Sbjct: 246 IHGWGLAHAQKR 257
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 14 LVYSRC-LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS 72
L SRC LT +A + + ++D +D++ + +L+S+ LS + +TD
Sbjct: 167 LELSRCHLTRAGFQAIGAFPALEYLEIRRTNLDDVSLDLVCN-AKTLVSLRLSNNPITDQ 225
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFAG 129
GL L ++ L+FN I GL H + G NL LS + + G KA
Sbjct: 226 GLDALGKLPGIEVLEFNET-GIHGWGLAHAQKRGGGKNLKELSLFK-CPLDGMGAKAIGN 283
Query: 130 LINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDM------KPLSGLTNL 182
++ KL L ++ GL+ + MK N+K+ NC + K L G +L
Sbjct: 284 FKSVEKLVLGEIPQLDDEGLMTMVRGMK----NLKYLNCSKTPSLFGTLGFKALLGSKDL 339
Query: 183 KSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ L I CS++ D + ++K ++ L +L + G ++A + L+
Sbjct: 340 EELHIGECSRIGDDAVPFIKKMKNLKILRVHGTSISARGMAELA 383
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 59/266 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + V D G+ L SNL+SL+ + C ++ G + + L L RR N
Sbjct: 145 LSDTVVDDVGVAALSRLSNLKSLELSRC-HLTRAGFQAIGAFPALEYLEIRRTN------ 197
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++ V LDL + N K L+ L N N ITD + L L ++
Sbjct: 198 -------LDDVSLDL---------VCNAKTLVSLRLSN----NPITDQGLDALGKLPGIE 237
Query: 184 SLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-Q 239
L+ + + + G+A+ + G + L L+L CP+ ++ S+ L L Q
Sbjct: 238 VLEFNETGIHGWGLAHAQKRGGGKNLKELSLFKCPLDGMGAKAIGNFKSVEKLVLGEIPQ 297
Query: 240 LSDDG---------------CEKFSRL------------TNLESLNLDSCG-IGDEGLVN 271
L D+G C K L +LE L++ C IGD+ +
Sbjct: 298 LDDEGLMTMVRGMKNLKYLNCSKTPSLFGTLGFKALLGSKDLEELHIGECSRIGDDAVPF 357
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLS 297
+ + NLK L + T + + G+ L+
Sbjct: 358 IKKMKNLKILRVHGTSISARGMAELA 383
>gi|260804809|ref|XP_002597280.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
gi|229282543|gb|EEN53292.1| hypothetical protein BRAFLDRAFT_260896 [Branchiostoma floridae]
Length = 398
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 179/365 (49%), Gaps = 59/365 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+V L+L C T I + + L
Sbjct: 69 RGIRKVQILSLRRSLSYVVQGMS------NIVSLNLSGCYNLTDIGLSHAFTQDVPSLTE 122
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L + C +T++G+ GL KL LNL C
Sbjct: 123 LNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCR- 181
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G S ++ + EG ++L LC
Sbjct: 182 ----------------------HISDVGIGHLSGISKNAA----------EGCLHLEHLC 209
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GL L+S+NLSF GISDG + LA +SSLK LNL +
Sbjct: 210 LQDCQKLTDL-----ALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSC 264
Query: 334 RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGV- 389
I+D G+A L + ++HLD+ F ++ DS ++ + +L SL + ++D G+
Sbjct: 265 DNISDIGIAHLADGSATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLN 324
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + LT L++ Q +TDK L LI+ LT L ++++ ++IT+AGL + L L
Sbjct: 325 RMVRSMHELTTLDIGQCYKITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRL 384
Query: 448 RSLTL 452
L L
Sbjct: 385 SVLNL 389
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 172/346 (49%), Gaps = 70/346 (20%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+++S++LSG ++TD GL H +D +L L+ + C QI+D L +
Sbjct: 91 SNIVSLNLSGCYNLTDIGLSHAFTQDVPSLTELNLSLCKQITDSSLGRI----------- 139
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDS 171
AQ +K NL +LDL C I G L+ GL+KL LN++ C I+D
Sbjct: 140 -------AQYLK------NLERLDLGGCCNITNTGLLLCAWGLLKLRYLNLRSCRHISDV 186
Query: 172 DMKPLSGLT--------NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACL 221
+ LSG++ +L+ L + C K+TD + ++ KGLQ+L LNL C
Sbjct: 187 GIGHLSGISKNAAEGCLHLEHLCLQDCQKLTDLALKHVSKGLQRLKSLNLSFC------- 239
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLK 279
C +SD G +++++L+ LNL SC I D G+ +L G +
Sbjct: 240 ----------------CGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADGSATIS 283
Query: 280 CLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQ 335
L++S +VG S L H++ GL +L S++L ISD L R + + L +L++ +
Sbjct: 284 HLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDIGQCYK 343
Query: 336 ITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
ITD GL + +LT LT++DL+G +IT +G + L L +
Sbjct: 344 ITDKGLGLIADNLTQLTNIDLYGCTKITTAGLERIMQLPRLSVLNL 389
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 39/293 (13%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCS----NLQSL 86
+L +L L + D + IA +L +DL G ++T++GL+ C+ L+ L
Sbjct: 119 SLTELNLSLCKQITDSSLGRIAQYLKNLERLDLGGCCNITNTGLLL---CAWGLLKLRYL 175
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ C ISD G+ HL G+S A G ++L L L+ C ++
Sbjct: 176 NLRSCRHISDVGIGHLSGISK-----------------NAAEGCLHLEHLCLQDCQKLTD 218
Query: 147 -GLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-G 202
L ++ KGL +L+SLN+ +C I+D M L+ +++LK L + SC ++D GIA+L G
Sbjct: 219 LALKHVSKGLQRLKSLNLSFCCGISDGGMMYLAKMSSLKELNLRSCDNISDIGIAHLADG 278
Query: 203 LQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNL 259
++ L++ C V + L ++ L L L+L C +SD+G + R + L +L++
Sbjct: 279 SATISHLDVSFCDKVGDSALGHIAHGLYHLHSLSLGSCNISDEGLNRMVRSMHELTTLDI 338
Query: 260 DSC-GIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
C I D+GL NLT L N+ T++ ++GL + L L +NL
Sbjct: 339 GQCYKITDKGLGLIADNLTQLTNIDLYGC--TKITTAGLERIMQLPRLSVLNL 389
>gi|290991310|ref|XP_002678278.1| predicted protein [Naegleria gruberi]
gi|284091890|gb|EFC45534.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 134/274 (48%), Gaps = 5/274 (1%)
Query: 149 VNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+N + L ++ ++N +K C+CI D + L NL +L ++C K+ D G+ + +++LT
Sbjct: 71 INGQFLQRIVAVNGMKKCDCIPFLDQ--VFDLKNLTTLDVNCMKIKDEGVKIISEMKQLT 128
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
LN+ ++ + +S + L LN++R + +G S + L +LN+ GI E
Sbjct: 129 NLNVGSSGISVEGVKYISGMNQLTNLNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAE 188
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
G ++ + L CL + + G HL + L ++N++ IS + ++ + SL
Sbjct: 189 GTKYISEMKELTCLNIMSNAIHDKGAEHLRQMPKLNTLNINSNSISVEGAKFISEIQSLT 248
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+L++ I D G+ ++ + LT L I + GA ++ + L SL I +
Sbjct: 249 NLDIGFNTIGDDGVKFISKMEKLTKLYTMYINIGEKGAKHISEMEQLTSLNINSNNVGTE 308
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
G K++ ++ LT +N+ N DK + I T
Sbjct: 309 GAKYLCEMKHLTYMNICNNN--VDKQSQFIKDAT 340
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L ++ L +L +L+++ +I D G+ ++ + LT+L++ + I+ G Y+ L +
Sbjct: 94 LDQVFDLKNLTTLDVNCMKIKDEGVKIISEMKQLTNLNVGSSGISVEGVKYISGMNQLTN 153
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L I + G +++ ++ LT LN+ N + T + IS + L LN+ ++ I
Sbjct: 154 LNISRNNIRAEGARYVSEMKLLTNLNIYLNGIRAEGT-KYISEMKELTCLNIMSNAIHDK 212
Query: 437 GLRHLKPLKNLRSLTLESCKVT---ANDIKRLQS 467
G HL+ + L +L + S ++ A I +QS
Sbjct: 213 GAEHLRQMPKLNTLNINSNSISVEGAKFISEIQS 246
>gi|290974572|ref|XP_002670019.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083573|gb|EFC37275.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 334
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 2/205 (0%)
Query: 247 KF-SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
KF S + L SL + GIGDEG+ ++ L L L +S+ ++G G++ +S L L S+
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
++S I ++ ++ + L SLN++ +I D G+ ++ L LT L++ I D G
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ K L SL I G+ D GVK I +L LT LN+S N + + + IS + L S
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNN-RIGAEGAKSISEMKQLTS 307
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSL 450
L+++ ++I G++ + +K L SL
Sbjct: 308 LSINYNQIGDEGVKSISDMKQLTSL 332
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D +K +S L L SL +S +++ D G+ + L++LT L++ + A + S+S
Sbjct: 145 NGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSIS 204
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ L LN+N ++ D+G + S L L SLN+ + GIGDEG+ ++ + L L +S+
Sbjct: 205 EMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISN 264
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+G G++ +S L L S+N+S I + ++ + L SL+++ QI D G+ +++
Sbjct: 265 NGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYNQIGDEGVKSIS 324
Query: 346 SLTGLTHLD 354
+ LT L+
Sbjct: 325 DMKQLTSLN 333
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 3/207 (1%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L +SD +G G++ +S L L S+N+S I D ++ ++ L L SL++
Sbjct: 131 ISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDI 190
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I G+ +++ + LT L++ RI D G + K L SL I G+ D GVK
Sbjct: 191 SLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKL 250
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I ++ LT LN+S N + D+ ++ IS L L SLN+SN+RI + G + + +K L SL+
Sbjct: 251 ISEMKQLTSLNISNNG-IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFRP 478
+ ++ +K + D+ L S
Sbjct: 310 INYNQIGDEGVKSI--SDMKQLTSLNK 334
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 108/204 (52%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
++ +++LT L + + + +S L L LN++ ++ D+G + S L L SL+
Sbjct: 130 FISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLD 189
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ IG EG+ +++ + L L ++ ++G G++ +S L L S+N+S GI D ++
Sbjct: 190 ISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVK 249
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ + L SLN+ I D G+ +++ L LT L++ RI GA + K L SL
Sbjct: 250 LISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLS 309
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLN 402
I + D GVK I D+ LT LN
Sbjct: 310 INYNQIGDEGVKSISDMKQLTSLN 333
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 107/204 (52%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS + + D G+ + L++LT LN+ + + +S L L L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+++ + +G + S + L SLN++ IGDEG+ ++ L L L +S+ +G G+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGV 248
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L S+N+S GI D ++ ++ L L SLN+ +I G +++ + LT L
Sbjct: 249 KLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSL 308
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
+ +I D G + + K L SL
Sbjct: 309 SINYNQIGDEGVKSISDMKQLTSL 332
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 1/188 (0%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+ D+G + S L L SLN+ + IGDEG+ ++ L L L++S +G+ G++ +S +
Sbjct: 147 IGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISLNDIGAEGVKSISEM 206
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
L S+N+++ I D ++ ++ L L SLN+ I D G+ ++ + LT L++
Sbjct: 207 KQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNGIGDEGVKLISEMKQLTSLNISNNG 266
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I D G + K L SL I + G K I ++ LT L+++ N + D+ ++ IS
Sbjct: 267 IGDEGVKSISELKQLTSLNISNNRIGAEGAKSISEMKQLTSLSINYN-QIGDEGVKSISD 325
Query: 420 LTGLVSLN 427
+ L SLN
Sbjct: 326 MKQLTSLN 333
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L S+ +S GI D ++ ++ L L SLN+ +I D G+ ++ L LT L
Sbjct: 129 KFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNNRIGDEGVKLISELKQLTSL 188
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ I G + K L SL I + D GVK I +L LT LN+S N + D+
Sbjct: 189 DISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNISNNG-IGDEG 247
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++LIS + L SLN+SN+ I G++ + LK L SL + + ++ A K +
Sbjct: 248 VKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAKSI 299
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ + +I S+ L S+++S + + D G+ + + L SLD +
Sbjct: 146 GIGDEGVKLI-SELKQLTSLNMSNNRIGDEGVKLISELKQLTSLDISL------------ 192
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I A+G+K+ + + L L++ G+ + L +L SLNI
Sbjct: 193 --------------NDIGAEGVKSISEMKQLTSLNINYNRIGDEGVKLISELKQLTSLNI 238
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I D +K +S + L SL IS + + D G+ + L++LT LN+ + A
Sbjct: 239 S-NNGIGDEGVKLISEMKQLTSLNISNNGIGDEGVKSISELKQLTSLNISNNRIGAEGAK 297
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
S+S + L L++N Q+ D+G + S + L SLN
Sbjct: 298 SISEMKQLTSLSINYNQIGDEGVKSISDMKQLTSLN 333
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
LFG+ A ++ K L SL I G+ D GVK I +L LT LN+S N + D+ +
Sbjct: 121 LFGSI---EKAKFISEMKQLTSLIISDNGIGDEGVKLISELKQLTSLNMSNN-RIGDEGV 176
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+LIS L L SL++S + I + G++ + +K L SL + ++ +K
Sbjct: 177 KLISELKQLTSLDISLNDIGAEGVKSISEMKQLTSLNINYNRIGDEGVK 225
>gi|326487896|dbj|BAJ89787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 229/477 (48%), Gaps = 54/477 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKL------------------------TLLNLEGCPVTAACLDSLSALGS----LFYLNL 235
QKL T+L L+G V+++ LSA+G L + L
Sbjct: 286 QKLNAADSLHEIGQNFLSKLVTLKATLTVLRLDGFEVSSS---LLSAIGEGCTNLVEIGL 342
Query: 236 NRCQ-LSDDGCEKF-SRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLEL-SDTQVGS 290
++C ++D+G +R + L ++L C + ++ L ++ C L+CL L S + +
Sbjct: 343 SKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDSIADNCKMLECLRLESCSSINE 402
Query: 291 SGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 348
GL + S NL+ I+L+ G++D +L LA S L L L + I+D GL ++S
Sbjct: 403 KGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFISSKC 462
Query: 349 G-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 404
G L LDL+ + ITD G A L N K ++ L +C +TD+G+ H+ L LT L L
Sbjct: 463 GKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEELTNLELR 522
Query: 405 QNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G LV L++ + +GL L NLR LT+ C+VT
Sbjct: 523 CLVRITGIGISSVVIGCKSLVELDLKRCYSVNDSGLWALARYALNLRQLTISYCQVT 579
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 127/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALA-----------------------NGCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ + + GC
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV----------VIGCK------ 540
Query: 222 DSLSALGSLFYLNLNRC-QLSDDGCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
SL L+L RC ++D G +R NL L + C + GL +L L +L+
Sbjct: 541 -------SLVELDLKRCYSVNDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 591
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ + G L+KL L LKS+
Sbjct: 592 CLQ--DVK-----MVHLSWVS-IEGFEMALRA-ACGRLKKLKILGGLKSV 632
>gi|290987030|ref|XP_002676226.1| predicted protein [Naegleria gruberi]
gi|284089827|gb|EFC43482.1| predicted protein [Naegleria gruberi]
Length = 298
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 147/293 (50%), Gaps = 4/293 (1%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
L S + D GL ++ + NL+ L+ + C + GLE + + LT L R + I +
Sbjct: 7 LEISRIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR-DLKICNE 65
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
G+ + L LD CT + GL +L + +L SL + C + ++ + LT L
Sbjct: 66 GVNWISQSTQLTDLDFTTCT-LDQGLESLCEMKRLTSLWLPSCPKYANK-VELIGQLTQL 123
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + D ++K L +LT L++ + ++S+S L +L LN++ C + D
Sbjct: 124 TSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMSYCNIGD 183
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
DG L+ L L + I D G+++++ L +L L++S+ ++ +G +SGL NL
Sbjct: 184 DGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGAESISGLRNL 243
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+N+ + I D + LS L+SL+ D I+ G+ ++ +L LT L L
Sbjct: 244 TYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSLSL 296
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 8/300 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGC-PVTAACLDSLSALGSLFYLNLN 236
L NL L+IS ++ D G+ Y+ L+ L +LN+ + C T L+S+S + L L +
Sbjct: 1 LENLTFLEIS--RIGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKVR 58
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
++ ++G S+ T L L+ +C + D+GL +L + L L L ++ + +
Sbjct: 59 DLKICNEGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYANKVELI 117
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
LT L S+N+ GI+D + L+ L L++ QI + +++ LT L L++
Sbjct: 118 GQLTQLTSLNICARGINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILNMS 177
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I D GA + LR L++ +TDAGV I L L L++S N ++ E
Sbjct: 178 YCNIGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNN-EISKTGAES 236
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
ISGL L LN+ + I G + L LRSL + +++ IK + R+L L S
Sbjct: 237 ISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSI--RNLRKLTSL 294
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 152/331 (45%), Gaps = 38/331 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERC-TRIHGGLVNLKGLMKLESLNI 162
L NLT L R I G+K + L NL L++ + C T GL ++ + KL L +
Sbjct: 1 LENLTFLEISR---IGDMGLKYISELKNLRILNIHDPCFTFTRYGLESISEMPKLTCLKV 57
Query: 163 ---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
K CN + +S T L L + + D G+ L +++LT L L CP A
Sbjct: 58 RDLKICN----EGVNWISQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYA- 111
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
N+ +L +LT L SLN+ + GI D+ V++ L L
Sbjct: 112 ----------------NKVEL-------IGQLTQLTSLNICARGINDQDGVHIKELTQLT 148
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L++S Q+ + +S LTNL +N+S+ I D + LS L+ L + ITD
Sbjct: 149 ELDISLNQIVFETIESISQLTNLIILNMSYCNIGDDGACLIGELSQLRELKVLKNLITDA 208
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G+ +++ L L LD+ I+ +GA + +NL L I + D G I DLS L
Sbjct: 209 GVISISQLKHLIKLDISNNEISKTGAESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLR 268
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ + ++ + ++ I L L SL++SN
Sbjct: 269 SLH-ADKTGISSEGIKSIRNLRKLTSLSLSN 298
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 10/244 (4%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
GVN W+ SQ + L +D + + D GL L + L SL C + ++ +E
Sbjct: 65 EGVN--WI----SQSTQLTDLDFTTCTL-DQGLESLCEMKRLTSLWLPSCPKYANK-VEL 116
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ L+ LTSL+ I Q L L +LD+ + + ++ L L LN
Sbjct: 117 IGQLTQLTSLNICAR-GINDQDGVHIKELTQLTELDISLNQIVFETIESISQLTNLIILN 175
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ +CN I D + L+ L+ L++ + +TD+G+ + L+ L L++ ++
Sbjct: 176 MSYCN-IGDDGACLIGELSQLRELKVLKNLITDAGVISISQLKHLIKLDISNNEISKTGA 234
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+S+S L +L YLN+ + D+GC+ L+ L SL+ D GI EG+ ++ L L L
Sbjct: 235 ESISGLRNLTYLNIGYNLIGDEGCDFICDLSLLRSLHADKTGISSEGIKSIRNLRKLTSL 294
Query: 282 ELSD 285
LS+
Sbjct: 295 SLSN 298
>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus]
gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]
Length = 586
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 186/437 (42%), Gaps = 79/437 (18%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
NA+ ++ M L L++ C R+ G+ + G+ L LN+ C +TD+ ++
Sbjct: 71 ENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIR 130
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + L+ L I+ + +T G+ L L+ L L+L G PVT L SL L L YL+
Sbjct: 131 HLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 235 LNRCQLSDDGCE-------------------KFSRLTNLESLNLDSC-------GIG--- 265
L ++S+ G + KF L +LE LN+ +C G+G
Sbjct: 191 LWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDSTLKGLGAKV 250
Query: 266 -----------------DEGLVNLTGLCNL-------------------KCLELSDTQVG 289
D G V + L L + L+LS T +G
Sbjct: 251 PPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEHLDLSSTTIG 310
Query: 290 SSGLRHLSGL-TNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSL 347
S + ++ + NL+ +NLS T +S + LAG +S+L++L+L + D L+ + +
Sbjct: 311 DSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDDVALSYMNMM 370
Query: 348 TGLTHLDL----FGARITDSGAAYLRNF-----KNLRSLEICGGGLTDAGVKHIKDLSSL 398
L +DL I S ++ F +NL LE+ T + ++ LS
Sbjct: 371 PSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDDESLRPLSRF 430
Query: 399 TLLN--LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L+ + ++ + TD L +S L L +L++ ++ +T+ KP+ L+ + L C
Sbjct: 431 RKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATLQKIDLRGCW 490
Query: 457 VTANDIKRLQSRDLPNL 473
+ D + R P +
Sbjct: 491 LLTEDGLSVFHRRFPQI 507
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 184/427 (43%), Gaps = 79/427 (18%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
V+ +WM + S L S+++S ++ SG+ + + L+ L+ + C++++D G+ H
Sbjct: 73 AVDSEWMAYLGS-FRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRCLKVTDAGIRH 131
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L + L L ITA G+ + L LV LDL L +L+ L KL+ L+
Sbjct: 132 LLSIPTLEKLCIAET-GITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLD 190
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
+ W + I++S L L L I+ + VT L L LN+ C +
Sbjct: 191 L-WGSKISNSGSDVLQMFPKLSFLNIAWTSVTK-----FPNLPHLECLNMSNCIIDSTLK 244
Query: 217 -------------TAACLDS------LSALGSLFYLNLNRCQLSDDGCEKF---SRLTNL 254
+ A + A+ +L+YL+ + L +F SR+ +
Sbjct: 245 GLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASL-----HRFCFLSRMKAV 299
Query: 255 ESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGI 312
E L+L S IGD + + + NLK L LS T V SSG+ L+G ++NLE+++LS T +
Sbjct: 300 EHLDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMV 359
Query: 313 SD------------------------------------GSLRKLAGLSSLKSLNLDARQI 336
D SL +L L L+ LNL+ +
Sbjct: 360 DDVALSYMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHV 419
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
D L L+ L+HL L TD+ +YL NL++L I LT+ K ++
Sbjct: 420 DDESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVA 479
Query: 397 SLTLLNL 403
+L ++L
Sbjct: 480 TLQKIDL 486
>gi|46447197|ref|YP_008562.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400838|emb|CAF24287.1| hypothetical protein pc1563 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 380
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 30/244 (12%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E LN +TD+ + L NLK L + C +TD+G+A+L L L LNL GC
Sbjct: 160 EIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGC 219
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+T A L L+ L L YL+L C L+D G + L L+ L+L+ C NL
Sbjct: 220 RKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCP-------NL 272
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNL 331
TG+ GL HL L L+ +NLS+ ++D L L L +L LNL
Sbjct: 273 TGV----------------GLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNL 316
Query: 332 DA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
++TD GL L L L HLDL + +TD G A+L+ L+ L + LTDAG
Sbjct: 317 AGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDAG 376
Query: 389 VKHI 392
+ HI
Sbjct: 377 LAHI 380
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 5/209 (2%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ +T G+
Sbjct: 172 LTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLAHLT 231
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L+ L L L C + GL +L L+ L+ L++ C +T + L L L+ L +
Sbjct: 232 PLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQHLNL 291
Query: 188 S-CSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
S C K+TD+G+A+LK L L LNL GC +T A L L L +L +L+L C L+D G
Sbjct: 292 SWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLTDVG 351
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNL 272
L L+ LNL C + D GL ++
Sbjct: 352 LAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 114/221 (51%), Gaps = 12/221 (5%)
Query: 247 KFSRLTN-----LESLNL-DSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL 299
KF ++ N +E LN + + D L+ L NLK L L D + +GL HL+ L
Sbjct: 149 KFEKILNHFSNEIEGLNFSEKYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASL 208
Query: 300 TNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFG 357
L+ +NL+ ++D L L L L+ L+L +TD GLA LT L L HLDL G
Sbjct: 209 VALQHLNLAGCRKLTDAGLAHLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNG 268
Query: 358 -ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+T G A+L+ L+ L + LTDAG+ H+K L +L LNL+ LTD L
Sbjct: 269 CPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLV 328
Query: 416 LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
+ L L L+++ S +T GL HLKPL L+ L L C
Sbjct: 329 HLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWC 369
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 7/212 (3%)
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSD-TQVGSSGLR 294
+ L+D NL+ L+L C + D GL +L L L+ L L+ ++ +GL
Sbjct: 169 KYSLTDTHLLALKNCKNLKELHLQDCYMLTDAGLAHLASLVALQHLNLAGCRKLTDAGLA 228
Query: 295 HLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 352
HL+ L L+ ++L+ ++D L L L +L+ L+L+ +T GLA L L L H
Sbjct: 229 HLTPLVVLQYLSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLKPLVALQH 288
Query: 353 LDL-FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L + ++TD+G A+L+ L L + G LTDAG+ H+ L +L L+L+ NLT
Sbjct: 289 LNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPLVTLQHLDLTACSNLT 348
Query: 411 DKTLELISGLTGLVSLNVSN-SRITSAGLRHL 441
D L + L L LN+ +T AGL H+
Sbjct: 349 DVGLAHLKPLVALQHLNLGWCPNLTDAGLAHI 380
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 28/157 (17%)
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L+G D +TD+GL HL LQ LD N C ++ GL HL+
Sbjct: 239 LSLAGCDNLTDAGLAHLTPLVALQHLDLNGCPNLTGVGLAHLK----------------- 281
Query: 121 AQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
L+ L L+L C ++ GL +LK L+ L LN+ C+ +TD+ + L L
Sbjct: 282 --------PLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGCDKLTDAGLVHLMPL 333
Query: 180 TNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ L + +CS +TD G+A+LK L L LNL CP
Sbjct: 334 VTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCP 370
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+L +DL+G ++T GL HLK LQ L+ ++C +++D GL HL+ L L L+
Sbjct: 260 ALQHLDLNGCPNLTGVGLAHLKPLVALQHLNLSWCDKLTDAGLAHLKPLVALHYLNLAGC 319
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDS 171
+ +T G+ L+ L LDL C+ + GL +LK L+ L+ LN+ WC +TD+
Sbjct: 320 DKLTDAGLVHLMPLVTLQHLDLTACSNLTDVGLAHLKPLVALQHLNLGWCPNLTDA 375
>gi|326505700|dbj|BAJ95521.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 229/477 (48%), Gaps = 54/477 (11%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + ++ + + L +VDLS D L S L+ L+ C
Sbjct: 106 VRQVCLARASGVGWRGLEALVAACPRLEAVDLSHCVGAGDREAAALAAASGLRELNLEKC 165
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGLV 149
+ ++D GL + G L +LSF+ I+ G+ +L LD+ + L
Sbjct: 166 LGVTDMGLAKVAVGCPRLETLSFKWCREISDIGVDLLVKKCRDLRSLDISYLKVSNESLR 225
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGL 203
++ L KLE L + C+CI D ++ LS G +L+S+ +S C+ VT G+A L L
Sbjct: 226 SISTLEKLEELAMVACSCIDDEGLELLSRGSNSLQSVDVSRCNHVTSQGLASLIDGHSFL 285
Query: 204 QKL------------------------TLLNLEGCPVTAACLDSLSALGS----LFYLNL 235
QKL T+L L+G V+++ LSA+G L + L
Sbjct: 286 QKLNAADSLHEIGQNFLSKLVTLKATLTVLRLDGFEVSSS---LLSAIGEGCTNLVEIGL 342
Query: 236 NRCQ-LSDDGCEKF-SRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLEL-SDTQVGS 290
++C ++D+G +R + L ++L C + ++ L ++ C L+CL L S + +
Sbjct: 343 SKCNGVTDEGISSLVARCSYLRKIDLTCCNLVTNDSLDSIADNCKMLECLRLESCSSINE 402
Query: 291 SGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 348
GL + S NL+ I+L+ G++D +L LA S L L L + I+D GL ++S
Sbjct: 403 KGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFISSKC 462
Query: 349 G-LTHLDLFG-ARITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 404
G L LDL+ + ITD G A L N K ++ L +C +TD+G+ H+ L LT L L
Sbjct: 463 GKLIELDLYRCSSITDDGLAALANGCKKIKLLNLCYCNKITDSGLSHLGALEELTNLELR 522
Query: 405 QNCNLTDKTLE-LISGLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G LV L++ + +GL L NLR LT+ C+VT
Sbjct: 523 CLVRITGIGISSVVIGCKSLVELDLKRCYSVDDSGLWALARYALNLRQLTISYCQVT 579
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ IAS +L +DL+ V D L HL CS L L ISD GL +
Sbjct: 400 INEKGLERIASCCPNLKEIDLTDCGVNDEALHHLAKCSELLILKLGLSSSISDKGLGFIS 459
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R ++IT G+ A A G K++ LN+
Sbjct: 460 SKCGKLIELDLYRCSSITDDGLAALAN-----------------------GCKKIKLLNL 496
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ + + GC
Sbjct: 497 CYCNKITDSGLSHLGALEELTNLELRCLVRITGIGISSV----------VIGCK------ 540
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
SL L+L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 541 -------SLVELDLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 591
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ G L+KL L LKS+
Sbjct: 592 CLQ--DVK-----MVHLSWVS-IEGFEMALRAAC-GRLKKLKILGGLKSV 632
>gi|421897032|ref|ZP_16327415.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
gi|206588197|emb|CAQ18765.1| type III effector gala6 protein [Ralstonia solanacearum MolK2]
Length = 625
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 142/479 (29%), Positives = 206/479 (43%), Gaps = 59/479 (12%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVN------DKWMDVIASQ 55
PR +++ EL SR + V+ RD A+ LG+YP + + ++ + +
Sbjct: 103 PRRAMREVNRELRNASRAV--VTHLTIRDPAMF-AHLGKYPALTSVRFKGELTLEALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ +D+S G V+++GL HL L+SL N I+I G L ++LTSLS
Sbjct: 160 PPGVEHLDISRCTGRGVSNAGLAHLA-TRPLKSLSLN-GIEIDAEGARLLATCASLTSLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKW 164
+I + A A ++ LDL VN+ G L SLN+
Sbjct: 218 LT-GCSIGDRAATALAQSRSIASLDLS---------VNMIGPDGARALASAPLLSLNLH- 266
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D L+ LKSL S + + D+G+ LT LNL G + A +L
Sbjct: 267 NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARAL 326
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
SL L+L+ +L D G + + +L SLNL IGD+G L LK L LS
Sbjct: 327 RRNTSLTELDLSTNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLS 386
Query: 285 DTQVGSSGLRHLSGLTNLE------------------------SINLSFTGISDGSLRKL 320
+G G L G T L S++L I D R L
Sbjct: 387 YNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARAL 446
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
A +L L+L I D G AL LT L+L+G + D GAA L L SL +
Sbjct: 447 ATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLG 506
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ G +H+ ++LT L+LS+N + + E +S T L +LNVS + I G R
Sbjct: 507 RNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGAEALSLSTVLTTLNVSGNAIGEKGAR 564
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 162/390 (41%), Gaps = 25/390 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 211 ASLTSLSLTGCSIGDRAATALAQSRSIASLDLSVNMIGPDGARALASAPLLSLNLHNNGI 270
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 271 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNTVLTQLNLAGNMIGPAGARALRRNT 330
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+G +L SL + +++ D G L L LNL P
Sbjct: 331 SLTELDLS-TNRLGDAGAQVLAGSRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNP 389
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L +L L+L C + G +R T+L SL+L S IGD+G L
Sbjct: 390 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGDDGARALATS 449
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+LS + +G + L+G +L S+NL + D LA L SLNL +
Sbjct: 450 RTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAQHPRLTSLNLGRNR 509
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I G L LT LDL RI GA L L +L + G + + G + +
Sbjct: 510 IGPNGAQHLAKSATLTELDLSENRIGPEGAEALSLSTVLTTLNVSGNAIGEKGARAFAEK 569
Query: 396 S-SLTLLNLSQN--CNLTDKTLELISGLTG 422
S SLT L+ N K LE + LTG
Sbjct: 570 STSLTSLDARNNRRGEAGAKMLEANTRLTG 599
>gi|209154948|gb|ACI33706.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 400
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 59/377 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G + +T + EG +NL L
Sbjct: 181 ----------------------HVSDVGIGHLAGMTRSAA----------EGCLNLEYLT 208
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GL L +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 209 LQDCQKLTDLS-----LKHISKGLAKLRVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSC 263
Query: 334 RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV- 389
I+DTG+ L T L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 264 DNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L
Sbjct: 324 RMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 383
Query: 448 RSLTLESCKVTANDIKR 464
+ L L ++T ++ R
Sbjct: 384 KVLNLGLWQMTESEKVR 400
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 43/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G +NL L L+ C ++ L ++ KGL KL
Sbjct: 190 LAGMTR-----------------SAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLAKLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDMSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEG--- 268
SL+ + Y L+L C +SDDG + R + L +LN+ C I D+G
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 269 ----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L LTG+ C T++ GL ++ L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G R L N
Sbjct: 89 MPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQYLKN 144
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHL 353
LE + L + I++ L +A GL LKSLNL + R ++D G+ L +T G +L
Sbjct: 145 LEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNL 204
Query: 354 DLFG----ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ ++TD ++ + LR +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 205 EYLTLQDCQKLTDLSLKHISKGLAKLRVLNLSFCGG-ISDAGMIHLSHMTSLWSLNLRSC 263
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D + L G L L++S +I L ++ + L L+SL+L SC ++ + I
Sbjct: 264 DNISDTGIMHLAMGTLRLSGLDMSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 464 RL 465
R+
Sbjct: 324 RM 325
>gi|432942786|ref|XP_004083072.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 400
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 184/378 (48%), Gaps = 61/378 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G + +T + EG +NL L
Sbjct: 181 ----------------------HVSDVGIGHLAGMTRSAA----------EGCLNLEYLT 208
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GLT L +NLSF G ISD + L+ + SL SLNL +
Sbjct: 209 LQDCQKLTDLS-----LKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSC 263
Query: 334 RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
I+DTG A+ SL L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 264 DNISDTGTMHLAMGSLR-LSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGI 322
Query: 390 -KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKN 446
+ ++ + L LN+ Q +TDK LELI+ LT LV +++ ++IT GL + L
Sbjct: 323 NRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPC 382
Query: 447 LRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 383 LKVLNLGLWQMTESEKVR 400
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 46/321 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
N++SL+ + C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 91 NIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEMLEL 150
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + L+G+T NL+ L +
Sbjct: 151 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNLEYLTLQ 210
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDG 244
C K+TD + ++ KGL KL +LNL C ++ A + LS +GSL+ LNL C +SD G
Sbjct: 211 DCQKLTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTG 270
Query: 245 CEKFSRLT-NLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+ + L L++ C IGD+ L + GL L
Sbjct: 271 TMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA-----------------------QGLYQL 307
Query: 303 ESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 358
+S++L ISD + R + + L++LN+ +ITD GL + LT L +DL+G
Sbjct: 308 KSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGIDLYGCT 367
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 368 KITKRGLERITQLPCLKVLNL 388
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL + +L SL+ R + I+ G
Sbjct: 215 LTDLSLKHISKGLTKLRVLNLSFCGGISDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRT 334
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + L +L ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIADHLTQLVGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
+
Sbjct: 395 E 395
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G R L N
Sbjct: 89 MPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCKQITDSSLG----RIAQYLKN 144
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE + L + I++ L +A GL LKSLNL + R ++D G+ L +T L
Sbjct: 145 LEMLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLNL 204
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+L L ++TD ++ + LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 205 EYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGG-ISDAGMIHLSHMGSLWSLNLRSC 263
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D T+ L G L L+VS +I L ++ + L L+SL+L SC ++ + I
Sbjct: 264 DNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 464 RL 465
R+
Sbjct: 324 RM 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 16/207 (7%)
Query: 69 VTDSGLIHL--------KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
V+D G+ HL + C NL+ L C +++D L+H+ +GL+ L L+ I
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLNLEYLTLQDCQKLTDLSLKHISKGLTKLRVLNLSFCGGI 241
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ GM + + +L L+L C I G + G ++L L++ +C+ I D + ++
Sbjct: 242 SDAGMIHLSHMGSLWSLNLRSCDNISDTGTMHLAMGSLRLSGLDVSFCDKIGDQTLAYIA 301
Query: 178 -GLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
GL LKSL + ++D GI ++ + +L LN+ C +T L+ ++ L L +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLVGI 361
Query: 234 NLNRC-QLSDDGCEKFSRLTNLESLNL 259
+L C +++ G E+ ++L L+ LNL
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNL 388
>gi|320165725|gb|EFW42624.1| hypothetical protein CAOG_07756 [Capsaspora owczarzaki ATCC 30864]
Length = 880
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 163/379 (43%), Gaps = 8/379 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-L 151
QI+ L GLS LT L + NN IT+ F+GL L L L T I L N
Sbjct: 310 QITTIPSSALTGLSALTQL-YLYNNQITSVPANGFSGLTALTDLRLSNNT-ITSILANAF 367
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL KL L++ N +T SGLT L L + + ++ + GL L L L
Sbjct: 368 TGLTKLTYLDLS-LNQLTSIPAGAFSGLTALTQLLLFNNWLSAVPSSAFTGLTALIYLYL 426
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+T ++ + L +L L L Q++ F+ L+ L L L S I +
Sbjct: 427 NNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGLSALVQLYLYSNRITAIFVNA 486
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
TGL +L LELS+ Q+ S +GLT + ++L +S GL++L++L L
Sbjct: 487 FTGLTHLSLLELSNNQITSLPANAFAGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALYL 546
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
QIT A T LT L L L+ +IT A+ L L + +T
Sbjct: 547 YNNQITTVAANAFTGLTALVQLHLYRNQITTIPASAFAGLSALVQLYLNSNRITTIFANA 606
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN---SRITSAGLRHLKPLKNLR 448
L+ LT L++S N +T +GLT + L++ N S + S+ L L+ L
Sbjct: 607 FPSLTKLTYLDISNN-QITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 449 SLTLESCKVTANDIKRLQS 467
+ V AN L +
Sbjct: 666 LFNNQISSVAANAFTSLTA 684
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 197/471 (41%), Gaps = 50/471 (10%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQG----SSLLSVDLSGSDVTD--------- 71
L A A L Y +N+ + +A+ ++L+ + L G+ +T
Sbjct: 407 LSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGL 466
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L+ L SN +I+ + GL++L+ L NN IT+ AFAGL
Sbjct: 467 SALVQLYLYSN----------RITAIFVNAFTGLTHLSLLELS-NNQITSLPANAFAGLT 515
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+ +L L + GL L++L + + N IT +GLT L L + ++
Sbjct: 516 AMTQLSLYNNSLSAVPSSAFTGLTALQALYL-YNNQITTVAANAFTGLTALVQLHLYRNQ 574
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+T + GL L L L +T ++ +L L YL+++ Q++ F+ L
Sbjct: 575 ITTIPASAFAGLSALVQLYLNSNRITTIFANAFPSLTKLTYLDISNNQITSLPANAFTGL 634
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---- 307
T + L+L + TGL L+ L L + Q+ S + LT L + L
Sbjct: 635 TAMTQLHLYNNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFTSLTALIQLQLYGNL 694
Query: 308 -------SFTGISDGSLRKL-------------AGLSSLKSLNLDARQITDTGLAALTSL 347
+F+G+S +L +L GL++L L LD QIT A + L
Sbjct: 695 ITTIPAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGL 754
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
T L +L L+G +IT A+ L++L + +T L++L L+LS +
Sbjct: 755 TALIYLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAANAFAGLTALNWLDLS-DS 813
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+T + S L L LN+ N+ +++ L L LT+ ++T
Sbjct: 814 QITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQLTMYGNRIT 864
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 187/447 (41%), Gaps = 40/447 (8%)
Query: 44 VNDKWMDVIASQG----SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
+N+ W+ I S ++L+ + L+ + +T + LQ L + QI+ +
Sbjct: 114 LNNNWLSAIPSSAFTGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLH-NNQIATVAI 172
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKL 157
GL+ L +L + NN I AF+GL + +++LD + T + GL KL
Sbjct: 173 NAFSGLTALQTL-YLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANA--FSGLSKL 229
Query: 158 ESL--NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L N W + I S +GLT L L++ +++T GL L L L
Sbjct: 230 NTLQLNNNWLSAIPSSAF---TGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQ 286
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T ++ S +L L L Q++ + L+ L L L + I +GL
Sbjct: 287 ITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGL 346
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL------------ 320
L L LS+ + S +GLT L ++LS T I G+ L
Sbjct: 347 TALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLFNNW 406
Query: 321 ---------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
GL++L L L+ QIT A T LT L L L+G +IT A+
Sbjct: 407 LSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQLQLYGNQITTIPASAFAGL 466
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L L + +T V L+ L+LL LS N +T +GLT + L++ N+
Sbjct: 467 SALVQLYLYSNRITAIFVNAFTGLTHLSLLELSNN-QITSLPANAFAGLTAMTQLSLYNN 525
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+++ L L++L L + ++T
Sbjct: 526 SLSAVPSSAFTGLTALQALYLYNNQIT 552
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 153/368 (41%), Gaps = 7/368 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GLS L +L NN ++A AF GL L++L L + T +
Sbjct: 94 QITTVPANAFSGLSTLNTLQLN-NNWLSAIPSSAFTGLTALIQLLLNNNQITTVPSSA-- 150
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + N I + SGLT L++L + +++ GL L +L
Sbjct: 151 FTGLTALQILYLH-NNQIATVAINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQVLR 209
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L+ +T ++ S L L L LN LS F+ LT L L LD+ I
Sbjct: 210 LDTNQITTVPANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVPAN 269
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+GL L L L + Q+ + SG T L + L I+ L GLS+L L
Sbjct: 270 AFSGLTALIYLYLYNNQITTVATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLY 329
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L QIT + LT LT L L IT A L L++ LT
Sbjct: 330 LYNNQITSVPANGFSGLTALTDLRLSNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 389
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L++LT L L N L+ +GLT L+ L ++N++IT+ L L L
Sbjct: 390 AFSGLTALTQLLLFNNW-LSAVPSSAFTGLTALIYLYLNNNQITTVAANAFTGLTALVQL 448
Query: 451 TLESCKVT 458
L ++T
Sbjct: 449 QLYGNQIT 456
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 149/336 (44%), Gaps = 10/336 (2%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESL- 160
G+ T+ + ++N IT+ AF GL L ++LD + T + GL L +L
Sbjct: 56 GIPATTTTLYLQSNQITSISSSAFTGLTALTYMRLDTNQITTVPANA--FSGLSTLNTLQ 113
Query: 161 -NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N W + I S +GLT L L ++ +++T + GL L +L L +
Sbjct: 114 LNNNWLSAIPSSAF---TGLTALIQLLLNNNQITTVPSSAFTGLTALQILYLHNNQIATV 170
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+++ S L +L L L Q+ FS L L+ L LD+ I +GL L
Sbjct: 171 AINAFSGLTALQTLYLYNNQIITVATNAFSGLAALQVLRLDTNQITTVPANAFSGLSKLN 230
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+L++ + + +GLT L + L I+ +GL++L L L QIT
Sbjct: 231 TLQLNNNWLSAIPSSAFTGLTALIQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTV 290
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
A + T L L L+G +IT ++ L L L + +T L++LT
Sbjct: 291 ATNAFSGPTALVQLQLYGNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALT 350
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L LS N +T +GLT L L++S +++TS
Sbjct: 351 DLRLSNNT-ITSILANAFTGLTKLTYLDLSLNQLTS 385
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 132/332 (39%), Gaps = 30/332 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
QI+ GL+ L L RN IT AFAGL LV+L L R T I
Sbjct: 550 QITTVAANAFTGLTALVQLHLYRNQ-ITTIPASAFAGLSALVQLYLNSNRITTIFANA-- 606
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLT 207
L KL L+I N IT +GLT + L + S V S L LQ L
Sbjct: 607 FPSLTKLTYLDIS-NNQITSLPANAFTGLTAMTQLHLYNNLFSTVPSSAFTGLTALQALF 665
Query: 208 LLNLEGCPVTAACLDSLSALGSL-FYLNL---------------NRCQLSDDG-----CE 246
L N + V A SL+AL L Y NL N QL ++
Sbjct: 666 LFNNQISSVAANAFTSLTALIQLQLYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIPSS 725
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
F+ LT L L LD+ I +GL L L L Q+ + +GLT L+++
Sbjct: 726 AFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQALY 785
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L+ I+ + AGL++L L+L QIT +SL L L+L+ ++ +
Sbjct: 786 LNDNTITTIAANAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTS 845
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L L + G +T L++L
Sbjct: 846 AFTGLTALTQLTMYGNRITTISANAFTGLNAL 877
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 112/264 (42%), Gaps = 8/264 (3%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIHGGLV 149
QI+ GL+ +T L NN + AF GL L L L + +
Sbjct: 622 QITSLPANAFTGLTAMTQLHLY-NNLFSTVPSSAFTGLTALQALFLFNNQISSVAANAFT 680
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L L++L+ + N IT SGL+ L LQ+ + ++ + GL LT L
Sbjct: 681 SLTALIQLQ----LYGNLITTIPAGAFSGLSKLNLLQLYNNWLSAIPSSAFTGLTALTQL 736
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
L+ +T ++ S L +L YL+L Q++ F+ LT L++L L+ I
Sbjct: 737 RLDTNQITTVPANAFSGLTALIYLSLYGNQITTISASAFAGLTALQALYLNDNTITTIAA 796
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
GL L L+LSD+Q+ S S L L +NL +S GL++L L
Sbjct: 797 NAFAGLTALNWLDLSDSQITSIPANVFSSLPALAQLNLYNNWLSAVPTSAFTGLTALTQL 856
Query: 330 NLDARQITDTGLAALTSLTGLTHL 353
+ +IT A T L L L
Sbjct: 857 TMYGNRITTISANAFTGLNALVQL 880
>gi|215769345|dbj|BAH01574.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 187/392 (47%), Gaps = 24/392 (6%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD + C +ISD G++H+ + +L L + +T G+ A + LINL LDL
Sbjct: 4 LKELDLSRCSKISDAGIKHIASIESLEKLHVSQT-GLTDNGVMAISSLINLRLLDLGGVR 62
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
L +L+ L +LE L+I W + IT+ L T+L L IS ++VT L
Sbjct: 63 FTDKALRSLQVLTQLEHLDI-WGSEITNEGASVLIAFTSLSFLNISWTRVT-----CLPI 116
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL--TNLESLNLD 260
L L LN+ C + + C L L L ++ + E FS + ++L L++
Sbjct: 117 LPTLRCLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNID-EVFSSILPSSLTYLDMS 175
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRK 319
SC L L + NL+ L+LS +++ S + +++ + NL+ ++LS + ++ +L
Sbjct: 176 SCS--SSNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCV 233
Query: 320 LAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF-----GARITDS----GAAYLR 369
LAG + SL +L+L +I D+ L ++ + L L+L G + +S + L
Sbjct: 234 LAGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALE 293
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K L SL + L D + + L +L L L + L+D L +S + L+ L
Sbjct: 294 ELKYLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDF-LSDPALHALSSASNLIHLGFC 352
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ +++ GLR P LR L L C + D
Sbjct: 353 GNILSTTGLRKFVPPATLRMLDLSGCWILTGD 384
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 150/341 (43%), Gaps = 31/341 (9%)
Query: 28 FRDCALQDL-CLGQYPGVNDKWMDVIASQGSSLL--SVDLSGSDVTDSGLIHLKDCSNLQ 84
F D AL+ L L Q + D W I ++G+S+L LS +++ + + L L+
Sbjct: 63 FTDKALRSLQVLTQLEHL-DIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILPTLR 121
Query: 85 SLDFNFCI--QISDGGLEHLRGLSNL--TSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
L+ + C I +G + L L L ++ SF + + + + + +L LD+
Sbjct: 122 CLNMSNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPS-----SLTYLDMSS 176
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C+ L L + LE L++ + I+D+ + NLK L +S S+VT + L
Sbjct: 177 CSS--SNLYFLGNMRNLEHLDLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVL 234
Query: 201 KG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
G + LT L+L + + L +S + SL LNL+R + E ++ +L +L
Sbjct: 235 AGTVPSLTTLSLAHTKIDDSALLYISMMPSLRILNLSRTCIKGFMMENSVKVLSLSALE- 293
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
L L+ L L++TQ+ + L+ L L+ + L +SD +L
Sbjct: 294 --------------ELKYLESLNLNNTQLMDDVIPPLASLRALKYLFLKSDFLSDPALHA 339
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L+ S+L L ++ TGL L LDL G I
Sbjct: 340 LSSASNLIHLGFCGNILSTTGLRKFVPPATLRMLDLSGCWI 380
>gi|254416421|ref|ZP_05030174.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176859|gb|EDX71870.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 477
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 210/408 (51%), Gaps = 52/408 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGL 130
G +KD S L L + + + + + LS LTSL+ + NN IT +
Sbjct: 84 GYNQIKDVSPLSGLTNLTVLNLWNNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTN 143
Query: 131 INLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITD--------------SDMK 174
+ ++ L+ + T I GL +L GL+ L IK + ++ +D+
Sbjct: 144 LTVLNLNNNQITDISPLSGLTSLTGLI-LGGNQIKDVSPLSGLTNLTVLNLNNNQITDIS 202
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLSGLT+L L + +++TD I+ L GL LT+L L +T + LS L +L L
Sbjct: 203 PLSGLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALY 258
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
LN Q++D S LTNL++L L++ I D + L+GL NL L L++ Q+ + +
Sbjct: 259 LNNNQITD--ISPLSGLTNLDALYLNNNQITD--ISPLSGLTNLDALYLNNNQI--TDIS 312
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+++ L+ I+D SL L+GL++L +L L++ QITD ++ L LT L +L
Sbjct: 313 PLSGLTNLDALYLNSNQITDISL--LSGLTNLDALYLNSNQITD--ISPLLELTNLNYLI 368
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNL 409
L +ITD + L NL L + +TD I LS LT +LN +Q +
Sbjct: 369 LDNNQITD--ISPLSGLTNLTILILDNNQITD-----ISPLSGLTNLGGLILNSNQ---I 418
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
TD + +SGLT L LN+++++IT L L NLR L L+ +
Sbjct: 419 TD--VSPLSGLTNLTVLNLNSNQITDV--SPLSGLTNLRRLHLKDNPI 462
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 193/400 (48%), Gaps = 81/400 (20%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS------ 177
+ +GL NL L+L + + ++ L L SL + N +D+ PLS
Sbjct: 91 VSPLSGLTNLTVLNLW-----NNQITDISSLSGLTSLTELYLNNNQITDISPLSGLTNLT 145
Query: 178 ----------------GLTNLKSLQISCSKVTD--------------------SGIAYLK 201
GLT+L L + +++ D + I+ L
Sbjct: 146 VLNLNNNQITDISPLSGLTSLTGLILGGNQIKDVSPLSGLTNLTVLNLNNNQITDISPLS 205
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
GL LT+L L +T + SLS L SL L L+ Q++D S LTNL++L L++
Sbjct: 206 GLTSLTVLILYSNQITD--ISSLSGLTSLTVLILSDNQITD--ISPLSGLTNLDALYLNN 261
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
I D + L+GL NL L L++ Q+ + + LSGLTNL+++ L+ I+D + L+
Sbjct: 262 NQITD--ISPLSGLTNLDALYLNNNQI--TDISPLSGLTNLDALYLNNNQITD--ISPLS 315
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLD---LFGARITDSGAAYLRNFKNLRSLE 378
GL++L +L L++ QITD L L+GLT+LD L +ITD + L NL L
Sbjct: 316 GLTNLDALYLNSNQITDISL-----LSGLTNLDALYLNSNQITD--ISPLLELTNLNYLI 368
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ +TD + + L++LT+L L N +TD + +SGLT L L +++++IT
Sbjct: 369 LDNNQITD--ISPLSGLTNLTILILDNN-QITD--ISPLSGLTNLGGLILNSNQITDV-- 421
Query: 439 RHLKPLKNLRSLTLESCKVT-------ANDIKRLQSRDLP 471
L L NL L L S ++T +++RL +D P
Sbjct: 422 SPLSGLTNLTVLNLNSNQITDVSPLSGLTNLRRLHLKDNP 461
>gi|300691655|ref|YP_003752650.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299078715|emb|CBJ51374.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum PSI07]
Length = 608
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 203/470 (43%), Gaps = 45/470 (9%)
Query: 3 PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWM------DVIASQ 55
PR + + EL SR + V+ RD A+ LG YP + + D + +
Sbjct: 103 PRRAMRAVSRELRDASRAV--VTHLTIRDPAVLR-HLGNYPALKSLRLKGALTLDALKAL 159
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
L +DLS GS ++ +GL HL L+SL I+I G + L ++L SLS
Sbjct: 160 PPGLEHLDLSRCTGSAMSSAGLAHLA-ARPLKSLCM-IGIEIGVEGAQRLAASTSLASLS 217
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDS 171
I + +A A ++ LDL RI G L G L SLN+ + N I D
Sbjct: 218 LI-GCEIGDRAAEALAASQSIKSLDLS-ANRIGRDGARALAG-APLVSLNL-YSNAIGDE 273
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ L SL +S + + D+G L LT LNL+G + +L+ SL
Sbjct: 274 GARALATSRTLTSLNLSSNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLT 333
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L+L +L D G + +L SL++ IGD+G L LK L LS +
Sbjct: 334 DLDLGNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLR 393
Query: 292 GLRHLSGL------------------------TNLESINLSFTGISDGSLRKLAGLSSLK 327
G+R L G +L S+ L I D R LA S+L
Sbjct: 394 GVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDRGARALAKNSTLT 453
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L I TG AL L LDL G I D GAA L L SL++ G + A
Sbjct: 454 RLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAALARHPRLISLDLRGNRIRSA 513
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
G + + ++L L+LS N + + E +S T L +LNVS++ I AG
Sbjct: 514 GAQQLAKSATLAELDLSAN-RIGAEGAEALSRSTVLTTLNVSDNAIGDAG 562
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 7/287 (2%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--LGSL 230
++ L LKSL++ + D+ A GL+ L L G +++A L L+A L SL
Sbjct: 133 LRHLGNYPALKSLRLKGALTLDALKALPPGLEHLDLSRCTGSAMSSAGLAHLAARPLKSL 192
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+ + ++ +G ++ + T+L SL+L C IGD L ++K L+LS ++G
Sbjct: 193 CMIGI---EIGVEGAQRLAASTSLASLSLIGCEIGDRAAEALAASQSIKSLDLSANRIGR 249
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G R L+G L S+NL I D R LA +L SLNL + I D G AL T L
Sbjct: 250 DGARALAG-APLVSLNLYSNAIGDEGARALATSRTLTSLNLSSNGIDDAGAGALADNTLL 308
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L+L G RI GA L N +L L++ L D G + + SLT L++ N +
Sbjct: 309 TQLNLQGNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRGN-EIG 367
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
DK + ++ L SLN+S + I+ G+R L L L L +C +
Sbjct: 368 DKGAKALARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDI 414
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 168/399 (42%), Gaps = 30/399 (7%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +A+ S+ S+DLS + + G L L SL+ + I D G L
Sbjct: 223 IGDRAAEALAAS-QSIKSLDLSANRIGRDGARALAGAP-LVSLNL-YSNAIGDEGARALA 279
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
LTSL+ +N I G A A L +L+L+ GG L L L++
Sbjct: 280 TSRTLTSLNLS-SNGIDDAGAGALADNTLLTQLNLQGNRIGRGGAQALANSTSLTDLDL- 337
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N + D + L+G +L SL + +++ D G L L LNL ++ + +
Sbjct: 338 GNNRLGDRGARALAGSKSLTSLSVRGNEIGDKGAKALARNATLKSLNLSYNLISLRGVRA 397
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L +L L+L C + G +R +L SL L S IGD
Sbjct: 398 LGGSATLSVLDLCACDIDSSGASALARNASLASLYLGSNRIGDR---------------- 441
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
G R L+ + L + LS GI + LAG SL SL+L +I D G AA
Sbjct: 442 --------GARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAA 493
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L LDL G RI +GA L L L++ + G + + + LT LN+
Sbjct: 494 LARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNV 553
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
S N + D ++ T L+SL+ S I G R L+
Sbjct: 554 SDNA-IGDAGALALAKSTSLISLDARRSGIGEVGARALE 591
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 162/354 (45%), Gaps = 5/354 (1%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G+ L+S++L + + D G L L SL+ + I D G L + LT L+ +
Sbjct: 257 GAPLVSLNLYSNAIGDEGARALATSRTLTSLNLSSN-GIDDAGAGALADNTLLTQLNLQ- 314
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I G +A A +L LDL G L G L SL+++ N I D K
Sbjct: 315 GNRIGRGGAQALANSTSLTDLDLGNNRLGDRGARALAGSKSLTSLSVRG-NEIGDKGAKA 373
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ LKSL +S + ++ G+ L G L++L+L C + ++ +L+ SL L L
Sbjct: 374 LARNATLKSLNLSYNLISLRGVRALGGSATLSVLDLCACDIDSSGASALARNASLASLYL 433
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++ D G ++ + L L L GI G L G +L L+L ++ G
Sbjct: 434 GSNRIGDRGARALAKNSTLTRLALSGNGIHTTGAQALAGNDSLISLDLGGNEIDDDGAAA 493
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ L S++L I ++LA ++L L+L A +I G AL+ T LT L++
Sbjct: 494 LARHPRLISLDLRGNRIRSAGAQQLAKSATLAELDLSANRIGAEGAEALSRSTVLTTLNV 553
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
I D+GA L +L SL+ G+ + G + ++ + LT QN N
Sbjct: 554 SDNAIGDAGALALAKSTSLISLDARRSGIGEVGARALEANTRLT--GTPQNPNF 605
>gi|62632752|ref|NP_001015043.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338219|gb|AAI63001.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
gi|190338703|gb|AAI63002.1| F-box and leucine-rich repeat protein 14b [Danio rerio]
Length = 400
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 59/377 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 180
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G + +T + EG ++L L
Sbjct: 181 ----------------------HVSDVGIGHLAGMTRSAA----------EGCLSLEYLT 208
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GLT L+ +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 209 LQDCQKLTDLS-----LKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSC 263
Query: 334 RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV- 389
I+DTG+ L T L+ LD+ F +I D AY+ + L+SL +C ++D G+
Sbjct: 264 DNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L
Sbjct: 324 RMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 383
Query: 448 RSLTLESCKVTANDIKR 464
+ L L ++T ++ R
Sbjct: 384 KVLNLGLWQMTESEKVR 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 43/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEG--- 268
SL+ + Y L+L C +SDDG + R + L +LN+ C I D+G
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 350
Query: 269 ----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L LTG+ C T++ GL ++ L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 140/301 (46%), Gaps = 72/301 (23%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLCK----------------- 128
Query: 233 LNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLEL-SDTQV 288
Q++D + ++ L NLE L L C I + GL+ + GL LK L L S V
Sbjct: 129 ------QITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 347
G+ HL+G+T ++G L SL+ L L D +++TD L ++
Sbjct: 183 SDVGIGHLAGMTR---------SAAEGCL-------SLEYLTLQDCQKLTDLSLKHISK- 225
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
GLT L + +L CGG ++DAG+ H+ ++SL LNL
Sbjct: 226 -GLTKLKVL-------------------NLSFCGG-ISDAGMIHLSHMTSLWSLNLRSCD 264
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I R
Sbjct: 265 NISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINR 324
Query: 465 L 465
+
Sbjct: 325 M 325
>gi|168701675|ref|ZP_02733952.1| hypothetical protein GobsU_19277 [Gemmata obscuriglobus UQM 2246]
Length = 407
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 9/195 (4%)
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL--------SSLKSLNLD 332
+ LS T+V +GL+ L+ L L +++LS+T ++D ++ LA L L +L+L
Sbjct: 39 VSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLT 98
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++TD G+ AL +L LT LDL +TD G L L +L + G +TDAGVK +
Sbjct: 99 FTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKEL 158
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L LT L+L + +TD + +SGLTGL +L +S + +T AG++ L LKNL L L
Sbjct: 159 AALKGLTALDLG-SMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLEL 217
Query: 453 ESCKVTANDIKRLQS 467
+ VT +K L +
Sbjct: 218 AATGVTDAGVKELAA 232
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT--------NLE 255
+ +T ++L VT L L+AL L L+L+ +++D G + + L L
Sbjct: 34 RPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLT 93
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
+L+L + D G+ L L L L+LS T V GL+ L+ L L ++ L T ++D
Sbjct: 94 TLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDA 153
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+++LA L L +L+L + +TD G L+ LTGLT L + +TD+G L KNL
Sbjct: 154 GVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLT 213
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTL 400
LE+ G+TDAGVK + L SL L
Sbjct: 214 HLELAATGVTDAGVKELAALKSLVL 238
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 20/217 (9%)
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
SLSF R +T G+K A L L LDL ++ +K +
Sbjct: 40 SLSFTR---VTDTGLKELAALKGLTTLDLS--------------YTEVTDAGVKALAALK 82
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
L GLT +L ++ ++VTD+G+ L L+ LT L+L VT L L+ALG+
Sbjct: 83 ALTALGLKGLT---TLDLTFTRVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGA 139
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L L ++D G ++ + L L +L+L S G+ D G L+GL L L +S T V
Sbjct: 140 LNTLGLGGTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVT 199
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+G++ L+ L NL + L+ TG++D +++LA L SL
Sbjct: 200 DAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT--------NLESINLSFTGISDG 315
+ D GL L L L L+LS T+V +G++ L+ L L +++L+FT ++D
Sbjct: 46 VTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTFTRVTDA 105
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
++ LA L +L +L+L +TD GL L +L L L L G +TD+G L K L
Sbjct: 106 GVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLT 165
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+L++ G+TDAG K + L+ LT L +S +TD ++ ++ L L L ++ + +T
Sbjct: 166 ALDLGSMGVTDAGAKELSGLTGLTALGMSFT-GVTDAGVKELAALKNLTHLELAATGVTD 224
Query: 436 AGLRHLKPLKNL 447
AG++ L LK+L
Sbjct: 225 AGVKELAALKSL 236
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 17/210 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRG 104
G + V LS + VTD+GL L L +LD ++ +++D G++ L+G
Sbjct: 33 GRPVTKVSLSFTRVTDTGLKELAALKGLTTLDLSY-TEVTDAGVKALAALKALTALGLKG 91
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L+ L L+F R +T G+KA A L L LDL GL L L L +L +
Sbjct: 92 LTTL-DLTFTR---VTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLG- 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+TD+ +K L+ L L +L + VTD+G L GL LT L + VT A + L
Sbjct: 147 GTSVTDAGVKELAALKGLTALDLGSMGVTDAGAKELSGLTGLTALGMSFTGVTDAGVKEL 206
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
+AL +L +L L ++D G ++ + L +L
Sbjct: 207 AALKNLTHLELAATGVTDAGVKELAALKSL 236
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 59 LLSVDLSGSDVTDSGL--------IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
L ++DLS ++VTD+G+ + L +LD F +++D G++ L L LT+
Sbjct: 60 LTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTLDLTF-TRVTDAGVKALAALKALTT 118
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L + +T +G+K A L L L L + G+ L L L +L++ +TD
Sbjct: 119 LDLS-HTLVTDEGLKELAALGALNTLGLGGTSVTDAGVKELAALKGLTALDLG-SMGVTD 176
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ K LSGLT L +L +S + VTD+G+ L L+ LT L L VT A + L+AL SL
Sbjct: 177 AGAKELSGLTGLTALGMSFTGVTDAGVKELAALKNLTHLELAATGVTDAGVKELAALKSL 236
Query: 231 FYLNLNRCQLSDDGCE 246
CQ ++ GC
Sbjct: 237 VL-----CQANELGCH 247
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLL 401
+T + L R+TD+G L K L +L++ +TDAGVK L LT L
Sbjct: 36 VTKVSLSFTRVTDTGLKELAALKGLTTLDLSYTEVTDAGVKALAALKALTALGLKGLTTL 95
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+L+ +TD ++ ++ L L +L++S++ +T GL+ L L L +L L VT
Sbjct: 96 DLTFT-RVTDAGVKALAALKALTTLDLSHTLVTDEGLKELAALGALNTLGLGGTSVTDAG 154
Query: 462 IKRLQS 467
+K L +
Sbjct: 155 VKELAA 160
>gi|395845616|ref|XP_003795523.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Otolemur
garnettii]
Length = 401
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 186/381 (48%), Gaps = 66/381 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKRL 465
L+ L L ++T ++ KRL
Sbjct: 381 PCLKVLNLGLWQMTDSE-KRL 400
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
>gi|126340111|ref|XP_001366661.1| PREDICTED: f-box/LRR-repeat protein 14-like [Monodelphis domestica]
Length = 400
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTESEKVR 400
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 161/326 (49%), Gaps = 46/326 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEI 379
L+G RIT G + L+ L +
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNL 388
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
+
Sbjct: 395 E 395
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|291392871|ref|XP_002712822.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryctolagus cuniculus]
Length = 400
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L++LN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LK+LNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKTLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|290972542|ref|XP_002669011.1| predicted protein [Naegleria gruberi]
gi|284082551|gb|EFC36267.1| predicted protein [Naegleria gruberi]
Length = 335
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 160/324 (49%), Gaps = 9/324 (2%)
Query: 96 DGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
D LE + +SN + L+ ++ +T Q A L NL L + RC+ G N+
Sbjct: 3 DCNLETINEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQ 62
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +++ L + C N I + + + NL L++S +++ D G+ + L KL L+L
Sbjct: 63 LKQIKYL--RACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLG 120
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+T L SL+ L L LNL ++++ E S L L +L++ + IG+EG +
Sbjct: 121 ENEITDQGLKSLNNLEKLVTLNLKNNKITN--LETISHLK-LTNLDVTTNKIGNEGAKYI 177
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ LK L ++D + S G + LSG+T L I L I D + L +L+ L+L
Sbjct: 178 AEMKRLKVLRINDNHITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLK 237
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
IT GL + L L L + +I+D GA Y+ NL +L +C + G + I
Sbjct: 238 GAGITGEGLKTICELINLRRLHVSHNQISDLGAKYISGMNNLTALNVCDCNIGFEGAQFI 297
Query: 393 KDLSSLTLLNLSQNCNLTDKTLEL 416
++ SL L++++N NLT ++L
Sbjct: 298 SNMQSLADLDITKN-NLTTNGIKL 320
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 150/303 (49%), Gaps = 11/303 (3%)
Query: 167 CITDSDMKPLSG-----LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
CI S++ P S L+NL +L I+ + D G + L+++ L + +
Sbjct: 22 CINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKYLRACENGIGSIGA 81
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
++ + +L L L+ ++ DDG E +L+ L L+L I D+GL +L L L L
Sbjct: 82 RNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQGLKSLNNLEKLVTL 141
Query: 282 ELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L + ++ + + HL LTNL+ ++ I + + +A + LK L ++ IT G
Sbjct: 142 NLKNNKITNLETISHLK-LTNLD---VTTNKIGNEGAKYIAEMKRLKVLRINDNHITSDG 197
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
L+ +T LT + L I D GA + NL L++ G G+T G+K I +L +L
Sbjct: 198 AKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITGEGLKTICELINLRR 257
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L++S N ++D + ISG+ L +LNV + I G + + +++L L + +T N
Sbjct: 258 LHVSHN-QISDLGAKYISGMNNLTALNVCDCNIGFEGAQFISNMQSLADLDITKNNLTTN 316
Query: 461 DIK 463
IK
Sbjct: 317 GIK 319
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 127/246 (51%), Gaps = 6/246 (2%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
++ +S L L +N +L+ ++L+NL +L+++ C I D G N++ L +K
Sbjct: 9 INEISNHSKLTELCINSSELTPQSAHLIAKLSNLTNLSINRCSIADLGTNNISQLKQIKY 68
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L + +GS G R++ + NL + LS I D L + LS L L+L +ITD G
Sbjct: 69 LRACENGIGSIGARNIGEMKNLTLLELSGNRIGDDGLESIGKLSKLAYLDLGENEITDQG 128
Query: 341 LAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L +L +L L L+L +IT+ ++L+ L +L++ + + G K+I ++ L
Sbjct: 129 LKSLNNLEKLVTLNLKNNKITNLETISHLK----LTNLDVTTNKIGNEGAKYIAEMKRLK 184
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+L ++ N ++T +++SG+T L + + ++ I G + L NL L L+ +T
Sbjct: 185 VLRINDN-HITSDGAKILSGMTQLTCIFLCDNLIGDEGALSIGLLYNLEYLDLKGAGITG 243
Query: 460 NDIKRL 465
+K +
Sbjct: 244 EGLKTI 249
>gi|149279200|ref|ZP_01885332.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
gi|149229962|gb|EDM35349.1| hypothetical protein PBAL39_12805 [Pedobacter sp. BAL39]
Length = 1105
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 201/459 (43%), Gaps = 55/459 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++ +++S SD+ GL C+ NLQ L +F + + D LE RG +L L+ RN
Sbjct: 605 QIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNM-LEDKYLEVFRGAESLRYLNLDRN 663
Query: 117 NAITAQGMKAFAGLINLVKLDLERCT------RIHGGLVNLKG----LMKLE-------- 158
++ F GL NL LDL ++ G NLK L +LE
Sbjct: 664 R-FNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLNELEGHGFDIFE 721
Query: 159 -SLNIKW----CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ ++W N +TD ++ S +L +L ++ ++ SG YLK + L L+L
Sbjct: 722 STTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLKNAKSLDTLSLSD 781
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL---- 269
P+ + L L L YL L +L D G + F+ LE + L + GI D+ L
Sbjct: 782 NPIDSQYLIHFRNLDKLNYLELGNIRLGD-GLKYFTNSYLLEDIRLYNTGITDQDLQSLV 840
Query: 270 -------VNLTG--------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
++ +G L L+ L+++D Q+GSS ++ +NLS
Sbjct: 841 FGNKLKRIDFSGNALTGEVFDIFRGKLEFLERLDINDNQIGSSLPDIFKDSHHINEVNLS 900
Query: 309 FTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
T I+ G L + ++L L + + D L+ L L+L G R T S
Sbjct: 901 NTQINPGHLNYFSHCAATLTRLYMSNLNLQDNDLSVFGGFQQLKDLNLSGNRFTGSFLIQ 960
Query: 368 LRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L++ L L + L D + +++ SSL LNLSQN D + L + + L L
Sbjct: 961 LKHLATELEELNLANNQLNDQNLYYLEAFSSLNTLNLSQNLVEGDGLINLRTSASVLEVL 1020
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N+S + I+ L+ L+ + L+ + L K + +K L
Sbjct: 1021 NLSGNSISDDDLQFLEHARFLKEVRLADNKFNGSCVKFL 1059
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 4/258 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCGIGDE 267
+ G + L + + ++R L G FS NL+ L L + D+
Sbjct: 585 VQFSGIVIQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDK 644
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L G +L+ L L + S LR+ GL NLE ++LS+ I+D +L+ L +LK
Sbjct: 645 YLEVFRGAESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLK 703
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
S+NL ++ G S T L L L R+TD Y +L +L + +
Sbjct: 704 SINLHLNELEGHGFDIFESTTELEWLTLGSNRLTDDCLRYFSRNLDLTALYLNENQFNGS 763
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G ++K+ SL L+LS N + + L L L L + N R+ GL++ L
Sbjct: 764 GFVYLKNAKSLDTLSLSDNP-IDSQYLIHFRNLDKLNYLELGNIRL-GDGLKYFTNSYLL 821
Query: 448 RSLTLESCKVTANDIKRL 465
+ L + +T D++ L
Sbjct: 822 EDIRLYNTGITDQDLQSL 839
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG 322
I DE L G + +E+S + + GL S NL+ + LSF + D L G
Sbjct: 592 IQDEMLSCFEGCDQIVQIEISRSDLEGHGLAFFSSCAINLQILQLSFNMLEDKYLEVFRG 651
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
SL+ LNLD + + L L L HLDL ITD L + NL+S+ +
Sbjct: 652 AESLRYLNLDRNRFNGSCLRNFVGL-NLEHLDLSYNEITDDNLKLLGSCPNLKSINLHLN 710
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
L G + + L L L N LTD L S L +L ++ ++ +G +LK
Sbjct: 711 ELEGHGFDIFESTTELEWLTLGSN-RLTDDCLRYFSRNLDLTALYLNENQFNGSGFVYLK 769
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRD 469
K+L +L+L + + + ++ D
Sbjct: 770 NAKSLDTLSLSDNPIDSQYLIHFRNLD 796
>gi|344278047|ref|XP_003410808.1| PREDICTED: F-box/LRR-repeat protein 14 [Loxodonta africana]
Length = 514
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 187/386 (48%), Gaps = 67/386 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYHLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF GISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDL 470
L+ L L ++T D ++ SR+
Sbjct: 381 PCLKVLNLGLWQMT--DSEKTSSREF 404
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 161/322 (50%), Gaps = 28/322 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYHLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-Q 239
L + C K+TD + ++ +GL L LLNL C ++ A L LS +GSL LNL C
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265
Query: 240 LSDDGCEKFS----RLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGL- 293
+SD G + RL+ L+ D +GD+ L + GL LK L L + G+
Sbjct: 266 ISDTGIMHLAMGSLRLSGLDVSFCDK--VGDQSLAYIAQGLDGLKSLSLCSCHISDDGIN 323
Query: 294 RHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
R + + L ++N+ I+D L +A LS L ++L +IT GL +T L L
Sbjct: 324 RMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCL 383
Query: 351 THLDLFGARITDSGAAYLRNFK 372
L+L ++TDS R F+
Sbjct: 384 KVLNLGLWQMTDSEKTSSREFQ 405
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
>gi|410963525|ref|XP_003988315.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Felis catus]
Length = 411
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 59 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 112
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 113 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 170
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 171 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 197
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 198 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 252
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 253 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 311
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 312 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 371
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 372 PCLKVLNLGLWQMTDSEKVR 391
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 170/346 (49%), Gaps = 48/346 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 77 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 136
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 137 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 196
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 197 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 233
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 234 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 293
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 294 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 353
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 354 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 397
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 206 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 265
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 266 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 325
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 326 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 385
Query: 242 D 242
D
Sbjct: 386 D 386
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 80 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 138
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 139 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 194
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 195 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 253
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 254 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 313
Query: 463 KRL 465
R+
Sbjct: 314 NRM 316
>gi|345791735|ref|XP_543882.2| PREDICTED: F-box/LRR-repeat protein 14 [Canis lupus familiaris]
Length = 420
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 168/342 (49%), Gaps = 48/342 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 90 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 149
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 150 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C K+TD + ++ +GL L LLNL C +SD G
Sbjct: 210 QDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GISDAGL 246
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTN 301
S + +L SLNL SC I D G+++L G L L++S +VG L +++ GL
Sbjct: 247 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDG 306
Query: 302 LESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG- 357
L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 307 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 366
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
RIT G + L+ L + +TD+ + ++D S
Sbjct: 367 TRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 209/477 (43%), Gaps = 53/477 (11%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNL 83
LE FR ++Q++ L V+ +W+ + S L + L+ V S + L S L
Sbjct: 90 LEVFRH-SVQEIDLSGDIAVDAEWLAYLGS-FRYLGVLKLADCKKVDHSAIWPLSGMSML 147
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
+ LD + C +I+D G++H+ + +L L +T G+ + L L+ LDL
Sbjct: 148 KELDLSRCSKITDAGIKHIVSIDSLEKLHLS-ETGLTDNGVMLISALKGLILLDLGGIHM 206
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
L +L+ L +LE L++ W + ITD L T L+ L +S + VT L L
Sbjct: 207 TDKALRSLQVLTQLEHLDV-WGSEITDEGASILEAFTGLRFLNVSWTHVTR-----LPHL 260
Query: 204 QKLTLLNLEGCPVTAAC---------LDSLSALGSLF----------------YLNLNRC 238
+ LN+ C + + C L +A + F +L+++ C
Sbjct: 261 PNMKYLNMSNCTIYSICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGC 320
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLS 297
LS+ ++ +LE L++ + D+ + + + L+ L L +T + S L L+
Sbjct: 321 SLSN--LYGLQKMKSLEHLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILA 378
Query: 298 G-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G + NL S++L++T I D +L ++ + SL+ ++L + T++ G T ++
Sbjct: 379 GTVPNLASLSLAYTKIDDSALVYISMMPSLRVIDL-----------SHTTIKGFTRVEAN 427
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I L + L SL + L+D + + +L L L + L+D L
Sbjct: 428 SEKIP--SLPLLEHLIYLESLNLEDAPLSDEVIPPMTSFRALKYLYLKSDF-LSDPGLHA 484
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+S + L+ L S ++++GL P L L L C + D R P++
Sbjct: 485 LSSASNLIHLGFCGSVLSNSGLLEFVPPAQLHVLDLSGCWILTGDAISTFRRHHPSI 541
>gi|301756605|ref|XP_002914145.1| PREDICTED: f-box/LRR-repeat protein 14-like [Ailuropoda
melanoleuca]
Length = 420
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 170/346 (49%), Gaps = 48/346 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L+G RIT G + L+ L + +TD+ + ++D S
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS--EKVRDCSDFA 406
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|417399805|gb|JAA46888.1| Putative f-box/lrr-repeat protein 14 [Desmodus rotundus]
Length = 368
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 36 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 89
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 90 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 147
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 148 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 174
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 175 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 229
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 230 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 288
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 289 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 348
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 349 PCLKVLNLGLWQMTDSEKVR 368
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 166/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ +S+L +L+ IT + A + L
Sbjct: 54 IQGMANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGL 113
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 114 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 173
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 174 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 210
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 211 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 270
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 271 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 330
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 331 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 183 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 242
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 243 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 302
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 303 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 362
Query: 242 D 242
D
Sbjct: 363 D 363
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + ++ L L C +++D+ +G ++L GL
Sbjct: 57 MANIESLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 115
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 116 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 171
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 172 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 230
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 231 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 290
Query: 463 KRL 465
R+
Sbjct: 291 NRM 293
>gi|343413823|emb|CCD21194.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 707
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 227/428 (53%), Gaps = 44/428 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L + S+L++L +
Sbjct: 228 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLGLSH 282
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L +L IT + + L +L LDL CT G+ +
Sbjct: 283 CTGITD--VSPLSELSSLRTLDLSHCTGIT--DVSPLSELSSLRTLDLSHCT----GITD 334
Query: 151 LKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLT 207
+ L KL SL + + C +D+ PLS L++L++L S C+ +TD S ++ L GL+ L
Sbjct: 335 VSPLSKLSSLRTLYFLYCTGITDVSPLSELSSLRTLYFSHCTGITDVSPLSELSGLRMLY 394
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGD 266
L + G +T + LS SL L+ + C D S+L++L +L+L C GI D
Sbjct: 395 LSHCTG--ITD--VSPLSVFSSLRMLDFSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD 449
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSS 325
+ L+ L +L L+LS G + + LS L++L +++LS TGI+D S L+ LSS
Sbjct: 450 --VSPLSELSSLHTLDLSHCT-GITDVSPLSELSSLRTLDLSHCTGITDVS--PLSELSS 504
Query: 326 LKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-G 382
L +L+L ITD ++ L+ L+ L LDL ITD + L F +L +L++
Sbjct: 505 LCTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCT 560
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
G+TD V + +LSSL +LNLS +TD + +S + L +L++S+ G+ +
Sbjct: 561 GITD--VSPLSELSSLRMLNLSHCTGITD--VSPLSEFSSLHTLDLSH----CTGITDVS 612
Query: 443 PLKNLRSL 450
PL L SL
Sbjct: 613 PLSKLSSL 620
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 203/401 (50%), Gaps = 53/401 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L IT + + L +L L
Sbjct: 177 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTGIT--DVSPLSKLSSLRTL 232
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 233 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLGLSHCTGITD 288
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
++ L L L L+L C + LS L SL L+L+ C D S+L++L
Sbjct: 289 --VSPLSELSSLRTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSL 344
Query: 255 ESLNLDSC-GIGD-EGLVNLTGLCNL---KCLELSDTQVGS--SGLR-----HLSGLTNL 302
+L C GI D L L+ L L C ++D S SGLR H +G+T++
Sbjct: 345 RTLYFLYCTGITDVSPLSELSSLRTLYFSHCTGITDVSPLSELSGLRMLYLSHCTGITDV 404
Query: 303 ESIN-------LSF---TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLT 351
++ L F TGI+D S L+ LSSL++L+L ITD ++ L+ L+ L
Sbjct: 405 SPLSVFSSLRMLDFSHCTGITDVS--PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLH 460
Query: 352 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LDL ITD + L +LR+L++ G+TD V + +LSSL L+LS +
Sbjct: 461 TLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLSHCTGI 516
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TD + +S L+ L +L++S+ G+ + PL SL
Sbjct: 517 TD--VSPLSELSSLRTLDLSH----CTGITDVSPLSEFSSL 551
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 54 SQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ SSL ++DLS + +TD + L + S+L +LD + C I+D + L LS+L L+
Sbjct: 523 SELSSLRTLDLSHCTGITD--VSPLSEFSSLHTLDLSHCTGITD--VSPLSELSSLRMLN 578
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI-KWCNCITDS 171
IT + + +L LDL CT G+ ++ L KL SL+I +C +
Sbjct: 579 LSHCTGIT--DVSPLSEFSSLHTLDLSHCT----GITDVSPLSKLSSLHILGLSHCTGIT 632
Query: 172 DMKPLSGLTNLKSLQIS-CSKVTD 194
D+ PL+ + + L +S C+ +TD
Sbjct: 633 DVSPLTTIIGFEKLYLSNCTGITD 656
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 110/212 (51%), Gaps = 26/212 (12%)
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
S ++L L L C GI D + L+ L +L+ L+LS G + + LS ++LE
Sbjct: 14 SPLSVFSSLRMLYLSHCTGITD--VSPLSKLSSLRTLDLSHCT-GITDVSPLSVFSSLEK 70
Query: 305 INLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR---- 359
++LS TGI+D S L+ LSSL++L+L TG+ ++ L+ L+ L G
Sbjct: 71 LDLSHCTGITDVS--PLSKLSSLRTLDLSHC----TGITDVSPLSKLSSLHTLGLSHCTG 124
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
ITD + L +L +L++ G+TD V + +LSSL L LS +TD + +S
Sbjct: 125 ITD--VSPLSKLSSLHTLDLSHCTGITD--VSPLSELSSLRTLGLSHCTGITD--VSPLS 178
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L+ L +L++S+ G+ + PL L SL
Sbjct: 179 ELSSLRTLDLSH----CTGITDVSPLSKLSSL 206
>gi|290974952|ref|XP_002670208.1| leucine-rich repeat protein [Naegleria gruberi]
gi|284083764|gb|EFC37464.1| leucine-rich repeat protein [Naegleria gruberi]
Length = 252
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 1/249 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LTLL++ V S+S + L LN++ ++ D G S + L SLN+ S
Sbjct: 1 MKQLTLLDIYCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
G+EG +++ + L L + Q+G G++ +S + L S+++ + GI ++
Sbjct: 61 KFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SL++ QI D G +++ L LT L + +I D GA + K L SL I
Sbjct: 121 MKQLTSLDICLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISAN 180
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ G + I +L LT L S N + + ++ IS + L SL++ N+RI + G+ L
Sbjct: 181 QIGVKGAESISELKQLTSLAASAN-QIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLT 239
Query: 443 PLKNLRSLT 451
L +L+ L
Sbjct: 240 SLTSLKFLV 248
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 115/238 (48%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+CN + K +S + L SL IS +++ D G ++ G+++LT LN+ S
Sbjct: 10 YCNQVGVEGAKSISEMKQLTSLNISNNEIGDKGANFISGMKQLTSLNIGSNKFGNEGAKS 69
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L L + Q+ D+G + S + L S+++ GIG +G +++ + L L++
Sbjct: 70 ISEMKQLTVLYIGLNQIGDEGVKFISEMKRLTSVDICYNGIGVKGANSISEMKQLTSLDI 129
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
Q+G G + +S L L + +S I D + ++ L L SL + A QI G +
Sbjct: 130 CLNQIGDEGAKSISELEQLTLLYISANQIGDEGAKSISELKQLTSLAISANQIGVKGAES 189
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ L LT L +I G ++ K L SL+I + GV + L+SL L
Sbjct: 190 ISELKQLTSLAASANQIGAEGVKFISEMKQLTSLDIGNNRIGAEGVTLLTSLTSLKFL 247
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 2/211 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D G + G+ LTSL+ +N +G K+ + + L L + G+ +
Sbjct: 37 EIGDKGANFISGMKQLTSLNIG-SNKFGNEGAKSISEMKQLTVLYIGLNQIGDEGVKFIS 95
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L S++I + N I +S + L SL I +++ D G + L++LTLL +
Sbjct: 96 EMKRLTSVDICY-NGIGVKGANSISEMKQLTSLDICLNQIGDEGAKSISELEQLTLLYIS 154
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ S+S L L L ++ Q+ G E S L L SL + IG EG+ +
Sbjct: 155 ANQIGDEGAKSISELKQLTSLAISANQIGVKGAESISELKQLTSLAASANQIGAEGVKFI 214
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
+ + L L++ + ++G+ G+ L+ LT+L+
Sbjct: 215 SEMKQLTSLDIGNNRIGAEGVTLLTSLTSLK 245
>gi|374586212|ref|ZP_09659304.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
gi|373875073|gb|EHQ07067.1| hypothetical protein Lepil_2392 [Leptonema illini DSM 21528]
Length = 346
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 2/267 (0%)
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD+ + L +Q+L L+L G T A L L+ L LNL+ ++D G + ++
Sbjct: 62 TDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSIGQIK 121
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
LE L+L I D G+ +L GL LK L L DT V + + + + +LE + L+ TGI
Sbjct: 122 TLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGI 181
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D + +L L+ L L +TD + + + L +I G LR K
Sbjct: 182 TDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAK 241
Query: 373 NLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
NLR L + + D ++ ++ L +L+L + +T KT+E I+ + L V +
Sbjct: 242 NLRRLWLADTSVDDDDLIELLQPPMELDMLHLG-HLKITGKTMEAIARCNCVKDLYVGYT 300
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+I + L L P L+S+T+ +VT
Sbjct: 301 KIGNDDLLKLIPATRLKSITVTKTRVT 327
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 8/243 (3%)
Query: 79 DCSNLQSLD-FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
D + +++++ + + Q+ + +R + + +L T M + L KL
Sbjct: 26 DWAKVRAIEQYVYTGQLKGVTMAEIRAVKDWYAL------GATDAEMPRLLSMQRLEKLS 79
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L LV+L G L+ LN+ ITD+ +K + + L+ L ++ +K+TD+G+
Sbjct: 80 LGGQNYTDAALVHLAGFKHLKELNLS-TGPITDAGLKSIGQIKTLEKLDLAETKITDAGV 138
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
A L GL +L L+L VT AC+ S+ + SL L LN ++D G E+ + L L
Sbjct: 139 ADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLNMTGITDRGVEQLIQHQRLRKL 198
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + DE + + + NL S T++ GL L NL + L+ T + D L
Sbjct: 199 ILGGTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVRLRQAKNLRRLWLADTSVDDDDL 258
Query: 318 RKL 320
+L
Sbjct: 259 IEL 261
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 1/205 (0%)
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
+ G D + L + L+ L L + L HL+G +L+ +NLS I+D L+ +
Sbjct: 58 ALGATDAEMPRLLSMQRLEKLSLGGQNYTDAALVHLAGFKHLKELNLSTGPITDAGLKSI 117
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ +L+ L+L +ITD G+A L L+ L L L +TD+ + K+L L++
Sbjct: 118 GQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSLIDTAVTDACMTSIMQMKSLEILQLN 177
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
G+TD GV+ + L L L +TD+++ ++ + L S ++I GL
Sbjct: 178 MTGITDRGVEQLIQHQRLRKLILG-GTAVTDESVGYVAQIANLDEAVFSRTKIRGKGLVR 236
Query: 441 LKPLKNLRSLTLESCKVTANDIKRL 465
L+ KNLR L L V +D+ L
Sbjct: 237 LRQAKNLRRLWLADTSVDDDDLIEL 261
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 37/341 (10%)
Query: 3 PRDISQ-QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP-GVNDKWMDVIASQGSSLL 60
P D ++ + + VY+ L V++ R A++D Y G D M + S L
Sbjct: 24 PADWAKVRAIEQYVYTGQLKGVTMAEIR--AVKDW----YALGATDAEMPRLLSM-QRLE 76
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L G + TD+ L+HL G +HL+ L NL++ IT
Sbjct: 77 KLSLGGQNYTDAALVHL-------------------AGFKHLKEL-NLST------GPIT 110
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G+K+ + L KLDL G+ +L GL +L+ L++ +TD+ M + +
Sbjct: 111 DAGLKSIGQIKTLEKLDLAETKITDAGVADLVGLSRLKDLSL-IDTAVTDACMTSIMQMK 169
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L+ LQ++ + +TD G+ L Q+L L L G VT + ++ + +L +R ++
Sbjct: 170 SLEILQLNMTGITDRGVEQLIQHQRLRKLILGGTAVTDESVGYVAQIANLDEAVFSRTKI 229
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSGL 299
G + + NL L L + D+ L+ L L L L ++ + ++
Sbjct: 230 RGKGLVRLRQAKNLRRLWLADTSVDDDDLIELLQPPMELDMLHLGHLKITGKTMEAIARC 289
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
++ + + +T I + L KL + LKS+ + ++TD G
Sbjct: 290 NCVKDLYVGYTKIGNDDLLKLIPATRLKSITVTKTRVTDDG 330
>gi|290994542|ref|XP_002679891.1| predicted protein [Naegleria gruberi]
gi|284093509|gb|EFC47147.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 147/308 (47%), Gaps = 2/308 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+G + L +L LD+ + G ++ + +L LNI N I K +
Sbjct: 51 VNAEGANMISNLAHLADLDISNNQLLERGSKIIREMTQLTKLNISRNN-INAGGTKSICE 109
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T L L IS + + + G +Y+ G+ KLT L++ + + SL + +L LN++ C
Sbjct: 110 MTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSC 169
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ D+G S + L +L + IG G ++ + L L + +G+ G ++
Sbjct: 170 KIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGI 229
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +++S IS + L+ LS L L+++ +I D G+ +++ L L +LD+
Sbjct: 230 MEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISKLDQLLYLDIGEN 289
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D G + L L I + + G + + + LT L++ N + D +LEL+S
Sbjct: 290 EIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNNP-VNDDSLELLS 348
Query: 419 GLTGLVSL 426
L L++
Sbjct: 349 KLPDLINF 356
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 3/322 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D+S V G + + ++L LD + Q+ + G + +R ++ LT L+ RNN
Sbjct: 41 LTKLDVSSWLVNAEGANMISNLAHLADLDISNN-QLLERGSKIIREMTQLTKLNISRNN- 98
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I A G K+ + L LD+ + G + G+ KL +L+I N I +K L
Sbjct: 99 INAGGTKSICEMTQLTDLDISNNFIGNEGASYIGGMTKLTNLSISE-NHIGVEGIKSLFH 157
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL L IS K+ D G + +++LT L + + + ++S + L LN+
Sbjct: 158 INNLICLNISSCKIGDEGARLISEMKQLTTLEISHNEIGSYGSKAISEMYQLTKLNIRYN 217
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
L ++G + L L++ I EG +L+ L L L+++ ++G G++ +S
Sbjct: 218 VLGNEGAHYIGIMEQLTELDISHNRISGEGAKSLSKLSQLTKLDINTNEIGDEGMKSISK 277
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L +++ I D + G+S L L ++ ++ + G +L + LT LD+
Sbjct: 278 LDQLLYLDIGENEIGDIGTGLIIGMSKLTELLINDNRVGNDGAESLAQMHQLTQLDICNN 337
Query: 359 RITDSGAAYLRNFKNLRSLEIC 380
+ D L +L + C
Sbjct: 338 PVNDDSLELLSKLPDLINFYFC 359
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 139/305 (45%), Gaps = 9/305 (2%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
G+ L S +K CN I + G L L +S V G + L L L++
Sbjct: 20 GIGTLVSDTVKLCNFI------RMCG--KLTKLDVSSWLVNAEGANMISNLAHLADLDIS 71
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ + + L LN++R ++ G + +T L L++ + IG+EG +
Sbjct: 72 NNQLLERGSKIIREMTQLTKLNISRNNINAGGTKSICEMTQLTDLDISNNFIGNEGASYI 131
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
G+ L L +S+ +G G++ L + NL +N+S I D R ++ + L +L +
Sbjct: 132 GGMTKLTNLSISENHIGVEGIKSLFHINNLICLNISSCKIGDEGARLISEMKQLTTLEIS 191
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+I G A++ + LT L++ + + GA Y+ + L L+I ++ G K +
Sbjct: 192 HNEIGSYGSKAISEMYQLTKLNIRYNVLGNEGAHYIGIMEQLTELDISHNRISGEGAKSL 251
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LS LT L+++ N + D+ ++ IS L L+ L++ + I G + + L L +
Sbjct: 252 SKLSQLTKLDINTN-EIGDEGMKSISKLDQLLYLDIGENEIGDIGTGLIIGMSKLTELLI 310
Query: 453 ESCKV 457
+V
Sbjct: 311 NDNRV 315
>gi|18204097|gb|AAH21329.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
Length = 400
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|115495249|ref|NP_001069415.1| F-box/LRR-repeat protein 14 [Bos taurus]
gi|225543352|ref|NP_598701.2| F-box/LRR-repeat protein 14 [Mus musculus]
gi|404312677|ref|NP_001258205.1| F-box/LRR-repeat protein 14 [Rattus norvegicus]
gi|296211085|ref|XP_002752262.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Callithrix
jacchus]
gi|332249161|ref|XP_003273733.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Nomascus
leucogenys]
gi|348555895|ref|XP_003463758.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cavia porcellus]
gi|395845614|ref|XP_003795522.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 1 [Otolemur
garnettii]
gi|48428059|sp|Q8BID8.1|FXL14_MOUSE RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|122144674|sp|Q17R01.1|FXL14_BOVIN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|26351129|dbj|BAC39201.1| unnamed protein product [Mus musculus]
gi|74196388|dbj|BAE33081.1| unnamed protein product [Mus musculus]
gi|109659305|gb|AAI18094.1| F-box and leucine-rich repeat protein 14 [Bos taurus]
gi|119609336|gb|EAW88930.1| F-box and leucine-rich repeat protein 14, isoform CRA_c [Homo
sapiens]
gi|148667199|gb|EDK99615.1| F-box and leucine-rich repeat protein 14 [Mus musculus]
gi|149049602|gb|EDM02056.1| rCG29594 [Rattus norvegicus]
gi|296487055|tpg|DAA29168.1| TPA: F-box/LRR-repeat protein 14 [Bos taurus]
Length = 400
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 381 PCLKVLNLGLWQMTDSEKVR 400
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|149173736|ref|ZP_01852365.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148847266|gb|EDL61600.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 496
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 156/314 (49%), Gaps = 16/314 (5%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLN 210
GL + + N++ N ITD + L+ L++L+SL + ++VTD+G+ YL L +L L+
Sbjct: 116 PGLRPVPAANVRR-NQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLS 174
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD------GCEKFSRLTNLESLNLDSCGI 264
L +T A L +L +L L +NL +S++ G + FS L LNL + +
Sbjct: 175 LACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFS----LRRLNLSNTAV 230
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
D+ L L LELSDT + + + L + L+FT I+D +R LA
Sbjct: 231 NDQALAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCG 290
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L+ L L +ITDT L L +G+ L L ITD+G L +F L SL++ L
Sbjct: 291 HLRKLELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQKTSL 349
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
TD G++ + + ++L L L N ++ +E + L N I +AGL L
Sbjct: 350 TDKGLRFLSEATNLKQLQLD-NTEISHAGIEFLLSLPLESL--SLNPGIDNAGLNTLVRH 406
Query: 445 KNLRSLTLESCKVT 458
+LR+L + +C VT
Sbjct: 407 NSLRNLAIWNCNVT 420
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 132/290 (45%), Gaps = 29/290 (10%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNL 235
GL + + + +++TD G+ YL L L LNL+ VT A L L L L L+L
Sbjct: 116 PGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELPRLQRLSL 175
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGL 293
++D L LES+NL + +E ++NL G +L+ L LS+T V L
Sbjct: 176 ACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNTAVNDQAL 235
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ L + LS TGI+D + + L L L+ ITD G+ L + L L
Sbjct: 236 AECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKL 295
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+LF +ITD+ +L + + L + +TDAG+ + D +L L+L Q +LTDK
Sbjct: 296 ELFKTKITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDL-QKTSLTDK- 352
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
GLR L NL+ L L++ +++ I+
Sbjct: 353 -----------------------GLRFLSEATNLKQLQLDNTEISHAGIE 379
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 54/348 (15%)
Query: 57 SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S++L + VTD+GL+ +L + LQ L C+ I+D L L L+ L S++
Sbjct: 143 SSLRSLNLQATRVTDAGLLQYLPELPRLQRLSLA-CLDITDAALLALESLAWLESINLGH 201
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
TA +A L+ L R + VN + L + C+ DS +
Sbjct: 202 ----TAVSNEAILNLVGAKAFSLRRLN-LSNTAVNDQALAE----------CLPDSQLNK 246
Query: 176 L----SGLTN-----------LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
L +G+T+ L L ++ + +TD G+ +L L L L +T
Sbjct: 247 LELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLANCGHLRKLELFKTKITDTS 306
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L L+ G + L L ++D G + LESL+L + D+GL L+ NLK
Sbjct: 307 LVWLADSG-IEDLGLGFTAITDAGIPALTDFPALESLDLQKTSLTDKGLRFLSEATNLKQ 365
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-- 338
L+L +T++ +G+ L L GI + L L +SL++L + +T+
Sbjct: 366 LQLDNTEISHAGIEFLLSLP--LESLSLNPGIDNAGLNTLVRHNSLRNLAIWNCNVTNWQ 423
Query: 339 -----------------TGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
T L+ L L L +L L+G R + + A LR
Sbjct: 424 PLMKLELLEVLLIDDSVTDLSPLRELDQLKYLLLWGDRFSPTELARLR 471
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 123/321 (38%), Gaps = 86/321 (26%)
Query: 230 LFY-----LNLNRCQLSDDGCEKFSRLTNLESLNLD-----------------------S 261
+FY L L+ +SD G + NLE L L +
Sbjct: 49 IFYPGFEALILDNTSISDAGLNFIGEMRNLERLGLYDTLVSDDGLKPLLKLSKLEKLNIA 108
Query: 262 CGIG--------------------DEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLT 300
C G D GL LT L +L+ L L T+V +G L++L L
Sbjct: 109 CAPGCLSPGLRPVPAANVRRNQITDRGLGYLTELSSLRSLNLQATRVTDAGLLQYLPELP 168
Query: 301 NL------------------------ESINLSFTGISDGSLRKLAGLS--SLKSLNLDAR 334
L ESINL T +S+ ++ L G SL+ LNL
Sbjct: 169 RLQRLSLACLDITDAALLALESLAWLESINLGHTAVSNEAILNLVGAKAFSLRRLNLSNT 228
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+ D LA + L L+L ITD+ + L L + +TD GV+H+ +
Sbjct: 229 AVNDQALAECLPDSQLNKLELSDTGITDAACQSCVECEWLTDLCLNFTDITDDGVRHLAN 288
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L L L + +TD +L ++ +G+ L + + IT AG+ L L SL L+
Sbjct: 289 CGHLRKLELFKT-KITDTSLVWLAD-SGIEDLGLGFTAITDAGIPALTDFPALESLDLQK 346
Query: 455 CKVT---------ANDIKRLQ 466
+T A ++K+LQ
Sbjct: 347 TSLTDKGLRFLSEATNLKQLQ 367
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
++ +T+ SL D ++DL LG + + D + + + +L S+DL + +TD GL
Sbjct: 297 LFKTKITDTSLVWLADSGIEDLGLG-FTAITDAGIPAL-TDFPALESLDLQKTSLTDKGL 354
Query: 75 IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
L + +NL+ L + +IS G+E L +L S N I G+ +L
Sbjct: 355 RFLSEATNLKQLQLD-NTEISHAGIEF---LLSLPLESLSLNPGIDNAGLNTLVRHNSLR 410
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKV 192
L + C + N + LMKLE L + I DS D+ PL L LK L + +
Sbjct: 411 NLAIWNC-----NVTNWQPLMKLELLEVL---LIDDSVTDLSPLRELDQLKYLLLWGDRF 462
Query: 193 TDSGIAYLK 201
+ + +A L+
Sbjct: 463 SPTELARLR 471
>gi|290984031|ref|XP_002674731.1| predicted protein [Naegleria gruberi]
gi|284088323|gb|EFC41987.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 129/276 (46%), Gaps = 4/276 (1%)
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L N+ L++ + LV +K L +L N N I + K +S L L L I
Sbjct: 76 LQNIATLEINTTFDNYKKLVLMKSLTELIGCN----NNIGNEGAKYISKLKQLTHLYILN 131
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D G Y+ L +L L++ + +S L L L+++ + +G + +
Sbjct: 132 NEIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIA 191
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+ L LN+ + IG EG + L L CL + + + G +++S + L +N+S+
Sbjct: 192 EMNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISY 251
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I + ++ L L L++ QI G+ + + LT L I D GA Y+
Sbjct: 252 NNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYIS 311
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
K L +L+I +++ GVK I+++ LT+LN+ Q
Sbjct: 312 EMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNIRQ 347
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 4/274 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ +L+I+ + + +K L +L N A + L L L+ LN
Sbjct: 76 LQNIATLEINTTFDNYKKLVLMKSLTELIGCNNNIGNEGAKYISKLKQLTHLYILN---N 132
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ D+G + S L L SL++ IG EG ++ L L L++S +G+ G +H++
Sbjct: 133 EIDDEGAKYISELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAE 192
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +N+S I + + L L L + I G ++ + LT L++
Sbjct: 193 MNQLTILNISTNNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYN 252
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I GA Y+ K L L+I + GV++I +++ LT+L+ S N N+ D+ + IS
Sbjct: 253 NIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHN-NIGDEGAKYIS 311
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L +L++SN+ I++ G++ ++ +K+L L +
Sbjct: 312 EMKQLTNLDISNNSISNEGVKCIEEMKHLTVLNI 345
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 26/262 (9%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + G +++ L LT L + NN I +G K + L LV LD+
Sbjct: 110 IGNEGAKYISKLKQLTHL-YILNNEIDDEGAKYISELNQLVSLDISY------------- 155
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N I K +S L L +L IS + + G ++ + +LT+LN+
Sbjct: 156 ------------NNIGVEGAKYISELKQLTNLDISVNHIGAEGAQHIAEMNQLTILNIST 203
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + L L L + + +G + S + L LN+ I EG ++
Sbjct: 204 NNIGYEGAKYIGKLKQLTCLTIFNNNIDVEGAKYISEMKQLTDLNISYNNIDVEGAKYIS 263
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L L++S Q+G+ G+++++ + L ++ S I D + ++ + L +L++
Sbjct: 264 ELKQLTDLDISINQIGAKGVQYIAEMNQLTILSASHNNIGDEGAKYISEMKQLTNLDISN 323
Query: 334 RQITDTGLAALTSLTGLTHLDL 355
I++ G+ + + LT L++
Sbjct: 324 NSISNEGVKCIEEMKHLTVLNI 345
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 111/256 (43%), Gaps = 45/256 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ + L+S+D+S +++ G ++ + L +LD + I G +H+ ++ LT L+
Sbjct: 143 SELNQLVSLDISYNNIGVEGAKYISELKQLTNLDISVN-HIGAEGAQHIAEMNQLTILNI 201
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I +G K L L C I ++++G
Sbjct: 202 STNN-IGYEGAKYIGKLKQLT------CLTIFNNNIDVEG-------------------A 235
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L IS + + G Y+ L++LT L++ + A + ++ + L L
Sbjct: 236 KYISEMKQLTDLNISYNNIDVEGAKYISELKQLTDLDISINQIGAKGVQYIAEMNQLTIL 295
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ + + D+G + S + L +L++ + I +EG +KC+E +
Sbjct: 296 SASHNNIGDEGAKYISEMKQLTNLDISNNSISNEG---------VKCIE---------EM 337
Query: 294 RHLSGLTNLESINLSF 309
+HL+ L + + SF
Sbjct: 338 KHLTVLNIRQPVMFSF 353
>gi|332249163|ref|XP_003273734.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Nomascus
leucogenys]
gi|119609335|gb|EAW88929.1| F-box and leucine-rich repeat protein 14, isoform CRA_b [Homo
sapiens]
Length = 401
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 65/377 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTAND 461
L+ L L ++T ++
Sbjct: 381 PCLKVLNLGLWQMTDSE 397
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|46447568|ref|YP_008933.1| hypothetical protein pc1934 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401209|emb|CAF24658.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 261
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 144/244 (59%), Gaps = 12/244 (4%)
Query: 182 LKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQ 239
LK L +S CSK+T++G+A+L L+ L LNL C +T A L L+ L +L +L L+ C+
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 240 -LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHL 296
L+D G + LT L+ L L +C + D GLV+LT L +L+ L+LS+ + GL HL
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHL 122
Query: 297 SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD--ARQITDTGLAALTSLTGLTHL 353
+ LT L+ + LS ++D L L L++L++L L + +T GLA L LT L L
Sbjct: 123 TPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLRRWCQNLTGDGLAHLAPLTALQTL 182
Query: 354 DL-FGARITDSGAAYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
DL + + D+G A+L L++L + C LTDAG+ H+K L++L L+LS +LT
Sbjct: 183 DLSYCKNLKDAGLAHLTPLTALQTLGLKWCSK-LTDAGLAHLKPLAALQHLDLSHCRSLT 241
Query: 411 DKTL 414
D L
Sbjct: 242 DAGL 245
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 135/259 (52%), Gaps = 31/259 (11%)
Query: 206 LTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC- 262
L LNL GC +T A L L+ L +L +LNL+RC +L+D G + LT L+ L L C
Sbjct: 3 LKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCE 62
Query: 263 GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
+ D GL +L L L+ L L++ + GL HL+ LT+L+ ++LS
Sbjct: 63 NLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLS------------- 109
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEI- 379
+ +TD GL LT LT L HL L G +TD+G A+L L++L +
Sbjct: 110 ----------NCMNLTDDGLVHLTPLTALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLR 159
Query: 380 -CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAG 437
LT G+ H+ L++L L+LS NL D L ++ LT L +L + S++T AG
Sbjct: 160 RWCQNLTGDGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAG 219
Query: 438 LRHLKPLKNLRSLTLESCK 456
L HLKPL L+ L L C+
Sbjct: 220 LAHLKPLAALQHLDLSHCR 238
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 138/278 (49%), Gaps = 32/278 (11%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++LSG S +T++GL HL LQ L+ + C +++D GL HL L+ L L +T
Sbjct: 6 LNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYCENLT 65
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G+ A L L L L C + GLV+L L L+ L++ C +TD + L+ L
Sbjct: 66 DAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDDGLVHLTPL 125
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T L+ L +S C +TD+G+A+L L L L L C
Sbjct: 126 TALQHLVLSGCDNLTDAGLAHLTPLTALQTLGLR-----------------------RWC 162
Query: 239 Q-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRH 295
Q L+ DG + LT L++L+L C + D GL +LT L L+ L L +++ +GL H
Sbjct: 163 QNLTGDGLAHLAPLTALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAH 222
Query: 296 LSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
L L L+ ++LS ++D L + L++ SLNL+
Sbjct: 223 LKPLAALQHLDLSHCRSLTDAGLARFKILAT--SLNLE 258
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 349 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 406
L +L+L G +++T++G A+L K L+ L + LTDAG+ H+ L++L L LS
Sbjct: 2 ALKYLNLSGCSKLTNAGLAHLTPLKTLQHLNLSRCSRLTDAGLAHLTPLTALQHLGLSYC 61
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTAND 461
NLTD L ++ LT L L ++N + +T GL HL PL +L+ L L +C +D
Sbjct: 62 ENLTDAGLAHLALLTALQDLALANCKHLTDVGLVHLTPLTSLQHLDLSNCMNLTDD 117
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L ++DLS ++ D+GL HL + LQ+L +C +++D GL HL+ L+ L L
Sbjct: 177 TALQTLDLSYCKNLKDAGLAHLTPLTALQTLGLKWCSKLTDAGLAHLKPLAALQHLDLSH 236
Query: 116 NNAITAQGMKAFAGLINLVKLDLER 140
++T G+ F L + L++ R
Sbjct: 237 CRSLTDAGLARFKILATSLNLEIVR 261
>gi|343419347|emb|CCD19427.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1478
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 38/378 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +S+L +L+ IT + + LI L LDL
Sbjct: 725 SRLETLNLMYCTGITD--VSPLSKMSSLYTLNLSYCTGIT--DVSPLSMLIRLETLDLTG 780
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAY 199
CT I + L L +LE+LN+++C IT D+ PLS L+ L++L + C+ +TD ++
Sbjct: 781 CTGI-TDVSPLSKLSRLETLNLRYCTGIT--DVSPLSKLSRLETLNLMYCTGITD--VSP 835
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L +L LNL C + LS + +L L+L+ C D S ++NL SL L
Sbjct: 836 LSKLSRLETLNLMYCTGITD-VSPLSLISNLRTLDLSHCTGITD-VSPLSLMSNLCSLYL 893
Query: 260 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL 317
C GI D + L+ L L+ L+LS G + + LS L+ LE++NL + TGI+D S
Sbjct: 894 SHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITDVS- 949
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKN 373
L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L +F N
Sbjct: 950 -PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSDFIN 1002
Query: 374 LRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
LR+L++ G+TD V + L L L+LS +TD +S L+ L+ LNV
Sbjct: 1003 LRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGITD-----VSPLSTLIRLNVLYLS 1055
Query: 433 ITSAGLRHLKPLKNLRSL 450
G+ + PL L SL
Sbjct: 1056 -GCTGITDVSPLSKLSSL 1072
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 133/409 (32%), Positives = 203/409 (49%), Gaps = 56/409 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGG------------LEHLRGLSNLTSLS-FRRNNAITAQG 123
L D NL++LD +F I+D L ++ G+++++ LS R N + G
Sbjct: 997 LSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAGITDVSPLSTLIRLNVLYLSG 1056
Query: 124 ------MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ + L +L LDL CT I + L L +LE+LN+ +C IT D+ PLS
Sbjct: 1057 CTGITDVSPLSKLSSLRTLDLSHCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLS 1113
Query: 178 GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
++NL++L +S C+ +TD ++ L + L L L C + LS L L L+L+
Sbjct: 1114 LISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD-VPPLSMLIRLEKLDLS 1170
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
C D S+L+ LE+LNL C GI D ++L + NL L LS G + +
Sbjct: 1171 GCTGITD-VSPLSKLSRLETLNLMYCTGITDVSPLSL--MSNLCSLYLSHC-TGITDVSP 1226
Query: 296 LSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LS L LE ++LS TGI+D S L+ LS L++LNL + TG+ ++ L+ L+ L+
Sbjct: 1227 LSMLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLE 1280
Query: 355 ----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
++ ITD L NL SL + G+TD V + LS L LNL +
Sbjct: 1281 TLNLMYCTGITDVSPLSL--MSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMYCTGI 1336
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
TD + +S L+ L +LN+ + G+ + PL NLR+L L C
Sbjct: 1337 TD--VSPLSKLSRLETLNL----MYCTGITDVSPLSLISNLRTLDLSHC 1379
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 169/326 (51%), Gaps = 32/326 (9%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
L LDL CT I + L L L +L++ C ITD + PLS L++L++ +S C+
Sbjct: 426 LRTLDLSHCTGI-TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTFDLSHCTG 482
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+TD ++ L L L +LNL GC A+ +DSL +L L L L+R ++D L
Sbjct: 483 ITD--VSPLSTLSGLEVLNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVL 540
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL---ESINLS 308
L +L+L C G+ N++ L L LE+ + G + + +S L++L ++NLS
Sbjct: 541 KCLRTLDLSHC----TGITNVSPLSTLSGLEVLNLS-GCADITDISPLSDLNIMHTLNLS 595
Query: 309 F-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGA 365
F TGI+D S L+ LS L++LNL ITD ++ L+ ++ L LDL ITD
Sbjct: 596 FCTGITDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVSP 651
Query: 366 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L NLR+L++ G+TD V + L L L+LS +TD + +S L+ L
Sbjct: 652 LSL--ISNLRTLDLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD--VSPLSKLSRLE 705
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSL 450
+LN+ + G+ + PL L L
Sbjct: 706 TLNL----MYCTGITDVSPLSKLSRL 727
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 216/480 (45%), Gaps = 75/480 (15%)
Query: 21 TEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80
+ SL RDC + CLG V+++ + G S L+ L+ ++TD L + C
Sbjct: 217 SHTSLTVGRDCFIP--CLGV---VSEEVL-----AGVSRLT--LNKVELTDRDLWRIHKC 264
Query: 81 SNLQSLDFNFC-------IQISDGG---------LEHLRGLSNLTSLSFRR-NNAITAQG 123
SNL++L C Q+ G E +RG+S L ++ N +G
Sbjct: 265 SNLKALSIEECTGRICLGTQMPHGNSPTRENCDDTERVRGISCLEEITISNCMNIKEIKG 324
Query: 124 MKAFAGL-----IN----------------LVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ A + IN +++L+ + C I L L +ESL I
Sbjct: 325 LNTLACISRLRFINSNISDDCVANISENKHILELEFQDCANI-TSLRPLANSQLIESLVI 383
Query: 163 KWCNCIT-DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
NCI +S++ L+ L L+ L++S + D+ + L + L L+L C +
Sbjct: 384 S--NCINLESEINVLAALNRLRELRLSRLAINDATLRDLDVSKCLRTLDLSHCTGITD-V 440
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 280
LS L SL L+L+ C D S+L++L + +L C GI D + L+ L L+
Sbjct: 441 SPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLRTFDLSHCTGITD--VSPLSTLSGLEV 497
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L LS +SG+ L L L + LS I+D LR + L L++L+L + T
Sbjct: 498 LNLSGCTGVASGVDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDL-SHCTGITN 556
Query: 341 LAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
++ L++L+GL L+L G A ITD N + +L C G+TD V + LS L
Sbjct: 557 VSPLSTLSGLEVLNLSGCADITDISPLSDLNIMHTLNLSFC-TGITD--VSPLSKLSRLE 613
Query: 400 LLNLSQNCNLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
LNL +TD L LIS L +L++S+ G+ + PL NLR+L L C
Sbjct: 614 TLNLMYCTGITDVSPLSLISNLR---TLDLSH----CTGITDVSPLSLISNLRTLDLSHC 666
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 1360 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPP 1410
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ LI L K DL CT I + L L +LE+LN+ +C IT D+ PLS ++ L++L
Sbjct: 1411 LSMLIRLEKSDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGIT--DVSPLSKVSRLETLN 1467
Query: 187 -ISCSKVTD 194
+ C+ +TD
Sbjct: 1468 LMYCTGITD 1476
>gi|290997297|ref|XP_002681218.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
gi|284094841|gb|EFC48474.1| leucine-rich repeat ribonuclease inhibitor family protein
[Naegleria gruberi]
Length = 342
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 1/218 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ + L LN+ ++ D+G + S + L SLN+ IGDEG ++ + L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++G G +++S + L S+N+ +T I + ++ + L LN+ I G
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I GA ++ K L SL I + D G K I ++ LT LN+
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
S N D+ + IS + L SL++SN+RI G +++
Sbjct: 304 SYNIT-GDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 109/215 (50%), Gaps = 1/215 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI+ N I D K +S + L SL I +++ D G ++ +++LT L++ G
Sbjct: 127 MKQLTSLNIR-GNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDIRG 185
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ +S + L LN+ + +G + S + L LN+ IG EG ++
Sbjct: 186 NRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFIS 245
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L++S+ ++G G + +S + L S+N+++ I D + ++ + L SLN+
Sbjct: 246 EMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISY 305
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
D G ++ + LT LD+ RI D GA Y+
Sbjct: 306 NITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 105/217 (48%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ + L SL I +++ D G Y+ +++LT LN+ + +S + L L++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++ D+G + S + L SLN+ IG EG ++ + L L + +G G +
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+S + L +++S I + ++ + L SLN++ +I D G ++ + LT L++
Sbjct: 244 ISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNI 303
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
D GA ++ K L SL+I + D G K+I
Sbjct: 304 SYNITGDRGAKFISEMKQLTSLDISNNRICDEGAKYI 340
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+T + L L + ++G G +++S + L S+N+ I D + ++ + L SL++
Sbjct: 124 VTEMKQLTSLNIRGNRIGDEGAKYISEMKQLTSLNIRENEIGDEGAKFISEMKQLTSLDI 183
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+I D G ++ + LT L+++ I GA ++ K L L I + G K
Sbjct: 184 RGNRIGDEGAKYISEMKQLTSLNIYYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKF 243
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I ++ LTLL++S N + + + IS + L SLN++ + I G + + +K L SL
Sbjct: 244 ISEMKQLTLLDISNN-EIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLN 302
Query: 452 LESCKVTAN-------DIKRLQSRDLPN 472
+ S +T + ++K+L S D+ N
Sbjct: 303 I-SYNITGDRGAKFISEMKQLTSLDISN 329
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 4/205 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
+I D G +++ + LTSL+ R N I +G K + + L LD+ R RI G +
Sbjct: 139 RIGDEGAKYISEMKQLTSLNIRE-NEIGDEGAKFISEMKQLTSLDI-RGNRIGDEGAKYI 196
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ +L SLNI + I K +S + L L I + + G ++ +++LTLL++
Sbjct: 197 SEMKQLTSLNI-YYTLIGIEGAKFISEMKQLTLLNIYYNLIGIEGAKFISEMKQLTLLDI 255
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ +S + L LN+N ++ D G + S + L SLN+ GD G
Sbjct: 256 SNNEIGIEGAKFISEMKQLTSLNINYNEIGDRGAKFISEMKQLTSLNISYNITGDRGAKF 315
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHL 296
++ + L L++S+ ++ G +++
Sbjct: 316 ISEMKQLTSLDISNNRICDEGAKYI 340
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ G+ + D G ++ + L SL+ + + I G + + + LT L+
Sbjct: 173 SEMKQLTSLDIRGNRIGDEGAKYISEMKQLTSLNIYYTL-IGIEGAKFISEMKQLTLLNI 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L LD+ G + + +L SLNI + N I D
Sbjct: 232 YY-NLIGIEGAKFISEMKQLTLLDISNNEIGIEGAKFISEMKQLTSLNINY-NEIGDRGA 289
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL IS + D G ++ +++LT L++
Sbjct: 290 KFISEMKQLTSLNISYNITGDRGAKFISEMKQLTSLDI 327
>gi|281349609|gb|EFB25193.1| hypothetical protein PANDA_001999 [Ailuropoda melanoleuca]
Length = 398
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 65/377 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTAND 461
L+ L L ++T ++
Sbjct: 381 PCLKVLNLGLWQMTDSE 397
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 396
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 D 242
D
Sbjct: 395 D 395
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|320165727|gb|EFW42626.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 553
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 27/382 (7%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LT+L F NN + + A AGL L L L+R GL L LN
Sbjct: 74 FTGLTALTTL-FLENNQLPSISANALAGLTALQYLSLQRNQLTSISANTFTGLTALTGLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ + N L+GLT +++L + + +T L LT+L+L + +
Sbjct: 133 LDF-NQFASISADTLAGLTTMRTLSLGSNGITSISANAFTSLTALTVLDLSYNELPSISA 191
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
D+L+ L ++ L+L R QL+ F+ LT L L+L + LTGL L+ L
Sbjct: 192 DALTGLTAMRTLSLQRNQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTALQYL 251
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--- 338
L++ ++ +GLT L ++ L++ + + S L GL++L+SL+L IT
Sbjct: 252 SLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNITTIHA 311
Query: 339 ------TGLA---------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
T LA ALT LT L +L L RIT A L L
Sbjct: 312 NAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTALTVL 371
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ L + L++L L+L+ N +T +GLT L L + N++ITS
Sbjct: 372 YLSYNELPSISANALAGLTALQYLSLNNN-QITSIAAAAFAGLTALTHLPLDNNQITSIS 430
Query: 438 LRHLKPLKNLRSLTLESCKVTA 459
L L+ L+L S ++T+
Sbjct: 431 AEAFTGLSALQLLSLNSNQITS 452
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 163/374 (43%), Gaps = 30/374 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LDFN Q + + L GL+ + +LS N IT+ AF L L LDL
Sbjct: 133 LDFN---QFASISADTLAGLTTMRTLSLGSN-GITSISANAFTSLTALTVLDLSYNELPS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L GL + +L+++ N +T +GLT L L +S +++ L GL
Sbjct: 189 ISADALTGLTAMRTLSLQR-NQLTSISANTFTGLTALTGLDLSYNELPSISANALTGLTA 247
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI- 264
L L+L +T ++ + L +L L LN QL + + LT L SL+L I
Sbjct: 248 LQYLSLNNNRITRISANTFTGLTALTTLYLNYNQLPNISANALTGLTALRSLSLTQNNIT 307
Query: 265 --------GDEGLVNL---------------TGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
G L +L TGL L+ L L++ ++ +GLT
Sbjct: 308 TIHANAFAGLTALASLVLVQNQLSSISADALTGLTALQYLSLNNNRITRISANAFTGLTA 367
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + LS+ + S LAGL++L+ L+L+ QIT AA LT LTHL L +IT
Sbjct: 368 LTVLYLSYNELPSISANALAGLTALQYLSLNNNQITSIAAAAFAGLTALTHLPLDNNQIT 427
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
A L+ L + +T L++LT L L+QN N+ + +GLT
Sbjct: 428 SISAEAFTGLSALQLLSLNSNQITSIAANAFTGLNALTSLYLNQN-NIAGISANAFTGLT 486
Query: 422 GLVSLNVSNSRITS 435
L L + ++ T+
Sbjct: 487 KLTQLYLDDNPFTT 500
>gi|403286756|ref|XP_003934642.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Saimiri
boliviensis boliviensis]
Length = 349
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 184/377 (48%), Gaps = 65/377 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 16 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 69
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 70 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 127
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG ++L
Sbjct: 128 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLSLEQ 154
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 155 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 209
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 210 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 268
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 269 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 328
Query: 445 KNLRSLTLESCKVTAND 461
L+ L L ++T ++
Sbjct: 329 PCLKVLNLGLWQMTDSE 345
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 166/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 34 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 93
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +L+
Sbjct: 94 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLSLE 153
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 154 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 190
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 191 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 250
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 251 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 310
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 311 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 344
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 163 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 222
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 223 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 282
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 283 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 342
Query: 242 D 242
D
Sbjct: 343 D 343
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 37 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 95
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 96 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLS 151
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 152 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 210
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 211 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 270
Query: 463 KRL 465
R+
Sbjct: 271 NRM 273
>gi|22748931|ref|NP_689654.1| F-box/LRR-repeat protein 14 [Homo sapiens]
gi|386782025|ref|NP_001247451.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|390467358|ref|XP_003733751.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 2 [Callithrix
jacchus]
gi|402884767|ref|XP_003905846.1| PREDICTED: F-box/LRR-repeat protein 14 [Papio anubis]
gi|441670511|ref|XP_004092204.1| PREDICTED: F-box/LRR-repeat protein 14 [Nomascus leucogenys]
gi|48428083|sp|Q8N1E6.1|FXL14_HUMAN RecName: Full=F-box/LRR-repeat protein 14; AltName: Full=F-box and
leucine-rich repeat protein 14
gi|20381419|gb|AAH28132.1| F-box and leucine-rich repeat protein 14 [Homo sapiens]
gi|119609334|gb|EAW88928.1| F-box and leucine-rich repeat protein 14, isoform CRA_a [Homo
sapiens]
gi|312150528|gb|ADQ31776.1| F-box and leucine-rich repeat protein 14 [synthetic construct]
gi|355563880|gb|EHH20380.1| F-box and leucine-rich repeat protein 14 [Macaca mulatta]
gi|384945426|gb|AFI36318.1| F-box/LRR-repeat protein 14 [Macaca mulatta]
gi|410217776|gb|JAA06107.1| F-box and leucine-rich repeat protein 14 [Pan troglodytes]
Length = 418
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 188/395 (47%), Gaps = 67/395 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L+ L L ++T D ++ D L + R
Sbjct: 381 PCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 46/345 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+G RIT G + L+ L + +TD+ + D S L
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 407
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 394
Query: 242 DDGCEKFSR 250
D EK +R
Sbjct: 395 DS--EKEAR 401
>gi|449019210|dbj|BAM82612.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]
Length = 2325
Score = 95.1 bits (235), Expect = 7e-17, Method: Composition-based stats.
Identities = 101/300 (33%), Positives = 145/300 (48%), Gaps = 50/300 (16%)
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRL-TNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 282
S+ +L L+++ C+L+D + RL LE L+L C I D GL +L L +L+ L+
Sbjct: 2015 SSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELD 2074
Query: 283 LSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L+DT V S+ G L+ L L ++LS+T + + L+ L L+ L LDAR I+D L
Sbjct: 2075 LADTNVTSAVGASLLARLRQLRRLDLSYTAVQSNITKSLSTLEQLEWLGLDARLISDDAL 2134
Query: 342 A-------------------ALTSLT-------------GLTHLDLFGARITDSGAAYL- 368
AL+S T L HLDLFGA ITD G +YL
Sbjct: 2135 QVEENEASPEPVSSRDVAAPALSSATVAVHLHRRIGLPRHLRHLDLFGAHITDRGMSYLV 2194
Query: 369 RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTG----- 422
+ + SLE+C G LTDA ++ I + L L LN+SQN ++D L + L
Sbjct: 2195 QACPYVESLEVCSGALTDAALRLIAQHLPYLRALNISQNMRISDAGLREYARLAQVQQDL 2254
Query: 423 -----LVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESCKVTANDIKRLQS--RDLPNLV 474
L +LN++ + +T GL L P L LR L + C + +QS R P LV
Sbjct: 2255 GQPHLLETLNLAFTAVTWRGLAVLLPTLPYLRLLCVRGCNKDSFSAVSVQSLERMRPGLV 2314
Score = 44.7 bits (104), Expect = 0.10, Method: Composition-based stats.
Identities = 105/405 (25%), Positives = 165/405 (40%), Gaps = 91/405 (22%)
Query: 61 SVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
++DLSG S +TD GLI L L+ + C+ I G+ L R S L LS
Sbjct: 1713 TLDLSGCSHITDRGLIGLAPHLRQLKECILDGCLGIWGPGVRALLRLCSKLERLSLAGCR 1772
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++T + AF GL + V C R G LK L++ C +TD + L
Sbjct: 1773 SLTDE---AFQGLASGVARG--PCQRTSAGRFALK------HLDLSSCIHLTDEGLGAL- 1820
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+ L + + D+ I E T A ++ L + L +
Sbjct: 1821 -VAALSTPEAKAGDSEDTAI--------------ESVATTEASAGLVAPLTTEALLYSSS 1865
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNL--TGLCNLKCLELSDTQVGSSGLR 294
S G LE+L++ C +GD L L +L+ ++LS T++ + L+
Sbjct: 1866 SNSSSSG--------TLETLSVAHCFRLGDRSLRPLLRQHRQSLRVVDLSYTRITGAVLQ 1917
Query: 295 HLSGLTNLESINLSFTG-----------------------------------ISDGSLRK 319
L L L+S++L G ++DG L
Sbjct: 1918 ELGALPQLQSLSLCGCGETLSVESDAATRFGEELALPGKQLVHLDLGKCAQLVTDGFLAA 1977
Query: 320 LAGLSS-LKSLNLDARQITDTGLAALTSLTGLTH-----------LDLFGARITD-SGAA 366
LAGL+S ++ + RQ AA+ L TH L + G R+TD S +
Sbjct: 1978 LAGLASGRRTHHQYNRQQYQQNPAAVERLVHATHGVYSSRDTLRSLSVHGCRLTDRSLSH 2037
Query: 367 YLRNFKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLT 410
Y+R F+ L L++ L TDAG++H++ L SL L+L+ + N+T
Sbjct: 2038 YVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRELDLA-DTNVT 2081
Score = 41.6 bits (96), Expect = 0.80, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
+ S +L S+ + G +TD L H ++ L+ LD + C I+D GLEHL+ L +L
Sbjct: 2013 VYSSRDTLRSLSVHGCRLTDRSLSHYVRLFQGLERLDLSQCRLITDAGLEHLQSLKSLRE 2072
Query: 111 LSFRRNNAITAQG 123
L N +A G
Sbjct: 2073 LDLADTNVTSAVG 2085
>gi|301617436|ref|XP_002938142.1| PREDICTED: f-box/LRR-repeat protein 14-like [Xenopus (Silurana)
tropicalis]
Length = 400
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 173/334 (51%), Gaps = 39/334 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L+SL +S C +VTDS + YLKGL
Sbjct: 86 IQGLPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLD 260
Q +L L GC L L L LNL C+ +SD G + +T +
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAA---- 198
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLR 318
EG + L L C +L+D L+H+S GL L +NLSF G ISD L
Sbjct: 199 ------EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLQGLRVLNLSFCGGISDAGLL 247
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ + L+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 248 HLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYG 306
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 307 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 366
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 367 TRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 142/312 (45%), Gaps = 61/312 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 190 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLQ 228
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEG 213
L LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++
Sbjct: 229 GLRVLNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSF 288
Query: 214 CPVTAACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDE 267
C SL+ + Y L+L C +SDDG + R + L +LN+ C I D+
Sbjct: 289 CDKVGD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDK 346
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
GL + HLS LT ++ T I+ L ++ L LK
Sbjct: 347 GLELIA--------------------EHLSQLTGIDLYGC--TRITKKGLERITQLPCLK 384
Query: 328 SLNLDARQITDT 339
LNL Q+T++
Sbjct: 385 VLNLGLWQMTES 396
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
L ++ESLNL C G+G + + L +L C +++D+ +G ++L GL
Sbjct: 89 LPDIESLNLSGCYNLTDNGLGHAFVQEIGSLRSLNLSLCKQVTDSSLGRIA-QYLKGLQV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|317420071|emb|CBN82107.1| Uncharacterized protein [Dicentrarchus labrax]
Length = 889
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 190/410 (46%), Gaps = 47/410 (11%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDL 64
++++ + N + R L +LE F C LQ L YP ++ + + + ++L + L
Sbjct: 469 ELAELLLNHMSRERLLRPRTLELFFGCPLQKFVLNCYPYSTNELLRQLRA-FTALKHLSL 527
Query: 65 SGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S +TDSGL + LQ L+ C +++D L+H+ GL +L LS + +T G
Sbjct: 528 VNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSCLQHITGLKSLCFLSLDQTK-VTDAG 586
Query: 124 MKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLT 180
M + + L +L L + LV L + +L L+IK D+ L+ L+
Sbjct: 587 MVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQLRLLSIKQTKV---KDVSALARLS 643
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR--- 237
NL++L + + VT+S + +L L+ L+L G PV D AL + L L +
Sbjct: 644 NLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA----DGNQALQIISDLRLTQLTL 699
Query: 238 ----------------------------CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
Q++D G + S +T L+ L+L + + D GL
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK-LAGLSSLK 327
+L GL L+ L L T V S G+ L + L +L+ + L+ T + D +R+ + + L
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LNL +ITD GL L + L ++L G ++ G A L +F N+ S+
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSI 868
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 62/337 (18%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L + S +TDSG++ L KL LNL C +T +C
Sbjct: 503 NCYPYSTNELLRQLRAFTALKHLSLVNSPLITDSGLSIFSSLAKLQYLNLASCSKLTDSC 562
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKF--SRLTNLESLNLDSCGIGDEGLVNL-TGLCN 277
L ++ L SL +L+L++ +++D G + S + L L+L+ + + LV L T +
Sbjct: 563 LQHITGLKSLCFLSLDQTKVTDAGMVLYLQSAPSCLSQLSLNQTAVTEASLVVLPTCVPQ 622
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+ L + T+V + L+ L+NL+++NL TG+++ SL L+ +L SL+L +
Sbjct: 623 LRLLSIKQTKV--KDVSALARLSNLQTLNLDVTGVTESSLEHLSSHPTLSSLSLAGIPVA 680
Query: 338 DTGLA-ALTSLTGLTHLDLFG--------------------------ARITDSGAAYLRN 370
D A + S LT L L G ++TD G + L
Sbjct: 681 DGNQALQIISDLRLTQLTLPGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLST 740
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT--------- 421
L+ L + +TDAG+ ++ L L L L + + +LI+ L
Sbjct: 741 MTRLKKLSLSNTQVTDAGLPSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLAS 800
Query: 422 ----------------GLVSLNVSNSRITSAGLRHLK 442
LV LN+S +RIT GL+ LK
Sbjct: 801 TQVGDTVVRRGVIRCNQLVKLNLSRTRITDHGLKCLK 837
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 33/236 (13%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDL 138
SNLQ+L+ + +++ LEHL L+SLS A G +A + + L +L L
Sbjct: 643 SNLQTLNLD-VTGVTESSLEHLSSHPTLSSLSL--AGIPVADGNQALQIISDLRLTQLTL 699
Query: 139 E-RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
R T GL L L L L++ +TD + LS +T LK L +S ++VTD+G+
Sbjct: 700 PGRHTVTDSGLSFLSRLSLLLELDLTDYTQVTDQGVSQLSTMTRLKKLSLSNTQVTDAGL 759
Query: 198 AYLKGLQKLTLLNLEGCPVTA-------ACLDSLSALG-------------------SLF 231
L+GLQ+L L L+ VT+ CL L LG L
Sbjct: 760 PSLRGLQELQELCLDRTAVTSRGVADLITCLPHLQVLGLASTQVGDTVVRRGVIRCNQLV 819
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
LNL+R +++D G + + +L +NLD G+ G+ NL N+ + S+T+
Sbjct: 820 KLNLSRTRITDHGLKCLKHM-HLAQVNLDGTGVSLIGIANLLSFTNISSIRASNTR 874
>gi|410684076|ref|YP_006060083.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
gi|299068565|emb|CBJ39793.1| leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum CMR15]
Length = 555
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 118/415 (28%), Positives = 185/415 (44%), Gaps = 45/415 (10%)
Query: 25 LEAFRD----CALQDLCL-GQYPGVNDKWMDVIASQGSSLLSVDLS--GSDVTDSGLIHL 77
L+A RD AL+ L L G++ + +A+ +SL ++DLS G +T +G+ HL
Sbjct: 123 LQALRDTEGYAALESLTLEGRFTDED------LATLPASLKALDLSRCGRQITAAGIAHL 176
Query: 78 KDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
+ L L+ N+ I D G L LT+L+ +N I G +A A L
Sbjct: 177 SELP-LAELNVRNNW---IGDEGARLLAAHPTLTTLNVA-SNGIGDAGAQALAANTRLES 231
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LD+ G+ L L++LNI N I D+ L+ T L L SC++++D+
Sbjct: 232 LDISFNEIGSDGVQALADNATLKTLNIS-SNDIGDAGALALAVNTTLTELNTSCNRISDA 290
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR------------------ 237
G L LT L++ A + +++A L L+++R
Sbjct: 291 GAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLT 350
Query: 238 ------CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
C++ G + + T L SL+ GIG EG L LK L L +G +
Sbjct: 351 KLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDA 410
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G + L S+NL ++D LR LA ++L++LN+ +IT G A + + LT
Sbjct: 411 GAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLT 470
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LD+ I D GA L L L IC LT GV + ++L +L++ +N
Sbjct: 471 SLDVSHNGIEDEGALALAANTVLNVLNICYNALTVKGVTALAASTTLAVLDIREN 525
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 144/307 (46%), Gaps = 53/307 (17%)
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSRLTNLESLN 258
+G L L LEG T L +L A SL L+L+RC Q++ G S L L LN
Sbjct: 130 EGYAALESLTLEG-RFTDEDLATLPA--SLKALDLSRCGRQITAAGIAHLSELP-LAELN 185
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ + IGDEG L L L ++ +G +G + L+ T LES+++SF I ++
Sbjct: 186 VRNNWIGDEGARLLAAHPTLTTLNVASNGIGDAGAQALAANTRLESLDISFNEIGSDGVQ 245
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
LA ++LK+LN+ + I D G AL T LT L+ RI+D+GA L N +L SL+
Sbjct: 246 ALADNATLKTLNISSNDIGDAGALALAVNTTLTELNTSCNRISDAGAQALANSDSLTSLD 305
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------------------CNLTDKTLE 415
I G DAGV+ I + L L++S+N C + +
Sbjct: 306 ISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQ 365
Query: 416 LISGLTGLVSLNVSNSRITSAGL----RH--LKPL---KN---------------LRSLT 451
++ T LVSL+ ++ I + G RH LK L KN LRSL
Sbjct: 366 ALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLN 425
Query: 452 LESCKVT 458
L+ CKVT
Sbjct: 426 LKGCKVT 432
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 149/320 (46%), Gaps = 5/320 (1%)
Query: 133 LVKLDLERCTR--IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
L LDL RC R G+ +L L L LN++ N I D + L+ L +L ++ +
Sbjct: 156 LKALDLSRCGRQITAAGIAHLSEL-PLAELNVR-NNWIGDEGARLLAAHPTLTTLNVASN 213
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+ D+G L +L L++ + + + +L+ +L LN++ + D G +
Sbjct: 214 GIGDAGAQALAANTRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAV 273
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
T L LN I D G L +L L++SD G +G++ ++ T L +++S
Sbjct: 274 NTTLTELNTSCNRISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRN 333
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+S+ + +A ++L L + +I G AL + T L LD I GA L
Sbjct: 334 RLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALAR 393
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ L + + DAG D ++L LNL + C +TD L +++ L +LNVS+
Sbjct: 394 HATLKQLNLEKNPIGDAGAVAFADNATLRSLNL-KGCKVTDSGLRVLATNATLRTLNVSD 452
Query: 431 SRITSAGLRHLKPLKNLRSL 450
+RIT+ G + L SL
Sbjct: 453 NRITAEGAKATAANSTLTSL 472
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 159/356 (44%), Gaps = 33/356 (9%)
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK- 191
VKL + + L + +G LESL ++ TD D+ L +LK+L +S C +
Sbjct: 113 VKLTVRSSDELQA-LRDTEGYAALESLTLE--GRFTDEDLATLPA--SLKALDLSRCGRQ 167
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+T +GIA+L L L LN+ + L+A +L LN+ + D G + +
Sbjct: 168 ITAAGIAHLSEL-PLAELNVRNNWIGDEGARLLAAHPTLTTLNVASNGIGDAGAQALAAN 226
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
T LESL++ IG +G+ L LK L +S +G +G L+ T L +N S
Sbjct: 227 TRLESLDISFNEIGSDGVQALADNATLKTLNISSNDIGDAGALALAVNTTLTELNTSCNR 286
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG------- 364
ISD + LA SL SL++ D G+ A+ + T L LD+ R++++G
Sbjct: 287 ISDAGAQALANSDSLTSLDISDNGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAAN 346
Query: 365 -----------------AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
A L L SL+ G+ G + + ++L LNL +N
Sbjct: 347 TTLTKLCIADCEIGTAGAQALAANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNP 406
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ D + L SLN+ ++T +GLR L LR+L + ++TA K
Sbjct: 407 -IGDAGAVAFADNATLRSLNLKGCKVTDSGLRVLATNATLRTLNVSDNRITAEGAK 461
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 26/297 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S +D+ D+G + L + L L+ + C +ISD G + L +LTSL +
Sbjct: 251 ATLKTLNISSNDIGDAGALALAVNTTLTELNTS-CNRISDAGAQALANSDSLTSLDIS-D 308
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC----------- 165
N G++A A L +LD+ R G++ + L L I C
Sbjct: 309 NGFGDAGVQAIAANTRLRRLDISRNRLSEAGVLAVAANTTLTKLCIADCEIGTAGAQALA 368
Query: 166 ------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
N I + L+ LK L + + + D+G L LNL+G
Sbjct: 369 ANTRLVSLDAGHNGIGTEGAQALARHATLKQLNLEKNPIGDAGAVAFADNATLRSLNLKG 428
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
C VT + L L+ +L LN++ +++ +G + + + L SL++ GI DEG + L
Sbjct: 429 CKVTDSGLRVLATNATLRTLNVSDNRITAEGAKATAANSTLTSLDVSHNGIEDEGALALA 488
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSL 329
L L + + G+ L+ T L +++ G S R L A + LK+L
Sbjct: 489 ANTVLNVLNICYNALTVKGVTALAASTTLAVLDIRENGYSATIERALQAAVPQLKAL 545
>gi|299066813|emb|CBJ38007.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CMR15]
Length = 457
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 177/373 (47%), Gaps = 9/373 (2%)
Query: 81 SNLQSLDFNFCI-QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
++L+ LD + C I+ G+ HL L L L+ R N I A+G + A L L++
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHLSRLP-LVRLNVR-NKRIGAKGARLLANHPTLTSLNVS 120
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L G M+L +LN+ N + + K L+ L+SL +S +++ D G
Sbjct: 121 NNRIGPEGAQALAGNMRLTTLNVS-GNRLGVEEAKALAANQTLRSLDVSDNRIGDEGARV 179
Query: 200 LKGLQKLTLL--NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L +LT L N G V A +L+A +L L + + D G + L +L
Sbjct: 180 LAACTQLTTLDANRNGIGVDGAT--ALAACPTLRSLGIGGNAIGDAGVLALAANARLTTL 237
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
N++S G+G G+ L L L L +G++G L+ T L +++L+ I
Sbjct: 238 NVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGAEGA 297
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
+ LA + L +L+L +I DTG+ AL + L L + + D A L + L +L
Sbjct: 298 QALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTLTTL 357
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ G G+ D G K + +LT L++S N ++ + ++ LV L++ ++R+ AG
Sbjct: 358 DLSGNGIEDQGAKALAANPTLTTLDVSSN-DIKNAGARALAANARLVWLDLRHNRMEEAG 416
Query: 438 LRHLKPLKNLRSL 450
R L + L SL
Sbjct: 417 TRALLANRTLSSL 429
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 13/309 (4%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGC 214
LE L + TD D++ L +LK L +S + +T +G+A+L L L LN+
Sbjct: 44 LEKLTL--VGTFTDDDLRGLPA--SLKELDLSQCRGPITAAGMAHLSRL-PLVRLNVRNK 98
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ A L+ +L LN++ ++ +G + + L +LN+ +G E L
Sbjct: 99 RIGAKGARLLANHPTLTSLNVSNNRIGPEGAQALAGNMRLTTLNVSGNRLGVEEAKALAA 158
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ L++SD ++G G R L+ T L +++ + GI LA +L+SL +
Sbjct: 159 NQTLRSLDVSDNRIGDEGARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGN 218
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I D G+ AL + LT L++ + G L K L L + G G+ +AG +
Sbjct: 219 AIGDAGVLALAANARLTTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAA 278
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ LT L+L++N + + + ++ T L +L++ ++I G+R L L SLT
Sbjct: 279 STRLTTLHLARN-KIGAEGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLT--- 334
Query: 455 CKVTANDIK 463
V ND+K
Sbjct: 335 --VRRNDLK 341
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 145/329 (44%), Gaps = 38/329 (11%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNF-CIQISDGGLEHLRGLSNLTSLSF 113
+SL +DLS +T +G+ HL S L + N +I G L LTSL+
Sbjct: 63 ASLKELDLSQCRGPITAAGMAHL---SRLPLVRLNVRNKRIGAKGARLLANHPTLTSLNV 119
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK---LESLNIKWCNCITD 170
NN I +G +A AG + L L++ R+ G+ K L L SL++ N I D
Sbjct: 120 S-NNRIGPEGAQALAGNMRLTTLNVS-GNRL--GVEEAKALAANQTLRSLDVS-DNRIGD 174
Query: 171 SDMKPLSGLTNL------------------------KSLQISCSKVTDSGIAYLKGLQKL 206
+ L+ T L +SL I + + D+G+ L +L
Sbjct: 175 EGARVLAACTQLTTLDANRNGIGVDGATALAACPTLRSLGIGGNAIGDAGVLALAANARL 234
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T LN+E V A + +L+A +L +L L+ + + G + T L +L+L IG
Sbjct: 235 TTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLARNKIGA 294
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
EG L L L+L ++G +G+R L+ L S+ + + D S LA +L
Sbjct: 295 EGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILAASRTL 354
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDL 355
+L+L I D G AL + LT LD+
Sbjct: 355 TTLDLSGNGIEDQGAKALAANPTLTTLDV 383
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 127/322 (39%), Gaps = 51/322 (15%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+D+S + + D G L C+ L +LD N N
Sbjct: 161 TLRSLDVSDNRIGDEGARVLAACTQLTTLDAN--------------------------RN 194
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G A A L L + GG N I D+ + L+
Sbjct: 195 GIGVDGATALAACPTLRSLGI-------GG------------------NAIGDAGVLALA 229
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L + + V G+ L + LT L L+G + A +L+A L L+L R
Sbjct: 230 ANARLTTLNVESTGVGAVGVGALAASKALTWLRLDGNGIGNAGATALAASTRLTTLHLAR 289
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++ +G + + T L +L+L IGD G+ L L L + + L+
Sbjct: 290 NKIGAEGAQALAANTKLTTLDLGYNKIGDTGVRALAANATLVSLTVRRNDLKDESAVILA 349
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L +++LS GI D + LA +L +L++ + I + G AL + L LDL
Sbjct: 350 ASRTLTTLDLSGNGIEDQGAKALAANPTLTTLDVSSNDIKNAGARALAANARLVWLDLRH 409
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
R+ ++G L + L SL +
Sbjct: 410 NRMEEAGTRALLANRTLSSLGV 431
>gi|148228501|ref|NP_001083845.1| F-box and leucine-rich repeat protein 14 [Xenopus laevis]
gi|50603939|gb|AAH77430.1| Fbl13 protein [Xenopus laevis]
Length = 400
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 174/334 (52%), Gaps = 39/334 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++GL +ESLN+ C +TD+ + + + +L++L +S C +VTDS + YLKGL
Sbjct: 86 IQGLPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIAQYLKGL 145
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLD 260
Q +L L GC L L L LNL C+ +SD G + +T +
Sbjct: 146 Q---VLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAA---- 198
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLR 318
EG ++L L C +L+D L+H+S GL L +NLSF G ISD L
Sbjct: 199 ------EGCLSLEQLTLQDCQKLTDL-----ALKHISRGLQGLRVLNLSFCGGISDAGLL 247
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ + L+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 248 HLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLYG 306
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 307 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 366
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 367 TRITKKGLERITQLPCLKVLNLGLWQMTESEKVR 400
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 53/308 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA L ++L G +++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 130 VTDSSLGRIAQYLKGLQVLELGGCTNITNTGLLLIAWGLHGLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L +L L+ C ++ L ++ +GL L
Sbjct: 190 LAGMTR-----------------SAAEGCLSLEQLTLQDCQKLTDLALKHISRGLQGLRV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ + LS + L+SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 233 LNLSFCGGISDAGLLHLSHMGGLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVN 271
SL+ + Y L+L C +SDDG + R + L +LN+ C I D+GL
Sbjct: 293 GD--QSLAYIAQGLYGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLEL 350
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ HLS LT ++ T I+ L ++ L LK LNL
Sbjct: 351 IA--------------------EHLSQLTGIDLYGC--TRITKKGLERITQLPCLKVLNL 388
Query: 332 DARQITDT 339
Q+T++
Sbjct: 389 GLWQMTES 396
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
L N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 LPNIESLNLSGCYNLTDNGLGHAFVQEIGSLRTLNLSLCKQVTDSSLGRIA-QYLKGLQV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T
Sbjct: 148 LELGGCTNITNTGL----LLIAWGLHGLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLS 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R + LR +L CGG ++DAG+ H+ + L LNL
Sbjct: 204 LEQLTLQDCQKLTDLALKHISRGLQGLRVLNLSFCGG-ISDAGLLHLSHMGGLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLYGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
>gi|290981600|ref|XP_002673518.1| predicted protein [Naegleria gruberi]
gi|284087102|gb|EFC40774.1| predicted protein [Naegleria gruberi]
Length = 399
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 25/326 (7%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C + + ++ L NLK L I S + D YL + L LN C + L
Sbjct: 34 CRSVGVAILENFPYLENLKELIIDGSYIGDENAIYLSKFKCLKRLNACSCNLGPKSLQYF 93
Query: 225 SALGSLFYLNLNRCQ-----------------------LSDDGCEKFSRLTNLESLNLDS 261
S L SL L L + LS D E+ S ++NL LNL+
Sbjct: 94 SNLNSLEELTLPYNKVSGGLYHLKKLKGLKKLDLSKNVLSMDDIEQLSEISNLNHLNLNG 153
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
+G + + ++ L L LEL + + GL ++S +T L + L SLR L
Sbjct: 154 VDLGGKCMEYISKLP-LITLELEASNIDEIGLGNISQITTLSKLKLFGNNFGSESLRHLV 212
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
LS+LK L+L +I D G+ L+ L L +L L I + G ++ +NL LE+
Sbjct: 213 KLSNLKYLSLAYNKIDDEGVEYLSLLQSLEYLSLSYNNIGNDGVQFISKLENLSQLELIR 272
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
+ + GV+ I + +LT LNL +N L L S + L L++ ++I + HL
Sbjct: 273 NRIDERGVQFISKMKNLTKLNLGENPIRNIGALYL-SKMKQLKGLDLDGTKIDDFSIEHL 331
Query: 442 KPLKNLRSLTLESCKVTANDIKRLQS 467
+KNL+ L +E ++ ++ L+
Sbjct: 332 CLMKNLQYLNIERTNLSETKVETLKE 357
>gi|334117579|ref|ZP_08491670.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
gi|333460688|gb|EGK89296.1| Adenylate cyclase [Microcoleus vaginatus FGP-2]
Length = 516
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 188/372 (50%), Gaps = 35/372 (9%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
G + L L+NLT L N A G +K A L NL +L+L G + L L
Sbjct: 100 GDITPLASLTNLTVLDLGFN----ALGDIKPLASLTNLTRLNL--FGNQIGDIKPLASLT 153
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL L + N I D+KPL+ LTNL L +S ++V D I L L LT L+L+G
Sbjct: 154 KLTELTLN-NNKI--GDIKPLASLTNLTDLVLSSNQVGD--IKPLASLTNLTRLDLDGNV 208
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ + L++L +L L+L+ + D + + LTNL SL+LD IGD + L L
Sbjct: 209 I--GDIKPLASLTNLTRLDLDGNVIGD--IKPLASLTNLSSLDLDDNQIGD--IKPLASL 262
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL L+L +G ++ L+ LTNL ++L I G ++ LA L++L L L + Q
Sbjct: 263 TNLMGLDLRRIVIGD--IKPLASLTNLTDLSLDDNQI--GDIKPLASLTNLTRLVLSSNQ 318
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D + L SLT L+ LDL G I D L + NL SL++ + D +K + L
Sbjct: 319 IRD--IKPLASLTNLSSLDLSGNVIGD--IKPLASLTNLSSLDLNNNKIGD--IKPLASL 372
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ LT L LS N + D ++ ++ LT L SL + + I ++ L L NL SL L+
Sbjct: 373 TKLTELTLSGNV-IGD--IKPLASLTNLSSLVLFGNVI--GDIKPLASLTNLSSLVLDGN 427
Query: 456 KVTANDIKRLQS 467
+ DIK L S
Sbjct: 428 VI--GDIKALAS 437
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 94/199 (47%), Gaps = 20/199 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI D ++ L L+NL+SL N +K A L NL LDL +I G + L
Sbjct: 318 QIRD--IKPLASLTNLSSLDLSGN---VIGDIKPLASLTNLSSLDLNN-NKI-GDIKPLA 370
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L KL L + N I D+KPL+ LTNL SL + + + D I L L L+ L L+
Sbjct: 371 SLTKLTELTLS-GNVI--GDIKPLASLTNLSSLVLFGNVIGD--IKPLASLTNLSSLVLD 425
Query: 213 GCPV-TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G + L SL+ L LF L+ + D + + LTNL SL+L IGD +
Sbjct: 426 GNVIGDIKALASLTNLAGLF---LSSNVIGD--IKPLASLTNLSSLDLSDNHIGD--IKP 478
Query: 272 LTGLCNLKCLELSDTQVGS 290
L L NL L LS +
Sbjct: 479 LASLTNLIELHLSGNPIAP 497
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+DLSG+ + D + L +NL SLD N G ++ L L+ LT L+ N
Sbjct: 329 TNLSSLDLSGNVIGD--IKPLASLTNLSSLDLN---NNKIGDIKPLASLTKLTELTLSGN 383
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL--------NIKWCNCI 168
+K A L NL L L + G + L L L SL +IK +
Sbjct: 384 ---VIGDIKPLASLTNLSSLVL--FGNVIGDIKPLASLTNLSSLVLDGNVIGDIKALASL 438
Query: 169 TD-----------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
T+ D+KPL+ LTNL SL +S + + D I L L L L+L G P+
Sbjct: 439 TNLAGLFLSSNVIGDIKPLASLTNLSSLDLSDNHIGD--IKPLASLTNLIELHLSGNPIA 496
Query: 218 A 218
Sbjct: 497 P 497
>gi|254417119|ref|ZP_05030865.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176097|gb|EDX71115.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 414
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 163/291 (56%), Gaps = 29/291 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D++PLSGLTNL++L + + ++D ++ L L L ++L +T ++ LS L +L
Sbjct: 86 TDIRPLSGLTNLRTLYLGSNLISD--VSPLVELTNLKKVDLSHNQITN--VNPLSGLTNL 141
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+L+L+R Q+++ S LTNLE L+L I + + L+GL NL+ L LS Q+
Sbjct: 142 EWLDLSRNQITN--VNPLSELTNLEWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQI-- 195
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ R +S L NL+ I L+ I+D + LA L++L+ ++L+ QI T + L LT L
Sbjct: 196 TNFRIISALINLKDIALNNNQITD--IYPLAELTNLRRISLNNNQI--TTVRPLVQLTNL 251
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L + +ITD L NLR L + +TD ++ + L++LT L LS N +T
Sbjct: 252 ESLYIGNNQITDIRP--LSQLTNLRQLALNHNQITD--IRPLSQLTNLTGLALSHN-QIT 306
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT---LESCKVT 458
D + +S LT L ++++ ++IT ++ PL NL +LT L S +VT
Sbjct: 307 D--VRPLSQLTNLEWIHLNYNQIT-----NITPLVNLNNLTGLDLHSNQVT 350
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 31/292 (10%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PL LTNLK + +S +++T+ + L GL L L+L +T ++ LS L +L
Sbjct: 108 SDVSPLVELTNLKKVDLSHNQITN--VNPLSGLTNLEWLDLSRNQITN--VNPLSELTNL 163
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+L+L Q+++ S LTNLE LNL I + ++ + L NLK + L++ Q+
Sbjct: 164 EWLDLGHNQITN--ISPLSGLTNLEFLNLSHNQITNFRII--SALINLKDIALNNNQI-- 217
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ + L+ LTNL I+L+ I+ ++R L L++L+SL + QITD + L+ LT L
Sbjct: 218 TDIYPLAELTNLRRISLNNNQIT--TVRPLVQLTNLESLYIGNNQITD--IRPLSQLTNL 273
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L +ITD L NL L + +TD V+ + L++L ++L+ N
Sbjct: 274 RQLALNHNQITDIRP--LSQLTNLTGLALSHNQITD--VRPLSQLTNLEWIHLNYNQ--- 326
Query: 411 DKTLELISGLTGLVSL-NVSNSRITSAGLRHLKP---LKNLRSLTLESCKVT 458
I+ +T LV+L N++ + S + ++ P LKNL+ + L ++T
Sbjct: 327 ------ITNITPLVNLNNLTGLDLHSNQVTNVTPLVQLKNLKWIDLRFNQIT 372
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 145/300 (48%), Gaps = 65/300 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ L + +NL+ LD QI++ + L GL+NL L+ N
Sbjct: 139 TNLEWLDLSRNQITNVN--PLSELTNLEWLDLGHN-QITN--ISPLSGLTNLEFLNLSHN 193
Query: 117 NAITAQGMKAFAGLINL--VKLDLERCTRIH--GGLVNLK----------------GLMK 156
IT + + LINL + L+ + T I+ L NL+ L
Sbjct: 194 -QIT--NFRIISALINLKDIALNNNQITDIYPLAELTNLRRISLNNNQITTVRPLVQLTN 250
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL I N ITD ++PLS LTNL+ L ++ +++TD ++ L +LT NL G
Sbjct: 251 LESLYIG-NNQITD--IRPLSQLTNLRQLALNHNQITD-----IRPLSQLT--NLTG--- 297
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
L L+ Q++D S+LTNLE ++L+ I + + L L
Sbjct: 298 ----------------LALSHNQITD--VRPLSQLTNLEWIHLNYNQITN--ITPLVNLN 337
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL L+L QV + + L L NL+ I+L F I+D S L+GL++L L L+ I
Sbjct: 338 NLTGLDLHSNQV--TNVTPLVQLKNLKWIDLRFNQITDIS--SLSGLTNLMRLYLEGNPI 393
>gi|13905232|gb|AAH06913.1| Fbx14l protein, partial [Mus musculus]
Length = 327
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 39/334 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLD 260
+ +L L GC L L L LNL C+ LSD G + +T +
Sbjct: 73 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---- 125
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLR 318
EG + L L C +L+D L+H+S GLT L +NLSF G ISD L
Sbjct: 126 ------EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLL 174
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 175 HLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDG 233
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 234 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 293
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+RIT GL + L L+ L L ++T ++ R
Sbjct: 294 TRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 327
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 13 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 72
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 73 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 132
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 133 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 169
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 170 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 229
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 230 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 289
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 290 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 323
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 142 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 201
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 202 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 261
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 262 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 321
Query: 242 D 242
D
Sbjct: 322 D 322
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 16 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 74
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 75 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 130
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 131 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 189
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 190 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 249
Query: 463 KRL 465
R+
Sbjct: 250 NRM 252
>gi|302753328|ref|XP_002960088.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
gi|300171027|gb|EFJ37627.1| hypothetical protein SELMODRAFT_437235 [Selaginella moellendorffii]
Length = 657
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 218/457 (47%), Gaps = 53/457 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLK-GLMKLESL 160
+ S R +L+KLD+ RC+ + GL L + LE L
Sbjct: 250 KR-------SCR-----------------SLLKLDVSRCSNVSDAGLAALATSHLSLEQL 285
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C+ ITD + +L+S+ + ++ +G+ ++ +G ++L L+L C VT
Sbjct: 286 TLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTD 345
Query: 219 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNL-T 273
+ +++ +L LNL C +L+D + S+ LESL ++SC I ++GL L
Sbjct: 346 RGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCSLITEDGLCGLGE 405
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL-AGLSSLKSLNL 331
G L+ L+ ++ + +GL+++S T L S+ L F + I+D + + A +L+ L+
Sbjct: 406 GCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDF 465
Query: 332 -DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
++ I D G+AA+ S L LDL + ++ITD L + L+ LE+ G L +
Sbjct: 466 YRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLELRGCVLVSST 525
Query: 389 -----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
K L+ + + SQ N L GL +N+S I+ AGL L
Sbjct: 526 GLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PGLRMMNISYCPISKAGLLSLPR 583
Query: 444 LKNLRSLTLES-------CKVTA-NDIKRLQSRDLPN 472
L L+S+ L C VT + K L++ LP+
Sbjct: 584 LSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 217/449 (48%), Gaps = 39/449 (8%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVK-LDLERC---TRIHGGLVNLKGLMKLESLNIKWCNCI 168
++IT G+ A ++K L L+ C T I LV + +L +L++ + +
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKLLTLKGCLGITDIGIALVAVN-CKQLRTLDLSYTE-V 216
Query: 169 TDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLS 225
TD + ++ L +L+ L +SC+ V D G+ LK + L L++ C V+ A L +L+
Sbjct: 217 TDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAALA 276
Query: 226 ALG-SLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLE 282
SL L L+ C ++DD F + +L+S+ LD C I GL + C LK L
Sbjct: 277 TSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELS 336
Query: 283 LSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA----GLSSLKSLNLDARQ 335
LS + V G+ ++ G T L +NL+ ++D SL +++ GL SLK +
Sbjct: 337 LSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCSL-- 394
Query: 336 ITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 392
IT+ GL L L LD ++D+G Y+ LRSL++ C +TD GV HI
Sbjct: 395 ITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFC-STITDKGVAHI 453
Query: 393 -KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 449
+L L+ ++ + D + I SG L L++S S+IT L+ L L+ L+
Sbjct: 454 GARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQR 513
Query: 450 LTLESC--------KVTANDIKRLQSRDL 470
L L C V A+ KRL D+
Sbjct: 514 LELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 4/163 (2%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSLD 87
R C L++L + G+ D + IAS L +DLS S +TD L L LQ L+
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRLE 515
Query: 88 FNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIH 145
C+ +S GL + G LT + +R + I G+ A + L +++ C
Sbjct: 516 LRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFCPGLRMMNISYCPISK 575
Query: 146 GGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQI 187
GL++L L L+S+ + N D + L +LK++++
Sbjct: 576 AGLLSLPRLSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKL 618
>gi|395845618|ref|XP_003795524.1| PREDICTED: F-box/LRR-repeat protein 14 isoform 3 [Otolemur
garnettii]
Length = 387
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 177/366 (48%), Gaps = 65/366 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 262 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 320
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 321 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
Query: 445 KNLRSL 450
L+ L
Sbjct: 381 PCLKRL 386
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 160/324 (49%), Gaps = 46/324 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 242
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 243 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 302
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362
Query: 355 LFG-ARITDSGAAYLRNFKNLRSL 377
L+G RIT G + L+ L
Sbjct: 363 LYGCTRITKRGLERITQLPCLKRL 386
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 262
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322
Query: 463 KRL 465
R+
Sbjct: 323 NRM 325
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 215 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 274
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 275 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 334
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSAL 227
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L
Sbjct: 335 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 380
>gi|359464005|ref|ZP_09252568.1| internalin A protein [Acaryochloris sp. CCMEE 5410]
Length = 624
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 151/539 (28%), Positives = 242/539 (44%), Gaps = 114/539 (21%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTATS-- 112
Query: 76 HLKDCSNLQSL--------DFNFCI-------------QISDGGLEHLRGLSNLTSLSFR 114
+L+ +NL ++ D++F QI+D + ++ L LTSL
Sbjct: 113 YLQQATNLTTVYLKTTHISDYSFLSDLKNLTHLDLSNNQIAD--ISFIQDLKQLTSLGLA 170
Query: 115 RNNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKL 157
N + G+K ++ L+N +L L R GL L+ L L
Sbjct: 171 ANKIVDISGLKDLTTLNSLNLRSNAIDDYSVLLNFKELSQLTVSVREATGLAFLQDLRGL 230
Query: 158 ESLNIKWCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGI 197
L++ + + I+D SD+ LS L L L +S +K++D +
Sbjct: 231 TYLDLSYNHWISDISVLRHLPKLTHLDLGSNQISDIAVLSDLPQLTHLSLSANKISD--L 288
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
+ L+ LQ L L++ + + L L L L+++ +SD LT L L
Sbjct: 289 SVLQTLQGLESLDISANEIADIAI--LQNLQGLTQLDISSNDVSD--ISALQDLTTLTQL 344
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS- 316
N+ S + D + L GL L L++SD Q+ S + L GL L S+NLS+ +SD S
Sbjct: 345 NVSSNEVIDYSV--LQGLTELTNLDVSDNQL--SEISDLQGLHALTSLNLSYNQLSDISV 400
Query: 317 ---LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L++LA L+ L +LNL QITD L+ L L GLT LDL
Sbjct: 401 LQDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSTLQGLKGLTSLDLHS 458
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+I D A L++ K L L + L+D + +++L L LNLS N ++D + +
Sbjct: 459 NQIRDISA--LQDLKGLYRLNVSDNQLSD--ISALRNLKGLFSLNLSIN-QISD--IAAL 511
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
LT L SLN S++R++ + L+ L L SL L + ++ DI LQ ++P L S
Sbjct: 512 QDLTRLTSLNASHNRLSDISV--LQGLTRLNSLDLGANQIA--DISVLQ--NIPGLFSL 564
>gi|158336627|ref|YP_001517801.1| internalin A protein [Acaryochloris marina MBIC11017]
gi|158306868|gb|ABW28485.1| internalin A protein [Acaryochloris marina MBIC11017]
Length = 627
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 241/539 (44%), Gaps = 114/539 (21%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWM-DVIASQGSSLLS------VDLSGSDVTDSGLI 75
+SL+ L D + QYP ++ ++ D+++ + S + LSG DVT + +
Sbjct: 55 LSLQGVDGHELVDASIEQYPHLSALYLFDIVSPEIVPFASLPGLSTIALSGQDVTAASYL 114
Query: 76 H--------------------LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
L D NL LD + QI+D L ++ L LTSL
Sbjct: 115 QPTTNLTTVYLKTTNISDYSFLSDLKNLTHLDLSNN-QIAD--LSFIQDLKQLTSLGLAS 171
Query: 116 NNAITAQGMK----------------AFAGLINLVKL-DLERCTRIHGGLVNLKGLMKLE 158
N + G+K ++ L+NL +L L R L L+ L L
Sbjct: 172 NKIVDISGLKDLTKLNTLNLRSNAIDDYSVLLNLKELRQLTVSVREATDLAFLQDLKDLT 231
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN-------- 210
L++ + + I SD+ L L L L + +++ S IA L LQ+LT L+
Sbjct: 232 HLDLSYNHWI--SDISVLRNLPKLTHLDLGSNQI--SNIAVLLDLQQLTHLSLSSNQISD 287
Query: 211 ---------LEGCPVTA---ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
LE V+A A + L L L +L+++ ++SD LT L LN
Sbjct: 288 VSVLQTLQGLERLDVSANEIADIAILQNLQGLTHLDISSNEVSD--ISVLQDLTTLTQLN 345
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-- 316
+ S I D + L GL L L++SD Q+ S + L GL +L S+NLS+ +SD S
Sbjct: 346 VSSNEIIDYSV--LQGLTQLTSLDVSDNQM--SEISDLQGLHSLTSLNLSYNQLSDISVL 401
Query: 317 --LRKLAGLS----------------SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L++LA L+ L +LNL QITD L+ L L GL LDL
Sbjct: 402 QDLKQLATLNLSYNPVSDIAVLQNFKDLTTLNLSFTQITD--LSHLQDLKGLISLDLHSN 459
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ITD A L++ + L L + L+D A ++ +K L S LNLS N L L+
Sbjct: 460 QITDISA--LQDLEGLYRLNVSDNQLSDIAALRKLKGLFS---LNLSINQILDIAALQ-- 512
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
LT L SLNVS+++++ + L+ L L SL L + ++ DI LQ ++P L S
Sbjct: 513 -DLTRLTSLNVSHNQLSDISV--LQGLTRLNSLDLGANQIA--DISVLQ--NIPGLFSL 564
>gi|410046126|ref|XP_003952131.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 14 [Pan
troglodytes]
Length = 568
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 188/393 (47%), Gaps = 67/393 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 218 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 271
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 272 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 329
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 330 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 356
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF GISD L L+ + SL+SLNL
Sbjct: 357 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 411
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 412 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 470
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 471 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 530
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L+ L L ++T D ++ D L + R
Sbjct: 531 PCLKVLNLGLWQMT--DSEKEARGDFSPLFTVR 561
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 46/345 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 236 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 295
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 296 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 355
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 356 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 392
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 393 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 452
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 453 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 512
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+G RIT G + L+ L + +TD+ + D S L
Sbjct: 513 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 557
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 365 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 424
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 425 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 484
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 485 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 544
Query: 242 DDGCEKFSR 250
D EK +R
Sbjct: 545 DS--EKEAR 551
>gi|290973418|ref|XP_002669445.1| predicted protein [Naegleria gruberi]
gi|284082993|gb|EFC36701.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 136/275 (49%), Gaps = 4/275 (1%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I + N I K +S + L L I +++ D G + +++LT L++ G ++
Sbjct: 7 LDIGY-NQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQISDE 65
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
S+S + L +L++ + D G + S + L LN+ IGDEG ++ + L
Sbjct: 66 GARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMKQLT 125
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L++ ++ G + +S + L S+N+ I ++ L+ + L SLN+ I D
Sbjct: 126 FLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENLIGDE 185
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G ++ + LT LD++ I GA + + L SL I G+ D G K I ++ LT
Sbjct: 186 GAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNIGENGIGDEGAKLISEMKQLT 245
Query: 400 LLNLSQNCN-LTDKTLELISGLTGLVSLNVSNSRI 433
L++ CN + + + IS + L SLN+SN++I
Sbjct: 246 FLDIY--CNEIGVEGAKYISEMKQLTSLNISNNQI 278
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 1/224 (0%)
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L L++ Q+ +G + S + L LN+ + IGDEG + ++ + L L++ Q+
Sbjct: 3 QLTLLDIGYNQIGVEGAKLISEMKQLTLLNIGTNEIGDEGAIMISEMKQLTFLDIGGNQI 62
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
G R +S + L +++ GI D + ++ + L LN+ QI D G ++ +
Sbjct: 63 SDEGARSISKMRQLTFLDIYGNGIGDKGAKSISEMQQLTLLNIGGNQIGDEGAKLISQMK 122
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LT LD++ I GA + + L SL I + GVK + ++ LT LN+ +N
Sbjct: 123 QLTFLDIYCNEIDVEGAKCISEMQQLTSLNIGSNEIGVEGVKFLSEMQQLTSLNIGENL- 181
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ D+ +LIS + L L++ + I G + + ++ L SL +
Sbjct: 182 IGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQLTSLNI 225
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 5/240 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
++ S+ L +D+ G+ ++D G + L LD + I D G + + + LT
Sbjct: 44 IMISEMKQLTFLDIGGNQISDEGARSISKMRQLTFLDI-YGNGIGDKGAKSISEMQQLTL 102
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCIT 169
L+ N I +G K + + L LD+ C I G + + +L SLNI N I
Sbjct: 103 LNIG-GNQIGDEGAKLISQMKQLTFLDI-YCNEIDVEGAKCISEMQQLTSLNI-GSNEIG 159
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+K LS + L SL I + + D G + +++LT L++ + S+S +
Sbjct: 160 VEGVKFLSEMQQLTSLNIGENLIGDEGAKLISQMKQLTFLDIYCNEIGVEGAKSISEMQQ 219
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L LN+ + D+G + S + L L++ IG EG ++ + L L +S+ Q+G
Sbjct: 220 LTSLNIGENGIGDEGAKLISEMKQLTFLDIYCNEIGVEGAKYISEMKQLTSLNISNNQIG 279
>gi|290983896|ref|XP_002674664.1| predicted protein [Naegleria gruberi]
gi|284088255|gb|EFC41920.1| predicted protein [Naegleria gruberi]
Length = 374
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 144/309 (46%), Gaps = 27/309 (8%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITDS ++P+S L L L +S + + + G+ ++ L++LT L + CL ++ +
Sbjct: 68 ITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNM 127
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L LN+N + + E ++ L SLN+++ IGD+G ++ L +L L ++
Sbjct: 128 RKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNG 187
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ G++ ++ L + +L GIS G G + +
Sbjct: 188 IHEEGVKFINELPQVT--DLDIFGISFGP----------------------GGAKYIGEM 223
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L++ RI D GA YL L L I ++ GVK I++L LT L++S N
Sbjct: 224 KQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFIRELKLLTFLDISIN- 282
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
N+ + + +SGL L L++ + + G RH+ +K L +L + ++ D L
Sbjct: 283 NIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLTNLDINCNSIS--DEGALYF 340
Query: 468 RDLPNLVSF 476
DL L SF
Sbjct: 341 SDLKQLTSF 349
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 6/330 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ +LT L + N + K L L+ LD+ + + + L +L LN+
Sbjct: 32 MKSLTDLRISKINFVEMS--KYLISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVS- 88
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I + + +S L L +L IS ++ + + Y+ ++KLT LN+ G + + +
Sbjct: 89 DNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDI 148
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ L LN+N + D G +L +L SL + GI +EG+ + L + L++
Sbjct: 149 IKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIF 208
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
G G +++ + L +N++ I D L+GL+ L L++ + I+ G+ +
Sbjct: 209 GISFGPGGAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFI 268
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L LT LD+ I G+ Y+ L L I L D G +HI D+ LT NL
Sbjct: 269 RELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDMKWLT--NLD 326
Query: 405 QNCN-LTDKTLELISGLTGLVSLNVSNSRI 433
NCN ++D+ S L L S ++S + I
Sbjct: 327 INCNSISDEGALYFSDLKQLTSFDISGNNI 356
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 118/222 (53%), Gaps = 1/222 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L +L L L++++ ++D E S+L L LN+ IG+ G+++++ L L L +
Sbjct: 52 LISLDQLISLDISKSLITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVI 111
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + G + L++++ + L S+N++ I + + + + L SLN++ I D G
Sbjct: 112 SKNRFGMNCLKYITNMRKLTSLNINGNDIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFH 171
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+ L LT L + I + G ++ + L+I G G K+I ++ LT LN+
Sbjct: 172 VGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPGGAKYIGEMKQLTKLNI 231
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ +C + D+ +SGLT L L++S++ I++ G++ ++ LK
Sbjct: 232 N-SCRIGDEGATYLSGLTKLTKLSISSNSISAIGVKFIRELK 272
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 153/339 (45%), Gaps = 49/339 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSF 113
L+S+D+S S +TDS ++ S L+ L + + +SD G+ H+ L LT+L
Sbjct: 58 LISLDISKSLITDS---IVEPISKLKQLTY---LNVSDNSIGNYGVMHISKLEQLTNLVI 111
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLE---SLNIKWCNC 167
+N GM + N+ KL I+G G + + ++K++ SLN+ N
Sbjct: 112 SKNRF----GMNCLKYITNMRKL---TSLNINGNDIGNIAFEDIIKMKQLTSLNVNNIN- 163
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I D + L +L SL I+ + + + G+ ++ L ++T L++ G
Sbjct: 164 IGDKGAFHVGKLKHLTSLAIAKNGIHEEGVKFINELPQVTDLDIFGISFGPG-------- 215
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G + + L LN++SC IGDEG L+GL L L +S
Sbjct: 216 ----------------GAKYIGEMKQLTKLNINSCRIGDEGATYLSGLTKLTKLSISSNS 259
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + G++ + L L +++S I + ++GL L L++ + D G + +
Sbjct: 260 ISAIGVKFIRELKLLTFLDISINNIGQQGSQYVSGLDKLAHLSIHRNNLGDEGARHIGDM 319
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
LT+LD+ I+D GA Y + K L S +I G + D
Sbjct: 320 KWLTNLDINCNSISDEGALYFSDLKQLTSFDISGNNICD 358
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 275 LCNLKCLELSDTQVGSS----GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L N+K L + T+ G+S L + LT+L ++F +S + L L L SL+
Sbjct: 9 LQNIKTLTM--TRWGNSETYNKLIMMKSLTDLRISKINFVEMS----KYLISLDQLISLD 62
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ ITD+ + ++ L LT+L++ I + G ++ + L +L I +K
Sbjct: 63 ISKSLITDSIVEPISKLKQLTYLNVSDNSIGNYGVMHISKLEQLTNLVISKNRFGMNCLK 122
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+I ++ LT LN++ N ++ + E I + L SLNV+N I G H+ LK+L SL
Sbjct: 123 YITNMRKLTSLNINGN-DIGNIAFEDIIKMKQLTSLNVNNINIGDKGAFHVGKLKHLTSL 181
Query: 451 TLESCKVTANDIKRLQSRDLPNL-------VSFRP 478
+ + +K + +LP + +SF P
Sbjct: 182 AIAKNGIHEEGVKFIN--ELPQVTDLDIFGISFGP 214
>gi|290983152|ref|XP_002674293.1| predicted protein [Naegleria gruberi]
gi|284087882|gb|EFC41549.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS KP ++ + L SL IS +++ D G+ ++
Sbjct: 112 VNVKFSKRLFDSIEKPTFITEMKQLTSLDISNNRIGDEGVKFI----------------- 154
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
S + L L + + D+G + + L SL + IGDEG +++ +
Sbjct: 155 -------SEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGIGGNQIGDEGAKSISEMKQ 207
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++++ Q G G++ + + L S+ + I D + ++ + L SLN+ +I
Sbjct: 208 LTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKSISEMKQLTSLNISENRIG 267
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D G ++ L LT LD+ RI D A ++ K L+SL+I G + D GVK I +++
Sbjct: 268 DEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTR 327
Query: 398 LTLLNL 403
LT L++
Sbjct: 328 LTSLDI 333
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 1/203 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I N I D +K +S + L SL I + + D G+ + +++LT L + G
Sbjct: 133 MKQLTSLDIS-NNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGIGG 191
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ S+S + L L++N Q D+G + + L SL + + IGDEG +++
Sbjct: 192 NQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKSIS 251
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L +S+ ++G G +S L L S+++ + I D + + + LKSL++
Sbjct: 252 EMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDIGG 311
Query: 334 RQITDTGLAALTSLTGLTHLDLF 356
QI D G+ ++ +T LT LD+F
Sbjct: 312 NQIGDEGVKFISEMTRLTSLDIF 334
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 109/205 (53%), Gaps = 1/205 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ + L L+++ ++ D+G + S + L SL + + GIGDEG+ ++ + L L +
Sbjct: 130 ITEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGIYNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
Q+G G + +S + L S++++ D ++ + + L SL + +I D G +
Sbjct: 190 GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTIYNNRIGDEGAKS 249
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ RI D GA ++ K L SL+IC + D K I ++ L L++
Sbjct: 250 ISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSLDI 309
Query: 404 SQNCNLTDKTLELISGLTGLVSLNV 428
N + D+ ++ IS +T L SL++
Sbjct: 310 GGN-QIGDEGVKFISEMTRLTSLDI 333
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 3/206 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L S+D+S + + D G+ + + L SL + I D G++ + + LTSL
Sbjct: 131 TEMKQLTSLDISNNRIGDEGVKFISEMKQLISLGI-YNNGIGDEGVKSIIEMKRLTSLGI 189
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + + L LD+ G+ + + +L SL I + N I D
Sbjct: 190 -GGNQIGDEGAKSISEMKQLTSLDINNNQTGDEGVKFICEMKQLTSLTI-YNNRIGDEGA 247
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL IS +++ D G ++ L++LT L++ + + + L L
Sbjct: 248 KSISEMKQLTSLNISENRIGDEGAIFISELKQLTSLDICYNRIGDKEAKFICEMKQLKSL 307
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNL 259
++ Q+ D+G + S +T L SL++
Sbjct: 308 DIGGNQIGDEGVKFISEMTRLTSLDI 333
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 5/179 (2%)
Query: 34 QDLCLGQYP-GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
Q + LG Y G+ D+ + I + L S+ + G+ + D G + + L SLD N
Sbjct: 159 QLISLGIYNNGIGDEGVKSII-EMKRLTSLGIGGNQIGDEGAKSISEMKQLTSLDINNN- 216
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q D G++ + + LTSL+ NN I +G K+ + + L L++ G + +
Sbjct: 217 QTGDEGVKFICEMKQLTSLTI-YNNRIGDEGAKSISEMKQLTSLNISENRIGDEGAIFIS 275
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L +L SL+I + N I D + K + + LKSL I +++ D G+ ++ + +LT L++
Sbjct: 276 ELKQLTSLDICY-NRIGDKEAKFICEMKQLKSLDIGGNQIGDEGVKFISEMTRLTSLDI 333
>gi|156377140|ref|XP_001630715.1| predicted protein [Nematostella vectensis]
gi|156217741|gb|EDO38652.1| predicted protein [Nematostella vectensis]
Length = 398
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 47/323 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLD 137
S ++SL+ C ++D + H ++ L LT L IT + A + NL LD
Sbjct: 94 SCIESLNLKGCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLD 153
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT---------NLKSLQ 186
L C I G L+ GL+KL+ LN++ C I+D+ + LSGL+ NL +L
Sbjct: 154 LAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLC 213
Query: 187 IS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ C K+TD+ + ++ KGL L LNL C C +S G
Sbjct: 214 LQDCQKITDNALRHISKGLINLECLNLSFC-----------------------CGISGAG 250
Query: 245 CEKFSRLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDT-QVGSSGLRHL-SGLT 300
+ L +L LNL SC G+ +EG+ +L G NL CL++S ++G L H+ SGL
Sbjct: 251 LAHLATLRSLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLN 310
Query: 301 NLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG 357
+L+++ L+ + I+D L K++ L L+ LN+ QITD +A++ S L +T++DL+G
Sbjct: 311 HLQNLGLNSSHITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYG 370
Query: 358 -ARITDSGAAYLRNFKNLRSLEI 379
++T G L + LR L +
Sbjct: 371 CTKVTKCGLEKLMHLPKLRVLNL 393
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD+ L H+ K NL+ L+ +FC IS GL HL L +L L+ R + +G+
Sbjct: 220 ITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSLRELNLRSCEGVNNEGIAHL 279
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLK 183
A G +NLV LD+ C +I +N GL L++L + + ITD + +S L L+
Sbjct: 280 AVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLNSSH-ITDEGLCKISRHLRELR 338
Query: 184 SLQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQ 239
L I C+++TD IA + L +T ++L GC C L+ L L L LNL Q
Sbjct: 339 VLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEKLMHLPKLRVLNLGLWQ 397
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 28/194 (14%)
Query: 277 NLK-CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG-LSSLKSLNLDA 333
NLK C ++DT +G + +++L LT L+ LS I+D SL K+A L +L+ L+L
Sbjct: 100 NLKGCYNVTDTSIGHAFVKYLPTLTVLD---LSLCKQITDSSLGKIADFLKNLEFLDLAG 156
Query: 334 R-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
IT+TGL + L L HL+L R I+D+G +L N +
Sbjct: 157 CCNITNTGLLLCSWGLVKLKHLNLRSCRHISDAGILHLSGLSN------------NINAH 204
Query: 391 HIKDLSSLTLLNLSQNCN-LTDKTLELIS-GLTGLVSLNVSNS-RITSAGLRHLKPLKNL 447
K+L++L L Q+C +TD L IS GL L LN+S I+ AGL HL L++L
Sbjct: 205 GNKNLTTLCL----QDCQKITDNALRHISKGLINLECLNLSFCCGISGAGLAHLATLRSL 260
Query: 448 RSLTLESCKVTAND 461
R L L SC+ N+
Sbjct: 261 RELNLRSCEGVNNE 274
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 27/181 (14%)
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDS--GA 365
F ++ +RK+ LS KSL+ + SL+ + L+L G +TD+ G
Sbjct: 66 FPSLAKRGIRKIRILSLKKSLSF-----------VVQSLSCIESLNLKGCYNVTDTSIGH 114
Query: 366 AYLRNFKNLRSLEIC-GGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTG 422
A+++ L L++ +TD+ + I D L +L L+L+ CN+T+ L L S GL
Sbjct: 115 AFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLAGCCNITNTGLLLCSWGLVK 174
Query: 423 LVSLNVSNSR-ITSAGLRHLKPL---------KNLRSLTLESCKVTANDIKRLQSRDLPN 472
L LN+ + R I+ AG+ HL L KNL +L L+ C+ ++ R S+ L N
Sbjct: 175 LKHLNLRSCRHISDAGILHLSGLSNNINAHGNKNLTTLCLQDCQKITDNALRHISKGLIN 234
Query: 473 L 473
L
Sbjct: 235 L 235
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKD-CSNLQSLDFN 89
+L++L L GVN++ + +A G +L+ +D+S D + D L H+ ++LQ+L N
Sbjct: 259 SLRELNLRSCEGVNNEGIAHLAVGGLNLVCLDVSFCDKIGDVALNHISSGLNHLQNLGLN 318
Query: 90 FCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI-HG 146
I+D GL + R L L L+ + IT Q + + A LI + +DL CT++
Sbjct: 319 SS-HITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKC 377
Query: 147 GLVNLKGLMKLESLNI 162
GL L L KL LN+
Sbjct: 378 GLEKLMHLPKLRVLNL 393
>gi|397499401|ref|XP_003820442.1| PREDICTED: F-box/LRR-repeat protein 14 [Pan paniscus]
Length = 561
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 174/331 (52%), Gaps = 39/331 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 204 QKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLD 260
+ +L L GC L L L LNL C+ LSD G + +T +
Sbjct: 306 E---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---- 358
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLR 318
EG + L L C +L+D L+H+S GLT L +NLSF GISD L
Sbjct: 359 ------EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLL 407
Query: 319 KLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKN 373
L+ + SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ +
Sbjct: 408 HLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDG 466
Query: 374 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN- 430
L+SL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++
Sbjct: 467 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 526
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+RIT GL + L L+ L L ++T ++
Sbjct: 527 TRITKRGLERITQLPCLKVLNLGLWQMTDSE 557
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 165/329 (50%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 228 RGIRRVQILSLRRSLSYVIQGM------ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 281
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 282 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 339
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSR-LTNLESLNLDSC- 262
+ A + +A G L L L CQ L+D + SR LT L LNL C
Sbjct: 340 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 399
Query: 263 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 319
GI D GL++L+ + +L+ L L S + +G+ HL+ G L +++SF + D SL
Sbjct: 400 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 459
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL LKSL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 460 IAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 519
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 520 GIDLYGCTRITKRGLERITQLPCLKVLNL 548
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 165/334 (49%), Gaps = 46/334 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 246 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 305
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 306 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 365
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 366 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GIS 402
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 403 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 462
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 463 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 522
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+G RIT G + L+ L + +TD+
Sbjct: 523 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 556
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 375 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 434
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 435 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 494
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 495 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 554
Query: 242 D 242
D
Sbjct: 555 D 555
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 249 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 307
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 308 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 363
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 364 LEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 422
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 423 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 482
Query: 463 KRL 465
R+
Sbjct: 483 NRM 485
>gi|291000432|ref|XP_002682783.1| predicted protein [Naegleria gruberi]
gi|284096411|gb|EFC50039.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 6/202 (2%)
Query: 211 LEGCPVTAACLDSL------SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
+E + LDS+ S + L L ++ + D+G + S + L SL++ I
Sbjct: 95 IENVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQI 154
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
GDEG +++ + L L++S Q+G G + + + L S+++ F I + + ++G++
Sbjct: 155 GDEGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMN 214
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L SL++ +I D G +++ + LT L+++ RI D GA + + K L+SL I G +
Sbjct: 215 QLTSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRI 274
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
D K I ++ LT L++S N
Sbjct: 275 GDEEAKSISEMKQLTSLDISNN 296
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 2/207 (0%)
Query: 161 NIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+K+ + DS K +S + LKSL I + + D G ++ +++LT L++ +
Sbjct: 97 NVKFSRRLLDSIEQAKFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGD 156
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
S+S + L L+++ Q+ D+G + + L SL++ IG+EG ++G+ L
Sbjct: 157 EGAKSISEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQL 216
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L++S ++G G + +SG+ L S+N+ I D + + + LKSLN+ +I D
Sbjct: 217 TSLDISGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGD 276
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGA 365
+++ + LT LD+ RI D A
Sbjct: 277 EEAKSISEMKQLTSLDISNNRIGDEEA 303
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 7/185 (3%)
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L+S+ + GI D + ++ + L SL++ QI D G +++ + LT L
Sbjct: 112 KFISEMKQLKSLTIDENGIGDEGAKFISEMKQLTSLSVYYNQIGDEGAKSISEMNQLTSL 171
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ G +I D GA + K L SL+I + + G K I ++ LT L++S N + D+
Sbjct: 172 DISGNQIGDEGAKSIIEVKQLTSLDIYFNQIGEEGAKFISGMNQLTSLDISGN-RIGDEG 230
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV------TANDIKRLQS 467
+ ISG+ L SLNV N+RI G + + +K L+SL + ++ + +++K+L S
Sbjct: 231 AKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSLNIGGNRIGDEEAKSISEMKQLTS 290
Query: 468 RDLPN 472
D+ N
Sbjct: 291 LDISN 295
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 41 YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
Y + D+ I S+ + L S+D+SG+ + D G + + L SLD F QI + G +
Sbjct: 151 YNQIGDEGAKSI-SEMNQLTSLDISGNQIGDEGAKSIIEVKQLTSLDIYFN-QIGEEGAK 208
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ G++ LTSL N I +G K+ +G+ L L++ G ++ + +L+SL
Sbjct: 209 FISGMNQLTSLDI-SGNRIGDEGAKSISGMNQLTSLNVYNNRIGDEGAKSIIDMKQLKSL 267
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
NI N I D + K +S + L SL IS +++ D
Sbjct: 268 NI-GGNRIGDEEAKSISEMKQLTSLDISNNRIGD 300
>gi|434405929|ref|YP_007148814.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
gi|428260184|gb|AFZ26134.1| Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum
stagnale PCC 7417]
Length = 384
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPLS LTNL + I +++ D I L L KL LNL + + LS L +L
Sbjct: 107 DIKPLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKNEFSD--IKPLSNLTNLI 162
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLE--LSDTQV 288
YL L+R Q++D + S LTNL +L+L I D E L NLT L L +E +SD +
Sbjct: 163 YLGLSRNQIND--IKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKP 220
Query: 289 GS---------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
S S ++HLS LT L + LS ISD ++ L+ L++L SL LD
Sbjct: 221 LSNLTNLTALYLWNNEISDIKHLSNLTKLTYLLLSENKISD--IKPLSNLTNLTSLGLDE 278
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI+D + L++LT LT+L+L +I+D L N NL SL + + + ++ +
Sbjct: 279 NQISD--IKPLSNLTNLTYLNLGLNQISDIKV--LSNLTNLTSLYLDYNQI--SNIQPLF 332
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+L++LT ++L N ++D ++ +S +T L L + N+ I
Sbjct: 333 NLNNLTKIDLDYN-QISD--IKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 35/313 (11%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ C + + L LK L KL S I SD+KPLS L NL L + +++ D I
Sbjct: 61 QNCNQANQKLTQLKEL-KLGSNKI--------SDIKPLSNLNNLIYLDLGFNQIID--IK 109
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
L L LT +N+ + + LS L L YLNL + + SD + S LTNL L
Sbjct: 110 PLSNLTNLTGINIYYNQIID--IKPLSNLTKLIYLNLIKNEFSD--IKPLSNLTNLIYLG 165
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
L I D + L+ L NL L+L + ++ S + LS LT L + L ISD ++
Sbjct: 166 LSRNQIND--IKPLSNLTNLTTLDLIENKI--SDIEPLSNLTKLTYLTLIENKISD--IK 219
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L+ L++L +L L +I+D + L++LT LT+L L +I+D L N NL SL
Sbjct: 220 PLSNLTNLTALYLWNNEISD--IKHLSNLTKLTYLLLSENKISDIKP--LSNLTNLTSLG 275
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+ ++D +K + +L++LT LNL N ++D ++++S LT L SL + ++I+
Sbjct: 276 LDENQISD--IKPLSNLTNLTYLNLGLN-QISD--IKVLSNLTNLTSLYLDYNQIS---- 326
Query: 439 RHLKPLKNLRSLT 451
+++PL NL +LT
Sbjct: 327 -NIQPLFNLNNLT 338
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 122/294 (41%), Gaps = 76/294 (25%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+G ++ + +I +K SNL L + I+ ++ L L+NL L RN
Sbjct: 116 NLTGINIYYNQIIDIKPLSNLTKLIYLNLIKNEFSDIKPLSNLTNLIYLGLSRNQI---N 172
Query: 123 GMKAFAGLINLVKLDL-----------------ERCTRIHGGLVNLKGLMKLESLN--IK 163
+K + L NL LDL T I + ++K L L +L
Sbjct: 173 DIKPLSNLTNLTTLDLIENKISDIEPLSNLTKLTYLTLIENKISDIKPLSNLTNLTALYL 232
Query: 164 WCNCITD--------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
W N I+D SD+KPLS LTNL SL + ++++D
Sbjct: 233 WNNEISDIKHLSNLTKLTYLLLSENKISDIKPLSNLTNLTSLGLDENQISD--------- 283
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
+ LS L +L YLNL Q+SD + S LTNL SL LD
Sbjct: 284 -----------------IKPLSNLTNLTYLNLGLNQISD--IKVLSNLTNLTSLYLDYNQ 324
Query: 264 IGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
I + + L NL NL ++L Q+ S ++ LS +T LE + + I D +
Sbjct: 325 ISNIQPLFNLN---NLTKIDLDYNQI--SDIKPLSNMTKLEKLEIQNNPIPDKA 373
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S + L + +NL SL D N QISD ++ LSNLT+L++ +K +
Sbjct: 260 SDIKPLSNLTNLTSLGLDEN---QISD-----IKPLSNLTNLTYLNLGLNQISDIKVLSN 311
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L NL L L+ + + N++ L L +L + SD+KPLS +T L+ L+I
Sbjct: 312 LTNLTSLYLD-----YNQISNIQPLFNLNNLTKIDLDYNQISDIKPLSNMTKLEKLEIQN 366
Query: 190 SKVTDSGIAYL 200
+ + D ++
Sbjct: 367 NPIPDKACPFI 377
>gi|320163275|gb|EFW40174.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 989
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 163/320 (50%), Gaps = 14/320 (4%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHL 102
+ND+ M I+ ++L +L + +TDSGL L + LQ LD + C ++++ GL L
Sbjct: 549 LNDQAMPTISQLPLTVL--NLERTLITDSGLARLAPLGATLQHLDISDCSKLTERGLALL 606
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L +L+ + + + L L+L R + G L +++ + L L++
Sbjct: 607 AAFPQLRTLAI---AGLPLTDVGRLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSL 663
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNL-EGCPVTAAC 220
+ D+D++ L LTNL SL++ ++ +S IA++ L LT L+L + VT
Sbjct: 664 ANTK-LGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISKL-PLTELDLTDYIHVTDEG 721
Query: 221 LDSLSALG-SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+ +SAL +L L+L+ +L+ G + T LE L LD + D+ + L L L+
Sbjct: 722 IQFISALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLDRTPLKDDVIPLLAPLTRLR 781
Query: 280 CLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L LS T + S+ +R S T LES+NLS+T I + L +L L L +LNLD+ ++T
Sbjct: 782 TLSLSRTHLTSAVVRSGAFSPFTRLESLNLSWTFIENQGLDQL-RLPMLTTLNLDSTRVT 840
Query: 338 DTGLAALTSLTGLTHLDLFG 357
LT L LT + + G
Sbjct: 841 ANVPLMLTQLPALTTVRMVG 860
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 128/464 (27%), Positives = 202/464 (43%), Gaps = 88/464 (18%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
+++ Q+ +LV + L++ ++ F C LQ + L YP
Sbjct: 460 QEVGMQLMAQLVRDKQLSDKNMGVFLPCHLQVIRLDAYPY-------------------- 499
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF---RRNNAIT 120
VT+ L ++ S LQ L ++ G+ H+ GL+NL L R N+
Sbjct: 500 -----VTNELLCAMRFFSLLQELSIRSAEFVTHVGINHIAGLNNLRVLDLGITRLND--- 551
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
Q M + L L L+LER L+ GL +L L G T
Sbjct: 552 -QAMPTISQL-PLTVLNLERT------LITDSGLARLAPL-----------------GAT 586
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L+ L IS CSK+T+ G+A L +L L + G P+T + LS L LNL R
Sbjct: 587 -LQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLT--DVGRLSNFPELRSLNLARTA 643
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSG 298
+ + + R +L L+L + +GD + L L NL L+L S Q+G+S + H+S
Sbjct: 644 IVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYLQYLTNLSSLKLPSRFQIGNSSIAHISK 703
Query: 299 LTNLESINLS-FTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L ++L+ + ++D ++ ++ L+ +L SL+L ++T G+ A+ + T L L L
Sbjct: 704 LP-LTELDLTDYIHVTDEGIQFISALAPTLVSLSLSNTKLTSAGIPAVAACTKLEVLQLD 762
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ D L LR+L + LT A V+
Sbjct: 763 RTPLKDDVIPLLAPLTRLRTLSLSRTHLTSAVVRS-----------------------GA 799
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
S T L SLN+S + I + GL L+ L L +L L+S +VTAN
Sbjct: 800 FSPFTRLESLNLSWTFIENQGLDQLR-LPMLTTLNLDSTRVTAN 842
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V G+ H++GL NL ++L T ++D ++ ++ L L LNL+ ITD+GLA L L
Sbjct: 525 VTHVGINHIAGLNNLRVLDLGITRLNDQAMPTISQLP-LTVLNLERTLITDSGLARLAPL 583
Query: 348 -TGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L HLD+ +++T+ G A L F LR+L I G LTD G
Sbjct: 584 GATLQHLDISDCSKLTERGLALLAAFPQLRTLAIAGLPLTDVG----------------- 626
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+S L SLN++ + I L ++ +L L+L + K+ ND++ L
Sbjct: 627 ----------RLSNFPELRSLNLARTAIVEGKLDSIRRYIHLVHLSLANTKLGDNDVRYL 676
Query: 466 Q 466
Q
Sbjct: 677 Q 677
>gi|320165522|gb|EFW42421.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 743
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 158/346 (45%), Gaps = 2/346 (0%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+ NN+IT AFAGL L +L+L+ GL L L + + N IT
Sbjct: 64 YLNNNSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNY-NQITSFP 122
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
GLT L+ L ++ +++T + L L+L +T+ D+ L L
Sbjct: 123 ADTFIGLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKN 182
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L ++ Q + F+ LT L L+L + I TGL L L+L++ Q+ ++
Sbjct: 183 LYMDFNQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTS 242
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ +GLT L ++L+ I+ S +GL++L+ LNL+ QIT + LT L +
Sbjct: 243 VDAFTGLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNY 302
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L L +I+ + L + + +T L++LT+L+LS N +T
Sbjct: 303 LFLTTNQISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDN-QITSI 361
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ + LT L +L++++++ITS L L L LE+ +T
Sbjct: 362 PADAFASLTALDTLSLNDNQITSIPANAFTSLTTLHRLPLENNPLT 407
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 129/294 (43%), Gaps = 1/294 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L++ +++T GL L L L +T+ D+
Sbjct: 68 NSITIISASAFAGLTALTRLELKTNQITSFPADTFIGLTFLRELFLNYNQITSFPADTFI 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L L L LN Q++ F+ T L L+L S I GL LK L +
Sbjct: 128 GLTFLRELFLNYNQITSIPTSAFASQTALIQLDLRSNLITSFPADTFIGLTMLKNLYMDF 187
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
Q S +GLT L ++L I+ GL++L L+L QIT+T + A T
Sbjct: 188 NQFTSIPANTFTGLTALTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFT 247
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LTHLDL RIT A+ LR L + G +T L++L L L+
Sbjct: 248 GLTALTHLDLTDNRITTISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTT 307
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N ++ + +GLT L ++++N+ ITS L L L L ++T+
Sbjct: 308 N-QISSISTSAFAGLTVLTEMSLNNNSITSISANTFAVLTALTILDLSDNQITS 360
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 132/321 (41%), Gaps = 29/321 (9%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L++N QI+ + GL+ L L F N IT+ AFA L++LDL
Sbjct: 113 LNYN---QITSFPADTFIGLTFLREL-FLNYNQITSIPTSAFASQTALIQLDLRS----- 163
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT GLT LK+L + ++ T GL
Sbjct: 164 --------------------NLITSFPADTFIGLTMLKNLYMDFNQFTSIPANTFTGLTA 203
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT L+L + + ++ + L +L +L+L Q+++ + F+ LT L L+L I
Sbjct: 204 LTFLSLHTNQIASIPANTFTGLTALTFLDLTNNQITNTSVDAFTGLTALTHLDLTDNRIT 263
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
+GL L+ L L+ Q+ + SGLT L + L+ IS S AGL+
Sbjct: 264 TISASTFSGLTALRLLNLNGNQITTISANTFSGLTTLNYLFLTTNQISSISTSAFAGLTV 323
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L ++L+ IT LT LT LDL +IT A + L +L + +T
Sbjct: 324 LTEMSLNNNSITSISANTFAVLTALTILDLSDNQITSIPADAFASLTALDTLSLNDNQIT 383
Query: 386 DAGVKHIKDLSSLTLLNLSQN 406
L++L L L N
Sbjct: 384 SIPANAFTSLTTLHRLPLENN 404
>gi|302804592|ref|XP_002984048.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
gi|300148400|gb|EFJ15060.1| hypothetical protein SELMODRAFT_445748 [Selaginella moellendorffii]
Length = 657
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 126/457 (27%), Positives = 219/457 (47%), Gaps = 53/457 (11%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D + ++A L ++DLS ++VTD GL + +L+ L+ C + DGGL L
Sbjct: 190 GITDIGIALVAVNCKQLRTLDLSYTEVTDEGLASIATLHSLEVLNLVSCNNVDDGGLRSL 249
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLK-GLMKLESL 160
+ S R +L+KLD+ RC+ + GL L + LE L
Sbjct: 250 KR-------SCR-----------------SLLKLDVSRCSNVSDAGLAALATSHLSLEQL 285
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTA 218
+ +C+ ITD + +L+S+ + ++ +G+ ++ +G ++L L+L C VT
Sbjct: 286 TLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELSLSKCRGVTD 345
Query: 219 ACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNL-T 273
+ +++ +L LNL C +L+D + S+ LESL ++SC I ++GL L
Sbjct: 346 RGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCSLITEDGLCGLGE 405
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL-AGLSSLKSLNL 331
G L+ L+ ++ + +GL+++S T L S+ L F + I+D + + A +L+ L+
Sbjct: 406 GCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFCSTITDKGVAHIGARCCNLRELDF 465
Query: 332 -DARQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
++ I D G+AA+ S L LDL + ++ITD L + L+ +E+ G L +
Sbjct: 466 YRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQRVELRGCVLVSST 525
Query: 389 -----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
K L+ + + SQ N L GL +N+S I++AGL L
Sbjct: 526 GLAVMASGCKRLTEIDIKRCSQIGNAGVSALSFFC--PGLRMMNISYCPISNAGLLSLPR 583
Query: 444 LKNLRSLTLES-------CKVTA-NDIKRLQSRDLPN 472
L L+S+ L C VT + K L++ LP+
Sbjct: 584 LSCLQSVRLVHLKNVTVDCFVTVLQNCKSLKNVKLPS 620
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 217/449 (48%), Gaps = 39/449 (8%)
Query: 56 GSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
G+ L S++LS G GL+ C++L +D ++C + D + L +SNL +L
Sbjct: 99 GNRLASINLSRVGGFTSAGLGLLARSCCASLTDVDLSYCSNLKDSDVLALAQISNLQALR 158
Query: 113 FRRNNAITAQGMKAFAGLINLVK-LDLERC---TRIHGGLVNLKGLMKLESLNIKWCNCI 168
++IT G+ A ++K L L+ C T I LV + +L +L++ + +
Sbjct: 159 LTGCHSITDIGLGCLAAGCKMLKLLTLKGCLGITDIGIALVAVN-CKQLRTLDLSYTE-V 216
Query: 169 TDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLK-GLQKLTLLNLEGCP-VTAACLDSLS 225
TD + ++ L +L+ L +SC+ V D G+ LK + L L++ C V+ A L +L+
Sbjct: 217 TDEGLASIATLHSLEVLNLVSCNNVDDGGLRSLKRSCRSLLKLDVSRCSNVSDAGLAALA 276
Query: 226 ALG-SLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLE 282
SL L L+ C ++DD F + +L+S+ LD C I GL + C LK L
Sbjct: 277 TSHLSLEQLTLSYCSIITDDLLATFQKFDHLQSIVLDGCEIARNGLPFIARGCKQLKELS 336
Query: 283 LSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA----GLSSLKSLNLDARQ 335
LS + V G+ ++ G T L +NL+ ++D SL +++ GL SLK +
Sbjct: 337 LSKCRGVTDRGIAAVAQGCTALHKLNLTCCRELTDASLCRISKDCKGLESLKMESCSL-- 394
Query: 336 ITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 392
IT+ GL L L LD ++D+G Y+ LRSL++ C +TD GV HI
Sbjct: 395 ITEDGLCGLGEGCPRLEELDFTECNMSDTGLKYISKCTALRSLKLGFC-STITDKGVAHI 453
Query: 393 -KDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 449
+L L+ ++ + D + I SG L L++S S+IT L+ L L+ L+
Sbjct: 454 GARCCNLRELDFYRSKGIGDAGVAAIASGCPKLKLLDLSYCSKITDCSLQSLSQLRELQR 513
Query: 450 LTLESC--------KVTANDIKRLQSRDL 470
+ L C V A+ KRL D+
Sbjct: 514 VELRGCVLVSSTGLAVMASGCKRLTEIDI 542
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 28/162 (17%)
Query: 29 RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF 88
R C L++L + G+ D + IAS C L+ LD
Sbjct: 456 RCCNLRELDFYRSKGIGDAGVAAIAS------------------------GCPKLKLLDL 491
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HG 146
++C +I+D L+ L L L + R +++ G+ A G L ++D++RC++I +
Sbjct: 492 SYCSKITDCSLQSLSQLRELQRVELRGCVLVSSTGLAVMASGCKRLTEIDIKRCSQIGNA 551
Query: 147 GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ L L +NI +C I+++ + L L+ L+S+++
Sbjct: 552 GVSALSFFCPGLRMMNISYCP-ISNAGLLSLPRLSCLQSVRL 592
>gi|254416357|ref|ZP_05030110.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176795|gb|EDX71806.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 438
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 189/395 (47%), Gaps = 57/395 (14%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ L G SNLT L + +N+IT + AGL NL L LE + ++ L +L
Sbjct: 66 ISPLAGFSNLTKL-YLESNSIT--DISPLAGLSNLTVLSLE-----SNSITDVSPLAELS 117
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + N + +D+ PL+GL+NL L ++ + +TD I L GL LT+L L+ +T
Sbjct: 118 NLTKLYLNNNSITDVSPLAGLSNLTKLYLNNNSITD--IGPLAGLSNLTVLYLDSNSITD 175
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ L+ L +L LNL ++D + L+NL + L + I + + L L NL
Sbjct: 176 --VSPLAGLSNLTVLNLGNNSITD--VNPLAELSNLTKVFLTNNSITN--ISPLAELSNL 229
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL------- 331
L L + + + L+GL+NL +NL I+D + LAGLS+L L+L
Sbjct: 230 TVLYLYSNSI--TDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFI 285
Query: 332 -DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
ITD ++ L L+ LT L+L ITD + L NL L + +TD +
Sbjct: 286 IGENSITD--ISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--IS 339
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ LS+LT L L N +TD + ++GL+ L L +S++ IT A L L NLR L
Sbjct: 340 PLAGLSNLTKLYLDSNS-ITD--VSPLAGLSNLTELFLSSNSITDA--SPLAQLTNLRRL 394
Query: 451 TL-------ESCKVTANDIKRLQSRDLPNLVSFRP 478
L +C V+ P + SF P
Sbjct: 395 FLGDNLIAQPTCPVSP-----------PGVCSFSP 418
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 155/309 (50%), Gaps = 33/309 (10%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
W N ITD + PL+G +NL L + + +TD I+ L GL LT+L+LE +T +
Sbjct: 59 WDNSITD--ISPLAGFSNLTKLYLESNSITD--ISPLAGLSNLTVLSLESNSITD--VSP 112
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L+ L +L L LN ++D + L+NL L L++ I D G L GL NL L L
Sbjct: 113 LAELSNLTKLYLNNNSITD--VSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYL 168
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ + + L+GL+NL +NL I+D + LA LS+L + L IT+ ++
Sbjct: 169 DSNSI--TDVSPLAGLSNLTVLNLGNNSITD--VNPLAELSNLTKVFLTNNSITN--ISP 222
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L+ LT L L+ ITD + L NL L + +TD + + LS+LT L+L
Sbjct: 223 LAELSNLTVLYLYSNSITD--ISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSL 278
Query: 404 SQ-------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
++TD + ++GL+ L LN+ + IT + L L NL L+L S
Sbjct: 279 GNADFFIIGENSITD--ISPLAGLSNLTVLNLGRNSIT--DVSPLAELSNLTKLSLGSNS 334
Query: 457 VTANDIKRL 465
+T DI L
Sbjct: 335 IT--DISPL 341
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 144/294 (48%), Gaps = 34/294 (11%)
Query: 45 NDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEH 101
N+ DV G S+L + L+ + +TD G L SNL LD N +S
Sbjct: 126 NNSITDVSPLAGLSNLTKLYLNNNSITDIG--PLAGLSNLTVLYLDSNSITDVS-----P 178
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLSNLT L+ NN+IT + A L NL K+ L + + N+ L +L +L
Sbjct: 179 LAGLSNLTVLNLG-NNSIT--DVNPLAELSNLTKVFLT-----NNSITNISPLAELSNLT 230
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV----- 216
+ + + +D+ PL+GL+NL L + + +TD I+ L GL LT L+L
Sbjct: 231 VLYLYSNSITDISPLAGLSNLTVLNLDNNSITD--ISPLAGLSNLTELSLGNADFFIIGE 288
Query: 217 -TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ + L+ L +L LNL R ++D + L+NL L+L S I D + L GL
Sbjct: 289 NSITDISPLAGLSNLTVLNLGRNSITD--VSPLAELSNLTKLSLGSNSITD--ISPLAGL 344
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
NL L L + + + L+GL+NL + LS I+D S LA L++L+ L
Sbjct: 345 SNLTKLYLDSNSI--TDVSPLAGLSNLTELFLSSNSITDAS--PLAQLTNLRRL 394
>gi|334119190|ref|ZP_08493277.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333458661|gb|EGK87278.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 489
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 176/371 (47%), Gaps = 57/371 (15%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLV 134
+ D L+SL + +SD + ++ L +LT+L+ + NN I + +K L NL
Sbjct: 98 INDIKPLESLTNLTGLVLSDNQINDIKPLESLTNLTKLYLGNNKI--KDIKPLQSLTNLT 155
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+L L TRI SD+KPL LTNL L +S +K D
Sbjct: 156 QLGLHN-TRI--------------------------SDIKPLQSLTNLTKLDLSNNKTLD 188
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I L+ L LT L L+ + + L +L +L +L L Q+ D + LTNL
Sbjct: 189 --IKPLQSLTNLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIKD--IKPLESLTNL 242
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
SL+L + I D + L L L L L + ++ S ++ L LTNL I L ISD
Sbjct: 243 TSLHLYNNQISD--IKPLESLTKLTWLWLDNNKI--SDIKPLKSLTNLTEIKLGSNKISD 298
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
++ L L++L SL L QI+D + L SLT LT L L +I+D L + NL
Sbjct: 299 --IKPLESLTNLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKP--LESLTNL 352
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
+ + ++D +K ++ L+ LTLL L+ N K LE ++ LTG+V +
Sbjct: 353 TGIVLSNNRISD--IKPLESLNKLTLLALTNNQISDIKPLESLTNLTGIV--------LM 402
Query: 435 SAGLRHLKPLK 445
S ++ +KPL+
Sbjct: 403 SNQIQDIKPLQ 413
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 164/338 (48%), Gaps = 49/338 (14%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-----------------S 195
KL S+ + N +D+KPL LTNL L +S +++ D +
Sbjct: 81 AYQKLSSIEELYLNDKKINDIKPLESLTNLTGLVLSDNQINDIKPLESLTNLTKLYLGNN 140
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSRLT 252
I +K LQ LT NL + + + L SL NL + LS++ + LT
Sbjct: 141 KIKDIKPLQSLT--NLTQLGLHNTRISDIKPLQSLT--NLTKLDLSNNKTLDIKPLQSLT 196
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
NL L LD+ I D + L L NL L+L Q+ ++ L LTNL S++L I
Sbjct: 197 NLTKLYLDNNKIKD--IKPLESLTNLTHLQLMSNQIK--DIKPLESLTNLTSLHLYNNQI 252
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
SD ++ L L+ L L LD +I+D + L SLT LT + L +I+D L +
Sbjct: 253 SD--IKPLESLTKLTWLWLDNNKISD--IKPLKSLTNLTEIKLGSNKISDIKP--LESLT 306
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
NL SL + ++D +K ++ L+ LT L L N K LE ++ LTG+V +SN+R
Sbjct: 307 NLTSLYLHNNQISD--IKPLESLTKLTSLWLINNQISDIKPLESLTNLTGIV---LSNNR 361
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTAN---DIKRLQS 467
I+ +KPL++L LTL +T N DIK L+S
Sbjct: 362 ISD-----IKPLESLNKLTL--LALTNNQISDIKPLES 392
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 140/303 (46%), Gaps = 39/303 (12%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D LQSL + + + ++ ++ L +LT+L+ + + + +K L NL L L
Sbjct: 188 DIKPLQSLTNLTKLYLDNNKIKDIKPLESLTNLTHLQLMSNQIKDIKPLESLTNLTSLHL 247
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ + ++K L L L W + SD+KPL LTNL +++ +K++D I
Sbjct: 248 -----YNNQISDIKPLESLTKLTWLWLDNNKISDIKPLKSLTNLTEIKLGSNKISD--IK 300
Query: 199 YLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L+ L LT L L ++ L+SL+ L SL+ +N Q+SD + LTNL +
Sbjct: 301 PLESLTNLTSLYLHNNQISDIKPLESLTKLTSLWLIN---NQISD--IKPLESLTNLTGI 355
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--- 314
L + I D + L L L L L++ Q+ S ++ L LTNL I L I D
Sbjct: 356 VLSNNRISD--IKPLESLNKLTLLALTNNQI--SDIKPLESLTNLTGIVLMSNQIQDIKP 411
Query: 315 -----------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
++ L L++L L+L+ QI+D + L SLT LT + L G
Sbjct: 412 LQSLTNLTLLALTNNKISDIKPLQSLTNLTLLSLEKNQISD--IKPLESLTNLTEIRLSG 469
Query: 358 ARI 360
I
Sbjct: 470 NPI 472
>gi|195150157|ref|XP_002016021.1| GL10712 [Drosophila persimilis]
gi|194109868|gb|EDW31911.1| GL10712 [Drosophila persimilis]
Length = 529
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R AL+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-ALKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNT 294
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 295 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEA 354
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 355 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 414
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 415 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQ 474
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 475 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 161/319 (50%), Gaps = 37/319 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHL 342
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKL 320
G+ D C LSD +G H++ GLT+L+SINLSF ++D L+ L
Sbjct: 343 GLQD-------------CQRLSDEALG-----HIAQGLTSLKSINLSFCVSVTDSGLKHL 384
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
A + L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRS
Sbjct: 385 ARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRS 444
Query: 377 LEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRI 433
L + +TD G VK K L L LN+ Q +TDK L+ L LT L ++++ +++
Sbjct: 445 LSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQL 504
Query: 434 TSAGLRHLKPLKNLRSLTL 452
+S G+ + L L+ L L
Sbjct: 505 SSKGIDIIMKLPKLQKLNL 523
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L NLE
Sbjct: 227 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLENLEL 285
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTH 352
N++ TG+ L GL L+ LNL + I+D G+ L + L H
Sbjct: 286 GGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEH 341
Query: 353 LDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 342 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 400
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 401 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|66807643|ref|XP_637544.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
gi|60465980|gb|EAL64047.1| hypothetical protein DDB_G0286583 [Dictyostelium discoideum AX4]
Length = 722
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 190/365 (52%), Gaps = 24/365 (6%)
Query: 47 KWMDVIASQGSSLLSVDLSG--SDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHLR 103
K MD I + G+ + S+DLS + V + L++ K + L ++ F C ++D GL+ R
Sbjct: 309 KKMDQIVASGARIYSLDLSHQFAVVNNDFLLNCFKYMAELSNVYFRNCENLNDIGLQIFR 368
Query: 104 GLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLE 158
+ NL +L R +N IT G++ GL+NL +L L CT I GL L L+KL+
Sbjct: 369 QPNFEKNLKTLDLR-DNRITDVGIRNLKGLLNLEELYLGSTGCTDI--GLALLCNLLKLK 425
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVT 217
+L++ CN ITDS M + T LK L +S ++VTD GI + L L L + C +T
Sbjct: 426 TLDVSKCN-ITDSSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRIT 484
Query: 218 AACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGL 275
L L+ LG +L L++ + ++ +G + L+ L L I D + +L L
Sbjct: 485 NQSLFFLAYLGKTLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSL 544
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESIN---LSFTGISDGS-LRKLAGLSSLKSLNL 331
NL+ L+LSD + + LS LTNL+S+ LS T ISD S + + + SL+ L+L
Sbjct: 545 SNLRKLDLSDYR----NISDLSPLTNLQSLTELLLSNTKISDNSIINSIKTMDSLEVLSL 600
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ ++T G++ L +L + +I YL K+L+ L+I +TD + +
Sbjct: 601 NKTEVTTEGVSQLVNLNLTSLSLS-STKIDGKSLYYLGQMKSLQKLDISFNDITDNSMDY 659
Query: 392 IKDLS 396
+K ++
Sbjct: 660 LKPIA 664
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 79/299 (26%)
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
C ++ L ++++ N C+ L+D G + F R N E NL
Sbjct: 341 CFKYMAELSNVYFRN---CENLNDIGLQIF-RQPNFEK--------------------NL 376
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTG------------------------ISD 314
K L+L D ++ G+R+L GL NLE + L TG I+D
Sbjct: 377 KTLDLRDNRITDVGIRNLKGLLNLEELYLGSTGCTDIGLALLCNLLKLKTLDVSKCNITD 436
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH---------------------- 352
S+ + + LK L L Q+TD G+ ++ L L
Sbjct: 437 SSMDIICRFTELKFLYLSGTQVTDKGINTISKLPNLIQLYVSNCLRITNQSLFFLAYLGK 496
Query: 353 ----LDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
LD+F +I +G LR FK L+ L + G + DA + H+ LS+L L+LS
Sbjct: 497 TLKLLDIFQTKIGLNGFIQLRMFKQLQFLVLPGRDSINDATIGHLNSLSNLRKLDLSDYR 556
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N++D L ++ L L L +SN++I+ ++ + +K + +L L+L +VT + +L
Sbjct: 557 NISD--LSPLTNLQSLTELLLSNTKISDNSIINSIKTMDSLEVLSLNKTEVTTEGVSQL 613
>gi|430741732|ref|YP_007200861.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
gi|430013452|gb|AGA25166.1| hypothetical protein Sinac_0756 [Singulisphaera acidiphila DSM
18658]
Length = 304
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 99/183 (54%), Gaps = 6/183 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+GL L L+ + + F ++++ GL HL+G ++L SL R IT +G+ A
Sbjct: 113 MTDTGLAQLGGLPRLRQV-YCFKPKVTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLA 171
Query: 129 GLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
GL NL KL+L RI G GL +L L +L +L + TD+ + L TNLK L +
Sbjct: 172 GLTNLEKLNLS-GARIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQLGRFTNLKQLYL 227
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
K TD+G+A L L+ LT L LE +T A L ++ L +L L+L +S EK
Sbjct: 228 GTGKYTDAGLAELSKLRSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEK 287
Query: 248 FSR 250
F R
Sbjct: 288 FKR 290
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 4/216 (1%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
GS+ L + +SD+ L+ L + + D GL L GL L+ + +
Sbjct: 77 GSINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPK 136
Query: 288 VGSSGLRHLSGLTNLESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
V ++GL HL G T+L S+ L I+D L LAGL++L+ LNL +I GL L
Sbjct: 137 VTNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLAR 196
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L L L TD+G A L F NL+ L + G TDAG+ + L SLT L L +
Sbjct: 197 LGRLRTLVL--GSTTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGL-EA 253
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+LT+ L ++GL L L++ + ++ A + K
Sbjct: 254 GDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 25/226 (11%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I+D L L+ L + +TD+G+A L GL +L + VT A L L
Sbjct: 89 ISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGLAHLKGA 148
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L L R I DEGLV+L GL NL+ L LS +
Sbjct: 149 THLVSLELLRVP-----------------------EITDEGLVHLAGLTNLEKLNLSGAR 185
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ GL HL+ L L ++ L T +D L +L ++LK L L + TD GLA L+ L
Sbjct: 186 IAGPGLPHLARLGRLRTLVLGST--TDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKL 243
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
LT L L +T++ ++ NL L++ G ++ A ++ K
Sbjct: 244 RSLTELGLEAGDLTEAVLIHVAGLPNLERLDLGGAPVSQAAIEKFK 289
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 3/195 (1%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
L P++ +L L L + ++D G + L L + + + GL
Sbjct: 83 TLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKVTNAGL 142
Query: 270 VNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+L G +L LEL ++ GL HL+GLTNLE +NLS I+ L LA L L++
Sbjct: 143 AHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARLGRLRT 202
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L + TD GLA L T L L L + TD+G A L ++L L + G LT+A
Sbjct: 203 LVLGS--TTDAGLAQLGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLEAGDLTEAV 260
Query: 389 VKHIKDLSSLTLLNL 403
+ H+ L +L L+L
Sbjct: 261 LIHVAGLPNLERLDL 275
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%)
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
S+ L I+D AL L L + +TD+G A L LR + +
Sbjct: 78 SINPATLPQVPISDEAFTALGMFDQLQELTMVVGVMTDTGLAQLGGLPRLRQVYCFKPKV 137
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T+AG+ H+K + L L L + +TD+ L ++GLT L LN+S +RI GL HL L
Sbjct: 138 TNAGLAHLKGATHLVSLELLRVPEITDEGLVHLAGLTNLEKLNLSGARIAGPGLPHLARL 197
Query: 445 KNLRSLTLESC 455
LR+L L S
Sbjct: 198 GRLRTLVLGST 208
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++TD GL+HL +NL+ L+ + +I+ GL HL L L +L + T G+
Sbjct: 160 PEITDEGLVHLAGLTNLEKLNLSGA-RIAGPGLPHLARLGRLRTLVL---GSTTDAGLAQ 215
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
NL +L L GL L L L L ++ +T++ + ++GL NL+ L
Sbjct: 216 LGRFTNLKQLYLGTGKYTDAGLAELSKLRSLTELGLE-AGDLTEAVLIHVAGLPNLERLD 274
Query: 187 ISCSKVTDSGIAYLK 201
+ + V+ + I K
Sbjct: 275 LGGAPVSQAAIEKFK 289
>gi|218960535|ref|YP_001740310.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans]
gi|167729192|emb|CAO80103.1| putative Phosphoprotein phosphatase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 3445
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 173/328 (52%), Gaps = 27/328 (8%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+ L L+SL++ N I SD+ PL+GLTNL+ L + ++++D ++ L L L L+L
Sbjct: 2941 QYLTNLQSLDLD-SNQI--SDLSPLAGLTNLQELYLYYNQISD--LSPLAELTNLQYLDL 2995
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G ++ L L+ L +L L L Q+ D + LTNL+ L+L S I D L
Sbjct: 2996 GGNQISD--LSPLAGLNNLQELYLYWNQIGD--LSPLAGLTNLQELDLYSNQISD--LSP 3049
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L NL L+LS Q+ S L L+GLTNL+ + L + I+ L LAGL++L+ LNL
Sbjct: 3050 LAELTNLWYLDLSYNQI--SDLSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQVLNL 3105
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ QI+D L+ L LT L +L L+ +I+D L NL L + ++D +
Sbjct: 3106 YSNQISD--LSPLAELTNLQYLHLYYNQISDLSP--LTGLTNLHYLYLAYNQISD--LSP 3159
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ L++L L+L N ++D + ++ LT L L + +++I+ L L L NL L
Sbjct: 3160 LIGLTNLQYLHLYYN-QISD--ISPLAELTNLQYLWLDSNQISD--LSPLAGLTNLWWLW 3214
Query: 452 LESCKVTANDIKRLQSRDLP-NLVSFRP 478
L+ ++ + QS LP + S+ P
Sbjct: 3215 LDGNPISYESMLLAQSWSLPWSTTSYNP 3242
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 134/252 (53%), Gaps = 22/252 (8%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLL 209
L GL L+ L++ N I SD+ PL+GLTNL+ L + +++ S +A L LQ+L L
Sbjct: 2353 LAGLTNLQYLDLG-GNQI--SDLSPLAGLTNLQDLYLGWNQINYLSPLAGLTNLQELDLN 2409
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
N + + ++ L+ L +L L L Q+SD S LTNL+ L L+ I + +
Sbjct: 2410 NNQ-----ISNINPLAGLTNLQKLYLYYNQISD--LSPLSGLTNLQYLLLEYNQISN--I 2460
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L GL NL+ L+L Q+ S L L+ LTNL ++LS+ ISD L L GL +L+ L
Sbjct: 2461 SPLAGLTNLQVLDLYSNQI--SDLSPLAELTNLWYLDLSYNQISD--LSPLVGLVNLQGL 2516
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD-AG 388
LD QI D L+ L LT L +L L+ +I+D L NL L + ++D +
Sbjct: 2517 WLDNNQIND--LSPLIGLTNLQYLHLYYNQISDLSP--LTGLTNLHYLYLAYNQISDLSS 2572
Query: 389 VKHIKDLSSLTL 400
V+ + +L L L
Sbjct: 2573 VEGLTNLQELYL 2584
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 128/263 (48%), Gaps = 43/263 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L +NLQ LD QISD L L GL+NL L N + AGL NL +L
Sbjct: 2353 LAGLTNLQYLDLG-GNQISD--LSPLAGLTNLQDLYLGWNQI---NYLSPLAGLTNLQEL 2406
Query: 137 DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
DL + + I+ L GL L+ L + + SD+ PLSGLTNL+ L + +++
Sbjct: 2407 DLNNNQISNINP----LAGLTNLQKLYLYYNQI---SDLSPLSGLTNLQYLLLEYNQI-- 2457
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
S I+ L GL L +L+L ++ L L+ L +L+YL+L+ Q+SD L NL
Sbjct: 2458 SNISPLAGLTNLQVLDLYSNQISD--LSPLAELTNLWYLDLSYNQISD--LSPLVGLVNL 2513
Query: 255 ESLNLDSCGIGD----EGLVNL----------------TGLCNLKCLELSDTQVGSSGLR 294
+ L LD+ I D GL NL TGL NL L L+ Q+ S L
Sbjct: 2514 QGLWLDNNQINDLSPLIGLTNLQYLHLYYNQISDLSPLTGLTNLHYLYLAYNQI--SDLS 2571
Query: 295 HLSGLTNLESINLSFTGISDGSL 317
+ GLTNL+ + L + IS S+
Sbjct: 2572 SVEGLTNLQELYLDYNPISYESM 2594
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 35/310 (11%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
LTNL+SL + ++++D ++ L GL L L L + L L+ L +L YL+L
Sbjct: 2312 LTNLQSLDLDSNQISD--LSPLAGLTNLLELYLLDNMIN--YLSPLAGLTNLQYLDLGGN 2367
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
Q+SD + LTNL+ L L I L L GL NL+ L+L++ Q+ S + L+G
Sbjct: 2368 QISD--LSPLAGLTNLQDLYLGWNQIN--YLSPLAGLTNLQELDLNNNQI--SNINPLAG 2421
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNL+ + L + ISD L L+GL++L+ L L+ QI++ ++ L LT L LDL+
Sbjct: 2422 LTNLQKLYLYYNQISD--LSPLSGLTNLQYLLLEYNQISN--ISPLAGLTNLQVLDLYSN 2477
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGV--------------KHIKDLSSLTLLNLS 404
+I+D L NL L++ ++D I DLS L L
Sbjct: 2478 QISDLSP--LAELTNLWYLDLSYNQISDLSPLVGLVNLQGLWLDNNQINDLSPLIGLTNL 2535
Query: 405 QNCNLTDKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
Q +L + +S LTGL +L+ ++ ++I+ L ++ L NL+ L L+ ++
Sbjct: 2536 QYLHLYYNQISDLSPLTGLTNLHYLYLAYNQISD--LSSVEGLTNLQELYLDYNPISYES 2593
Query: 462 IKRLQSRDLP 471
+ QS LP
Sbjct: 2594 MLLAQSWSLP 2603
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 32/228 (14%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
+++++G L +L + + SD+ PL+GL NL+ L + ++++D
Sbjct: 1089 IISIEGAQYLTNLQVMYLYSNQISDLSPLAGLANLQELLLYANQISDISPLAGLNNLQYL 1148
Query: 195 -------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S ++ L GL L L L ++ + L+ L +L L+L Q+S
Sbjct: 1149 LLQYNQISDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSP 1204
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LTNL+ L L S I D L L G+ NL+ + L + Q+ S L L+GLTNL+ + L
Sbjct: 1205 LAGLTNLQELYLHSNQISD--LSPLAGMTNLRVINLKNNQI--SDLSPLAGLTNLQYLLL 1260
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ I+D + LAGL++L SLNL QI+D L+ L LT L +L L
Sbjct: 1261 GWNKIND--ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYL 1304
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 14/215 (6%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+++++G +L+ + + S++ PL+GLTNLK L + ++++D I L GL ++
Sbjct: 1694 IISIEGAQYFTNLDSLYLSYNQISNLNPLAGLTNLKGLNLGSNQISD--INPLAGLTNIS 1751
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
L L G + + + L L +L L L+ Q+SD + L ++ + L S I D
Sbjct: 1752 WLFLFGNYI--SNIAPLEGLYNLRNLQLHYNQISD--ITPLAALIDIGGIALGSNQIVD- 1806
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L GL +L LEL Q+ + + LSGL NL+ + L I D + LAGLS L+
Sbjct: 1807 -ITPLAGLTHLIGLELYHNQI--NNIDALSGLINLQWLYLDGNQIID--ISPLAGLSILR 1861
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L L+ QI D ++ L+ L L +L L+ +I+D
Sbjct: 1862 ELYLENNQIND--ISTLSELNNLQYLFLYNNQISD 1894
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 120/247 (48%), Gaps = 35/247 (14%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------------- 290
E LTNL+ + L S I D L L GL NL+ L L Q+
Sbjct: 1092 IEGAQYLTNLQVMYLYSNQISD--LSPLAGLANLQELLLYANQISDISPLAGLNNLQYLL 1149
Query: 291 ------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
S L L+GLTNL+++ L++ ISD + LAGL++L+ L+L + QI+ L+ L
Sbjct: 1150 LQYNQISDLSPLAGLTNLQNLILAYNQISD--ISPLAGLTNLQVLDLYSNQIS--YLSPL 1205
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LT L L L +I+D L NLR + + ++D + + L++L L L
Sbjct: 1206 AGLTNLQELYLHSNQISDLSP--LAGMTNLRVINLKNNQISD--LSPLAGLTNLQYLLLG 1261
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
N + D + ++GLT L SLN+S ++I+ L L L NL L L++ ++ +
Sbjct: 1262 WN-KIND--ISPLAGLTNLWSLNLSYNQISD--LSPLAGLTNLWYLYLDNNPISYESMLL 1316
Query: 465 LQSRDLP 471
QS LP
Sbjct: 1317 SQSWALP 1323
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 87/206 (42%), Gaps = 53/206 (25%)
Query: 72 SGLIHLKDCSNLQSL--DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
S L L +NLQ L ++N QIS+ + L GL+NL L N + A
Sbjct: 2436 SDLSPLSGLTNLQYLLLEYN---QISN--ISPLAGLTNLQVLDLYSNQI---SDLSPLAE 2487
Query: 130 LINLVKLDLERCTRIHG-----GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L NL LDL +I GLVNL+GL W + +D+ PL GLTNL+
Sbjct: 2488 LTNLWYLDL-SYNQISDLSPLVGLVNLQGL---------WLDNNQINDLSPLIGLTNLQY 2537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L + ++++D L L+ L +L YL L Q+SD
Sbjct: 2538 LHLYYNQISD--------------------------LSPLTGLTNLHYLYLAYNQISD-- 2569
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLV 270
LTNL+ L LD I E ++
Sbjct: 2570 LSSVEGLTNLQELYLDYNPISYESML 2595
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+ SD Q + L+ L+G NL G + S+ L++L+SL+LD+ QI+D L
Sbjct: 2909 QPSDYQPTIADLQGLAG-------NLHADGRNIISIEGAQYLTNLQSLDLDSNQISD--L 2959
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ L LT L L L+ +I+D L NL+ L++ G I DLS L L
Sbjct: 2960 SPLAGLTNLQELYLYYNQISDLSP--LAELTNLQYLDLGG--------NQISDLSPLAGL 3009
Query: 402 NLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N Q L L ++GLT L L++ +++I+ L L L NL L L +++
Sbjct: 3010 NNLQELYLYWNQIGDLSPLAGLTNLQELDLYSNQISD--LSPLAELTNLWYLDLSYNQIS 3067
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L +NLQ L + QISD L L G++NL ++ + NN I+ + AGL
Sbjct: 1200 SYLSPLAGLTNLQEL-YLHSNQISD--LSPLAGMTNLRVINLK-NNQIS--DLSPLAGLT 1253
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
NL L L +I+ + L GL L SLN+ + SD+ PL+GLTNL L + +
Sbjct: 1254 NLQYL-LLGWNKIND-ISPLAGLTNLWSLNLSYNQI---SDLSPLAGLTNLWYLYLDNNP 1308
Query: 192 VT 193
++
Sbjct: 1309 IS 1310
>gi|290991127|ref|XP_002678187.1| predicted protein [Naegleria gruberi]
gi|284091798|gb|EFC45443.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 122/246 (49%), Gaps = 3/246 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTL 208
+K L +L+SL I+ I D++ G L L SL IS C + + G+ ++ L KLT
Sbjct: 10 MKKLNQLKSLKIR-SKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTE 68
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L+++ C + + A+ L L++N C L G +L ++ L + I D
Sbjct: 69 LHIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSL 128
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+ ++ + L L+ +G G + +S +TNL+++ L F I ++ ++G+ L S
Sbjct: 129 ALEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLIS 188
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LN+ I D G+ +++ + LT L + I D GA Y+ NL L+I LT G
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKG 248
Query: 389 VKHIKD 394
+K +++
Sbjct: 249 IKLLQE 254
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSD-TQVGSSGLRHLSGLTNLESI 305
+L L+SL + S I E L + G L L L +SD +G+ G+ + L L +
Sbjct: 10 MKKLNQLKSLKIRSKFIFGEDLRSYIGELKQLNSLNISDCINIGNRGVNVIRELDKLTEL 69
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
++ I + +K+ + L++L+++ + G+A++ L +T L + I+DS A
Sbjct: 70 HIDNCCIGEKGAKKIGAMQQLRTLSINGCGLGKKGVASVCKLKDMTKLGIRKNHISDSLA 129
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ L L+ + G K I +++L L L N ++ + ++ ISG+ L+S
Sbjct: 130 LEISQMTKLTELDAGVNDIGPEGAKSISQMTNLKTLLLDFN-DIGKEGVKYISGMKQLIS 188
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LN+S + I G++ + +KNL L++ S
Sbjct: 189 LNISENDIRDKGVKSISEMKNLTCLSVRS 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 2/221 (0%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
++ + L SL+ + CI I + G+ +R L LT L N I +G K + L
Sbjct: 34 YIGELKQLNSLNISDCINIGNRGVNVIRELDKLTELHID-NCCIGEKGAKKIGAMQQLRT 92
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L + C G+ ++ L + L I+ N I+DS +S +T L L + +
Sbjct: 93 LSINGCGLGKKGVASVCKLKDMTKLGIRK-NHISDSLALEISQMTKLTELDAGVNDIGPE 151
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G + + L L L+ + + +S + L LN++ + D G + S + NL
Sbjct: 152 GAKSISQMTNLKTLLLDFNDIGKEGVKYISGMKQLISLNISENDIRDKGVKSISEMKNLT 211
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
L++ S IGDEG ++ + NL L++S + G++ L
Sbjct: 212 CLSVRSNSIGDEGAKYISEMSNLTQLDISCNVLTQKGIKLL 252
>gi|115504803|ref|XP_001219194.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|83642676|emb|CAJ16709.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 735
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 180/409 (44%), Gaps = 11/409 (2%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG+ +++ L ++ + L+ LD +FC + D + + + L L+ + +IT
Sbjct: 329 LDLSGTSISNESLWNISESKLLRRLDLSFCGGVKD--ISPISDIVTLEELNLKGCTSIT- 385
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+G+ L+NL L++ G L N+ + L L++ C + D + +
Sbjct: 386 EGVDKLGNLVNLHILNMSNTPLQSGFLYNISSIESLVELDLSSCWGVASLDSSVQTAVRM 445
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QL 240
K + GI L L KL LLN+ PVT CL L SL +LNL+ C L
Sbjct: 446 RKGSYPLARHI--EGINALGRLPKLRLLNMSSTPVTDECLHGLQMCKSLVWLNLSLCANL 503
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+D S + LE ++L CG G +L L L+ L+L +T + L ++
Sbjct: 504 TD--VSPLSSVKTLEEVDLGCCGNLKWGAGSLRRLPQLRILDLKNTVITDHCLGDVTYGG 561
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR 359
+ S L G++D S + + + LD T +A LTS+T L L G R
Sbjct: 562 GVVSRMLGRCGMADLSFSRWSIRRGGNLVRLDLSSCWGLTDIAHLTSITTLEELRFTGCR 621
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
G L L L++ G +TD ++ + SL LN+S NLTD + +S
Sbjct: 622 NLKDGVDALGQLPVLHLLDLSGTSITDDSLQGLSTCRSLVTLNISSCANLTD--VSPLSR 679
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
++ L LN+ S+ G+ L L L + L + + L+ R
Sbjct: 680 ISSLEELNLQKSKHIRRGIDELVSLPRLYLVYLCRADFSRGVAEELEKR 728
>gi|242089917|ref|XP_002440791.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
gi|241946076|gb|EES19221.1| hypothetical protein SORBIDRAFT_09g006650 [Sorghum bicolor]
Length = 608
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 124/515 (24%), Positives = 212/515 (41%), Gaps = 90/515 (17%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ +F L R L LE F +++++ L + V+ +W+ + S +
Sbjct: 44 LPAPLADALFRRLAARRLLFPSLLEVFSR-SVEEVDLSGFLSVDAEWLAYLGSFRFLRVL 102
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ + + L + L+ LD + C +ISD G++H+ + +L L +T
Sbjct: 103 TLADCKNIDNDAVWSLSGMNTLKDLDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTN 161
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G+ + L NL LDL GG++ +TD ++ L LT
Sbjct: 162 NGVMLISSLTNLSFLDL-------GGIL------------------MTDKSLQSLQVLTR 196
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-------GCPVTAACLD------------ 222
L+ L I S+ T+ G + LK +L LNL P T CL+
Sbjct: 197 LEHLDIWGSETTNEGASTLKSFARLIFLNLALTRVNHLSIPPTTRCLNMSNCEIHSICDE 256
Query: 223 -------------SLSALG------------SLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
S + G SL +L+L+ C+LS+ ++ NLE L
Sbjct: 257 DSEVPVPLENFIVSAATFGNIDKVFSSIQASSLTHLDLSSCKLSN--LSFLEKMKNLEHL 314
Query: 258 NLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDG 315
+L I D + ++ L NL+ L L +T + S L L+G + NL S++L+ T I D
Sbjct: 315 DLSYNIITDGAIEHIAKLGTNLQYLSLKNTGITSQALCILAGTVPNLTSLSLANTKIDDS 374
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+L + + L++++L I L + G TH+ F + K L
Sbjct: 375 ALAYIGMIPLLRTIDLSQTSIKGCALENKFYLMAGFTHMSAF------------EHLKYL 422
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL + L+ + + L++L L L + L+D L +S + L+ L + ++
Sbjct: 423 ESLNLEDTPLSAEVIPPLASLAALKYLYLKSDF-LSDPALHALSAASNLIHLGFCGNILS 481
Query: 435 SAGLRHLKPLKNLRSLTLESCKV-TANDIKRLQSR 468
S+GL P L L L C + T I + R
Sbjct: 482 SSGLLQFVPPTTLCVLDLSGCWILTGEAISTFRKR 516
>gi|386333663|ref|YP_006029833.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334196112|gb|AEG69297.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 629
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 208/485 (42%), Gaps = 54/485 (11%)
Query: 2 LPRDISQQIFNEL--VYSRCLTEVSLE------------AFRDCALQDLCLGQYPGVNDK 47
LP ++ QQI + R + EV+ E R+ A+ LG+YP +
Sbjct: 91 LPPELWQQIGSSAGARPRRAMREVNRELRNASRAVVTHLTIRNPAMFG-QLGKYPALKSV 149
Query: 48 W------MDVIASQGSSLLSVDLS---GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
++ + + + +D+S GS V+++GL L L+SL N I+I G
Sbjct: 150 RFKGALTLEALKALPPGVEHLDISRCTGSGVSNAGLALLA-TRPLKSLSLN-GIEIDAEG 207
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
L ++LTSLS +I + A A ++ LDL G L G L
Sbjct: 208 ARLLATCTSLTSLSLT-GCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAG-APLA 265
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN+ N I D L+ LKSL S + + D+G+ LT LNL G +
Sbjct: 266 SLNLH-NNGIGDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGP 324
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
A +L SL L+L+ +L D G + + +L SLNL IGD+G L L
Sbjct: 325 AGARALRCNTSLTELDLSTNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTL 384
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLE------------------------SINLSFTGISD 314
K L LS +G G L G T L S++L I D
Sbjct: 385 KSLNLSYNPIGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD 444
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
R +A +L L+L I D G AL LT L+L+G + D GAA L + L
Sbjct: 445 SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNEVDDDGAAALAHHPRL 504
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
SL + + G +H+ ++LT L+LS+N + + + +S T L +LNVS++ I
Sbjct: 505 TSLNLGRNRIGPNGAQHLAKSATLTELDLSEN-RIGPEGADALSLSTVLTTLNVSDNAIG 563
Query: 435 SAGLR 439
G R
Sbjct: 564 EKGAR 568
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 162/407 (39%), Gaps = 46/407 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE-----------HLRGL 105
+SL S+ L+G + D L ++ SLD + + DG H G+
Sbjct: 215 TSLTSLSLTGCSIGDRAATALARSRSIASLDLSVNMIGPDGARALAGAPLASLNLHNNGI 274
Query: 106 SNLTSLSFR----------RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155
+ +L+ NN I G+ FA L +L+L G L+
Sbjct: 275 GDEGALALATSGTLKSLNASNNGIGDAGVLGFADNAVLTQLNLAGNMIGPAGARALRCNT 334
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L L++ N + D+ + L+ +L SL + +++ D G L L LNL P
Sbjct: 335 SLTELDLS-TNRLGDAGAQVLAANRSLTSLNLRHNEIGDDGTEALARNTTLKSLNLSYNP 393
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L +L L+L C + G +R T+L SL+L S IGD
Sbjct: 394 IGFWGAGALGGSTTLRELDLRCCAIDPYGASALARNTSLASLHLGSNRIGD--------- 444
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
SG R ++ L ++LS I D + LAG SL SLNL +
Sbjct: 445 ---------------SGARAIATSRTLTLLDLSRNNIHDAGAQALAGNGSLTSLNLYGNE 489
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ D G AAL LT L+L RI +GA +L L L++ + G +
Sbjct: 490 VDDDGAAALAHHPRLTSLNLGRNRIGPNGAQHLAKSATLTELDLSENRIGPEGADALSLS 549
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ LT LN+S N T L SL+ N+ + AG + L+
Sbjct: 550 TVLTTLNVSDNAIGEKGARAFAEKSTSLTSLDARNNGMGEAGAKMLE 596
>gi|326679785|ref|XP_002660968.2| PREDICTED: hypothetical protein LOC100332407 [Danio rerio]
Length = 537
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 189/401 (47%), Gaps = 23/401 (5%)
Query: 5 DISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS----QGSSLL 60
++++ + + + R L +LE F C LQ L YP ++ + + + + S L
Sbjct: 111 ELAELLLSHMARERLLRPRTLELFFGCPLQKFVLNCYPYTTNELLRQLRAFTCLKHLSFL 170
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L +TD+GL L + S LQ L+ + C +++D L+H+ GL +LT L+ + ++
Sbjct: 171 NSPL----ITDAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLTFLALDQTK-VS 225
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLS 177
G+ + +G L +L L + L L + +L L+IK SD+ L+
Sbjct: 226 DAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV---SDVSALA 282
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
L NL++L + + V ++ + L L+ L+L G PV A +L + L L
Sbjct: 283 ELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPV-ADGNHTLEIIAGLRLTQLTL 341
Query: 237 --RCQLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
R ++D G SR LE D + D G+ L+ + LK L LS+TQV SGL
Sbjct: 342 PGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGL 401
Query: 294 RHLSGLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 351
+ L L L+ + L T + S G + L L+ + L + Q+ DT + L L
Sbjct: 402 QGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLASTQVGDTVIRRGLVHCPQLL 461
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L+L RITD G +L + L + + G G+T G+ ++
Sbjct: 462 KLNLSRTRITDQGLKFLCRMQ-LSQVNLDGTGVTLVGIANL 501
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 35/317 (11%)
Query: 166 NCI---TDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGC-PVTAAC 220
NC T+ ++ L T LK L S +TD+G++ L L KL LNL C +T +C
Sbjct: 145 NCYPYTTNELLRQLRAFTCLKHLSFLNSPLITDAGLSVLSNLSKLQHLNLSSCSKLTDSC 204
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L ++ L SL +L L++ ++SD G L L+S + LC L
Sbjct: 205 LQHITGLRSLTFLALDQTKVSDAGL-----LLYLQS--------------GSSALCQL-- 243
Query: 281 LELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+ T + S LR L + L +++ T +SD S LA L +L++L+LD + +
Sbjct: 244 -SLNQTAITESTLRVLPASVPQLRMLSIKHTKVSDVS--ALAELKNLQTLHLDGTGVQEN 300
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG---LTDAGVKHIKDLS 396
L L S L+ L L G + D G L LR ++ G +TD+G+ + +
Sbjct: 301 SLQCLASHPSLSALSLAGIPVAD-GNHTLEIIAGLRLTQLTLPGRHSVTDSGLSFLSRQT 359
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L L+L+ LTD + +S +T L L++SN++++ +GL+ L LK L+ L L+
Sbjct: 360 LLLELDLTDYTQLTDHGITQLSSMTRLKKLSLSNTQVSDSGLQGLIRLKELQELCLDRTA 419
Query: 457 VTANDIKRLQSRDLPNL 473
VT+ + L + LP+L
Sbjct: 420 VTSRGVAALITH-LPHL 435
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 162/329 (49%), Gaps = 19/329 (5%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++AF L +L L+ T GL L L KL+ LN+ C+ +TDS ++ ++GL +L
Sbjct: 158 LRAFTCLKHLSFLNSPLIT--DAGLSVLSNLSKLQHLNLSSCSKLTDSCLQHITGLRSLT 215
Query: 184 SLQISCSKVTDSG-IAYLK-GLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQL 240
L + +KV+D+G + YL+ G L L+L +T + L L A + L L++ ++
Sbjct: 216 FLALDQTKVSDAGLLLYLQSGSSALCQLSLNQTAITESTLRVLPASVPQLRMLSIKHTKV 275
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
SD + L NL++L+LD G+ + L L +L L L+ V + G L +
Sbjct: 276 SD--VSALAELKNLQTLHLDGTGVQENSLQCLASHPSLSALSLAGIPV-ADGNHTLEIIA 332
Query: 301 NLESINLSFTG---ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L L+ G ++D L L+ L+ D Q+TD G+ L+S+T L L L
Sbjct: 333 GLRLTQLTLPGRHSVTDSGLSFLSRQTLLLELDLTDYTQLTDHGITQLSSMTRLKKLSLS 392
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLE 415
+++DSG L K L+ L + +T GV I L L ++ L+ + + D +
Sbjct: 393 NTQVSDSGLQGLIRLKELQELCLDRTAVTSRGVAALITHLPHLQVMGLA-STQVGDTVIR 451
Query: 416 LISGLTG---LVSLNVSNSRITSAGLRHL 441
GL L+ LN+S +RIT GL+ L
Sbjct: 452 --RGLVHCPQLLKLNLSRTRITDQGLKFL 478
>gi|290993851|ref|XP_002679546.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284093163|gb|EFC46802.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 385
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 6/303 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L L I W N I K +S L L L+I+ ++ G + L +LT LN+
Sbjct: 86 LQQLTRLVISW-NRIGIEGAKAISQLKQLTELEIN--QIGLEGTKIISELNQLTSLNIAN 142
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ +S + L L++ QL +G + +L L +L++ + IG G + L
Sbjct: 143 NKMGKQGAKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSVFNNVIGFRGAMLLR 202
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ L L +S +G G + +S L NL +NLSF IS + ++ L L LN++
Sbjct: 203 KMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFNSISYVGAQFISKLPKLTELNMNQ 262
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI 392
+ + G+ ++ + LT+L L RI + G ++ K LR L++C + DAG K +
Sbjct: 263 NDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQLRILKLCENNIGDAGAKFL 322
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLT 451
L LT L+L N N+ + + IS + L L + + I G + + + LK L+
Sbjct: 323 ITLEKLTDLSLYSN-NIGYEGAKAISTMKALTHLRIHGNPIGIEGAKEIYEQLKELKEYC 381
Query: 452 LES 454
L+
Sbjct: 382 LDQ 384
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 144/319 (45%), Gaps = 33/319 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+S + + G + L L+ N QI G + + L+ LTSL+ NN + QG
Sbjct: 94 ISWNRIGIEGAKAISQLKQLTELEIN---QIGLEGTKIISELNQLTSLNIA-NNKMGKQG 149
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
K + + L KLD+ G+ ++ L KL +L++ + N I L +T L
Sbjct: 150 AKYISEMKQLTKLDIGTNQLGVEGVQYIRKLDKLTALSV-FNNVIGFRGAMLLRKMTQLT 208
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS + + D G ++ L L +LNL +S+S +G+ F
Sbjct: 209 ELNISTNAIGDVGAKFVSDLPNLAILNL--------SFNSISYVGAQF------------ 248
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNL 302
S+L L LN++ +G+EG+ ++G+ +L L L T++ G++ +S L L
Sbjct: 249 ----ISKLPKLTELNMNQNDLGNEGVKFISGIISLTNLSLQTTRIDEHGVKFISEKLKQL 304
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ L I D + L L L L+L + I G A++++ LTHL + G I
Sbjct: 305 RILKLCENNIGDAGAKFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPIGI 364
Query: 363 SGAAYLRNFKNLRSL-EIC 380
GA + ++ L+ L E C
Sbjct: 365 EGAKEI--YEQLKELKEYC 381
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 50 DVIASQGSSLL-------SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
+VI +G+ LL +++S + + D G + D NL L+ +F IS G + +
Sbjct: 191 NVIGFRGAMLLRKMTQLTELNISTNAIGDVGAKFVSDLPNLAILNLSFN-SISYVGAQFI 249
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI--HGGLVNLKGLMKLESL 160
L LT L+ +N+ + +G+K +G+I+L L L+ TRI HG + L +L L
Sbjct: 250 SKLPKLTELNMNQND-LGNEGVKFISGIISLTNLSLQ-TTRIDEHGVKFISEKLKQLRIL 307
Query: 161 NIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
K C N I D+ K L L L L + + + G + ++ LT L + G P+
Sbjct: 308 --KLCENNIGDAGAKFLITLEKLTDLSLYSNNIGYEGAKAISTMKALTHLRIHGNPI 362
>gi|290972583|ref|XP_002669031.1| predicted protein [Naegleria gruberi]
gi|284082572|gb|EFC36287.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 32/348 (9%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E + + LT L N I M+ + L +LD+ERC G+ L + +L
Sbjct: 18 IEAISEMRQLTKLGI---NGIQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMPQLT 74
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLN + N + D K +S ++ L L I+ +++ G Y+ L +LT L++ + +
Sbjct: 75 SLNGGY-NYLQCGDAKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNNNILS 133
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ L +L LN+ R + D+G S + L +L++ G EG+ ++ L +L
Sbjct: 134 EGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQLNHL 193
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKL---------------- 320
L + ++ +G++ ++ NL S+NL F L +L
Sbjct: 194 IELSIQGNEITINGVKLITEKKNLTSLNLGNIFYDTKTPELSQLVSQMHQLTTLDIENNN 253
Query: 321 ---------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
A + +LK LN+ I GL+ +T LT LT L++ G +I D GA + +
Sbjct: 254 IGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEGAKIVSSM 313
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
K L L I L + G + I ++ LT L +S N + +K +E+I G
Sbjct: 314 KQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSN-RIGEKQVEMICG 360
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 143/303 (47%), Gaps = 24/303 (7%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + S L LD N +I G +++ L+ LT L NN I ++G K L NLVKL
Sbjct: 91 ISEMSKLTKLDINTN-EIGTEGAKYISTLNQLTELDIGNNN-ILSEGAKFIRNLKNLVKL 148
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ER G + + +L +L+I + N +K +S L +L L I +++T +G
Sbjct: 149 NVERNNIGDEGANYISEMKQLTALDIGF-NMFGFEGIKAISQLNHLIELSIQGNEITING 207
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
+ + + LT LNL G++FY + +LS + S++ L +
Sbjct: 208 VKLITEKKNLTSLNL----------------GNIFY-DTKTPELS----QLVSQMHQLTT 246
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L++++ IG E L + NLK L ++ + GL H++ LT L S+N+ I D
Sbjct: 247 LDIENNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNVCGNQIDDEG 306
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++ + L LN++ + + G + + LT L + RI + + KNLR
Sbjct: 307 AKIVSSMKQLLKLNIEENFLNEGGCETIIEMPQLTQLYISSNRIGEKQVEMICGKKNLRD 366
Query: 377 LEI 379
+ I
Sbjct: 367 IRI 369
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 12/290 (4%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T S ++ +S + L L I+ + D+ + + + +LT L++E C ++ + L +
Sbjct: 14 TSSSIEAISEMRQLTKLGING--IQDNDMRQIGMMSQLTELDIERCDISGEGIKFLIVMP 71
Query: 229 SLFYLN--LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
L LN N Q D + S ++ L L++++ IG EG ++ L L L++ +
Sbjct: 72 QLTSLNGGYNYLQCGD--AKLISEMSKLTKLDINTNEIGTEGAKYISTLNQLTELDIGNN 129
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ S G + + L NL +N+ I D ++ + L +L++ G+ A++
Sbjct: 130 NILSEGAKFIRNLKNLVKLNVERNNIGDEGANYISEMKQLTALDIGFNMFGFEGIKAISQ 189
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS----LTLLN 402
L L L + G IT +G + KNL SL + G D + L S LT L+
Sbjct: 190 LNHLIELSIQGNEITINGVKLITEKKNLTSLNL-GNIFYDTKTPELSQLVSQMHQLTTLD 248
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ +N N+ + L++ + L LN++ + I GL H+ L L SL +
Sbjct: 249 I-ENNNIGPEVANLLAEMKNLKHLNIAFNNIEKEGLSHITQLTQLTSLNV 297
>gi|198432493|ref|XP_002130800.1| PREDICTED: similar to F-box and leucine-rich repeat protein 13
[Ciona intestinalis]
Length = 798
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 214/493 (43%), Gaps = 113/493 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS-NLQSLDFNFC 91
+QDL + GVND+ M IA +LL +++S +++TD L L C N+Q L +C
Sbjct: 321 VQDLNFSECKGVNDEVMRTIAESCPTLLYLNISHTEITDGTLRTLSRCCLNMQYLSLAYC 380
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
+ +D GL ++ +G LT + F ITAQG + A L ++V D+
Sbjct: 381 SKYTDRGLHYMASGKGCRKLTYIDFSGCLQITAQGFRHVAHGCTSLQSIVLNDMPSLTDS 440
Query: 139 ------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK- 191
E+CT NL+ + + S N +TD K L+ L+ L+I ++
Sbjct: 441 CIISLVEKCT-------NLRSVSLIGSPN------LTDMAFKALAQAKKLQKLRIESNQN 487
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+TD+ K L K+ CP +G + ++ R L+D + S L
Sbjct: 488 ITDNT---FKTLGKM-------CPY----------IGHFYVVDCQR--LTDMMLKALSPL 525
Query: 252 TNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-F 309
++ LNL C I D G+ + G SG + + +NL+
Sbjct: 526 RSIIVLNLADCVRISDSGVRQMVE--------------GPSG-------SKIREMNLTNC 564
Query: 310 TGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+SD SL ++A SL L L +TD G+ L S+ L H+DL G I D G A
Sbjct: 565 VRVSDVSLLRVAQRCHSLTHLCLCFCEHVTDAGIELLGSMPALLHVDLSGTNIKDQGLAS 624
Query: 368 LRNFKNLRSLEICG-GGLTDAG---------------VKHIKDLSSLTLLNLSQNCN--- 408
L +RS+ + G+TD G V H LS + NL+ C
Sbjct: 625 LGVNSRIRSVVMSECQGITDLGLQKFCQKVTELDTLDVSHCMSLSDAAIKNLAFCCRMLT 684
Query: 409 ---------LTDKTLELISGLTGLVS-LNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK 456
LTD +++ +SG+ + LN+S I+ +++L K K LRSLT+ C+
Sbjct: 685 SLNVAGCPLLTDLSIQYLSGVCHYIHFLNLSGCIHISDRAVKYLRKGCKQLRSLTILYCR 744
Query: 457 -VTANDIKRLQSR 468
+T +RL SR
Sbjct: 745 SITKITAQRLASR 757
>gi|361069065|gb|AEW08844.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137600|gb|AFG49921.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137602|gb|AFG49922.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137604|gb|AFG49923.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137606|gb|AFG49924.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137608|gb|AFG49925.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137610|gb|AFG49926.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137612|gb|AFG49927.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137614|gb|AFG49928.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137616|gb|AFG49929.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137618|gb|AFG49930.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137620|gb|AFG49931.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137622|gb|AFG49932.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137624|gb|AFG49933.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137626|gb|AFG49934.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137628|gb|AFG49935.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137630|gb|AFG49936.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137632|gb|AFG49937.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
gi|383137634|gb|AFG49938.1| Pinus taeda anonymous locus CL1917Contig1_03 genomic sequence
Length = 73
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
QN +LTD LE +SG+T LVSLNVSN+R+T+ GL+HL+PLKNL SL+L++CKVT +IK+
Sbjct: 1 QNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKK 60
Query: 465 LQSRDLPNLVSFR 477
LQ+ LPNL R
Sbjct: 61 LQA-TLPNLAGVR 72
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+TD ++ +SG+T L SL +S ++VT++G+ +L+ L+ LT L+L+ C VT + L A
Sbjct: 5 LTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQA 63
>gi|363728137|ref|XP_003640464.1| PREDICTED: F-box/LRR-repeat protein 14 [Gallus gallus]
Length = 399
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 171/340 (50%), Gaps = 51/340 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 198
++G+ +ESLN+ C +TD+ GL + +IS C ++TDS +
Sbjct: 85 IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 138
Query: 199 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNL 254
YLKGL+ +L L GC L L L LNL C+ LSD G + +T
Sbjct: 139 QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRS 195
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-I 312
+ EG + L L C +LSD L+HL+ GL L +NLSF G I
Sbjct: 196 AA----------EGCLGLEQLTLQDCQKLSDLS-----LKHLARGLGRLRQLNLSFCGGI 240
Query: 313 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL 368
SD L L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+
Sbjct: 241 SDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYI 299
Query: 369 -RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVS 425
+ LRSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L
Sbjct: 300 AQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTG 359
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 360 IDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESEKVR 399
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 163/329 (49%), Gaps = 36/329 (10%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM ++ L+L C + G + + L S
Sbjct: 67 RGIRRVQILSLRRSLSYVIQGMA------DIESLNLSGCYNLTDNGLGHAFVAEISSLRS 120
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 121 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 178
Query: 215 PVTA-------ACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSR-LTNLESLNLDSC- 262
+ A + +A G L L L CQ LSD + +R L L LNL C
Sbjct: 179 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCG 238
Query: 263 GIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRK 319
GI D GL++L+ + +L+ L L S + +G+ HL+ G L +++SF + D SL
Sbjct: 239 GISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 298
Query: 320 LA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLR 375
+A GL L+SL+L + I+D G+ + + GL L++ RITD G + + L
Sbjct: 299 IAQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLT 358
Query: 376 SLEICG-GGLTDAGVKHIKDLSSLTLLNL 403
+++ G +T G++ I L L +LNL
Sbjct: 359 GIDLYGCTRITKRGLERITQLPCLKVLNL 387
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 30/318 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 85 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 144
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 145 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 200
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFS 249
GL++LTL + + ++ L L+ LG L LNL+ C +SD G S
Sbjct: 201 ---------LGLEQLTLQDCQ--KLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLS 249
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESI 305
+++L SLNL SC I D G+++L G L L++S +VG L +++ GL L S+
Sbjct: 250 HMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSL 309
Query: 306 NLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARIT 361
+L ISD G R + + L++LN+ +ITD GL + L+ LT +DL+G RIT
Sbjct: 310 SLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 369
Query: 362 DSGAAYLRNFKNLRSLEI 379
G + L+ L +
Sbjct: 370 KRGLERITQLPCLKVLNL 387
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L GL
Sbjct: 88 MADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKGLEV 146
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 147 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 202
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LNL
Sbjct: 203 LEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRS 261
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++ I
Sbjct: 262 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGI 321
Query: 463 KRL 465
R+
Sbjct: 322 NRM 324
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAF 127
++D+GL+HL S+L+SL+ C ISD G+ HL G L+ L + + Q +
Sbjct: 240 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 299
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
A GL L L L C G+ + + + L +LNI C ITD ++ ++ L+ L
Sbjct: 300 AQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTG 359
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL 211
+ + C+++T G+ + L L +LNL
Sbjct: 360 IDLYGCTRITKRGLERITQLPCLKVLNL 387
>gi|209154162|gb|ACI33313.1| F-box/LRR-repeat protein 14 [Salmo salar]
Length = 403
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 184/380 (48%), Gaps = 61/380 (16%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKL 157
H RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 69 HTRGIKKVQILSLRRSLSYVIQGMP------NIESLNLCGCFNLTDNGLGHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ S +T++G+ + GL KL LNL C
Sbjct: 123 RILNLSLCKPITDSSLGRIAQYLKNLEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+SD G + +T + EG + L
Sbjct: 183 R-----------------------HVSDVGIGHLAGMTRSAA----------EGCLFLEQ 209
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GL NL+ +NLSF G ISD + L+ ++ L SLNL
Sbjct: 210 LTLQDCQKLTDLS-----LKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLR 264
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F +I D AY+ + L+SL +C ++D
Sbjct: 265 SCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 324 GINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQL 383
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 384 PCLKVLNLGLWQMTESEKVR 403
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 46/326 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NL 133
++ N++SL+ C ++D GL H ++ + +L L+ IT + A + NL
Sbjct: 89 IQGMPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLGRIAQYLKNL 148
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L + I G L+ GL KL+SLN++ C ++D + L+G+T L+
Sbjct: 149 EVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFLE 208
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ KGL L +LNL C +S
Sbjct: 209 QLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCG-----------------------GIS 245
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S +T+L SLNL SC I D G+++L G L L++S ++G L +++
Sbjct: 246 DSGMIHLSNMTHLWSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQ 305
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLD 354
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +D
Sbjct: 306 GLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGID 365
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEI 379
L+G +IT G + L+ L +
Sbjct: 366 LYGCTKITKRGLERITQLPCLKVLNL 391
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K +NL+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLANLKVLNLSFCGGISDSGMIHLSNMTHLWSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 397
Query: 242 D 242
+
Sbjct: 398 E 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + ++ L L C ++D+ +G R L N
Sbjct: 92 MPNIESLNLCGCFNLTDNGLGHAFVQDIPSLRILNLSLCKPITDSSLG----RIAQYLKN 147
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHL 353
LE + L + I++ L +A GL LKSLNL + R ++D G+ L +T G L
Sbjct: 148 LEVLELGGLSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLFL 207
Query: 354 DLFG----ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ ++TD ++ + NL+ +L CGG ++D+G+ H+ +++ L LNL
Sbjct: 208 EQLTLQDCQKLTDLSLKHVSKGLANLKVLNLSFCGG-ISDSGMIHLSNMTHLWSLNLRSC 266
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I
Sbjct: 267 DNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 326
Query: 464 RL--QSRDLPNL 473
R+ Q +L L
Sbjct: 327 RMVRQMHELKTL 338
>gi|343420998|emb|CCD18943.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 1355
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 196/382 (51%), Gaps = 38/382 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L D NL++LD +F I+D + L L L +LS IT + + L +L L
Sbjct: 412 LSDFINLRTLDLSFYTGITD--VSPLSMLIRLENLSLSNIAGIT--DVSPLSKLSSLRTL 467
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT I + +L L +LE+LN+ +C IT D+ PLS ++NL SL +S C+ +TD
Sbjct: 468 DLSHCTGI-TDVSSLSKLSRLETLNLMYCTGIT--DVSPLSLMSNLCSLYLSHCTGITD- 523
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ L L +L L+L GC + LS L L LNL C D S+L+ LE
Sbjct: 524 -VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYCTGITD-VSPLSKLSRLE 580
Query: 256 SLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGIS 313
+LNL C GI D ++L NL L LS G + + LS L LE ++LS TGI+
Sbjct: 581 TLNLMYCTGITDVSPLSLMS--NLCSLYLSHCT-GITDVPPLSMLIRLEKLDLSGCTGIT 637
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLR 369
D S L+ LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L
Sbjct: 638 DVS--PLSKLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLS 689
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
NLR+L++ G+TD V + +S+L L LS +TD + +S ++ L SL +
Sbjct: 690 LISNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VSPLSLMSNLCSLYL 745
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
S+ G+ + PL L L
Sbjct: 746 SH----CTGITDVPPLSKLSRL 763
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 143/435 (32%), Positives = 210/435 (48%), Gaps = 83/435 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL +L IT +
Sbjct: 62 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLISNLRTLDLSHCTGIT--DVPP 112
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ LI L KLDL CT I + L L +LE+LN+ +C ITD
Sbjct: 113 LSMLIRLEKLDLSGCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 171
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL SL +S C+ +TD + L L +L L+L GC + L
Sbjct: 172 YCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPL 228
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEG------------LVN 271
S L L LNL C D S+L+ LE+LNL C GI D L+
Sbjct: 229 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMY 287
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTN---------LESINLS-FTGISDGSLRKLA 321
TG+ ++ L L + + S L H +G+T+ LE ++LS TGI+D S L+
Sbjct: 288 CTGITDVSPLSLM-SNLCSLYLSHCTGITDVSPLSMLIRLEKLDLSGCTGITDVS--PLS 344
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSL 377
LS L++LNL + TG+ ++ L+ L+ L+ ++ ITD + L NL SL
Sbjct: 345 KLSRLETLNL----MYCTGITDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSL 398
Query: 378 EICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITS 435
+ G+TD V + D +L L+LS +TD +S L+ L+ L N+S S I
Sbjct: 399 NLMYCTGITD--VSPLSDFINLRTLDLSFYTGITD-----VSPLSMLIRLENLSLSNI-- 449
Query: 436 AGLRHLKPLKNLRSL 450
AG+ + PL L SL
Sbjct: 450 AGITDVSPLSKLSSL 464
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 201/419 (47%), Gaps = 61/419 (14%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL SL IT +
Sbjct: 683 TDVSPLSLI-----SNLRTLDLSHCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSP 733
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ + NL L L CT I + L L +LE+LN+ +C ITD
Sbjct: 734 LSLMSNLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGITDVSPLSLISNLRTLDLS 792
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL SL +S C+ +TD + L L +L LNL C + L
Sbjct: 793 HCTGITDVSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMYC-TGITDVSPL 849
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 283
S L L LNL C D S+L+ LE+LNL C GI D ++L NL L L
Sbjct: 850 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITDVSPLSLMS--NLCSLYL 906
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 341
S G + + LS L+ LE++NL + TGI+D S L+ +S+L++L+L ITD +
Sbjct: 907 SHCT-GITDVSPLSKLSRLETLNLMYCTGITDVS--PLSLISNLRTLDLSHCTGITD--V 961
Query: 342 AALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLT 399
+ L+ ++ L L L ITD L L +L + G+TD V + LS L
Sbjct: 962 SPLSLMSNLCSLYLSHCTGITD--VPPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLE 1017
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
LNL +TD + +S L+ L +LN+ + G+ + PL NL SL L C
Sbjct: 1018 TLNLMYCTGITD--VSPLSKLSRLETLNL----MYCTGITDVSPLSLMSNLCSLYLSHC 1070
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 111/337 (32%), Positives = 162/337 (48%), Gaps = 49/337 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 1037 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVPPLSMLIRLEKLDLSG 1092
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
CT I + L L +LE+LN+ +C ITD +D+ PLS +
Sbjct: 1093 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLM 1151
Query: 180 TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+NL SL +S C+ +TD + L L +L L+L GC + LS L L LNL C
Sbjct: 1152 SNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGC-TGITDVSPLSKLSRLETLNLMYC 1208
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
D S+L+ LE+LNL C GI D L+ NL+ L+LS G + + LS
Sbjct: 1209 TGITD-VSPLSKLSRLETLNLMYCTGITDVS--PLSDFINLRTLDLS-FYTGITDVSPLS 1264
Query: 298 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD-- 354
L E+++LS GI+D S L+ L L L L TG+ ++ L+ L+ L+
Sbjct: 1265 MLIRFENLSLSNIAGITDVS--PLSTLIRLNVLYLSGC----TGITDVSPLSKLSRLETL 1318
Query: 355 --LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAG 388
++ ITD + L NLR+L++ G+TD
Sbjct: 1319 NLMYCTGITD--VSPLSLISNLRTLDLSHCTGITDVS 1353
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 206/449 (45%), Gaps = 98/449 (21%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S L++L+ +C I+D + L +SNL SL IT + + LI L KLDL
Sbjct: 278 SRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGIT--DVSPLSMLIRLEKLDLSG 333
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------------SDMKPLSGL 179
CT I + L L +LE+LN+ +C ITD +D+ PLS +
Sbjct: 334 CTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLMYCTGITDVSPLSLM 392
Query: 180 TNLKSLQ-ISCSKVTD------------------------SGIAYLKGLQKLTLLNLEGC 214
+NL SL + C+ +TD S ++ L L+ L+L N+ G
Sbjct: 393 SNLCSLNLMYCTGITDVSPLSDFINLRTLDLSFYTGITDVSPLSMLIRLENLSLSNIAG- 451
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNL- 272
+T LS L SL L+L+ C D S+L+ LE+LNL C GI D ++L
Sbjct: 452 -ITDV--SPLSKLSSLRTLDLSHCTGITD-VSSLSKLSRLETLNLMYCTGITDVSPLSLM 507
Query: 273 TGLCNL---KCLELSDTQ----------------VGSSGLRHLSGLTNLESINLSF-TGI 312
+ LC+L C ++D G + + LS L+ LE++NL + TGI
Sbjct: 508 SNLCSLYLSHCTGITDVPPLSMLIRLEKLDLSGCTGITDVSPLSKLSRLETLNLMYCTGI 567
Query: 313 SDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRN 370
+D S L+ LS L++LNL ITD ++ L+ ++ L L L ITD L
Sbjct: 568 TDVS--PLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSM 621
Query: 371 FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L L++ G G+TD V + LS L LNL +TD + +S L+ L +LN+
Sbjct: 622 LIRLEKLDLSGCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNL- 676
Query: 430 NSRITSAGLRHLKPL---KNLRSLTLESC 455
+ G+ + PL NLR+L L C
Sbjct: 677 ---MYCTGITDVSPLSLISNLRTLDLSHC 702
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 166/334 (49%), Gaps = 35/334 (10%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCS 190
NL L L CT I + L L +LE+LN+ +C IT D+ PLS L+ L++L + C+
Sbjct: 3 NLCSLYLSHCTGI-TDVPPLSKLSRLETLNLMYCTGIT--DVSPLSKLSRLETLNLMYCT 59
Query: 191 KVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+TD S ++ + L+ L L + G +T LS + +L L+L+ C D S
Sbjct: 60 GITDVSPLSLISNLRTLDLSHCTG--ITDV--SPLSLISNLRTLDLSHCTGITD-VPPLS 114
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
L LE L+L C GI D L+ L L+ L L G + + LS L+ LE++NL
Sbjct: 115 MLIRLEKLDLSGCTGITDVS--PLSKLSRLETLNLMYCT-GITDVSPLSKLSRLETLNLM 171
Query: 309 F-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGA 365
+ TGI+D S L+ +S+L SL L ITD + L+ L L LDL G ITD
Sbjct: 172 YCTGITDVS--PLSLMSNLCSLYLSHCTGITD--VPPLSMLIRLEKLDLSGCTGITD--V 225
Query: 366 AYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L L +L + G+TD V + LS L LNL +TD + +S L+ L
Sbjct: 226 SPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLETLNLMYCTGITD--VSPLSKLSRLE 281
Query: 425 SLNVSNSRITSAGLRHLKPL---KNLRSLTLESC 455
+LN+ + G+ + PL NL SL L C
Sbjct: 282 TLNL----MYCTGITDVSPLSLMSNLCSLYLSHC 311
>gi|414076287|ref|YP_006995605.1| hypothetical protein ANA_C11003 [Anabaena sp. 90]
gi|413969703|gb|AFW93792.1| leucine-rich repeat-containing protein [Anabaena sp. 90]
Length = 474
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 151/274 (55%), Gaps = 26/274 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LT L SL +S +K++D I L L KLT L L ++ + SLS L L
Sbjct: 98 SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNLTKLTSLGLSKNKISD--IKSLSNLTKL 153
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L Q+SD S LT L SL+L I D + L+ L NL L L ++
Sbjct: 154 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLNLVGNKI-- 207
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S ++ LS LT L S+ LS ISD ++ L+ ++L L+L QI+DT L++LT L
Sbjct: 208 SDIKPLSNLTKLTSLGLSKNKISD--IKSLSNFTNLTKLDLVGNQISDT--TPLSNLTKL 263
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LDL+G +I+D L N NL L + G + + +K + +L++LT L LS N ++
Sbjct: 264 TSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLN-QIS 318
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D ++ +S LT L L++ ++I+ +KPL
Sbjct: 319 D--IKPLSNLTNLTYLDLWGNKIS-----DIKPL 345
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 208/436 (47%), Gaps = 82/436 (18%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN---LTS 110
SQ + +L+ +L+ ++++ + +K SNL L + +S + ++ LSN LTS
Sbjct: 78 SQANQILT-NLTSLGLSENKISDIKPLSNLTKLT---SLGLSKNKISDIKSLSNLTKLTS 133
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L +N +K+ + L L KLDL L L KL SL++ W N I
Sbjct: 134 LGLSKNK---ISDIKSLSNLTKLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI-- 185
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLS LTNL L + +K++D I L L KLT L L ++ + SLS +L
Sbjct: 186 SDIKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLSKNKISD--IKSLSNFTNL 241
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L Q+SD S LT L SL+L I D + L+ L NL L L Q+
Sbjct: 242 TKLDLVGNQISD--TTPLSNLTKLTSLDLWGNQISD--IKPLSNLTNLTFLILWGNQI-- 295
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S ++ LS LTNL S+ LS ISD + L++LT L
Sbjct: 296 SNIKPLSNLTNLTSLTLSLNQISD--------------------------IKPLSNLTNL 329
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--------------------AGVK 390
T+LDL+G +I+D L N NL L + ++D + +K
Sbjct: 330 TYLDLWGNKISD--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIK 387
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ L++LT L LS+N ++D ++ +S LT L SL +S ++I+ +KPL NL +L
Sbjct: 388 PLSSLTNLTFLILSKN-QISD--IKPLSNLTNLTSLGLSENKIS-----DIKPLSNLTNL 439
Query: 451 T-LESCKVTANDIKRL 465
T L + +DIK L
Sbjct: 440 TYLSLWENPISDIKPL 455
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 160/327 (48%), Gaps = 49/327 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFR 114
+ L S+DL G+ ++D +K SNL +L F + +ISD ++ L L+ LTSL
Sbjct: 173 TKLTSLDLWGNQISD-----IKPLSNLTNLTFLNLVGNKISD--IKPLSNLTKLTSLGLS 225
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+N +K+ + NL KLDL L L KL SL++ W N I SD+K
Sbjct: 226 KNK---ISDIKSLSNFTNLTKLDL--VGNQISDTTPLSNLTKLTSLDL-WGNQI--SDIK 277
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
PLS LTNL L + +++ S I L L LT L L ++ + LS L +L YL+
Sbjct: 278 PLSNLTNLTFLILWGNQI--SNIKPLSNLTNLTSLTLSLNQISD--IKPLSNLTNLTYLD 333
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD--------------------EGLVNLTG 274
L ++SD + S LTNL L L S I D + L+
Sbjct: 334 LWGNKISD--IKPLSNLTNLTYLYLLSNKISDIKPLSNLTNLTLLFLSLNQISDIKPLSS 391
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L NL L LS Q+ S ++ LS LTNL S+ LS ISD ++ L+ L++L L+L
Sbjct: 392 LTNLTFLILSKNQI--SDIKPLSNLTNLTSLGLSENKISD--IKPLSNLTNLTYLSLWEN 447
Query: 335 QITDTGLAALTSLTGLTHLDLFGARIT 361
I+D + L++LT LT L L+ T
Sbjct: 448 PISD--IKPLSNLTNLTELYLWENPFT 472
>gi|198456933|ref|XP_001360491.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
gi|198135799|gb|EAL25066.2| GA22149 [Drosophila pseudoobscura pseudoobscura]
Length = 529
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 193 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 234
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 235 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLENLELGGCCNITNT 294
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 295 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHLGLQDCQRLSDEA 354
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 355 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 414
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 415 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMVKIAKSLQELENLNIGQ 474
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 475 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 523
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 161/319 (50%), Gaps = 37/319 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 223 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLEN 282
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 283 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEHL 342
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKL 320
G+ D C LSD +G H++ GLT+L+SINLSF ++D L+ L
Sbjct: 343 GLQD-------------CQRLSDEALG-----HIAQGLTSLKSINLSFCVSVTDSGLKHL 384
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
A + L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRS
Sbjct: 385 ARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRS 444
Query: 377 LEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRI 433
L + +TD G VK K L L LN+ Q +TDK L+ L LT L ++++ +++
Sbjct: 445 LSLNQCQITDQGMVKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQL 504
Query: 434 TSAGLRHLKPLKNLRSLTL 452
+S G+ + L L+ L L
Sbjct: 505 SSKGIDIIMKLPKLQKLNL 523
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L NLE
Sbjct: 227 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLENLEL 285
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------GLTH 352
N++ TG+ L GL L+ LNL + I+D G+ L + L H
Sbjct: 286 GGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEH 341
Query: 353 LDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 342 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 400
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 401 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 453
>gi|299065269|emb|CBJ36437.1| leucine-rich-repeat type III effector protein (GALA8) [Ralstonia
solanacearum CMR15]
Length = 524
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 200/442 (45%), Gaps = 20/442 (4%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPG------VNDKWMDVIASQGS 57
R IS ++ N + + +T +++ L L G YP V + + + + +
Sbjct: 48 RSISHELHN--ITNATITGLTIT--DPSGLNRLSRGDYPKLQSVRLVGNFTVQDLKALPA 103
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLS---NLTSL 111
S+ +DLSG + T S + L L + I D G+ + R L+ LTSL
Sbjct: 104 SVRHIDLSGCNATSSTSATSVAGLKYLAKLPITSLV-IQDAGMTSVGARALAASDTLTSL 162
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R N IT G +A A L L+L+ T G L L +LN++ N I D+
Sbjct: 163 DLR-GNKITDLGAQALATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLR-GNKIEDA 220
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
+ L+ T L SL ++ +G+ L + LT LNL G + A +L+A +L
Sbjct: 221 GAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLT 280
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L+L+ ++ D G + L SL +D C IG G L +L L +S VG +
Sbjct: 281 TLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISHNPVGDA 340
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G + L+ L SI I + LA SL SL+LDA QI D G AL + LT
Sbjct: 341 GAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALATSNTLT 400
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L++ I D G L + L SL++ + V+ + + +LT LN+S N N+ D
Sbjct: 401 SLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSGN-NIGD 459
Query: 412 KTLELISGLTGLVSLNVSNSRI 433
+L++ L SLNV SRI
Sbjct: 460 AGAQLLAANRSLTSLNVCWSRI 481
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 164/349 (46%), Gaps = 3/349 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DL G+ +TD G L L +L+ + I G + L LT+L+ R N
Sbjct: 158 TLTSLDLRGNKITDLGAQALATSRTLTTLNLDTNT-IGAKGAQALAASRTLTTLNLR-GN 215
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L L E C G+ L L +LN+ N I D+ + L+
Sbjct: 216 KIEDAGAQALAASTTLTSLSAEGCRIGLAGVQALAASRSLTTLNLA-GNNIDDAGAQALA 274
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L +L +S +K+ D+G L + L L ++ C + AA +L+ SL LN++
Sbjct: 275 ASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCEIGAAGAQALATSDSLAALNISH 334
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D G + + L S+ C IG G L +L L+L Q+G G + L+
Sbjct: 335 NPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDANQIGDDGAQALA 394
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L S+N+ + I D ++ LA L+SL++ +I T + AL LT L++ G
Sbjct: 395 TSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALAENCTLTSLNVSG 454
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
I D+GA L ++L SL +C + DAG + SLT L++S N
Sbjct: 455 NNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSVN 503
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 3/322 (0%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++L G+ + D+G L + L SL C +I G++ L +LT+L+ NN
Sbjct: 206 TLTTLNLRGNKIEDAGAQALAASTTLTSLSAEGC-RIGLAGVQALAASRSLTTLNLAGNN 264
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I G +A A L LDL G + L L SL + C I + + L+
Sbjct: 265 -IDDAGAQALAASRTLTTLDLSANKIGDAGALALAASRTLASLEVDHCE-IGAAGAQALA 322
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
+L +L IS + V D+G L + LT + + C + AA +L+A SL L+L+
Sbjct: 323 TSDSLAALNISHNPVGDAGAQALAICRTLTSIKAKDCQIGAAGAQALAASDSLTSLDLDA 382
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
Q+ DDG + + L SLN+ IGD G+ L L+ L++SD ++G + ++ L+
Sbjct: 383 NQIGDDGAQALATSNTLTSLNVRYNTIGDLGVQALAANRLLESLDVSDNKIGITSVQALA 442
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L S+N+S I D + LA SL SLN+ +I D G AL + LT LD+
Sbjct: 443 ENCTLTSLNVSGNNIGDAGAQLLAANRSLTSLNVCWSRIGDAGALALAANRSLTSLDVSV 502
Query: 358 ARITDSGAAYLRNFKNLRSLEI 379
RI ++GA L + L SL++
Sbjct: 503 NRIGEAGARALVANRFLVSLKM 524
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 26/270 (9%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S S + +G+ YL L +T L ++ +T+ +L+A +L L+L +++D G +
Sbjct: 118 STSATSVAGLKYLAKL-PITSLVIQDAGMTSVGARALAASDTLTSLDLRGNKITDLGAQA 176
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ L +LNLD+ IG +G L L L L ++ +G + L+ T L S++
Sbjct: 177 LATSRTLTTLNLDTNTIGAKGAQALAASRTLTTLNLRGNKIEDAGAQALAASTTLTSLSA 236
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
I ++ LA SL +LNL I D G AL + LT LDL +I D+GA
Sbjct: 237 EGCRIGLAGVQALAASRSLTTLNLAGNNIDDAGAQALAASRTLTTLDLSANKIGDAGALA 296
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L + L SLE+ +C + + ++ L +LN
Sbjct: 297 LAASRTLASLEV-------------------------DHCEIGAAGAQALATSDSLAALN 331
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+S++ + AG + L + L S+ + C++
Sbjct: 332 ISHNPVGDAGAQALAICRTLTSIKAKDCQI 361
>gi|48096980|ref|XP_393659.1| PREDICTED: f-box/LRR-repeat protein 14 [Apis mellifera]
gi|380017700|ref|XP_003692785.1| PREDICTED: F-box/LRR-repeat protein 14-like [Apis florea]
Length = 481
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 140/256 (54%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 242 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 284
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 285 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 344
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC V+D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 345 LNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 404
Query: 241 SDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 296
SD+G C+ L +LE+LN+ C + D+GL + + +LKC++L T++ ++GL +
Sbjct: 405 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 464
Query: 297 SGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 465 MKLPQLSTLNLGLWHV 480
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 162/330 (49%), Gaps = 55/330 (16%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 203
LKG+ LE+LN+ C ITD+ + T L L +S C +V+D + YLK L
Sbjct: 173 LKGVPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLGRIVQYLKNL 232
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSRLTNLESLNLDS 261
+ L L GC C +++ G C ++ L L+ L+L S
Sbjct: 233 EH---LELGGC-----------------------CNITNGGLLCIAWN-LKKLKRLDLRS 265
Query: 262 CG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF- 309
C + D G+ +L G+ L+ L L D Q + LRH+S GLT L+SINLSF
Sbjct: 266 CWQVSDLGIAHLAGVNREAAGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFC 325
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAA 366
I+D L+ LA +SSL+ LNL + ++D G+A L + ++ LD+ F +I D
Sbjct: 326 VCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALV 385
Query: 367 YL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGL 423
++ + NL+ L + ++D G+ K K L L LN+ Q LTDK L I+ + L
Sbjct: 386 HISQGLFNLKLLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHL 445
Query: 424 VSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+++ +RI++ GL + L L +L L
Sbjct: 446 KCIDLYGCTRISTNGLERIMKLPQLSTLNL 475
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 39/242 (16%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + + G +L LS D ++D L H+ +
Sbjct: 263 LRSCWQVSDLGIAHLAGVNRE------AAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 316
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + ++ GM A
Sbjct: 317 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNVSDIGMAYLA-------------- 362
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 363 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 413
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ +L L +L
Sbjct: 414 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 473
Query: 258 NL 259
NL
Sbjct: 474 NL 475
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 123/244 (50%), Gaps = 36/244 (14%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN-----LTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ NLE+LNL C I D GL+N T L L C ++SD +G R + L N
Sbjct: 176 VPNLEALNLSGCYNITDAGLINAFCQEYTTLTELNLSLCKQVSDISLG----RIVQYLKN 231
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE + L I++G L +A L LK L+L + Q++D G+A L + L
Sbjct: 232 LEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNLAL 291
Query: 351 THLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLS 404
HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL LNL
Sbjct: 292 EHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLRELNLR 348
Query: 405 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 461
N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++
Sbjct: 349 SCDNVSDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEG 408
Query: 462 IKRL 465
I ++
Sbjct: 409 ICKI 412
>gi|347547841|ref|YP_004854169.1| putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346980912|emb|CBW84831.1| Putative internalin A [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 798
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 183/397 (46%), Gaps = 63/397 (15%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+N+ LDF++ QI+D L L L+ LTSL N ++ L L L +
Sbjct: 98 NNVTQLDFSYN-QITD--LTPLANLTKLTSLVMNNNQIADLTPLQNLTSLTELT-LFYNK 153
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKPLSGLTNLKSLQISCSKVTDSGI 197
T + L NL L L ITD SD+ P+ LTNL+ L I +KVTD I
Sbjct: 154 ITDV-APLANLTNLTNL---------AITDNEISDVTPIGNLTNLEGLSIG-NKVTD--I 200
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L L KL LNL +T + ++ L +L L+L+ Q SD LTNL L
Sbjct: 201 KPLANLTKLERLNLSRNKITD--ISPVAKLINLQSLSLDNNQFSD--LTPLGILTNLTEL 256
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
+L S + D G L L NLK L L D Q+ S L +S LTNL +NLS ISD L
Sbjct: 257 SLYSNHLSDIG--TLASLTNLKKLNLMDNQI--SNLAPISNLTNLTDLNLSTNQISD--L 310
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
+ ++ L++L L + Q+ D ++ ++SL L L L+ +I+D + L N L+ L
Sbjct: 311 KPISNLTNLTVLQVPTNQLED--ISPISSLPNLEFLTLYTNQISD--LSPLENLTKLKQL 366
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++D V I +L+SL L+ N IS LT L L +R+T G
Sbjct: 367 FFYDNKVSD--VSPIANLTSLQELSAGTNQ---------ISDLTPLAKL----TRLTQLG 411
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L + KVT+ +K + +PN V
Sbjct: 412 L--------------DKQKVTSQPVKYQSNLVVPNAV 434
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 179/382 (46%), Gaps = 63/382 (16%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D S + +TD L L + + L SL N QI+D L L+ L++LT L+ N
Sbjct: 103 LDFSYNQITD--LTPLANLTKLTSLVMNNN-QIAD--LTPLQNLTSLTELTLFYNKITDV 157
Query: 122 QGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ L NL D E T I G L NL+GL N +TD +KPL+ L
Sbjct: 158 APLANLTNLTNLAITDNEISDVTPI-GNLTNLEGL--------SIGNKVTD--IKPLANL 206
Query: 180 TNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T L+ L +S +K+TD S +A L LQ L+L N
Sbjct: 207 TKLERLNLSRNKITDISPVAKLINLQSLSLDN---------------------------N 239
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
Q SD LTNL L+L S + D G L L NLK L L D Q+ S L +S
Sbjct: 240 QFSD--LTPLGILTNLTELSLYSNHLSDIG--TLASLTNLKKLNLMDNQI--SNLAPISN 293
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNL +NLS ISD L+ ++ L++L L + Q+ D ++ ++SL L L L+
Sbjct: 294 LTNLTDLNLSTNQISD--LKPISNLTNLTVLQVPTNQLED--ISPISSLPNLEFLTLYTN 349
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+I+D + L N L+ L ++D V I +L+SL L+ N ++D L ++
Sbjct: 350 QISD--LSPLENLTKLKQLFFYDNKVSD--VSPIANLTSLQELSAGTN-QISD--LTPLA 402
Query: 419 GLTGLVSLNVSNSRITSAGLRH 440
LT L L + ++TS +++
Sbjct: 403 KLTRLTQLGLDKQKVTSQPVKY 424
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 137/296 (46%), Gaps = 52/296 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ L S +++TD + L L KLT L + + A L L L SL L L
Sbjct: 97 LNNVTQLDFSYNQITD--LTPLANLTKLTSLVMNNNQI--ADLTPLQNLTSLTELTLFYN 152
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+++D + LTNL +L I D + ++T + NL LE + ++ L+
Sbjct: 153 KITD--VAPLANLTNLTNL-----AITDNEISDVTPIGNLTNLEGLSIGNKVTDIKPLAN 205
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LT LE +NLS I+D + +A L +L+SL+LD Q +D L L LT LT L L+
Sbjct: 206 LTKLERLNLSRNKITD--ISPVAKLINLQSLSLDNNQFSD--LTPLGILTNLTELSLYSN 261
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++D G L + NL+ L + +++ L IS
Sbjct: 262 HLSDIGT--LASLTNLKKLNLMDNQISN---------------------------LAPIS 292
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
LT L LN+S ++I+ LKP+ NL +LT+ +V N ++ + LPNL
Sbjct: 293 NLTNLTDLNLSTNQIS-----DLKPISNLTNLTV--LQVPTNQLEDISPISSLPNL 341
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 29/267 (10%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY---------LNLNRCQLSDDGCEK 247
+A L G+ L + G V AA + + + + +LF +L + +SD +
Sbjct: 14 LAILVGVGGLYVATSNGTNVEAATISNPTPINTLFTDPALAEVVKTDLGKATVSDTVTQ- 72
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ L + SL D GI + + L N+ L+ S Q+ + L L+ LT L S+ +
Sbjct: 73 -TDLDGITSLEADRKGI--TSIAGVEYLNNVTQLDFSYNQI--TDLTPLANLTKLTSLVM 127
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ I+D L L L+SL L L +ITD +A L +LT LT+L + I+D
Sbjct: 128 NNNQIAD--LTPLQNLTSLTELTLFYNKITD--VAPLANLTNLTNLAITDNEISD--VTP 181
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ N NL L I G +TD +K + +L+ L LNLS+N +TD + ++ L L SL+
Sbjct: 182 IGNLTNLEGLSI-GNKVTD--IKPLANLTKLERLNLSRN-KITD--ISPVAKLINLQSLS 235
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLES 454
+ N++ + L L L NL L+L S
Sbjct: 236 LDNNQF--SDLTPLGILTNLTELSLYS 260
>gi|307215039|gb|EFN89866.1| F-box/LRR-repeat protein 14 [Harpegnathos saltator]
Length = 457
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 141/264 (53%), Gaps = 19/264 (7%)
Query: 68 DVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMK 125
VTD+ L + NL+ L+ C I++ GL + GL L L R ++ QG+
Sbjct: 193 QVTDTSLGRIAQYLKNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIA 252
Query: 126 AFAGL-------INLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPL 176
AGL + L L L+ C R+ L N+ GL L+S+N+ +C CITDS +K L
Sbjct: 253 YLAGLNREADGNLALEHLSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHL 312
Query: 177 SGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFY 232
+ +++L+ L + SC ++D G+AYL +G ++T L++ C A + L +L
Sbjct: 313 ARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKS 372
Query: 233 LNLNRCQLSDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQV 288
L+L+ CQ+SD+G C+ L +LE+LN+ C + D L + + +LKC++L T++
Sbjct: 373 LSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKI 432
Query: 289 GSSGLRHLSGLTNLESINLSFTGI 312
+SGL + L L ++NL +
Sbjct: 433 TTSGLERIMKLPQLSTLNLGLWHV 456
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 165/302 (54%), Gaps = 25/302 (8%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
L G+ NL++L +S C +TD+GI + + L LT+LNL C VT L ++ L +L
Sbjct: 150 LRGVPNLEALNLSGCYNITDTGIMSGFCQELPTLTVLNLSLCKQVTDTSLGRIAQYLKNL 209
Query: 231 FYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLTGL-------CNLKC 280
+L L C +++ G + L L+ L+L SC + D+G+ L GL L+
Sbjct: 210 EHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADGNLALEH 269
Query: 281 LELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 336
L L D Q + LR++S GLT L+SINLSF I+D ++ LA +SSL+ LNL + I
Sbjct: 270 LSLQDCQRLSDEALRNVSLGLTTLKSINLSFCVCITDSGVKHLARMSSLRELNLRSCDNI 329
Query: 337 TDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHI 392
+D G+A L + +T LD+ F +I D ++ + NL+SL + ++D G+ K
Sbjct: 330 SDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGICKIA 389
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSL 450
K L L LN+ Q LTD++L ++ + L +++ ++IT++GL + L L +L
Sbjct: 390 KTLHDLETLNIGQCSRLTDRSLHTMAENMKHLKCIDLYGCTKITTSGLERIMKLPQLSTL 449
Query: 451 TL 452
L
Sbjct: 450 NL 451
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 45/248 (18%)
Query: 251 LTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHLSGL 299
+ NLE+LNL C I D G+ ++G C NL C +++DT +G R L
Sbjct: 153 VPNLEALNLSGCYNITDTGI--MSGFCQELPTLTVLNLSLCKQVTDTSLG----RIAQYL 206
Query: 300 TNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-------G 349
NLE + L I++ L +A GL LK L+L + ++D G+A L L
Sbjct: 207 KNLEHLELGGCCNITNTGLMVIAWGLKKLKRLDLRSCWHVSDQGIAYLAGLNREADGNLA 266
Query: 350 LTHLDLFG-ARITDSGAAYLRN----FKNLRSLE----ICGGGLTDAGVKHIKDLSSLTL 400
L HL L R++D LRN L+S+ +C +TD+GVKH+ +SSL
Sbjct: 267 LEHLSLQDCQRLSDEA---LRNVSLGLTTLKSINLSFCVC---ITDSGVKHLARMSSLRE 320
Query: 401 LNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKV 457
LNL N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C++
Sbjct: 321 LNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 380
Query: 458 TANDIKRL 465
+ I ++
Sbjct: 381 SDEGICKI 388
>gi|383852952|ref|XP_003701989.1| PREDICTED: F-box/LRR-repeat protein 14-like [Megachile rotundata]
Length = 479
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 140/256 (54%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T++GL+ + + L+ LD C Q+SD G+ HL G++ +A
Sbjct: 240 NITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------EA 282
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 283 AGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVCITDSGVKHLAKMSSLRE 342
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 343 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQI 402
Query: 241 SDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 296
SD+G C+ L +LE+LN+ C + D+GL + + +LKC++L T++ ++GL +
Sbjct: 403 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 462
Query: 297 SGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 463 MKLPQLSTLNLGLWHV 478
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 165/333 (49%), Gaps = 61/333 (18%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM-----KPLSGLTNLK-SLQISCSKVTDSG----IAYL 200
L+G+ LE+LN+ C ITD+ + + S LT L SL C +V+D + YL
Sbjct: 171 LRGVPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSL---CKQVSDISLGRIVQYL 227
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSRLTNLESLN 258
K L+ L L GC C +++ G C ++ L L+ L+
Sbjct: 228 KNLEH---LELGGC-----------------------CNITNTGLLCIAWN-LKKLKRLD 260
Query: 259 LDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINL 307
L SC + D G+ +L G+ L+ L L D Q + LRH+S GLT L+SINL
Sbjct: 261 LRSCWQVSDLGIAHLAGVNREAAGGNFALEHLSLQDCQRLSDEALRHISIGLTTLKSINL 320
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDS 363
SF I+D ++ LA +SSL+ LNL + I+D G+A L + ++ LD+ F +I D
Sbjct: 321 SFCVCITDSGVKHLAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQ 380
Query: 364 GAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GL 420
++ + NL+SL + ++D G+ K K L L LN+ Q LTDK L I+ +
Sbjct: 381 ALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESM 440
Query: 421 TGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
L +++ +RI++ GL + L L +L L
Sbjct: 441 KHLKCIDLYGCTRISTNGLERIMKLPQLSTLNL 473
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 36/244 (14%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ NLE+LNL C I D GL+N LT L C ++SD +G R + L N
Sbjct: 174 VPNLEALNLSGCYNITDAGLINAFCQEYSTLTELNLSLCKQVSDISLG----RIVQYLKN 229
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE + L I++ L +A L LK L+L + Q++D G+A L + L
Sbjct: 230 LEHLELGGCCNITNTGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNREAAGGNFAL 289
Query: 351 THLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNLS 404
HL L R++D ++ L+S+ +C +TD+GVKH+ +SSL LNL
Sbjct: 290 EHLSLQDCQRLSDEALRHISIGLTTLKSINLSFCVC---ITDSGVKHLAKMSSLRELNLR 346
Query: 405 QNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAND 461
N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 347 SCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEG 406
Query: 462 IKRL 465
I ++
Sbjct: 407 ICKI 410
>gi|355785801|gb|EHH65984.1| F-box and leucine-rich repeat protein 14 [Macaca fascicularis]
Length = 330
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 176/346 (50%), Gaps = 41/346 (11%)
Query: 154 LMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGLQKL 206
+ +ESLN+ C +TD+ + + + +L++L +S C ++TDS + YLKGL+
Sbjct: 1 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLE-- 58
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG 263
+L L GC L L L LNL C+ LSD G + +T +
Sbjct: 59 -VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA------- 110
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA 321
EG + L L C +L+D L+H+S GLT L +NLSF GISD L L+
Sbjct: 111 ---EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLS 162
Query: 322 GLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
+ SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+S
Sbjct: 163 HMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKS 221
Query: 377 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRI 433
L +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RI
Sbjct: 222 LSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 281
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
T GL + L L+ L L ++T D ++ D L + R
Sbjct: 282 TKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 325
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 167/341 (48%), Gaps = 46/341 (13%)
Query: 81 SNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLD 137
+N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L L+
Sbjct: 2 ANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLE 61
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 62 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 121
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C K+TD + ++ +GL L LLNL C +SD G
Sbjct: 122 QDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GISDAGL 158
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTN 301
S + +L SLNL SC I D G+++L G L L++S +VG L +++ GL
Sbjct: 159 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDG 218
Query: 302 LESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG- 357
L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 219 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 278
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
RIT G + L+ L + +TD+ + D S L
Sbjct: 279 TRITKRGLERITQLPCLKVLNLGLWQMTDSEKEARGDFSPL 319
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 127 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 186
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 187 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 246
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 247 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 306
Query: 242 DDGCEKFSR 250
D EK +R
Sbjct: 307 DS--EKEAR 313
>gi|395538856|ref|XP_003771390.1| PREDICTED: F-box/LRR-repeat protein 14, partial [Sarcophilus
harrisii]
Length = 341
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 181/380 (47%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + +
Sbjct: 9 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAVVQEIGSPRA 62
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL GC
Sbjct: 63 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGC 120
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 121 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 147
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GL L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 148 LTLQDCQKLTDLS-----LKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 202
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L SL C ++D
Sbjct: 203 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDD 261
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 262 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 321
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 322 PCLKVLNLGLWQMTESEKVR 341
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 46/326 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + + +L+ IT + A + L
Sbjct: 27 IQGMANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIAQYLKGL 86
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 87 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLGLE 146
Query: 184 SLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L + C K+TD + ++ +GL L LLNL C +S
Sbjct: 147 QLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCG-----------------------GIS 183
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS- 297
D G S + +L SLNL SC I D G+++L G L L++S +VG L +++
Sbjct: 184 DAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQ 243
Query: 298 GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLD 354
GL L S++ ISD + R + + L++LN+ +ITD GL + L+ LT +D
Sbjct: 244 GLDGLNSLSRCPCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 303
Query: 355 LFG-ARITDSGAAYLRNFKNLRSLEI 379
L+G RIT G + L+ L +
Sbjct: 304 LYGCTRITKRGLERITQLPCLKVLNL 329
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 156 LTDLSLKHISRGLAGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 215
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L SL+ C+ D + + + L++
Sbjct: 216 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGINRMVRQMHGLRT 275
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 276 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 335
Query: 242 D 242
+
Sbjct: 336 E 336
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC-GIGDEGL-------VNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C + D GL + NL C +++D+ +G ++L GL
Sbjct: 30 MANIESLNLSGCYNLTDNGLGHAVVQEIGSPRALNLSLCKQITDSSLGRIA-QYLKGLEV 88
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL R ++D G+ L +T G
Sbjct: 89 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRGCRHLSDVGIGHLAGMTRSAAEGCLG 144
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L ++TD ++ R LR +L CGG ++DAG+ H+ + SL LNL
Sbjct: 145 LEQLTLQDCQKLTDLSLKHISRGLAGLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRS 203
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L L SL+ C ++ + I
Sbjct: 204 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLNSLSRCPCHISDDGI 263
Query: 463 KRL 465
R+
Sbjct: 264 NRM 266
>gi|374850803|dbj|BAL53782.1| hypothetical conserved protein, partial [uncultured planctomycete]
Length = 351
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 131/277 (47%), Gaps = 26/277 (9%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+T + ++ L L+ L ++ S V D + YL L L L+L P+ L + +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTGLKHVGQI 159
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
+L L L +++D+ + LT LE L+L + D+G+ ++ L NLK L ++
Sbjct: 160 RNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDLRCPES- 218
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ + L+ L L ++ LS + ++ + L LS L+SL+L +I D L +T L
Sbjct: 219 LTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQITVL 278
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L HL L ITD+ A + F NL+SL + G ++D+ ++ + + +L LNLS+
Sbjct: 279 SKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLSKTA 338
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+T GL+HL PL
Sbjct: 339 -------------------------VTGEGLQHLTPL 350
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 127/252 (50%), Gaps = 6/252 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+T QG + A L L +L L L L L LE+L++ W + + +K +
Sbjct: 100 LTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAW-TPMKGTGLKHVGQ 158
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ NL+ L ++ +K+ D IA + L KL L+L G VT ++ +S L +L L RC
Sbjct: 159 IRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKDL---RC 215
Query: 239 Q--LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
L+DD + +RL L +L L S + +G+ +L L L+ L+LS T++ L +
Sbjct: 216 PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQI 275
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ L+ LE + LS T I+D + +LKSL LD +I+D+ L + + L L+L
Sbjct: 276 TVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNLS 335
Query: 357 GARITDSGAAYL 368
+T G +L
Sbjct: 336 KTAVTGEGLQHL 347
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+L+ +L+ G K + L L L L + DE L L L +L+ L+L+ T + +G
Sbjct: 93 LDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGTG 152
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L+H+ + NL + L+ T I+D + ++ L+ L+ L+L +TD G+ ++ L L
Sbjct: 153 LKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLKD 212
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L +TD L LR+L + +T GV+ +K LS L L+LS+ + D+
Sbjct: 213 LRC-PESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRT-KIDDR 270
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+ I+ L+ L L +S + IT A + NL+SL L+ K++
Sbjct: 271 ALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKIS 316
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 2/203 (0%)
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
SL+L + +G + L L+ L L+D+ V L++L+ L +LE+++L++T +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWTPMKGT 151
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ + + +L+ L L +I D +A + LT L LDL G +TD G ++ NL+
Sbjct: 152 GLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLGGTLVTDKGMEFVSRLANLK 211
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L C LTD K + L L L LS +C +T + +E + L+ L SL++S ++I
Sbjct: 212 DLR-CPESLTDDATKLLARLVQLRTLCLSSSC-VTSQGVESLKTLSELRSLDLSRTKIDD 269
Query: 436 AGLRHLKPLKNLRSLTLESCKVT 458
L + L L L L +T
Sbjct: 270 RALDQITVLSKLEHLLLSETNIT 292
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 14/256 (5%)
Query: 48 WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
W + ++ +L + L+ S+V D L +L + +L++LD + + GL+H+ + N
Sbjct: 105 WRKI--AELRALRELYLADSNVDDEDLQYLANLGSLETLDLAWT-PMKGTGLKHVGQIRN 161
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCN 166
L L + I + + L L KLDL G LV KG+ + L N+K
Sbjct: 162 LRVL-LLTHTKIADEHIAQIVPLTKLEKLDL------GGTLVTDKGMEFVSRLANLKDLR 214
Query: 167 C---ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +TD K L+ L L++L +S S VT G+ LK L +L L+L + LD
Sbjct: 215 CPESLTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSRTKIDDRALDQ 274
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ L L +L L+ ++D R NL+SL LD I D L + + L+ L L
Sbjct: 275 ITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVGKVHTLERLNL 334
Query: 284 SDTQVGSSGLRHLSGL 299
S T V GL+HL+ L
Sbjct: 335 SKTAVTGEGLQHLTPL 350
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 124/267 (46%), Gaps = 10/267 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSL---DFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
S+DLS + +T G + + L+ L D N + D L++L L +L +L
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLADSN----VDDEDLQYLANLGSLETLDLAWT- 146
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ G+K + NL L L + + L KLE L++ +TD M+ +S
Sbjct: 147 PMKGTGLKHVGQIRNLRVLLLTHTKIADEHIAQIVPLTKLEKLDLG-GTLVTDKGMEFVS 205
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L NLK L+ S +TD L L +L L L VT+ ++SL L L L+L+R
Sbjct: 206 RLANLKDLRCPES-LTDDATKLLARLVQLRTLCLSSSCVTSQGVESLKTLSELRSLDLSR 264
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++ D ++ + L+ LE L L I D + NLK L L T++ S L+ +
Sbjct: 265 TKIDDRALDQITVLSKLEHLLLSETNITDAVAPVIGRFMNLKSLFLDGTKISDSVLQEVG 324
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLS 324
+ LE +NLS T ++ L+ L L+
Sbjct: 325 KVHTLERLNLSKTAVTGEGLQHLTPLA 351
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
SL++ LT G + I +L +L L L+ + N+ D+ L+ ++ L L +L+++ + +
Sbjct: 92 SLDLSHARLTPQGWRKIAELRALRELYLA-DSNVDDEDLQYLANLGSLETLDLAWTPMKG 150
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
GL+H+ ++NLR L L K+ I ++
Sbjct: 151 TGLKHVGQIRNLRVLLLTHTKIADEHIAQI 180
>gi|18568223|gb|AAL75966.1|AF467462_1 PpaB [Danio rerio]
Length = 392
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 180/371 (48%), Gaps = 59/371 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + +LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 66 RGIRRVQTLSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPV 216
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 120 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCR- 178
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G + +T + EG ++L L
Sbjct: 179 ----------------------HVSDVGIGHLAGMTRSAA----------EGCLSLEYLT 206
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA- 333
C +L+D L+H+S GLT L+ +NLSF G ISD + L+ ++SL SLNL +
Sbjct: 207 LQDCQKLTDLS-----LKHISKGLTKLKVLNLSFCGGISDAGMIHLSHMTSLWSLNLRSC 261
Query: 334 RQITDTGLAALTSLT-GLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV- 389
I+DTG+ L T L+ LD+ F +I D A + + L+SL +C ++D G+
Sbjct: 262 DNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACIAQGLYQLKSLSLCSCHISDDGIN 321
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L
Sbjct: 322 RMVRQMHELRTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCL 381
Query: 448 RSLTLESCKVT 458
+ L ++T
Sbjct: 382 KVFNLGLWQMT 392
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 43/283 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 128 ITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGH 187
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G ++L L L+ C ++ L ++ KGL KL+
Sbjct: 188 LAGMTR-----------------SAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKV 230
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T+L SL + SC ++D+GI +L G +L+ L++ C
Sbjct: 231 LNLSFCGGISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKI 290
Query: 218 A----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEG--- 268
AC+ L L L+L C +SDDG + R + L +LN+ C I D+G
Sbjct: 291 GDQSLACIA--QGLYQLKSLSLCSCHISDDGINRMVRQMHELRTLNIGQCVRITDKGLEL 348
Query: 269 ----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L LTG+ C T++ GL ++ L L+ NL
Sbjct: 349 IADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKVFNL 386
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 151/325 (46%), Gaps = 78/325 (24%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 208
+G+ ++++L+++ S + G+ N++SL +S C +TD+G+ A+++ + L +
Sbjct: 66 RGIRRVQTLSLR------RSLSYVIQGMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 119
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGD 266
LNL C Q++D + ++ L NLE L L C I +
Sbjct: 120 LNLSLCK-----------------------QITDSSLGRIAQYLKNLEVLELGGCSNITN 156
Query: 267 EGLVNLT-GLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
GL+ + GL LK L L S V G+ HL+G+T ++G L
Sbjct: 157 TGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLAGMTR---------SAAEGCL------- 200
Query: 325 SLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
SL+ L L D +++TD L ++ GLT L + +L CGG
Sbjct: 201 SLEYLTLQDCQKLTDLSLKHISK--GLTKLKVL-------------------NLSFCGG- 238
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 441
++DAG+ H+ ++SL LNL N++D + L G L L+VS +I L +
Sbjct: 239 ISDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLACI 298
Query: 442 -KPLKNLRSLTLESCKVTANDIKRL 465
+ L L+SL+L SC ++ + I R+
Sbjct: 299 AQGLYQLKSLSLCSCHISDDGINRM 323
>gi|168030611|ref|XP_001767816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680898|gb|EDQ67330.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 628
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 206/443 (46%), Gaps = 62/443 (13%)
Query: 20 LTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
+T+ L + C L+ L L G+ D + +A L +DLS ++V+D GL L
Sbjct: 147 VTDSGLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLASLA 206
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKL 136
+L+ L CI ++D GL LR G +L L+ + +++QG+ G + L +L
Sbjct: 207 LLKHLECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVSSQGIIELTGSSVQLQEL 266
Query: 137 DLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVT 193
+L C I L + + L L+ + + C I DS++ + SG LK L +S C VT
Sbjct: 267 NLSYCKLISNVLFASFQKLKTLQVVKLDGCV-IGDSNLSLIGSGCIELKELSLSKCQGVT 325
Query: 194 DSGIAYL----KGLQKLTL-----------------------LNLEGCPVTAACLDSLSA 226
D+G+ + GLQKL L L +E C + A + L
Sbjct: 326 DAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCTGLLSLRMENCLLVTA--EGLIM 383
Query: 227 LG-SLFY---LNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKC 280
+G S Y L+L C L+D+G + R L L + C I GL ++ C NL+
Sbjct: 384 IGKSCVYLEELDLTDCNLNDNGLKSIGRCRGLRLLKVGYCMDITYAGLASIGATCTNLRE 443
Query: 281 LE------LSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA 333
L+ +SD V + SG L+ +NLS+ + I+D SL LA LS L L L A
Sbjct: 444 LDCYRSVGISDEGVAAIA----SGCKRLKVVNLSYCSSITDASLHSLALLSDLVQLELRA 499
Query: 334 -RQITDTGLAAL-TSLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
QIT G++ + S L LD+ + + D G L R +NLR + + +TDAG+
Sbjct: 500 CSQITSAGISYIGASCKHLRELDVKRCKFVGDHGVLALSRGCRNLRQVNLSYTAVTDAGM 559
Query: 390 KHIKDLS-----SLTLLNLSQNC 407
I ++S L +N++ +C
Sbjct: 560 MAIANMSCIQDMKLVHVNVTSSC 582
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 187/406 (46%), Gaps = 66/406 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ ++ LD + C++++D + L ++ TS AI +G AG +LV+
Sbjct: 53 LRRYPQIECLDLSSCVEVTD---QCLAAVAKFTSSRLISIKAIRTKGF-TIAGFRSLVEC 108
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDS 195
L+ +++ +C + D+++ LS L +L+ L++ SC VTDS
Sbjct: 109 RF------------------LQDVDVTFCTQVGDAEVIALSELRHLQKLKLDSCRDVTDS 150
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSRLTN 253
G++ L + L +L L+ C A+G L+ ++L+ ++SD G + L +
Sbjct: 151 GLSSLSRCKGLRILGLKYCSGLGDFGIQNVAIGCQRLYIIDLSFTEVSDKGLASLALLKH 210
Query: 254 LESLNLDSC-GIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLT-NLES 304
LE L+L SC + D+GL L C KCL +S S G+ L+G + L+
Sbjct: 211 LECLSLISCINVTDKGLSCLRNGCKSLQKLNVAKCLNVS-----SQGIIELTGSSVQLQE 265
Query: 305 INLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NLS+ IS+ L +L+ + LD I D+ L SL G S
Sbjct: 266 LNLSYCKLISNVLFASFQKLKTLQVVKLDGCVIGDSNL----SLIG-------------S 308
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLELIS-GLT 421
G L+ SL C G+TDAGV + + L L+L+ ++TD L+ ++ T
Sbjct: 309 GCIELKEL----SLSKC-QGVTDAGVVGVVTSCTGLQKLDLTCCRDITDTALKAVATSCT 363
Query: 422 GLVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
GL+SL + N +T+ GL + K L L L C + N +K +
Sbjct: 364 GLLSLRMENCLLVTAEGLIMIGKSCVYLEELDLTDCNLNDNGLKSI 409
>gi|320169700|gb|EFW46599.1| protein tyrosine kinase [Capsaspora owczarzaki ATCC 30864]
Length = 1026
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 130/305 (42%), Gaps = 8/305 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG-GLVNLKGLMKLE 158
GLS++T N +T+ AF GL L +LDL + T IH +L L +L
Sbjct: 107 FTGLSSVTQTDLSYNK-LTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLS 165
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N N I +GLT L +L + + T GL L L+L C +T
Sbjct: 166 LTN----NIIRTIPSSAFTGLTALNTLNLGGNLFTAIPANAFTGLSALNYLSLFACLITV 221
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
++ + L +L +L L Q+ + F+ LT L+ L L S I T L L
Sbjct: 222 ISANAFTGLTALTFLTLQSNQILNIPANAFAGLTALQFLYLSSAQITSLSANAFTDLSAL 281
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L+LS + S +GL+ L ++LS+ I+ S GLS+L L L QIT
Sbjct: 282 TQLDLSYNMITSLSANTFTGLSALTRLDLSYNMITSLSANTFTGLSALTQLYLFENQITS 341
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
A LT LT L LF +IT A L LE+ +T + L++L
Sbjct: 342 IPADAFAGLTALTQLFLFENQITSIPADAFAGLTALTQLELSHTRITSISANAFRGLTAL 401
Query: 399 TLLNL 403
T L L
Sbjct: 402 TALYL 406
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 163/373 (43%), Gaps = 40/373 (10%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLV 149
I I L L L LS+ + I+AQ AF GL L LDL R T+I G L
Sbjct: 4 ISIPANAFAGLTALQYL-ELSYNQLTGISAQ---AFTGLTALNYLDLSNNRITKIPGSL- 58
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
GL L +L++++ N IT +GLT+L + + + +T+ GL +T
Sbjct: 59 -FTGLTMLTTLSLQF-NHITSLATNAFTGLTSLTQVTLQNNNITNIVATTFTGLSSVTQT 116
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
+L +T+ ++ + L +L L+L+ Q++ FS LT L L+L + I
Sbjct: 117 DLSYNKLTSLSANAFTGLTALAQLDLSMNQITSIHATAFSDLTALTQLSLTNNII----- 171
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSL 326
+ SS +GLT L ++NL FT I + GLS+L
Sbjct: 172 ----------------RTIPSSAF---TGLTALNTLNLGGNLFTAIPANAF---TGLSAL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L+L A IT A T LT LT L L +I + A L+ L + +T
Sbjct: 210 NYLSLFACLITVISANAFTGLTALTFLTLQSNQILNIPANAFAGLTALQFLYLSSAQITS 269
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
DLS+LT L+LS N +T + +GL+ L L++S + ITS L
Sbjct: 270 LSANAFTDLSALTQLDLSYNM-ITSLSANTFTGLSALTRLDLSYNMITSLSANTFTGLSA 328
Query: 447 LRSLTLESCKVTA 459
L L L ++T+
Sbjct: 329 LTQLYLFENQITS 341
>gi|449269519|gb|EMC80282.1| F-box/LRR-repeat protein 14, partial [Columba livia]
Length = 344
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 170/337 (50%), Gaps = 51/337 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS---------CSKVTDSGIA--- 198
++G+ +ESLN+ C +TD+ GL + +IS C ++TDS +
Sbjct: 19 IQGMADIESLNLSGCYNLTDN------GLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA 72
Query: 199 -YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNL 254
YLKGL+ +L L GC L L L LNL C+ LSD G + +T
Sbjct: 73 QYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRS 129
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-I 312
+ EG + L L C +LSD L+HL+ GL L +NLSF G I
Sbjct: 130 AA----------EGCLGLEQLTLQDCQKLSDLS-----LKHLARGLGRLRQLNLSFCGGI 174
Query: 313 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL 368
SD L L+ +SSL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+
Sbjct: 175 SDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYI 233
Query: 369 -RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVS 425
+ LRSL +C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L
Sbjct: 234 AQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTG 293
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+++ +RIT GL + L L+ L L ++T ++
Sbjct: 294 IDLYGCTRITKRGLERITQLPCLKVLNLGLWEMTESE 330
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 30/318 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ ++++SL+ + C ++D GL H + +S+L SL+ IT + A + L
Sbjct: 19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T +S C
Sbjct: 79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMT--RSAAEGC-- 134
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFS 249
GL++LTL + + ++ L L+ LG L LNL+ C +SD G S
Sbjct: 135 ---------LGLEQLTLQDCQ--KLSDLSLKHLARGLGRLRQLNLSFCGGISDAGLLHLS 183
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESI 305
+++L SLNL SC I D G+++L G L L++S +VG L +++ GL L S+
Sbjct: 184 HMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSL 243
Query: 306 NLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARIT 361
+L ISD G R + + L++LN+ +ITD GL + L+ LT +DL+G RIT
Sbjct: 244 SLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRIT 303
Query: 362 DSGAAYLRNFKNLRSLEI 379
G + L+ L +
Sbjct: 304 KRGLERITQLPCLKVLNL 321
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ ++ESLNL C G+G + ++ L +L C +++D+ +G ++L GL
Sbjct: 22 MADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIA-QYLKGLEV 80
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 81 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 136
Query: 350 LTHLDLFG-ARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L +++D +L R LR L + CGG ++DAG+ H+ +SSL LNL
Sbjct: 137 LEQLTLQDCQKLSDLSLKHLARGLGRLRQLNLSFCGG-ISDAGLLHLSHMSSLRSLNLRS 195
Query: 406 NCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D + L G L L+VS ++ L ++ + L LRSL+L SC ++ I
Sbjct: 196 CDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRSLSLCSCHISDEGI 255
Query: 463 KRL 465
R+
Sbjct: 256 NRM 258
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
++D+GL+HL S+L+SL+ C ISD G+ HL G L+ L + + Q +
Sbjct: 174 ISDAGLLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 233
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
A GL L L L C G+ + + + L +LNI C ITD ++ ++ L+ L
Sbjct: 234 AQGLDGLRSLSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTG 293
Query: 185 LQI-SCSKVTDSGIAYLKGLQKLTLLNL 211
+ + C+++T G+ + L L +LNL
Sbjct: 294 IDLYGCTRITKRGLERITQLPCLKVLNL 321
>gi|348505743|ref|XP_003440420.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oreochromis niloticus]
Length = 403
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 180/380 (47%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDISSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSC 182
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+SD G S +T + EG + L
Sbjct: 183 R-----------------------HVSDVGIGHLSGMTRSAA----------EGCLTLEK 209
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GL L+ +NLSF G ISD + L+ ++ L SLNL
Sbjct: 210 LTLQDCQKLTDL-----SLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLR 264
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL LT LD+ F +I D AY+ + L+SL +C ++D
Sbjct: 265 SCDNISDTGIMHLAMGSLR-LTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 324 GINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQL 383
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 384 PCLKVLNLGLWQMTESERVR 403
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 160/321 (49%), Gaps = 46/321 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ +S+L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C K+TD + ++ KGL KL +LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHISKGLNKLKVLNLSFCG-----------------------GISDAGMI 250
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNL 302
S +T+L SLNL SC I D G+++L G L L++S ++G L +++ GL L
Sbjct: 251 HLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQL 310
Query: 303 ESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 358
+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 311 KSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCT 370
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 371 KITKRGLERITQLPCLKVLNL 391
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 397
Query: 242 D 242
+
Sbjct: 398 E 398
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 34/252 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ ++ESLNL C G+G + +++ L L C +++D+ +G R L N
Sbjct: 92 MPHIESLNLCGCFNLTDNGLGHAFVQDISSLRVLNLSLCKQITDSSLG----RIAQYLKN 147
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE + L + I++ L +A GL LKSLNL + R ++D G+ L+ +T L
Sbjct: 148 LEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLTL 207
Query: 351 THLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 208 EKLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTHLCSLNLRSC 266
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I
Sbjct: 267 DNISDTGIMHLAMGSLRLTGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 326
Query: 464 RL--QSRDLPNL 473
R+ Q +L L
Sbjct: 327 RMVRQMHELKTL 338
>gi|195346821|ref|XP_002039953.1| GM15616 [Drosophila sechellia]
gi|194135302|gb|EDW56818.1| GM15616 [Drosophila sechellia]
Length = 538
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 424 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQ 483
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 484 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 351
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 352 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 394
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 395 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 454
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++
Sbjct: 455 SLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLS 514
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 515 SKGIDIIMKLPKLQKLNL 532
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 34/240 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 236 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 294
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 295 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 409
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 410 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 469
>gi|290990083|ref|XP_002677666.1| predicted protein [Naegleria gruberi]
gi|284091275|gb|EFC44922.1| predicted protein [Naegleria gruberi]
Length = 262
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 8/245 (3%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLE 212
L +L SLNI +C+ D+ PL L +L L I+ + G+ + + LQ+L L++
Sbjct: 5 LKQLNSLNIGYCSV---EDIAPLGQLKDLTCLNINHIPIGLEGLKIIGENLQQLKSLDVT 61
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC--QLSDDGCEKFSRLTNLESLNL-DSCGIG-DEG 268
C +T + L +L L + Q G E S + L+SLN+ +S IG +G
Sbjct: 62 NCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEMKQLKSLNIGNSSDIGGPQG 121
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ L NL L + T + G R +S L +L ++L+ ISD + ++GL +
Sbjct: 122 AKLISSLYNLTSLRMDGTMIEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTD 181
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L++ I D G A+ ++ L L L +I D GA Y+ LRSL +CG +T
Sbjct: 182 LDMARNDIGDEGAKAIATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAVCGNRITPVS 241
Query: 389 VKHIK 393
+++++
Sbjct: 242 IQNLR 246
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHLRGL 105
+ + +I L S+D++ +T+ +++ +NL+SL F Q G+E L +
Sbjct: 43 EGLKIIGENLQQLKSLDVTNCGITNEAAQYIRQLNNLESLTITFVFYQKCLKGVEALSEM 102
Query: 106 SNLTSLSFRRNNAI-TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L SL+ ++ I QG K + L NL L R+ G +
Sbjct: 103 KQLKSLNIGNSSDIGGPQGAKLISSLYNLTSL------RMDGTM---------------- 140
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I D + +S L +L+ L ++ + ++D G + GL+ +T L++ + ++
Sbjct: 141 ---IEDEGARFISELKHLRFLDLTGNNISDEGAKSISGLKHVTDLDMARNDIGDEGAKAI 197
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
+ + L L L+ ++ DDG + +L L SL + CG
Sbjct: 198 ATMNQLKRLILDNNKIGDDGAQYIGKLPQLRSLAV--CG 234
>gi|157865941|ref|XP_001681677.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124975|emb|CAJ02737.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 776
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/412 (22%), Positives = 192/412 (46%), Gaps = 15/412 (3%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQIS---DGGLEHLRGLSNLT 109
S+ +SLL +++ + D+T + +L++L+ Q+S G ++ L+NL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPPEWSSIKSLRTLNLE-GTQVSGTLPPGWSEMKSLTNLE 260
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCI 168
++ ++ + +L L+LE T++ G L + L +LN++
Sbjct: 261 ----LEGTQVSGTLPPGWSSIKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNLE--GTQ 313
Query: 169 TDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ P S + +L SL++ ++V+ + ++ L LNLEG V+ + ++
Sbjct: 314 VSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPQWVSM 373
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
SL LNL Q+S ++ + +L +LNL+ + + + +L LEL TQ
Sbjct: 374 ASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQ 433
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V + S + +L ++NL T +S + ++SL++LNL+ Q++ T + +
Sbjct: 434 VSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEM 493
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L+L G +++ + K+LR+L + G ++ + ++SL LNL +
Sbjct: 494 KSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNL-EGT 552
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
++ S + L SL + ++++ +K+LR+L LE +V+
Sbjct: 553 QVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSG 604
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 188/403 (46%), Gaps = 6/403 (1%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL +++L G+ V+ S ++L++L+ Q+S + +LTSL
Sbjct: 279 SLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE-GTQVSGTLPPGWSEMKSLTSLELE-GT 336
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
++ ++ + +L L+LE T++ G L + L +LN++ ++ S
Sbjct: 337 QVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPQWVSMASLRTLNLE-GTQVSGSLPPEW 394
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ +L++L + ++V+ + ++ LT L LEG V+ S + SL LNL
Sbjct: 395 VSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE 454
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q+S ++ + +L +LNL+ + + + +L LEL TQV +
Sbjct: 455 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 514
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S + +L ++NL T +S + ++SL++LNL+ Q++ T + + LT L+L
Sbjct: 515 SEMKSLRTLNLEGTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELE 574
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G +++ + K+LR+L + G ++ A ++ SLT L L + L+
Sbjct: 575 GTQVSGTLPPRWSEMKSLRTLNLEGTQVSGALPPGWGEMKSLTNLYL-EGTQLSGSLPTE 633
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
G+ L +L + ++++ + L +LR+L LE +V+
Sbjct: 634 WRGMKSLTNLYLEGTQVSGSLPPQWSSLTSLRTLDLEGTQVSG 676
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 199/469 (42%), Gaps = 41/469 (8%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYP----GVNDKWMDVIASQGS 57
+S +F N Y+ L E+ + +R ++DL P + D W SQ
Sbjct: 78 VSVNVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSW-----SQLG 132
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
LLSV LSG V+ + L+ L C HL G +L SL
Sbjct: 133 GLLSVTLSGCGVSGTLPASWGLMVRLRELTVRDC--------RHLTG--SLPSL------ 176
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPL 176
++ L NL KL L R ++ G L + L L I IT +
Sbjct: 177 ---------WSWLPNLQKLVL-RQLQLSGTLPAEWSRVTSLLELEIVAAGDITGTLPPEW 226
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + +L++L + ++V+ + ++ LT L LEG V+ S++ SL LNL
Sbjct: 227 SSIKSLRTLNLEGTQVSGTLPPGWSEMKSLTNLELEGTQVSGTLPPGWSSIKSLRTLNLE 286
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q+S ++ + +L +LNL+ + + + +L LEL TQV +
Sbjct: 287 GTQVSGSLPPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 346
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S + +L ++NL T +S + ++SL++LNL+ Q++ + S+ L L+L
Sbjct: 347 SEMKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGSLPPEWVSMASLRTLNLE 406
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G +++ + K+L SLE+ G ++ ++ SL LNL E
Sbjct: 407 GTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLEGTQVSGSLPPEW 466
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+S + L +LN+ ++++ +K+L SL LE +V+ R
Sbjct: 467 VS-MASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRW 514
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 140/329 (42%), Gaps = 24/329 (7%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ SL S++L G+ V+ + + +L++L+ Q+S +++L +L+
Sbjct: 419 SEMKSLTSLELEGTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSLPPEWVSMASLRTLNL 477
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLNIKWCNCITDSD 172
++ ++ + +L L+LE T++ G L MK L +LN++ ++ S
Sbjct: 478 E-GTQVSGTLPPGWSEMKSLTSLELE-GTQVSGTLPPRWSEMKSLRTLNLE-GTQVSGSL 534
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ +L++L + ++V+ + ++ LT L LEG V+ S + SL
Sbjct: 535 PPEWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPPRWSEMKSLRT 594
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
LNL Q+S + + +L +L L+ + G+ +L L L TQV S
Sbjct: 595 LNLEGTQVSGALPPGWGEMKSLTNLYLEGTQLSGSLPTEWRGMKSLTNLYLEGTQVSGSL 654
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
S LT+L +++L T +S + + + S ++L L+ H
Sbjct: 655 PPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE-------------------H 695
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICG 381
DL G+ + A LR CG
Sbjct: 696 CDLSGSLPPEWSAMPRLRLVGLRGNHFCG 724
>gi|17647819|ref|NP_523812.1| partner of paired, isoform A [Drosophila melanogaster]
gi|194884489|ref|XP_001976275.1| GG20101 [Drosophila erecta]
gi|10441427|gb|AAG17034.1|AF187980_1 Partner of Paired [Drosophila melanogaster]
gi|7291460|gb|AAF46886.1| partner of paired, isoform A [Drosophila melanogaster]
gi|21430560|gb|AAM50958.1| RE01138p [Drosophila melanogaster]
gi|190659462|gb|EDV56675.1| GG20101 [Drosophila erecta]
gi|220947678|gb|ACL86382.1| CG9952-PA [synthetic construct]
gi|220957060|gb|ACL91073.1| ppa-PA [synthetic construct]
Length = 538
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 424 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQ 483
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 484 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 351
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 352 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 394
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 395 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 454
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++
Sbjct: 455 SLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLS 514
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 515 SKGIDIIMKLPKLQKLNL 532
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 34/240 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 236 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 294
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 295 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 409
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 410 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 469
>gi|410907724|ref|XP_003967341.1| PREDICTED: F-box/LRR-repeat protein 14-like [Takifugu rubripes]
Length = 403
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 180/380 (47%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDSGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDM-KPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + K L NL+ L++ CS +T++G+ + GL +L LNL C
Sbjct: 123 RVLNLSLCKQITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSC 182
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+SD G S +T + EG ++L
Sbjct: 183 R-----------------------HVSDVGIGHLSGMTRSAA----------EGCLSLEK 209
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GL L+ +NLSF G ISD + L+ ++ L SLNL
Sbjct: 210 LTLQDCQKLTDLS-----LKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLR 264
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F +I D AY+ + L+SL +C ++D
Sbjct: 265 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDD 323
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 324 GINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQL 383
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T N+ R
Sbjct: 384 PCLKVLNLGLWQMTENERMR 403
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 160/321 (49%), Gaps = 46/321 (14%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCKQITDSSLGKIAEYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C K+TD + ++ KGL KL +LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCG-----------------------GISDVGMI 250
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNL 302
S +T+L SLNL SC I D G+++L G L L++S ++G L +++ GL L
Sbjct: 251 HLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQL 310
Query: 303 ESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 358
+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 311 KSLSLCSCHISDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCT 370
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
+IT G + L+ L +
Sbjct: 371 KITKRGLERITQLPCLKVLNL 391
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 7/182 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDVGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 338 LNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 397
Query: 242 DD 243
++
Sbjct: 398 EN 399
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 139/311 (44%), Gaps = 74/311 (23%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TDSG+ A+++ + L +LNL C
Sbjct: 89 IQGMPHIESLNLCGCFNLTDSGLGHAFVQDIPSLRVLNLSLCK----------------- 131
Query: 233 LNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLEL-SDTQV 288
Q++D K + L NLE L L C I + GL+ + GL LK L L S V
Sbjct: 132 ------QITDSSLGKIAEYLKNLEVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHV 185
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 347
G+ HLSG+T ++G L SL+ L L D +++TD L ++
Sbjct: 186 SDVGIGHLSGMTR---------SAAEGCL-------SLEKLTLQDCQKLTDLSLKHVSK- 228
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
GL L + +L CGG ++D G+ H+ ++ L LNL
Sbjct: 229 -GLNKLKVL-------------------NLSFCGG-ISDVGMIHLSHMTHLCSLNLRSCD 267
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I R
Sbjct: 268 NISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAYIAQGLYQLKSLSLCSCHISDDGINR 327
Query: 465 L--QSRDLPNL 473
+ Q +L L
Sbjct: 328 MVRQMHELKTL 338
>gi|328950290|ref|YP_004367625.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
gi|328450614|gb|AEB11515.1| hypothetical protein Marky_0765 [Marinithermus hydrothermalis DSM
14884]
Length = 462
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 172/355 (48%), Gaps = 35/355 (9%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
+L+++DL G+ + D L L + L+ LD +I+D L L+NLT L
Sbjct: 81 EHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDL-VSNRITD-----LAPLANLTRLKR 132
Query: 114 RR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
NN + Q ++ AGL L +L + R+ L L L +L L + W N +TD
Sbjct: 133 LHLGNNQV--QSLEPLAGLTQLTELRIGN-NRV-ADLAPLADLGRLAVL-VAWRNAVTD- 186
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
++PL+ LT ++ L ++ ++VTD + L L +L L L + A L L+ L L
Sbjct: 187 -LQPLANLTRMRVLSLASNRVTD--LTPLAELAQLDTLFLSENQI--ADLAPLAGLTQLK 241
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L+L+ +++ + +RL L L LD+ I D L L GL NL+ L S+ ++
Sbjct: 242 VLSLDFNRITH--LDPLARLVELTELGLDANQIAD--LTPLAGLTNLQVLSASENRIAD- 296
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L L GL LE + L+F I D S L GL +LK L L+ QI + LA L LT L
Sbjct: 297 -LTPLGGLVRLEQLGLNFNRIRDIS--ALEGLKALKVLELEGNQIVN--LAPLAGLTELR 351
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L RI D L NL LE+ +TD G + L +L ++L +N
Sbjct: 352 VLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLGA--LAQLENLVRVSLVRN 402
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 98/243 (40%), Gaps = 67/243 (27%)
Query: 124 MKAFAGLINL--VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ AGL L + LD R T + L L++L L + N I +D+ PL+GLTN
Sbjct: 231 LAPLAGLTQLKVLSLDFNRITHLDP----LARLVELTELGLD-ANQI--ADLTPLAGLTN 283
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L S +++ D + L GL +L L L
Sbjct: 284 LQVLSASENRIAD--LTPLGGLVRLEQLGL------------------------------ 311
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
F+R+ ++ +L GL LK LEL Q+ L L+GLT
Sbjct: 312 -----NFNRIRDISALE---------------GLKALKVLELEGNQI--VNLAPLAGLTE 349
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + L I+D L L L +L L + +ITD G AL L L + L R+T
Sbjct: 350 LRVLVLGQNRIAD--LTPLGALVNLVQLEVSRNEITDLG--ALAQLENLVRVSLVRNRVT 405
Query: 362 DSG 364
+ G
Sbjct: 406 NLG 408
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 29/156 (18%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L+ L++LN R+I L L L LDL G RI D L + L L++
Sbjct: 61 LARLEALNAAERRIQ--SLEGLEHAVNLVTLDLKGNRIAD--LTPLAELRYLEELDLVSN 116
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA------ 436
+TD + + +L+ L L+L N ++LE ++GLT L L + N+R+
Sbjct: 117 RITD--LAPLANLTRLKRLHLGNN---QVQSLEPLAGLTQLTELRIGNNRVADLAPLADL 171
Query: 437 -----------GLRHLKPLKNL---RSLTLESCKVT 458
+ L+PL NL R L+L S +VT
Sbjct: 172 GRLAVLVAWRNAVTDLQPLANLTRMRVLSLASNRVT 207
>gi|195487977|ref|XP_002092120.1| GE11843 [Drosophila yakuba]
gi|194178221|gb|EDW91832.1| GE11843 [Drosophila yakuba]
Length = 533
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 197 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 238
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 239 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 298
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 299 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 358
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 359 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 418
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 419 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQ 478
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 479 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 527
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 227 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 286
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 287 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 346
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 347 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 389
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 390 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 449
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++
Sbjct: 450 SLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLS 509
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 510 SKGIDIIMKLPKLQKLNL 527
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 34/240 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 231 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 289
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 290 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 345
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 346 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 404
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 405 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 464
>gi|168703296|ref|ZP_02735573.1| hypothetical protein GobsU_27441 [Gemmata obscuriglobus UQM 2246]
Length = 635
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +++ + + ++ ++I+ VT +G+ +L L KL L ++ CPV + + L+A
Sbjct: 228 TDDELRVFTSIREVEHVRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS--IAPLTACP 285
Query: 229 SLFYLNL-------NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+L L + R ++D G +LTNL L LD C IG + L L L L+ L
Sbjct: 286 NLTELVITAEAGTERRAVVNDTGTAGLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSL 345
Query: 282 EL---SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
EL + + L L+GL LE + L I +L + L +L++L L D
Sbjct: 346 ELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLFGEGD 403
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+ L LT L L L G +TD +LR ++LR+L I +T G
Sbjct: 404 SEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATGA 454
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 107/235 (45%), Gaps = 21/235 (8%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-------VTDSGIA 198
GL +L L KL++L I +C DS + PL+ NL L I+ V D+G A
Sbjct: 254 AGLYHLPRLSKLKTLEID--SCPVDS-IAPLTACPNLTELVITAEAGTERRAVVNDTGTA 310
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC---QLSDDGCEKFSRLTNLE 255
L+ L L L L+ C + L L+AL L L L +S + + L LE
Sbjct: 311 GLEKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELE 370
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L I L + L L+ L LS G S RHL+ LTNL + L+ ++D
Sbjct: 371 KLTLHP--IPPWALEYIGPLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLTGPAVTDC 428
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+L L L SL++L++ +T TG ALT L H I+D+ A+ N
Sbjct: 429 ALGHLRTLRSLRTLHISESAVTATG--ALT----LAHQLPAAKIISDTVVAWSPN 477
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------VGSSGLRHL 296
G RL+ L++L +DSC + + + LT NL L ++ V +G L
Sbjct: 255 GLYHLPRLSKLKTLEIDSCPV--DSIAPLTACPNLTELVITAEAGTERRAVVNDTGTAGL 312
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL---DARQITDTGLAALTSLTGLTHL 353
LTNL + L + I +LR+LA L L+SL L + I+ T LA LT L L L
Sbjct: 313 EKLTNLRRLKLDWCEIGGQTLRRLAALHRLRSLELMLFWGQHISGTDLAELTGLLELEKL 372
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L I Y+ + LR+L + G D+ +H+ L++L L L+
Sbjct: 373 TLHP--IPPWALEYIGPLRTLRTLTLSLFGEGDSEFRHLAQLTNLCWLKLT--------- 421
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
+T L HL+ L++LR+L + VTA
Sbjct: 422 ----------------GPAVTDCALGHLRTLRSLRTLHISESAVTAT 452
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
V ++ DVT +GL HL S L++L+ + C S + L NLT L ITA
Sbjct: 244 VRIANGDVTTAGLYHLPRLSKLKTLEIDSCPVDS---IAPLTACPNLTEL------VITA 294
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ ++N G L+ L L L + WC I ++ L+ L
Sbjct: 295 EAGTERRAVVN------------DTGTAGLEKLTNLRRLKLDWCE-IGGQTLRRLAALHR 341
Query: 182 LKSLQISC---SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L+SL++ ++ + +A L GL +L L L P+ L+ + L +L L L+
Sbjct: 342 LRSLELMLFWGQHISGTDLAELTGLLELEKLTLH--PIPPWALEYIGPLRTLRTLTLSLF 399
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
D ++LTNL L L + D L +L L +L+ L +S++ V ++G
Sbjct: 400 GEGDSEFRHLAQLTNLCWLKLTGPAVTDCALGHLRTLRSLRTLHISESAVTATG 453
>gi|442624469|ref|NP_001261138.1| partner of paired, isoform B [Drosophila melanogaster]
gi|440214583|gb|AGB93669.1| partner of paired, isoform B [Drosophila melanogaster]
Length = 562
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 202 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 243
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 244 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 303
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 304 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 363
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 364 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 423
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 424 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQ 483
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 484 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 232 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 291
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 292 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 351
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 352 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 394
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 395 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 454
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ ++++
Sbjct: 455 SLNQCQITDHGMLKIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLS 514
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 515 SKGIDIIMKLPKLQKLNL 532
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 34/240 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 236 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 294
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 295 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 350
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 351 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 409
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 410 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 469
>gi|195430566|ref|XP_002063325.1| GK21848 [Drosophila willistoni]
gi|194159410|gb|EDW74311.1| GK21848 [Drosophila willistoni]
Length = 543
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 207 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 248
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HLR
Sbjct: 249 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNT 308
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 309 GLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 368
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 369 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 428
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 429 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLQELENLNIGQ 488
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 489 CSRITDKGLQTLAEDLTNLKTIDLYGCTQLTSKGIDIIMKLPKLQKLNL 537
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 161/319 (50%), Gaps = 37/319 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 237 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLET 296
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 297 LELGGCCNITNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 356
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKL 320
G+ D C LSD +G H++ GLT+L+SINLSF ++D L+ L
Sbjct: 357 GLQD-------------CQRLSDEALG-----HIAQGLTSLKSINLSFCVSVTDSGLKHL 398
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRS 376
A + L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRS
Sbjct: 399 ARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRS 458
Query: 377 LEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRI 433
L + +TD G+ I K L L LN+ Q +TDK L+ L LT L ++++ +++
Sbjct: 459 LSLNQCQITDQGMLKIAKSLQELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQL 518
Query: 434 TSAGLRHLKPLKNLRSLTL 452
TS G+ + L L+ L L
Sbjct: 519 TSKGIDIIMKLPKLQKLNL 537
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 241 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 299
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 300 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 355
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 356 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 414
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 415 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 467
>gi|430746592|ref|YP_007205721.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
gi|430018312|gb|AGA30026.1| WD40 repeat-containing protein [Singulisphaera acidiphila DSM
18658]
Length = 830
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 255 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGI 312
+ L +DS GI D GL +L L NL+ L + T ++ GL HL+ L L +NLS +G+
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-SGL 681
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
SD ++ +LA L LK L+LD + D+G+AAL +T LT L L ++TD+G + L+
Sbjct: 682 SDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGMV 741
Query: 373 NLRSL-----EICGGGLTDAGVKHIKDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 425
+ L + G GL A +K + L SL+ + ++Q LTD L + L L
Sbjct: 742 QMERLSLGNVSVRGPGL--ANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDF 799
Query: 426 LNVSNSRITSAGL---RHLKPL 444
LN+ + +T AG+ R +KPL
Sbjct: 800 LNLGETSVTDAGMAAARKIKPL 821
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I D+ ++ L+ L NL+ L I +++ G+A+L L KLT LNL
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLS-------------- 678
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
LSD + + L L+ L+LD + D G+ L G+ L L L +T
Sbjct: 679 -----------SGLSDKAVARLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDET 727
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA------RQITDTG 340
+V +GL L G+ +E ++L + L L G+S LKSL+ A +TD G
Sbjct: 728 KVTDAGLSALKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAG 787
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L L +L L L+L +TD+G A R K L
Sbjct: 788 LVHLENLPALDFLNLGETSVTDAGMAAARKIKPL 821
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMK 174
I G++ A L+NL L + + RI G GL +L L KL LN+ + ++D +
Sbjct: 630 EEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVA 687
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ L LK L + + + DSG+A LKG+ LT L+L+ VT A L +L
Sbjct: 688 RLAPLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKG-------- 739
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL------ELSDTQV 288
+ +E L+L + + GL NL G+ LK L + + +
Sbjct: 740 ----------------MVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPL 783
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+GL HL L L+ +NL T ++D +A +K L L RQ+
Sbjct: 784 TDAGLVHLENLPALDFLNLGETSVTDAG---MAAARKIKPLILQ-RQV 827
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+ D+GL HL NL+ L + +I GL HL L LT L+ ++ ++ + + A
Sbjct: 633 IDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNL--SSGLSDKAVARLA 690
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L L+ G+ LKG+ L L++ +TD+ + L G+ ++ L +
Sbjct: 691 PLKELKRLSLDHTDLRDSGMAALKGMTTLTELSLDETK-VTDAGLSALKGMVQMERLSLG 749
Query: 189 CSKVTDSGIAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
V G+A LKG+ +L L+ + P+T A L L L +L +LNL ++D
Sbjct: 750 NVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPALDFLNLGETSVTD 809
Query: 243 DGCEKFSRLTNL 254
G ++ L
Sbjct: 810 AGMAAARKIKPL 821
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
S ++D + L L+ L + + D G+ L+G++ LT LS +T G+ A
Sbjct: 679 SGLSDKAVARLAPLKELKRLSLDHT-DLRDSGMAALKGMTTLTELSLDETK-VTDAGLSA 736
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-----NCITDSDMKPLSGLTN 181
G++ + +L L + GL NLKG+ +L+SL+ + +TD+ + L L
Sbjct: 737 LKGMVQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKPSPLTDAGLVHLENLPA 796
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTL 208
L L + + VTD+G+A + ++ L L
Sbjct: 797 LDFLNLGETSVTDAGMAAARKIKPLIL 823
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 327 KSLNLDARQ-ITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGL 384
K L +D+ + I D GL L L L L + ARI G A+L L L + G L
Sbjct: 623 KDLRIDSEEGIDDAGLEHLARLVNLEGLSIHQTARIRGPGLAHLAKLPKLTKLNLSSG-L 681
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+D V + L L L+L + +L D + + G+T L L++ +++T AGL LK +
Sbjct: 682 SDKAVARLAPLKELKRLSL-DHTDLRDSGMAALKGMTTLTELSLDETKVTDAGLSALKGM 740
Query: 445 KNLRSLTLESCKVTA------NDIKRLQSRDLPNLVSFRP 478
+ L+L + V + RL+S + ++P
Sbjct: 741 VQMERLSLGNVSVRGPGLANLKGMSRLKSLSFVAVAQYKP 780
>gi|406831321|ref|ZP_11090915.1| hypothetical protein SpalD1_06780 [Schlesneria paludicola DSM
18645]
Length = 785
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 148/279 (53%), Gaps = 17/279 (6%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IG 265
T L+ +G +++ + L+ L LNL ++SD G + R + LNL+ C +
Sbjct: 506 TALSADGT-ISSEIVSQLALLKGRLILNLEGARISDAGTAQL-RALPIVGLNLELCSQLT 563
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISD------GSLR 318
D +L+GL L L LS T V S+GL ++ L ++ L I+D GS++
Sbjct: 564 DATFSSLSGLKQLVALVLSGTNVTSTGLTQVAENLPLVALELELCDAINDDVCLTLGSMK 623
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+L L+ LK + R I+D GL L +LT L L+L+G ++TD+G +L++ K LR L+
Sbjct: 624 RLRWLN-LKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLD 682
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLS-----QNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+ L DAG++ + L SL LNL +LTD+ ++ L L LN++ S++
Sbjct: 683 LSLLNLNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKL 742
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
T +GL L+ L LR+L + KVT + ++ + R LP
Sbjct: 743 TDSGLEQLQELNQLRTLHVVRTKVTESGREKFR-RALPE 780
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 123/267 (46%), Gaps = 27/267 (10%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
L ++L G+ ++D+G L+ + L+ C Q++D L GL L +L N +
Sbjct: 529 LILNLEGARISDAGTAQLRALP-IVGLNLELCSQLTDATFSSLSGLKQLVALVLSGTN-V 586
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
T+ G+ A + LV L+LE C I+ + C+T MK L L
Sbjct: 587 TSTGLTQVAENLPLVALELELCDAINDDV------------------CLTLGSMKRLRWL 628
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NLK ++D G+ LK L +L +LNL G VT A L L +L L L+L+
Sbjct: 629 -NLKKSGFEKRGISDIGLEQLKTLTELEMLNLYGNKVTDAGLIHLQSLKRLRDLDLSLLN 687
Query: 240 LSDDGCEKFSRLTNLESLNL------DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
L+D G E S L +LE LNL + D +LT L L L L+ +++ SGL
Sbjct: 688 LNDAGIESLSPLISLERLNLMFTEGFAGPSLTDRATRSLTPLQQLTWLNLNGSKLTDSGL 747
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKL 320
L L L ++++ T +++ K
Sbjct: 748 EQLQELNQLRTLHVVRTKVTESGREKF 774
>gi|431930507|ref|YP_007243553.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828810|gb|AGA89923.1| TIR domain-containing protein [Thioflavicoccus mobilis 8321]
Length = 1283
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 146/314 (46%), Gaps = 51/314 (16%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L NL L L +L C+ +D+ PL+GLTNL++L C+ VTD + L GL L
Sbjct: 108 LSNLGFLAGLTALQYLKCSSTQVADLTPLAGLTNLQALDCGCTPVTD--LTPLAGLTNLR 165
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
L+ PV G E + LT L+SL+ + D
Sbjct: 166 SLDCAYTPVA--------------------------GLEPLADLTTLKSLDCRHTRVAD- 198
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L L GL L+ L+ DT+V L ++ L NL+S++ T + D L LAGL++L+
Sbjct: 199 -LAPLAGLTELQFLDCGDTRVAD--LEPVASLANLQSLDCGGTRVVD--LTPLAGLANLQ 253
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+L+ Q+ D LA L SLT L LD A +TD G L + NL+SL IC
Sbjct: 254 ALDCGFTQVAD--LAPLASLTNLQSLDCRSAPVTDLGP--LASLGNLQSL-IC------- 301
Query: 388 GVKHIKDLSSLTLLN--LSQNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
+ DL+ L L LS NC N L ++ + L SLN S++ + A L L L
Sbjct: 302 QFTPVADLAPLAGLTNLLSLNCWNTPVIDLAPLASIGNLQSLNCSSTPV--ADLASLAGL 359
Query: 445 KNLRSLTLESCKVT 458
NLRSL VT
Sbjct: 360 TNLRSLECAGSPVT 373
>gi|432862145|ref|XP_004069745.1| PREDICTED: F-box/LRR-repeat protein 14-like [Oryzias latipes]
Length = 403
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 181/380 (47%), Gaps = 65/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-----GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
RG+ + LS RR+ + QGM G NL L G ++ + L
Sbjct: 71 RGIKKVQILSLRRSLSYVIQGMPHIESLNLCGCFNLTDNGL--------GHAFVQDIPSL 122
Query: 158 ESLNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ L NL++L + CS +T++G+ + GL KL LNL C
Sbjct: 123 RLLNLSLCKQITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSC 182
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+SD G S +T + EG ++L
Sbjct: 183 R-----------------------HVSDVGIGHISGMTRSAA----------EGCLSLEK 209
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GL L+ +NLSF G ISD + L+ ++ L SLNL
Sbjct: 210 LTLQDCQKLTDL-----SLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLR 264
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F +I D AY+ + L+SL +C ++D
Sbjct: 265 SCDNISDTGIMHLAMGSLQ-LSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDD 323
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L
Sbjct: 324 GINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQL 383
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 384 PCLKVLNLGLWQMTDSERVR 403
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 163/329 (49%), Gaps = 46/329 (13%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL LDL
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCKQITDSSLGRIAQYLKNLEALDL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL KL+SLN++ C ++D + +SG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLIAWGLHKLKSLNLRSCRHVSDVGIGHISGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C K+TD + ++ KGL KL +LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCG-----------------------GISDAGMI 250
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNL 302
S + +L SLNL SC I D G+++L G L L++S ++G L +++ GL L
Sbjct: 251 HLSHMAHLCSLNLRSCDNISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQL 310
Query: 303 ESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-A 358
+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +DL+G
Sbjct: 311 KSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCT 370
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+IT G + L+ L + +TD+
Sbjct: 371 KITKRGLERITQLPCLKVLNLGLWQMTDS 399
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISD G+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDAGMIHLSHMAHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C +I + +GL +L+SL++ C+ D + + + LK+
Sbjct: 278 AMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKT 337
Query: 185 LQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 338 LNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQMT 397
Query: 242 D 242
D
Sbjct: 398 D 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 74/311 (23%)
Query: 176 LSGLTNLKSLQI-SCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ G+ +++SL + C +TD+G+ A+++ + L LLNL C
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRLLNLSLCK----------------- 131
Query: 233 LNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLEL-SDTQV 288
Q++D + ++ L NLE+L+L C I + GL+ + GL LK L L S V
Sbjct: 132 ------QITDSSLGRIAQYLKNLEALDLGGCSNITNTGLLLIAWGLHKLKSLNLRSCRHV 185
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 347
G+ H+SG+T ++G L SL+ L L D +++TD L ++
Sbjct: 186 SDVGIGHISGMTR---------SAAEGCL-------SLEKLTLQDCQKLTDLSLKHVSK- 228
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
GL L + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 229 -GLNKLKVL-------------------NLSFCGG-ISDAGMIHLSHMAHLCSLNLRSCD 267
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS +I L ++ + L L+SL+L SC ++ + I R
Sbjct: 268 NISDTGIMHLAMGSLQLSGLDVSFCDKIGDQSLAYVAQGLYQLKSLSLCSCHISDDGINR 327
Query: 465 L--QSRDLPNL 473
+ Q +L L
Sbjct: 328 MVRQMHELKTL 338
>gi|343421695|emb|CCD18730.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 582
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 203/433 (46%), Gaps = 32/433 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +DLSG+ V D L + NL ++ C +SD + L + +L L +
Sbjct: 129 LRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD--VSPLADIESLQELDLGLCRS 186
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++ A L NL L+LE+ L L LE LN+ C + D + PLS
Sbjct: 187 IN-EGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLD--VSPLSE 243
Query: 179 LTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L +S CS T G++ L LQ L +LNL VT L LS SL LNL+
Sbjct: 244 IKTLVELDLSLCCSLFT--GVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301
Query: 237 RCQLSDDGCEKFSRLTNLES---LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
C+ G S L ++S L+L +C +G+ +L L L L+L +T + + L
Sbjct: 302 SCR----GLTNVSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESL 357
Query: 294 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
R + +LE ++ S T +SD + ++ L++L LNL G+ A+ SL L
Sbjct: 358 RDICESESLEELDASSCTALSD--VFHISVLNTLVELNLSFCPNLVKGMEAIASLPFLRA 415
Query: 353 LDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
LD+ G IT+ LR +L SL C LTD V ++ +S TLL L C ++
Sbjct: 416 LDISGTPITNHCLRGLRKSNSLETVSLRSC-NNLTD--VFYLSKIS--TLLRLDLGCCIS 470
Query: 411 -DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN-----DIKR 464
K + + L L LN+ +R + + L ++L L L SC ++ +I+
Sbjct: 471 LQKGVGTLGKLPRLRILNLEGTRAANDWIIGLSTSRSLAVLILSSCLALSDVSLLANIEP 530
Query: 465 LQSRDLPNLVSFR 477
L+ D+ N VS R
Sbjct: 531 LEELDISNCVSIR 543
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 146/327 (44%), Gaps = 51/327 (15%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ GL NL+ L +S ++V D L LT +NL C + + L+ + SL L+L
Sbjct: 123 IGGLKNLRELDLSGTRVQDEVFYELSENPNLTKVNLRQCQGLSD-VSPLADIESLQELDL 181
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD---------- 285
C+ ++G + + L NL LNL+ + + L L +L+ L LS
Sbjct: 182 GLCRSINEGVQDLAELPNLRVLNLEKVNVPSDSLFELCKSRSLEKLNLSSCKRLLDVSPL 241
Query: 286 TQVGS-------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+++ + +G+ L L L +NL T ++D SL L+ SL+ LNL
Sbjct: 242 SEIKTLVELDLSLCCSLFTGVSELGKLQCLRILNLRNTAVTDHSLPGLSESDSLEILNLS 301
Query: 333 A-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK- 390
+ R +T+ ++ L + L LDL G L L +L++ +T+ ++
Sbjct: 302 SCRGLTN--VSPLKEIKSLVQLDLSNCPALRDGIGSLVALPFLCTLKLRNTAITNESLRD 359
Query: 391 ----------------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
HI L++L LNLS NL K +E I+ L L +L++
Sbjct: 360 ICESESLEELDASSCTALSDVFHISVLNTLVELNLSFCPNLV-KGMEAIASLPFLRALDI 418
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESC 455
S + IT+ LR L+ +L +++L SC
Sbjct: 419 SGTPITNHCLRGLRKSNSLETVSLRSC 445
>gi|350417674|ref|XP_003491538.1| PREDICTED: F-box/LRR-repeat protein 14-like [Bombus impatiens]
Length = 485
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 140/256 (54%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 296
SD+G C+ L +LE+LN+ C + D+GL + + +LKC++L T++ ++GL +
Sbjct: 409 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 468
Query: 297 SGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 469 MKLPQLSTLNLGLWHV 484
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 35/320 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 203
LKG+ LE+LN+ C ITD + L L +S C +V+D + YLK L
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 204 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDS 261
+ L L C +T L ++ L L L+L C Q+SD G + +L +N +S
Sbjct: 237 EHLELGGC--CNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLG------IAHLAGVNRES 288
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 319
G G + L L C LSD LRH+S GLT L+SINLSF I+D L+
Sbjct: 289 AG----GNLALEHLSLQDCQRLSD-----EALRHVSIGLTTLKSINLSFCVCITDSGLKH 339
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKNLR 375
LA +SSL+ LNL + I+D G+A L + ++ LD+ F +I D ++ + NL+
Sbjct: 340 LAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLK 399
Query: 376 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 432
L + ++D G+ K K L L LN+ Q LTDK L I+ + L +++ +R
Sbjct: 400 LLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTR 459
Query: 433 ITSAGLRHLKPLKNLRSLTL 452
I++ GL + L L +L L
Sbjct: 460 ISTNGLERIMKLPQLSTLNL 479
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 39/242 (16%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ +L L +L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NL 259
NL
Sbjct: 478 NL 479
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 251 LTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHLSGL 299
+ NLE+LNL C I D GL+N C NL C ++SD +G R + L
Sbjct: 180 VPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIVQYL 233
Query: 300 TNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-------- 348
NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 234 KNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNL 293
Query: 349 GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLN 402
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL LN
Sbjct: 294 ALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLRELN 350
Query: 403 LSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 459
L N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++
Sbjct: 351 LRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISD 410
Query: 460 NDIKRL 465
I ++
Sbjct: 411 EGICKI 416
>gi|149173873|ref|ZP_01852502.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
gi|148847403|gb|EDL61737.1| hypothetical protein PM8797T_05530 [Planctomyces maris DSM 8797]
Length = 473
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 159/379 (41%), Gaps = 44/379 (11%)
Query: 117 NAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N A G F+ + D L TR+ G L + ++ N + + K
Sbjct: 72 NKPEAGGGYYFSNYFDYCSEDELPMLTRVEG----------LRAFDMFDGNSFSPAGWKQ 121
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLN--LEGCPVTAACLDSLSALGSL 230
+ ++ L++ +SC VTD + L+GL +L +LN ++ PV+ L LS+ +L
Sbjct: 122 IGQISGLEAFNVSCQYVTDEHLMGLQGLPQLKDLKILNNCMKQSPVSDQGLQVLSSFPAL 181
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNL-----DSC-----------------GIGDEG 268
L L+ +++ GCE T L +L L D C D G
Sbjct: 182 RRLVLHSREINVRGCELIGDCTELRALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAG 241
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L +L+GL L L L Q+ SGL + L S + + +L++L L L
Sbjct: 242 LKHLSGLKQLTRLVLHSDQMTGSGLNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAV 301
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNL + D L + L L L L + ITD G L KNLR L + +T+AG
Sbjct: 302 LNLSTPSVNDAVLQTMPDLPQLEALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNAG 361
Query: 389 VKHIKDLSSLTLLNLSQNCN---LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
+ ++ L L LL L + +T K LE LT L L V + +A L+PL
Sbjct: 362 LIRLEPLQQLRLLVLGNPGHTELITGKGLE---SLTKLSRLEVLDIDYVNAEQLDLRPLA 418
Query: 446 NLRSLTLESCKVTANDIKR 464
SL ++D+++
Sbjct: 419 RCSSLVEVILNFGSDDVRK 437
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 29/261 (11%)
Query: 25 LEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
L +D + + C+ Q P V+D+ + V++S +L + L ++ G + DC+ L+
Sbjct: 149 LPQLKDLKILNNCMKQSP-VSDQGLQVLSS-FPALRRLVLHSREINVRGCELIGDCTELR 206
Query: 85 SLDF-----NFCIQ----------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+L+ + C++ SD GL+HL GL LT L ++ +T G
Sbjct: 207 ALELWGPITDECLKPLGKLKNLKHLIVVGTFSDAGLKHLSGLKQLTRLVL-HSDQMTGSG 265
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ +FA L + + L L L L LN+ + D+ ++ + L L+
Sbjct: 266 LNSFAEAPELREFGFSGSPAGNATLKQLDQLPGLAVLNLS-TPSVNDAVLQTMPDLPQLE 324
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL---NLNRCQL 240
+L + S +TD G+ L ++ L L L +T A L L L L L N +L
Sbjct: 325 ALSLKNSNITDKGLDALVKVKNLRELVLYSTEITNAGLIRLEPLQQLRLLVLGNPGHTEL 384
Query: 241 -SDDGCEKFSRLTNLESLNLD 260
+ G E ++L+ LE L++D
Sbjct: 385 ITGKGLESLTKLSRLEVLDID 405
>gi|291230586|ref|XP_002735244.1| PREDICTED: partner of paired-like [Saccoglossus kowalevskii]
Length = 396
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 38/302 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
NLQSL+ + C ++D GL H +R + +LT L+ IT + A + NL LDL
Sbjct: 93 NLQSLNLSGCYNLTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDL 152
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
C I G L+ GL KL LN++ C ++DS + L+GLT K G
Sbjct: 153 GGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLT----------KNDAGG 202
Query: 197 IAYLKGL-----QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSR 250
+L+ L QKLT L A L++ L L LNL+ C ++D G SR
Sbjct: 203 TLFLQHLVLQDCQKLTDL---------ALLNAARGLVKLESLNLSFCGGITDSGMVHLSR 253
Query: 251 LTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESIN 306
+ +L+ LNL SC I D G+ +L G L+ L++S +VG + L H++ G+ +L SI+
Sbjct: 254 MPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKVGDASLTHIAQGMYSLMSIS 313
Query: 307 LSFTGIS-DGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDLFG-ARITD 362
LS I+ DG R + L LK+LN+ +ITD GL + T+L L+ +DL+G +IT
Sbjct: 314 LSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGLGLIATNLRKLSCIDLYGCTKITT 373
Query: 363 SG 364
G
Sbjct: 374 VG 375
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 149/278 (53%), Gaps = 29/278 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G ++T++GL+ + + L+ L+ C +SD G+ H
Sbjct: 132 ITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLLLIAWGLTKLRYLNLRSCRHVSDSGIAH 191
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L GL+ +N+A G + L L L+ C ++ L+N +GL+KLES
Sbjct: 192 LAGLT--------KNDA---------GGTLFLQHLVLQDCQKLTDLALLNAARGLVKLES 234
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PV 216
LN+ +C ITDS M LS + +LK L + SC ++D GIA+L +G L L++ C V
Sbjct: 235 LNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLRTLDVSFCDKV 294
Query: 217 TAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGL-VNL 272
A L ++ + SL ++L+ C ++DDG + R L +L++LN+ C I DEGL +
Sbjct: 295 GDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSRITDEGLGLIA 354
Query: 273 TGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 309
T L L C++L T++ + GL + L L +NL
Sbjct: 355 TNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNLGL 392
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 177/348 (50%), Gaps = 38/348 (10%)
Query: 134 VKLDLERC-TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSK 191
KL L R + LVN +G+ +++ L++K S + G+ NL+SL +S C
Sbjct: 52 AKLHLRRANPSLFPSLVN-RGIRRVQILSLK------RSLSSVVQGMHNLQSLNLSGCYN 104
Query: 192 VTDSGIA--YLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCE 246
+TD G+A +++ + LT+LNL C +T + L ++ L +L +L+L C +++ G
Sbjct: 105 LTDVGLAHAFVREMPSLTVLNLSLCKQITDSSLGRIAQYLRNLEHLDLGGCCNITNTGLL 164
Query: 247 KFSR-LTNLESLNLDSC-GIGDEGLVNLTGLCN--------LKCLELSDTQ--VGSSGLR 294
+ LT L LNL SC + D G+ +L GL L+ L L D Q + L
Sbjct: 165 LIAWGLTKLRYLNLRSCRHVSDSGIAHLAGLTKNDAGGTLFLQHLVLQDCQKLTDLALLN 224
Query: 295 HLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG-LT 351
GL LES+NLSF G I+D + L+ + SLK LNL + I+D G+A L L
Sbjct: 225 AARGLVKLESLNLSFCGGITDSGMVHLSRMPSLKELNLRSCDNISDIGIAHLAEGGAYLR 284
Query: 352 HLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCN 408
LD+ F ++ D+ ++ + +L S+ + +TD G+ ++ L L LN+ Q
Sbjct: 285 TLDVSFCDKVGDASLTHIAQGMYSLMSISLSSCPITDDGMARLVRTLRDLKTLNIGQCSR 344
Query: 409 LTDKTLELISGLTGLVSLNVSN----SRITSAGLRHLKPLKNLRSLTL 452
+TD+ L LI+ T L L+ + ++IT+ GL + L L L L
Sbjct: 345 ITDEGLGLIA--TNLRKLSCIDLYGCTKITTVGLEKIMQLPCLSVLNL 390
>gi|427793023|gb|JAA61963.1| Putative f-box and leucine-rich repeat protein 14a, partial
[Rhipicephalus pulchellus]
Length = 372
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 149/289 (51%), Gaps = 31/289 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL--KDCSNLQSLDF 88
+L +L L + D + IA L +DL G +DVT++GL HL NL+SL+
Sbjct: 82 SLTELNLSMCKQITDNSLGRIAQHLQGLERLDLGGCTDVTNTGL-HLIAWGLHNLRSLNL 140
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
C +SD G+ HL G++ N+AI G + L L L+ C ++
Sbjct: 141 RSCRGVSDPGISHLAGINP--------NSAI---------GTLRLESLCLQDCQKLTDDA 183
Query: 149 VNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G
Sbjct: 184 LRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGS 243
Query: 205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+++ L++ C L + L L L+LN C +SDDG + +R L +L++L+L
Sbjct: 244 RISTLDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLHLGQ 303
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
CG + D+GL + L L+C++L T++ + GL L L NL +NL
Sbjct: 304 CGRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLEKLMQLPNLGVLNL 352
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 152/321 (47%), Gaps = 46/321 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
++ NL+SL+ C ++D L H ++ + +LT L+ IT + A L L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 134 VKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLK 183
+LDL CT + ++L GL L SLN++ C ++D + L+G+ L+
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 184 SLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
SL + C K+TD + ++ GLQ L LNL C ++
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFC-----------------------ASVT 206
Query: 242 DDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS- 297
D G + +R+ L LNL SC I D GL L G + L++S +VG GL H S
Sbjct: 207 DAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQ 266
Query: 298 GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLD 354
GL L S++L+ +SD + ++A L L++L+L ++TD GL+ + L L +D
Sbjct: 267 GLFQLRSLSLNACPVSDDGIGRVARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCID 326
Query: 355 LFG-ARITDSGAAYLRNFKNL 374
L+G +IT G L NL
Sbjct: 327 LYGCTKITTVGLEKLMQLPNL 347
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 167/318 (52%), Gaps = 31/318 (9%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN+ C +TD+ + + + +L L +S C ++TD+ + + + LQ L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 207 TLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG 263
L+L GC VT L ++ L +L LNL C+ +SD G +++L +N +S
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPG------ISHLAGINPNSA- 162
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA 321
G + L LC C +L+D LR +S GL +L S+NLSF ++D L+ A
Sbjct: 163 ---IGTLRLESLCLQDCQKLTD-----DALRFISIGLQDLRSLNLSFCASVTDAGLKHAA 214
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
++ L+ LNL + I+D GLA L + ++ LD+ F ++ D G + + LRSL
Sbjct: 215 RMARLRELNLRSCDNISDLGLAYLAEGGSRISTLDVSFCDKVGDQGLLHASQGLFQLRSL 274
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRIT 434
+ ++D G+ + + L L L+L Q +TDK L LI+ L L +++ ++IT
Sbjct: 275 SLNACPVSDDGIGRVARSLGDLQTLHLGQCGRVTDKGLSLIADHLKQLRCIDLYGCTKIT 334
Query: 435 SAGLRHLKPLKNLRSLTL 452
+ GL L L NL L L
Sbjct: 335 TVGLEKLMQLPNLGVLNL 352
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 296 LSGLTNLESINL-SFTGISDGSLRK--LAGLSSLKSLNLDA-RQITDTGLAALTS-LTGL 350
+ G+ NLES+N+ ++D L + + SL LNL +QITD L + L GL
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 351 THLDLFG-ARITDSGAAYLR-NFKNLRSLEICG-GGLTDAGVKHIKDL---SSLTLLNLS 404
LDL G +T++G + NLRSL + G++D G+ H+ + S++ L L
Sbjct: 110 ERLDLGGCTDVTNTGLHLIAWGLHNLRSLNLRSCRGVSDPGISHLAGINPNSAIGTLRLE 169
Query: 405 ----QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
Q+C LTD L IS GL L SLN+S + +T AGL+H + LR L L SC
Sbjct: 170 SLCLQDCQKLTDDALRFISIGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSC 227
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 56/281 (19%)
Query: 200 LKGLQKLTLLNLEGC-PVTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSR-LTNL 254
++G+ L LN+ GC +T A L+ + + SL LNL+ C Q++D+ + ++ L L
Sbjct: 50 IQGVPNLESLNMIGCFNLTDAWLNHAFVQDVHSLTELNLSMCKQITDNSLGRIAQHLQGL 109
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINL-SFTGI 312
E L+L C T V ++GL ++ GL NL S+NL S G+
Sbjct: 110 ERLDLGGC-----------------------TDVTNTGLHLIAWGLHNLRSLNLRSCRGV 146
Query: 313 SDGSLRKLAGL---SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
SD + LAG+ S++ +L L++ + D ++TD ++
Sbjct: 147 SDPGISHLAGINPNSAIGTLRLESLCLQDC------------------QKLTDDALRFIS 188
Query: 370 -NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSL 426
++LRSL + +TDAG+KH ++ L LNL N++D L L G + + +L
Sbjct: 189 IGLQDLRSLNLSFCASVTDAGLKHAARMARLRELNLRSCDNISDLGLAYLAEGGSRISTL 248
Query: 427 NVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
+VS ++ GL H + L LRSL+L +C V+ + I R+
Sbjct: 249 DVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 289
>gi|41393121|ref|NP_958890.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|37681873|gb|AAQ97814.1| hypothetical protein MGC40195 [Danio rerio]
gi|66911816|gb|AAH96775.1| F-box and leucine-rich repeat protein 14a [Danio rerio]
gi|157423043|gb|AAI53540.1| Fbxl14a protein [Danio rerio]
gi|182891432|gb|AAI64514.1| Fbxl14a protein [Danio rerio]
Length = 411
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 170/309 (55%), Gaps = 26/309 (8%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C +T + L ++ L +L
Sbjct: 86 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 145
Query: 231 FYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTGLC--------NLK 279
L+L C +++ G + L NL+SLNL SC + D G+ +L G+ L+
Sbjct: 146 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 205
Query: 280 CLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 335
L L D Q + L+H+S GL L+ +NLSF G ISD + L+ ++ L +LNL +
Sbjct: 206 HLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 265
Query: 336 ITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 391
I+DTG+ L+ L LD+ F ++ D AY+ + L+SL +C ++D G+ +
Sbjct: 266 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 325
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 449
++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L+
Sbjct: 326 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 385
Query: 450 LTLESCKVT 458
L L ++T
Sbjct: 386 LNLGLWQMT 394
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 165/346 (47%), Gaps = 58/346 (16%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 68 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 121
Query: 160 LNIKWCNCITDSDMKPLS---------------------------GLTNLKSLQI-SCSK 191
LN+ C ITDS + ++ GL NLKSL + SC
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 181
Query: 192 VTDSGIAYLKGLQK------LTL--LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QL 240
V+D GI +L G+ + LTL L L+ C +T L +S L L LNL+ C +
Sbjct: 182 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGI 241
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLS 297
SD G S +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 242 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 301
Query: 298 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 353
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 302 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 361
Query: 354 DLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
DL+G +IT G + L+ L + +T+ VK + D S +
Sbjct: 362 DLYGCTKITKRGLERITQLPCLKVLNLGLWQMTE--VKGLGDASEI 405
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 158/304 (51%), Gaps = 26/304 (8%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H ++D +L+ L+ + C QI+D L + + L NL L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL NL L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGC---PVTAACL 221
+TD +K +S GL LK L +S C ++D+G+ +L + +L LNL C T
Sbjct: 214 KLTDLSLKHISKGLNKLKVLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMH 273
Query: 222 DSLSALGSLFYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLVNLT-GLCNL 278
S+ AL L+ L+++ C ++ D ++ L L+SL+L SC I D+G+ + + L
Sbjct: 274 LSMGAL-RLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHEL 332
Query: 279 KCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 335
K L + ++ GL ++ LT L I+L T I+ L ++ L LK LNL Q
Sbjct: 333 KTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNLGLWQ 392
Query: 336 ITDT 339
+T+
Sbjct: 393 MTEV 396
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 43/290 (14%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 130 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 189
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 190 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 233 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 292
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEG--- 268
SL+ + Y L+L C +SDDG + R + L++LN+ C I D+G
Sbjct: 293 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 350
Query: 269 ----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L LTG+ C T++ GL ++ L L+ +NL +++
Sbjct: 351 IADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKVLNLGLWQMTE 395
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 32/242 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + ++ L L C +++D+ +G R L N
Sbjct: 89 MPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQYLKN 144
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T L
Sbjct: 145 LELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTL 204
Query: 351 THLDLFG-ARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
HL L ++TD ++ N + +L CGG ++DAG+ H+ ++ L LNL
Sbjct: 205 EHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGG-ISDAGMIHLSHMTQLWTLNLRSC 263
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 264 DNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGIN 323
Query: 464 RL 465
R+
Sbjct: 324 RM 325
>gi|320169501|gb|EFW46400.1| tyrosine-protein kinase Src42A [Capsaspora owczarzaki ATCC 30864]
Length = 1286
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 166/369 (44%), Gaps = 7/369 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
+++D GLS L+ L F NN +++ AFAGL L +L L R T I L
Sbjct: 120 RLTDISANAFTGLSALSQL-FLNNNRLSSVPAGAFAGLPALKQLQLNSNRITSISATL-- 176
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L +++ N IT + LT L L + + +T GL L+ ++
Sbjct: 177 FTGLTALTWLRLEF-NQITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQID 235
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ +T+ + + L + YL+L Q++ F+ LT L LN+D+ +
Sbjct: 236 VSINLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSILST 295
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GL L+ L L QV S +GLT L S+ L I+ LS L +L+
Sbjct: 296 TFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLS 355
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L+ IT +A +LT L +L LF RIT A + L SL + +T+
Sbjct: 356 LNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRITNIPST 415
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LS+LT L+L N ++T + S L+ + + + +++I+S + +L+ L
Sbjct: 416 AFASLSALTQLHLYNN-SITSISAGTFSSLSAVTYMYMYDNQISSIPANTFTGMTSLKLL 474
Query: 451 TLESCKVTA 459
L ++T+
Sbjct: 475 YLSGNQITS 483
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 2/355 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ N T+ + NN IT+ AF GL L L + + GL + SL +
Sbjct: 58 GIPNTTTQLYLNNNQITSIPTSAFPGLTVLQILQVYGNQITYIPADAFTGLTAVISLQLN 117
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +TD +GL+ L L ++ ++++ GL L L L +T+
Sbjct: 118 -NNRLTDISANAFTGLSALSQLFLNNNRLSSVPAGAFAGLPALKQLQLNSNRITSISATL 176
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L +L +L L Q++ F+ LT L L L S I TGL L +++
Sbjct: 177 FTGLTALTWLRLEFNQITSIPASVFTDLTGLSVLVLRSNNITSIPPYAFTGLTALSQIDV 236
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S + S +GLT ++L I+ S GL++L LN+D ++T
Sbjct: 237 SINLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTALTFLNMDNNRLTSILSTT 296
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
LT L +L L+ ++T L SL++ +T DLS L L+L
Sbjct: 297 FAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSL 356
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ N +T + LT L L++ N+RITS L L SL L + ++T
Sbjct: 357 NDNL-ITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTALGSLHLHTNRIT 410
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 145/350 (41%), Gaps = 30/350 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L+FN I L GLS L R+N IT+ AF GL L ++D+
Sbjct: 188 LEFNQITSIPASVFTDLTGLSVLV----LRSNNITSIPPYAFTGLTALSQIDVS------ 237
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N IT +GLT L + +++T + GL
Sbjct: 238 -------------------INLITSIPAFAFAGLTAATYLDLYINQITSISDSAFTGLTA 278
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT LN++ +T+ + + L +L YL L Q++ F+ LT L SL L I
Sbjct: 279 LTFLNMDNNRLTSILSTTFAGLTALQYLYLWSNQVTSIAPNTFAGLTALNSLQLYDNQIT 338
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L L L L+D + S + LT+L+ ++L I+ + L++
Sbjct: 339 SIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLSLFNNRITSIAANAFDDLTA 398
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L SL+L +IT+ A SL+ LT L L+ IT A + + + + ++
Sbjct: 399 LGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAGTFSSLSAVTYMYMYDNQIS 458
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
++SL LL LS N +T + SGLT L L++ +RITS
Sbjct: 459 SIPANTFTGMTSLKLLYLSGN-QITSVSANAFSGLTALTQLSLYLNRITS 507
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 137/324 (42%), Gaps = 12/324 (3%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT+ AF GL L L+++ R T I GL L+ L + W N +T
Sbjct: 263 NQITSISDSAFTGLTALTFLNMDNNRLTSILS--TTFAGLTALQYLYL-WSNQVTSIAPN 319
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+GLT L SLQ+ +++T L L L+L +T+ + + L SL YL+
Sbjct: 320 TFAGLTALNSLQLYDNQITSIPANAFDDLSVLNTLSLNDNLITSVPASAFANLTSLQYLS 379
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L +++ F LT L SL+L + I +L+ L L S T + +
Sbjct: 380 LFNNRITSIAANAFDDLTALGSLHLHTNRITNIPSTAFASLSALTQLHLYNNSITSISAG 439
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
LS +T + + IS G++SLK L L QIT A + LT LT
Sbjct: 440 TFSSLSAVTYMYMYD---NQISSIPANTFTGMTSLKLLYLSGNQITSVSANAFSGLTALT 496
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L+ RIT AA L +L + ++ DL+ L L L N +T
Sbjct: 497 QLSLYLNRITSISAAAFPGLTALLTLSLSDNQISSIPSSAFTDLTLLKFLYLYNN-QITS 555
Query: 412 KTLELISGLTGLVSLNVSNSRITS 435
GL L +L + N+ ITS
Sbjct: 556 IAANAFVGLPALSTLLLHNNTITS 579
>gi|17546075|ref|NP_519477.1| GALA protein 4 [Ralstonia solanacearum GMI1000]
gi|17428371|emb|CAD15058.1| type III effector protein gala6 [Ralstonia solanacearum GMI1000]
Length = 620
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 136/294 (46%), Gaps = 6/294 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L + L+G ++ G L D +L LD + ++ D G + L + SL N
Sbjct: 310 LKQLSLAGGMISGDGAQALADNKSLTDLDLSNN-RLGDAGAQALADSESFVSLKLG-GNE 367
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD-MKPLS 177
I A G +A A + L L+L G VN G KL L++ C C DSD L+
Sbjct: 368 IGADGAEALARNVVLQSLNLSYNPIGFWG-VNALGRAKLRKLDL--CACAIDSDGASALA 424
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
T+L SL + +++ D G L LTLLNL G + A +L++ SL L+L+R
Sbjct: 425 RNTSLASLYLGSNRIGDDGARALAKNSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSR 484
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ DDG + L SLNL IG G L L L+LS+ ++G G L+
Sbjct: 485 NGIGDDGTAALACHPRLTSLNLSRNQIGSTGAQQLAKSATLAELDLSENRIGPEGAEALA 544
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
T L ++N+S+ I + R LA SL SL+ I + G L + T +T
Sbjct: 545 RSTVLTTLNVSYNAIGEAGARALAESVSLTSLDARRNGIGEDGAKVLEANTRIT 598
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 136/292 (46%), Gaps = 5/292 (1%)
Query: 167 CITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
I+D M + LS LKS++ ++ A L+ L + G ++A L L+
Sbjct: 128 TISDPAMFRQLSLYPALKSVRFKGELTLEALKALPPELEHLEIGRCTGSAISAEGLAHLA 187
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
++ L LNLN ++ +G + +L SL+L CGIGD L +++CL+LS
Sbjct: 188 SM-PLKSLNLNGIEIGVEGARTLAASKSLVSLSLIGCGIGDRAAQALVASRSIQCLDLSV 246
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G + L+G L S+NL I + R LA +L SL++ + + G A
Sbjct: 247 NRIGRDGAQALAGAP-LVSLNLHNNEIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFA 305
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L L L G I+ GA L + K+L L++ L DAG + + D S L L
Sbjct: 306 GNTVLKQLSLAGGMISGDGAQALADNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLGG 365
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N D L + L SLN+S + I G+ L K LR L L +C +
Sbjct: 366 NEIGADGAEALARNVV-LQSLNLSYNPIGFWGVNALGRAK-LRKLDLCACAI 415
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 166/390 (42%), Gaps = 29/390 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+ L G + D L ++Q LD + +I G + L G + L SL+ NN
Sbjct: 214 SLVSLSLIGCGIGDRAAQALVASRSIQCLDLSVN-RIGRDGAQALAG-APLVSLNLH-NN 270
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
I +G + A L LD+ + G G L+ L++ I+ + L+
Sbjct: 271 EIGNEGARVLATSRTLTSLDVSNNGVGNAGAEAFAGNTVLKQLSLA-GGMISGDGAQALA 329
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS------------ 225
+L L +S +++ D+G L + L L G + A ++L+
Sbjct: 330 DNKSLTDLDLSNNRLGDAGAQALADSESFVSLKLGGNEIGADGAEALARNVVLQSLNLSY 389
Query: 226 ---------ALG--SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
ALG L L+L C + DG +R T+L SL L S IGD+G L
Sbjct: 390 NPIGFWGVNALGRAKLRKLDLCACAIDSDGASALARNTSLASLYLGSNRIGDDGARALAK 449
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L LS + + G + L+ +L +++LS GI D LA L SLNL
Sbjct: 450 NSTLTLLNLSGNNIHAVGAQALASNDSLITLDLSRNGIGDDGTAALACHPRLTSLNLSRN 509
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
QI TG L L LDL RI GA L L +L + + +AG + + +
Sbjct: 510 QIGSTGAQQLAKSATLAELDLSENRIGPEGAEALARSTVLTTLNVSYNAIGEAGARALAE 569
Query: 395 LSSLTLLNLSQNCNLTD--KTLELISGLTG 422
SLT L+ +N D K LE + +TG
Sbjct: 570 SVSLTSLDARRNGIGEDGAKVLEANTRITG 599
>gi|340728038|ref|XP_003402339.1| PREDICTED: f-box/LRR-repeat protein 14-like [Bombus terrestris]
Length = 485
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 140/256 (54%), Gaps = 28/256 (10%)
Query: 68 DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++T+ GL+ + + L+ LD C Q+SD G+ HL G++ ++
Sbjct: 246 NITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNR-----------------ES 288
Query: 127 FAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G + L L L+ C R+ L ++ GL L+S+N+ +C CITDS +K L+ +++L+
Sbjct: 289 AGGNLALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVCITDSGLKHLAKMSSLRE 348
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQL 240
L + SC ++D G+AYL +G +++ L++ C A + L +L L+L+ CQ+
Sbjct: 349 LNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQI 408
Query: 241 SDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 296
SD+G C+ L +LE+LN+ C + D+GL + + +LKC++L T++ ++GL +
Sbjct: 409 SDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERI 468
Query: 297 SGLTNLESINLSFTGI 312
L L ++NL +
Sbjct: 469 MKLPQLSTLNLGLWHV 484
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 35/320 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQIS-CSKVTDSG----IAYLKGL 203
LKG+ LE+LN+ C ITD + L L +S C +V+D + YLK L
Sbjct: 177 LKGVPNLEALNLSGCYNITDVGLINAFCQEYATLIELNLSLCKQVSDISLGRIVQYLKNL 236
Query: 204 QKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDS 261
+ L L C +T L ++ L L L+L C Q+SD G + +L +N +S
Sbjct: 237 EHLELGGC--CNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLG------IAHLAGVNRES 288
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRK 319
G G + L L C LSD LRH+S GLT L+SINLSF I+D L+
Sbjct: 289 AG----GNLALEHLSLQDCQRLSD-----EALRHVSIGLTTLKSINLSFCVCITDSGLKH 339
Query: 320 LAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNFKNLR 375
LA +SSL+ LNL + I+D G+A L + ++ LD+ F +I D ++ + NL+
Sbjct: 340 LAKMSSLRELNLRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLK 399
Query: 376 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SR 432
L + ++D G+ K K L L LN+ Q LTDK L I+ + L +++ +R
Sbjct: 400 LLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTR 459
Query: 433 ITSAGLRHLKPLKNLRSLTL 452
I++ GL + L L +L L
Sbjct: 460 ISTNGLERIMKLPQLSTLNL 479
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 39/242 (16%)
Query: 28 FRDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD---VTDSGLIHLK-DCSN 82
R C + DL + GVN + S G +L LS D ++D L H+ +
Sbjct: 267 LRSCWQVSDLGIAHLAGVNRE------SAGGNLALEHLSLQDCQRLSDEALRHVSIGLTT 320
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+S++ +FC+ I+D GL+HL +S+L L+ R + I+ GM A
Sbjct: 321 LKSINLSFCVCITDSGLKHLAKMSSLRELNLRSCDNISDIGMAYLA-------------- 366
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSGIAYL- 200
+G ++ SL++ +C+ I D + +S GL NLK L +S +++D GI +
Sbjct: 367 ---------EGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISDEGICKIA 417
Query: 201 KGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESL 257
K L L LN+ C +T L +++ ++ L ++L C ++S +G E+ +L L +L
Sbjct: 418 KTLHDLETLNIGQCSRLTDKGLYTIAESMKHLKCIDLYGCTRISTNGLERIMKLPQLSTL 477
Query: 258 NL 259
NL
Sbjct: 478 NL 479
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 40/246 (16%)
Query: 251 LTNLESLNLDSC-GIGDEGLVNLTGLC---------NLK-CLELSDTQVGSSGLRHLSGL 299
+ NLE+LNL C I D GL+N C NL C ++SD +G R + L
Sbjct: 180 VPNLEALNLSGCYNITDVGLIN--AFCQEYATLIELNLSLCKQVSDISLG----RIVQYL 233
Query: 300 TNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-------- 348
NLE + L I++G L +A L LK L+L + Q++D G+A L +
Sbjct: 234 KNLEHLELGGCCNITNGGLLCIAWNLKKLKRLDLRSCWQVSDLGIAHLAGVNRESAGGNL 293
Query: 349 GLTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLN 402
L HL L R++D ++ L+S+ +C +TD+G+KH+ +SSL LN
Sbjct: 294 ALEHLSLQDCQRLSDEALRHVSIGLTTLKSINLSFCVC---ITDSGLKHLAKMSSLRELN 350
Query: 403 LSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTA 459
L N++D + L G + + SL+VS +I L H+ + L NL+ L+L +C+++
Sbjct: 351 LRSCDNISDIGMAYLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLKLLSLSACQISD 410
Query: 460 NDIKRL 465
I ++
Sbjct: 411 EGICKI 416
>gi|222617264|gb|EEE53396.1| hypothetical protein OsJ_36445 [Oryza sativa Japonica Group]
Length = 625
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 223/473 (47%), Gaps = 47/473 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNFC 91
++ +CL + GV + +D + + L +VDLS D L + L+ L C
Sbjct: 73 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 132
Query: 92 IQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVKLDLERCTRIHGGLV 149
+ ++D GL + G L LS + I+ G+ + + L LD+ + L
Sbjct: 133 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA--------- 198
++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G+A
Sbjct: 193 SISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFL 252
Query: 199 ---------------YLKGLQKL----TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+L L KL T+L L+G V+++ L ++ +L + L++C
Sbjct: 253 QKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCN 312
Query: 240 -LSDDGCEKF-SRLTNLESLNLDSCGI-GDEGLVNLTGLCNL-KCLEL-SDTQVGSSGLR 294
++D+G ++ ++L ++L C + + L ++ C + + L L S + + GL
Sbjct: 313 GVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLE 372
Query: 295 HLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LT 351
++ NL+ I+L+ G++D +L+ LA S L L L I+D GLA ++S G L
Sbjct: 373 QIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLI 432
Query: 352 HLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL+ ITD G A L N K ++ L +C +TD+G+ H+ L LT L L
Sbjct: 433 ELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNLELRCLVR 492
Query: 409 LTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 493 ITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 545
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 126/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 366 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 425
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 426 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 462
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ V C
Sbjct: 463 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 505
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
+L ++L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 506 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 557
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ G L+KL LS LKS+
Sbjct: 558 CLQ--DVK-----MVHLSWVS-IEGFEMALRAAC-GRLKKLKMLSGLKSV 598
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 185/421 (43%), Gaps = 58/421 (13%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
C L+++D + C+ D L + L LS + +T G+
Sbjct: 96 CPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKCLGVTDMGLAKV------------ 143
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIA 198
+ G +LE L++KWC I+D + LS + L+SL IS KV + +
Sbjct: 144 -----------VVGCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLR 192
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDS--LSALG----SLFYLNLNRCQLSD--------DG 244
+ L+KL L + V +C+D L LG SL ++++RC DG
Sbjct: 193 SISSLEKLEELAM----VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDG 248
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLE 303
+L +SL+ + L NL L + L L L +V SS L + G NL
Sbjct: 249 HNFLQKLNAADSLH----EMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLV 304
Query: 304 SINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLT-HLDLFG-A 358
I LS G++D + L S L+ ++L +T+ L ++ + HL L +
Sbjct: 305 EIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCS 364
Query: 359 RITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I++ G + + NL+ +++ G+ DA ++H+ S L +L L +++DK L I
Sbjct: 365 SISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFI 424
Query: 418 SGLTG-LVSLNVSN-SRITSAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS-RDLPN 472
S G L+ L++ + IT GL L K ++ L L C K+T + + L S +L N
Sbjct: 425 SSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTN 484
Query: 473 L 473
L
Sbjct: 485 L 485
>gi|428163352|gb|EKX32427.1| hypothetical protein GUITHDRAFT_121393 [Guillardia theta CCMP2712]
Length = 1894
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 161/356 (45%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + +N +T+ FAGL +L L L GL L SL +
Sbjct: 232 GLASLQTL-YLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLYLS 290
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T GL +L+ L +S +K+T GL L L L G +T+
Sbjct: 291 Y-NELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETV 349
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L SL L L+ +L+ F+ L +L++L L S + GL +L+ L L
Sbjct: 350 FTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYL 409
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D ++ S +GLT+L+S+ LS ++ GL+SL++L L + ++T
Sbjct: 410 YDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATV 469
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L L L+ +T A +L++L + LT L+SL L L
Sbjct: 470 FNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYL 529
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S N LT + +GL L +L +S + +TS L +L++L L S ++T+
Sbjct: 530 SGN-ELTSVPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTS 584
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 164/358 (45%), Gaps = 3/358 (0%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL++L +L + +N +T+ FAGL +L L L GL L++L
Sbjct: 494 FNGLASLQTL-YLSSNELTSIPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLY 552
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N +T +GL +L++L +S +++T GL L L L +T+
Sbjct: 553 LS-GNELTSVPETVFAGLASLQTLYLSSNELTSIPETVFAGLASLQYLYLSSNKLTSVPE 611
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ L SL L L+ +L+ F+ L +L++L L + GL +L+ L
Sbjct: 612 TVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYNKLTSVPATVFAGLASLRSL 671
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L D ++ S +GL +L S++L F ++ AGL+SL++L L ++T
Sbjct: 672 GLYDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETVFAGLTSLQTLYLYDNELTSVPE 731
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L L +L L ++T ++++L + G LT L+SL L
Sbjct: 732 TVFNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFNGLASLQYL 791
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N+S N LT + GL L +L++S +++TS L +LRSL L++ ++T+
Sbjct: 792 NVSSN-ELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTS 848
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 157/356 (44%), Gaps = 3/356 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L L + +N +T+ FAGL +L L L GL L++L +
Sbjct: 304 GLASLQYL-YLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPETVFTGLASLQTLYLS 362
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N +T +GL +L++L +S +K+T GL L L L +T+
Sbjct: 363 -SNKLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYLYLYDNELTSIPATV 421
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L SL L L+ +L+ F L +L++L L S + GL +L+ L L
Sbjct: 422 FAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYL 481
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D ++ S +GL +L+++ LS ++ AGL+SL++L L ++T
Sbjct: 482 YDNELTSIPATGFNGLASLQTLYLSSNELTSIPETVFAGLASLQTLYLSGNELTSVPETV 541
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L L L G +T +L++L + LT L+SL L L
Sbjct: 542 FAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSSNELTSIPETVFAGLASLQYLYL 601
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S N LT + +GL L +L +S + +TS L +L++L L K+T+
Sbjct: 602 SSN-KLTSVPETVFAGLASLQTLYLSYNELTSVPETVFNGLASLQTLYLSYNKLTS 656
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 7/358 (1%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL++L L + NN +T+ F GL +L L L + T + + N GL L SL
Sbjct: 160 GLASLQYL-YLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFN--GLASLRSLY 216
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N +T +GL +L++L + +++T GL L L L +T+
Sbjct: 217 LD-NNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPE 275
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
L SL L L+ +L+ F L +L+ L L S + GL +L+ L
Sbjct: 276 TVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTL 335
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
LS ++ S +GL +L+++ LS ++ GL+SL++L L + ++T
Sbjct: 336 YLSGNELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTSVPA 395
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L L +L L+ +T A +L+SL + LT L+SL L
Sbjct: 396 TVFAGLASLQYLYLYDNELTSIPATVFAGLTSLQSLYLSSNKLTSVPETVFDGLASLQTL 455
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LS N LT + +GL L +L + ++ +TS L +L++L L S ++T+
Sbjct: 456 YLSSN-KLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLYLSSNELTS 512
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 2/309 (0%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L+ L + N +T +GL +++ L +S +++T GL L L
Sbjct: 110 FAGLASLQYLYLS-SNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFAGLASLQYLY 168
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L+ +T+ + L SL L L+ +L+ F+ L +L SL LD+ +
Sbjct: 169 LDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDNNELTSVPET 228
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
GL +L+ L L D ++ S +GL +L+++ LS+ ++ GL+SL+SL
Sbjct: 229 VFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFDGLASLRSLY 288
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L ++T L L +L L ++T A +L++L + G LT
Sbjct: 289 LSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSGNELTSVPET 348
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L+SL L LS N LT + +GL L +L +S++++TS L +L+ L
Sbjct: 349 VFTGLASLQTLYLSSN-KLTSVPETVFNGLASLQTLYLSSNKLTSVPATVFAGLASLQYL 407
Query: 451 TLESCKVTA 459
L ++T+
Sbjct: 408 YLYDNELTS 416
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 1/294 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N +T +GL +L+ L +S +K+T GL + +L L G +T+ +
Sbjct: 100 NKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNELTSVPETVFA 159
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L SL YL L+ +L+ F+ L +L++L L S + GL +L+ L L +
Sbjct: 160 GLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLASLRSLYLDN 219
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++ S +GL +L+++ L ++ AGL+SL++L L ++T
Sbjct: 220 NELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKLTSVPETVFD 279
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L L L L +T +L+ L + LT L+SL L LS
Sbjct: 280 GLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSNKLTSVPATVFAGLTSLQTLYLSG 339
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N LT + +GL L +L +S++++TS L +L++L L S K+T+
Sbjct: 340 N-ELTSVPETVFTGLASLQTLYLSSNKLTSVPETVFNGLASLQTLYLSSNKLTS 392
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 180/405 (44%), Gaps = 8/405 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL ++ LSG+++T ++LQ+L + +++ GL++L +L + +
Sbjct: 330 TSLQTLYLSGNELTSVPETVFTGLASLQTLYLS-SNKLTSVPETVFNGLASLQTL-YLSS 387
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N +T+ FAGL +L L L T I + GL L+SL + N +T
Sbjct: 388 NKLTSVPATVFAGLASLQYLYLYDNELTSIPATV--FAGLTSLQSLYLS-SNKLTSVPET 444
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
GL +L++L +S +K+T GL L L L +T+ + L SL L
Sbjct: 445 VFDGLASLQTLYLSSNKLTSVPATVFNGLASLQTLYLYDNELTSIPATGFNGLASLQTLY 504
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L+ +L+ F+ L +L++L L + GL +L+ L LS ++ S
Sbjct: 505 LSSNELTSIPETVFAGLASLQTLYLSGNELTSVPETVFAGLASLQTLYLSGNELTSVPET 564
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+GL +L+++ LS ++ AGL+SL+ L L + ++T L L L
Sbjct: 565 VFAGLASLQTLYLSSNELTSIPETVFAGLASLQYLYLSSNKLTSVPETVFAGLASLQTLY 624
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L +T +L++L + LT L+SL L L N LT
Sbjct: 625 LSYNELTSVPETVFNGLASLQTLYLSYNKLTSVPATVFAGLASLRSLGLYDN-KLTSVPA 683
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ +GL L SL++ + +TS L +L++L L ++T+
Sbjct: 684 TVFAGLASLRSLSLDFNELTSIPETVFAGLTSLQTLYLYDNELTS 728
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 158/355 (44%), Gaps = 3/355 (0%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GL++L +L + N +T+ F GL +L L L GL L SL +
Sbjct: 616 GLASLQTL-YLSYNELTSVPETVFNGLASLQTLYLSYNKLTSVPATVFAGLASLRSLGL- 673
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N +T +GL +L+SL + +++T GL L L L +T+
Sbjct: 674 YDNKLTSVPATVFAGLASLRSLSLDFNELTSIPETVFAGLTSLQTLYLYDNELTSVPETV 733
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L SL YL L+ +L+ F+ L ++++L L + GL +L+ L +
Sbjct: 734 FNGLASLQYLYLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFNGLASLQYLNV 793
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S ++ S GL +L++++LS+ ++ AGL+SL+SL LD ++T
Sbjct: 794 SSNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPETV 853
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L L LDL R+ + + +L L + L+ + L SL L L
Sbjct: 854 FAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEALYL 913
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N L D + ++ + L+ L +L + N+R++S L L +L++ ++T
Sbjct: 914 HSN-QLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLT 967
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 167/392 (42%), Gaps = 38/392 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL++L L + NN +T+ FAGL ++ L L T + + N GL L+
Sbjct: 734 FNGLASLQYL-YLDNNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFN--GLASLQY 790
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LN+ N +T GL +L++L +S +K+T GL L L L+ +T+
Sbjct: 791 LNVS-SNELTSVPETVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSV 849
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSR------------------------LTNLE 255
+ L SL+ L+L+ +L+ F L +LE
Sbjct: 850 PETVFAGLDSLWRLDLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLE 909
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
+L L S + D L +L L L + ++ S +GL L ++++ ++
Sbjct: 910 ALYLHSNQLADISSDVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRL 969
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
S GLS+L +L+L +T ALT L + LDL ++ D A L N LR
Sbjct: 970 SPGAFQGLSTLATLDLHDNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLR 1029
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN---VSNSR 432
+L + LT ++ L+ L L LS N + E+ +GL L SL + ++
Sbjct: 1030 NLSLDDNQLTSLSAGVLEPLAGLEYLWLSHN-----RLAEVPAGLGSLASLRYLLLDHNP 1084
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+TS + L +LR+L + S A +R
Sbjct: 1085 LTSLDVSLLDNKPDLRALGVNSDAFKALSAQR 1116
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 162/375 (43%), Gaps = 31/375 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLN 161
GL++L SLS N +T+ FAGL +L L L T + + N GL L+ L
Sbjct: 688 GLASLRSLSLDFNE-LTSIPETVFAGLTSLQTLYLYDNELTSVPETVFN--GLASLQYLY 744
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N +T +GL ++++L +S +++T GL L LN+ +T+
Sbjct: 745 LD-NNKLTSIPETVFAGLASVQTLYLSGNELTSVPETVFNGLASLQYLNVSSNELTSVPE 803
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
L SL L+L+ +L+ F+ L +L SL LD+ + GL +L L
Sbjct: 804 TVFDGLASLQTLDLSYNKLTSVPETVFAGLASLRSLYLDNNELTSVPETVFAGLDSLWRL 863
Query: 282 ELSDTQVGSSGLRHLS------------------------GLTNLESINLSFTGISDGSL 317
+L ++ S L GL +LE++ L ++D S
Sbjct: 864 DLHSNRLASLALSLFYDCHDLMELYLNNNLLSGLLPGSLDGLVSLEALYLHSNQLADISS 923
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
A LSSL +L L +++ A L LT L + R+T + L +L
Sbjct: 924 DVFAQLSSLTTLTLHNNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPGAFQGLSTLATL 983
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ LT + L ++ L+LS N L D + + LTGL +L++ ++++TS
Sbjct: 984 DLHDNHLTSLTAGALTGLDAMRALDLSSN-KLADLPAQALHNLTGLRNLSLDDNQLTSLS 1042
Query: 438 LRHLKPLKNLRSLTL 452
L+PL L L L
Sbjct: 1043 AGVLEPLAGLEYLWL 1057
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 124/279 (44%), Gaps = 1/279 (0%)
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
+L +++S +K+T GL L L L +T+ + L S+ L L+ +L
Sbjct: 91 SLTEIRLSGNKLTSVPATVFAGLASLQYLYLSSNKLTSIPETVFAGLASIRVLILSGNEL 150
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+ F+ L +L+ L LD+ + GL +L+ L LS ++ S +GL
Sbjct: 151 TSVPETVFAGLASLQYLYLDNNKLTSVPATVFNGLASLQTLYLSSNKLTSVPETVFNGLA 210
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L S+ L ++ AGL+SL++L L ++T L L L L ++
Sbjct: 211 SLRSLYLDNNELTSVPETVFAGLASLQTLYLYDNELTSIPATVFAGLASLQTLYLSYNKL 270
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
T +LRSL + LT L+SL L LS N LT + +GL
Sbjct: 271 TSVPETVFDGLASLRSLYLSYNELTSVPETVFDGLASLQYLYLSSN-KLTSVPATVFAGL 329
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
T L +L +S + +TS L +L++L L S K+T+
Sbjct: 330 TSLQTLYLSGNELTSVPETVFTGLASLQTLYLSSNKLTS 368
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 58/367 (15%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVN 150
Q++D + LS+LT+L+ NN +++ AFAGL L L + R TR+ G
Sbjct: 917 QLADISSDVFAQLSSLTTLTLH-NNRLSSLSPGAFAGLARLTTLSIHHNRLTRLSPG--A 973
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLT 207
+GL L +L++ N +T L+GL +++L +S +K+ D + L GL+ L+
Sbjct: 974 FQGLSTLATLDLH-DNHLTSLTAGALTGLDAMRALDLSSNKLADLPAQALHNLTGLRNLS 1032
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL-------TNLESLN-- 258
L + + ++A L+ L+ L L +L+ NR G + L L SL+
Sbjct: 1033 LDDNQLTSLSAGVLEPLAGLEYL-WLSHNRLAEVPAGLGSLASLRYLLLDHNPLTSLDVS 1091
Query: 259 -------LDSCGIGDEGLVNLTG--------LCNLKCLELSDTQVGSSG---LRHLSGLT 300
L + G+ + L+ L L + D Q S+ L LS LT
Sbjct: 1092 LLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELWLCKSDDDQDQSAAGELLDKLSQLT 1151
Query: 301 NLESINLSFTGISDGSLRKLAG---------------------LSSLKSLNLDARQITDT 339
L + I G L L+ L SL+SL L +T
Sbjct: 1152 GLYLFGFDQSLIHAGMLSSLSSVRVLWLEDNLLDQLPPGTFDQLPSLQSLYLIHNGLTAV 1211
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+AAL++L+GLT L + IT A R+ LR+L++ G ++ + +L ++
Sbjct: 1212 PVAALSNLSGLTELHIVNDGITRVPAGAFRSLSGLRTLDLSGNLISSIEAEAFDNLDNVR 1271
Query: 400 LLNLSQN 406
L+LS N
Sbjct: 1272 QLDLSNN 1278
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 143/350 (40%), Gaps = 68/350 (19%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLN 161
GL+ LT+LS N +T AF GL L LDL T + G L GL + +L+
Sbjct: 952 GLARLTTLSIHHNR-LTRLSPGAFQGLSTLATLDLHDNHLTSLTAG--ALTGLDAMRALD 1008
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD---------SGIAYLK----------- 201
+ N + D + L LT L++L + +++T +G+ YL
Sbjct: 1009 LS-SNKLADLPAQALHNLTGLRNLSLDDNQLTSLSAGVLEPLAGLEYLWLSHNRLAEVPA 1067
Query: 202 ---GLQKLTLLNLEGCPVTA---ACLDS---LSALG----SLFYLNLNR----------- 237
L L L L+ P+T+ + LD+ L ALG + L+ R
Sbjct: 1068 GLGSLASLRYLLLDHNPLTSLDVSLLDNKPDLRALGVNSDAFKALSAQRPSVLETLLELW 1127
Query: 238 -CQLSDDG--------CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-- 286
C+ DD +K S+LT L D I G+ L+ L +++ L L D
Sbjct: 1128 LCKSDDDQDQSAAGELLDKLSQLTGLYLFGFDQSLI-HAGM--LSSLSSVRVLWLEDNLL 1184
Query: 287 -QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
Q+ L L +L I+ T + +L L+GL+ L +N IT A
Sbjct: 1185 DQLPPGTFDQLPSLQSLYLIHNGLTAVPVAALSNLSGLTELHIVN---DGITRVPAGAFR 1241
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
SL+GL LDL G I+ A N N+R L++ L V ++ L
Sbjct: 1242 SLSGLRTLDLSGNLISSIEAEAFDNLDNVRQLDLSNNRLVMLDVAELRGL 1291
>gi|290977818|ref|XP_002671634.1| predicted protein [Naegleria gruberi]
gi|284085204|gb|EFC38890.1| predicted protein [Naegleria gruberi]
Length = 359
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 160/338 (47%), Gaps = 10/338 (2%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD-FNFCIQISDGGLEHL 102
V+ +W +VI + L++ D G L++ NLQ D F + E +
Sbjct: 6 VSKQWFNVIRNGIKHSLTIR---KDTKLKGQF-LENVENLQVFDKFRLPNRFDCEIFESM 61
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLN 161
+ L+ + + + I ++G K AGL NL + ++ + L L L +L L+
Sbjct: 62 KKLTKV----YLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
I N IT ++ LS L+ L L I+ ++ TD + + ++L LN+ ++
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ +S L L L +N Q+ G + S + L+ L+ +G+ G+ ++ + L L
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+ +T++G+SG +++ L L+ +++S+ GI++ + L+ L L LN+ I + L
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ + LT+LD+ I D G Y+ K L+ + I
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGI 335
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 6/286 (2%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F + L K+ L T G L GL L +++ N + + LS L+ L L
Sbjct: 58 FESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLS 117
Query: 187 I-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I S + +T G+ YL L KLT L + G T + +S+ L LN+ +SD
Sbjct: 118 IGSKNNITYEGVEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSA 177
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
E S L L L +++ IG +G ++G+ LK L S T++G +G++H+ +T L +
Sbjct: 178 EYISNLDELTVLVINNNQIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHL 237
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ T I + + + L L+ L++ I + + L+ L LT L++ G+ I +
Sbjct: 238 YICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFLNISGSAIDNLAL 297
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQN 406
++ L L++ G+ D G+ +I + L L LS+N
Sbjct: 298 TFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRN 343
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 283 LSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTG 340
LS + S G ++L+GL NL I++ S+ + SL L+ LS L L++ ++ IT G
Sbjct: 69 LSSETIDSKGAKYLAGLNNLTDIHVDSYNNFGNESLYYLSKLSQLTKLSIGSKNNITYEG 128
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ L+ L+ LT+L + G TD + +FK L++L I ++D ++I +L LT+
Sbjct: 129 VEYLSQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTV 188
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L ++ N + K + ISG+ L L+ S +++ G++H+ + L L + + K+
Sbjct: 189 LVINNN-QIGSKGAKFISGMKQLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKI 244
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 125/282 (44%), Gaps = 29/282 (10%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG--S 229
D + + L + +S + G YL GL LT +++ DS + G S
Sbjct: 54 DCEIFESMKKLTKVYLSSETIDSKGAKYLAGLNNLTDIHV----------DSYNNFGNES 103
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQV 288
L+YL S+L+ L L++ S I EG+ L+ L L L ++ +
Sbjct: 104 LYYL---------------SKLSQLTKLSIGSKNNITYEGVEYLSQLSKLTYLCITGNET 148
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
++ +S L+++N+ ISD S ++ L L L ++ QI G ++ +
Sbjct: 149 TDEQVKLISSFKQLKTLNIYSNLISDKSAEYISNLDELTVLVINNNQIGSKGAKFISGMK 208
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L ++ ++G ++ L L IC + ++G K+I L L LL++S N
Sbjct: 209 QLKQLSDSYTKLGETGVKHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQLLDISYN-G 267
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ ++ +EL+S L L LN+S S I + L + + L L
Sbjct: 268 INNEIVELLSQLDQLTFLNISGSAIDNLALTFINKMNQLTYL 309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 113/242 (46%), Gaps = 32/242 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ S L + ++G++ TD + + L++L+ + ISD E++ L LT L
Sbjct: 133 SQLSKLTYLCITGNETTDEQVKLISSFKQLKTLNI-YSNLISDKSAEYISNLDELTVLVI 191
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
NN I ++G K +G+ L +L + T++ ++ +
Sbjct: 192 N-NNQIGSKGAKFISGMKQLKQLS-DSYTKL------------------------GETGV 225
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K + +T L L I +K+ +SG + L++L LL++ + ++ LS L L +L
Sbjct: 226 KHICEMTQLTHLYICNTKIGNSGAKNIIKLKQLQLLDISYNGINNEIVELLSQLDQLTFL 285
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK-----CLELSDTQV 288
N++ + + +++ L L++ GI DEGL+ ++ + LK L+LS Q+
Sbjct: 286 NISGSAIDNLALTFINKMNQLTYLDVSYNGINDEGLIYISKMKPLKQVGIGFLQLSRNQM 345
Query: 289 GS 290
GS
Sbjct: 346 GS 347
>gi|241724224|ref|XP_002413721.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215507537|gb|EEC17029.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 315
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 160/315 (50%), Gaps = 44/315 (13%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
V+D GL +L NL SLD + C+ ++D GLEH+ +S+L L+ +T+Q M
Sbjct: 12 VSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGCEDLTSQSMFHL 71
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---GLTNLKS 184
A +L L I +CN I D+ + ++ GL +L +
Sbjct: 72 A-----------------------TARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTT 108
Query: 185 LQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ 239
L ++ +TD G++ + + L+ LT LN+ C + D +S + + L ++N+ C
Sbjct: 109 LNVNACPITDVGLSVVAEKLRDLTALNISECEYVSK--DGISVVAANLRKLRFINMRLCT 166
Query: 240 -LSDDGCEKFSRLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L++ + +R+++LE +NL C G G + + G ++ L++S T +G +GLR
Sbjct: 167 GLTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLR 226
Query: 295 HLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+++ G+ L S++L ISD L ++A L +L +L + +ITD G+ + +L L
Sbjct: 227 YIAQGMQKLRSLSLCGCLISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 351 THLDLFG-ARITDSG 364
+DL G +RIT +G
Sbjct: 287 RQIDLKGCSRITSAG 301
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 140/266 (52%), Gaps = 20/266 (7%)
Query: 230 LFYLNLNRCQL-SDDGCEKFS-RLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 286
L YL L C L SD G E S RL NL SL+L C + D GL ++ + +LK L L
Sbjct: 1 LEYLGLEDCALVSDLGLEYLSLRLKNLVSLDLSMCLSVTDAGLEHIAKISSLKKLTLLGC 60
Query: 287 Q-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKL---AGLSSLKSLNLDARQITDTG 340
+ + S + HL+ L + +S+ I D + + GL SL +LN++A ITD G
Sbjct: 61 EDLTSQSMFHLATARFRLNCLIISYCNQIEDTGIHMINRGQGLVSLTTLNVNACPITDVG 120
Query: 341 LAALTS-LTGLTHLDLFGARIT--DSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDL 395
L+ + L LT L++ D + N + LR ++ +C G LT+ +KH+ +
Sbjct: 121 LSVVAEKLRDLTALNISECEYVSKDGISVVAANLRKLRFINMRLCTG-LTNISLKHLARM 179
Query: 396 SSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLT 451
SSL ++NL +T K + ++ G + ++ L+VS + I GLR++ + ++ LRSL+
Sbjct: 180 SSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRYIAQGMQKLRSLS 239
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
L C ++ + R+ +R+L L + +
Sbjct: 240 LCGCLISDKGLTRI-ARNLHALNTLK 264
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 20 LTEVSLEAF-RDCALQDLCLGQYPGVNDKWMDVIAS-QG-SSLLSVDLSGSDVTDSGLIH 76
LT +SL+ R +L+ + L + K M +AS +G SS+L +D+S + + D+GL +
Sbjct: 168 LTNISLKHLARMSSLEVINLKGCTKITGKGMAFMASGEGQSSVLELDVSFTSIGDTGLRY 227
Query: 77 L-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINL 133
+ + L+SL C+ ISD GL + R L L +L R + IT G+K A L L
Sbjct: 228 IAQGMQKLRSLSLCGCL-ISDKGLTRIARNLHALNTLKISRCSRITDNGIKVVACNLKRL 286
Query: 134 VKLDLERCTRI 144
++DL+ C+RI
Sbjct: 287 RQIDLKGCSRI 297
>gi|149175123|ref|ZP_01853746.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
gi|148846101|gb|EDL60441.1| hypothetical protein PM8797T_25626 [Planctomyces maris DSM 8797]
Length = 1079
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 9/264 (3%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN---- 161
+ + R + +G++ F + K R R+ V L+ L +LE
Sbjct: 24 EKVAPVEARTPEQLAVEGLRRFCTNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 162 -IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
C + D + + LTNL +L +S S V DSG++ LK L KL L L+ VT A
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L LS+L L L+L ++D G + + L NLE L L + D GL +LT L LK
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L+ T + S L L+ L +LE ++L+ T + + L+GL+ LK L + Q T G
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEI---QYTGLG 260
Query: 341 LAALTSLT-GLTHLDLFGARITDS 363
+++ L L ++F +D+
Sbjct: 261 ESSIQQLKRNLEKTNIFTGEKSDA 284
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 21/246 (8%)
Query: 214 CPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSRLTN----LESLN-------LDS 261
PV A + L+ G F NL Q + DG + RL+ LE+LN LD
Sbjct: 27 APVEARTPEQLAVEGLRRFCTNL---QTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDY 83
Query: 262 CGI-----GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
+ GDE L+ + L NL L LS++ VG SGL L L LE + L T ++D
Sbjct: 84 LAMVCPHLGDEALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAG 143
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
L+ L+ L LK L+L +TD G+ L L L L L G +++D+G L K L+
Sbjct: 144 LQHLSSLKQLKVLSLRNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKI 203
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + +T + + + L SL L+L++ L ++ +SGLT L L + + + +
Sbjct: 204 LYLARTAITGSQLSALNTLESLEHLSLNR-TKLQPVVVDALSGLTQLKGLEIQYTGLGES 262
Query: 437 GLRHLK 442
++ LK
Sbjct: 263 SIQQLK 268
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 24/218 (11%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L + C + D + Y++ L L L L S SA+G
Sbjct: 75 LEQFPRLDYLAMVCPHLGDEALLYIRDLTNLDTLML-----------SESAVG------- 116
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
D G +L LE L LD+ + D GL +L+ L LK L L + V G++
Sbjct: 117 ------DSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQLKVLSLRNLNVTDQGMQT 170
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ L NLE + LS T +SD L+ L L LK L L IT + L+AL +L L HL L
Sbjct: 171 LADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAITGSQLSALNTLESLEHLSL 230
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
++ L L+ LEI GL ++ ++ +K
Sbjct: 231 NRTKLQPVVVDALSGLTQLKGLEIQYTGLGESSIQQLK 268
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 287 QVGSSGLRHLSGLTNLES--------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
Q+ GLR TNL++ + LS ++ +L +L L L + + D
Sbjct: 36 QLAVEGLRRFC--TNLQTNKDGSARLVRLSKPHVTLEALNQLEQFPRLDYLAMVCPHLGD 93
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + LT L L L + + DSG + L+ L L + +TDAG++H+ L L
Sbjct: 94 EALLYIRDLTNLDTLMLSESAVGDSGLSCLKKLNKLERLYLDNTKVTDAGLQHLSSLKQL 153
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+L+L +N N+TD+ ++ ++ L L L +S ++++ AGL+ L LK L+ L L +T
Sbjct: 154 KVLSL-RNLNVTDQGMQTLADLNNLEVLFLSGTQVSDAGLKSLTELKQLKILYLARTAIT 212
Query: 459 ANDIKRLQS 467
+ + L +
Sbjct: 213 GSQLSALNT 221
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S V DSGL LK + L+ L + +++D GL+HL L L LS R N +T QG
Sbjct: 110 LSESAVGDSGLSCLKKLNKLERLYLD-NTKVTDAGLQHLSSLKQLKVLSLRNLN-VTDQG 167
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
M+ A L NL L L ++D+ +K L+ L LK
Sbjct: 168 MQTLADLNNLEVLFLS-------------------------GTQVSDAGLKSLTELKQLK 202
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L ++ + +T S ++ L L+ L L+L + +D+LS L L L + L +
Sbjct: 203 ILYLARTAITGSQLSALNTLESLEHLSLNRTKLQPVVVDALSGLTQLKGLEIQYTGLGES 262
Query: 244 GCEKFSRLTNLESLNL 259
++ R NLE N+
Sbjct: 263 SIQQLKR--NLEKTNI 276
>gi|195383050|ref|XP_002050239.1| GJ20310 [Drosophila virilis]
gi|194145036|gb|EDW61432.1| GJ20310 [Drosophila virilis]
Length = 542
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 206 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 247
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HL+
Sbjct: 248 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 307
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 308 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 367
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 368 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 427
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 428 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQ 487
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 488 CSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 536
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 236 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 295
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 296 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 355
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 356 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 398
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 399 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 458
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++
Sbjct: 459 SLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLS 518
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 519 SKGIDIIMKLPKLQKLNL 536
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 240 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLETLEL 298
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL L+ LNL + I+D G+ L + G L+
Sbjct: 299 GGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 354
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 355 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 413
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 414 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 466
>gi|290994276|ref|XP_002679758.1| predicted protein [Naegleria gruberi]
gi|284093376|gb|EFC47014.1| predicted protein [Naegleria gruberi]
Length = 205
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 1/201 (0%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L SLN+ GDE ++ + L L++S ++G G ++LS + L S+N+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I D + ++ L SLN+ QI ++ + LT L++ RI GA ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+ L SL+I G + D G K I ++ LT L++S N + D+ + IS + L+SLN+
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYN-RIGDEGAKFISEMKQLISLNIRG 179
Query: 431 SRITSAGLRHLKPLKNLRSLT 451
+RI G++++ +K L SLT
Sbjct: 180 NRIGDEGVKYISEMKQLTSLT 200
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 100/199 (50%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++L LN+ G +S + L L+++ ++ D+G + S + L SLN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IGDEG ++ L L + TQ+G + +S + L S+N+S I + ++
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SL++ +I D G ++ + LT LD+ RI D GA ++ K L SL I G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 383 GLTDAGVKHIKDLSSLTLL 401
+ D GVK+I ++ LT L
Sbjct: 181 RIGDEGVKYISEMKQLTSL 199
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 97/203 (47%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL IS ++ D + +++LT L++ G + LS + L LN+
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ D+G + S L SLN+ IG E ++ + L L +SD ++ G + +S
Sbjct: 61 EIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKWISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+++S I D + ++ + L SL++ +I D G ++ + L L++ G
Sbjct: 121 MRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGDEGAKFISEMKQLISLNIRGN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICG 381
RI D G Y+ K L SL G
Sbjct: 181 RIGDEGVKYISEMKQLTSLTYKG 203
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SLN+ + D ++ + LT LD+ G RI D GA YL K L SL I
Sbjct: 1 MKQLISLNISGNEFGDEEAKLISEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGEN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ D G K I + L LN+ C + + +LIS + L SLN+S++RI G +
Sbjct: 61 EIGDEGAKLISETRQLASLNI---CFTQIGIEEAKLISEMRQLTSLNISDNRICVEGAKW 117
Query: 441 LKPLKNLRSLTLESCKV------TANDIKRLQSRDLP 471
+ ++ L SL + ++ T +++K+L S D+
Sbjct: 118 ISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDIS 154
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 33/226 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+S+++SG++ D + + L SLD + +I D G ++L + L SL+ N
Sbjct: 4 LISLNISGNEFGDEEAKLISEMKQLTSLDISGN-RIGDEGAKYLSEMKQLISLNIGE-NE 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---SDMKP 175
I +G K + TR +L SLNI C T + K
Sbjct: 62 IGDEGAKLIS------------ETR------------QLASLNI----CFTQIGIEEAKL 93
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S + L SL IS +++ G ++ +++LT L++ G + ++S + L L++
Sbjct: 94 ISEMRQLTSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDI 153
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ ++ D+G + S + L SLN+ IGDEG+ ++ + L L
Sbjct: 154 SYNRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTSL 199
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G L + +L SLNI N I D K +S L SL I +++ + +++L
Sbjct: 42 GAKYLSEMKQLISLNI-GENEIGDEGAKLISETRQLASLNICFTQIGIEEAKLISEMRQL 100
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T LN+ + +S + L L+++ ++ D+G + S + L SL++ IGD
Sbjct: 101 TSLNISDNRICVEGAKWISEMRQLTSLDISGNRIGDEGAKTISEMKQLTSLDISYNRIGD 160
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
EG ++ + L L + ++G G++++S + L S L++ G+
Sbjct: 161 EGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLTS--LTYKGL 204
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF----------------------NFC 91
S+ L S+D+SG+ + D G +L + L SL+ N C
Sbjct: 23 SEMKQLTSLDISGNRIGDEGAKYLSEMKQLISLNIGENEIGDEGAKLISETRQLASLNIC 82
Query: 92 I-QISDGGLEHLRGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
QI G+E + +S LTSL+ +N I +G K + + L LD+ G
Sbjct: 83 FTQI---GIEEAKLISEMRQLTSLNI-SDNRICVEGAKWISEMRQLTSLDISGNRIGDEG 138
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ + +L SL+I + N I D K +S + L SL I +++ D G+ Y+ +++LT
Sbjct: 139 AKTISEMKQLTSLDISY-NRIGDEGAKFISEMKQLISLNIRGNRIGDEGVKYISEMKQLT 197
Query: 208 LLNLEG 213
L +G
Sbjct: 198 SLTYKG 203
>gi|259489824|ref|NP_001159243.1| uncharacterized protein LOC100304332 [Zea mays]
gi|223942967|gb|ACN25567.1| unknown [Zea mays]
gi|413920256|gb|AFW60188.1| hypothetical protein ZEAMMB73_234209 [Zea mays]
Length = 648
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 222/471 (47%), Gaps = 53/471 (11%)
Query: 38 LGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISD 96
L + GV + +D + + SL +VDLS D + L + L+ L + C+ ++D
Sbjct: 101 LARASGVGWRGLDALVAACPSLEAVDLSHCVAAGDREMAALAAAAGLRDLVMDKCLGVTD 160
Query: 97 GGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGL 154
GL + G L SLS + I+ G+ A L LD+ + L +L L
Sbjct: 161 VGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISYLKVTNESLRSLSTL 220
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQK-------- 205
KLE + + C + D ++ LS ++L+S+ ++ C V+ G+A L Q+
Sbjct: 221 EKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLASLMDGQRSLRKINVA 280
Query: 206 --------------------LTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQ-L 240
LT+L L+G + A+ +L A+GS L + L++C +
Sbjct: 281 HSLHEIEACVLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGSTCKNLVEIGLSKCNGV 337
Query: 241 SDDGCEKF-SRLTNLESLNLDSCGI-GDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHL 296
+DDG +R +L ++++ C + + L + C ++CL L V GL +
Sbjct: 338 TDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESCPFVSEKGLESI 397
Query: 297 SGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHL 353
+ L ++L+ I+L+ I+D +L++LA S L L L I+D GL +++ G L L
Sbjct: 398 ATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVYISANCGKLVEL 457
Query: 354 DLFG-ARITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
DL+ + +TD G AA K +R L +C +TD G+KH+ L L L L +T
Sbjct: 458 DLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEELANLELRCLVRVT 517
Query: 411 DKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 458
+ I+ G + LV L++ + AGL L + +NLR LT+ C+VT
Sbjct: 518 GVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVT 568
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 203/430 (47%), Gaps = 49/430 (11%)
Query: 11 FNELVYSRCL--TEVSLE--AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
+LV +CL T+V L A LQ L L ++D +D++A + L S+D+S
Sbjct: 147 LRDLVMDKCLGVTDVGLAKVAVGCPGLQSLSLKWCREISDIGVDLLAKKCPQLRSLDISY 206
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ L L L+ + C+ + D GL+ L S+L S+ R + +++ G+ +
Sbjct: 207 LKVTNESLRSLSTLEKLEDIAMVSCLFVDDDGLQMLSMCSSLQSIDVARCHHVSSLGLAS 266
Query: 127 FA-GLINLVKL-------DLERCT--------------RIHGGLV---NLKGL----MKL 157
G +L K+ ++E C R+ G + NL+ + L
Sbjct: 267 LMDGQRSLRKINVAHSLHEIEACVLSKLSTIGETLTVLRLDGLEIFASNLQAIGSTCKNL 326
Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSK-VTDSGIAYL-KGLQKLTLLNLEGC 214
+ + CN +TD + L + +L+++ ++C +T++ +A + + +K+ L LE C
Sbjct: 327 VEIGLSKCNGVTDDGIVSLVARCRDLRTIDVTCCHLLTNAALAAIAENCRKIECLRLESC 386
Query: 215 P-VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
P V+ L+S++ L S L ++L C+++D ++ + + L L L C I DEGLV
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 272 LTGLCNLKCLELS---DTQVGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSL 326
++ C K +EL + V GL + SG + +NL + T I+DG L+ + GL L
Sbjct: 447 ISANCG-KLVELDLYRCSAVTDDGLAAVASGCKKMRMLNLCYCTQITDGGLKHVGGLEEL 505
Query: 327 KSLNLDA-RQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEICGG 382
+L L ++T G+ ++ + L LDL D + R +NLR L +
Sbjct: 506 ANLELRCLVRVTGVGITSIAVGCSSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYC 565
Query: 383 GLTDAGVKHI 392
+T G+ H+
Sbjct: 566 QVTGLGLCHL 575
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 52/245 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P V++K ++ IA+ S L +DL+ + D+ L L CS L L C ISD GL +
Sbjct: 387 PFVSEKGLESIATLCSDLKEIDLTDCRINDAALQQLASCSELLILKLGLCSSISDEGLVY 446
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R +A+T G+ A A G K+ L
Sbjct: 447 ISANCGKLVELDLYRCSAVTDDGLAAVA-----------------------SGCKKMRML 483
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD +K + GL L +L++ C +VT GI + GC
Sbjct: 484 NLCYCTQITDGGLKHVGGLEELANLELRCLVRVTGVGITSIA----------VGC----- 528
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCN 277
SL L+L RC DD G SR + NL L + C + GL +L G +
Sbjct: 529 --------SSLVELDLKRCYSVDDAGLWALSRYSQNLRQLTVSYCQVTGLGLCHLLG--S 578
Query: 278 LKCLE 282
L+CL+
Sbjct: 579 LRCLQ 583
>gi|83592173|ref|YP_425925.1| hypothetical protein Rru_A0837 [Rhodospirillum rubrum ATCC 11170]
gi|386348881|ref|YP_006047129.1| hypothetical protein F11_04310 [Rhodospirillum rubrum F11]
gi|83575087|gb|ABC21638.1| Leucine-rich repeat [Rhodospirillum rubrum ATCC 11170]
gi|346717317|gb|AEO47332.1| leucine-rich repeat-containing protein [Rhodospirillum rubrum F11]
Length = 1085
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 180/353 (50%), Gaps = 41/353 (11%)
Query: 98 GLEHL----RGLSNLTSLSF-----RRNNAITAQ---GMKAFAGLINLVKLDLERCTRIH 145
GLE + R L+ LT+L R + I+A+ + GL NL L L
Sbjct: 49 GLERIPDSIRELAELTALRLTCWDRARGSFISARLVTDLTPLTGLENLQGLFLSYTAVTD 108
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
L L G+ L+SL + +D+ PL+GL NL+S+ +S +++TD +A L GL+
Sbjct: 109 --LTPLTGIKSLQSLILSETQV---TDLTPLAGLKNLQSINLSATQITD--LAPLAGLEN 161
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN-LDSCGI 264
L L L VT L L+ L +L +L L ++ D + L L+SL LD G
Sbjct: 162 LQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRVID-----LTPLAGLKSLQSLDLSGT 214
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+ L GL +L+ L+L T+V + L L L +L+S+NLS T ++D L LAGL
Sbjct: 215 RVTNIAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRTPVTD--LAPLAGL 272
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
+L++L L +TD LA L L L ++DL G + D A L +NL+++++ G
Sbjct: 273 ENLQNLTLSYTTVTD--LAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTE 328
Query: 384 LTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+ D A + +++L +LTL +TD L ++GL L S++ S RITS
Sbjct: 329 VIDLAPLAGLENLQNLTL----SYTTVTD--LAPLAGLENLQSIDCSGCRITS 375
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 30/305 (9%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D+ PL+GL NL+ L +S + VTD + L G++ L L L VT L L+ L +L
Sbjct: 85 TDLTPLTGLENLQGLFLSYTAVTD--LTPLTGIKSLQSLILSETQVTD--LTPLAGLKNL 140
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
+NL+ Q++D + L NL++L L + D L L GL NL+ L L T+V
Sbjct: 141 QSINLSATQITD--LAPLAGLENLQNLTLSYTTVTD--LAPLAGLENLQHLILLGTRV-- 194
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTG 349
L L+GL +L+S++LS T +++ + L GL SL+SL+L ++TD L L SL
Sbjct: 195 IDLTPLAGLKSLQSLDLSGTRVTN--IAPLVGLKSLQSLDLRRTRVTDIAPLVGLKSLKS 252
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD----AGVKHIK----------DL 395
L L+L +TD A L +NL++L + +TD AG+++++ DL
Sbjct: 253 LQSLNLSRTPVTD--LAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQNIDLGGTEVIDL 310
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ L L QN +L + ++ L GL +L N++ S T L L L+NL+S+
Sbjct: 311 APLAGLENLQNIDLGGTEVIDLAPLAGLENLQNLTLSYTTVTDLAPLAGLENLQSIDCSG 370
Query: 455 CKVTA 459
C++T+
Sbjct: 371 CRITS 375
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 15/194 (7%)
Query: 58 SLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL S+DL + VTD + L+ LK +LQSL+ + ++D L L GL NL +L+
Sbjct: 227 SLQSLDLRRTRVTDIAPLVGLKSLKSLQSLNLSRT-PVTD--LAPLAGLENLQNLTL--- 280
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ T + AGL NL +DL I L L GL L+++++ I D+ PL
Sbjct: 281 SYTTVTDLAPLAGLENLQNIDLGGTEVID--LAPLAGLENLQNIDLGGTEVI---DLAPL 335
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GL NL++L +S + VTD +A L GL+ L ++ GC +T+ D L +L ++ +
Sbjct: 336 AGLENLQNLTLSYTTVTD--LAPLAGLENLQSIDCSGCRITSVP-DGLFDSPALRWVICS 392
Query: 237 RCQLSDDGCEKFSR 250
L+D E S+
Sbjct: 393 EGALADIPAEALSQ 406
>gi|427735495|ref|YP_007055039.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
gi|427370536|gb|AFY54492.1| Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC
7116]
Length = 396
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 169/320 (52%), Gaps = 49/320 (15%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+KPLSGLTNL ++ + +K++D + L L LT LN+ G ++ + L++L +L
Sbjct: 84 SDLKPLSGLTNLTNIDLWGNKISD--VKPLVNLTNLTNLNIGGNKISD--VKPLASLTNL 139
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD----EGLVNLTGLCNLKCLELSDT 286
L+L ++SD + LTNL L++ S I D E L NLT L
Sbjct: 140 TNLDLGGNKISD--VTPLASLTNLIRLDVYSNQISDINSLENLNNLTFL----------- 186
Query: 287 QVGSS---GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+VGS+ ++ + TNL + L ISD +R L+ L++L LNL + QI+D +
Sbjct: 187 RVGSNRIVDVKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLNLMSNQISD--IKP 242
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN- 402
+ SL L LDL +I+D A L N NL +L GL + +IK LS+LT L
Sbjct: 243 IASLNSLNSLDLDKNQISDIEA--LSNLTNLTTL-----GLDRNQIINIKPLSNLTKLRW 295
Query: 403 --LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L QN ++D ++ +S LT L L + +++I R +KPL NL L + +++N
Sbjct: 296 LFLRQN-QISD--IKPLSSLTNLRWLELKSNKI-----RDVKPLTNLAK--LRNLNLSSN 345
Query: 461 DIKRLQS-RDLPNLVSFRPE 479
I +QS +L NLV+F E
Sbjct: 346 QITNVQSLANLTNLVNFNVE 365
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 70/295 (23%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++DL G+ ++D + L +NL LD + QISD + L NL +L+F R
Sbjct: 137 TNLTNLDLGGNKISD--VTPLASLTNLIRLDV-YSNQISD-----INSLENLNNLTFLRV 188
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ +K FA NL +L LE N I SD++PL
Sbjct: 189 GSNRIVDVKQFANFTNLTELWLEE-------------------------NQI--SDVRPL 221
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S L NL L + ++++D + +++L SL L+L+
Sbjct: 222 SSLNNLTKLNLMSNQISD--------------------------IKPIASLNSLNSLDLD 255
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+ Q+SD E S LTNL +L LD I + + L+ L L+ L L Q+ S ++ L
Sbjct: 256 KNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLRQNQI--SDIKPL 309
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 350
S LTNL + L I D ++ L L+ L++LNL + QIT+ LA LT+L
Sbjct: 310 SSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSNQITNVQSLANLTNLVNF 362
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 179/381 (46%), Gaps = 78/381 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SSL + L ++D L L +NL ++D + +ISD ++ L L+NLT+L+ N
Sbjct: 71 SSLTELRLLTKQISD--LKPLSGLTNLTNIDL-WGNKISD--VKPLVNLTNLTNLNIGGN 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K A L NL LDL GG N I SD+ PL
Sbjct: 126 ---KISDVKPLASLTNLTNLDL-------GG------------------NKI--SDVTPL 155
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LTNL L + ++++D ++SL L +L +L +
Sbjct: 156 ASLTNLIRLDVYSNQISD--------------------------INSLENLNNLTFLRVG 189
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
++ D ++F+ TNL L L+ I D + L+ L NL L L Q+ S ++ +
Sbjct: 190 SNRIVD--VKQFANFTNLTELWLEENQISD--VRPLSSLNNLTKLNLMSNQI--SDIKPI 243
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ L +L S++L ISD + L+ L++L +L LD QI + + L++LT L L L
Sbjct: 244 ASLNSLNSLDLDKNQISD--IEALSNLTNLTTLGLDRNQIIN--IKPLSNLTKLRWLFLR 299
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L + NLR LE+ + D VK + +L+ L LNLS N +T+ ++
Sbjct: 300 QNQISD--IKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLSSN-QITN--VQS 352
Query: 417 ISGLTGLVSLNVSNSRITSAG 437
++ LT LV+ NV + I +
Sbjct: 353 LANLTNLVNFNVEENPINTKS 373
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD ++ + L++L SL +N ++A + L NL L L+R ++N+K
Sbjct: 236 QISD--IKPIASLNSLNSLDLDKN---QISDIEALSNLTNLTTLGLDR-----NQIINIK 285
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L L + SD+KPLS LTNL+ L++ +K+ D + L L KL LNL
Sbjct: 286 PLSNLTKLRWLFLRQNQISDIKPLSSLTNLRWLELKSNKIRD--VKPLTNLAKLRNLNLS 343
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+T + SL+ L +L N+ ++ C
Sbjct: 344 SNQITN--VQSLANLTNLVNFNVEENPINTKSC 374
>gi|281210637|gb|EFA84803.1| hypothetical protein PPL_01796 [Polysphondylium pallidum PN500]
Length = 739
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 32/286 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLL 209
G K+E LN+ + + I +D LS + +L+ + ++C TD G+ K ++ LT L
Sbjct: 335 GNAKIEELNLNYQHLIVSNDFLQNCLSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSL 394
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
L C VT + SL + L L+L +++D G S L L+ L+L +C I DEG+
Sbjct: 395 ILTDCAVTNVSVKSLKQMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSACNITDEGI 454
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ C T LE++NLS T +++ +++KL L L SL
Sbjct: 455 T-----FAIPC------------------FTKLETLNLSATSVTEKAIQKLTKL-PLVSL 490
Query: 330 NL-DARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTD 386
L + I + L +T L LD+FG +I +G L+ NL L++ G L+D
Sbjct: 491 YLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKLPGRDSLSD 550
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
A + H+ L ++ L+LS N+T T+ ++ L L L++SN++
Sbjct: 551 AHISHLNALQNVRRLDLSDYINIT--TIAPLNPLRYLCELSLSNTK 594
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 7/325 (2%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
+LQ + C +D G+E+ + + +LTSL + A+T +K+ ++ L +L L
Sbjct: 365 HLQKVSLVACFGFTDLGMENFKRMEHLTSLILT-DCAVTNVSVKSLKQMVKLEELSLRNT 423
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL L L++L+ L++ CN + + T L++L +S + VT+ I L
Sbjct: 424 KITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAIQKLT 483
Query: 202 GLQKLTLLNLEGCPVTA-ACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L L L CP+ L ++ G +L L++ ++ G RL NL L L
Sbjct: 484 KL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTVLKL 542
Query: 260 DSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ D + +L L N++ L+LSD + + + L+ L L ++LS T ISD S+
Sbjct: 543 PGRDSLSDAHISHLNALQNVRRLDLSDY-INITTIAPLNPLRYLCELSLSNTKISDDSID 601
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+ G S+L LNLD ++ D G++ L SL+ L L L I L L SL
Sbjct: 602 SIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGDCLTTLSQLITLTSLN 660
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNL 403
I + DA V + DL +LT ++L
Sbjct: 661 ISSNDIQDAKVLPLLDLPNLTYIDL 685
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 38/344 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L + L+ +++ C TD M+ + +L SL ++ VT+ + LK + KL L+
Sbjct: 360 LSRMYHLQKVSLVACFGFTDLGMENFKRMEHLTSLILTDCAVTNVSVKSLKQMVKLEELS 419
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSRLTNLESLNLDSCGIGDEGL 269
L +T + L LS+L L +L+L+ C ++D+G T LE+LNL + + ++ +
Sbjct: 420 LRNTKITDSGLTLLSSLVELKFLDLSACNITDEGITFAIPCFTKLETLNLSATSVTEKAI 479
Query: 270 VNLTGLC-------------------------NLKCLELSDTQVGSSGLRHLSGLTNLES 304
LT L LK L++ T++G +G +L L NL
Sbjct: 480 QKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQRLPNLTV 539
Query: 305 INLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L +SD + L L +++ L+L + I T +A L L L L L +I+D
Sbjct: 540 LKLPGRDSLSDAHISHLNALQNVRRLDL-SDYINITTIAPLNPLRYLCELSLSNTKISDD 598
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS----SLTLLNLSQNCNLTDKTLELISG 419
+ NL L + + D GV + LS SL + +C L +S
Sbjct: 599 SIDSIIGCSNLVILNLDRTRVRDIGVSKLISLSLHTLSLMATGIRGDC------LTTLSQ 652
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
L L SLN+S++ I A + L L NL + L + + +K
Sbjct: 653 LITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 131/291 (45%), Gaps = 32/291 (10%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSF 113
Q L + L + +TDSGL L L+ LD + C I+D G+ + + L +L+
Sbjct: 411 QMVKLEELSLRNTKITDSGLTLLSSLVELKFLDLSAC-NITDEGITFAIPCFTKLETLNL 469
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC-------------------------TRIHG-G 147
++T + ++ L LV L L C T+I G G
Sbjct: 470 SA-TSVTEKAIQKLTKL-PLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAG 527
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
VNL+ L L L + + ++D+ + L+ L N++ L +S + + IA L L+ L
Sbjct: 528 FVNLQRLPNLTVLKLPGRDSLSDAHISHLNALQNVRRLDLS-DYINITTIAPLNPLRYLC 586
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
L+L ++ +DS+ +L LNL+R ++ D G K L+ L +L+L + GI +
Sbjct: 587 ELSLSNTKISDDSIDSIIGCSNLVILNLDRTRVRDIGVSKLISLS-LHTLSLMATGIRGD 645
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
L L+ L L L +S + + + L L NL I+L T SL+
Sbjct: 646 CLTTLSQLITLTSLNISSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 52/275 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
+TE +++ L L L P + ++ + I G +L +D+ G+ + +G ++L+
Sbjct: 474 VTEKAIQKLTKLPLVSLYLSNCPMIGNQSLFFITLFGKTLKLLDIFGTKIGGAGFVNLQR 533
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
NL L +SD + HL L N+ RR LDL
Sbjct: 534 LPNLTVLKLPGRDSLSDAHISHLNALQNV-----RR--------------------LDLS 568
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ +NI + + PL+ L L L +S +K++D I
Sbjct: 569 ------------------DYINI--------TTIAPLNPLRYLCELSLSNTKISDDSIDS 602
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+ G L +LNL+ V + L +L SL L+L + D S+L L SLN+
Sbjct: 603 IIGCSNLVILNLDRTRVRDIGVSKLISL-SLHTLSLMATGIRGDCLTTLSQLITLTSLNI 661
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
S I D ++ L L NL ++L +TQ ++ L+
Sbjct: 662 SSNDIQDAKVLPLLDLPNLTYIDLRNTQAFTASLK 696
>gi|428317856|ref|YP_007115738.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
gi|428241536|gb|AFZ07322.1| Tetratricopeptide TPR_1 repeat-containing protein [Oscillatoria
nigro-viridis PCC 7112]
Length = 1221
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 150/287 (52%), Gaps = 29/287 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+ L QISD ++ L GL+NLT L
Sbjct: 105 SKFTNLRKLNLSINQITD--VQPLSGLTNLRYLTLT-SNQISD--VKPLSGLTNLTLLYL 159
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDS 171
N + + + F L L L + + T + GL NL+ L+ LN N I S
Sbjct: 160 ADNQIVDIKPLSKFTNLRRL-NLSVNQITDVQPLSGLTNLRSLV----LNF---NQI--S 209
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+KPLSGLTNL L + +++ D + L GL LT L+L + LS + L
Sbjct: 210 DVKPLSGLTNLTELFLEANQIVD--VKPLAGLTNLTGLSLASNQIVDVT--PLSTMTELN 265
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L L+ +++D + S LTNL L L S I D + L+GL NL L+LS Q+ +
Sbjct: 266 FLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTLDLSRNQIADA 321
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L+GLTNL +++LS I+D + LAGL L +L+L QI D
Sbjct: 322 T--PLAGLTNLTNLDLSRNQIADAT--PLAGLVYLTTLDLSRNQIPD 364
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 137/301 (45%), Gaps = 48/301 (15%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH--GGLVNL--------- 151
+ L+NLT LS RN + + + F L L L + + T + GL NL
Sbjct: 83 KTLTNLTELSLIRNQIVDIKPLSKFTNLRKL-NLSINQITDVQPLSGLTNLRYLTLTSNQ 141
Query: 152 ----KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------- 194
K L L +L + + D+KPLS TNL+ L +S +++TD
Sbjct: 142 ISDVKPLSGLTNLTLLYLADNQIVDIKPLSKFTNLRRLNLSVNQITDVQPLSGLTNLRSL 201
Query: 195 -------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S + L GL LT L LE + + L+ L +L L+L Q+ D
Sbjct: 202 VLNFNQISDVKPLSGLTNLTELFLEANQIV--DVKPLAGLTNLTGLSLASNQIVD--VTP 257
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
S +T L L L I D + L+GL NL L L+ Q+ ++ LSGLTNL +++L
Sbjct: 258 LSTMTELNFLYLSGNKIAD--VKPLSGLTNLIVLFLASNQIAD--VKPLSGLTNLPTLDL 313
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
S I+D + LAGL++L +L+L QI D L L LT LDL +I D A
Sbjct: 314 SRNQIADAT--PLAGLTNLTNLDLSRNQIADA--TPLAGLVYLTTLDLSRNQIPDGEAER 369
Query: 368 L 368
L
Sbjct: 370 L 370
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 39/217 (17%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++LS + +TD + L +NL+SL NF QISD ++ L GL+NLT L
Sbjct: 171 SKFTNLRRLNLSVNQITD--VQPLSGLTNLRSLVLNFN-QISD--VKPLSGLTNLTELFL 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITD- 170
N + +K AGL NL L L +V++ L + LN + N I D
Sbjct: 226 EANQIV---DVKPLAGLTNLTGLSL-----ASNQIVDVTPLSTMTELNFLYLSGNKIADV 277
Query: 171 -------------------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
+D+KPLSGLTNL +L +S +++ D+ L GL LT L+L
Sbjct: 278 KPLSGLTNLIVLFLASNQIADVKPLSGLTNLPTLDLSRNQIADA--TPLAGLTNLTNLDL 335
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ A L+ L L L+L+R Q+ D E+
Sbjct: 336 SRNQIADAT--PLAGLVYLTTLDLSRNQIPDGEAERL 370
>gi|315301494|ref|ZP_07872641.1| internalin A, partial [Listeria ivanovii FSL F6-596]
gi|313630136|gb|EFR98122.1| internalin A [Listeria ivanovii FSL F6-596]
Length = 759
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 123/384 (32%), Positives = 185/384 (48%), Gaps = 67/384 (17%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD L L + S L SL N Q++D L L+ L++LT L+ N IT
Sbjct: 103 LNFSYNQITD--LTPLANLSKLTSLVMNNN-QVAD--LTPLQNLTSLTDLTLFYN-KIT- 155
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A L NL L I G L + L LE+L+I N +TD +KPL
Sbjct: 156 -DVTPLANLTNLTTL------AITGNEISDLTPIGSLTNLEALSI--GNQVTD--IKPLD 204
Query: 178 GLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL+ L +S +K+TD S +A L LQ LTL N + L+ LG
Sbjct: 205 KLTNLEQLNLSDNKITDISPVAKLINLQSLTLDNNQ--------FSDLTPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL L+L S + D G L L NLK L L D Q+ S L +
Sbjct: 249 -------------ILTNLTELSLYSNHLSDIGT--LASLTNLKKLNLMDNQI--SNLAPI 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S LTNL +N+S ISD L+ ++ L++L L + Q+ D ++ ++SLT L L L+
Sbjct: 292 SNLTNLTDLNVSTNQISD--LKPISNLTNLTVLQVPTNQVED--ISPISSLTNLDFLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L N L+ L ++D V + +L++L L+ N ++D L
Sbjct: 348 SNQISDISP--LENLTKLKQLFFYDNKVSD--VSPLANLTTLQELSAGTN-QISD--LTP 400
Query: 417 ISGLTGLVSLNVSNSRITSAGLRH 440
++ LT L L + ++TS +++
Sbjct: 401 LAKLTRLTQLGLDKQKVTSQPVKY 424
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 51/287 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L N+ L S +++TD + L L KLT L + V A L L L SL L L
Sbjct: 97 LNNVTQLNFSYNQITD--LTPLANLSKLTSLVMNNNQV--ADLTPLQNLTSLTDLTLFYN 152
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+++D + LTNL +L + I D L + L NL+ L + + QV + ++ L
Sbjct: 153 KITD--VTPLANLTNLTTLAITGNEISD--LTPIGSLTNLEALSIGN-QV--TDIKPLDK 205
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
LTNLE +NLS I+D + +A L +L+SL LD Q +D L L LT LT L L+
Sbjct: 206 LTNLEQLNLSDNKITD--ISPVAKLINLQSLTLDNNQFSD--LTPLGILTNLTELSLYSN 261
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
++D G L + NL+ L + +++ L IS
Sbjct: 262 HLSDIGT--LASLTNLKKLNLMDNQISN---------------------------LAPIS 292
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
LT L LNVS ++I+ LKP+ NL +LT+ +V N ++ +
Sbjct: 293 NLTNLTDLNVSTNQIS-----DLKPISNLTNLTV--LQVPTNQVEDI 332
>gi|290992226|ref|XP_002678735.1| predicted protein [Naegleria gruberi]
gi|284092349|gb|EFC45991.1| predicted protein [Naegleria gruberi]
Length = 445
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 170/364 (46%), Gaps = 22/364 (6%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL ++ + G K L L KLD+ T G + + +L LNI +
Sbjct: 88 LEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEGAKFIGEMQQLTYLNI-Y 146
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTD--------SGIAYLKGLQKLTLLNLEGCPV 216
N +T ++ +S LTNL L + ++ G YL+ LQKLT L++ +
Sbjct: 147 GNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLTSLDIGYNQI 206
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+ + SL L + L +G S+L NL L++++ I DEG+V++ L
Sbjct: 207 GNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSINNNHIKDEGVVHICKLK 266
Query: 277 NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+L +T++ + G+ +S L + +++S I DG+ + L + L +L D +
Sbjct: 267 QLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRDGT-KFLGEMKQLTTLEADEIE 325
Query: 336 ITDTGLAALTSLTGLTHL----DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ GL L L L L +LFGA G + K L L + + D GV++
Sbjct: 326 LDAEGLKYLVGLKKLNFLSVNNNLFGAE----GCKVVSEMKQLEELCMNDNNIGDNGVQY 381
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELI--SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+ +L SLT L L N N+ + ++L+ L L +L++ ++IT + + +K L
Sbjct: 382 LCELKSLTSLCLWNN-NIGIEGVKLLCSGNLNNLTTLDIRGNQITKSDSHLFENMKQLTE 440
Query: 450 LTLE 453
L +E
Sbjct: 441 LLIE 444
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 167/348 (47%), Gaps = 11/348 (3%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
D + T N+ L +L+SL I + + K + L L L IS + + G
Sbjct: 71 DNTKITEFTKWAANIAQLEQLKSLEISSDHKVGYDGAKVIGQLKQLTKLDISFNTIGAEG 130
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-----RCQLSDDGCEKFSRL 251
++ +Q+LT LN+ G +T+ + +S L +L YLN+ R D G E L
Sbjct: 131 AKFIGEMQQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYL 190
Query: 252 TNLE---SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
NL+ SL++ IG++G + + +L L + + + + G+R LS L NL ++++
Sbjct: 191 RNLQKLTSLDIGYNQIGNDGAKFIGEIQSLTELTIRNNNLKAEGVRWLSKLKNLRLLSIN 250
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAY 367
I D + + L L L+L +IT G+ ++ L +THL + I D G +
Sbjct: 251 NNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLPKVTHLHISINVIRD-GTKF 309
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L K L +LE L G+K++ L L L+++ N + +++S + L L
Sbjct: 310 LGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNL-FGAEGCKVVSEMKQLEELC 368
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
++++ I G+++L LK+L SL L + + +K L S +L NL +
Sbjct: 369 MNDNNIGDNGVQYLCELKSLTSLCLWNNNIGIEGVKLLCSGNLNNLTT 416
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 149/333 (44%), Gaps = 37/333 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI----SDGGLE---HLRGLSNLT 109
L +++ G+ +T G+ + +NL L+ F D GLE +LR L LT
Sbjct: 138 QQLTYLNIYGNSLTSEGIRFISQLTNLTYLNVRFNEDFRFGGHDKGLEGAQYLRNLQKLT 197
Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
SL N I G K + +L +L + L++ ++W
Sbjct: 198 SLDIGYN-QIGNDGAKFIGEIQSLTELTIRNNN--------------LKAEGVRW----- 237
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LG 228
LS L NL+ L I+ + + D G+ ++ L++LT L+L +TA ++ +S L
Sbjct: 238 ------LSKLKNLRLLSINNNHIKDEGVVHICKLKQLTHLDLWNTEITAEGIELVSKQLP 291
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+ +L+++ + DG + + L +L D + EGL L GL L L +++
Sbjct: 292 KVTHLHIS-INVIRDGTKFLGEMKQLTTLEADEIELDAEGLKYLVGLKKLNFLSVNNNLF 350
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-- 346
G+ G + +S + LE + ++ I D ++ L L SL SL L I G+ L S
Sbjct: 351 GAEGCKVVSEMKQLEELCMNDNNIGDNGVQYLCELKSLTSLCLWNNNIGIEGVKLLCSGN 410
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L LT LD+ G +IT S + N K L L I
Sbjct: 411 LNNLTTLDIRGNQITKSDSHLFENMKQLTELLI 443
>gi|290984372|ref|XP_002674901.1| predicted protein [Naegleria gruberi]
gi|284088494|gb|EFC42157.1| predicted protein [Naegleria gruberi]
Length = 599
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 178/419 (42%), Gaps = 68/419 (16%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+++ + + G H+ L LD N + I + G+E + + LT L
Sbjct: 167 SKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNM-IGNEGIELISRMEQLTDLDV 225
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL-----------------------ERCTRI-HGGLV 149
NN I ++G+K+ + +L L++ C I G
Sbjct: 226 MDNN-IRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKGFS 284
Query: 150 NLKGLMKLESLNI-----KWCNCITDSD----------------MKPLSGLTNLKSLQIS 188
+L L+ LESL I K + I + + P+S L+NL L I
Sbjct: 285 SLSTLLNLESLVILGLDGKSTDFIREMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR 344
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA---------------------CLDSLSAL 227
+ D + + +KLT LN+ C + ++S++ L
Sbjct: 345 GRNIADGDLECIGQFKKLTTLNVPSCNINQGFKSICGLKNLTFLDLSYNKIESVESITNL 404
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
SL L++N ++ +G + S+L NL +L + I DEG+ L+ + L L +++ Q
Sbjct: 405 KSLTQLDINGNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVAENQ 464
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+ G + +S L S++L+ I + L+ L++L L + +I D G ++++
Sbjct: 465 ISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTGLFVYGNRIRDEGAKYISTM 524
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT LD+ ITD GA + N L +L I + D G K I + LT+L++ N
Sbjct: 525 QQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEGAKSICGMKQLTILDIDYN 583
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 35/329 (10%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G++ K D I + + L ++ GS++ G + SNL L I+DG LE +
Sbjct: 299 GLDGKSTDFI-REMNQLTRLEFYGSNLEPKGFDPISHLSNLTFLTIR-GRNIADGDLECI 356
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESL 160
LT+L+ N QG K+ GL NL LDL +I + NLK L +L+ +
Sbjct: 357 GQFKKLTTLNVPSCN--INQGFKSICGLKNLTFLDLSY-NKIESVESITNLKSLTQLD-I 412
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N N I K +S L NL +LQI + + D GI YL +Q LT L +
Sbjct: 413 N---GNRIGHEGAKSISQLDNLTNLQIGHNLIQDEGIKYLSTMQCLTTLGVA-------- 461
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
Q+S +G + S+ L SL+L + I EG L+ L NL
Sbjct: 462 ----------------ENQISIEGAKFISKSHQLTSLDLTNNVIETEGAKILSELNNLTG 505
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L + ++ G +++S + L +++++ I+D + ++ L L +L + + +I D G
Sbjct: 506 LFVYGNRIRDEGAKYISTMQQLTILDIAYNEITDEGAKAISNLDQLSTLYIYSNEICDEG 565
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLR 369
++ + LT LD+ +++ + LR
Sbjct: 566 AKSICGMKQLTILDIDYNVLSEEVSNQLR 594
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 3/273 (1%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+IS ++ + ++ +++LT L++ + ++S L L LN+ + ++ +G
Sbjct: 103 LEISYCRLEAEDVNFIGEMKQLTELDISLNNINCKGAITISQLSKLTKLNVYQTKMGVEG 162
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
++ S+L L SL + + EG ++ + L L+++ +G+ G+ +S + L
Sbjct: 163 AKELSKLKELTSLEIGDNHLKSEGAAHIAQMRKLTFLDINTNMIGNEGIELISRMEQLTD 222
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+++ I ++ L + L +LN+ I D G L + L +L I G
Sbjct: 223 LDVMDNNIRSEGVKSLCKMKHLTNLNIGNNPIEDEGAILLGEMKQLKNLITACNNIGMKG 282
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
+ L NL SL I GL I++++ LT L NL K + IS L+ L
Sbjct: 283 FSSLSTLLNLESLVIL--GLDGKSTDFIREMNQLTRLEF-YGSNLEPKGFDPISHLSNLT 339
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
L + I L + K L +L + SC +
Sbjct: 340 FLTIRGRNIADGDLECIGQFKKLTTLNVPSCNI 372
>gi|344169683|emb|CCA82044.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[blood disease bacterium R229]
Length = 590
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 185/426 (43%), Gaps = 32/426 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ T L SL S + + +G+ L L L+L P+ +L+ +L LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV 294
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS----- 290
+L D G + T L SLN+ IG EG L +L L++ +VG
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 291 -------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLVSLS 533
Query: 452 LESCKV 457
+ C++
Sbjct: 534 VVDCRI 539
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 159/376 (42%), Gaps = 27/376 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTPIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L SLN+ N I K L+ T+L SL I +KV G L LT L +
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ A +L+ L L+++ L G F L SL + + IGDEG L
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLA 428
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +LN+
Sbjct: 429 RNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSR 488
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G L T L L + I + GA L K L SL + + D G +
Sbjct: 489 NQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLVSLSVVDCRIGDEGAHALA 548
Query: 394 DLSSLTLLNLSQNCNL 409
++L LL++S N ++
Sbjct: 549 ANTTLALLDVSLNRHI 564
>gi|18568221|gb|AAL75965.1|AF467461_1 PpaA [Danio rerio]
Length = 386
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 166/303 (54%), Gaps = 26/303 (8%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
+ G+ N++SL +S C +TD+G+ A+++ + L +LNL C +T + L ++ L +L
Sbjct: 81 IQGMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNL 140
Query: 231 FYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTGLC--------NLK 279
L+L C +++ G + L NL+SLNL SC + D G+ +L G+ L+
Sbjct: 141 ELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLE 200
Query: 280 CLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQ 335
L L D Q + L+H+S GL L+ +NLSF G ISD + L+ ++ L +LNL +
Sbjct: 201 HLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDN 260
Query: 336 ITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KH 391
I+DTG+ L+ L LD+ F ++ D AY+ + L+SL +C ++D G+ +
Sbjct: 261 ISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRM 320
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRS 449
++ + L LN+ Q +TDK LELI+ LT L +++ ++IT GL + L L+
Sbjct: 321 VRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKV 380
Query: 450 LTL 452
L
Sbjct: 381 FNL 383
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 151/312 (48%), Gaps = 56/312 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L
Sbjct: 63 RGIKKVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQDIPSLRI 116
Query: 160 LNIKWCNCITDSDMKPLS---------------------------GLTNLKSLQI-SCSK 191
LN+ C ITDS + ++ GL NLKSL + SC
Sbjct: 117 LNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRH 176
Query: 192 VTDSGIAYLKGLQK------LTL--LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRC-QL 240
V+D GI +L G+ + LTL L L+ C +T L +S L L LNL+ C +
Sbjct: 177 VSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGI 236
Query: 241 SDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 297
SD G S +T L +LNL SC I D G+++L+ G L L++S +VG L +++
Sbjct: 237 SDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIA 296
Query: 298 -GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHL 353
GL L+S++L ISD + R + + LK+LN+ +ITD GL + LT LT +
Sbjct: 297 QGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGI 356
Query: 354 DLFG-ARITDSG 364
DL+G +IT G
Sbjct: 357 DLYGCTKITKRG 368
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 43/283 (15%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA +L +DL G S++T++GL+ + NL+SL+ C +SD G+ H
Sbjct: 125 ITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGH 184
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLES 159
L G++ A G + L L L+ C ++ L ++ KGL KL+
Sbjct: 185 LAGMTR-----------------SAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKG 227
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGCPVT 217
LN+ +C I+D+ M LS +T L +L + SC ++D+GI +L G +L L++ C
Sbjct: 228 LNLSFCGGISDAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKV 287
Query: 218 AACLDSLSALGSLFY----LNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEG--- 268
SL+ + Y L+L C +SDDG + R + L++LN+ C I D+G
Sbjct: 288 GD--QSLAYIAQGLYQLKSLSLCSCHISDDGINRMVRQMHELKTLNIGQCVRITDKGLEL 345
Query: 269 ----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L LTG+ C T++ GL ++ L L+ NL
Sbjct: 346 IADHLTQLTGIDLYGC-----TKITKRGLERITQLPCLKVFNL 383
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 32/251 (12%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + ++ L L C +++D+ +G R L N
Sbjct: 84 MPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLG----RIAQYLKN 139
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT--------GL 350
LE ++L + I++ L +A GL +LKSLNL + R ++D G+ L +T L
Sbjct: 140 LELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTL 199
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
HL L ++TD ++ + L+ L + GG++DAG+ H+ ++ L LNL
Sbjct: 200 EHLTLQDCQKLTDLSLKHISKGLNKLKGLNLSFCGGISDAGMIHLSHMTQLWTLNLRSCD 259
Query: 408 NLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKR 464
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I R
Sbjct: 260 NISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINR 319
Query: 465 L--QSRDLPNL 473
+ Q +L L
Sbjct: 320 MVRQMHELKTL 330
>gi|290981112|ref|XP_002673275.1| predicted protein [Naegleria gruberi]
gi|284086857|gb|EFC40531.1| predicted protein [Naegleria gruberi]
Length = 461
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 120/464 (25%), Positives = 200/464 (43%), Gaps = 60/464 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L +D++ SD+ + + L NL+ L+ I D GLE L L LT L+ R NN
Sbjct: 4 LKRLDIASSDIGNEQVKILSQFKNLELLNLGDN-HIKDEGLELLSDLKGLTLLNIR-NNR 61
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-------------HGGLVNLKG------------ 153
I + +++ + NL L++++ RI H +N+ G
Sbjct: 62 I--ESVESICKMKNLTHLNIKK-NRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEK 118
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+SLNI N + + ++ + L L I + + G Y+ L+KLT L + G
Sbjct: 119 LQYLKSLNINRNN-LGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCING 177
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + + + L +L++ Q+ + E S +TNL LNL I GLV++T
Sbjct: 178 NRIGDVGAEYIIKMKQLTFLDMQYNQIENVMVES-SEITNLTYLNLGYNKITTNGLVSIT 236
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L LK L L L L + +L+ +++S + + + ++ L SL +
Sbjct: 237 KLDQLKSLYLHYNYYLDPNL--LERMKHLKKLDIS-KNFTQNEFKSICEMTHLTSLIVPR 293
Query: 334 RQITDTGLAALTSLTGLTHLDL-------FGAR-----------------ITDSGAAYLR 369
I TG+ ++T L LT LD+ GA I GA ++
Sbjct: 294 NSINKTGIQSITELKHLTELDIENNEIGTTGAEKISEMKHLLILKIDYNNICSEGARFIS 353
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
NL +L I + G K+I +S LT L + + + D+ ++ IS LT L L+++
Sbjct: 354 QLPNLTALSIGANNIRTVGAKYIGQMSQLTELRIYSDYEIGDEGVKAISRLTRLTKLHIN 413
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
+T G + + LKNL L N ++ + R LP L
Sbjct: 414 GIGMTDEGAKSILALKNLTWLCAYWPNPYGNQVRNML-RKLPAL 456
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 48/249 (19%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS---GLT------- 300
+ +L+ L++ S IG+E + L+ NL+ L L D + GL LS GLT
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 301 ------------NLESINLSFTGISDGSLRKLA--------------GLSS--------- 325
NL +N+ I D + ++A G++S
Sbjct: 61 RIESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSCKPISEKLQ 120
Query: 326 -LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
LKSLN++ + G + + LT L + I GA Y+ + L +L I G +
Sbjct: 121 YLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCINGNRI 180
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
D G ++I + LT L++ N + + S +T L LN+ ++IT+ GL + L
Sbjct: 181 GDVGAEYIIKMKQLTFLDMQYNQ--IENVMVESSEITNLTYLNLGYNKITTNGLVSITKL 238
Query: 445 KNLRSLTLE 453
L+SL L
Sbjct: 239 DQLKSLYLH 247
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 7/183 (3%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+LK L+++ + +G+ ++ LS NLE +NL I D L L+ L L LN+ +I
Sbjct: 3 HLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNNRI 62
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKD- 394
+ ++ + LTHL++ RI D G + N +L L + G G+T K I +
Sbjct: 63 --ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVSGCGITSC--KPISEK 118
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L L LN+++N NL K + ++ + L L++ N+ I + G ++ L+ L +L +
Sbjct: 119 LQYLKSLNINRN-NLGSKGAQNVAEMKQLTCLSIGNNHIHAKGALYISRLEKLTALCING 177
Query: 455 CKV 457
++
Sbjct: 178 NRI 180
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ +L+ ++++ + I + ++ L+ +L+ LNL I D GL L+ L GLT L++
Sbjct: 1 MKHLKRLDIASSDIGNEQVKILSQFKNLELLNLGDNHIKDEGLELLSDLKGLTLLNIRNN 60
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELI 417
RI + KNL L I + D G++ I ++L+ L LN+S C +T +
Sbjct: 61 RI--ESVESICKMKNLTHLNIKKNRIGDLGIEEIAENLNHLIYLNVS-GCGITS-CKPIS 116
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L L SLN++ + + S G +++ +K L L++ + + A
Sbjct: 117 EKLQYLKSLNINRNNLGSKGAQNVAEMKQLTCLSIGNNHIHA 158
>gi|195585785|ref|XP_002082659.1| GD25110 [Drosophila simulans]
gi|194194668|gb|EDX08244.1| GD25110 [Drosophila simulans]
Length = 522
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 147/285 (51%), Gaps = 29/285 (10%)
Query: 35 DLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCI 92
D+ LG + D + IA +L +++L G ++T++GL+ + L+ L+ C
Sbjct: 249 DMNLGHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSCW 308
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-- 150
ISD G+ HL G S T+ G + L L L+ C R+ +
Sbjct: 309 HISDQGIGHLAGFSRETA-----------------EGNLQLEYLGLQDCQRLSDEALGHI 351
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTL 208
+GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G +
Sbjct: 352 AQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINS 411
Query: 209 LNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-I 264
L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+ C I
Sbjct: 412 LDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALHELENLNIGQCSRI 471
Query: 265 GDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 472 TDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 516
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 169/365 (46%), Gaps = 75/365 (20%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
RG+ + LS RR+ G+ A L NL G + +N+
Sbjct: 212 RGIKKVQILSLRRSLKDLVLGVPALTSL-------------------NLSGCFNVADMNL 252
Query: 163 KWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAA 219
ITD+ + ++ L NL++L++ C +T++G+ + GL+KL LNL C
Sbjct: 253 GHAFSITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHLNLRSC----- 307
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEK---FSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+SD G FSR T +L L+ G+ D
Sbjct: 308 ------------------WHISDQGIGHLAGFSRETAEGNLQLEYLGLQD---------- 339
Query: 277 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA- 333
C LSD +G H++ GLT+L+SINLSF ++D L+ LA + L+ LNL +
Sbjct: 340 ---CQRLSDEALG-----HIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC 391
Query: 334 RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVK 390
I+D G+A LT +G+ LD+ F +I+D ++ + LRSL + +TD G+
Sbjct: 392 DNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGML 451
Query: 391 HI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
I K L L LN+ Q +TDK L+ L LT L ++++ ++++S G+ + L L
Sbjct: 452 KIAKALHELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKL 511
Query: 448 RSLTL 452
+ L L
Sbjct: 512 QKLNL 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 32/231 (13%)
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SINLSFT 310
L SLNL C N+ + ++DT +G +HL L LE N++ T
Sbjct: 236 LTSLNLSGC-------FNVADMNLGHAFSITDTSLGRIA-QHLRNLETLELGGCCNITNT 287
Query: 311 GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDLFG----ARI 360
G+ L GL LK LNL + I+D G+ L + G L+ G R+
Sbjct: 288 GL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRL 343
Query: 361 TDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-L 416
+D ++ + +L+S L C +TD+G+KH+ + L LNL N++D + L
Sbjct: 344 SDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYL 402
Query: 417 ISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 403 TEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 453
>gi|407849405|gb|EKG04153.1| hypothetical protein TCSYLVIO_004793 [Trypanosoma cruzi]
Length = 835
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 189/402 (47%), Gaps = 41/402 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ + +L + L+ C MKL+ +N L
Sbjct: 250 MGITEEGLAFISSCNSLRHIQLDNC-------------MKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L++
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDIT 342
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++D+GC + ++ L L SC + D + L +L+ L+LS T V S+ L+
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSDVRWI--CALTSLRFLDLSKTHVRSADLQL 400
Query: 296 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ LE +++ S +G+ D S + GL SL L+L I D G +L T LT L
Sbjct: 401 LTVCQRLEELHVASCSGVKDASF--VEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLS 458
Query: 355 LFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L R +TD ++ K+L +L + G + DA + + + L +L+L LTD
Sbjct: 459 LQDCRFLTD--IQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD-- 514
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ + L L SL++S + +T G+ + +L + L C
Sbjct: 515 VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGC 556
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 114/463 (24%), Positives = 194/463 (41%), Gaps = 91/463 (19%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHL 77
+T+ A +C +Q L L V+D +W+ + +SL +DLS + V + L L
Sbjct: 346 VTDEGCAALANCGQIQKLKLASCRCVSDVRWICAL----TSLRFLDLSKTHVRSADLQLL 401
Query: 78 KDCSNLQSLDFNFC----------------------IQISDGGLEHLRGLSNLTSLSFRR 115
C L+ L C I D G + LR + LT LS +
Sbjct: 402 TVCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTQSLRKCTALTFLSLQD 461
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T ++ L +L+ L+LE + ++ L KLE L+++ +C+ +D++
Sbjct: 462 CRFLT--DIQFVEPLKDLLNLNLEGTEVVDANIIPLMHCTKLEVLSLR--HCLFLTDVRC 517
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L LKSL +S + VTD G++ + L ++L GC + + L L +L ++
Sbjct: 518 LRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSGCCLITH-FEFLRPLTALRHVIA 576
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
+R + LD G+G G V + + K ++GS G+
Sbjct: 577 DRMNV------------------LDVTGLGGSGSVERVSIADCK-------RLGSMGMLE 611
Query: 296 LSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHL 353
L +L +L + I+D + L SL+ LNL + IT+ L+A+ L LT L
Sbjct: 612 APRLLDL---SLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTEL 666
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+ +IT+ A++ L L++ I D++SL L+
Sbjct: 667 LVRNMKITNKSVAFVARCATLEKLQM-------VECVEITDVNSLKYLH----------- 708
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
LV L++S + +TS G+ L NL+ L L C+
Sbjct: 709 --------RLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGCR 743
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
SG+ +L L+NL ++ L T +S+ + L+ SL+ + +++ + + L L+SL L
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLRS-LECLSSLQRL 242
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L L IT+ G A++ + +LR +++ NC +
Sbjct: 243 TELSLLNMGITEEGLAFISSCNSLRHIQL-------------------------DNC-MK 276
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
+ + + L GL +L+VS +R++ G+R L L+NL L L S
Sbjct: 277 LQGINCLGSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVS 320
>gi|322790910|gb|EFZ15576.1| hypothetical protein SINV_11426 [Solenopsis invicta]
Length = 526
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 143/271 (52%), Gaps = 29/271 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 273 VTDTSLSRIAQYLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDIGIAH 332
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ G L+S
Sbjct: 333 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGFTTLKS 375
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL +G ++T L++ C
Sbjct: 376 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 435
Query: 218 A--ACLDSLSALGSLFYLNLNRCQLSDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVNLT 273
A + L +L L+L+ CQ+SD+G C+ L +LE+LN+ C + D GL +
Sbjct: 436 GDQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVA 495
Query: 274 -GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
+ NLKC++L T++ +SGL + L L
Sbjct: 496 ESMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 161/330 (48%), Gaps = 65/330 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIA--- 198
LKG+ LE+LN+ C ITD G+TN L L +S C +VTD+ ++
Sbjct: 229 LKGVPNLEALNLSGCYNITD------IGITNAFCQEYPSLTELNLSLCKQVTDTSLSRIA 282
Query: 199 -YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLES 256
YLK L+ L L GC C +++ G + L L+
Sbjct: 283 QYLKNLEH---LELGGC-----------------------CNITNTGLLLIAWGLKKLKR 316
Query: 257 LNLDSCG-IGDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESI 305
L+L SC + D G+ +L GL L+ L L D Q + LRH+S G T L+SI
Sbjct: 317 LDLRSCWHVSDIGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGFTTLKSI 376
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARIT 361
NLSF I+D ++ LA +SSL+ LNL + I+D G+A L + +T LD+ F +I
Sbjct: 377 NLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIG 436
Query: 362 DSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS- 418
D ++ + NL+SL + ++D G+ K K L L LN+ Q LTD+ L ++
Sbjct: 437 DQALVHISQGLFNLKSLSLSACQISDEGICKIAKTLHDLETLNIGQCSRLTDRGLHTVAE 496
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNL 447
+ L +++ ++IT++GL + L L
Sbjct: 497 SMKNLKCIDLYGCTKITTSGLERIMKLPQL 526
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 124/245 (50%), Gaps = 38/245 (15%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ NLE+LNL C I D G+ N LT L C +++DT + S ++L L +
Sbjct: 232 VPNLEALNLSGCYNITDIGITNAFCQEYPSLTELNLSLCKQVTDTSL-SRIAQYLKNLEH 290
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LK L+L + ++D G+A L L
Sbjct: 291 LELGGCCNITNTGL----LLIAWGLKKLKRLDLRSCWHVSDIGIAHLAGLNRETADGNLA 346
Query: 350 LTHLDLFG-ARITDSGAAYLR-NFKNLRSLE----ICGGGLTDAGVKHIKDLSSLTLLNL 403
L HL L R++D ++ F L+S+ +C +TD+GVKH+ +SSL LNL
Sbjct: 347 LEHLSLQDCQRLSDEALRHVSLGFTTLKSINLSFCVC---ITDSGVKHLARMSSLRELNL 403
Query: 404 SQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTAN 460
N++D + L G + + SL+VS +I L H+ + L NL+SL+L +C+++
Sbjct: 404 RSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDE 463
Query: 461 DIKRL 465
I ++
Sbjct: 464 GICKI 468
>gi|290980538|ref|XP_002672989.1| predicted protein [Naegleria gruberi]
gi|284086569|gb|EFC40245.1| predicted protein [Naegleria gruberi]
Length = 315
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 26/228 (11%)
Query: 160 LNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + + DS + +S + L SL I +++ D G Y+ +++LT LN+ G
Sbjct: 107 VNVKFSSWLLDSFERAEFISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGG---- 162
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
NR + G + S + L SL+ + IGDEG ++ +
Sbjct: 163 ------------------NRIGIK--GAKLISEMKQLTSLHTYNNRIGDEGAKYISEMKQ 202
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L++ Q+G G + +SG+ L S+++ I D + ++G+ L SLN+ +I
Sbjct: 203 LTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKLISGMKQLTSLNIGVNEIG 262
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
D G ++ + LT L ++ RI D GA Y+ K L SL I G L
Sbjct: 263 DEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNIGGNELV 310
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L + + ++G G ++++ + L S+N+ I + ++ + L SL+
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+I D G ++ + LT LD+ G +I D GA + K L SL I + D G K
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I + LT LN+ N + D+ +LISG+ L SL + N+RI G +++ +K L SL
Sbjct: 245 ISGMKQLTSLNIGVN-EIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLN 303
Query: 452 L 452
+
Sbjct: 304 I 304
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 92/183 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+ ++ D G + + + L SLN+ IG +G ++ + L L
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ ++G G +++S + L S+++ I D + ++G+ L SL++ +I D G
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNNRIGDEGAKL 244
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT L++ I D GA + K L SL+I + D G K+I ++ LT LN+
Sbjct: 245 ISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRIGDEGAKYISEMKQLTSLNI 304
Query: 404 SQN 406
N
Sbjct: 305 GGN 307
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+S + L S+N+ I D + + + L SLN+ +I G ++ + LT L
Sbjct: 125 ISEMKQLTSLNIYNNRIGDVGAKYINEMKQLTSLNIGGNRIGIKGAKLISEMKQLTSLHT 184
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ RI D GA Y+ K L SL+I G + D G K I + LT L++ N + D+ +
Sbjct: 185 YNNRIGDEGAKYISEMKQLTSLDIGGNQIGDEGAKLISGMKRLTSLHIYNN-RIGDEGAK 243
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LISG+ L SLN+ + I G + + +K L SL + + ++
Sbjct: 244 LISGMKQLTSLNIGVNEIGDEGAKLISGMKRLTSLQIYNNRI 285
>gi|72385469|ref|XP_846402.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366571|emb|CAB95333.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 184/404 (45%), Gaps = 14/404 (3%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L ++L+ +++ DS + + C L L + C ++D + L+ L L+
Sbjct: 276 SRLTNLKCLELNSTNIDDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNL 333
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N +G+ L+ L LDL L +L LE LNI +C I +D+
Sbjct: 334 --SNCHITKGIGTLGMLLRLRILDLSGVPVEDNCLKDLCDCGSLERLNISYC--IQLTDI 389
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L +L +L+++ ++ LDS+ G L
Sbjct: 390 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPRLRILHMKDVHLSEPSLDSVGTGGLLVK 448
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
++L+ C D S + LE LN+ C G+ L L L+ L + + + S
Sbjct: 449 VSLDNCAGFGD-MTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNVKEVHISSLD 507
Query: 293 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ +L + L SFTG+S+ + LA + +L+ L+L D G+ L +L L
Sbjct: 508 FIGIGASKSLLQLTLESFTGLSN--VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLK 565
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LDL G + L + + SL + V HI L +L LNLS NC +
Sbjct: 566 MLDLSGTNTDNESLRSLCLSQTVVSLNL-SHCWKMTNVSHISSLEALNELNLS-NCIRIN 623
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
E I L L +SN+ IT + H KNL +L L C
Sbjct: 624 AGWEAIEKLQQLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 667
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 182/451 (40%), Gaps = 66/451 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD----------------------GGLEH 101
LS + + D + H+ +C +L +L+ FC I+D G+E
Sbjct: 854 LSNTRINDENIQHVSECKSLNTLNLAFCKDITDVTALSTITMLEELNLDCCHNIRKGIET 913
Query: 102 LRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L L + LS + AQ +LVKL+LER G +++K L + +
Sbjct: 914 LGKLPKVRILSMKECYMGDSDAQQCSILGNSKSLVKLNLERSM----GFISVKALSNIAT 969
Query: 160 LNIKWCNCITDS-----DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
L + DS D+ S L L+ L + + + D + + L LNL C
Sbjct: 970 LE----ELVLDSVCGIYDVLSFSCLPRLRVLNLKYTDINDDVTKNISESKSLQSLNLSHC 1025
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV---- 270
+ LS+L +L LN+N C G E +L L L I + +
Sbjct: 1026 KWVTD-ISVLSSLSTLEELNVNFCNGIRKGWESLGKLPLLRVAILSDTNITAKDIACLSS 1084
Query: 271 --NLTGLCNLKCLELSDTQV-----------------GSSGLRHLSGLTNLESINLSFTG 311
L L +C +LSD V G GL L L+ L ++L
Sbjct: 1085 CKKLVKLQFFRCEKLSDVTVVYEIQSLEELIVRKYSDGLKGLNALGTLSRLRFLHLRNAR 1144
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
SD S+ + SL LN++ R+ +TD L+++T L L L T GA L
Sbjct: 1145 GSDISVESIGTSKSLVRLNIETREELTDA--TPLSNITSLEELSLRDCGDTLEGAWTLGK 1202
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
LRSL++ ++D + I +T LNL N LTD + IS LT L LN+S
Sbjct: 1203 LPRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTD--ISSISNLTALEELNLSG 1260
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
++G L L LR L LES VT D
Sbjct: 1261 CHRITSGWEALSELPRLRVLNLESTSVTTRD 1291
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 169/370 (45%), Gaps = 14/370 (3%)
Query: 100 EHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
E LR L + T +S ++ + + L L +L+L C RI+ G ++ L +L
Sbjct: 577 ESLRSLCLSQTVVSLNLSHCWKMTNVSHISSLEALNELNLSNCIRINAGWEAIEKLQQLH 636
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+ I ITD D+ S NL +L +S C+K+ D + L + L LNL+ C
Sbjct: 637 -VAILSNTHITDRDISHFSKCKNLVTLDLSFCNKLLD--VTTLSNITTLEELNLDSCSNI 693
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLC 276
L L L L LN+ QL D + L+L++C G G G+ L+ L
Sbjct: 694 RKGLSVLGELPRLCVLNIKGVQLEDSVIGSLGNGNSFVRLSLENCKGFG--GVTPLSNLV 751
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DAR 334
L+ L L +SG+ L L L ++L T + D SL + SS L SLNL +
Sbjct: 752 TLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSHCK 811
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+IT ++A+ SLT L L++ SG LR + + D ++H+ +
Sbjct: 812 KIT--SISAIASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIQHVSE 869
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
SL LNL+ ++TD T +S +T L LN+ G+ L L +R L+++
Sbjct: 870 CKSLNTLNLAFCKDITDVT--ALSTITMLEELNLDCCHNIRKGIETLGKLPKVRILSMKE 927
Query: 455 CKVTANDIKR 464
C + +D ++
Sbjct: 928 CYMGDSDAQQ 937
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 173/419 (41%), Gaps = 56/419 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 244 IDNNDARHLFSVGTLEELAITDTMQLT--NIREISRLTNLKCLELNSTNIDDSCVEEISA 301
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN +TD+ P+S L L+ L +S +T GI L L +L +L+L G
Sbjct: 302 CVKLSKLSVSECNNVTDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 358
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
PV CL L GSL LN++ C QL+D S T +E LNL+ C G+ +
Sbjct: 359 VPVEDNCLKDLCDCGSLERLNISYCIQLTD--INPLSNATAIEELNLNGCRRITRGIGVV 416
Query: 273 TGLCNLKCLELSDTQ--------VGSSGL---------------RHLSGLTNLESINLSF 309
L L+ L + D VG+ GL LS + LE +N+
Sbjct: 417 WALPRLRILHMKDVHLSEPSLDSVGTGGLLVKVSLDNCAGFGDMTLLSSIVTLEELNIQK 476
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITD--------------------TGLA---ALTS 346
+ L L L+ LN+ I+ TGL+ AL +
Sbjct: 477 CADIISGVGCLGTLPYLRVLNVKEVHISSLDFIGIGASKSLLQLTLESFTGLSNVEALAN 536
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L L L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 537 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHC 596
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 597 WKMTN--VSHISSLEALNELNLSNCIRINAGWEAIEKLQQLHVAILSNTHITDRDISHF 653
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 192/433 (44%), Gaps = 49/433 (11%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
+Y +ND I S+ SL S++LS VTD + L S L+ L+ NFC I G
Sbjct: 999 KYTDINDDVTKNI-SESKSLQSLNLSHCKWVTDISV--LSSLSTLEELNVNFCNGIRKGW 1055
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
E L L L ++ + ITA+ + + LVKL RC ++
Sbjct: 1056 -ESLGKLP-LLRVAILSDTNITAKDIACLSSCKKLVKLQFFRCEKL-------------- 1099
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPV 216
SD+ + + +L+ L + K +D G+ L L +L L+L
Sbjct: 1100 ------------SDVTVVYEIQSLEELIVR--KYSDGLKGLNALGTLSRLRFLHLRNARG 1145
Query: 217 TAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ ++S+ SL LN+ R +L+D S +T+LE L+L CG EG L L
Sbjct: 1146 SDISVESIGTSKSLVRLNIETREELTD--ATPLSNITSLEELSLRDCGDTLEGAWTLGKL 1203
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDAR 334
L+ L+L + + + L + + S+NL + ++D S ++ L++L+ LNL
Sbjct: 1204 PRLRSLDLGLSDISDNTLDEICLSRFITSLNLRYNFKLTDIS--SISNLTALEELNLSGC 1261
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAG-VKHI 392
+G AL+ L L L+L +T G Y+ K+L +L + +TDA + +I
Sbjct: 1262 HRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISRCKSLVTLNLESCDMTDASCLANI 1321
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K L L + C+ + + L L LN+ +S IT LR ++P + L L
Sbjct: 1322 KTLEELHI----GECDELTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNL 1377
Query: 453 ESCKVTANDIKRL 465
CK NDI L
Sbjct: 1378 SYCK-NLNDITPL 1389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 115/279 (41%), Gaps = 63/279 (22%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+SLD ISD L+ + +TSL+ R N +T + + + L L +L+L C
Sbjct: 1206 LRSLDLGLS-DISDNTLDEICLSRFITSLNLRYNFKLT--DISSISNLTALEELNLSGCH 1262
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
RI G L L +L LN++ S S T G Y+
Sbjct: 1263 RITSGWEALSELPRLRVLNLE------------------------STSVTTRDGGYYISR 1298
Query: 203 LQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
+ L LNLE C +T A+CL + + LE L++
Sbjct: 1299 CKSLVTLNLESCDMTDASCL---------------------------ANIKTLEELHIGE 1331
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKL 320
C +G L L L+ L L D+ + LR + +E +NLS+ ++D + L
Sbjct: 1332 CDELTQGFSALFTLPRLRILNLMDSLITDEDLREIQPPHTIEELNLSYCKNLND--ITPL 1389
Query: 321 AGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDL 355
+ S+K L+L D R++ + G +L L L+ +DL
Sbjct: 1390 GRIKSIKKLHLSQSHDVRRLRE-GFRSLLELPCLSWVDL 1427
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 39/286 (13%)
Query: 173 MKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ L G K L I+ SK + G++ LK L++L + G V L++L L
Sbjct: 177 LSSLCGRIQAKKLTIALSKDENFDLQGVSKLKQLEELRIEYPHGKLVNMISLNNLDMLKR 236
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L L + ++ + LE L + D+ + + + ++ L NLKCLEL+ T +
Sbjct: 237 L---RLRSNNIDNNDARHLFSVGTLEELAITDTMQLTN--IREISRLTNLKCLELNSTNI 291
Query: 289 GSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
S + +S L +++S ++D + ++ L++L+ LNL IT G+ L L
Sbjct: 292 DDSCVEEISACVKLSKLSVSECNNVTDAT--PISQLAALEELNLSNCHITK-GIGTLGML 348
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L LDL G + D+ C L D G SL LN+S
Sbjct: 349 LRLRILDLSGVPVEDN----------------CLKDLCDCG--------SLERLNISYCI 384
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
LTD + +S T + LN++ R + G+ + L LR L ++
Sbjct: 385 QLTD--INPLSNATAIEELNLNGCRRITRGIGVVWALPRLRILHMK 428
>gi|290975915|ref|XP_002670687.1| predicted protein [Naegleria gruberi]
gi|284084248|gb|EFC37943.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 25/250 (10%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L +L IS + + + G ++ L++LTLLN+ + + L L YL++++ +
Sbjct: 130 LTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYLDISKNDIR 189
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G S L L SL + S I +EG +L L NL LE + G+ G +H+S +
Sbjct: 190 SNGALYISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETVRNEFGAEGAKHISEMKQ 249
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD----------------------- 338
L ++N++ I D + ++ + L LN+ + +ITD
Sbjct: 250 LINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFENFGQLNQLTELYIEDNSI 309
Query: 339 --TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
++ L L LD+ G + GA Y+ L LEI L + G KHI +
Sbjct: 310 QTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTELEIHTNSLGNEGAKHISTMK 369
Query: 397 SLTLLNLSQN 406
L L L N
Sbjct: 370 ELEYLYLCDN 379
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 40/305 (13%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL-LNLEGCPVTAACL 221
+W N I L LK L + C +L+ ++ L++ ++G
Sbjct: 75 QWLNVI----------LERLK-LHMKCKNNVKLNGEFLQNIETLSVNFRIKGVVFNCGVF 123
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
D +S SL L ++R + +DG + S L L LN+ S I +EG + L L L
Sbjct: 124 DLMSK--SLTTLYISRNNIENDGAKHISALKQLTLLNISSNNIEEEGAKYIGKLEKLTYL 181
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++S + S+G ++S L L S+ +S + I + G
Sbjct: 182 DISKNDIRSNGALYISELKQLTSLVIS------------------------SNNIDEEGA 217
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
A L LT LT L+ GA ++ K L +L I + D G K+I ++ LT+L
Sbjct: 218 AHLIKLTNLTELETVRNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTIL 277
Query: 402 NLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
N+ N +TD+ E L L L + ++ I + +++ L+NL L + V A
Sbjct: 278 NIGSN-EITDRVNFENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAE 336
Query: 461 DIKRL 465
K +
Sbjct: 337 GAKYI 341
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 121/304 (39%), Gaps = 53/304 (17%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRIHGGLVNLK 152
I + G +H+ L LT L+ NN I +G K L L LD+ + R +G L
Sbjct: 140 IENDGAKHISALKQLTLLNISSNN-IEEEGAKYIGKLEKLTYLDISKNDIRSNGALY--- 195
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+S L L SL IS + + + G A+L L LT L
Sbjct: 196 -----------------------ISELKQLTSLVISSNNIDEEGAAHLIKLTNLTELETV 232
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE-GLVN 271
A +S + L LN+N + D+G + S + L LN+ S I D N
Sbjct: 233 RNEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNIGSNEITDRVNFEN 292
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L L + D + ++ +++S L NL +++S N+
Sbjct: 293 FGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGN-------------------NV 333
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
DA G ++ + LT L++ + + GA ++ K L L +C ++ +H
Sbjct: 334 DAE-----GAKYISQMNQLTELEIHTNSLGNEGAKHISTMKELEYLYLCDNDVSVEVKQH 388
Query: 392 IKDL 395
I+++
Sbjct: 389 IREI 392
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 28/207 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +S +++ + G HL L+NLT L
Sbjct: 197 SELKQLTSLVISSNNIDEE-------------------------GAAHLIKLTNLTELET 231
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-D 172
R N A+G K + + L+ L++ G + + +L LNI N ITD +
Sbjct: 232 VR-NEFGAEGAKHISEMKQLINLNINDNFIGDEGAKYISEMKQLTILNI-GSNEITDRVN 289
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L L L I + + + Y+ LQ L LL++ G V A +S + L
Sbjct: 290 FENFGQLNQLTELYIEDNSIQTNACKYISQLQNLNLLDISGNNVDAEGAKYISQMNQLTE 349
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNL 259
L ++ L ++G + S + LE L L
Sbjct: 350 LEIHTNSLGNEGAKHISTMKELEYLYL 376
>gi|290996013|ref|XP_002680577.1| predicted protein [Naegleria gruberi]
gi|284094198|gb|EFC47833.1| predicted protein [Naegleria gruberi]
Length = 395
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 144/320 (45%), Gaps = 9/320 (2%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L LD +C ++ + G + + L LT+L +N+I ++G K + L+ L ++
Sbjct: 78 LTELDVRYC-RMGEEGSKIISKLGQLTNLDIS-HNSIRSKGFKFICEMKQLIILKVQYNK 135
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
++ L +L L+I N I D K + L L L IS + +++ G+ +L
Sbjct: 136 LEKSSSNQIEDLKQLTKLDIS-GNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKHLSD 194
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
LQ+L LN+ V + + L LN+ L+ + ++ +L+ L
Sbjct: 195 LQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEFGVV 254
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
G+G++G ++ L +L L++S+ Q+ +G LS + +L +++ F I D +R ++
Sbjct: 255 GLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISM 314
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L L LN + + G ++ + LT L + + D G + KNL+ L I
Sbjct: 315 LKKLTDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLRIFSE 374
Query: 383 GLTDAG------VKHIKDLS 396
+ G KHI L
Sbjct: 375 YMDKEGKDALLNTKHITKLK 394
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 144/303 (47%), Gaps = 3/303 (0%)
Query: 153 GLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL+K L L++++C + + K +S L L +L IS + + G ++ +++L +L +
Sbjct: 73 GLLKQLTELDVRYCR-MGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIILKV 131
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ + + + + L L L+++ + D+G + +L L L++ + + G+ +
Sbjct: 132 QYNKLEKSSSNQIEDLKQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNYLSNVGVKH 191
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L+ L L L +S V + + + L +N+ ++ S + + LK L
Sbjct: 192 LSDLQQLIYLNVSYNDVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMIGKMDHLKKLEF 251
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ + G ++ L LT LD+ +I D+GA L ++L L++ + D G++
Sbjct: 252 GVVGLGNDGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRS 311
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I L LT LN ++N ++ + IS + L L V ++ G+ + +KNL+ L
Sbjct: 312 ISMLKKLTDLN-ARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLR 370
Query: 452 LES 454
+ S
Sbjct: 371 IFS 373
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 50/267 (18%)
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++ SK T + I + ++LT+LN+ P+ G
Sbjct: 35 ELKLSKHTFNDIEPIGKFKQLTILNISDNPIMK-------------------------GV 69
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
E L L L++ C +G+EG ++ L L L++S + S G + + + L +
Sbjct: 70 EAIGLLKQLTELDVRYCRMGEEGSKIISKLGQLTNLDISHNSIRSKGFKFICEMKQLIIL 129
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
+ + + S + QI D L LT LD+ G I D GA
Sbjct: 130 KVQYNKLEKSS----------------SNQIED--------LKQLTKLDISGNNIDDEGA 165
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ K L L+I L++ GVKH+ DL L LN+S N ++ ++ + I + L
Sbjct: 166 KSIGQLKQLTKLDISVNYLSNVGVKHLSDLQQLIYLNVSYN-DVDEEVAKDIYNMKKLSK 224
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTL 452
LN+ + + + + +L+ L
Sbjct: 225 LNIGGNDLNIESFSMIGKMDHLKKLEF 251
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 15/242 (6%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
L +D+SG+++ D G + L LD + +S+ G++HL L L L+ N
Sbjct: 148 KQLTKLDISGNNIDDEGAKSIGQLKQLTKLDISVNY-LSNVGVKHLSDLQQLIYLNVSYN 206
Query: 117 N-----AITAQGMKAFAGL-INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
+ A MK + L I L++E + I G + +LK KLE + N
Sbjct: 207 DVDEEVAKDIYNMKKLSKLNIGGNDLNIESFSMI-GKMDHLK---KLEFGVVGLGN---- 258
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ +S L +L L IS +++ D+G L ++ LT L++ + + S+S L L
Sbjct: 259 DGFEFISKLKHLTMLDISENQINDNGAELLSRMEHLTKLDVGFNSIGDRGIRSISMLKKL 318
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LN + ++G + S + L L +D GDEG++ +T + NLK L + +
Sbjct: 319 TDLNARNNEFGNEGAKYISEMMQLTILQVDENKFGDEGIIAITKMKNLKKLRIFSEYMDK 378
Query: 291 SG 292
G
Sbjct: 379 EG 380
>gi|290972775|ref|XP_002669126.1| predicted protein [Naegleria gruberi]
gi|284082669|gb|EFC36382.1| predicted protein [Naegleria gruberi]
Length = 467
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 183/380 (48%), Gaps = 27/380 (7%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES----- 159
L+ L S+ + NN I M++ A + L+ LD+ C R NL+G+ L S
Sbjct: 63 LTQLKSIVLKFNN-INEYEMESIASMNKLISLDI-GCAR-----TNLEGIKILSSKDNFT 115
Query: 160 -LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCP 215
LNI++ M+ +S +T+L+ L IS + ++ YLK L+KLT L +
Sbjct: 116 ELNIEFSFFDQVPYMEYVSKMTDLRKLDISNNPISLNRAKSANYLKSLEKLTDLTVTYLD 175
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG- 274
+ L S+S L L L++ + +G + + L+ L++ IG+EG ++
Sbjct: 176 MDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAIGEEGAKLISNS 235
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L L + D Q+G G +S + L +++L + I L + + LKSL L+
Sbjct: 236 LKQLNTLRIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGLEFICQMDQLKSLMLNFN 295
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I + L + +LT LT + L I + LR++ I L D ++ I +
Sbjct: 296 TIGGSRLP-INALTNLTEISLVLTNIGIEIVKSISLITKLRNVNISDNRLGDECLEIIGN 354
Query: 395 -LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L +LT L++S+N N+T+ + +S L L LN ++R+ ++HL LK L+SL +
Sbjct: 355 SLFNLTELDISEN-NMTENGTKYLSSLKNLTHLNAEDNRLNDESIQHLCSLKKLKSLYIN 413
Query: 454 SCKV-------TANDIKRLQ 466
+ +V AN +K+L+
Sbjct: 414 NNQVGDEGFALIANSMKQLR 433
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/420 (25%), Positives = 189/420 (45%), Gaps = 47/420 (11%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
++ +N+ M+ IAS + L+S+D+ + G+ L N L+ F +
Sbjct: 72 KFNNINEYEMESIASM-NKLISLDIGCARTNLEGIKILSSKDNFTELNIEFSFFDQVPYM 130
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
E++ +++L L NN I+ K+ L K L KL
Sbjct: 131 EYVSKMTDLRKLDIS-NNPISLNRAKSANYL---------------------KSLEKLTD 168
Query: 160 LNIKWCNCITDSDMKPLSGLTNLK---SLQISCSKVTDSGIAYLKGLQKLTLLNL----- 211
L + + D D++ L ++NLK SL I + V G+ + + +L L++
Sbjct: 169 LTVTYL----DMDLEFLKSISNLKFLTSLSIYGNLVGIEGVKIICSMFQLKKLDITLNAI 224
Query: 212 --EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
EG + + L L+ L + Q+ D G E S + L +L+L+ IG +GL
Sbjct: 225 GEEGAKLISNSLKQLNTL------RIGDNQIGDKGAESISSMKTLTALDLEESNIGPQGL 278
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ + LK L L+ +G S L ++ LTNL I+L T I ++ ++ ++ L+++
Sbjct: 279 EFICQMDQLKSLMLNFNTIGGSRL-PINALTNLTEISLVLTNIGIEIVKSISLITKLRNV 337
Query: 330 NLDARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
N+ ++ D L + SL LT LD+ +T++G YL + KNL L L D
Sbjct: 338 NISDNRLGDECLEIIGNSLFNLTELDISENNMTENGTKYLSSLKNLTHLNAEDNRLNDES 397
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNL 447
++H+ L L L ++ N + D+ LI+ + L ++ N++ T G LK K+L
Sbjct: 398 IQHLCSLKKLKSLYINNN-QVGDEGFALIANSMKQLRLVHAHNNKETEIGRTLLKSRKHL 456
>gi|195121256|ref|XP_002005136.1| GI19235 [Drosophila mojavensis]
gi|193910204|gb|EDW09071.1| GI19235 [Drosophila mojavensis]
Length = 545
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 169/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL +G +L S++LSG
Sbjct: 209 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVVGV----------------PALTSLNLSG 250
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HL+
Sbjct: 251 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 310
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 311 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEA 370
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 371 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 430
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+CQ++D G K ++ L LE+LN+
Sbjct: 431 GINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDQGMLKIAKSLHELENLNIGQ 490
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 491 CSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 539
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 239 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 298
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 299 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYL 358
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 359 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 401
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 402 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSL 461
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++
Sbjct: 462 SLNQCQITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLS 521
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 522 SKGIDIIMKLPKLQKLNL 539
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 243 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLETLEL 301
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL L+ LNL + I+D G+ L + G L+
Sbjct: 302 GGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 357
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 358 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 416
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T
Sbjct: 417 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQIT 469
>gi|413949465|gb|AFW82114.1| hypothetical protein ZEAMMB73_510951 [Zea mays]
Length = 606
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 201/475 (42%), Gaps = 65/475 (13%)
Query: 15 VYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
V+ R + EV L F VN +W+ + S L + L+ ++ +
Sbjct: 69 VFGRSVEEVDLSGFL-------------SVNSEWLAYLGS-FRYLRVLKLADCKNINNDA 114
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ L + L+ LD + C +ISD G++H+ + +L L +T G+ + L NL
Sbjct: 115 VWSLSGMNTLKELDLSRCKKISDAGIKHIVTIESLEKLHLSETE-LTDNGVMLISSLTNL 173
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL L +L+ L KLE L+I W + T+ L L SL ++ ++V
Sbjct: 174 SFLDLGGILMTDKTLQSLQVLTKLEHLDI-WGSETTNEGASALKSFARLLSLNLALTRVN 232
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAAC-------------LDSLSALG------------ 228
I + LN+ C + + C + S + G
Sbjct: 233 HLSIP-----PTTSYLNMSNCEIHSICDVDSEVPVPLENFIVSAATFGNIDKVFSSIQAS 287
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQ 287
SL +L+L+ C+LS+ ++ NLE L+L I D + ++ + NL+ L L +T
Sbjct: 288 SLIHLDLSSCKLSN--LSFLEKMKNLEHLDLSYNIITDGAIEHIAKIGTNLQYLSLKNTG 345
Query: 288 VGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ S L L+G + NL S++L+ T I D +L + + L++++L TS
Sbjct: 346 ITSQALCILAGTVPNLTSLSLANTKIDDSALAYIGMIPLLRTIDLSQ-----------TS 394
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ G H ++ ++ A + K L SL + L+ + + ++L L L +
Sbjct: 395 IKGFIHTEVNSEKLLSMSA--FEHLKYLESLNLEDTPLSAEVIPPLASFATLKYLYLKSD 452
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
L+D L +S + L+ L + ++S GL P L L L C + D
Sbjct: 453 F-LSDPALHALSAASNLIHLGFRGNILSSFGLLQFVPPVTLCVLDLSGCWILTGD 506
>gi|290989399|ref|XP_002677325.1| predicted protein [Naegleria gruberi]
gi|284090932|gb|EFC44581.1| predicted protein [Naegleria gruberi]
Length = 412
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 18/306 (5%)
Query: 94 ISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
+SD ++H G S++ L F + MK ++ + NL L +++C V L
Sbjct: 64 VSDK-IDHKWGFTGSSIKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYL 122
Query: 152 KGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+ +LESLNI + N + K + LTNLK IS + + Y+ ++ LT L
Sbjct: 123 MKIKQLESLNIIPHFSNITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSL 182
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSRLTNLESLNLDSCGI-- 264
++ + L + + L LN+ D+G + L L+SLN++ I
Sbjct: 183 DISNTELYEEYLQEIGKMTHLTSLNI-----GDNGTIPLQYIKSLAGLKSLNINGRFINN 237
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGL 323
G L L L +L L +S + + GL++L +L S+++S+ G+ GS++K+ L
Sbjct: 238 GFYELRELKDLHSLTELSVSHNTIKTKGLKYLIDTFPDLTSLDISYNGL--GSIKKIRKL 295
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L L++ I+D L +T L LT L++ +ITD+GA + ++LR++++
Sbjct: 296 KHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLRNIDVRFND 355
Query: 384 LTDAGV 389
+T+ V
Sbjct: 356 ITNDKV 361
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 278 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-- 334
+K L+ S + S+ ++ S + NL+S+++ I L + L+SLN+
Sbjct: 79 IKKLKFSHLTIKSTDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFS 138
Query: 335 QITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
IT+ + + T+LT L + G + Y+ N K+L SL+I L + ++ I
Sbjct: 139 NITNEEICKICTNLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIG 198
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
++ LT LN+ N + L+ I L GL SLN+ N R + G L+ LK+L SLT
Sbjct: 199 KMTHLTSLNIGDNGTI---PLQYIKSLAGLKSLNI-NGRFINNGFYELRELKDLHSLT-- 252
Query: 454 SCKVTANDIKRLQSRDLPNLVSFRPE 479
V+ N IK ++ L L+ P+
Sbjct: 253 ELSVSHNTIK---TKGLKYLIDTFPD 275
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD--TQVGSSGL-RHLS 297
S D + +S + NL+SL++ C I + V L + L+ L + + + + + + +
Sbjct: 91 STDFMKIYSNMKNLKSLSMKKCRIEKKDFVYLMKIKQLESLNIIPHFSNITNEEICKICT 150
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
LTNL+ +S + +L+ + + SL SL++ ++ + L + +T LT L+
Sbjct: 151 NLTNLKDFGISGMSLQYKTLQYITNMKSLTSLDISNTELYEEYLQEIGKMTHLTSLN--- 207
Query: 358 ARITDSGA---AYLRNFKNLRSLEICGGGLTDA--GVKHIKDLSSLTLLNLSQNCNLTDK 412
I D+G Y+++ L+SL I G + + ++ +KDL SLT L++S N T
Sbjct: 208 --IGDNGTIPLQYIKSLAGLKSLNINGRFINNGFYELRELKDLHSLTELSVSHNTIKTKG 265
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
LI L SL++S + GL +K ++ L+ LT
Sbjct: 266 LKYLIDTFPDLTSLDISYN-----GLGSIKKIRKLKHLT 299
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 58/292 (19%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+SG + L ++ + +L SLD + ++ + L+ + +++LTSL+ N I Q
Sbjct: 160 ISGMSLQYKTLQYITNMKSLTSLDIS-NTELYEEYLQEIGKMTHLTSLNIGDNGTIPLQY 218
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K+ AGL +L I+G +N G +L + L L +L
Sbjct: 219 IKSLAGLKSL---------NINGRFIN-NGFYEL----------------RELKDLHSLT 252
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L +S + + G+ YL ++ P + S + LGS+
Sbjct: 253 ELSVSHNTIKTKGLKYL----------IDTFPDLTSLDISYNGLGSI------------- 289
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
+K +L +L L++ + I D+ L+ +T L L L +S Q+ +G + + +L
Sbjct: 290 --KKIRKLKHLTKLDISNNSISDQDLIYITCLPQLTKLNISSNQITDNGALLFASMESLR 347
Query: 304 SINLSFTGIS-DGSLRKLAGLSSLK----SLNLDARQITDTGLAALTSLTGL 350
+I++ F I+ D + + L LK SL +R+ D G A L+ L L
Sbjct: 348 NIDVRFNDITNDKVFQGMINLEKLKFKSFSLEPSSRKNKD-GQACLSILFTL 398
>gi|428173790|gb|EKX42690.1| hypothetical protein GUITHDRAFT_73681, partial [Guillardia theta
CCMP2712]
Length = 439
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 167/376 (44%), Gaps = 29/376 (7%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
GLS+L L + NN ++ G F GL +L LDL + G L++L++
Sbjct: 64 GLSSLQQL-YVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSL- 121
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT+ GL LK L + ++++ GL L +L+L VT+ ++
Sbjct: 122 FSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSNA 181
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
S L L L+LN Q+SD F+ L+ L++LNL+S + GL L+ L+L
Sbjct: 182 FSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQL 241
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++ S + GL+ LE +++SF + GLS+LK L++ QI+ A
Sbjct: 242 DGNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDIQNNQISSISSGA 301
Query: 344 LTSLTGLTHLDLFGARITD------SGAAYLRN--------------------FKNLRSL 377
LT LT L L G ++T G YL + F NL L
Sbjct: 302 FNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQLECISSNAFASLLFLNLEEL 361
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ LT + LS L L LS N ++ + + +GL+ L LN+ ++ + S
Sbjct: 362 YLSYNQLTSLPLGVFNGLSKLVTLTLSNN-HVKELPAGVFNGLSSLKFLNLGHNELESLP 420
Query: 438 LRHLKPLKNLRSLTLE 453
L L +L +TLE
Sbjct: 421 LNLFDGLTSLEQVTLE 436
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 10/343 (2%)
Query: 119 ITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T+ + F GL +L L+L R + + G+ GL L+ L + N + +
Sbjct: 6 LTSLPLGVFNGLSSLQTLELSNNRLSSLSEGV--FSGLSALQFLQLH-HNALLNLPSNVF 62
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL++L+ L + + ++ G KGL L L+L ++ DS + SL L+L
Sbjct: 63 DGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLSLF 122
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 294
++++ + F L L+ L L + EG+ +GL L+ L L + +V S
Sbjct: 123 SNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGV--FSGLSGLQILSLYNNRVTSLPSN 180
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
SGL+ L+ ++L+ ISD SL GLS LK+LNL++ Q++ A L+ L L
Sbjct: 181 AFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSNQLSSLPSNAFFGLSALQQLQ 240
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L G RI+ L L + L + LS+L LL++ QN ++ +
Sbjct: 241 LDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSSNFNGLSALKLLDI-QNNQISSISS 299
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+GLT L SL+++ +++TS L+ L SL L S ++
Sbjct: 300 GAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLILSSNQL 342
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 28/356 (7%)
Query: 105 LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
S L++L F + +NA+ F GL +L +L + G KGL L++L++
Sbjct: 38 FSGLSALQFLQLHHNALLNLPSNVFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDL 97
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N ++ +G ++L++L + +K+T+ +GL L L L +++
Sbjct: 98 SY-NQLSTLPPDSFNGSSSLQTLSLFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEG 156
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
S L L L+L +++ FS L+ L+ L+L++ I D L GL LK L
Sbjct: 157 VFSGLSGLQILSLYNNRVTSLPSNAFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLN 216
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L+ Q+ S GL+ L+ + L IS S+ GLS+L+ L++ Q+ +
Sbjct: 217 LNSNQLSSLPSNAFFGLSALQQLQLDGNRISSISMDAFDGLSALEELHMSFNQLQTVLSS 276
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA------GVKHIKDL- 395
L+ L LD+ +I+ + L SL + G LT G+++++ L
Sbjct: 277 NFNGLSALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI 336
Query: 396 --------------SSLTLLNLSQ----NCNLTDKTLELISGLTGLVSLNVSNSRI 433
+SL LNL + LT L + +GL+ LV+L +SN+ +
Sbjct: 337 LSSNQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHV 392
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 147/340 (43%), Gaps = 40/340 (11%)
Query: 15 VYSRCLTEVSLEAFR-----------DCALQDLCLGQYPGVND-KWMDVIASQGSSLLSV 62
++S +T +S +AFR D L L G + G++ + + + ++ +SL S
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
SG V LQ LD N QISD L GLS L +L+ N +++
Sbjct: 181 AFSGLSV-------------LQELDLN-NNQISDISLSAFNGLSGLKTLNLNSN-QLSSL 225
Query: 123 GMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
AF GL L +L L+ R + I + GL LE L++ + N + +GL+
Sbjct: 226 PSNAFFGLSALQQLQLDGNRISSI--SMDAFDGLSALEELHMSF-NQLQTVLSSNFNGLS 282
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNR 237
LK L I ++++ GL LT L+L G +T A D L L SL L+
Sbjct: 283 ALKLLDIQNNQISSISSGAFNGLTALTSLSLNGNKLTSIPAGVFDGLQYLESLI---LSS 339
Query: 238 CQLSDDGCEKFSRLT--NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
QL F+ L NLE L L + L GL L L LS+ V
Sbjct: 340 NQLECISSNAFASLLFLNLEELYLSYNQLTSLPLGVFNGLSKLVTLTLSNNHVKELPAGV 399
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+GL++L+ +NL + L GL+SL+ + L+ Q
Sbjct: 400 FNGLSSLKFLNLGHNELESLPLNLFDGLTSLEQVTLEWNQ 439
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 6/291 (2%)
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ S +T + GL L L L +++ S L +L +L L+ L +
Sbjct: 1 MYWSYLTSLPLGVFNGLSSLQTLELSNNRLSSLSEGVFSGLSALQFLQLHHNALLNLPSN 60
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
F L++L+ L + + + G GL +L+ L+LS Q+ + +G ++L++++
Sbjct: 61 VFDGLSSLQQLYVHNNVLSTLGPNTFKGLASLQNLDLSYNQLSTLPPDSFNGSSSLQTLS 120
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L I++ S GL LK L L Q++ + L+GL L L+ R+T +
Sbjct: 121 LFSNKITNISSDAFRGLPGLKYLGLFDNQLSSLSEGVFSGLSGLQILSLYNNRVTSLPSN 180
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L+ L++ ++D + LS L LNL+ N L+ GL+ L L
Sbjct: 181 AFSGLSVLQELDLNNNQISDISLSAFNGLSGLKTLNLNSN-QLSSLPSNAFFGLSALQQL 239
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ +RI+S + L LE ++ N ++ + S + L + +
Sbjct: 240 QLDGNRISSISMDAFDGLS-----ALEELHMSFNQLQTVLSSNFNGLSALK 285
>gi|326430775|gb|EGD76345.1| variable lymphocyte receptor [Salpingoeca sp. ATCC 50818]
Length = 1124
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 164/389 (42%), Gaps = 23/389 (5%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GLS LT+L+ R + Q + A F GL +L +LDL GL +ESLN
Sbjct: 229 GLSALTTLNLNR---VPLQTLSAQTFQGLSSLTELDLSNKKIAAIPTQAFVGLSSIESLN 285
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N ++ +S + L SL +S +T L L + L+G P+
Sbjct: 286 LQG-NPLSKLSEGAISDMPKLTSLDLSNLAITAIPARSFDNLAALGNITLQGNPIAQLTN 344
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
S S++ SL L+L+RC+L+ F+ T L +L L I L GL L
Sbjct: 345 ASFSSVPSLHTLDLSRCKLTSVPAAAFTAATRLSALTLARNAITTIAARALRGLSKLTAF 404
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
++S+ + + GLT+L ++NL+ T + L L +L S++ +
Sbjct: 405 DISNNPLRALPASIFQGLTSLATLNLAHTNCTLLPPALLTPLHALTSISAAGTPLRAIAT 464
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTL 400
L L HLDL ARIT L N L L + G L + + DLSSLT
Sbjct: 465 GTFDGLPALQHLDLSNARITALAPHSLHNLPRLHDLALGGNPLANISSHALGGDLSSLTT 524
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L+LS + +SG T L +L + ++ IT+ L L +L + S A
Sbjct: 525 LDLSA-LRIAAIAPHAMSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALAT 583
Query: 461 ---------------DIKRLQSRDLPNLV 474
D+ RL +LP+ V
Sbjct: 584 LAGGAFDGLSALATLDLSRLPVAELPSHV 612
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 5/360 (1%)
Query: 75 IHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
+ D + + LDF N +S ++ L + + NN IT+ AFA L
Sbjct: 76 LQFDDGTPIAQLDFSNNLISMVSAAAFQNAVSLQHTLTALILDNNPITSIEAGAFATLTA 135
Query: 133 LVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L++ ++ G L N+ + N + GLT+L+SL ++ +
Sbjct: 136 LNHLNMSSL-KLAGALSGNMFSTLTALLTLQLDGNQLDTLPANAFDGLTSLQSLNLANNP 194
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
++ +GL L L+L G P++ S + L +L LNLNR L + F L
Sbjct: 195 ISILNADTFQGLSSLLSLSLAGAPISTLSSSSFAGLSALTTLNLNRVPLQTLSAQTFQGL 254
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
++L L+L + I GL +++ L L + +S + L S++LS
Sbjct: 255 SSLTELDLSNKKIAAIPTQAFVGLSSIESLNLQGNPLSKLSEGAISDMPKLTSLDLSNLA 314
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I+ R L++L ++ L I A+ +S+ L LDL ++T AA
Sbjct: 315 ITAIPARSFDNLAALGNITLQGNPIAQLTNASFSSVPSLHTLDLSRCKLTSVPAAAFTAA 374
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L + +T + ++ LS LT ++S N L + GLT L +LN++++
Sbjct: 375 TRLSALTLARNAITTIAARALRGLSKLTAFDISNNP-LRALPASIFQGLTSLATLNLAHT 433
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 156/402 (38%), Gaps = 52/402 (12%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
D S+L +LD + ++I+ + G +NLT+L +NAITA FAGL L L +
Sbjct: 518 DLSSLTTLDLS-ALRIAAIAPHAMSGATNLTTL-LLDHNAITALAADTFAGLSRLATLRI 575
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ L L G GL+ L +L +S V +
Sbjct: 576 TS----NPALATLAG--------------------GAFDGLSALATLDLSRLPVAELPSH 611
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
G+ L + L G + ++ + L + ++L LS F L L SL+
Sbjct: 612 VFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSLPSHAFGALPALTSLS 671
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL 317
LD+ + G L + + + R SG T + S+NL+ I+ +
Sbjct: 672 LDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAVRSLNLAHNAITTIAP 731
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
GLSS L L I + L LT LDL + +T + NL +L
Sbjct: 732 DAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTGIVSGSFSGLANLTTL 791
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC--NLTD---------KTLEL---------- 416
+ L LSSL L+++ C L D +TL L
Sbjct: 792 TVDTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVHVRTLSLRNSSLAGAAV 851
Query: 417 ----ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
GL+ LV+L++SN+ +T+ G + +PL R+L L S
Sbjct: 852 STLTFDGLSQLVALDLSNNDMTAIGDKAFRPLSATRTLNLSS 893
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 33/330 (10%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLF 231
+SG TNL +L + + +T GL +L L + P A D LSAL +L
Sbjct: 540 MSGATNLTTLLLDHNAITALAADTFAGLSRLATLRITSNPALATLAGGAFDGLSALATL- 598
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNL---DSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+L+R +++ F+ +++L+S+ L D + NL+ + + +S + +
Sbjct: 599 --DLSRLPVAELPSHVFAGMSSLQSVVLTGVDLHTLQPNAFANLSHVAAISLAGMSLSSL 656
Query: 289 GSSGLRHLSGLTNLE-------SIN---------------LSFTGISDGSLRKLAGLSSL 326
S L LT+L S+N LS GI+ R +G +++
Sbjct: 657 PSHAFGALPALTSLSLDNNPLASLNTDTFAGPLPLLTTLDLSSHGITALPPRTFSGATAV 716
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SLNL IT A L+ T L L G I A L SL++ LT
Sbjct: 717 RSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGLGALTSLDLSTSALTG 776
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
L++LT L + +L +GL+ L L+++N+ +T+ L PL +
Sbjct: 777 IVSGSFSGLANLTTLTV-DTPHLRHLFPGSFTGLSSLHHLSIANTCVTALPDGVLSPLVH 835
Query: 447 LRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+R+L+L + + + L L LV+
Sbjct: 836 VRTLSLRNSSLAGAAVSTLTFDGLSQLVAL 865
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT + SG T ++SL ++ + +T GL T L L G P+ S + L
Sbjct: 702 ITALPPRTFSGATAVRSLNLAHNAITTIAPDAFLGLSSATQLVLAGNPIAHVSAGSFAGL 761
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G+L L+L+ L+ FS L NL +L +D+ + + TGL +L L +++T
Sbjct: 762 GALTSLDLSTSALTGIVSGSFSGLANLTTLTVDTPHLRHLFPGSFTGLSSLHHLSIANTC 821
Query: 288 VGS------SGLRHL--------------------SGLTNLESINLS---FTGISDGSLR 318
V + S L H+ GL+ L +++LS T I D + R
Sbjct: 822 VTALPDGVLSPLVHVRTLSLRNSSLAGAAVSTLTFDGLSQLVALDLSNNDMTAIGDKAFR 881
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL--FGARITDSGAAYLRNFKNLRS 376
L S+ ++LNL + + + AA G+ L + + + A L + +LRS
Sbjct: 882 PL---SATRTLNLSSNALGNFTQAASHVFKGMKALQVLDLSSNPFSTPPANLASLSSLRS 938
Query: 377 -------LEICG-GGLTDAGV 389
L+ CG L D+GV
Sbjct: 939 VCMGDVPLDCCGLEDLRDSGV 959
>gi|290993104|ref|XP_002679173.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284092789|gb|EFC46429.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 370
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 31/284 (10%)
Query: 197 IAYLKGLQKLTLL-NLEGCPVTAACLDS-----LSALGSLFYLNLNRCQLSDDGCEKFSR 250
I YL L L L+ NL+ + + LDS +S + SL L+LN ++SD+G + S+
Sbjct: 83 IGYL--LNSLCLMRNLQELYLVSKELDSNDAQVISEMKSLTKLDLNGNRISDEGVDFISK 140
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
++ L L +DS + DEG ++ G+ L+ L++S+ G +S + NL +++S
Sbjct: 141 MSGLTYLRIDSNAVHDEGAKSIQGMKGLRTLKVSNNSFFEVGFEAISQMGNLTKLDMSEN 200
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ + + + +L SL +D I G+ L + LT L + +I + GA Y+
Sbjct: 201 SLGIEGTKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGE 260
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------CNLTDKT-LELISG 419
K L L+I + + G K I L+ LT+L++ +N NL T L++ S
Sbjct: 261 LKQLTILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSN 320
Query: 420 ------------LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L L LN+S + I + ++ +KNL+SLT
Sbjct: 321 NIGHLGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSLT 364
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 126/256 (49%), Gaps = 1/256 (0%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+D + +S + +L L ++ ++++D G+ ++ + LT L ++ V S+ + L
Sbjct: 109 NDAQVISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRIDSNAVHDEGAKSIQGMKGL 168
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L ++ + G E S++ NL L++ +G EG ++ + NL L++ +GS
Sbjct: 169 RTLKVSNNSFFEVGFEAISQMGNLTKLDMSENSLGIEGTKSIGIMKNLTSLKIDYNHIGS 228
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G+++L+ + L +++ I + + + L L L++ + + G ++++L L
Sbjct: 229 EGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQLTILDISFNYVGEKGAKSISTLNKL 288
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LD+ I ++GA L N L L+I + G K + L+ L LN+S N N+
Sbjct: 289 TMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGHLGAKSLVKLNQLKELNISYN-NIN 347
Query: 411 DKTLELISGLTGLVSL 426
D + +I + L SL
Sbjct: 348 DLEINIIRQMKNLKSL 363
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 128/279 (45%), Gaps = 29/279 (10%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
+ S+ SL +DL+G+ ++D G+ + S L L + + D G + ++G+ L +L
Sbjct: 113 VISEMKSLTKLDLNGNRISDEGVDFISKMSGLTYLRID-SNAVHDEGAKSIQGMKGLRTL 171
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
NN+ G +A + + NL KLD+ E I G
Sbjct: 172 KV-SNNSFFEVGFEAISQMGNLTKLDMSENSLGIEG------------------------ 206
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K + + NL SL+I + + G+ YL +++LT L++ + + L L
Sbjct: 207 --TKSIGIMKNLTSLKIDYNHIGSEGVKYLNEMKQLTKLSIVENQIDEEGAKYIGELKQL 264
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+++ + + G + S L L L++ IG+ G ++L+ L L L+++ +G
Sbjct: 265 TILDISFNYVGEKGAKSISTLNKLTMLDIIENNIGENGAISLSNLNQLTKLDINSNNIGH 324
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
G + L L L+ +N+S+ I+D + + + +LKSL
Sbjct: 325 LGAKSLVKLNQLKELNISYNNINDLEINIIRQMKNLKSL 363
>gi|290982223|ref|XP_002673830.1| predicted protein [Naegleria gruberi]
gi|284087416|gb|EFC41086.1| predicted protein [Naegleria gruberi]
Length = 572
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 37/302 (12%)
Query: 151 LKGLMKLESLNIKWC----NCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYLKGLQK 205
+ + KLES+ +C N + + +MK +S L NLK IS ++ + + L L+K
Sbjct: 214 FEHIRKLESITDLFCLTFRNNLFEEEMKFISPLGNLKKFHFISKGRIKEEAVKDLSTLKK 273
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L L+L+ +TA F L N++SLNL + IG
Sbjct: 274 LEELHLDNNLITAC---------------------------NFPYLENMKSLNLQNNRIG 306
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
+EG +NL L NL L LS+ +G GL++ L+ L+ +NLS + D L+
Sbjct: 307 NEGAINLCSLSNLTELNLSNNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVK 366
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L++L+L I + GL +L L +L L +I + G YL N L L + +
Sbjct: 367 LENLSLKESLIGEEGLRNFGNLKLLKYLMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIG 425
Query: 386 DAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RITSAGLRHLK 442
D V + + +L L++S N ++ K ++IS + L LN+SN+ I GL L
Sbjct: 426 DESVIELFRSEFRNLIHLDISHNY-VSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLS 484
Query: 443 PL 444
PL
Sbjct: 485 PL 486
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 151/329 (45%), Gaps = 40/329 (12%)
Query: 94 ISDGGLEHLRGLSNLTSL---SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV- 149
I EH+R L ++T L +FR N + + MK + L NL K RI V
Sbjct: 209 IEKSIFEHIRKLESITDLFCLTFRNN--LFEEEMKFISPLGNLKKFHFISKGRIKEEAVK 266
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
+L L KLE L++ N IT + L N+KSL + +++ + G L L LT L
Sbjct: 267 DLSTLKKLEELHLD-NNLITACN---FPYLENMKSLNLQNNRIGNEGAINLCSLSNLTEL 322
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
NL + L L L LNL+ Q+ D G S LE+L+L IG+EGL
Sbjct: 323 NLSNNLIGGQGLKYFYKLSQLKILNLSSNQVGDVGANYLSENVKLENLSLKESLIGEEGL 382
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL--------- 320
N L LK L L++ ++G+ GL++LS LE +++ I D S+ +L
Sbjct: 383 RNFGNLKLLKYLMLNNNKIGN-GLKYLSNCNELEYLHVGSNDIGDESVIELFRSEFRNLI 441
Query: 321 -----------------AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ ++ LK LN+ + I DTGL+ L+ L+ + L+ ++D
Sbjct: 442 HLDISHNYVSYKCCDVISKMNQLKELNISNNPSIGDTGLSLLSPLS-IIKLEANNCGVSD 500
Query: 363 SGAAYLRNFK-NLRSLEICGGGLTDAGVK 390
SG NF+ + +L I L++ ++
Sbjct: 501 SGIIDYLNFEPKISTLHIKSNKLSNMTLQ 529
>gi|17549135|ref|NP_522475.1| GALA protein 1 [Ralstonia solanacearum GMI1000]
gi|17431386|emb|CAD18065.1| lrr-gala family type III effector protein (gala 1) [Ralstonia
solanacearum GMI1000]
Length = 661
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 28/377 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++D+ G+ + D+G L +++ SLD +F I G L + LTSL N
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFN-DIGVAGARALAANTTLTSLDLGFN 246
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
AI +G++A A +L L + C G L L S+++ CN I + + L
Sbjct: 247 -AIGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLT-CNHIGEEGAEGL 304
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ T L SL ++ + ++D G A L G LT L C+ N N
Sbjct: 305 AANTVLTSLDLTRNSISDRGAAALAGNTTLTSL----------CV------------NFN 342
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+ G + T L +L++ IGD G + L L+ L + ++G G R L
Sbjct: 343 --DIYGRGARWLAENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVVAGRIGVEGARAL 400
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+G T L ++++S I + + LA ++L +L+L + ++ A + T L LD+
Sbjct: 401 AGNTTLTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIG 460
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
RI +GA L + L +L + G + AG + + SLT LN+SQN ++ +
Sbjct: 461 ENRIEAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQN-DIRSAGAQA 519
Query: 417 ISGLTGLVSLNVSNSRI 433
++ T L SL+VS++ I
Sbjct: 520 LAANTSLTSLDVSSASI 536
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 157/348 (45%), Gaps = 3/348 (0%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
SVDL+ + + + G L + L SLD ISD G L G + LTSL N+ I
Sbjct: 288 SVDLTCNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSLCVNFND-IY 345
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G + A L LD+ G + L M L SL++ I + L+G T
Sbjct: 346 GRGARWLAENTTLTTLDISYNPIGDWGALGLADNMTLRSLSVV-AGRIGVEGARALAGNT 404
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L +L IS + + + G L LT L+L C + AA ++ A +L L++ ++
Sbjct: 405 TLTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRI 464
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
G + + T L +L + IG G L +L L +S + S+G + L+ T
Sbjct: 465 EAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANT 524
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
+L S+++S I + LA +S+ LN++ I D G AL + LT L I
Sbjct: 525 SLTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFI 584
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+G L L SL I G + DAGVK + ++LT L + + +
Sbjct: 585 GTAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKRVD 632
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 137/306 (44%), Gaps = 28/306 (9%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
T L +L I + + D+G L +T L+ + A +L+A +L L+L
Sbjct: 188 TTLTALDIRGNGIGDAGAQALAANTSITSLDASFNDIGVAGARALAANTTLTSLDLGFNA 247
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+ D+G + + T+L SL + SC IGD G L L ++L+ +G G L+
Sbjct: 248 IGDEGLQALATNTSLTSLTVGSCEIGDAGAAALANNTALTSVDLTCNHIGEEGAEGLAAN 307
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T L S++L+ ISD LAG ++L SL ++ I G L T LT LD+
Sbjct: 308 TVLTSLDLTRNSISDRGAAALAGNTTLTSLCVNFNDIYGRGARWLAENTTLTTLDISYNP 367
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-----------CN 408
I D GA L + LRSL + G + G + + ++LT L++S N N
Sbjct: 368 IGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTTLTTLDISVNAIGNEGAQALAAN 427
Query: 409 LTDKTLELIS------------GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
T TL L S T L SL++ +RI +AG + L + L + +
Sbjct: 428 ATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIEAAGAQALAD-----NTALTTLR 482
Query: 457 VTANDI 462
VT N I
Sbjct: 483 VTGNQI 488
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 184/403 (45%), Gaps = 14/403 (3%)
Query: 30 DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
+ L L LG + + D+ + +A+ +SL S+ + ++ D+G L + + L S+D
Sbjct: 235 NTTLTSLDLG-FNAIGDEGLQALATN-TSLTSLTVGSCEIGDAGAAALANNTALTSVDLT 292
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR---IHG 146
C I + G E L + LTSL RN +I+ +G A AG L L C I+G
Sbjct: 293 -CNHIGEEGAEGLAANTVLTSLDLTRN-SISDRGAAALAGNTTLTSL----CVNFNDIYG 346
Query: 147 -GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G L L +L+I + N I D L+ L+SL + ++ G L G
Sbjct: 347 RGARWLAENTTLTTLDISY-NPIGDWGALGLADNMTLRSLSVVAGRIGVEGARALAGNTT 405
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT L++ + +L+A +L L+L C+L E F T L SL++ I
Sbjct: 406 LTTLDISVNAIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDIGENRIE 465
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
G L L L ++ Q+G +G + L+ +L +N+S I + LA +S
Sbjct: 466 AAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQALAANTS 525
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L SL++ + I G AL + T +T L++ I D+GA L L SL C +
Sbjct: 526 LTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLYACDNFIG 585
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
AGV+ + + LT L++ N + D ++ ++ T L L +
Sbjct: 586 TAGVQALAANTRLTSLSIWGN-RIGDAGVKALAANTTLTKLTI 627
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 7/292 (2%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G +W+ ++ ++L ++D+S + + D G + L D L+SL +I G L
Sbjct: 346 GRGARWL----AENTTLTTLDISYNPIGDWGALGLADNMTLRSLSV-VAGRIGVEGARAL 400
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
G + LT+L N AI +G +A A L L L C K L SL+I
Sbjct: 401 AGNTTLTTLDISVN-AIGNEGAQALAANATLTTLSLRSCELRAAAAEAFKANTTLASLDI 459
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I + + L+ T L +L+++ +++ +G L + LT LN+ + +A
Sbjct: 460 G-ENRIEAAGAQALADNTALTTLRVTGNQIGMAGAQALAANRSLTKLNISQNDIRSAGAQ 518
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+L+A SL L+++ + G + + T++ LN++ IGD G L L L
Sbjct: 519 ALAANTSLTSLDVSSASIGAAGAQALAANTSITWLNINDNHIGDAGAQALAAHPALTSLY 578
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
D +G++G++ L+ T L S+++ I D ++ LA ++L L + R
Sbjct: 579 ACDNFIGTAGVQALAANTRLTSLSIWGNRIGDAGVKALAANTTLTKLTIGKR 630
>gi|290997259|ref|XP_002681199.1| predicted protein [Naegleria gruberi]
gi|284094822|gb|EFC48455.1| predicted protein [Naegleria gruberi]
Length = 449
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 35/290 (12%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L L I CSK + I + L LT LN C +++ L L L L L
Sbjct: 155 KSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYLNASQCNISSVNLKFLQ-LFKLTKL 213
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+L++ + DG + + LTNL+ LNL C I ++ + +LT L L L + D +G+ GL
Sbjct: 214 DLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDCITHLTSLTKLVHLNVGDNYIGNEGL 273
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+S L NL++ + G+ R+ + RQ+
Sbjct: 274 FLISSLR-----NLTYLSVERGTGRR-----------FNERQVDIANQ------------ 305
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
G I G A+L N NLR L+ G + D G++ I L+S+ +LN+S+ CN +
Sbjct: 306 ---GMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSR-CNCSGD- 360
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+E + L++LN+ + I G L + L L +C ++ + +K
Sbjct: 361 IESLQKSPHLINLNIVGNPIGDKGAEILSRM-TLEELNARNCGISYDGVK 409
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 30/283 (10%)
Query: 185 LQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-LNRCQLS 241
+Q+S C V + + +L L++LTLL P+ + GS++YLN + ++
Sbjct: 22 IQLSQCPTVDELKALRHLSALKELTLL--RELPL---------SYGSIYYLNNITSLKVR 70
Query: 242 DDGCEKFSRLTNLESLNL-----DSCGIGDEGLVNLTGLCNLKCLE-----LSDTQVGSS 291
+ R+ +L+ L + + D + + +C LK LE + ++
Sbjct: 71 FNTVVLIPRMNHLKHLEILENPNEKSQFTD---IRVGTICKLKNLESFVVRFPNPRLPPE 127
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
LS L+ L + +S +D K ++ S L LN+ + + + ++ SL+ L
Sbjct: 128 YFEKLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNL 187
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T+L+ I+ +L+ FK L L++ + G+K I L++L LNL Q+CN+T
Sbjct: 188 TYLNASQCNISSVNLKFLQLFK-LTKLDLSKNNIGGDGMKVIALLTNLKYLNL-QDCNIT 245
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
+ + ++ LT LV LNV ++ I + GL + L+NL L++E
Sbjct: 246 NDCITHLTSLTKLVHLNVGDNYIGNEGLFLISSLRNLTYLSVE 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 103/239 (43%), Gaps = 46/239 (19%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
SNL L+ + C IS L+ L+ L LT L +NN I GMK A L NL L+L+
Sbjct: 185 SNLTYLNASQC-NISSVNLKFLQ-LFKLTKLDLSKNN-IGGDGMKVIALLTNLKYLNLQD 241
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS---------- 190
C + + +L L KL LN+ N I + + +S L NL L +
Sbjct: 242 CNITNDCITHLTSLTKLVHLNV-GDNYIGNEGLFLISSLRNLTYLSVERGTGRRFNERQV 300
Query: 191 -------KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS-- 241
++ GIA+L L L L+ G P+ ++ + L S+ LN++RC S
Sbjct: 301 DIANQGMEINHQGIAHLTNLHNLRHLDFSGKPICDKGIEFIGKLNSIEILNVSRCNCSGD 360
Query: 242 ---------------------DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
D G E SR+T LE LN +CGI +G V L G +K
Sbjct: 361 IESLQKSPHLINLNIVGNPIGDKGAEILSRMT-LEELNARNCGISYDG-VKLIGNSKIK 417
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 6/186 (3%)
Query: 285 DTQVGSSGLRHLSGLTNLESINL--SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+T V + HL L LE+ N FT I G++ KL L S + ++
Sbjct: 72 NTVVLIPRMNHLKHLEILENPNEKSQFTDIRVGTICKLKNLESF-VVRFPNPRLPPEYFE 130
Query: 343 ALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L+ L+ LT L++ D A + F L L I + + + LS+LT L
Sbjct: 131 KLSVLSKLTELEISTDSSNDWEKAKSISTFSQLTKLNIQCSKNINMIITSVGSLSNLTYL 190
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
N SQ CN++ L+ + L L L++S + I G++ + L NL+ L L+ C +T +
Sbjct: 191 NASQ-CNISSVNLKFLQ-LFKLTKLDLSKNNIGGDGMKVIALLTNLKYLNLQDCNITNDC 248
Query: 462 IKRLQS 467
I L S
Sbjct: 249 ITHLTS 254
>gi|290987592|ref|XP_002676506.1| predicted protein [Naegleria gruberi]
gi|284090109|gb|EFC43762.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 111/227 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L+I + + D +++LT L++ ++ + + L YLN+N
Sbjct: 32 MKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTN 91
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ + G + S+L L +LN+ IG++G ++ + L L + +G+ G H+S
Sbjct: 92 NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANHISR 151
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L S+N G+ D ++ ++ L+ L LN+ I++ GL ++ + + HLD+
Sbjct: 152 MKQLISLNTGRNGLDDEGVKYISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNN 211
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
I D GA + K L L+I + + G K+I ++ LT L++ +
Sbjct: 212 FIDDEGAEIISRMKQLTRLDISNNSIGEEGTKYISEMKKLTYLDIGE 258
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
F + L L + IGD+ + L L++ + G + + +T L +N+
Sbjct: 29 FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNV 88
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ + + + ++ L+ L +LN+ I + G ++ + LT L+++ I + GA +
Sbjct: 89 NTNNVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNIGNRGANH 148
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ K L SL GL D GVK+I +L+ L LN++ + N++++ L ISG+ ++ L+
Sbjct: 149 ISRMKQLISLNTGRNGLDDEGVKYISELNQLNFLNIA-DSNISEEGLNYISGMKQIIHLD 207
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+SN+ I G + +K L L +
Sbjct: 208 ISNNFIDDEGAEIISRMKQLTRLDI 232
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 9/255 (3%)
Query: 179 LTNLKSLQISCSKVT----DSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L N+ +L+ +CS+ DSGI +K L KL + A C + L SL
Sbjct: 6 LPNIVTLEWTCSRYQKFTFDSGIFGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSL--- 62
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
++ +S +G + +T L LN+++ +G+ G ++ L L L + +G G
Sbjct: 63 DVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKLNQLITLNIGLNSIGEQGA 122
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++S + L +N+ I + ++ + L SLN + D G+ ++ L L L
Sbjct: 123 EYISEMKQLTDLNIYSCNIGNRGANHISRMKQLISLNTGRNGLDDEGVKYISELNQLNFL 182
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
++ + I++ G Y+ K + L+I + D G + I + LT L++S N + ++
Sbjct: 183 NIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLDISNNS-IGEEG 241
Query: 414 LELISGLTGLVSLNV 428
+ IS + L L++
Sbjct: 242 TKYISEMKKLTYLDI 256
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 3/207 (1%)
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ L SLD + IS G + + ++ LT L+ NN + G K + L L+ L++
Sbjct: 55 EMKQLTSLDV-YHNNISKEGAKFIGEMTQLTYLNVNTNN-VGELGAKYISKLNQLITLNI 112
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
+ G + + +L LNI CN I + +S + L SL + + D G+
Sbjct: 113 GLNSIGEQGAEYISEMKQLTDLNIYSCN-IGNRGANHISRMKQLISLNTGRNGLDDEGVK 171
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
Y+ L +L LN+ ++ L+ +S + + +L+++ + D+G E SR+ L L+
Sbjct: 172 YISELNQLNFLNIADSNISEEGLNYISGMKQIIHLDISNNFIDDEGAEIISRMKQLTRLD 231
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ + IG+EG ++ + L L++ +
Sbjct: 232 ISNNSIGEEGTKYISEMKKLTYLDIGE 258
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I D + + + L SL++ I+ G + +T LT+L++ + + GA Y+
Sbjct: 45 IGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQLTYLNVNTNNVGELGAKYISKL 104
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L I + + G ++I ++ LT LN+ +CN+ ++ IS + L+SLN +
Sbjct: 105 NQLITLNIGLNSIGEQGAEYISEMKQLTDLNIY-SCNIGNRGANHISRMKQLISLNTGRN 163
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVT 458
+ G++++ L L L + ++
Sbjct: 164 GLDDEGVKYISELNQLNFLNIADSNIS 190
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D+G+ ++ LT L + I D A K L SL++ ++ G K I +++
Sbjct: 25 DSGI--FGTMKQLTKLKIGENNIGDQNAKCFIEMKQLTSLDVYHNNISKEGAKFIGEMTQ 82
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LT LN++ N N+ + + IS L L++LN+ + I G ++ +K L L + SC +
Sbjct: 83 LTYLNVNTN-NVGELGAKYISKLNQLITLNIGLNSIGEQGAEYISEMKQLTDLNIYSCNI 141
Query: 458 ---TANDIKRLQS 467
AN I R++
Sbjct: 142 GNRGANHISRMKQ 154
>gi|343423900|emb|CCD18013.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 648
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 202/387 (52%), Gaps = 35/387 (9%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT-AQGMKAFAGLINLVK 135
L + S+L++LD + C I+D + L S+L +L IT + F+ +L
Sbjct: 131 LSELSSLRTLDLSHCTGITD--VSPLLKFSSLHTLDLSHCTGITDVSPLLMFS---SLRM 185
Query: 136 LDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVT 193
LD+ CT G+ N+ L KL SL + + C +++ PLS L++L++L IS C+ +T
Sbjct: 186 LDISHCT----GITNVSPLSKLSSLRTLYFLYCTGITNVSPLSELSSLRTLDISHCTGIT 241
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D ++ L L L +L+L C + + LS + +L L+L+ C D S++
Sbjct: 242 D--VSPLSELSSLRMLDLSHC-TDISNVSRLSKIIALQKLDLSHCTGVTD-VSPLSKMIG 297
Query: 254 LESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TG 311
LE L L C GI D + L+ L +L+ L LS G + + LS ++L +++LS TG
Sbjct: 298 LEKLYLSHCTGITD--VPPLSELSSLRMLNLSHCT-GITDVSPLSEFSSLHTLDLSHCTG 354
Query: 312 ISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 369
I+D S L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD + L
Sbjct: 355 ITDVS--PLSELSSLRTLDLSHCTGITD--VSPLSELSSLCTLDLSHCTGITD--VSPLS 408
Query: 370 NFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+L +LE+ G+TD V + +LSSL L+LS +TD + +S L+GL L +
Sbjct: 409 KLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSGLRMLYL 464
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESC 455
S+ + + L L +LR L L C
Sbjct: 465 SHCP-SITDVSPLSELSSLRMLNLSHC 490
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 128/379 (33%), Positives = 195/379 (51%), Gaps = 40/379 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L+ LD + C I++ + L LS+L +L F IT + + L +L LD+
Sbjct: 181 SSLRMLDISHCTGITN--VSPLSKLSSLRTLYFLYCTGIT--NVSPLSELSSLRTLDISH 236
Query: 141 CTRIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGI 197
CT G+ ++ L +L SL + +C S++ LS + L+ L +S C+ VTD S +
Sbjct: 237 CT----GITDVSPLSELSSLRMLDLSHCTDISNVSRLSKIIALQKLDLSHCTGVTDVSPL 292
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
+ + GL+KL L + G +T LS L SL LNL+ C D S ++L +L
Sbjct: 293 SKMIGLEKLYLSHCTG--ITDV--PPLSELSSLRMLNLSHCTGITD-VSPLSEFSSLHTL 347
Query: 258 NLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDG 315
+L C GI D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D
Sbjct: 348 DLSHCTGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLCTLDLSHCTGITDV 404
Query: 316 SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKN 373
S L+ LSSL +L L ITD ++ L+ L+ L LDL ITD + L
Sbjct: 405 S--PLSKLSSLCTLELSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSG 458
Query: 374 LRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-S 431
LR L + +TD V + +LSSL +LNLS +TD +S L+ SL++ S
Sbjct: 459 LRMLYLSHCPSITD--VSPLSELSSLRMLNLSHCTGITD-----VSPLSEFSSLHILGLS 511
Query: 432 RITSAGLRHLKPLKNLRSL 450
T G+ + PL L SL
Sbjct: 512 HCT--GITDVSPLSKLSSL 528
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 134/423 (31%), Positives = 199/423 (47%), Gaps = 74/423 (17%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L L I + + +I L KL
Sbjct: 223 LSELSSLRTLDISHCTGITD--VSPLSELSSLRMLDLSHCTDI--SNVSRLSKIIALQKL 278
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
DL CT + + L ++ LE L + C ITD + PLS L++L+ L +S C+ +TD
Sbjct: 279 DLSHCTGV-TDVSPLSKMIGLEKLYLSHCTGITD--VPPLSELSSLRMLNLSHCTGITD- 334
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
++ L L L+L C + LS L SL L+L+ C D S L++L
Sbjct: 335 -VSPLSEFSSLHTLDLSHC-TGITDVSPLSELSSLRTLDLSHCTGITD-VSPLSELSSLC 391
Query: 256 SLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGI 312
+L+L C GI D L L+ LC L ELS G + + LS L++L +++LS TGI
Sbjct: 392 TLDLSHCTGITDVSPLSKLSSLCTL---ELSHCT-GITDVSPLSELSSLRTLDLSHCTGI 447
Query: 313 SDGS-LRKLAGL--------------------SSLKSLNLD-ARQITD------------ 338
+D S L +L+GL SSL+ LNL ITD
Sbjct: 448 TDVSPLSELSGLRMLYLSHCPSITDVSPLSELSSLRMLNLSHCTGITDVSPLSEFSSLHI 507
Query: 339 ------TGLAALTSLTGLTHLDLFGAR----ITD-SGAAYLRNFKNLRSLEICGGGLTDA 387
TG+ ++ L+ L+ L + G ITD S + F+ L L C G +TD
Sbjct: 508 LGLSHCTGITDVSPLSKLSSLHILGLSHCTGITDVSPLTTIIGFEKLY-LSNCTG-ITD- 564
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
V + +LSSL L+LS +TD + +S L+ L +L S+ G+ + PL L
Sbjct: 565 -VSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLYFSH----CTGITDVSPLSEL 617
Query: 448 RSL 450
SL
Sbjct: 618 SSL 620
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L+ L+ + C I+D + L S+L L IT + + L +L L
Sbjct: 476 LSELSSLRMLNLSHCTGITD--VSPLSEFSSLHILGLSHCTGIT--DVSPLSKLSSLHIL 531
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
L CT I + L ++ E L + C ITD + PLS L++L++L +S C+ +TD
Sbjct: 532 GLSHCTGI-TDVSPLTTIIGFEKLYLSNCTGITD--VSPLSELSSLRTLDLSHCTGITD- 587
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
++ L L L L C + LS L SL L+L C G S L+ L
Sbjct: 588 -VSPLSKLSSLRTLYFSHC-TGITDVSPLSELSSLRTLDLLHCT----GITDVSPLSELS 641
Query: 256 SL 257
SL
Sbjct: 642 SL 643
>gi|290998998|ref|XP_002682067.1| predicted protein [Naegleria gruberi]
gi|284095693|gb|EFC49323.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 16/316 (5%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLV 149
++I + G++ + L L SL + + + + + L +LD+ R C R +GG
Sbjct: 114 LKIGEDGIKAISQLKQLKSLYLYAD--VDSNALNGVFEMTQLTELDINRKQCHRWNGGFK 171
Query: 150 NLKGLMKLESLNIKWCNCITDSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
LK L L+ L C CI D+ + +S L L L I+ + + G + L+ LT+
Sbjct: 172 KLKQLTNLKKLCAVGC-CIDYEDVFQSISQLDQLTELHIASNSLYSDGAKLIGKLKNLTI 230
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL-----NLDSCG 263
L++ C V + L ++ L +NL +++G ++ LE+L +L+
Sbjct: 231 LDISYCGVCIPHNEGLESISEL--INLTYLDCANNGLRSIGPISKLENLTFLRVSLNRIS 288
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
DE +V L L NL ++ + S + L S+ + I D S + ++ +
Sbjct: 289 SLDESIVKLKKLTNL---DVGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISEI 345
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
S LK+L +D+ ++D G +++++ LT LD+ I D GA L L++L I
Sbjct: 346 SQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQNN 405
Query: 384 LTDAGVKHIKDLSSLT 399
+++ G+ +K L T
Sbjct: 406 ISEEGMMTLKKLKYST 421
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 137/283 (48%), Gaps = 11/283 (3%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+ ++ L L IS K+ + GI + L++L L L V + L+ + + L L++
Sbjct: 100 FAKMSQLTKLDISGLKIGEDGIKAISQLKQLKSLYLYA-DVDSNALNGVFEMTQLTELDI 158
Query: 236 NR--CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG 292
NR C + G +K +LTNL+ L C I E + ++ L L L ++ + S G
Sbjct: 159 NRKQCHRWNGGFKKLKQLTNLKKLCAVGCCIDYEDVFQSISQLDQLTELHIASNSLYSDG 218
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL---TSLTG 349
+ + L NL +++S+ G+ L +S L +NL + GL ++ + L
Sbjct: 219 AKLIGKLKNLTILDISYCGVCIPHNEGLESISEL--INLTYLDCANNGLRSIGPISKLEN 276
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LT L + RI+ + ++ K L +L++ ++D + + LT L + +N N+
Sbjct: 277 LTFLRVSLNRISSLDESIVK-LKKLTNLDVGYNSISDQSAEVFSSMKQLTSLFIQEN-NI 334
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
DK+ + IS ++ L +L + ++ ++ G + + ++NL L +
Sbjct: 335 GDKSAKSISEISQLKNLCIDSNIVSDKGAKSISTMENLTELDI 377
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 30/263 (11%)
Query: 73 GLIHLKDCSNLQSL-DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G LK +NL+ L CI D + + L LT L +N++ + G K L
Sbjct: 169 GFKKLKQLTNLKKLCAVGCCIDYEDV-FQSISQLDQLTELHIA-SNSLYSDGAKLIGKLK 226
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISC 189
NL LD+ C L+ + +L +N+ + +C + + P+S L NL L++S
Sbjct: 227 NLTILDISYCGVCIPHNEGLESISEL--INLTYLDCANNGLRSIGPISKLENLTFLRVSL 284
Query: 190 SKVT--DSGIAYLKGL---------------------QKLTLLNLEGCPVTAACLDSLSA 226
++++ D I LK L ++LT L ++ + S+S
Sbjct: 285 NRISSLDESIVKLKKLTNLDVGYNSISDQSAEVFSSMKQLTSLFIQENNIGDKSAKSISE 344
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+ L L ++ +SD G + S + NL L++ + IGD+G +LT L LK L ++
Sbjct: 345 ISQLKNLCIDSNIVSDKGAKSISTMENLTELDIRNNDIGDDGAKSLTRLTKLKTLRIAQN 404
Query: 287 QVGSSGLRHLSGLTNLESINLSF 309
+ G+ L L ++ + F
Sbjct: 405 NISEEGMMTLKKLKYSTNVVIHF 427
>gi|300693896|ref|YP_003749869.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299075933|emb|CBJ35242.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum PSI07]
Length = 1002
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 177/372 (47%), Gaps = 11/372 (2%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT--RIHG-GLVNLKGLMKLESLNI 162
S L SLSF N +T +KA + LDL CT + G GL L G KLESL++
Sbjct: 553 SALESLSFHGN--LTIADLKALPPSVR--HLDLSGCTGTAVSGAGLAYLAG-RKLESLDL 607
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
I D + L+ T+L SL +S ++++D+G A LT LNL G ++ A +
Sbjct: 608 S-DTPIGDRGAQLLASSTSLTSLNLSGNEISDAGAAAFADNTSLTSLNLRGNHISDAGAE 666
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+L L L+++ + + G + + +L SLNL S I DEG+ L L+ L+
Sbjct: 667 ALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLD 726
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+S + G+ L+ L S+ + +++ ++LA + SL +L L + I D G+
Sbjct: 727 ISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQ 786
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A+ L LDL I G L + L SL++ G D G + SLTLL
Sbjct: 787 AIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLK 846
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
L N + + +++++ L+SL++S + I R L L SL SC + +
Sbjct: 847 LGSN-GIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAV 905
Query: 463 KRL-QSRDLPNL 473
L +SR L +L
Sbjct: 906 SALAESRSLTSL 917
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 176/379 (46%), Gaps = 8/379 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG + V+ +GL +L L+SLD + I D G + L ++LTSL+
Sbjct: 575 SVRHLDLSGCTGTAVSGAGLAYLAG-RKLESLDLSDT-PIGDRGAQLLASSTSLTSLNLS 632
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I+ G AFA +L L+L G L L SL++ N I ++ ++
Sbjct: 633 -GNEISDAGAAAFADNTSLTSLNLRGNHISDAGAEALGRNTVLTSLDVS-ANPIGNTGVQ 690
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ +L SL + + + D G+ L L L++ A L+ +L L
Sbjct: 691 ALASSRSLTSLNLCSTWIEDEGVEALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLK 750
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
N C L+++ ++ + + +L +L L S I D G+ + +L+ L+LS +G GL
Sbjct: 751 ANHCSLTNNVAQQLASIRSLTALELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLH 810
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ L S+++S G D L+ SL L L + I G+ L + L LD
Sbjct: 811 ALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLD 870
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L G I A L L SL GL DA V + + SLT L++S+N L
Sbjct: 871 LSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVSALAESRSLTSLDVSKN-RLFSPGA 929
Query: 415 ELISGLTGLVSLNVSNSRI 433
++G L SLN+S++RI
Sbjct: 930 RALAGNRVLTSLNISHNRI 948
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 164/377 (43%), Gaps = 31/377 (8%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
G L S+DLS + + D G L ++L SL+ + +ISD G ++LTSL+ R
Sbjct: 599 GRKLESLDLSDTPIGDRGAQLLASSTSLTSLNLSGN-EISDAGAAAFADNTSLTSLNLRG 657
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDM 173
N+ I+ G +A L LD+ + G+ L L SLN+ W I D +
Sbjct: 658 NH-ISDAGAEALGRNTVLTSLDVSANPIGNTGVQALASSRSLTSLNLCSTW---IEDEGV 713
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L+ T L+SL IS ++ A L + L L C +T L+++ SL L
Sbjct: 714 EALASNTVLRSLDISHNRFGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTAL 773
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDS------------------------CGIGDEGL 269
L+ + D G + R +L SL+L G GD G
Sbjct: 774 ELSSNLIDDAGVQAIVRNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGG 833
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ L+ +L L+L + S G++ L+ +L S++LS I + R LA L SL
Sbjct: 834 LVLSKSRSLTLLKLGSNGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASL 893
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
N + + D ++AL LT LD+ R+ GA L + L SL I + G
Sbjct: 894 NASSCGLDDAAVSALAESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHGA 953
Query: 390 KHIKDLSSLTLLNLSQN 406
+ + +SLT L+ N
Sbjct: 954 AALAESTSLTFLDARAN 970
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 29/307 (9%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+D+S + + ++G+ L +L SL N C I D G+E L + L SL N
Sbjct: 674 LTSLDVSANPIGNTGVQALASSRSLTSL--NLCSTWIEDEGVEALASNTVLRSLDISHNR 731
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP-- 175
AQ A L L C+ + L + L +L + N I D+ ++
Sbjct: 732 -FGAQFAAELAQNRTLASLKANHCSLTNNVAQQLASIRSLTALELS-SNLIDDAGVQAIV 789
Query: 176 ----------------LSGL------TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L GL L SL +SC D G L + LTLL L
Sbjct: 790 RNASLRSLDLSQNPIGLGGLHALALSRTLTSLDVSCIGCGDRGGLVLSKSRSLTLLKLGS 849
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + + L+A SL L+L+ + ++ L SLN SCG+ D + L
Sbjct: 850 NGIASEGVQILAANRSLISLDLSGNTIDVVAARALAKNPRLASLNASSCGLDDAAVSALA 909
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+L L++S ++ S G R L+G L S+N+S I LA +SL L+ A
Sbjct: 910 ESRSLTSLDVSKNRLFSPGARALAGNRVLTSLNISHNRIGFHGAAALAESTSLTFLDARA 969
Query: 334 RQITDTG 340
I + G
Sbjct: 970 NGIGEAG 976
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 126/291 (43%), Gaps = 36/291 (12%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL--ES 256
+LKG TL +L+ P T L +L+L+ C S + + L +L ES
Sbjct: 112 HLKG--NFTLADLKALPAT------------LLHLDLSECTGSARSSKAIAYLASLPLES 157
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
LN+ IGD G L +LK L ++ +G++G +L+ L S++L+ I D
Sbjct: 158 LNVKGAQIGDHGARLLAANPSLKTLNMAIGGIGAAGAANLAESRTLMSLDLTQNKIGDKG 217
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL------------------FGA 358
++ LA SL +L + +TD GL AL LT LDL
Sbjct: 218 VQALAASRSLTNLTVSNCLVTDIGLEALARSRTLTSLDLGNLVSATYDEAEQADFDRTAN 277
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
IT G L +L SL + G DAGV + +LT LN++ N+ + ++
Sbjct: 278 DITVKGTRALVQSPSLTSLSVQGNLCGDAGVLELAKSRTLTHLNVAF-TNMGPVSARALA 336
Query: 419 GLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
L SLNV N I + G L ++L SL + A + L+++
Sbjct: 337 RNPVLTSLNVRWNYDIGTEGALELTKSESLISLDARDASIGAEGVLALEAK 387
>gi|72385483|ref|XP_846409.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|9366582|emb|CAB95344.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1449
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 202/466 (43%), Gaps = 69/466 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 611 ALNELNLNNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSKCKNLVTLDLSFC 668
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 669 NKLLD-----VTTLSNITTLE----------------------ELNLDSCSNIRKGLSVL 701
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LNIK +C D+ PLS L L+ L +
Sbjct: 702 GELPRLCVLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNLVTLEELNLHY 761
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
C KVT SG+ L L +L +L+L V L+++ ++ L LNL+ C+
Sbjct: 762 CDKVT-SGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHCK-KITSISA 819
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT LE LN+D+C G L L+ LS+T++ +R++S +L ++NL
Sbjct: 820 IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNL 879
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA- 365
+F I+D + L+ ++ L+ LNLD G+ L L L + + DS A
Sbjct: 880 AFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQ 937
Query: 366 --AYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
+ L N K+L +LE G ++ + +I L L L + + C + S L
Sbjct: 938 QCSILGNSKSLVKLNLERSMGFISVKALSNIATLEELVLDHAREVCCIPS-----FSCLP 992
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L LN+ + I +++ K+LR L L CK DI L S
Sbjct: 993 RLRVLNLKYTDINGDVTKNISESKSLRLLNLSHCKWVT-DISVLSS 1037
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 130/471 (27%), Positives = 193/471 (40%), Gaps = 106/471 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 855 LSNTRINDENVRYVSECKSLNTLNLAFCKDITD--------------------------- 887
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 888 VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECY-MGDSDAQQCSILGNSK 946
Query: 184 SLQ----------ISCSKVTDSG---------------IAYLKGLQKLTLLNLEGCPVTA 218
SL IS +++ I L +L +LNL+ +
Sbjct: 947 SLVKLNLERSMGFISVKALSNIATLEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDING 1006
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GI--GDEGL------ 269
++S SL LNL+ C+ D S L+ LE LN+ SC GI G E L
Sbjct: 1007 DVTKNISESKSLRLLNLSHCKWVTD-ISVLSSLSTLEELNVSSCYGIKKGWESLGKLPLL 1065
Query: 270 -------VNLTG-----------LCNLK---CLELSDTQV-----------------GSS 291
N+T L L+ C ELSD V G
Sbjct: 1066 RVAILSDTNITAKDIACLSSCKTLVKLQFSWCEELSDVTVVYEIQSLEELIVKKYSDGLK 1125
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGL 350
GL L L L ++L SD S+ + SL LN++ R ++TD + L+++T L
Sbjct: 1126 GLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRLNIEMRGELTD--ITPLSNITSL 1183
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L+ R T GA L LRSL++ ++D+ + +I +T LNL+ + LT
Sbjct: 1184 EELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLT 1243
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
D + IS LT L LN+ ++G L L LR L LES VT D
Sbjct: 1244 D--ISGISKLTALEELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRD 1292
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 172/412 (41%), Gaps = 76/412 (18%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
++A A ++ L KL L CT I G+ L L +L+ L++ N +S ++ L +
Sbjct: 532 VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNES-LRSLCLSQTMV 590
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL +S C K+T+ ++++ L+ L LNL C A +++ L L L+ ++D
Sbjct: 591 SLNLSHCWKMTN--VSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITD 648
Query: 243 DGCEKFSR-----------------------LTNLESLNLDSCGIGDEGLV---NLTGLC 276
FS+ +T LE LNLDSC +GL L LC
Sbjct: 649 RDISHFSKCKNLVTLDLSFCNKLLDVTTLSNITTLEELNLDSCSNIRKGLSVLGELPRLC 708
Query: 277 --NLKCLELSDTQVGSSG---------LRH---------LSGLTNLESINLSFTGISDGS 316
N+K +EL D+ +GS G L H LS L LE +NL +
Sbjct: 709 VLNIKGVELEDSVIGSLGNGNSFVRLSLEHCKGFGDVTPLSNLVTLEELNLHYCDKVTSG 768
Query: 317 LRKLAGLSSLKSLNLDARQITD------------------------TGLAALTSLTGLTH 352
+ L L L+ L+L Q+ + T ++A+ SLT L
Sbjct: 769 MGTLGRLLQLRVLDLGRTQVDNNSLENICTSSIPLVLLNLSHCKKITSISAIASLTALEE 828
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ SG LR + + D V+++ + SL LNL+ ++TD
Sbjct: 829 LNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENVRYVSECKSLNTLNLAFCKDITDV 888
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
T +S +T L LN+ G+ L L R L+++ C + +D ++
Sbjct: 889 T--ALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYMGDSDAQQ 938
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 158/359 (44%), Gaps = 55/359 (15%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L G
Sbjct: 303 VKLSKLSVSECNNITDA--TPISQLAALEELNVNSCYHIT-KGIGTLGMLLRLRMLDLSG 359
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-----GIGDE 267
PV CL L GSL LNL+ C QL+D S T +E LNL+ C GIG
Sbjct: 360 VPVEDNCLKDLCDCGSLERLNLSYCIQLTD--INPLSSATAIEELNLNGCRRITRGIGVV 417
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSF 309
+ + ++K ++L D+ +GS G + LS + LE +N+
Sbjct: 418 WALPKLRVLHMKDVQLEDSVIGSLGNGNSFVRLSLENCAGFGDMTLLSSIVTLEELNIQK 477
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLT------- 351
+ L L L+ LN+ I+ TG+ A L S+TGL
Sbjct: 478 CADIISGVGCLGTLPYLRVLNVKEVHISSLDFTGIGASKSLLQLTLESITGLIDVEALAN 537
Query: 352 -----HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 538 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNLSHC 597
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN++N +AG ++ L+ L L + +T DI
Sbjct: 598 WKMTN--VSHISSLEALNELNLNNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 654
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 186/418 (44%), Gaps = 38/418 (9%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++L +D+ ++ + +L+ L+ + C ++D + L LS L L N +
Sbjct: 997 LNLKYTDINGDVTKNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEEL-----NVSSC 1049
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES------LNIKWCNCITDSDMKP 175
G+K G +L KL L R + + K + L S L WC + SD+
Sbjct: 1050 YGIKK--GWESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLQFSWCEEL--SDVTV 1105
Query: 176 LSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ + +L+ L + K +D G+ L L +L L+L + ++S+ SL L
Sbjct: 1106 VYEIQSLEELIVK--KYSDGLKGLNALGTLPRLRFLHLRNVRGSDISVESIGTSKSLVRL 1163
Query: 234 NLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
N+ R +L+D S +T+LE L+L C EG L L L+ L+L + + S
Sbjct: 1164 NIEMRGELTD--ITPLSNITSLEELSLWECRDTLEGAWTLERLPRLRSLDLGLSDISDST 1221
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLS---SLKSLNLDARQITDTGLAALTSLTG 349
L ++ + S+NL+ S L ++G+S +L+ LNL +G AL+ L
Sbjct: 1222 LYYICLSRFITSLNLT----SSWKLTDISGISKLTALEELNLRGCHRITSGWEALSELPR 1277
Query: 350 LTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNC 407
L L+L +T G Y+ K+L +L I +TDA + +IK L L + C
Sbjct: 1278 LRVLNLESTSVTTRDGGYYISRCKSLVTLNIQLSDMTDASCLANIKTLEELHI----GEC 1333
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ + + L L LN+ S IT LR ++P + L L CK NDI L
Sbjct: 1334 DELTQGFSALFTLPRLRILNLMGSLITDEDLREIQPPHTIEELNLSYCK-NLNDITPL 1390
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 29/204 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+DL SD++DS L ++ + SL+ +++D + G+S LT+L
Sbjct: 1207 LRSLDLGLSDISDSTLYYICLSRFITSLNLTSSWKLTD-----ISGISKLTALE------ 1255
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+L+L C RI G L L +L LN++ + T +S
Sbjct: 1256 ----------------ELNLRGCHRITSGWEALSELPRLRVLNLESTSVTTRDGGYYISR 1299
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L +L I S +TD+ + L ++ L L++ C +L L L LNL
Sbjct: 1300 CKSLVTLNIQLSDMTDA--SCLANIKTLEELHIGECDELTQGFSALFTLPRLRILNLMGS 1357
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC 262
++D+ + +E LNL C
Sbjct: 1358 LITDEDLREIQPPHTIEELNLSYC 1381
>gi|443729605|gb|ELU15470.1| hypothetical protein CAPTEDRAFT_224593 [Capitella teleta]
Length = 858
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 192/412 (46%), Gaps = 44/412 (10%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++++ + +L+ + L +L F LQ L L YP ++ + I + L
Sbjct: 444 LPANVAEGLLKQLMKEKLLRPKTLHPFIPSHLQTLLLDYYPYATNELLHEIRLH-NCLAH 502
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+ L S +TD GL + L+ L+ C Q++D L +R L NL L + ++
Sbjct: 503 LSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILE-STGVS 561
Query: 121 AQGMKAF--AGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
+GM+ L +LV LDL + T++ + NL K KL LN++ S++ LS
Sbjct: 562 DRGMQELFHQPLTSLVNLDLSK-TQVTHRIFNLAKNAPKLSHLNLE------QSEVASLS 614
Query: 178 GLTNL--KSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
G+ L +SL +S +K VTDS LL L GC + A + + +
Sbjct: 615 GVKELCLQSLNLSHTKIVTDS------------LLCLSGCDIRALNISNTPNIEG----- 657
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGL 293
D G E L L+ L+L S + + T L L+L++ VG G+
Sbjct: 658 -------DLGLEYLQSLKLLQHLSLPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGM 710
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
RH+ +T+L + L T I+DG L L GL +L+ ++LD ITD G + + T L L
Sbjct: 711 RHIGKITSLRRLLLCNTKITDGGLLFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQL 770
Query: 354 DLFGARITDSGAAY--LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L I+++ + L L L + ++D GV+ ++ L +LTLLNL
Sbjct: 771 SLTETGISNAFLEHQSLNPCYLLSKLNLSRTAISDKGVRCLR-LPNLTLLNL 821
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 20/336 (5%)
Query: 133 LVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L L L+ C+ I GL ++ L +L+ LN+ C +TD+ + + L NL+ L + +
Sbjct: 500 LAHLSLKACSLITDRGLQDISSLKRLKVLNLAACTQLTDNCLPLVRELPNLQVLILESTG 559
Query: 192 VTDSGIAYL--KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF 248
V+D G+ L + L L L+L VT + L +LNL + +++ G ++
Sbjct: 560 VSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHLNLEQSEVASLSGVKEL 619
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--VGSSGLRHLSGLTNLESIN 306
L+SLNL I + L+ L+G C+++ L +S+T G GL +L L L+ ++
Sbjct: 620 C----LQSLNLSHTKIVTDSLLCLSG-CDIRALNISNTPNIEGDLGLEYLQSLKLLQHLS 674
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
L + L L+L + + D G+ + +T L L L +ITD G
Sbjct: 675 LPSRLSLSDHGLQFTTAMPLVLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKITDGGL 734
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ----NCNLTDKTLELISGLT 421
+LR NL + + +TD G ++ + L L+L++ N L ++L L+
Sbjct: 735 LFLRGLVNLEEISLDRTAITDEGACVVEAFTRLQQLSLTETGISNAFLEHQSLNPCYLLS 794
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
LN+S + I+ G+R L+ L NL L L+ ++
Sbjct: 795 ---KLNLSRTAISDKGVRCLR-LPNLTLLNLDHTRI 826
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 118/276 (42%), Gaps = 57/276 (20%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+CS +TD G+ + L++L +LNL C QL+D+
Sbjct: 507 ACSLITDRGLQDISSLKRLKVLNLAAC-----------------------TQLTDNCLPL 543
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNL--TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
L NL+ L L+S G+ D G+ L L +L L+LS TQV L +
Sbjct: 544 VRELPNLQVLILESTGVSDRGMQELFHQPLTSLVNLDLSKTQVTHRIFNLAKNAPKLSHL 603
Query: 306 NLSFTGISDGSLRKLAGLSSL--KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
NL + ++ L+G+ L +SLNL +I L L+ D
Sbjct: 604 NLEQSEVAS-----LSGVKELCLQSLNLSHTKIVTDSLLCLSG--------------CDI 644
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
A + N N+ D G+++++ L L L+L +L+D L+ + + L
Sbjct: 645 RALNISNTPNIEG---------DLGLEYLQSLKLLQHLSLPSRLSLSDHGLQFTTAMP-L 694
Query: 424 VSLNVSNS-RITSAGLRHLKPLKNLRSLTLESCKVT 458
V L+++N + G+RH+ + +LR L L + K+T
Sbjct: 695 VLLDLTNYLNVGDDGMRHIGKITSLRRLLLCNTKIT 730
>gi|320165520|gb|EFW42419.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 694
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 1/270 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT + LT L L ++ +++TD GL LT+L L G +T + +
Sbjct: 77 NQITSIPASAFANLTALTELDLTVNQITDISANAFAGLAALTMLFLPGNNITGIPANVFA 136
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L +L LNL+ QL+ + F+ LT L++LNL S I L LK L LS
Sbjct: 137 GLTALLVLNLSGNQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGLSG 196
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++GS+ + + L I+LS I+ GL++L +L L IT A+T
Sbjct: 197 NRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANAVT 256
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT L +LD+ G + T A+ L L + T L++LT L LS
Sbjct: 257 GLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSN 316
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITS 435
N TD + +GL L+ L ++ +++TS
Sbjct: 317 N-QFTDISANAFAGLPALMELGLAGNQLTS 345
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 151/374 (40%), Gaps = 51/374 (13%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS N IT+ AFA L L +LDL N I
Sbjct: 70 TSLSLSINQ-ITSIPASAFANLTALTELDLT-------------------------VNQI 103
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
TD +GL L L + + +T GL L +LNL G + + D+ + L
Sbjct: 104 TDISANAFAGLAALTMLFLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFTGLT 163
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE-----------GLVNL----- 272
+L LNL Q++ F+ L L+SL L +G G ++L
Sbjct: 164 ALQTLNLQSNQITSISAAGFADLAALKSLGLSGNRLGSNLANAFTNQSALGFIDLSNNQI 223
Query: 273 --------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
TGL L L LS+ + S ++GLT L+ +++S + AGL+
Sbjct: 224 TSLLADAFTGLAALNTLFLSNNNITSIPANAVTGLTALKYLDVSGNQFTSFPASSFAGLT 283
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L+L Q T A T LT LT L L + TD A L L + G L
Sbjct: 284 ALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAGLPALMELGLAGNQL 343
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T + DL+ L L+LS N +T +GLT L SL +S +++TS L
Sbjct: 344 TSIPTSALLDLTLLNFLSLSAN-QITSIPASAFTGLTALFSLILSRNQLTSIPAAAFSGL 402
Query: 445 KNLRSLTLESCKVT 458
L L+L++ T
Sbjct: 403 TLLNILSLDTNPFT 416
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 141/330 (42%), Gaps = 5/330 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL- 151
QI+ L+ LT L N IT AFAGL L L L I G N+
Sbjct: 78 QITSIPASAFANLTALTELDLTVNQ-ITDISANAFAGLAALTMLFLPG-NNITGIPANVF 135
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
GL L LN+ N + +GLT L++L + +++T A L L L L
Sbjct: 136 AGLTALLVLNLSG-NQLASIPADAFTGLTALQTLNLQSNQITSISAAGFADLAALKSLGL 194
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G + + ++ + +L +++L+ Q++ + F+ L L +L L + I
Sbjct: 195 SGNRLGSNLANAFTNQSALGFIDLSNNQITSLLADAFTGLAALNTLFLSNNNITSIPANA 254
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+TGL LK L++S Q S +GLT L ++LS + S GL++L SL L
Sbjct: 255 VTGLTALKYLDVSGNQFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQL 314
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
Q TD A L L L L G ++T + L + L L + +T
Sbjct: 315 SNNQFTDISANAFAGLPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASA 374
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
L++L L LS+N LT SGLT
Sbjct: 375 FTGLTALFSLILSRN-QLTSIPAAAFSGLT 403
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 134/327 (40%), Gaps = 22/327 (6%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLK 78
+T++S AF L L + PG N + G ++LL ++LSG+ +
Sbjct: 103 ITDISANAF--AGLAALTMLFLPGNNITGIPANVFAGLTALLVLNLSGNQLASIPADAFT 160
Query: 79 DCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRR-----NNAITAQGMKAFAGLI 131
+ LQ+L+ N IS G L L +L LS R NA T Q F L
Sbjct: 161 GLTALQTLNLQSNQITSISAAGFADLAALKSL-GLSGNRLGSNLANAFTNQSALGFIDLS 219
Query: 132 NLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
N +I L + GL L +L + N IT ++GLT LK L +S +
Sbjct: 220 N---------NQITSLLADAFTGLAALNTLFLSNNN-ITSIPANAVTGLTALKYLDVSGN 269
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+ T + GL LT L+L T+ + + L +L L L+ Q +D F+
Sbjct: 270 QFTSFPASSFAGLTALTYLSLSNNQATSISAWAFTGLTALTSLQLSNNQFTDISANAFAG 329
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L L L L + L L L L LS Q+ S +GLT L S+ LS
Sbjct: 330 LPALMELGLAGNQLTSIPTSALLDLTLLNFLSLSANQITSIPASAFTGLTALFSLILSRN 389
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQIT 337
++ +GL+ L L+LD T
Sbjct: 390 QLTSIPAAAFSGLTLLNILSLDTNPFT 416
>gi|395539122|ref|XP_003771522.1| PREDICTED: F-box/LRR-repeat protein 13, partial [Sarcophilus
harrisii]
Length = 509
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 188/421 (44%), Gaps = 76/421 (18%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFC 91
LQ+L + Q G+ND M + SL+ ++++ +D+++ L L C NLQ L +C
Sbjct: 83 LQELNVSQCEGLNDDAMRYVLEGCPSLIHLNIAHTDISNGTLKLLSRCFPNLQKLSLAYC 142
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL------ 138
++ GL +L +G +T+L I+ QG K A G+ +LV D+
Sbjct: 143 RNFTEKGLLYLNLGKGCHKITNLDLSGCTQISVQGFKDIASSCTGIKHLVINDMPTLTDN 202
Query: 139 ------ERCTRIHGGL----------------------VNLKGLMKLESLNIKW------ 164
ERC I + V ++G ++ L K
Sbjct: 203 CIKALVERCKSITSVIFIGSPHLSDTAFKYLTDCSLNKVRVEGNNRITDLTFKLMDKHYG 262
Query: 165 ---------CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI-AYLKGL--QKLTLLNL 211
C ITD +K ++ L NL L ++ C ++ D G+ ++L G KL LNL
Sbjct: 263 DLSHIYMTDCERITDVSLKSIANLKNLVVLNLANCIRIGDVGLRSFLGGPSSSKLRELNL 322
Query: 212 EGCPVTAACLDSLSALG----SLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGD 266
C + SL+ +G SL YLNL C QL+D G E ++L NL S++L I D
Sbjct: 323 THCAQISDL--SLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITD 380
Query: 267 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN-LESINLSFTGISDGSLRKLAGLS 324
E L +L+ LK L +S+ + + SG++H T LE +++SF G + K
Sbjct: 381 EALTSLSNHKKLKELSVSECEFITDSGVKHFCQSTPILEHLDVSFCLKLSGEILKALSTK 440
Query: 325 SLKSLNLD---ARQITDTGLAALTSLTGLTH-LDLFG-ARITDSGAAY-LRNFKNLRSLE 378
L+ +L ++ D + L+ H LD+ G R+TD Y L+ K LR L+
Sbjct: 441 CLRLTSLSIAGCPKMNDLAIRILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILK 500
Query: 379 I 379
+
Sbjct: 501 M 501
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 170/385 (44%), Gaps = 48/385 (12%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESL 160
R N+ L+F +++ K NL +L++ +C ++ + L+G L L
Sbjct: 53 RWRPNVLRLNFHGCSSLQWPSFKLINQCKNLQELNVSQCEGLNDDAMRYVLEGCPSLIHL 112
Query: 161 NIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCP 215
NI + I++ +K LS NL+ L ++ C T+ G+ YL KG K+T L+L GC
Sbjct: 113 NIAHTD-ISNGTLKLLSRCFPNLQKLSLAYCRNFTEKGLLYLNLGKGCHKITNLDLSGCT 171
Query: 216 VTAA--CLDSLSALGSLFYLNLNRCQLSDDGCEK--FSRLTNLES-LNLDSCGIGDEGLV 270
+ D S+ + +L +N D C K R ++ S + + S + D
Sbjct: 172 QISVQGFKDIASSCTGIKHLVINDMPTLTDNCIKALVERCKSITSVIFIGSPHLSDTAFK 231
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
LT C+L +V G ++ LT + ++ + +S +
Sbjct: 232 YLTD-CSL-------NKVRVEGNNRITDLT-FKLMDKHYGDLSHIYMT------------ 270
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICG-G 382
D +ITD L ++ +L L L+L RI D G LR+F LR L +
Sbjct: 271 -DCERITDVSLKSIANLKNLVVLNLANCIRIGDVG---LRSFLGGPSSSKLRELNLTHCA 326
Query: 383 GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
++D + + + SLT LNL LTD +E I+ L L+S+++S + IT L L
Sbjct: 327 QISDLSLAEMGERCRSLTYLNLRSCTQLTDCGIEFITKLPNLISIDLSVTAITDEALTSL 386
Query: 442 KPLKNLRSLTLESCK-VTANDIKRL 465
K L+ L++ C+ +T + +K
Sbjct: 387 SNHKKLKELSVSECEFITDSGVKHF 411
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L+S+DLS + +TD L L + L+ L + C I+D G++H F ++
Sbjct: 367 NLISIDLSVTAITDEALTSLSNHKKLKELSVSECEFITDSGVKH-----------FCQST 415
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLESLNIKWCNCITDSDM 173
I L LD+ C ++ G + LK L ++L SL+I C + D +
Sbjct: 416 PI-------------LEHLDVSFCLKLSGEI--LKALSTKCLRLTSLSIAGCPKMNDLAI 460
Query: 174 KPLSGLTN-LKSLQIS-CSKVTDSGIAY-LKGLQKLTLLNLEGC 214
+ LS + L L +S C ++TD I Y L+G ++L +L + C
Sbjct: 461 RILSKKCHYLHILDVSGCVRLTDKAIEYLLQGCKQLRILKMRYC 504
>gi|390335362|ref|XP_003724129.1| PREDICTED: uncharacterized protein LOC100890653 [Strongylocentrotus
purpuratus]
Length = 990
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 36/318 (11%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKL 206
L ++ + L SLN+ C ITD + ++ L L+ L +S +K +TD ++ L
Sbjct: 636 LQTVRPHIHLSSLNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSL 695
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T L LEG VT A L++ A+ NL +L+L+ + D
Sbjct: 696 TTLLLEGTGVTDAGLETFVAVPP----------------------PNLTNLSLNRTNVTD 733
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
++ L L LK L L TQV S L H+ L+ L S+N+S + +L KL ++ L
Sbjct: 734 MAVLFLARLSKLKNLGLEQTQVKS--LEHVGHLSQLVSLNVSRNRLQRDALLKLHQVTHL 791
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG----- 381
K L++ + TG ALT L GL L + D K + + +C
Sbjct: 792 KVLHISHVEGI-TGDEALTCLQGL---QLMQLSLPDRHTTTDNGLKCIAGMSLCSIDLTD 847
Query: 382 -GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+TDAG+ H+ D++SL L+++ N +T ++ +SGLT L+ L++ + + G +
Sbjct: 848 YSNITDAGIHHLADMTSLHKLSIT-NTKVTSAGMQYLSGLTELLELHLDRTLVDDEGAKV 906
Query: 441 LKPLKNLRSLTLESCKVT 458
+ L L+ L++ K+T
Sbjct: 907 IGQLTKLQVLSMAETKIT 924
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 185/379 (48%), Gaps = 22/379 (5%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+P +++++ EL S L +L F C LQ L L Y ++ + + L S
Sbjct: 589 VPPTVAERLLTELKKSGHLRPKTLMMFIPCHLQRLALDCYKYTTNELLQTVRPH-IHLSS 647
Query: 62 VDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
++L+ +TD GL+ + LQ L+ + ++D + ++ S+LT+L +T
Sbjct: 648 LNLASCPLITDQGLLQITSLKKLQHLNLSNNKSLTDKVFQTVQEFSSLTTL-LLEGTGVT 706
Query: 121 AQGMKAFAGLI--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
G++ F + NL L L R ++ L L KL++L ++ ++ +
Sbjct: 707 DAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLEQTQV---KSLEHVGH 763
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL---EGCPVTAA--CLDSLSALGSLFYL 233
L+ L SL +S +++ + L + L +L++ EG A CL L L L
Sbjct: 764 LSQLVSLNVSRNRLQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGLQ----LMQL 819
Query: 234 NL-NRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L +R +D+G + + ++ L S++L D I D G+ +L + +L L +++T+V S+
Sbjct: 820 SLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTSA 878
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA--LTSLTG 349
G+++LSGLT L ++L T + D + + L+ L+ L++ +ITD L + + S
Sbjct: 879 GMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCPH 938
Query: 350 LTHLDLFGARITDSGAAYL 368
++ L+L I++ G L
Sbjct: 939 ISRLNLSRTNISERGITVL 957
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 142/277 (51%), Gaps = 13/277 (4%)
Query: 43 GVNDKWMDV-IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
GV D ++ +A +L ++ L+ ++VTD ++ L S L++L Q LEH
Sbjct: 704 GVTDAGLETFVAVPPPNLTNLSLNRTNVTDMAVLFLARLSKLKNLGLE---QTQVKSLEH 760
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLES 159
+ LS L SL+ RN + + + +L L + I G L L+GL +L
Sbjct: 761 VGHLSQLVSLNVSRNR-LQRDALLKLHQVTHLKVLHISHVEGITGDEALTCLQGL-QLMQ 818
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L++ + TD+ +K ++G++ L S+ ++ S +TD+GI +L + L L++ VT+
Sbjct: 819 LSLPDRHTTTDNGLKCIAGMS-LCSIDLTDYSNITDAGIHHLADMTSLHKLSITNTKVTS 877
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV-NLTGLC- 276
A + LS L L L+L+R + D+G + +LT L+ L++ I D L+ N+ C
Sbjct: 878 AGMQYLSGLTELLELHLDRTLVDDEGAKVIGQLTKLQVLSMAETKITDRFLLSNVINSCP 937
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
++ L LS T + G+ LS L L +NL +T +S
Sbjct: 938 HISRLNLSRTNISERGITVLS-LPYLTLLNLDYTCVS 973
>gi|300704109|ref|YP_003745711.1| leucine-rich-repeat type III effector protein (gala5) [Ralstonia
solanacearum CFBP2957]
gi|299071772|emb|CBJ43096.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum CFBP2957]
Length = 535
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 173/364 (47%), Gaps = 13/364 (3%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES------LNIKWCNCITDSDMKP 175
QG+ AG+ +L +L L R + G + L G+ +L + L++ C I + +
Sbjct: 152 QGLITAAGIAHLSRLPLVRLN-LSGNRIGLAGVQRLANHPTLTELDVSRCG-IGPEEARA 209
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+ L +L S + V G+ L G + LT L+L + A L + L LN+
Sbjct: 210 LAASARLTTLNASHNGVGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNV 269
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
NR ++ G + L SL++ IGD G+ L L L + ++G+ G++
Sbjct: 270 NRNRIDVQGARALAACKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQA 329
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ L S+ + I D LA +SL +L+ ++ I TG AL + T LT L+L
Sbjct: 330 LADCKTLTSLRIDNNNIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNL 389
Query: 356 FGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
I D+GA A+L N L L + GL+DA + +LT L+ S N + D
Sbjct: 390 GHNSIGDAGAQAWLAN-TTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNA-IKDAGA 447
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL 473
++ L +LNVS++ I +AG R L L+SL L + ++ ++ L +R L +L
Sbjct: 448 RALAANRTLTALNVSSNEIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSL 507
Query: 474 -VSF 476
VSF
Sbjct: 508 GVSF 511
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 163/349 (46%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + +G+ L + L LD + C I L + LT+L+ +N
Sbjct: 168 LVRLNLSGNRIGLAGVQRLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNAS-HNG 225
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ ++G++A G L LDL L +L +LN+ N I + L+
Sbjct: 226 VGSEGVQALVGCKTLTSLDLSDNGLGDAEAQRLGSSERLTTLNVNR-NRIDVQGARALAA 284
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E + A + +L+ +L L ++
Sbjct: 285 CKTLTSLDIGGNSIGDAGVNALVANAQLTTLNVERAEIGAHGVQALADCKTLTSLRIDNN 344
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 345 NIGDEGANTLAASTSLTTLHSESNGIGPTGAQALAANTRLTTLNLGHNSIGDAGAQAWLA 404
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +++ G+SD +LA +L +L+ I D G AL + LT L++
Sbjct: 405 NTTLVWLSVRRNGLSDACAIRLAASKTLTTLDASDNAIKDAGARALAANRTLTALNVSSN 464
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L+SL++ + +AGV+ + +L+ L +S NC
Sbjct: 465 EIGNAGARALAANTMLKSLDLRNNRMLEAGVRALLANRTLSSLGVSFNC 513
>gi|357150706|ref|XP_003575549.1| PREDICTED: F-box/LRR-repeat protein 3-like [Brachypodium
distachyon]
Length = 666
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 131/475 (27%), Positives = 221/475 (46%), Gaps = 48/475 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLDFNF 90
A++ +CL + GV + +D + + L +VDLS D L + L+ L+
Sbjct: 110 AVRQVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAAAGLRELNLEK 169
Query: 91 CIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLERCTRIHGGL 148
C+ ++D GL + G L LSF+ I+ G+ L LD+ + L
Sbjct: 170 CLGVTDMGLAKVAVGCPKLEKLSFKWCREISDIGVDLLVKKCRELRNLDISYLEVSNESL 229
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIA-------Y 199
++ L KLE L++ C CI D ++ LS G +L+S+ +S C VT G+A +
Sbjct: 230 RSISTLEKLEELSMVGCLCIDDKGLELLSRGSNSLQSVDVSRCDHVTSEGLASLIDGHSF 289
Query: 200 LKGL---------------------QKLTLLNLEGCPVTAACLDSLS-ALGSLFYLNLNR 237
L+ L + LT+L L+G V+++ L +++ +L + L++
Sbjct: 290 LQKLNAADSLHEIGQNFLSKLATLKETLTMLRLDGFEVSSSLLLAIAEGCNNLVEVGLSK 349
Query: 238 CQ-LSDDGCEKF-SRLTNLESLNLDSCG-IGDEGLVNLTGLCNL--KCLELSDTQVGSSG 292
C ++D+G +R L ++L C + D LV++ C + L S + + G
Sbjct: 350 CNGVTDEGISSLVARCGYLRKIDLTCCNLLTDNALVSIADNCKMLECLLLESCSSLSEKG 409
Query: 293 LRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LTG 349
L ++ NL I+L+ G++D +L+ LA S L L L I+D GL ++S
Sbjct: 410 LERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKCVK 469
Query: 350 LTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQN 406
LT +DL+ ITD G A L + K ++ L +C +TD G+ H+ L LT L L
Sbjct: 470 LTEVDLYRCNSITDDGLATLAKGCKKIKMLNLCYCNKITDGGLSHLGSLEELTNLELRCL 529
Query: 407 CNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G LV +++ + +GL L NLR LT+ C+VT
Sbjct: 530 VRITGIGISSVAIGCKSLVEIDLKRCYSVDDSGLWALARYALNLRQLTISYCQVT 584
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 61/287 (21%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-L 105
K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 408 KGLERIATCCPNLSEIDLTDCGVNDAALQHLAKCSELLILKLGLCSSISDKGLGFISSKC 467
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT + R N+IT G+ A KG K++ LN+ +C
Sbjct: 468 VKLTEVDLYRCNSITDDGLATLA-----------------------KGCKKIKMLNLCYC 504
Query: 166 NCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N ITD + L L L +L++ C ++T GI+ V C
Sbjct: 505 NKITDGGLSHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC---- 544
Query: 225 SALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
SL ++L RC DD G +R NL L + C + GL +L L +L+CL+
Sbjct: 545 ---KSLVEIDLKRCYSVDDSGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLRCLQ 599
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
D + + HLS ++ +E ++ G L+KL LSSLKS+
Sbjct: 600 --DVK-----MVHLSWVS-IEGFEMALRAAC-GRLKKLKMLSSLKSV 637
>gi|270010132|gb|EFA06580.1| hypothetical protein TcasGA2_TC009492 [Tribolium castaneum]
Length = 474
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 162/317 (51%), Gaps = 37/317 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN++ C + D + ++ L L +S C +VTD+ + + + L+ L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IG 265
+L L GC L A G L L+ LNL SC +G
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWG----------------------LKKLKRLNLRSCWHVG 271
Query: 266 DEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 322
D+G+ +L +G +L+ L L D Q + L+H +GLT+L SINLSF I+D L+ LA
Sbjct: 272 DQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAK 331
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ + NLR+L
Sbjct: 332 MTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLL 391
Query: 379 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITS 435
+ L+D G+ I + L L LN+ Q +TDK L I+ L L +++ +RIT+
Sbjct: 392 MSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITT 451
Query: 436 AGLRHLKPLKNLRSLTL 452
GL + L L L L
Sbjct: 452 VGLERIMKLPQLSVLNL 468
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 152/295 (51%), Gaps = 17/295 (5%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGM-KAF-AGLINLVKLDLERCTRI-HGGLVNLKGLMK-L 157
++G+ NL SL+ R + G+ AF A L +LDL C ++ L + +K L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 233
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
E L + C+ +T+S + ++ GL LK L + SC V D GI +L G L L L+ C
Sbjct: 234 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 293
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
++ L + L SL +NL+ C ++D G + +++TNL LNL SC I D G+
Sbjct: 294 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 353
Query: 272 LT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLK 327
L G + L++S ++G L H+S GL NL ++ +S +SD L K+A L L+
Sbjct: 354 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 413
Query: 328 SLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
+LN+ ++TD GL + SL L +DL+G RIT G + L L +
Sbjct: 414 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 468
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 270 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 329
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 330 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 389
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 390 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 449
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 450 TTVGLERIMKLPQLSVLNL 468
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 296 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 347
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 174 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 230
Query: 348 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 399
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 231 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 286
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 287 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 343
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 24/234 (10%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ NLESLNL C +GD G+ + LT L C +++DT + R L N
Sbjct: 177 IPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQHLKN 232
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDLFG 357
LE + L + +++ L +A GL LK LNL + + D G+ L S L HL L
Sbjct: 233 LEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQD 292
Query: 358 -ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+++D + +L S L C +TD+G+KH+ +++L LNL N++D +
Sbjct: 293 CQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISDTGM 351
Query: 415 ELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 352 AFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 405
>gi|224144082|ref|XP_002325179.1| predicted protein [Populus trichocarpa]
gi|222866613|gb|EEF03744.1| predicted protein [Populus trichocarpa]
Length = 66
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
+GLT LVSLNVSNS IT GLR+LKPLKNLRS++LESCKVTA+ IK+LQS +LPNLVS
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQSTELPNLVS 66
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+GLT L SL +S S +T G+ YLK L+ L ++LE C VTA+ + L +
Sbjct: 9 TGLTELVSLNVSNSLITIDGLRYLKPLKNLRSVSLESCKVTASGIKKLQS 58
>gi|426371210|ref|XP_004052544.1| PREDICTED: F-box/LRR-repeat protein 14 [Gorilla gorilla gorilla]
Length = 307
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 161/325 (49%), Gaps = 56/325 (17%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKL 206
K + L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRL 77
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
LNL C LSD G + +T +
Sbjct: 78 KSLNLRSCR-----------------------HLSDVGIGHLAGMTRSAA---------- 104
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLS 324
EG + L L C +L+D L+H+S GLT L +NLSF G ISD L L+ +
Sbjct: 105 EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMG 159
Query: 325 SLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEI 379
SL+SLNL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +
Sbjct: 160 SLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSL 218
Query: 380 CGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSA 436
C ++D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT
Sbjct: 219 CSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 278
Query: 437 GLRHLKPLKNLRSLTLESCKVTAND 461
GL + L L+ L L ++T ++
Sbjct: 279 GLERITQLPCLKVLNLGLWQMTDSE 303
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 67/330 (20%)
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
K+ +L++L+ + C QI+D L + AQ +K L L+
Sbjct: 20 KEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG------LEVLE 55
Query: 138 LERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQI 187
L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+ L +
Sbjct: 56 LGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTL 115
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
C K+TD + ++ +GL L LLNL C +SD G
Sbjct: 116 QDCQKLTDLSLKHISRGLTGLRLLNLSFCG-----------------------GISDAGL 152
Query: 246 EKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTN 301
S + +L SLNL SC I D G+++L G L L++S +VG L +++ GL
Sbjct: 153 LHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDG 212
Query: 302 LESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG- 357
L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +DL+G
Sbjct: 213 LKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGC 272
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
RIT G + L+ L + +TD+
Sbjct: 273 TRITKRGLERITQLPCLKVLNLGLWQMTDS 302
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 121 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 180
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 181 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 240
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 241 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 300
Query: 242 D 242
D
Sbjct: 301 D 301
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 280 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 335
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 33 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 87
Query: 336 ITDTGLAALTSLT--------GLTHLDLFGA-RITDSGAAYL-RNFKNLR--SLEICGGG 383
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 88 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 146
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 441
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 147 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 206
Query: 442 -KPLKNLRSLTLESCKVTANDIKRL 465
+ L L+SL+L SC ++ + I R+
Sbjct: 207 AQGLDGLKSLSLCSCHISDDGINRM 231
>gi|421888173|ref|ZP_16319281.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
gi|378966462|emb|CCF96029.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum K60-1]
Length = 466
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 13/323 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL +CT G + G+ +L + L++ C DS + L+G L +L I
Sbjct: 150 LRELDLSQCT----GPITAAGIARLLALPLDRLDVGGCRLNADS-ARLLAGHPTLTALDI 204
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D+G+A +KLT LN + A + +L+A ++ L+++ ++ D+G
Sbjct: 205 RRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISDNEIGDEGARA 264
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ T L L+ GIG EG L L L+LS ++G+ G L T L ++++
Sbjct: 265 LAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLHV 324
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ LA ++L +L+L + I G A + T LT L+L I + +A+
Sbjct: 325 CGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGI-ERVSAW 383
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
N K L L+I + DA + + D +LT LN S N + D ++G T L +LN
Sbjct: 384 ANNSK-LTKLDISNNRIGDAAAQVLADSRTLTTLNASSN-RIGDAGASALAGNTTLATLN 441
Query: 428 VSNSRITSAGLRHLKPLKNLRSL 450
VS +RI AGL L+ L+ L
Sbjct: 442 VSFNRIGEAGLLALEANTTLKKL 464
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 14/295 (4%)
Query: 168 ITDSDMKPLSGLTNLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+D+D++ L +L+ L +S +T +GIA L L L L++ GC + A L+
Sbjct: 138 FSDADLQRLP--PSLRELDLSQCTGPITAAGIARLLAL-PLDRLDVGGCRLNADSARLLA 194
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L L++ R + D G F+R L +LN S GIG G+ L + L++SD
Sbjct: 195 GHPTLTALDIRRNAIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDISD 254
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G R L+G T L ++ S +GI R LA +L SL+L +I G AL
Sbjct: 255 NEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALG 314
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T LT L + G + AA L L +L++ + AG + ++LT LNLS
Sbjct: 315 ENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSN 374
Query: 406 NCNLTDKTLELISGL---TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N +E +S + L L++SN+RI A + L + L +L S ++
Sbjct: 375 NG------IERVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRI 423
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 3/271 (1%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A + AG L LD+ R G+ KL +LN N I + ++ L+
Sbjct: 185 LNADSARLLAGHPTLTALDIRRNAIGDAGVAAFARNKKLTALNAS-SNGIGPAGVRALAA 243
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
T + +L IS +++ D G L G LT L+ + +L+ +L L+L+
Sbjct: 244 NTTIATLDISDNEIGDEGARALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYN 303
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ +G E T L +L++ +G L L L+LS +GS+G R
Sbjct: 304 EIGAEGAEALGENTTLTTLHVCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGT 363
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +NLS GI + A S L L++ +I D L LT L+
Sbjct: 364 NTTLTKLNLSNNGIE--RVSAWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSN 421
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
RI D+GA+ L L +L + + +AG+
Sbjct: 422 RIGDAGASALAGNTTLATLNVSFNRIGEAGL 452
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 134/324 (41%), Gaps = 32/324 (9%)
Query: 57 SSLLSVDLSG--SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DLS +T +G+ L L LD C +D L G LT+L R
Sbjct: 148 PSLRELDLSQCTGPITAAGIARLLALP-LDRLDVGGCRLNADSA-RLLAGHPTLTALDIR 205
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
RN AI G+ AFA L L+ G+ L + +L+I N I D +
Sbjct: 206 RN-AIGDAGVAAFARNKKLTALNASSNGIGPAGVRALAANTTIATLDIS-DNEIGDEGAR 263
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL---------- 224
L+G T L L S S + G L L L+L + A ++L
Sbjct: 264 ALAGHTALTKLDASDSGIGPEGTRALATSMTLASLDLSYNEIGAEGAEALGENTTLTTLH 323
Query: 225 ---SALG-----------SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ALG +L L+L+ + G F T L LNL + GI E +
Sbjct: 324 VCGNALGHREAALLAASATLTTLDLSSNAIGSAGARAFGTNTTLTKLNLSNNGI--ERVS 381
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L++S+ ++G + + L+ L ++N S I D LAG ++L +LN
Sbjct: 382 AWANNSKLTKLDISNNRIGDAAAQVLADSRTLTTLNASSNRIGDAGASALAGNTTLATLN 441
Query: 331 LDARQITDTGLAALTSLTGLTHLD 354
+ +I + GL AL + T L L+
Sbjct: 442 VSFNRIGEAGLLALEANTTLKKLE 465
>gi|395743765|ref|XP_003777984.1| PREDICTED: F-box/LRR-repeat protein 14-like, partial [Pongo abelii]
Length = 296
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 159/320 (49%), Gaps = 56/320 (17%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNL 211
L +LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL
Sbjct: 14 LRALNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNL 71
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
C LSD G + +T + EG +
Sbjct: 72 RSCR-----------------------HLSDVGIGHLAGMTRSAA----------EGCLG 98
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSL 329
L L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SL
Sbjct: 99 LEQLTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSL 153
Query: 330 NLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGL 384
NL + I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C +
Sbjct: 154 NLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHI 212
Query: 385 TDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHL 441
+D G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL +
Sbjct: 213 SDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 272
Query: 442 KPLKNLRSLTLESCKVTAND 461
L L+ L L ++T ++
Sbjct: 273 TQLPCLKVLNLGLWQMTDSE 292
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 69/338 (20%)
Query: 72 SGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+GL H +++ +L++L+ + C QI+D L + AQ +K
Sbjct: 1 NGLGHAFVQEIGSLRALNLSLCKQITDSSLGRI------------------AQYLKG--- 39
Query: 130 LINLVKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------- 180
L L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T
Sbjct: 40 ---LEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGC 96
Query: 181 -NLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L+ L + C K+TD + ++ +GL L LLNL C
Sbjct: 97 LGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG---------------------- 134
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLR 294
+SD G S + +L SLNL SC I D G+++L G L L++S +VG L
Sbjct: 135 -GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLA 193
Query: 295 HLS-GLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGL 350
+++ GL L+S++L ISD + R + + L++LN+ +ITD GL + L+ L
Sbjct: 194 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 253
Query: 351 THLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
T +DL+G RIT G + L+ L + +TD+
Sbjct: 254 TGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 291
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ + + L+ L+ +FC ISD GL HL + +L SL+ R + I+ G+
Sbjct: 110 LTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL 169
Query: 128 A-GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
A G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++
Sbjct: 170 AMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRT 229
Query: 185 LQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLS 241
L I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++
Sbjct: 230 LNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMT 289
Query: 242 D 242
D
Sbjct: 290 D 290
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 280 CLELSDTQVGSSGLRHLSGLTNLE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQ 335
C +++D+ +G ++L GL LE N++ TG+ L GL LKSLNL + R
Sbjct: 22 CKQITDSSLGRIA-QYLKGLEVLELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRH 76
Query: 336 ITDTGLAALTSLT--------GLTHLDLFG-ARITDSGAAYL-RNFKNLR--SLEICGGG 383
++D G+ L +T GL L L ++TD ++ R LR +L CGG
Sbjct: 77 LSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGG- 135
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL 441
++DAG+ H+ + SL LNL N++D + L G L L+VS ++ L ++
Sbjct: 136 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYI 195
Query: 442 -KPLKNLRSLTLESCKVTANDIKRL 465
+ L L+SL+L SC ++ + I R+
Sbjct: 196 AQGLDGLKSLSLCSCHISDDGINRM 220
>gi|195029827|ref|XP_001987773.1| GH22100 [Drosophila grimshawi]
gi|193903773|gb|EDW02640.1| GH22100 [Drosophila grimshawi]
Length = 550
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 168/349 (48%), Gaps = 66/349 (18%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 214 SPSLFNCLV-RRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 255
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR---------------- 103
+V D L H D NL++LD + C QI+D L +HL+
Sbjct: 256 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLETLELGGCCNITNT 315
Query: 104 -------GLSNLTSLSFRRNNAITAQGMKAFAGL--------INLVKLDLERCTRIHGGL 148
GL L L+ R I+ QG+ AG + L L L+ C R+
Sbjct: 316 GLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFLGLQDCQRLSDEA 375
Query: 149 VN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQ 204
+ +GL L+S+N+ +C +TDS +K L+ + L+ L + SC ++D G+AYL +G
Sbjct: 376 LGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSCDNISDIGMAYLTEGGS 435
Query: 205 KLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDS 261
+ L++ C ++ L ++ L L L+LN+C ++D G K ++ L LE+LN+
Sbjct: 436 GINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHITDQGMLKIAKSLHELENLNIGQ 495
Query: 262 CG-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
C I D+GL L L NLK ++L TQ+ S G+ + L L+ +NL
Sbjct: 496 CSRITDKGLQTLAEDLSNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 544
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 158/318 (49%), Gaps = 35/318 (11%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSG--LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTL 208
G+ L SLN+ C + D ++ L NLK+L +S C ++TD+ + + + L+ L
Sbjct: 244 GVPALTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLKNLET 303
Query: 209 LNLEGC--PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEK---FSRLTNLESLNLDSC 262
L L GC L L L +LNL C +SD G FSR T +L L+
Sbjct: 304 LELGGCCNITNTGLLLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEFL 363
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
G+ D C LSD +G GLT+L+SINLSF ++D L+ LA
Sbjct: 364 GLQD-------------CQRLSDEALGHIA----QGLTSLKSINLSFCVSVTDSGLKHLA 406
Query: 322 GLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSL 377
+ L+ LNL + I+D G+A LT +G+ LD+ F +I+D ++ + LRSL
Sbjct: 407 RMPKLEQLNLRSCDNISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSL 466
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRIT 434
+ +TD G+ I K L L LN+ Q +TDK L+ L L+ L ++++ ++++
Sbjct: 467 SLNQCHITDQGMLKIAKSLHELENLNIGQCSRITDKGLQTLAEDLSNLKTIDLYGCTQLS 526
Query: 435 SAGLRHLKPLKNLRSLTL 452
S G+ + L L+ L L
Sbjct: 527 SKGIDIIMKLPKLQKLNL 544
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 248 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLKNLETLEL 306
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL L+ LNL + I+D G+ L + G L+
Sbjct: 307 GGCCNITNTGL----LLIAWGLKKLRHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEF 362
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 363 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 421
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVT 458
++D + L G +G+ L+VS +I+ L H+ + L LRSL+L C +T
Sbjct: 422 ISDIGMAYLTEGGSGINCLDVSFCDKISDQALTHIAQGLFRLRSLSLNQCHIT 474
>gi|351713942|gb|EHB16861.1| F-box/LRR-repeat protein 14 [Heterocephalus glaber]
Length = 399
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 180/380 (47%), Gaps = 66/380 (17%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D +H+S G +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS------QHISRGRWRGRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 260
Query: 333 A-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 387
+ I+DTG+ A+ SL L+ LD+ F ++ D AY+ + L+SL +C ++D
Sbjct: 261 SCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDD 319
Query: 388 GV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPL 444
G+ + ++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L
Sbjct: 320 GINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQL 379
Query: 445 KNLRSLTLESCKVTANDIKR 464
L+ L L ++T ++ R
Sbjct: 380 PCLKVLNLGLWQMTDSEKVR 399
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 161/333 (48%), Gaps = 45/333 (13%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
++ +N++SL+ + C ++D GL H ++ + +L +L+ IT + A + L
Sbjct: 86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145
Query: 134 VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
L+L C+ I G L+ GL +L+SLN++ C ++D + L+G+T L+
Sbjct: 146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L + C K+TD +G + LLNL C +SD
Sbjct: 206 QLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCG-----------------------GISD 242
Query: 243 DGCEKFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-G 298
G S + +L SLNL SC I D G+++L G L L++S +VG L +++ G
Sbjct: 243 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQG 302
Query: 299 LTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDL 355
L L+S++L ISD + R + + L++LN+ +ITD GL + L+ LT +DL
Sbjct: 303 LDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDL 362
Query: 356 FG-ARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+G RIT G + L+ L + +TD+
Sbjct: 363 YGCTRITKRGLERITQLPCLKVLNLGLWQMTDS 395
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 33/242 (13%)
Query: 251 LTNLESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTN 301
+ N+ESLNL C G+G + + L L C +++D+ +G ++L GL
Sbjct: 89 MANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIA-QYLKGLEV 147
Query: 302 LE---SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT--------G 349
LE N++ TG+ L GL LKSLNL + R ++D G+ L +T G
Sbjct: 148 LELGGCSNITNTGL----LLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLG 203
Query: 350 LTHLDLFG-ARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L L ++TD R R +L CGG ++DAG+ H+ + SL LNL
Sbjct: 204 LEQLTLQDCQKLTDLSQHISRGRWRGRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSC 262
Query: 407 CNLTDK-TLELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
N++D + L G L L+VS ++ L ++ + L L+SL+L SC ++ + I
Sbjct: 263 DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGIN 322
Query: 464 RL 465
R+
Sbjct: 323 RM 324
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 29/179 (16%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
++D+GL+HL +L+SL+ C ISD G+ HL
Sbjct: 240 ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHL------------------------AM 275
Query: 129 GLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
G + L LD+ C ++ + +GL L+SL++ C+ D + + + L++L
Sbjct: 276 GSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLN 335
Query: 187 I-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSD 242
I C ++TD G+ + + L +LT ++L GC +T L+ ++ L L LNL Q++D
Sbjct: 336 IGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTD 394
>gi|320165720|gb|EFW42619.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 664
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 156/368 (42%), Gaps = 7/368 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVN 150
QI+ ++ GL+ L L + NN IT+ AF+GL +N ++L+ + I
Sbjct: 190 QIATVAIDAFSGLTALVQL-YLYNNQITSISANAFSGLSKLNTLQLNNNWLSAIPSSA-- 246
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N IT +GLT L+ L + +++ I GL L L
Sbjct: 247 FTGLTALTQL-LLYNNQITTVPSSAFTGLTALQFLYLYNNQIATVAINAFSGLTALVQLR 305
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L+ +T ++ S L L L+L LS F+ LT L L LD+ I
Sbjct: 306 LDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPAN 365
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+GL L L L + Q+ + SGLT L + L I+ L GLS+L L
Sbjct: 366 AFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLY 425
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L QIT + LT LT L LF IT A L L++ LT
Sbjct: 426 LYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSLNQLTSIPAG 485
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L++LT L L N L+ +GLT L+ L + N++IT+ L L L
Sbjct: 486 AFSGLTALTQLLLYNNW-LSAVPSSAFTGLTALLYLYLYNNQITTVAANAFTGLTALVQL 544
Query: 451 TLESCKVT 458
L ++T
Sbjct: 545 QLYGNQIT 552
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 189/474 (39%), Gaps = 63/474 (13%)
Query: 15 VYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG 73
+Y+ +T +S AF + L L L N+ W+ I S +G
Sbjct: 210 LYNNQITSISANAFSGLSKLNTLQL------NNNWLSAIPSSA-------FTGLTALTQL 256
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L++ + + S F GL L+ L + NN I + AF+GL L
Sbjct: 257 LLYNNQITTVPSSAFT--------GLTALQFL-------YLYNNQIATVAINAFSGLTAL 301
Query: 134 V--KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISC 189
V +LD + T + GL KL +L++ W + I S +GLT L L++
Sbjct: 302 VQLRLDTNQITTVPANA--FSGLSKLNTLHLYNNWLSAIPSSAF---TGLTALTQLRLDT 356
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++T GL L L L +T ++ S L +L L L Q++ +
Sbjct: 357 NQITTVPANAFSGLTALIYLYLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSALT 416
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS- 308
L+ L L L + I +GL L L L + + S +GLT L ++LS
Sbjct: 417 GLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLDLSL 476
Query: 309 --FTGISDGSLRKLAGLSSLKSLN--LDA-------------------RQITDTGLAALT 345
T I G+ L L+ L N L A QIT A T
Sbjct: 477 NQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAANAFT 536
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT L L L+G +IT A+ +L L + +T V L+ L+LL LS
Sbjct: 537 GLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLELSN 596
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N +T SGLT + L++ N+ +++ L L++L L + ++T+
Sbjct: 597 N-QITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITS 649
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 161/384 (41%), Gaps = 34/384 (8%)
Query: 104 GLSNLTSLSFRRNNAITAQGM------------------------KAFAGLINLVKLDL- 138
G+ T++ + +NN IT+ AF+GL L LDL
Sbjct: 56 GIPVTTTILYLQNNQITSISANAFSSLTLLTYLSLSSNPITNIASSAFSGLSVLNTLDLT 115
Query: 139 -ERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
+ T + GL KL +L + W + I S +GLT L L + +++T
Sbjct: 116 NNQITTVPANA--FSGLSKLNTLYLYNNWLSAIPSSAF---TGLTALTQLLLHNNQITTV 170
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ GL L LL L + +D+ S L +L L L Q++ FS L+ L
Sbjct: 171 PSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNNQITSISANAFSGLSKLN 230
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
+L L++ + TGL L L L + Q+ + +GLT L+ + L I+
Sbjct: 231 TLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTGLTALQFLYLYNNQIATV 290
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
++ +GL++L L LD QIT A + L+ L L L+ ++ ++ L
Sbjct: 291 AINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLHLYNNWLSAIPSSAFTGLTALT 350
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + +T L++L L L N +T SGLT LV L + N++IT+
Sbjct: 351 QLRLDTNQITTVPANAFSGLTALIYLYLYNN-QITTVPANAFSGLTALVQLYLYNNQITT 409
Query: 436 AGLRHLKPLKNLRSLTLESCKVTA 459
L L L L L + ++T+
Sbjct: 410 IPSSALTGLSALTQLYLYNNQITS 433
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 160/393 (40%), Gaps = 18/393 (4%)
Query: 52 IASQGSSLLSV----DLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGL 105
IAS S LSV DL+ + +T S L +L N+ I L L
Sbjct: 98 IASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTGLTAL 157
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
+ L NN IT AF GL L L L + GL L L + +
Sbjct: 158 TQL----LLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYL-YN 212
Query: 166 NCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N IT SGL+ L +LQ++ S + S L L +L L N + V ++
Sbjct: 213 NQITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFT 272
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L+AL L+ N Q++ FS LT L L LD+ I +GL L L
Sbjct: 273 GLTALQFLYLYN---NQIATVAINAFSGLTALVQLRLDTNQITTVPANAFSGLSKLNTLH 329
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L + + + +GLT L + L I+ +GL++L L L QIT
Sbjct: 330 LYNNWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTALIYLYLYNNQITTVPAN 389
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A + LT L L L+ +IT ++ L L L + +T L++LT L
Sbjct: 390 AFSGLTALVQLYLYNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLR 449
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L N +T +GLT L L++S +++TS
Sbjct: 450 LFNNT-ITSILANAFTGLTKLTYLDLSLNQLTS 481
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 139/325 (42%), Gaps = 7/325 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
GL+ LT L N IT AF+GL L+ L L + T + GL L
Sbjct: 343 FTGLTALTQLRLDTNQ-ITTVPANAFSGLTALIYLYLYNNQITTVPANA--FSGLTALVQ 399
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N IT L+GL+ L L + +++T GL LT L L +T+
Sbjct: 400 LYL-YNNQITTIPSSALTGLSALTQLYLYNNQITSVPANGFSGLTALTDLRLFNNTITSI 458
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
++ + L L YL+L+ QL+ FS LT L L L + + TGL L
Sbjct: 459 LANAFTGLTKLTYLDLSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALL 518
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + +GLT L + L I+ S AG+SSL L L + +IT
Sbjct: 519 YLYLYNNQITTVAANAFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAI 578
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ A T LT L+ L+L +IT A + L + L+ L++L
Sbjct: 579 FVNAFTGLTHLSLLELSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQ 638
Query: 400 LLNLSQNCNLTDKTLELISGLTGLV 424
L L N +T +GLT LV
Sbjct: 639 AL-LLYNNQITSVAANAFTGLTALV 662
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 132/311 (42%), Gaps = 6/311 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ L L + NN IT AF+GL LV+L L + T I
Sbjct: 358 QITTVPANAFSGLTALIYL-YLYNNQITTVPANAFSGLTALVQLYLYNNQITTIPSSA-- 414
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L GL L L + + N IT SGLT L L++ + +T GL KLT L+
Sbjct: 415 LTGLSALTQLYL-YNNQITSVPANGFSGLTALTDLRLFNNTITSILANAFTGLTKLTYLD 473
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L +T+ + S L +L L L LS F+ LT L L L + I
Sbjct: 474 LSLNQLTSIPAGAFSGLTALTQLLLYNNWLSAVPSSAFTGLTALLYLYLYNNQITTVAAN 533
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
TGL L L+L Q+ + +G+++L + L I+ + GL+ L L
Sbjct: 534 AFTGLTALVQLQLYGNQITTISASAFAGMSSLVQLYLYSNRITAIFVNAFTGLTHLSLLE 593
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L QIT A + LT +T L L+ ++ ++ L++L + +T
Sbjct: 594 LSNNQITSLPANAFSGLTAMTQLSLYNNSLSAVPSSAFTGLTALQALLLYNNQITSVAAN 653
Query: 391 HIKDLSSLTLL 401
L++L LL
Sbjct: 654 AFTGLTALVLL 664
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 118/280 (42%), Gaps = 4/280 (1%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+T+ + GL L L+L +T ++ S L L L L LS F+
Sbjct: 94 PITNIASSAFSGLSVLNTLDLTNNQITTVPANAFSGLSKLNTLYLYNNWLSAIPSSAFTG 153
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
LT L L L + I TGL L+ L L + Q+ + + SGLT L + L
Sbjct: 154 LTALTQLLLHNNQITTVPSSAFTGLTALQLLYLYNNQIATVAIDAFSGLTALVQLYLYNN 213
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+ S +GLS L +L L+ ++ +A T LT LT L L+ +IT ++
Sbjct: 214 QITSISANAFSGLSKLNTLQLNNNWLSAIPSSAFTGLTALTQLLLYNNQITTVPSSAFTG 273
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L+ L + + + L++L L L N +T SGL+ L +L++ N
Sbjct: 274 LTALQFLYLYNNQIATVAINAFSGLTALVQLRLDTN-QITTVPANAFSGLSKLNTLHLYN 332
Query: 431 ---SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
S I S+ L L LR T + V AN L +
Sbjct: 333 NWLSAIPSSAFTGLTALTQLRLDTNQITTVPANAFSGLTA 372
>gi|406831323|ref|ZP_11090917.1| hypothetical protein SpalD1_06790 [Schlesneria paludicola DSM
18645]
Length = 539
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 146/322 (45%), Gaps = 38/322 (11%)
Query: 167 CITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----AC 220
+ D + S L+ L+ +Q + T G+++L L L L+ +A A
Sbjct: 172 VLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDAT 231
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLK 279
L S+S + SL LNL+ C ++D+G + +L NL L++ G + D L + L +LK
Sbjct: 232 LRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLK 291
Query: 280 CLELSDTQVGSS-GLRHLS--------GLTNLESINLSFTGIS----------------- 313
L L+ T VG+ G H S LT LE ++LS +S
Sbjct: 292 VLTLT-THVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRINRN 350
Query: 314 ---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
D + +A L L++ ++TDT L L L LT L + I+D+ A+L+
Sbjct: 351 QFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKL 410
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LTDKTLELISGLTGLVSLNVS 429
F NL S+ + LTD ++++ +SLT L+L+ N + LE ++ L L +L +
Sbjct: 411 FPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLANLPNLETLELR 470
Query: 430 NSRITSAGLRHLKPLKNLRSLT 451
GL+ ++ K LT
Sbjct: 471 IIPFQGGGLKLIRDAKEPEILT 492
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGIS----- 313
D + D+ L + L L+ ++ Q GL HLS LTNLE ++ SF+ S
Sbjct: 169 DYGVLNDKALAKFSVLSTLRGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELG 228
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFK 372
D +LR ++ + SL+ LNL +TD GL +L L LTHL ++ R+TD+ + + K
Sbjct: 229 DATLRSISEIESLRELNLSECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLK 288
Query: 373 NLRSLEICGGGLTDAGVKHIKD--------LSSLTLLNLSQNCNLTD-------KTLEL- 416
+L+ L + T G H + L+ L L+LS + TD K+L +
Sbjct: 289 HLKVLTLTTHVGTPLGRMHFSESATNQLIALTELEHLDLSGHDVSTDLLNFPRLKSLRIN 348
Query: 417 -----------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
I+ L L+VS S +T L HL+PL +L L + + +++ N I L
Sbjct: 349 RNQFDDDLAKAIAKCRELTHLDVSCSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHL 408
Query: 466 QSRDLPNLVS 475
+ PNL S
Sbjct: 409 KL--FPNLAS 416
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 239 QLSDDGCEKFSRLTNLESLNLD-----SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
Q + +G S+LTNLE L+ + +GD L +++ + +L+ L LS+ V GL
Sbjct: 197 QFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLSECGVTDEGL 256
Query: 294 RHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDAR--------QITDTGLAAL 344
+ L L NL +++ G ++D +L +A L LK L L +++ L
Sbjct: 257 KSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMHFSESATNQL 316
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+LT L HLDL G ++ L NF L+SL I D K I LT L++S
Sbjct: 317 IALTELEHLDLSGHDVSTD----LLNFPRLKSLRINRNQFDDDLAKAIAKCRELTHLDVS 372
Query: 405 QNCN-LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
C+ +TD LE + L L L++ I+ + HLK NL S+TL + ++T ++
Sbjct: 373 --CSEMTDTALEHLRPLPSLTQLHIRAEEISDNAIAHLKLFPNLASVTLHTAELTDKSLE 430
Query: 464 RL 465
L
Sbjct: 431 YL 432
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 164/385 (42%), Gaps = 43/385 (11%)
Query: 24 SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
+++A ++ A Q L + + + + + +++S+ G + D L S L
Sbjct: 129 TMKAVKERAKQRLPKWIHEYFDSPKLRIFSDDDGNVVSLSDYGV-LNDKALAKFSVLSTL 187
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNL----TSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+ + F Q + GL HL L+NL S S + N + +++ + + +L +L+L
Sbjct: 188 RGIQFEGAPQFTVEGLSHLSKLTNLERLSASFSSQSANELGDATLRSISEIESLRELNLS 247
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS--------K 191
C GL +L+ L L L+I +TD+ + ++ L +LK L ++
Sbjct: 248 ECGVTDEGLKSLEKLPNLTHLSIYQEGRLTDAALSTIAKLKHLKVLTLTTHVGTPLGRMH 307
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
++S L L +L L+L G V+ L+ L L +NR Q DD + ++
Sbjct: 308 FSESATNQLIALTELEHLDLSGHDVSTDLLN----FPRLKSLRINRNQFDDDLAKAIAKC 363
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L L ++ C E++DT L HL L +L +++
Sbjct: 364 RELTHL-------------------DVSCSEMTDT-----ALEHLRPLPSLTQLHIRAEE 399
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA--RITDSGAAYLR 369
ISD ++ L +L S+ L ++TD L L+ LT LDL A + G L
Sbjct: 400 ISDNAIAHLKLFPNLASVTLHTAELTDKSLEYLSQTASLTKLDLNWATNHFSRHGLEQLA 459
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKD 394
N NL +LE+ G+K I+D
Sbjct: 460 NLPNLETLELRIIPFQGGGLKLIRD 484
>gi|91085811|ref|XP_974701.1| PREDICTED: similar to partner of paired CG9952-PA [Tribolium
castaneum]
Length = 439
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 162/317 (51%), Gaps = 37/317 (11%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ LESLN++ C + D + ++ L L +S C +VTD+ + + + L+ L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IG 265
+L L GC L A G L L+ LNL SC +G
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWG----------------------LKKLKRLNLRSCWHVG 236
Query: 266 DEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAG 322
D+G+ +L +G +L+ L L D Q + L+H +GLT+L SINLSF I+D L+ LA
Sbjct: 237 DQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAK 296
Query: 323 LSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLE 378
+++L+ LNL + I+DTG+A L + ++ LD+ F +I D ++ + NLR+L
Sbjct: 297 MTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLL 356
Query: 379 ICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITS 435
+ L+D G+ I + L L LN+ Q +TDK L I+ L L +++ +RIT+
Sbjct: 357 MSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITT 416
Query: 436 AGLRHLKPLKNLRSLTL 452
GL + L L L L
Sbjct: 417 VGLERIMKLPQLSVLNL 433
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 152/295 (51%), Gaps = 17/295 (5%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGM-KAF-AGLINLVKLDLERCTRI-HGGLVNLKGLMK-L 157
++G+ NL SL+ R + G+ AF A L +LDL C ++ L + +K L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLTRIAQHLKNL 198
Query: 158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
E L + C+ +T+S + ++ GL LK L + SC V D GI +L G L L L+ C
Sbjct: 199 EVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQDC 258
Query: 215 -PVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
++ L + L SL +NL+ C ++D G + +++TNL LNL SC I D G+
Sbjct: 259 QKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSCDNISDTGMAF 318
Query: 272 LT-GLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLK 327
L G + L++S ++G L H+S GL NL ++ +S +SD L K+A L L+
Sbjct: 319 LAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKIANSLHDLE 378
Query: 328 SLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 379
+LN+ ++TD GL + SL L +DL+G RIT G + L L +
Sbjct: 379 TLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRITTVGLERIMKLPQLSVLNL 433
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 7/199 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V D+ + +AS SL + L ++D L H ++L S++ +FC+ I+D GL+HL
Sbjct: 235 VGDQGIQHLASGNPSLEHLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHL 294
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLES 159
++NL L+ R + I+ GM A G + LD+ C +I LV++ +GL L +
Sbjct: 295 AKMTNLRELNLRSCDNISDTGMAFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRN 354
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-V 216
L + C + K + L +L++L I CS+VTD G+ + + L +L ++L GC +
Sbjct: 355 LLMSACQLSDEGLAKIANSLHDLETLNIGQCSRVTDKGLTTIAESLLRLKCIDLYGCTRI 414
Query: 217 TAACLDSLSALGSLFYLNL 235
T L+ + L L LNL
Sbjct: 415 TTVGLERIMKLPQLSVLNL 433
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 296 LSGLTNLESINLSF------TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-L 347
+ G+ NLES+NL GIS + A +L L+L +Q+TDT L + L
Sbjct: 139 IQGIPNLESLNLRGCYNVGDVGISHAFV---ADSPTLTELDLSLCKQVTDTSLTRIAQHL 195
Query: 348 TGLTHLDLFG-ARITDSG----AAYLRNFK--NLRSLEICGGGLTDAGVKHIKD-LSSLT 399
L L+L G + +T+SG A L+ K NLRS G D G++H+ SL
Sbjct: 196 KNLEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVG----DQGIQHLASGNPSLE 251
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L+D+ L+ +GLT L+S+N+S IT +GL+HL + NLR L L SC
Sbjct: 252 HLGLQDCQKLSDEALKHATGLTSLISINLSFCVSITDSGLKHLAKMTNLRELNLRSC 308
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 24/234 (10%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ NLESLNL C +GD G+ + LT L C +++DT + R L N
Sbjct: 142 IPNLESLNLRGCYNVGDVGISHAFVADSPTLTELDLSLCKQVTDTSLT----RIAQHLKN 197
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDLFG 357
LE + L + +++ L +A GL LK LNL + + D G+ L S L HL L
Sbjct: 198 LEVLELGGCSNVTNSGLMLIAWGLKKLKRLNLRSCWHVGDQGIQHLASGNPSLEHLGLQD 257
Query: 358 -ARITDSGAAYLRNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+++D + +L S L C +TD+G+KH+ +++L LNL N++D +
Sbjct: 258 CQKLSDEALKHATGLTSLISINLSFCVS-ITDSGLKHLAKMTNLRELNLRSCDNISDTGM 316
Query: 415 ELIS-GLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++ G + + SL+VS +I L H+ + L NLR+L + +C+++ + ++
Sbjct: 317 AFLAEGGSRISSLDVSFCDKIGDQALVHISQGLFNLRNLLMSACQLSDEGLAKI 370
>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]
Length = 389
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L + S+L++LD + C I+D + L LS+L +L AIT + + L +L L
Sbjct: 62 LSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAIT--DVSPLSKLSSLRML 117
Query: 137 DLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
DL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C+ +TD
Sbjct: 118 DLSHCT----GITDVSPLSKLSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITD 173
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCE 246
++ L L L L+L C + LS L SL L+L+ C D G +
Sbjct: 174 --VSPLSELSSLRTLDLSHCTGITD-VSPLSKLSSLHELDLSHCTGITDVSLLYRFFGLD 230
Query: 247 KF--------------SRLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDTQVGS 290
K S+L+ L +L+L C GI D L L GLC L +LS G
Sbjct: 231 KLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLGGLCEL---DLSHCT-GI 286
Query: 291 SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLT 348
+ + LS L++L ++LS TGI+D S L+ LSSL++L+L R ITD ++ L++L+
Sbjct: 287 TDVSPLSKLSSLRKLDLSHCTGITDVS--PLSVLSSLRTLDLSHCRGITD--VSPLSTLS 342
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
GL LDL G SG L + LR L G
Sbjct: 343 GLEVLDLSGCTGVRSGLESLCSLSFLRYLSFLG 375
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 194/394 (49%), Gaps = 49/394 (12%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L LS+L L IT + + L +L LDL CT I
Sbjct: 2 LDLSHCTGITD--VSPLSVLSSLRMLDLSHCTGIT--DVSPLSVLSSLRMLDLSHCTGI- 56
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
+ L L L +L++ C ITD + PLS L++L++L +S C+ +TD ++ L L
Sbjct: 57 TDVSPLSELSSLRTLDLSHCTGITD--VSPLSKLSSLRTLDLSHCTAITD--VSPLSKLS 112
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-G 263
L +L+L C + LS L SL L+L+ C D S L++L +L+L C G
Sbjct: 113 SLRMLDLSHCTGITD-VSPLSKLSSLRTLDLSHCTGITD-VSPLSELSSLRTLDLSHCTG 170
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSL----- 317
I D + L+ L +L+ L+LS G + + LS L++L ++LS TGI+D SL
Sbjct: 171 ITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSKLSSLHELDLSHCTGITDVSLLYRFF 227
Query: 318 ----------------RKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR- 359
L+ LS L++L+L ITD ++ L+ L GL LDL
Sbjct: 228 GLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITD--VSPLSKLGGLCELDLSHCTG 285
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
ITD + L +LR L++ G+TD V + LSSL L+LS +TD + +S
Sbjct: 286 ITD--VSPLSKLSSLRKLDLSHCTGITD--VSPLSVLSSLRTLDLSHCRGITD--VSPLS 339
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L+GL L++S +GL L L LR L+
Sbjct: 340 TLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 33/226 (14%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L LD +
Sbjct: 159 SLRTLDLSHCTGITDVSP---LSELSSLRTLDLSHCTGITD--VSPLSKLSSLHELDLSH 213
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 214 CTGITDVSLLYRFFGLDKLGLSHCTGITDVSPLSKLSGLRTLDLSHCTGITDVSPLSKLG 273
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
L +LDL CT G+ ++ L KL SL + +C +D+ PLS L++L++L +S C
Sbjct: 274 GLCELDLSHCT----GITDVSPLSKLSSLRKLDLSHCTGITDVSPLSVLSSLRTLDLSHC 329
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+TD ++ L L L +L+L GC + L+SL +L L YL+
Sbjct: 330 RGITD--VSPLSTLSGLEVLDLSGCTGVRSGLESLCSLSFLRYLSF 373
>gi|422811192|ref|ZP_16859602.1| internalin P4 [Listeria monocytogenes FSL J1-208]
gi|378750825|gb|EHY61417.1| internalin P4 [Listeria monocytogenes FSL J1-208]
Length = 776
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 147/307 (47%), Gaps = 51/307 (16%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD++PLSGL L+ + S+++D L LS L +L
Sbjct: 115 SDLRPLSGLIKLEVISFYHSQISD--------------------------LSPLSELINL 148
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L LN Q+SD + TNL +LN+ S I D L L+ L NL L+ + Q+
Sbjct: 149 TSLTLNDNQISD--ISPLANSTNLTTLNMSSNKISD--LSPLSNLSNLNKLDFRENQI-- 202
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S L LSGL NL S+ ++ ISD + LA L++L +LN+ QITD +
Sbjct: 203 SDLSPLSGLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVD 260
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
HL + +ITD A L + NLRSL+I I DLSSL+ L + +L
Sbjct: 261 LHLSV--NQITDISA--LSDLTNLRSLDIDHN--------QIIDLSSLSNLTNLKRLHLV 308
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RD 469
D + I+ L+GL++L RI ++ + PL +L + LE V +N I + S ++
Sbjct: 309 DNQISSITPLSGLINLTDLEIRINQ--VKDVSPLSSLAN--LEMLYVDSNQISDISSLKN 364
Query: 470 LPNLVSF 476
L NLV F
Sbjct: 365 LKNLVLF 371
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 156/316 (49%), Gaps = 38/316 (12%)
Query: 59 LLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L +VD S SD+ SGLI L+ S S QISD L L L NLTSL+ N
Sbjct: 107 LENVDNSVSDLRPLSGLIKLEVISFYHS-------QISD--LSPLSELINLTSLTLNDNQ 157
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A NL L++ +I L L L L L+ + N I SD+ PLS
Sbjct: 158 I---SDISPLANSTNLTTLNM-SSNKI-SDLSPLSNLSNLNKLDFR-ENQI--SDLSPLS 209
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
GL NL SL I+ +K++D I+ L L LT LN+ +T S +L++N
Sbjct: 210 GLINLTSLTINANKISD--ISPLANLTNLTTLNMGINQITDLSSLSGLISLVDLHLSVN- 266
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
Q++D S LTNL SL++D I D L +L+ L NLK L L D Q+ S + LS
Sbjct: 267 -QITD--ISALSDLTNLRSLDIDHNQIID--LSSLSNLTNLKRLHLVDNQI--SSITPLS 319
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
GL NL + + + D + L+ L++L+ L +D+ QI+D ++SL L +L LF
Sbjct: 320 GLINLTDLEIRINQVKD--VSPLSSLANLEMLYVDSNQISD-----ISSLKNLKNLVLFS 372
Query: 358 AR---ITDSGAAYLRN 370
A I + Y +N
Sbjct: 373 AHSQTIVNKPVNYQKN 388
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 179/378 (47%), Gaps = 51/378 (13%)
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
+ L + N+++ S +N + +G++ L NL +L LE L L GL+KLE
Sbjct: 72 DELNSVENISADSGLYDNVASIEGVQY---LNNLTELRLENVDNSVSDLRPLSGLIKLEV 128
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ SD+ PLS L NL SL ++ ++++D I+ L LT LN+ + +
Sbjct: 129 ISFYHSQI---SDLSPLSELINLTSLTLNDNQISD--ISPLANSTNLTTLNMSSNKI--S 181
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
L LS L +L L+ Q+SD S L NL SL +++ I D + L L NL
Sbjct: 182 DLSPLSNLSNLNKLDFRENQISD--LSPLSGLINLTSLTINANKISD--ISPLANLTNLT 237
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L + Q+ + L LSGL +L ++LS I+D + L+ L++L+SL++D QI D
Sbjct: 238 TLNMGINQI--TDLSSLSGLISLVDLHLSVNQITD--ISALSDLTNLRSLDIDHNQIID- 292
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
L++L++LT L L L +I S L NL LEI + +KD+S L
Sbjct: 293 -LSSLSNLTNLKRLHLVDNQI--SSITPLSGLINLTDLEIR--------INQVKDVSPL- 340
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
S L L L V +++I + + LK LKNL + S +
Sbjct: 341 ------------------SSLANLEMLYVDSNQI--SDISSLKNLKNLVLFSAHSQTIVN 380
Query: 460 NDIKRLQSRDLPNLVSFR 477
+ ++ LPN ++ R
Sbjct: 381 KPVNYQKNLVLPNNITDR 398
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 26/228 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++++S + ++D L L + SNL LDF QISD L L GL NLTSL+
Sbjct: 168 TNLTTLNMSSNKISD--LSPLSNLSNLNKLDFREN-QISD--LSPLSGLINLTSLTI--- 219
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
NA + A L NL L++ +I + ++ L++ N IT D+ L
Sbjct: 220 NANKISDISPLANLTNLTTLNM-GINQITDLSSLSGLISLVD-LHLS-VNQIT--DISAL 274
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S LTNL+SL I +++ D S ++ L L++L L++ + +T LS L +L L +
Sbjct: 275 SDLTNLRSLDIDHNQIIDLSSLSNLTNLKRLHLVDNQISSITP-----LSGLINLTDLEI 329
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
Q+ D S L NLE L +DS I D ++ L NLK L L
Sbjct: 330 RINQVKD--VSPLSSLANLEMLYVDSNQISD-----ISSLKNLKNLVL 370
>gi|290993148|ref|XP_002679195.1| predicted protein [Naegleria gruberi]
gi|284092811|gb|EFC46451.1| predicted protein [Naegleria gruberi]
Length = 311
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 93/175 (53%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L L+++ ++ + G + S + L SLN+ + IGDEG ++ + L L++
Sbjct: 126 ISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDI 185
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
SD +G G++ +S + L S N+S I + + ++ + L SL++ I D+G+
Sbjct: 186 SDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGVKF 245
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
++ + LT L++ R+ D GA + K LRSL I L D GVK I ++ L
Sbjct: 246 ISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 1/183 (0%)
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
E + ++ + L L++SD ++G+ G +H+S + L S+N+ I D + ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L++ I D G+ ++ + LT ++ I + GA + + L SL++ + D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
+GVK I ++ LT LN++ N + D+ +LIS + L SLN+S++ + G++ + +K
Sbjct: 241 SGVKFISEMKQLTSLNIAIN-RVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQ 299
Query: 447 LRS 449
LRS
Sbjct: 300 LRS 302
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 2/180 (1%)
Query: 247 KF-SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
KF S + L SL++ IG+ G +++ + L L + + ++G G + +S + L +
Sbjct: 124 KFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLL 183
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
++S I D ++ ++ + L S N+ I + G +++ + LT LD+ I DSG
Sbjct: 184 DISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGV 243
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
++ K L SL I + D G K I ++ L LN+S N L D+ ++ IS + L S
Sbjct: 244 KFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDN-ELGDEGVKFISEMKQLRS 302
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
++ +S + L S+++S I + + ++ + L SLN+ +I D G ++ + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T LD+ I D G ++ K L S I + + G K I ++ LT L++S N ++
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDN-HIG 239
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
D ++ IS + L SLN++ +R+ G + + +K LRSL +
Sbjct: 240 DSGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNI 281
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 90/182 (49%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I ++ +++LT L++ + +S + L LN+ ++ D+G + S + L
Sbjct: 121 ENIKFISEMKQLTSLDVSDNEIGNVGAKHISEMKQLTSLNICNNRIGDEGAKFISEMQQL 180
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L++ IGD+G+ ++ + L +SD +G+ G + +S + L S+++S I D
Sbjct: 181 TLLDISDNHIGDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGD 240
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
++ ++ + L SLN+ ++ D G ++ + L L++ + D G ++ K L
Sbjct: 241 SGVKFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
Query: 375 RS 376
RS
Sbjct: 301 RS 302
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 24/177 (13%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ D G ++ +Q+LTLL++ +
Sbjct: 148 KHISEMKQLTSLNICNNRIGDEGAKFISEMQQLTLLDISDNHI----------------- 190
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
D G + S + L S N+ IG+ G +++ + L L++SD +G SG+
Sbjct: 191 -------GDKGVKFISEMKQLTSFNISDDLIGNVGAKSISEMQQLTSLDVSDNHIGDSGV 243
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ +S + L S+N++ + D + ++ + L+SLN+ ++ D G+ ++ + L
Sbjct: 244 KFISEMKQLTSLNIAINRVGDEGAKLISEMKQLRSLNISDNELGDEGVKFISEMKQL 300
>gi|242071889|ref|XP_002451221.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
gi|241937064|gb|EES10209.1| hypothetical protein SORBIDRAFT_05g026000 [Sorghum bicolor]
Length = 569
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 200/416 (48%), Gaps = 44/416 (10%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERC 141
L SLD + C + D L + L+ RR +T G+ K G L +L ++ C
Sbjct: 78 LSSLDLSACAGLDDASLAAALPEAPAPLLAVRRCLGVTDVGLAKVAVGCPGLERLSVKWC 137
Query: 142 TRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIA 198
I V L K +L S++I + +T+ ++ LS L L+ + + C + D G+
Sbjct: 138 REISDIGVELLAKKCPQLRSVDISYLK-VTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQ 196
Query: 199 YLK---GLQK---------------LTLLNLEGCPVTAACLDSLSALGS----LFYLNLN 236
L LQ+ LT+L L+G + A+ +L A+GS L + L+
Sbjct: 197 MLSMCNSLQEIETCLLSKLSTIGETLTVLRLDGLEIFAS---NLQAIGSTCKNLVEIGLS 253
Query: 237 RCQ-LSDDGCEKF-SRLTNLESLNLDSCGI-GDEGLVNLTGLC-NLKCLELSDTQ-VGSS 291
+C ++DDG + +L ++++ C + ++ L + C ++CL+L +
Sbjct: 254 KCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCPFISEK 313
Query: 292 GLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG 349
GL ++ L ++L+ I+L+ I+D +L+ LA S L L L I+D GL ++S G
Sbjct: 314 GLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYISSNCG 373
Query: 350 -LTHLDLFGAR-ITDSG-AAYLRNFKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQ 405
L LDL+ ITD G AA K +R L +C +TDAG+KH+ L LT L L
Sbjct: 374 KLVELDLYRCSGITDDGLAAVASGCKKIRVLNLCYCTQITDAGLKHVSALEELTNLELRC 433
Query: 406 NCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHL-KPLKNLRSLTLESCKVT 458
+T + I+ G T L+ L++ + AGL L + +NLR LT+ C+VT
Sbjct: 434 LVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVT 489
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 104/245 (42%), Gaps = 52/245 (21%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +++K ++ I + S L +DL+ + D+ L HL CS L L C ISD GL +
Sbjct: 308 PFISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVY 367
Query: 102 LRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L L R + IT G+ A A G K+ L
Sbjct: 368 ISSNCGKLVELDLYRCSGITDDGLAAVA-----------------------SGCKKIRVL 404
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
N+ +C ITD+ +K +S L L +L++ C ++T GI + GC
Sbjct: 405 NLCYCTQITDAGLKHVSALEELTNLELRCLVRITGIGITSIA----------IGCT---- 450
Query: 220 CLDSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCN 277
SL L+L RC DD G SR + NL L + C + GL +L G +
Sbjct: 451 ---------SLIELDLKRCYSVDDAGLWALSRYSQNLRQLTISYCQVTGLGLCHLLG--S 499
Query: 278 LKCLE 282
L+CL+
Sbjct: 500 LRCLQ 504
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 171/372 (45%), Gaps = 38/372 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D ++++A + L SVD+S VT+ L L L+ + C+ I D GL+ L
Sbjct: 140 ISDIGVELLAKKCPQLRSVDISYLKVTNESLRSLSTLEKLEDIAMVGCLFIDDDGLQMLS 199
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD-LERCTRIHGGLVNLKGL----MKLE 158
++L + + + +++LD LE I NL+ + L
Sbjct: 200 MCNSLQEI-----ETCLLSKLSTIGETLTVLRLDGLE----IFAS--NLQAIGSTCKNLV 248
Query: 159 SLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKV--TDSGIAYLKGLQKLTLLNLEGCP 215
+ + CN ITD + L + +L+++ ++C + D+ A + +K+ L LE CP
Sbjct: 249 EIGLSKCNGITDDGIVSLVAHCCDLRTIDVTCCHLLTNDALAAIAENCRKIECLQLESCP 308
Query: 216 -VTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNL 272
++ L+ ++ L S L ++L C+++D + + + L L L C I DEGLV +
Sbjct: 309 FISEKGLERITTLCSHLKEIDLTDCRINDTALKHLASCSELLILKLGLCSSISDEGLVYI 368
Query: 273 TGLCN-------LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 324
+ C +C ++D + + SG + +NL + T I+D L+ ++ L
Sbjct: 369 SSNCGKLVELDLYRCSGITDDGLAAVA----SGCKKIRVLNLCYCTQITDAGLKHVSALE 424
Query: 325 SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEIC 380
L +L L +IT G+ ++ T L LDL + D+G L + +NLR L I
Sbjct: 425 ELTNLELRCLVRITGIGITSIAIGCTSLIELDLKRCYSVDDAGLWALSRYSQNLRQLTIS 484
Query: 381 GGGLTDAGVKHI 392
+T G+ H+
Sbjct: 485 YCQVTGLGLCHL 496
>gi|254411888|ref|ZP_05025664.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196181610|gb|EDX76598.1| Leucine Rich Repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 415
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 151/288 (52%), Gaps = 23/288 (7%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
SD+ PLS LTNL+SL + +++TD I L L L L L +T C L+ L +L
Sbjct: 86 SDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITDIC--PLTELTNL 141
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L Q++D + LTNLE LNL++ I + L L NLK L L D Q+
Sbjct: 142 TELSLEGNQIAD--VNSLAELTNLEFLNLENNQIT--TISPLAELQNLKRLHLEDNQI-- 195
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ + L+GL NL ++L I+D + L+ ++LK L L QI D ++ L+ LT L
Sbjct: 196 TDISSLAGLQNLTWLHLEDNQITD--ISPLSEFTNLKGLFLVLNQIKD--ISPLSQLTNL 251
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L +I D + L +NL L++ +TD + + L++LT L+L+ N
Sbjct: 252 KALELKFNQIQD--ISPLAELQNLTWLDLEDNQITD--ISPLSGLTNLTFLSLTYN---Q 304
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ + +SGLT L L ++ ++I + L L NL +L+L ++T
Sbjct: 305 IQDVSPLSGLTNLKRLQLNFNQI--QDISPLAELTNLETLSLNGNQIT 350
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 188/387 (48%), Gaps = 76/387 (19%)
Query: 11 FNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
F EL ++ ++S+EA R L L + G ND ++ A SS + L+ +++
Sbjct: 35 FKELCQNQA--DLSVEAGRTV---QLLLAEV-GTND--CELAAENLSSRTELSLNRQEIS 86
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D L L + +NL+SL + QI+D + L L+NL L+ RRN IT + L
Sbjct: 87 D--LSPLSELTNLESLHLDGN-QITD--ICPLTELTNLKYLTLRRN-QIT--DICPLTEL 138
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL +L LE +I + +L L LE LN++ N IT + PL+ L NLK L + +
Sbjct: 139 TNLTELSLE-GNQI-ADVNSLAELTNLEFLNLE-NNQITT--ISPLAELQNLKRLHLEDN 193
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++TD I+ L GLQ LT L+LE +T + L + L LF + LN+ + S
Sbjct: 194 QITD--ISSLAGLQNLTWLHLEDNQITDISPLSEFTNLKGLFLV-LNQIK----DISPLS 246
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS----SGLRHL--------- 296
+LTNL++L L I D + L L NL L+L D Q+ SGL +L
Sbjct: 247 QLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDNQITDISPLSGLTNLTFLSLTYNQ 304
Query: 297 -------SGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSL 329
SGLTNL+ + L+F I D S + L+GL +L +L
Sbjct: 305 IQDVSPLSGLTNLKRLQLNFNQIQDISPLAELTNLETLSLNGNQITDVSPLSGLQNLNAL 364
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLF 356
+L+ QITD ++ L+GLT+L +
Sbjct: 365 SLNGNQITD-----ISPLSGLTNLKVL 386
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 23/203 (11%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +TD + L + +NL+ L F QI D + L L+NL +L + N Q
Sbjct: 212 LEDNQITD--ISPLSEFTNLKGL-FLVLNQIKD--ISPLSQLTNLKALELKFNQI---QD 263
Query: 124 MKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ A L NL LDLE + T I L GL L L++ + D+ PLSGLTN
Sbjct: 264 ISPLAELQNLTWLDLEDNQITDISP----LSGLTNLTFLSLTYNQI---QDVSPLSGLTN 316
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK LQ++ +++ D I+ L L L L+L G +T LS L +L L+LN Q++
Sbjct: 317 LKRLQLNFNQIQD--ISPLAELTNLETLSLNGNQITDVS--PLSGLQNLNALSLNGNQIT 372
Query: 242 DDGCEKFSRLTNLESLNLDSCGI 264
D S LTNL+ L+L I
Sbjct: 373 D--ISPLSGLTNLKVLHLTENPI 393
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
ELS + S L LS LTNLES++L I+D + L L++LK L L QITD +
Sbjct: 77 ELSLNRQEISDLSPLSELTNLESLHLDGNQITD--ICPLTELTNLKYLTLRRNQITD--I 132
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
LT LT LT L L G +I D + L NL L + +T + + +L +L L
Sbjct: 133 CPLTELTNLTELSLEGNQIADVNS--LAELTNLEFLNLENNQIT--TISPLAELQNLKRL 188
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L N +TD + ++GL L L++ +++IT + L NL+ L L
Sbjct: 189 HLEDN-QITD--ISSLAGLQNLTWLHLEDNQIT--DISPLSEFTNLKGLFL 234
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 43/187 (22%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ ++L +++L + + D + L + NL LD QI+D + L GL+NLT LS
Sbjct: 246 SQLTNLKALELKFNQIQD--ISPLAELQNLTWLDLEDN-QITD--ISPLSGLTNLTFLSL 300
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--- 170
N Q + +GL NL +L L +I + L L LE+L++ N ITD
Sbjct: 301 TYNQI---QDVSPLSGLTNLKRLQL-NFNQIQD-ISPLAELTNLETLSLN-GNQITDVSP 354
Query: 171 -----------------SDMKPLSGLTNLKSLQISCSKV-TDSGIAYLKGLQKLTLLNLE 212
+D+ PLSGLTNLK L ++ + + +DS +G Q
Sbjct: 355 LSGLQNLNALSLNGNQITDISPLSGLTNLKVLHLTENPIFSDSS----EGAQP------- 403
Query: 213 GCPVTAA 219
CPV+
Sbjct: 404 TCPVSPP 410
>gi|51850103|dbj|BAD42392.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 621
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 184/420 (43%), Gaps = 27/420 (6%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
+GS ++ GL HL L+SL+ N I+I G L +L SLS I +
Sbjct: 174 TGSAISAEGLAHLAAMP-LKSLNLN-GIEIGVEGARTLATSKSLVSLSLI-GCGIGDRAA 230
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGL--------MKLESLNIKWCNCITDSDMKPL 176
+A A ++ LDL VN+ G L SLN+ + N I D + L
Sbjct: 231 QALAASRSIRSLDLS---------VNMIGCDGAQALADAPLVSLNL-YSNEIGDDGARAL 280
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL++ + + ++G L LNL + L+ SL L+L
Sbjct: 281 ATSQTLTSLELRRNGIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDLG 340
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+L D G + +L SL +D I DEG+ L L+ L+LS VG G L
Sbjct: 341 GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAGAL 400
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G T L +NLS GI+ S LA SL SL L+ +I D G AL + LT LDL
Sbjct: 401 GGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLDLS 460
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I ++GA L + L SL++ G G+ D G + LT L+LSQN ++ L
Sbjct: 461 RNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGARHL 520
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
T L L++S +RI G + L S L + KV N I +R L + S
Sbjct: 521 AQSAT-LAELDLSENRIGPEGAKALS-----LSTVLTTLKVIDNAIGEDGARALADSTSL 574
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 161/364 (44%), Gaps = 5/364 (1%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ +A+ S+ S+DLS + + G L D L SL+ + +I D G L
Sbjct: 224 GIGDRAAQALAAS-RSIRSLDLSVNMIGCDGAQALADAP-LVSLNL-YSNEIGDDGARAL 280
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
LTSL RRN I G AFA L KL+L G L G L L++
Sbjct: 281 ATSQTLTSLELRRN-GIGNAGAGAFANNTVLRKLNLANNMIDKRGARVLAGNTSLTELDL 339
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N + D + L+G +L SL++ ++++D G+ L L L+L V
Sbjct: 340 G-GNRLGDKGARALAGNRSLLSLKVDHNEISDEGVQALAQHATLRSLDLSFNFVGLQGAG 398
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+L L LNL+ C ++ +R +L SL L+ IGD+G L L L+
Sbjct: 399 ALGGNTRLSELNLSLCGINSYSASALARNKSLASLYLNGNRIGDDGARALAKNSTLTLLD 458
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
LS + ++G L G L S+ L+ GI D LA L +L+L +I G
Sbjct: 459 LSRNNIQNAGAEALGGNQALISLKLAGNGIDDDGAAALARHPRLTTLDLSQNRIGSEGAR 518
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L LDL RI GA L L +L++ + + G + + D +SLT L+
Sbjct: 519 HLAQSATLAELDLSENRIGPEGAKALSLSTVLTTLKVIDNAIGEDGARALADSTSLTSLD 578
Query: 403 LSQN 406
+N
Sbjct: 579 ARRN 582
>gi|428212495|ref|YP_007085639.1| hypothetical protein Oscil6304_2053 [Oscillatoria acuminata PCC
6304]
gi|428000876|gb|AFY81719.1| leucine-rich repeat (LRR) protein [Oscillatoria acuminata PCC 6304]
Length = 455
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 148/321 (46%), Gaps = 62/321 (19%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D+ PL+GLTNL+ L++S +K+ D IA L GL L L+L + SL+ L +L
Sbjct: 90 DIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSYNKIEDIA--SLANLNNLK 145
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L + Q+ D + LTNLE L LD IG+ + + L L L LS Q+
Sbjct: 146 FLAIRDNQIED--VAPLTNLTNLEVLWLDENKIGE--VASFASLTQLTQLHLSGNQI--E 199
Query: 292 GLRHLSGLTNLESINLSFTGISDGS--------------------LRKLAGLSSLKSLNL 331
+ L+ LTNLES+ L+ I D + L L GL + L L
Sbjct: 200 DVAPLANLTNLESLWLNENKIKDVASLVSMTKLTQLYLSSNEIEDLAPLKGLPEMAELQL 259
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGA-------AYLRNFKN----------- 373
+ QI + +A L SLT LT L+L +I D +L+ KN
Sbjct: 260 NNNQIVN--VAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPLATL 317
Query: 374 --LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L +L++ + D V + L++LT L L +N K + ++ LT L SL++SN+
Sbjct: 318 TKLETLQLLYNEIKD--VAPLASLTNLTFLTLGEN---QIKDVAPLASLTELTSLDLSNN 372
Query: 432 RITSAGLRHLKPLKNLRSLTL 452
I + + PL NL LT
Sbjct: 373 EI-----KDIDPLANLTQLTF 388
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 170/358 (47%), Gaps = 37/358 (10%)
Query: 46 DKWMDVIASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
D+ D+ G ++L ++LS + + D + L +NL+ LD ++ +E +
Sbjct: 86 DEIKDIAPLAGLTNLEWLELSYNKIED--IAPLAGLTNLEWLDLSY------NKIEDIAS 137
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIK 163
L+NL +L F AI ++ A L NL L++ G + + L +L L++
Sbjct: 138 LANLNNLKFL---AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLS 194
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I D+ PL+ LTNL+SL ++ +K+ D +A L + KLT L L + L
Sbjct: 195 -GNQI--EDVAPLANLTNLESLWLNENKIKD--VASLVSMTKLTQLYLSSNEIED--LAP 247
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L L + L LN Q+ + + LTNL +L L+ I D + L L L L+L
Sbjct: 248 LKGLPEMAELQLNNNQIVN--VAPLASLTNLTTLELNENQIKD--IAPLASLTQLGFLQL 303
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ Q+ + L+ LT LE++ L + I D + LA L++L L L QI D +A
Sbjct: 304 TKNQI--VNISPLATLTKLETLQLLYNEIKD--VAPLASLTNLTFLTLGENQIKD--VAP 357
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L SLT LT LDL I D L N L L L+D +K + L+SLT L
Sbjct: 358 LASLTELTSLDLSNNEIKDIDP--LANLTQLTFLH-----LSDNQIKDVAPLASLTQL 408
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 146/320 (45%), Gaps = 37/320 (11%)
Query: 27 AFRDCALQDLC-LGQYPGVNDKWMDV-----IASQGS--SLLSVDLSGSDVTDSGLIHLK 78
A RD ++D+ L + W+D +AS S L + LSG+ + D L
Sbjct: 148 AIRDNQIEDVAPLTNLTNLEVLWLDENKIGEVASFASLTQLTQLHLSGNQIEDVA--PLA 205
Query: 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ +NL+SL N +I D L ++ LT L N + + GL + +L L
Sbjct: 206 NLTNLESLWLNEN-KIKDVA--SLVSMTKLTQLYLSSNEI---EDLAPLKGLPEMAELQL 259
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
+ +VN+ L L +L N D+ PL+ LT L LQ++ +++ + S +
Sbjct: 260 N-----NNQIVNVAPLASLTNLTTLELNENQIKDIAPLASLTQLGFLQLTKNQIVNISPL 314
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
A L L+ L LL E V L++L +L +L L Q+ D + LT L SL
Sbjct: 315 ATLTKLETLQLLYNEIKDVAP-----LASLTNLTFLTLGENQIKD--VAPLASLTELTSL 367
Query: 258 NLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
+L + I D + L NLT L L LSD Q+ + L+ LT L+ ++L I D
Sbjct: 368 DLSNNEIKDIDPLANLTQLT---FLHLSDNQI--KDVAPLASLTQLKHLHLRNNEIKD-- 420
Query: 317 LRKLAGLSSLKSLNLDARQI 336
+ +L L+ + + ++D I
Sbjct: 421 IARLPNLTQMDNFSVDGNPI 440
>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]
Length = 1262
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 121/423 (28%), Positives = 192/423 (45%), Gaps = 30/423 (7%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DLSG ++ NLQ L+ + C ++ + E L NL +L+
Sbjct: 756 LRTIDLSGCKKLETFPESFGSLENLQILNLSNCFEL-ESLPESFGSLKNLQTLNLVECKK 814
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + ++ GL NL LD C ++ +L GL L++L + C+ + S +K L
Sbjct: 815 LESLP-ESLGGLKNLQTLDFSVCHKLESVPESLGGLNNLQTLKLSVCDNLV-SLLKSLGS 872
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S K +S L L+ L +LNL C + +SL L +L LN++ C
Sbjct: 873 LKNLQTLDLSGCKKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWC 932
Query: 239 -----------------QLSDDGCEKFSRLT-------NLESLNLDSCGIGDEGLVNLTG 274
+L GC K L NLE+LNL C + +L G
Sbjct: 933 TELVFLPKNLGNLKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGG 992
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L NL+ L+L S L GL NL+++ LSF + L GL +L++L L
Sbjct: 993 LQNLQTLDLLVCHKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVC 1052
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ +L SL L L L S L + KNL +L + ++ + +
Sbjct: 1053 DKLESLPESLGSLKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGS 1112
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLE 453
L +L +LNLS NC + + + L L +L +S +R+ S ++L LKNL++L L
Sbjct: 1113 LENLQILNLS-NCFKLESIPKSLGSLKNLQTLILSWCTRLVSLP-KNLGNLKNLQTLDLS 1170
Query: 454 SCK 456
CK
Sbjct: 1171 GCK 1173
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 180/398 (45%), Gaps = 14/398 (3%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAIT 120
+DLSG + D L+ L+ ++ D E + LS L L+ + I
Sbjct: 569 LDLSGCSIKDFA----SALGQLKQLEVLIAQKLQDRQFPESITRLSKLHYLNLSGSRGI- 623
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++ + L++LV LDL CT + L L L++L++ WC + +S + L +
Sbjct: 624 SEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDLSWCEKL-ESLPESLGSVQ 682
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NL+ L +S ++ L L+ + L+L C + +SL +L ++ L+L+RC
Sbjct: 683 NLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPESLGSLKNVQTLDLSRCYK 742
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+ RL NL +++L C + + L NL+ L LS+ S L
Sbjct: 743 LVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNLSNCFELESLPESFGSLK 802
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
NL+++NL + L GL +L++L+ + + SL GL +L +
Sbjct: 803 NLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLE---SVPESLGGLNNLQTLKLSV 859
Query: 361 TDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
D+ + L+ + KNL++L++ G ++ + + L +L +LNLS NC + E +
Sbjct: 860 CDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQILNLS-NCFKLESLPESL 918
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L +LN+S ++L LKNL L L C
Sbjct: 919 GRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGC 956
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 178/421 (42%), Gaps = 50/421 (11%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NLQ+LDF+ C ++ + E L GL+NL +L + + + +K+ L NL LDL C
Sbjct: 827 NLQTLDFSVCHKL-ESVPESLGGLNNLQTLKLSVCDNLVSL-LKSLGSLKNLQTLDLSGC 884
Query: 142 TRIH------GGLVNLKGL-----MKLESL-------------NIKWCN----------- 166
++ G L NL+ L KLESL NI WC
Sbjct: 885 KKLESLPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGN 944
Query: 167 -----------CIT-DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
C+ +S L L NL++L +S +S L GLQ L L+L C
Sbjct: 945 LKNLPRLDLSGCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVC 1004
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ +SL L +L L L+ C + E L NL++L L C + +L
Sbjct: 1005 HKLESLPESLGGLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLGS 1064
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L NL L+L S L + NL ++NLS + + L +L+ LNL
Sbjct: 1065 LKNLHTLKLQVCYKLKSLPESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQILNLSNC 1124
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
++ +L SL L L L S L N KNL++L++ G ++ +
Sbjct: 1125 FKLESIPKSLGSLKNLQTLILSWCTRLVSLPKNLGNLKNLQTLDLSGCKKLESLPDSLGS 1184
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
L +L LNLS NC + E++ L L +LN+ + L LK+L++L L
Sbjct: 1185 LENLQTLNLS-NCFKLESLPEILGSLKKLQTLNLFRCGKLESLPESLGSLKHLQTLVLID 1243
Query: 455 C 455
C
Sbjct: 1244 C 1244
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 6/375 (1%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLER 140
NLQ+LD ++C ++ + E L + NL L+ +N + + ++ L ++ LDL
Sbjct: 659 NLQTLDLSWCEKL-ESLPESLGSVQNLQRLNL--SNCFELEALPESLGSLKDVQTLDLSS 715
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C ++ +L L +++L++ C + S K L L NL+++ +S K ++
Sbjct: 716 CYKLESLPESLGSLKNVQTLDLSRCYKLV-SLPKNLGRLKNLRTIDLSGCKKLETFPESF 774
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L+ L +LNL C + +S +L +L LNL C+ + E L NL++L+
Sbjct: 775 GSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFS 834
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
C + +L GL NL+ L+LS S L+ L L NL++++LS + L
Sbjct: 835 VCHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESL 894
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L +L+ LNL ++ +L L L L++ L N KNL L++
Sbjct: 895 GSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLS 954
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
G ++ + L +L LNLS+ C + E + GL L +L++ +
Sbjct: 955 GCMKLESLPDSLGSLENLETLNLSK-CFKLESLPESLGGLQNLQTLDLLVCHKLESLPES 1013
Query: 441 LKPLKNLRSLTLESC 455
L LKNL++L L C
Sbjct: 1014 LGGLKNLQTLQLSFC 1028
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 158/356 (44%), Gaps = 28/356 (7%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT-DSDMKPLSGLTNLK 183
KA L NL LDL C ++ +L + L+ LN+ NC ++ + L L +++
Sbjct: 652 KALGILRNLQTLDLSWCEKLESLPESLGSVQNLQRLNLS--NCFELEALPESLGSLKDVQ 709
Query: 184 SLQI-SCSKVT--DSGIAYLKGLQKLTL---------------------LNLEGCPVTAA 219
+L + SC K+ + LK +Q L L ++L GC
Sbjct: 710 TLDLSSCYKLESLPESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKLET 769
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+S +L +L LNL+ C + E F L NL++LNL C + +L GL NL+
Sbjct: 770 FPESFGSLENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQ 829
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+ S S L GL NL+++ LS L+ L L +L++L+L + ++
Sbjct: 830 TLDFSVCHKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLES 889
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+L SL L L+L +S L KNL++L I K++ +L +L
Sbjct: 890 LPESLGSLENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLP 949
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L+LS C + + + L L +LN+S + L L+NL++L L C
Sbjct: 950 RLDLS-GCMKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVC 1004
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 175/397 (44%), Gaps = 4/397 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++DLS + +S L NLQ L+ + C ++ + E L L ++ +L
Sbjct: 660 LQTLDLSWCEKLESLPESLGSVQNLQRLNLSNCFEL-EALPESLGSLKDVQTLDLSSCYK 718
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ + ++ L N+ LDL RC ++ NL L L ++++ C + ++ +
Sbjct: 719 LESLP-ESLGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKL-ETFPESFGS 776
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL+ L +S +S L+ L LNL C + +SL L +L L+ + C
Sbjct: 777 LENLQILNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVC 836
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ E L NL++L L C L +L L NL+ L+LS + S L
Sbjct: 837 HKLESVPESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGS 896
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L NL+ +NLS + L L +L++LN+ L +L L LDL G
Sbjct: 897 LENLQILNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGC 956
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+S L + +NL +L + ++ + + L +L L+L C+ + E +
Sbjct: 957 MKLESLPDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLV-CHKLESLPESLG 1015
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
GL L +L +S + L LKNL++LTL C
Sbjct: 1016 GLKNLQTLQLSFCHKLESLPESLGGLKNLQTLTLSVC 1052
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 1/281 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
++ L+ L L +S S+ + + L L L+L C +L L +L L+L
Sbjct: 606 ITRLSKLHYLNLSGSRGISEIPSSVGKLVSLVHLDLSYCTNVKVIPKALGILRNLQTLDL 665
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
+ C+ + E + NL+ LNL +C + +L L +++ L+LS S
Sbjct: 666 SWCEKLESLPESLGSVQNLQRLNLSNCFELEALPESLGSLKDVQTLDLSSCYKLESLPES 725
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L L N+++++LS + L L +L++++L + +T + SL L L+L
Sbjct: 726 LGSLKNVQTLDLSRCYKLVSLPKNLGRLKNLRTIDLSGCKKLETFPESFGSLENLQILNL 785
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+S + KNL++L + ++ + + L +L L+ S C+ + E
Sbjct: 786 SNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSV-CHKLESVPE 844
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+ GL L +L +S + L+ L LKNL++L L CK
Sbjct: 845 SLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCK 885
>gi|290993787|ref|XP_002679514.1| predicted protein [Naegleria gruberi]
gi|284093131|gb|EFC46770.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 133/301 (44%), Gaps = 52/301 (17%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+T LKSL + + + D G+ ++ L KL L L C +T+ L + SL L+L+
Sbjct: 1 ITTLKSLNLHHNNIEDEGVEFISDL-KLESLGLCRCALTSKSTSFLCKITSLKKLDLSEN 59
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGI-------------------------GDEGLVNLT 273
++D+ S LT+LE L+L I +E ++ L+
Sbjct: 60 IINDECGFYLSMLTDLEELDLHDNSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLS 119
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+LK L LS +G S + HLS LTNL+ + L+ I+ G L + L L+ L +
Sbjct: 120 QTVSLKSLNLSQNNIGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQ 178
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+ L+ L L L +FG + + ++ N K LR+LE+ + DAG
Sbjct: 179 NSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAG----- 233
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L+SL SGL L L + ++RIT G++HL +K L L L
Sbjct: 234 -LASL-------------------SGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLN 273
Query: 454 S 454
S
Sbjct: 274 S 274
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 5/254 (1%)
Query: 155 MKLESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KLESL + C C +T L +T+LK L +S + + D YL L L L+L
Sbjct: 25 LKLESLGL--CRCALTSKSTSFLCKITSLKKLDLSENIINDECGFYLSMLTDLEELDLHD 82
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SRLTNLESLNLDSCGIGDEGLVNL 272
+ C S+L L L L + ++S + + S+ +L+SLNL IG ++L
Sbjct: 83 NSIEGKCFKEFSSLKKLKTLKLCQNRISQEEAMIYLSQTVSLKSLNLSQNNIGQSS-IHL 141
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+ L NLK LEL+ ++ GL S L LE + +S + +L+ L L+ L++
Sbjct: 142 SNLTNLKELELNLCKITKGGLSFFSNLKKLEILKISQNSLGYDDFEELSHLVRLRILSIF 201
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ + ++ L +L++F I D+G A L NL+ L++ +TD G++H+
Sbjct: 202 GCGLEKNSTNFIGNIKTLRNLEMFSNNIYDAGLASLSGLVNLQILKLDSTRITDTGIQHL 261
Query: 393 KDLSSLTLLNLSQN 406
+ L +L L+ N
Sbjct: 262 SQMKELEILRLNSN 275
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
++ L + L+SLN+ N I S + LS LTNLK L+++ K+T G+++ L+KL
Sbjct: 114 AMIYLSQTVSLKSLNLSQNN-IGQSSI-HLSNLTNLKELELNLCKITKGGLSFFSNLKKL 171
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+L + + + LS L L L++ C L + + L +L + S I D
Sbjct: 172 EILKISQNSLGYDDFEELSHLVRLRILSIFGCGLEKNSTNFIGNIKTLRNLEMFSNNIYD 231
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
GL +L+GL NL+ L+L T++ +G++HLS + LE + L+ + + +L
Sbjct: 232 AGLASLSGLVNLQILKLDSTRITDTGIQHLSQMKELEILRLNSNSLGNETL 282
>gi|343414369|emb|CCD21014.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 469
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 194/376 (51%), Gaps = 42/376 (11%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ L + C I+D + L LS+L +L IT + + L N V+LDL CT
Sbjct: 45 LEKLYLSHCTGITD--VPPLSKLSSLRTLDISHCTGIT--DVSPLSKLNNFVQLDLSHCT 100
Query: 143 RIHGGLVNLKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYL 200
G+ ++ L L SL + + +C +D+ PLS L++L++L +S C+ + ++ L
Sbjct: 101 ----GITDVSPLSVLSSLRMLFFSHCTGITDVSPLSVLSSLRTLDLSYCTGI--KHVSPL 154
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L L L+L C + LS L SL L+L+ C S+L++L +L+L
Sbjct: 155 SKLSSLEKLDLSHCTAIKH-VSPLSKLSSLCTLDLSYCTGIKHE-SPLSKLSSLRTLDLS 212
Query: 261 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLR 318
C GI D + L+ L +L+ L+LS G + + LS L++L +++LS TGI+D S
Sbjct: 213 HCTGITD--VSPLSELSSLRTLDLSHCT-GITDVSPLSELSSLRTLDLSHCTGITDVS-- 267
Query: 319 KLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRS 376
L+ LSSL++L+L ITD ++ L+ L+ L LDL ITD + L +LR
Sbjct: 268 PLSKLSSLRTLDLSHCTGITD--VSPLSELSSLRTLDLSHCTGITD--VSPLSELSSLRM 323
Query: 377 LEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G+TD V + +LSSL +L+LS +TD +S L+ L SL++
Sbjct: 324 LYLSHCTGITD--VSPLSELSSLRMLDLSHCTGITD-----VSPLSELSSLHI------- 369
Query: 436 AGLRHLKPLKNLRSLT 451
GL H + ++ LT
Sbjct: 370 LGLSHCTGITDVSPLT 385
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD L + S+L++LD +
Sbjct: 251 SLRTLDLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITDVS--PLSELSSLRTLDLSH 305
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C I+D + L LS+L L IT + + L +L LDL CT G+ +
Sbjct: 306 CTGITD--VSPLSELSSLRMLYLSHCTGIT--DVSPLSELSSLRMLDLSHCT----GITD 357
Query: 151 LKGLMKLESLNI-KWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD 194
+ L +L SL+I +C +D+ PL+ + + L +S C+ +TD
Sbjct: 358 VSPLSELSSLHILGLSHCTGITDVSPLTTIIGFEKLYLSNCTGITD 403
>gi|325111037|ref|YP_004272105.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
gi|324971305|gb|ADY62083.1| hypothetical protein Plabr_4512 [Planctomyces brasiliensis DSM
5305]
Length = 407
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 148/290 (51%), Gaps = 12/290 (4%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ +S S ++D + LK +L +L L +T + LD LS++ SL L+L + D+
Sbjct: 103 VDLSLSNISDDSLDSLKDFNRLEVLILAHTRITGSRLDQLSSITSLHTLDLTAIEFDDES 162
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQ-VGSSGLRHLSGLTNL 302
+ L L+ L + + + ++G L T + L+ L+LS + V +S L HL+ + L
Sbjct: 163 VPSLASLRQLQRLKVPTSKLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRL 222
Query: 303 ESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL----FG 357
+ +SF I D ++ LAGL +LK L+L+ IT AAL +LT L L L F
Sbjct: 223 NVLGVSFAKNIDDDAIPLLAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFN 282
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
A T + LR+ K L +L C +K ++ +S L + L +N NLTD L+ +
Sbjct: 283 APQTLESLSKLRSLKQL-NLNDCKNI---TSLKFLRGMSHLEAIGL-KNTNLTDAILKEL 337
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L ++++ RI + + LK L++++L ++ +++I ++S
Sbjct: 338 QYCLQLKYVDLTRCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPIRS 387
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 29/216 (13%)
Query: 59 LLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
L S+DLSG V +S L HL L L +F I D + L GL L LS
Sbjct: 197 LRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPLLAGLPALKWLSLE-GT 255
Query: 118 AITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+IT A L NL L L CT L +L L L+ LN+ C IT +K L
Sbjct: 256 SITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLNLNDCKNITS--LKFL 313
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
G+++L+++ + + +TD A LK LQ CL L Y++L
Sbjct: 314 RGMSHLEAIGLKNTNLTD---AILKELQ--------------YCL-------QLKYVDLT 349
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
RC++ + S+L L++++L I + ++ +
Sbjct: 350 RCRIGKETISTISQLKLLQTISLSGTQIDSDNIIPI 385
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 136/322 (42%), Gaps = 61/322 (18%)
Query: 26 EAFRDCALQDL-CL-GQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNL 83
E++RD + +L C +P + + + V Q + VDLS S+++D L LKD + L
Sbjct: 68 ESYRDASTLELDCRRAHFPDGSLELLKVFEKQT---VIVDLSLSNISDDSLDSLKDFNRL 124
Query: 84 QSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA--QGMKAFAGLINLVKLDLER- 140
+ L +I+ L+ L +++L +L AI + + + A L L +L +
Sbjct: 125 EVLILAHT-RITGSRLDQLSSITSLHTLDL---TAIEFDDESVPSLASLRQLQRLKVPTS 180
Query: 141 ----------CTRI---------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
CTR+ + L +L + +L L + + I D +
Sbjct: 181 KLSEDGFALLCTRMPFLRSLDLSGRRGVANSWLTHLAKMPRLNVLGVSFAKNIDDDAIPL 240
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLN 234
L+GL LK L + + +T A L L L L+L C A L+SLS L SL LN
Sbjct: 241 LAGLPALKWLSLEGTSITGMFPAALGNLTNLDTLSLAHCTFNAPQTLESLSKLRSLKQLN 300
Query: 235 LNRCQ-----------------------LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
LN C+ L+D ++ L+ ++L C IG E +
Sbjct: 301 LNDCKNITSLKFLRGMSHLEAIGLKNTNLTDAILKELQYCLQLKYVDLTRCRIGKETIST 360
Query: 272 LTGLCNLKCLELSDTQVGSSGL 293
++ L L+ + LS TQ+ S +
Sbjct: 361 ISQLKLLQTISLSGTQIDSDNI 382
>gi|300697280|ref|YP_003747941.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
gi|299074004|emb|CBJ53541.1| leucine-rich-repeat type III effector protein (GALA2) [Ralstonia
solanacearum CFBP2957]
Length = 1051
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 178/393 (45%), Gaps = 11/393 (2%)
Query: 82 NLQSLDFNFCI--QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
+++ LD + C +S+ GL L L SL R I + ++A A +L L+L
Sbjct: 648 SVRHLDLSGCTGAAVSEAGLADL-ARRPLASLDLSRTR-IGDREVQALASSASLTSLNLS 705
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
G L L SLN+ N I D+ ++ L+G +L SL++ ++ ++GIA
Sbjct: 706 GNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALAGSRSLTSLELRGIRIGEAGIAA 764
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L L++ ++ L+ +L L N C L++ ++ +R+ +L +L +
Sbjct: 765 LASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKANDCGLTNGMAQQLARIRSLRTLEV 824
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
S IGD G++ + +L+ L LS + GLR L L S+++S G D
Sbjct: 825 GSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRPLELSRTLTSLDVSRIGCGDRGALL 884
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ +L SL L I G LT+ L LDL G I + A L + L SL +
Sbjct: 885 LSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDLRGNTIDVAAATALAHTGRLGSLNV 944
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
L D + + +LT L++S N L+ + ++G L SLN+S++ I G +
Sbjct: 945 SDCKLDDEAASALAESLTLTALDVSMN-RLSSQAARALAGNATLTSLNISHNHIGPDGAQ 1003
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L S +L ANDI +R L N
Sbjct: 1004 ALA-----ESTSLTFLDARANDIGEAGARALEN 1031
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 154/354 (43%), Gaps = 31/354 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + +AS +SL S++LSG+ + D+G L + L SL+ + I D G++ L
Sbjct: 685 IGDREVQALASS-ASLTSLNLSGNRIGDAGAQALGRNTVLTSLNVS-ANPIGDTGVQALA 742
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G +LTSL R I G+ A A L LD+ L L SL
Sbjct: 743 GSRSLTSLEL-RGIRIGEAGIAALASNTVLRSLDISSNDLSEQSAAELARNQTLTSLKAN 801
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C +T+ + L+ + +L++L++ + + D+G+ + L LNL P+T L
Sbjct: 802 DCG-LTNGMAQQLARIRSLRTLEVGSNSIGDTGVLAIARNASLRTLNLSHNPITLQGLRP 860
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L +L L+++R D G S+ L SL L GIG G LT L L+L
Sbjct: 861 LELSRTLTSLDVSRIGCGDRGALLLSKNRALTSLKLGFNGIGSAGAQGLTANRTLISLDL 920
Query: 284 SDTQV---GSSGLRHLSGLTNLE---------------------SINLSFTGISDGSLRK 319
+ ++ L H L +L ++++S +S + R
Sbjct: 921 RGNTIDVAAATALAHTGRLGSLNVSDCKLDDEAASALAESLTLTALDVSMNRLSSQAARA 980
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
LAG ++L SLN+ I G AL T LT LD AR D G A R +N
Sbjct: 981 LAGNATLTSLNISHNHIGPDGAQALAESTSLTFLD---ARANDIGEAGARALEN 1031
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL-- 254
++ L LT L L+G +T A L +L A +L +L+L+ C S E + L L
Sbjct: 99 LSELHHYPNLTSLQLKGN-LTLADLKALPA--TLRHLDLSACTGSAKSSEAIAYLAGLPL 155
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
ESLN+ IGD G L +L+ L ++ +G++G R L+ L S++LS GI D
Sbjct: 156 ESLNVAGADIGDGGARLLAANPSLRALNAANGGIGAAGARALAESPVLTSLDLSQNGIGD 215
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-----AAYLR 369
R LAG SL +L + +TD G AL LT LDL G IT++G AAY R
Sbjct: 216 EGARALAGSRSLTNLAVLNCLVTDVGARALAGNRTLTALDL-GNLITETGNELEQAAYDR 274
Query: 370 NF--------------KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
++L SL I G DAGV+ + S+LT LN++ TD TLE
Sbjct: 275 TANEITAQGAWALAQNRSLTSLSIQGNLCGDAGVQALAGSSTLTSLNVA----YTDMTLE 330
>gi|21674346|ref|NP_662411.1| Rab family protein [Chlorobium tepidum TLS]
gi|21647522|gb|AAM72753.1| Rab family protein [Chlorobium tepidum TLS]
Length = 1102
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 157/319 (49%), Gaps = 30/319 (9%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ ++ L L SL++ W SD+ PL L +L LQ+S +++TD IA L L+ LT
Sbjct: 97 ITDIAPLASLNSLSMLWLFGNKISDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 154
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
L+L G ++ L +L SL L+L+ Q++D + L +L L+L S I D
Sbjct: 155 ELSLSGNNISDIA--PLESLKSLTELSLSSNQITD--IAPLASLKSLTELSLSSNQISD- 209
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L L +L L+LS Q+ S + L L +L + LS I+D + LA L SL
Sbjct: 210 -IAPLESLKSLTELQLSRNQI--SDIAPLESLKSLTELQLSSNQITD--IAPLASLKSLT 264
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L L QI+D +A L SL L+ L L G +ITD A L + +L LE+ +TD
Sbjct: 265 ELQLSRNQISD--IAPLESLNSLSKLWLNGNQITD--IAPLASLNSLTELELSSNQITD- 319
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKN 446
+ + L SL+ L LS N IS + L SL + S+ + + PL +
Sbjct: 320 -IAPLASLKSLSTLWLSSNQ---------ISDIAPLASLESLSELSLSSNQISDISPLAS 369
Query: 447 LRSLTLESCKVTANDIKRL 465
L SLT V N IKRL
Sbjct: 370 LNSLT--GFDVRRNPIKRL 386
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 138/283 (48%), Gaps = 35/283 (12%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++TD I+ L L L++L L+ +T L++L SL L L ++SD
Sbjct: 73 NQITD--ISPLASLNSLSMLWLDRNQITDIA--PLASLNSLSMLWLFGNKISD--IAPLE 126
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL-ELSDTQVGSSGLRHLSGLTNLESINLS 308
L +L L L S I D + L +LK L ELS + S + L L +L ++LS
Sbjct: 127 SLKSLTELQLSSNQITD-----IAPLASLKSLTELSLSGNNISDIAPLESLKSLTELSLS 181
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I+D + LA L SL L+L + QI+D +A L SL LT L L +I+D A L
Sbjct: 182 SNQITD--IAPLASLKSLTELSLSSNQISD--IAPLESLKSLTELQLSRNQISD--IAPL 235
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN- 427
+ K+L L++ +TD + + L SLT L LS+N IS + L SLN
Sbjct: 236 ESLKSLTELQLSSNQITD--IAPLASLKSLTELQLSRNQ---------ISDIAPLESLNS 284
Query: 428 VSNSRITSAGLRHLKPLKNLRSLT---LESCKVTANDIKRLQS 467
+S + + + PL +L SLT L S ++T DI L S
Sbjct: 285 LSKLWLNGNQITDIAPLASLNSLTELELSSNQIT--DIAPLAS 325
>gi|332030619|gb|EGI70307.1| F-box/LRR-repeat protein 14 [Acromyrmex echinatior]
Length = 837
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 142/270 (52%), Gaps = 32/270 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
V D + IA +L ++L G ++T++GL+ + L+ LD C +SD G+ H
Sbjct: 542 VTDTSLSRIAQFLKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAH 601
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-GLMKLES 159
L GL N TA G A L L L+ C R+ L ++ GL L+S
Sbjct: 602 LAGL-----------NRETADGNLA------LEHLSLQDCQRLSDEALRHVSLGLTTLKS 644
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVT 217
+N+ +C CITDS +K L+ +++L+ L + SC ++D G+AYL +G ++T L++ C
Sbjct: 645 INLSFCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKI 704
Query: 218 A--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLT- 273
A + L +L L+L+ CQ+SD+G K + LE+LN+ C + D GL +
Sbjct: 705 GDQALVHISQGLFNLKSLSLSACQISDEGICKIA----LETLNIGQCSRLTDRGLHTVAE 760
Query: 274 GLCNLKCLELSD-TQVGSSGLRHLSGLTNL 302
+ NLKC++L T++ +SGL + L L
Sbjct: 761 SMKNLKCIDLYGCTKITTSGLERIMKLPQL 790
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 162/326 (49%), Gaps = 62/326 (19%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL- 200
LKG+ LE+LN+ C ITD SG+TN L L +S C +VTD+ ++ +
Sbjct: 498 LKGVPNLEALNLSGCYNITD------SGITNAFCQEYPSLIELNLSLCKQVTDTSLSRIA 551
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNL 259
+ L+ L L L GC C +++ G + L L+ L+L
Sbjct: 552 QFLKNLEHLELGGC-----------------------CNITNTGLLLIAWGLKKLKRLDL 588
Query: 260 DSCG-IGDEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLS 308
SC + D G+ +L GL L+ L L D Q + LRH+S GLT L+SINLS
Sbjct: 589 RSCWHVSDLGIAHLAGLNRETADGNLALEHLSLQDCQRLSDEALRHVSLGLTTLKSINLS 648
Query: 309 F-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSG 364
F I+D ++ LA +SSL+ LNL + I+D G+A L + +T LD+ F +I D
Sbjct: 649 FCVCITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRITSLDVSFCDKIGDQA 708
Query: 365 AAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTG 422
++ + NL+SL + ++D G+ I +L LN+ Q LTD+ L ++ +
Sbjct: 709 LVHISQGLFNLKSLSLSACQISDEGICKI----ALETLNIGQCSRLTDRGLHTVAESMKN 764
Query: 423 LVSLNVSN-SRITSAGLRHLKPLKNL 447
L +++ ++IT++GL + L L
Sbjct: 765 LKCIDLYGCTKITTSGLERIMKLPQL 790
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 60/280 (21%)
Query: 200 LKGLQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSR- 250
LKG+ L LNL GC A C + SL LNL+ C Q++D + ++
Sbjct: 498 LKGVPNLEALNLSGCYNITDSGITNAFCQE----YPSLIELNLSLCKQVTDTSLSRIAQF 553
Query: 251 LTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINL 307
L NLE L L C I + GL+ + GL LK L+L S V G+ HL+GL N E+
Sbjct: 554 LKNLEHLELGGCCNITNTGLLLIAWGLKKLKRLDLRSCWHVSDLGIAHLAGL-NRET--- 609
Query: 308 SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFGARITDSGA 365
+DG+L +L+ L+L D ++++D L ++ LT L ++L
Sbjct: 610 -----ADGNL-------ALEHLSLQDCQRLSDEALRHVSLGLTTLKSINL---------- 647
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLV 424
S +C +TD+GVKH+ +SSL LNL N++D + L G + +
Sbjct: 648 ----------SFCVC---ITDSGVKHLARMSSLRELNLRSCDNISDIGMAYLAEGGSRIT 694
Query: 425 SLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
SL+VS +I L H+ + L NL+SL+L +C+++ I
Sbjct: 695 SLDVSFCDKIGDQALVHISQGLFNLKSLSLSACQISDEGI 734
>gi|241575665|ref|XP_002403227.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
gi|215502182|gb|EEC11676.1| F-box/LRR-repeat protein, putative [Ixodes scapularis]
Length = 411
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 145/290 (50%), Gaps = 29/290 (10%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFN 89
+L +L L + D + IA L +DL G S+V+++GL+ + NL+SL+
Sbjct: 123 SLSELNLSMCKQITDNSLGRIAQHLKGLERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLR 182
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C +SD G+ HL G++ +A G + L L L+ C ++ +
Sbjct: 183 SCRGVSDPGIGHLAGMTP-----------------EAAHGTLRLEALCLQDCQKLTDDAL 225
Query: 150 NLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQK 205
GL L SLN+ +C +TD+ +K + + L+ L + SC ++D G+AYL +G +
Sbjct: 226 RFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSR 285
Query: 206 LTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSC 262
L L++ C L + L L L+LN C +SDDG + +R L +L +L+L C
Sbjct: 286 LCALDVSFCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQC 345
Query: 263 G-IGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 309
G + D+GL + L L+C++L T++ + GL L L +L +NL
Sbjct: 346 GRVTDKGLSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGL 395
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 51/328 (15%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIA----YLKGL 203
++G+ LE+LN+ C +TD+ + + + +L L +S C ++TD+ + +LKGL
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC- 262
++ L+L GC + L A G L NL SLNL SC
Sbjct: 151 ER---LDLGGCSNVSNTGLLLVAWG----------------------LKNLRSLNLRSCR 185
Query: 263 GIGDEGLVNLTGLC--------NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TG 311
G+ D G+ +L G+ L+ L L D Q + LR +S GL +L S+NLSF
Sbjct: 186 GVSDPGIGHLAGMTPEAAHGTLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCAS 245
Query: 312 ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL 368
++D L+ A + L+ LNL + I+D GLA L + L LD+ F ++ D G +
Sbjct: 246 VTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVSFCDKVGDQGLLHA 305
Query: 369 -RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVS 425
+ LRSL + ++D G+ + + L L L+L Q +TDK L LI+ L L
Sbjct: 306 SQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKGLSLIADHLKQLRC 365
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+++ ++IT+ GL L L +L L L
Sbjct: 366 IDLYGCTKITTVGLERLMQLPHLGVLNL 393
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLE 139
++L+SL+ +FC ++D GL+H + L L+ R + I+ G+ A G L LD+
Sbjct: 233 ADLRSLNLSFCASVTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292
Query: 140 RCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSG 196
C ++ G L +GL +L SL++ C D + L +L +L + C +VTD G
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRVARSLGDLHTLHLGQCGRVTDKG 352
Query: 197 IAYLK-GLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQ 239
++ + L++L ++L GC +T L+ L L L LNL Q
Sbjct: 353 LSLIADHLKQLRCIDLYGCTKITTVGLERLMQLPHLGVLNLGLWQ 397
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 28/183 (15%)
Query: 296 LSGLTNLESIN------LSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-L 347
+ G+ NLE++N L+ T +S ++ + SL LNL +QITD L + L
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDV---HSLSELNLSMCKQITDNSLGRIAQHL 147
Query: 348 TGLTHLDLFG-ARITDSG---AAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLS------ 396
GL LDL G + ++++G A+ KNLRSL + G++D G+ H+ ++
Sbjct: 148 KGLERLDLGGCSNVSNTGLLLVAW--GLKNLRSLNLRSCRGVSDPGIGHLAGMTPEAAHG 205
Query: 397 SLTLLNLS-QNCN-LTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTL 452
+L L L Q+C LTD L +S GL L SLN+S + +T AGL+H + LR L L
Sbjct: 206 TLRLEALCLQDCQKLTDDALRFVSLGLADLRSLNLSFCASVTDAGLKHAARMPRLRELNL 265
Query: 453 ESC 455
SC
Sbjct: 266 RSC 268
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 50/278 (17%)
Query: 200 LKGLQKLTLLNLEGC-PVTAACLDS--LSALGSLFYLNLNRC-QLSDDGCEKFSR-LTNL 254
++G+ L LN+ GC +T L + + SL LNL+ C Q++D+ + ++ L L
Sbjct: 91 IQGVPNLEALNMIGCFNLTDTWLSHAFVQDVHSLSELNLSMCKQITDNSLGRIAQHLKGL 150
Query: 255 ESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTG 311
E L+L C + + GL+ + GL NL+ L L + V G+ HL+G+T
Sbjct: 151 ERLDLGGCSNVSNTGLLLVAWGLKNLRSLNLRSCRGVSDPGIGHLAGMT---------PE 201
Query: 312 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ G+LR L++L L D +++TD L R G A LR+
Sbjct: 202 AAHGTLR-------LEALCLQDCQKLTDDAL-----------------RFVSLGLADLRS 237
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVS 429
+L C +TDAG+KH + L LNL N++D L L G + L +L+VS
Sbjct: 238 L----NLSFCAS-VTDAGLKHAARMPRLRELNLRSCDNISDLGLAYLAEGGSRLCALDVS 292
Query: 430 N-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++ GL H + L LRSL+L +C V+ + I R+
Sbjct: 293 FCDKVGDQGLLHASQGLFQLRSLSLNACPVSDDGIGRV 330
>gi|343420997|emb|CCD18942.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 623
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 136/421 (32%), Positives = 204/421 (48%), Gaps = 65/421 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 7 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 57
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD---------------- 170
+ L L L+L CT I + L L +LE+LN+ +C ITD
Sbjct: 58 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITDVSPLSKLSRLETLNLM 116
Query: 171 -----SDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+D+ PLS ++NL++L +S C+ +TD + L + L L L C + L
Sbjct: 117 YCTGITDVSPLSLISNLRTLDLSHCTGITD--VLPLSLMSNLCSLYLSHCTGITD-VPPL 173
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLEL 283
S L L LNL C D S+L+ LE+LNL C GI D ++L NL+ L+L
Sbjct: 174 SKLSRLETLNLMYCTGITD-VSPLSKLSRLETLNLMYCTGITDVSPLSLIS--NLRTLDL 230
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
S G + + LS ++NL S+ LS TGI+D + L+ LS L++LNL + TG+
Sbjct: 231 SHCT-GITDVLPLSLMSNLCSVYLSHCTGITD--VPPLSKLSRLETLNL----MYCTGIT 283
Query: 343 ALTSLTGLTHLD----LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS 397
++ L+ L+ L+ ++ ITD + L NL SL + G+TD V + LS
Sbjct: 284 DVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLYLSHCTGITD--VPPLSKLSR 339
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---LKNLRSLTLES 454
L LNL +TD + +S ++ L L+VS G+ + P L NLR+L L
Sbjct: 340 LETLNLMYCTGITD--VSPLSLMSRLEMLDVSG----CTGITDVSPLSDLSNLRTLDLSY 393
Query: 455 C 455
C
Sbjct: 394 C 394
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 193/416 (46%), Gaps = 76/416 (18%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
+DV+ LI SNL++LD + C I+D + L +SNL S+ IT +
Sbjct: 214 TDVSPLSLI-----SNLRTLDLSHCTGITD--VLPLSLMSNLCSVYLSHCTGIT--DVPP 264
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+ L L L+L CT I + L L +LE+LN+ +C ITD + PLS ++NL SL
Sbjct: 265 LSKLSRLETLNLMYCTGI-TDVSPLSKLSRLETLNLMYCTGITD--VSPLSLMSNLCSLY 321
Query: 187 IS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+S C+ +TD + L L +L LNL C + LS + L L+++ C D
Sbjct: 322 LSHCTGITD--VPPLSKLSRLETLNLMYCTGITD-VSPLSLMSRLEMLDVSGCTGITD-V 377
Query: 246 EKFSRLTNLESLNLDSC-GIGD-EGLVNLTGLCNLKCLELSDT-------QVGSSGLRHL 296
S L+NL +L+L C GI D L + L NL + L+ +V + +L
Sbjct: 378 SPLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDVSLLKKVKKLEVLYL 437
Query: 297 SG------------LTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD-TGLA 342
SG L+ LE ++L + TGI+D S L+ LS L+ LD R T T ++
Sbjct: 438 SGCTSITDVSPLSTLSGLEKLDLRYCTGITDVS--PLSTLSGLE--KLDLRYCTGITDVS 493
Query: 343 ALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLT 399
L++L+GL LDL G ITD + L L +L++ C G ++D + L SL
Sbjct: 494 PLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD-----VDSLCSLR 546
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L L +S I A LR + LK LR+L L C
Sbjct: 547 MLR----------------------ELRLSRLAINDAVLRDIVVLKCLRTLDLSHC 580
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 28/222 (12%)
Query: 62 VDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG-----LE----HLRGLSNLTSL 111
+D+SG + +TD L D SNL++LD ++C I+D +E ++ GL+++T +
Sbjct: 366 LDVSGCTGITDVS--PLSDLSNLRTLDLSYCTGITDVSPLSEIIELANLYMIGLTSITDV 423
Query: 112 SFRR----------NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
S + + + + + L L KLDL CT I + L L LE L+
Sbjct: 424 SLLKKVKKLEVLYLSGCTSITDVSPLSTLSGLEKLDLRYCTGI-TDVSPLSTLSGLEKLD 482
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+++C ITD + PLS L+ L L +S C+ +TD ++ L L +L L+L CP +
Sbjct: 483 LRYCTGITD--VSPLSTLSGLGKLDLSGCTGITD--VSPLSTLSRLETLDLSECPGVMSD 538
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+DSL +L L L L+R ++D L L +L+L C
Sbjct: 539 VDSLCSLRMLRELRLSRLAINDAVLRDIVVLKCLRTLDLSHC 580
>gi|384251251|gb|EIE24729.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 498
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 181/377 (48%), Gaps = 41/377 (10%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL----MKLES 159
GL++L L F +++ITA ++ L L L LE R L+ L L + L+
Sbjct: 30 GLTHL-HLCFHAHHSITAHTLQPLQQLRRLQTLVLENKARAQPTLMGLGHLGSQQIALDQ 88
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCP- 215
L++K DS + +S L +L V G + L GL++L LL +GC
Sbjct: 89 LHVKAFVVGLDSGIDSMSALRSLHLSNCILMMVRAKGQGFPVMLTGLRQLELLACKGCSG 148
Query: 216 VTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+++ + +L SL LN ++SDD C + L +++L L + EG LT
Sbjct: 149 LSSRPFAGIESLVSLKTCLLNCSLRMSDDTCADIASLRQVQTLGLACSAL--EGC--LTP 204
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLA-GLSSLKSLNLD 332
C + +GLR L G+T L +++LS ISD S+ ++A L+ L L+L
Sbjct: 205 AC-----------ITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLR 253
Query: 333 --------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGG 382
A +TD G+AAL SLT L + L A++ +G A L + LR LE+ C
Sbjct: 254 RPACDNPGAAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELSYC-D 312
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVS--NSRITSAGLR 439
L+D V + L L+ L+L+ ++TD + L+ G+ L+ L++S + + L
Sbjct: 313 SLSDTPVCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGDISLY 372
Query: 440 HLKPLKNLRSLTLESCK 456
+ L NL+ L L SC+
Sbjct: 373 AIATLPNLQVLRLHSCE 389
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 131/276 (47%), Gaps = 21/276 (7%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN----- 117
L+ + +T +GL L + L +LD + ISD + + R L+ L L RR
Sbjct: 202 LTPACITHAGLRSLCGMTQLTALDLSGHAAISDASMAEIARHLTRLIDLDLRRPACDNPG 261
Query: 118 --AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+T G+ A A L L + L + G L L +L L + +C+ ++D+ +
Sbjct: 262 AAVVTDAGIAALASLTLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTPVCE 321
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAA--CLDSLSALGSLF 231
L+ L +L L ++ C+ VTD + A ++G+ +L L+L C + L +++ L +L
Sbjct: 322 LTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSACHMHVGDISLYAIATLPNLQ 381
Query: 232 YLNLNRCQ-LSDDGCEKF---SRLTNLESLNLDSCG-IGDEGLVNLTGLC--NLKCLELS 284
L L+ C+ +SD G + L L++ C I D G ++ G C L+ L L
Sbjct: 382 VLRLHSCERVSDMGIGGLCSGAAAAALTHLDVRGCERISDAGATSI-GRCLKQLQYLSLE 440
Query: 285 DTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+G G+R LSGL +LE + + TG + S +
Sbjct: 441 HCHLIGDRGIRTLSGLPHLEILRVGGTGATTDSFAQ 476
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 53/253 (20%)
Query: 42 PG---VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG 98
PG V D + +AS + L SV LS + V +G L L+ L+ ++C +SD
Sbjct: 260 PGAAVVTDAGIAALASL-TLLESVRLSQAQVGQAGCAALASLPRLRCLELSYCDSLSDTP 318
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ L L +L+ LS ++T + A G+ L++LDL C +H G
Sbjct: 319 VCELTRLRHLSELSLAGCASVTDIAVTALVRGMPELMRLDLSAC-HMHVG---------- 367
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
D + ++ L NL+ L++ SC +V+D GI L C
Sbjct: 368 ------------DISLYAIATLPNLQVLRLHSCERVSDMGIGGL-------------CSG 402
Query: 217 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT 273
AA +L +L++ C+ +SD G R L L+ L+L+ C IGD G+ L+
Sbjct: 403 AAA--------AALTHLDVRGCERISDAGATSIGRCLKQLQYLSLEHCHLIGDRGIRTLS 454
Query: 274 GLCNLKCLELSDT 286
GL +L+ L + T
Sbjct: 455 GLPHLEILRVGGT 467
>gi|357615345|gb|EHJ69606.1| hypothetical protein KGM_07261 [Danaus plexippus]
Length = 438
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 37/295 (12%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFN 89
AL+ L L V D + IA +L ++L G +VTD+GL+ + L+ L+
Sbjct: 166 ALKRLDLSLCKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLR 225
Query: 90 FCIQISDGGLEHL------RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143
C ++D G+ HL RG L L + +T + +K A
Sbjct: 226 SCWHVNDDGIAHLCGGGEARGTPELEHLGLQDCQRLTDEALKHAA--------------- 270
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKG 202
GL KL+S+N+ +C +TD+ ++ L+ L +L+ + + +C V+D+G+A+L
Sbjct: 271 --------TGLPKLKSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDGVSDAGVAHLAE 322
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
+L L++ C S + LG L L+L+ C+L+D+G E+ +RL+ LE+LN+
Sbjct: 323 SGRLRALDVSFCDKVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIG 382
Query: 261 SC-GIGDEGLVNL-TGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGI 312
C + D GL L GL NLK ++L T + GL H+ L L +NL +
Sbjct: 383 QCTQVTDRGLRALGEGLKNLKAIDLYGCTCITHEGLDHIVKLPRLSVLNLGLWHV 437
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 144/317 (45%), Gaps = 33/317 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
+ L LESL++ C +TD+ + + L LK L +S C +VTDS + + + L+ L
Sbjct: 134 VAALPGLESLSLSGCYSVTDAALASAFATELPALKRLDLSLCKQVTDSSLGRIAQSLKNL 193
Query: 207 TLLNLEGC---PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
L L GC T L + + ++DDG CG
Sbjct: 194 EELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDGIAHL-------------CG 240
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKL 320
G+ G L+ L L D Q + L+H + GL L+SINLSF ++D LR L
Sbjct: 241 GGEA-----RGTPELEHLGLQDCQRLTDEALKHAATGLPKLKSINLSFCVAVTDAGLRHL 295
Query: 321 AGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLR-NFKNLRSL 377
A L L+ +NL A ++D G+A L L LD+ F ++ D ++ LR L
Sbjct: 296 ARLPHLEDVNLRACDGVSDAGVAHLAESGRLRALDVSFCDKVGDEALSHATLGLSGLRCL 355
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITS 435
+ LTD G++ + LS L LN+ Q +TD+ L + GL L ++++ IT
Sbjct: 356 SLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRALGEGLKNLKAIDLYGCTCITH 415
Query: 436 AGLRHLKPLKNLRSLTL 452
GL H+ L L L L
Sbjct: 416 EGLDHIVKLPRLSVLNL 432
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 38/300 (12%)
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSA--LGSLFYLNLNR 237
++ LQ+ S + +A L GL+ L+L GC VT A L S A L +L L+L+
Sbjct: 118 VRRLQVLSLRRGLRDAVAALPGLESLSL---SGCYSVTDAALASAFATELPALKRLDLSL 174
Query: 238 C-QLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGL--VNLTGLCNLKCLELSDTQVGSSG 292
C Q++D + ++ L NLE L L C + D GL + + S V G
Sbjct: 175 CKQVTDSSLGRIAQSLKNLEELELGGCCNVTDTGLLLIAWGLRKLRRLNLRSCWHVNDDG 234
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA-ALTSLTGL 350
+ HL G G R G L+ L L D +++TD L A T L L
Sbjct: 235 IAHLCG---------------GGEAR---GTPELEHLGLQDCQRLTDEALKHAATGLPKL 276
Query: 351 THLDL-FGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
++L F +TD+G +L +L +L C G ++DAGV H+ + L L++S
Sbjct: 277 KSINLSFCVAVTDAGLRHLARLPHLEDVNLRACDG-VSDAGVAHLAESGRLRALDVSFCD 335
Query: 408 NLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL 465
+ D+ L + GL+GL L++S R+T GL + L L +L + C +VT ++ L
Sbjct: 336 KVGDEALSHATLGLSGLRCLSLSACRLTDEGLERVARLSQLETLNIGQCTQVTDRGLRAL 395
>gi|290990770|ref|XP_002678009.1| predicted protein [Naegleria gruberi]
gi|284091619|gb|EFC45265.1| predicted protein [Naegleria gruberi]
Length = 329
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 108/216 (50%), Gaps = 2/216 (0%)
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R + S D + S + L SL + IG EG ++ + L L+++ Q+G G +++
Sbjct: 113 RLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTSLDITYNQIGVEGSKYI 172
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S + L S+N+ + GI + ++ + L SLN+ QI G ++ + LT LD++
Sbjct: 173 SEMKQLTSLNIYYNGIGVEGTKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIY 232
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I G+ Y+ K L SL I + G K I ++ LT LN++ N + + +
Sbjct: 233 YNGIGVEGSKYISEMKQLTSLNIGYNQIGVEGSKFISEMKQLT-LNITGN-QIGVEGAKF 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
IS + L SL+++ ++I G + + +K L SL +
Sbjct: 291 ISEMKQLTSLDITYNQIGVEGSKFISEMKQLTSLDI 326
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 27/255 (10%)
Query: 151 LKGLMKLESLNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
+K K +N+K+C + +S +K +S + L SL IS +++ G Y+ +++LT
Sbjct: 97 MKSQFKNSIVNVKFCYRLRNSPDKVKFISEMKQLTSLYISDNQIGVEGAKYISEMKQLTS 156
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L++ Q+ +G + S + L SLN+ GIG EG
Sbjct: 157 LDI------------------------TYNQIGVEGSKYISEMKQLTSLNIYYNGIGVEG 192
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ + L L + Q+G G +++S + L S+++ + GI + ++ + L S
Sbjct: 193 TKYISEMKQLTSLNIGYNQIGVEGAKYISEMKQLTSLDIYYNGIGVEGSKYISEMKQLTS 252
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LN+ QI G ++ + LT L++ G +I GA ++ K L SL+I + G
Sbjct: 253 LNIGYNQIGVEGSKFISEMKQLT-LNITGNQIGVEGAKFISEMKQLTSLDITYNQIGVEG 311
Query: 389 VKHIKDLSSLTLLNL 403
K I ++ LT L++
Sbjct: 312 SKFISEMKQLTSLDI 326
>gi|344270426|ref|XP_003407045.1| PREDICTED: F-box/LRR-repeat protein 13 [Loxodonta africana]
Length = 680
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 211/443 (47%), Gaps = 71/443 (16%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
L +L++ C LQ+L + P + D+ M I+ +L ++LS + +T+ + L
Sbjct: 178 LKPKTLKSVSHCRNLQELNVSDCPTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLP 237
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GL 130
++ NLQ+L +C + +D GL++L +G LT L I+ QG + A G+
Sbjct: 238 RNFHNLQNLSLAYCRKFTDKGLQYLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGI 297
Query: 131 INL------------VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
++L VK +E+C+RI V G I+D K LS
Sbjct: 298 MHLTINDMPTLTDKCVKALVEKCSRITS--VVFIGAPH-----------ISDCAFKALST 344
Query: 179 LTNLKSLQISCSK-VTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
NL+ ++ +K +TDS ++ ++ + +++ +G +T L SLS L L L
Sbjct: 345 -CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIYMVDCKG--LTDGSLKSLSVLKQLTVL 401
Query: 234 NLNRCQ-LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ 287
NL C + D G ++ T + LNL++C +GD +V L+ C NL L L + +
Sbjct: 402 NLANCVGIGDVGLKQLLDGPVSTKIRELNLNNCIHLGDASIVRLSERCPNLNYLNLRNCE 461
Query: 288 -VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 345
+ G+ H+ + +L S++LS T IS+ L L+ LK L+L + +ITD G+ A
Sbjct: 462 HLTDLGIEHIVNIFSLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITDMGIQAFC 521
Query: 346 --SLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------H 391
SL L HLD+ + +++D L + +L SL I G +TD+ ++ H
Sbjct: 522 KGSLI-LEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAMELLSAKCHYLH 580
Query: 392 IKDLSSLTLL------NLSQNCN 408
I D+S LL NL + CN
Sbjct: 581 ILDISGCILLTDQILENLQRGCN 603
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 172/396 (43%), Gaps = 77/396 (19%)
Query: 117 NAITAQGMKAFA-----------GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
NAI MK+ A +N+++L+ C L ++ L+ LN+ C
Sbjct: 141 NAIDFSTMKSMAIDKYITSTLQRWRLNVLRLNFRGCLLKPKTLKSVSHCRNLQELNVSDC 200
Query: 166 NCITDSDMKPLS--------------GLTN------------LKSLQIS-CSKVTDSGIA 198
+TD M+ +S G+TN L++L ++ C K TD G+
Sbjct: 201 PTLTDESMRHISEGCPGVLYLNLSNTGITNRTMRLLPRNFHNLQNLSLAYCRKFTDKGLQ 260
Query: 199 YL---KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGC-----EKF 248
YL KG KLT L+L GC ++ +++ + + +L +N D C EK
Sbjct: 261 YLNLGKGCHKLTYLDLSGCTQISVQGFRNIANSCSGIMHLTINDMPTLTDKCVKALVEKC 320
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHL-SGLTNLESIN 306
SR+T++ + + + I D L+ CNL+ + + ++ S + + N+ I
Sbjct: 321 SRITSV--VFIGAPHISDCAFKALST-CNLRKIRFEGNKRITDSCFKFIDKHYPNIRHIY 377
Query: 307 L-SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ G++DGSL+ L+ L L LNL + I D GL L L G T
Sbjct: 378 MVDCKGLTDGSLKSLSVLKQLTVLNLANCVGIGDVGLKQL----------LDGPVSTKIR 427
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGL 423
L N +L DA + + + +L LNL +LTD +E I + L
Sbjct: 428 ELNLNNCIHL----------GDASIVRLSERCPNLNYLNLRNCEHLTDLGIEHIVNIFSL 477
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 458
VS+++S + I++ GL L K L+ L+L C K+T
Sbjct: 478 VSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKIT 513
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 31/163 (19%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ +++ GL+ L L+ L + C +I+D
Sbjct: 476 SLVSVDLSGTVISNEGLMTLSRHKKLKELSLSECYKITD--------------------- 514
Query: 118 AITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMK 174
G++AF G + L LD+ C ++ ++ + + L SL+I C ITDS M+
Sbjct: 515 ----MGIQAFCKGSLILEHLDVSYCPQLSDEIIKALAIYCISLTSLSIAGCPKITDSAME 570
Query: 175 PLSGLTN-LKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGC 214
LS + L L IS C +TD + L +G +L +L + C
Sbjct: 571 LLSAKCHYLHILDISGCILLTDQILENLQRGCNQLRILKMRYC 613
>gi|149174147|ref|ZP_01852775.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
gi|148847127|gb|EDL61462.1| hypothetical protein PM8797T_13198 [Planctomyces maris DSM 8797]
Length = 476
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 10/223 (4%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
R T ESL + D+ L + + L LS ++V +G+ +L G T L S+NLS
Sbjct: 255 RDTGFESLG--HSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSG 312
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
T ++D +L L GL L S+NL Q++ G+ L + + + G + A+
Sbjct: 313 TEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGF 372
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K L S + G L G ++ L+L LTD+ L + G L +L +S
Sbjct: 373 QLK-LSSPAVTGELLKLFGTVRVQ-----AYLDL-DGIALTDEGLASLGGFEDLRTLRIS 425
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
N++I+SAGL HL L +LR L L V DI +LQ R LPN
Sbjct: 426 NTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQ-RALPN 467
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 42/197 (21%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ +TD ++ + + L +S SKVTD+GI YL+G +L LNL G VT A L+ L
Sbjct: 265 SAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDATLEHLK 324
Query: 226 ALGSLFYLNLNRCQLSDDGC---------------------------------------- 245
L L +NL Q+S G
Sbjct: 325 GLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSSPAVTGE 384
Query: 246 --EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
+ F + L+LD + DEGL +L G +L+ L +S+TQ+ S+GL HL+GL +L
Sbjct: 385 LLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLAGLASLR 444
Query: 304 SINLSFTGISDGSLRKL 320
++L + ++D + KL
Sbjct: 445 ELDLRGSAVADEDINKL 461
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+ +L ++D F+ + L L + D G+ L G L L LS T+V +
Sbjct: 259 FESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEYLRGATRLYSLNLSGTEVTDA 318
Query: 292 GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLK-----------------SLNLDA 333
L HL GL L S+NL T +S G L +A S++ L L +
Sbjct: 319 TLEHLKGLPELHSVNLRGTQVSPRGVLELIASSDSMQIAFPGGWVWKLENAHGFQLKLSS 378
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+T L ++ +LDL G +TD G A L F++LR+L I ++ AG+ H+
Sbjct: 379 PAVTGELLKLFGTVRVQAYLDLDGIALTDEGLASLGGFEDLRTLRISNTQISSAGLNHLA 438
Query: 394 DLSSLTLLNL 403
L+SL L+L
Sbjct: 439 GLASLRELDL 448
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 21/233 (9%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCS 81
E+S+ FRD + L + V D+ + + + + + LS S VTD+G+ +L+ +
Sbjct: 248 EISMVEFRDTGFESLG---HSAVTDQILRDF-NYWNKVSGLWLSRSKVTDAGIEYLRGAT 303
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L SL+ + +++D LEHL+GL L S++ R + G++ L+
Sbjct: 304 RLYSLNLS-GTEVTDATLEHLKGLPELHSVNLRGTQV-------SPRGVLELIASSDSMQ 355
Query: 142 TRIHGGLVNLKGLMKLES---LNIKWCNCITDSDMKPLSGLTNLKS-LQISCSKVTDSGI 197
GG V KLE+ +K + ++ L G +++ L + +TD G+
Sbjct: 356 IAFPGGWV-----WKLENAHGFQLKLSSPAVTGELLKLFGTVRVQAYLDLDGIALTDEGL 410
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
A L G + L L + +++A L+ L+ L SL L+L ++D+ K R
Sbjct: 411 ASLGGFEDLRTLRISNTQISSAGLNHLAGLASLRELDLRGSAVADEDINKLQR 463
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%)
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+FT I+ G + +L +TD L ++ L L +++TD+G Y
Sbjct: 239 AFTTIAAGDEISMVEFRDTGFESLGHSAVTDQILRDFNYWNKVSGLWLSRSKVTDAGIEY 298
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
LR L SL + G +TDA ++H+K L L +NL LELI+
Sbjct: 299 LRGATRLYSLNLSGTEVTDATLEHLKGLPELHSVNLRGTQVSPRGVLELIA 349
>gi|443688071|gb|ELT90873.1| hypothetical protein CAPTEDRAFT_165456 [Capitella teleta]
Length = 642
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 220/480 (45%), Gaps = 58/480 (12%)
Query: 18 RC--LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL 74
RC +T ++ + R+C LQDL L + P ++D + ++ ++ +++S S +TD+ L
Sbjct: 171 RCERITSLTFYSIRECRNLQDLNLSECPALDDDSLKMVLEGCKIIIYLNISHSLITDASL 230
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAG- 129
+ K C NLQ L FC++ SD GL++L L L + +T G+ +
Sbjct: 231 RSISKYCLNLQYLSLAFCLRYSDKGLQYLANGESAKRLNHLDISGCSQVTPNGLAKLSEG 290
Query: 130 -------LINLVKLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
L+N ++ + C I NL+ + L S N ++D+ +K ++
Sbjct: 291 CSDVQTLLLNDIESFDDACLEAITDNCKNLRNISFLGSHN------LSDNALKNVATSKK 344
Query: 182 LKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
L+ L+I S K+TD Y+ K +L L L C +T L LS +L +NL C
Sbjct: 345 LQMLKIDSNCKITDITFKYIGKSCHELRHLYLVDCHRITDLTLKVLSQCRNLTVVNLADC 404
Query: 239 -QLSDDGCEKFSRLT---NLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSS 291
+++D G + L+ LNL +C +GD LVN+ C NL L L + + +
Sbjct: 405 VRITDTGVRYLVESSCGNKLQELNLTNCIRVGDIALVNIHKRCHNLTYLHLCFCEHISEA 464
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTG 349
G+ L +L ++++S D L L LK +NL + ITD GL T
Sbjct: 465 GIELLGQTHSLTALDISGCNCGDAGLSSLGNNIRLKDVNLSECSAITDLGLQKFAQQCTE 524
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
+ LDL ++ GA +++L C LT + K L+ L++ LS C+
Sbjct: 525 IERLDLSHCQMITDGA--------IKNLAFCCRMLTHLSLAGCKLLTDLSVQYLSGVCHY 576
Query: 410 TDKTLELISGLTGLVSLNVSNS-RITSAGLRHLKP-LKNLRSLTLESC-KVTANDIKRLQ 466
L+ L++S S IT +++LK K L++L + C ++ + + ++Q
Sbjct: 577 -------------LLYLDISGSLHITDKSMKYLKKGCKKLQTLIMLYCSHISKHAVHKMQ 623
>gi|290998760|ref|XP_002681948.1| predicted protein [Naegleria gruberi]
gi|284095574|gb|EFC49204.1| predicted protein [Naegleria gruberi]
Length = 391
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 141/293 (48%), Gaps = 4/293 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
L LT L +N I ++G + + +L KLD+ T I G + L +L L++
Sbjct: 91 LKQLTELDIS-DNKINSEGARVISESFKHLTKLDISNNT-IDVGTKYISQLKQLTYLDVS 148
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
N I + D+K + + L SL I + + + G Y+ GL+++T L++ +
Sbjct: 149 -NNEIEEEDVKYIGNMNGLTSLSIQYNHIGNIGAQYISGLKQITTLSIYSGDIGDEGAKY 207
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+ ++ G S+L L L++ + G GL +T L L L
Sbjct: 208 ISEMKQLTNLNIGFNNINIRGAIHISKLKQLTELSISANNFGSGGLKYITQLKQLTKLYC 267
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D+++ S G++++S + L ++LS+ I+ ++ L L L L + + + G
Sbjct: 268 CDSEIDSEGVKYISEMKQLTDVDLSYNNINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMY 327
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
++ L LTHLD+ ++D G + K L SL I ++ GV++I+ ++
Sbjct: 328 ISRLNQLTHLDICRNNVSDEGFKSISKMKQLSSLFISENTISGEGVEYIRKMT 380
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 2/272 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+L L IS + + D G Y+ L++LT L++ + + + + L L++
Sbjct: 116 FKHLTKLDISNNTI-DVGTKYISQLKQLTYLDVSNNEIEEEDVKYIGNMNGLTSLSIQYN 174
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ + G + S L + +L++ S IGDEG ++ + L L + + G H+S
Sbjct: 175 HIGNIGAQYISGLKQITTLSIYSGDIGDEGAKYISEMKQLTNLNIGFNNINIRGAIHISK 234
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L L +++S G L+ + L L L +I G+ ++ + LT +DL
Sbjct: 235 LKQLTELSISANNFGSGGLKYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLTDVDLSYN 294
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I G YL K L L I G L + G +I L+ LT L++ +N N++D+ + IS
Sbjct: 295 NINSEGVKYLNKLKKLTKLYIGGNDLGNKGAMYISRLNQLTHLDICRN-NVSDEGFKSIS 353
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+ L SL +S + I+ G+ +++ + S+
Sbjct: 354 KMKQLSSLFISENTISGEGVEYIRKMTQAASI 385
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 120/256 (46%), Gaps = 3/256 (1%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
SQ L +D+S +++ + + ++ + + L SL + I + G +++ GL +T+LS
Sbjct: 137 SQLKQLTYLDVSNNEIEEEDVKYIGNMNGLTSLSIQYN-HIGNIGAQYISGLKQITTLSI 195
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ I +G K + + L L++ G +++ L +L L+I N +
Sbjct: 196 YSGD-IGDEGAKYISEMKQLTNLNIGFNNINIRGAIHISKLKQLTELSIS-ANNFGSGGL 253
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K ++ L L L S++ G+ Y+ +++LT ++L + + + L+ L L L
Sbjct: 254 KYITQLKQLTKLYCCDSEIDSEGVKYISEMKQLTDVDLSYNNINSEGVKYLNKLKKLTKL 313
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ L + G SRL L L++ + DEG +++ + L L +S+ + G+
Sbjct: 314 YIGGNDLGNKGAMYISRLNQLTHLDICRNNVSDEGFKSISKMKQLSSLFISENTISGEGV 373
Query: 294 RHLSGLTNLESINLSF 309
++ +T SI + F
Sbjct: 374 EYIRKMTQAASICVDF 389
>gi|18378037|emb|CAD21749.1| hypothetical leucine-rich repeat protein 1, LRRP1 [Trypanosoma
brucei]
Length = 1394
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 182/431 (42%), Gaps = 59/431 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL+ LDL + +
Sbjct: 189 IDNNDARHLFNIGTLEKLAITDTMQLT--NIRGISRLTNLMCLDLNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLEALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G PV CL L GSL LN++ C QL D S T E LNL+ C G+
Sbjct: 304 GVPVEDNCLKGLCDCGSLERLNISYCIQLKD--INPLSNATATEELNLNGCRRITRGIGV 361
Query: 272 LTGLCNLKCLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLS 308
+ L L+ L + D VG+ G + LS + LE +N+
Sbjct: 362 VWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQ 421
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD--- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 422 KCADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALA 481
Query: 355 ---------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 482 NILTLEKLSLHGCTDIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTMVSLNLSH 541
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 542 CWKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILPNTHITDRDISHF 599
Query: 466 QSRDLPNLVSF 476
+ NLV+
Sbjct: 600 S--NCKNLVTL 608
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 137/521 (26%), Positives = 209/521 (40%), Gaps = 106/521 (20%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L L + +TD + H +C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILPNTHITDRDISHFSNCKNLVTLDLSFC 613
Query: 92 IQISD----------------------GGLEHLRGLSNLTSLSFR----RNNAITAQG-- 123
++ D GL L L L L+ + +++ I + G
Sbjct: 614 NKLLDVTTLSNITTLEDLNLDNCSNIRKGLSVLGELPRLCVLNIKGVHLKDSVIGSLGNG 673
Query: 124 ----------------MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE--------- 158
+K + L+ L +L+L C ++ G+ L L++L
Sbjct: 674 NSFVKLSLENCKGFGDVKPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQV 733
Query: 159 ----------------SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLK 201
SLN+ C IT + ++ LT L+ L I +C VT SG
Sbjct: 734 DNNSLENICTSSSPLVSLNLSHCKKITS--ISAIASLTALEELNIDNCCNVT-SGWNVFG 790
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
L +L + L + + +S SL LNL C+ D S++T LE LNLD
Sbjct: 791 TLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITD-VTALSKITMLEELNLDC 849
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SLRK 319
C +G+ L L + L + + Q+G S + S L N +S+ S G S++
Sbjct: 850 CPNIRKGIETLGTLPKARILSMKECQIGDSDAQQCSILGNSKSLVKLNLERSRGRISVKA 909
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+ +++L+ L LD Q + + S + L HL + + TD
Sbjct: 910 LSNIATLEELVLDHAQ----EVCCIPSFSCLPHLRVLNVKYTD----------------- 948
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G +T K+I + SL LLNLS +TD + ++S L+ L LNV G
Sbjct: 949 INGDVT----KNISESKSLRLLNLSHCKWVTD--ISVLSSLSTLEKLNVKCCNGIRKGWE 1002
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 479
L L LR L +TA DI L S + L L FR E
Sbjct: 1003 SLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 181/405 (44%), Gaps = 36/405 (8%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG++ + L L + SL+ + C ++++ + H+ L L L+ I A
Sbjct: 513 LDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN--VSHISSLEALNELNLSNCFGINA 570
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
G +A L L L + + L +L++ +CN + D + LS +T
Sbjct: 571 -GWEAIEKLQQLHVAILPNTHITDRDISHFSNCKNLVTLDLSFCNKLLD--VTTLSNITT 627
Query: 182 LKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L+ L + +CS + G++ L L +L +LN++G + + + SL S L+L C+
Sbjct: 628 LEDLNLDNCSNIR-KGLSVLGELPRLCVLNIKGVHLKDSVIGSLGNGNSFVKLSLENCKG 686
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGL 299
D + S L LE LNL C G+ L L L+ L+L TQV ++ L ++ +
Sbjct: 687 FGD-VKPLSNLVTLEELNLHYCDKVTSGMGTLGRLLQLRVLDLGRTQVDNNSLENICTSS 745
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
+ L S+NLS ++IT ++A+ SLT L L++
Sbjct: 746 SPLVSLNLSH-----------------------CKKIT--SISAIASLTALEELNIDNCC 780
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
SG LR + + D V+H+ + SL LNL+ ++TD T +S
Sbjct: 781 NVTSGWNVFGTLHQLRVATLSNTRINDENVRHVSECKSLNTLNLAFCKDITDVT--ALSK 838
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+T L LN+ G+ L L R L+++ C++ +D ++
Sbjct: 839 ITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECQIGDSDAQQ 883
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 199/446 (44%), Gaps = 62/446 (13%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL +N K+ D+ S+ SL ++LS VTD + L S L+ L+
Sbjct: 935 CLPHLRVLNVKYTDINGDVTKNISESKSLRLLNLSHCKWVTDISV--LSSLSTLEKLNVK 992
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G E L L L ++ + ITA+ + + LVKL RC ++ V
Sbjct: 993 CCNGIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTV 1050
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
K + LE L ++ C+ GL L +L L L+ L L
Sbjct: 1051 VYK-IQSLEELMVRSCS----------DGLKGLNAL------------GTLPRLRFLHLR 1087
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
NL+G ++ ++S+ SL LN+ R +L++ S +T+LE L+L CG EG
Sbjct: 1088 NLKGSDIS---VESIGTSKSLVRLNIEMREELTN--ATPLSNITSLEELSLRDCGDNLEG 1142
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLK 327
+ L L LK L+L +++ L + ++ S+NL+ + ++D S ++ L++L+
Sbjct: 1143 VGTLGKLPRLKSLDLGLSRISDDTLDDICLSRSITSLNLASSWKLTDIS--HISNLTALE 1200
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTD 386
+NL ++G AL+ L L ++L A +T Y+ K L +L I +TD
Sbjct: 1201 EMNLSGCYPINSGWKALSELPRLRVVNLESASVTTRYDGYYISRCKYLVTLNIQLSDMTD 1260
Query: 387 AG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS------LNVSNSRITSAGLR 439
A + +IK L L + K+ EL G + L + L++ SRIT LR
Sbjct: 1261 ASYIANIKTLEELRI----------GKSKELTQGFSALFTLPRLRILDLFMSRITDEDLR 1310
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRL 465
++P + L L C+ NDI L
Sbjct: 1311 EIQPPHTIEELNLSYCE-ELNDITPL 1335
>gi|440802686|gb|ELR23615.1| leucine rich repeat domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 431
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 189/419 (45%), Gaps = 31/419 (7%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
LP ++ ++I L + LT +LE F+ ++ L L V D W+DV+ SSL
Sbjct: 29 LPIEVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIRAVEDTWLDVLKGY-SSLTY 87
Query: 62 VDLSGS-DVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
+DLS S +TD+GL LK L+SL + C +I+D GL L NL +
Sbjct: 88 LDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAPLGTHCPNLRRVHVG-GTM 146
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + A L +L + + TR L L+K + W + D +
Sbjct: 147 ITYYALAALNSLEDLQDVSVN-GTRFPDK--ALYTLLKRKEAPDSWA----EEDYGEVRQ 199
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN- 236
LT+ Q S + V D G+ LKGL L LNL P A L +L SL +L+++
Sbjct: 200 LTDF---QASRTLVRDDGVRLLKGLGASLHTLNLAFNPGIADW-SFLGSLASLTHLDISL 255
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RH 295
+D +L++L LNL + DEG+ L L L+ L++ T + L
Sbjct: 256 NVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLRSLDVGKTAITHRALGPG 315
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGLTHL 353
L+ L NL +++L +T + R L L L S TGL L LT L
Sbjct: 316 LAKLPNLTALSLPYTNVGGKFSRYLTVLHRLTSFK-------TTGLLELAKGRYPHLTAL 368
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT---LLNLSQNCNL 409
D+ ++TDSG A++ LR+ + +T+ G + ++ L+ L L+N SQ L
Sbjct: 369 DVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQLTGLVLDDLMNTSQGTYL 427
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 156/358 (43%), Gaps = 26/358 (7%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRI-HGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
A+ + G +L LDL RI GL LK + +L SL + C ITD+ + P
Sbjct: 70 AVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAP 129
Query: 176 L-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L + NL+ + + + +T +A L L+ L +++ G L +L
Sbjct: 130 LGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTL---------- 179
Query: 235 LNRCQLSDDGCEK-FSRLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSG 292
L R + D E+ + + L + D+G+ L GL +L L L+ G +
Sbjct: 180 LKRKEAPDSWAEEDYGEVRQLTDFQASRTLVRDDGVRLLKGLGASLHTLNLA-FNPGIAD 238
Query: 293 LRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L L +L +++S G +D + LSSL LNL ++TD G+ AL L+ L
Sbjct: 239 WSFLGSLASLTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALMELSQLR 298
Query: 352 HLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
LD+ IT L NL +L + T+ G K + L+ L L + L
Sbjct: 299 SLDVGKTAITHRALGPGLAKLPNLTALSL---PYTNVGGKFSRYLTVLHRLTSFKTTGL- 354
Query: 411 DKTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
LEL G L +L+V ++T +GL H+ L LR+ + + KVT + +Q
Sbjct: 355 ---LELAKGRYPHLTALDVGCDQLTDSGLAHIGELAALRNFNMWNTKVTNQGAELVQQ 409
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 144/332 (43%), Gaps = 45/332 (13%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE---GCPVTA------- 218
TD K L +L I +V + + YL ++LTL LE PV
Sbjct: 13 TDESWKAPHIARKLPALPI---EVIERILLYLHRTERLTLEALEFFKAFPVETLFLSNIR 69
Query: 219 ----ACLDSLSALGSLFYLNL-NRCQLSDDG-CEKFSRLTNLESLNLDSCG-IGDEGLVN 271
LD L SL YL+L N +++D G E + L SL +D C I D GL
Sbjct: 70 AVEDTWLDVLKGYSSLTYLDLSNSYRITDTGLAECLKCMPQLRSLFVDRCKRITDAGLAP 129
Query: 272 LTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-----RKLAGLSS 325
L C NL+ + + T + L L+ L +L+ ++++ T D +L RK A S
Sbjct: 130 LGTHCPNLRRVHVGGTMITYYALAALNSLEDLQDVSVNGTRFPDKALYTLLKRKEAPDSW 189
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEIC-GGG 383
+ + RQ+TD A +L + D G L+ +L +L + G
Sbjct: 190 AEEDYGEVRQLTD--FQASRTL------------VRDDGVRLLKGLGASLHTLNLAFNPG 235
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ D + L+SLT L++S N TD+ + L+ L LN+S + +T G+ L
Sbjct: 236 IADWSF--LGSLASLTHLDISLNVGFTDQFAADVGKLSSLTLLNLSKTELTDEGIPALME 293
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
L LRSL + +T + ++ LPNL +
Sbjct: 294 LSQLRSLDVGKTAITHRALGPGLAK-LPNLTA 324
>gi|290982306|ref|XP_002673871.1| LRR_RI domain-containing protein [Naegleria gruberi]
gi|284087458|gb|EFC41127.1| LRR_RI domain-containing protein [Naegleria gruberi]
Length = 529
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 192/392 (48%), Gaps = 17/392 (4%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
+++I+ L ++D+S + + +SG+ LK L L+ ++C I G++ +R ++ L
Sbjct: 146 IEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSYC-DIDATGIQFIRNMTCL 203
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
L+ NN I +G + L NL +LD+ G ++ + L+ L+I N I
Sbjct: 204 IKLNISGNN-INCKGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISH-NQI 261
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ K +S L+ L+ L IS + G+ Y+ K L+ LT +++ G + ++++
Sbjct: 262 LNGGAKAISSLSKLEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASM 321
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL----DSCGIGDEGLVNLTGLCNLKCLEL 283
+L L++ L G + S++ NL LN+ D IG+ ++ L NL L
Sbjct: 322 NNLKVLSIAESCLGLLGVQYLSKMENLTYLNISDNIDDIFIGE----SINDLQNLTTLLY 377
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLA 342
++ + +S LT L ++N+ T ISD + L + L L +L D IT G+
Sbjct: 378 TNNSLSMDEAITISSLTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVK 437
Query: 343 ALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ S+ L L L G RI D G Y+ + ++LR L +C + D GV+ + + + L
Sbjct: 438 LISESMIDLESLYLSGNRIGDEGLTYICSLQHLRILGVCNCEIGDRGVQVLVNCAPKKLR 497
Query: 402 NLSQNC--NLTDKTLELISGLTGLVSLNVSNS 431
L +C N+T K +LI + L S+ + N+
Sbjct: 498 ELLIDCNENITSKGCKLIYSIPQLNSIYLENN 529
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 144/285 (50%), Gaps = 6/285 (2%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L +L IS + + +SG+ LK L KLT LN+ C + A + + + L LN++ ++
Sbjct: 156 LTNLDISFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGNNIN 214
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
G S L NL+ L++ S + +EG +++ + NLK L +S Q+ + G + +S L+
Sbjct: 215 CKGALLLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISSLSK 274
Query: 302 LESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LE +++S I L+ ++ L +L +++ G+ + S+ L L + + +
Sbjct: 275 LEILHISNCDIGCEGLQYISKNLKNLTEIDIGGNHFGMDGVIVIASMNNLKVLSIAESCL 334
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
G YL +NL L I + D + + I DL +LT L + N D+ + IS
Sbjct: 335 GLLGVQYLSKMENLTYLNI-SDNIDDIFIGESINDLQNLTTLLYTNNSLSMDEAIT-ISS 392
Query: 420 LTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIK 463
LT L +LN+ ++ I+ + L L +L +L ++ +T+ +K
Sbjct: 393 LTQLTTLNIESTEISDVHIEILCSSLHHLINLYADTNFITSWGVK 437
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 295 HLSGLTNLESINLSFT-GISDG----SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
H+ GLT SF+ ISD S+ KL + +L L++ I D+G+A L L
Sbjct: 77 HIHGLT------FSFSKAISDKTNLISIEKL--MPNLIHLDIYGSDIEDSGVACLCKLKE 128
Query: 350 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L L++ ++T G + K L +L+I L ++G+K +K L LT LN+S
Sbjct: 129 LKILNIGSNKLTSKGRGIEMISKFMKCLTNLDISFNSLGNSGMKQLK-LDKLTDLNVSY- 186
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
C++ ++ I +T L+ LN+S + I G L LKNL+ L + S + K +
Sbjct: 187 CDIDATGIQFIRNMTCLIKLNISGNNINCKGALLLSNLKNLQELDIASACLKEEGAKHIS 246
Query: 467 SRD 469
D
Sbjct: 247 RMD 249
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG--LAALTSLTG-LTHLDL 355
+ NL +++ + I D + L L LK LN+ + ++T G + ++ LT+LD+
Sbjct: 102 MPNLIHLDIYGSDIEDSGVACLCKLKELKILNIGSNKLTSKGRGIEMISKFMKCLTNLDI 161
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ +SG L+ L L + + G++ I++++ L LN+S N N+ K
Sbjct: 162 SFNSLGNSGMKQLK-LDKLTDLNVSYCDIDATGIQFIRNMTCLIKLNISGN-NINCKGAL 219
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L+S L L L+++++ + G +H+ + NL+ L++ ++ K + S
Sbjct: 220 LLSNLKNLQELDIASACLKEEGAKHISRMDNLKFLSISHNQILNGGAKAISS 271
>gi|302802011|ref|XP_002982761.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
gi|300149351|gb|EFJ16006.1| hypothetical protein SELMODRAFT_52320 [Selaginella moellendorffii]
Length = 516
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 139/498 (27%), Positives = 213/498 (42%), Gaps = 75/498 (15%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSL 59
+LP +++ + ++L+ + LE F+ ++++L L V+ +WM I + +
Sbjct: 28 ILPAHLAESLLHQLLVKNLFSPPLLELFQ-LSVEELDLNGELSVDAEWMAYIGGFRHLRV 86
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF-------CIQISDGGLEHLRGLSNLTSLS 112
L V+ S + +S + HL L F+F C +I++ GLEH+ L L L
Sbjct: 87 LKVE-SCKALNNSAIWHLSG-----KLHFSFERKLIDRCSKITNQGLEHILTLGKLKHLG 140
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL------VNLKGLMKLESLNIKWCN 166
I QG+ A L NL LDL GGL V+ +++L W +
Sbjct: 141 LS-ETGIGEQGIGKLAVLRNLSHLDL-------GGLPVTDSHVSSLLVLQLLIDLQLWGS 192
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT--------- 217
IT+ L G L+ L ++ +KV+ + + +++ LNL C V
Sbjct: 193 SITNEGANMLRGFPRLEILNLAWTKVS-----VVPSMPRVSQLNLSHCVVLSVSEEGSAL 247
Query: 218 -------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE---SLNLDSCGIGDE 267
A D L L S L+ +LS + L +L+ L+L S
Sbjct: 248 DQLRLSGATIQDPLRVLHSHSLPELSVLELSATNLAALTFLGSLKRVVKLDLSSMPSVSS 307
Query: 268 GLVNLTGLC--NLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLS 324
+NL C NLK L+LSDT+VGS G+ L+G + LE ++L T I+D L +
Sbjct: 308 DTMNLLAKCARNLKHLDLSDTRVGSEGVAVLTGHVPALEHLSLRGTSITDSVFGYLGLMP 367
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSG---AAYLRNFKNLRSL 377
L ++L TSLTG+ + T DS +L+ NLR L
Sbjct: 368 LLIDIDLSN-----------TSLTGMPVFEFTKVYYTCAPVDSSFWSVLHLQQLHNLRRL 416
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
++ +D K + L LT L L LTD +L +S L L SL + +T AG
Sbjct: 417 DLRRTRFSDKSCKRLACLVRLTHLLLCAEF-LTDASLHELSALPNLRSLAFQGTVLTDAG 475
Query: 438 LRHLKPLKNLRSLTLESC 455
LR LKP L L L C
Sbjct: 476 LRSLKPPPPLEELDLTDC 493
>gi|386333501|ref|YP_006029671.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195950|gb|AEG69135.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 462
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 12/315 (3%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
GG+ + L+ L + TD+D++ L L + +T GIA+L L
Sbjct: 114 GGIPSPDDYPALQKLTL--IGPFTDADLQRLPPYLRELDLSLCEGPITAVGIAHLLAL-P 170
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L L++ GC + A L+ +L LNL R + D G F+R L +LN+ GIG
Sbjct: 171 LDRLDVSGCGLNADSARLLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVSGNGIG 230
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
G+ L + L++SD ++G G R L+ L ++ S GI + LA ++
Sbjct: 231 PAGVRALAANTTITTLDISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTT 290
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L SL+L +I G+ AL T L L G + A L L L + +
Sbjct: 291 LTSLDLSYNEIEAEGVEALGRNTTLRTLHACGNELGHREAELLAASTTLTVLNLSSNAIG 350
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL--TG-LVSLNVSNSRITSAGLRHLK 442
+AG + ++L LNLS N +E + TG L +L++SN+RI A + L
Sbjct: 351 NAGARAFGANTTLAELNLSNNG------IERVPAWADTGKLTTLDLSNNRIGDAAAQVLA 404
Query: 443 PLKNLRSLTLESCKV 457
+ L +L + S ++
Sbjct: 405 ASRTLTTLNVGSNRI 419
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 18/316 (5%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN----AITAQGMK 125
TD+ L L L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 135 TDADLQRLPPY--LRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCGLNADSAR 187
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 188 LLAGHATLTALNLRRNAIGDAGVAAFARNKKLTTLNVS-GNGIGPAGVRALAANTTITTL 246
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ ++ +G
Sbjct: 247 DISDNEIGDEGARALASNAALTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGV 306
Query: 246 EKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E R T L +L+ +CG +G L L L LS +G++G R T L
Sbjct: 307 EALGRNTTLRTLH--ACGNELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLA 364
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NLS GI + A L +L+L +I D L + LT L++ RI D+
Sbjct: 365 ELNLSNNGIE--RVPAWADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDA 422
Query: 364 GAAYLRNFKNLRSLEI 379
GA L L +L++
Sbjct: 423 GACALAGNTTLATLDV 438
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 36/303 (11%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL-----MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL C G + G+ + L+ L++ C DS + L+G L +L +
Sbjct: 146 LRELDLSLCE----GPITAVGIAHLLALPLDRLDVSGCGLNADS-ARLLAGHATLTALNL 200
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-------------LG------ 228
+ + D+G+A +KLT LN+ G + A + +L+A +G
Sbjct: 201 RRNAIGDAGVAAFARNKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDNEIGDEGARA 260
Query: 229 -----SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+L L+ + C + DG + + T L SL+L I EG+ L L+ L
Sbjct: 261 LASNAALTRLDASDCGIGPDGTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLHA 320
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++G L+ T L +NLS I + R ++L LNL I + A
Sbjct: 321 CGNELGHREAELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNGIER--VPA 378
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
LT LDL RI D+ A L + L +L + + DAG + ++L L++
Sbjct: 379 WADTGKLTTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATLDV 438
Query: 404 SQN 406
S N
Sbjct: 439 SLN 441
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 11/255 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
++ L ++++SG+ + +G+ L + + +LD + +I D G L + LT L
Sbjct: 214 ARNKKLTTLNVSGNGIGPAGVRALAANTTITTLDISDN-EIGDEGARALASNAALTRLDA 272
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC-NCITDSD 172
+ I G +A A L LDL G+ L L +L+ C N + +
Sbjct: 273 S-DCGIGPDGTQALATSTTLTSLDLSYNEIEAEGVEALGRNTTLRTLHA--CGNELGHRE 329
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE--GCPVTAACLDSLSALGSL 230
+ L+ T L L +S + + ++G L LNL G A D+ G L
Sbjct: 330 AELLAASTTLTVLNLSSNAIGNAGARAFGANTTLAELNLSNNGIERVPAWADT----GKL 385
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L+ ++ D + + L +LN+ S IGD G L G L L++S ++G
Sbjct: 386 TTLDLSNNRIGDAAAQVLAASRTLTTLNVGSNRIGDAGACALAGNTTLATLDVSLNRIGK 445
Query: 291 SGLRHLSGLTNLESI 305
+G+ L+ T L+ +
Sbjct: 446 AGMLALAANTTLKKL 460
>gi|290980460|ref|XP_002672950.1| predicted protein [Naegleria gruberi]
gi|284086530|gb|EFC40206.1| predicted protein [Naegleria gruberi]
Length = 331
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 103/205 (50%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS +++ G + +++LT LN+ G + +S + L
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L + ++ +G + S + L SL++ IGDE + ++ + L L +++ +G +G
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ + + L S+N+S+ I D + + + L SLN+ +I + G ++ + LT
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304
Query: 353 LDLFGARITDSGAAYLRNFKNLRSL 377
LD+ G RI GA ++ K L SL
Sbjct: 305 LDIAGNRIGGEGAKFISEMKQLISL 329
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 1/206 (0%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L +S + L L+++ ++ +G + S + L SLN++ IG EG ++G+ L
Sbjct: 125 LKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMKQLTS 184
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L + + ++G G +++S + L S+++ I D ++ ++ + L SLN+ I D G
Sbjct: 185 LYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVIGDAG 244
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ + LT L++ I D GA Y+ K L SL I + +AG K I ++ LT
Sbjct: 245 AKFIGDMKQLTSLNISYNVIGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEMKQLTS 304
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSL 426
L+++ N + + + IS + L+SL
Sbjct: 305 LDIAGN-RIGGEGAKFISEMKQLISL 329
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
G E L ++ + L L++S ++ G + +S + L S+N++ I + ++G+
Sbjct: 121 GIEKLKFISEMKQLISLDISYNRIDGEGAKLISEMKQLTSLNINGNVIGGEGAKFISGMK 180
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L SL + +I G ++ + L LD+ G +I D + K L SL I +
Sbjct: 181 QLTSLYIYNNRIGGEGAKYISEMKQLISLDIGGNQIGDEEVKLISEMKQLTSLNIANNVI 240
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
DAG K I D+ LT LN+S N + D+ + I+ + L SLN++ + I +AG + + +
Sbjct: 241 GDAGAKFIGDMKQLTSLNISYNV-IGDEGAKYINEMKQLTSLNITRNEIGNAGAKFISEM 299
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
K L SL + ++ K + ++ L+S R
Sbjct: 300 KQLTSLDIAGNRIGGEGAKFIS--EMKQLISLRK 331
>gi|384253405|gb|EIE26880.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 641
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/474 (26%), Positives = 193/474 (40%), Gaps = 100/474 (21%)
Query: 55 QGSSLLSVDLSGSDVTDSG---------LIHLKDCSNLQSLD-FNFCIQISDGGLEHLRG 104
+G++L +DLSG D+T L L+ + Q L ++ C Q+ D E L
Sbjct: 57 RGTTLRKLDLSGCDLTMPAGTLLDLLWNLTQLEHLAIAQQLPKYDACFQVDDELCEALGR 116
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RIHGGLVNLKGLMKLESLNI- 162
+ LT L R+ + IT +G+ AGL L L L C + ++ +L L+I
Sbjct: 117 MRGLTHLDLRQPSPITGRGLDRLAGLERLRTLRLGPCAGLLDSSFQSIACHTQLTELDIC 176
Query: 163 -----KWCNCITDSDMKPLSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ C + + L+ L NL SLQ++ S+ D + L L LT L L
Sbjct: 177 FGEKGRTCTSLPAEVLAQLATLPNLVSLQLAGFDTSRTED--LPSLHCLSTLTHLGLSQV 234
Query: 215 -----PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEG 268
P A + SL L LN+C + D S+ T L +L++ C +
Sbjct: 235 TNSRSPGGVATFLRCMPIQSLIRLELNQCNIGIDVFPLISQATTLRALSVTQCSPVYGLD 294
Query: 269 LVNLTGLCNLKCLELSDTQVGSSG---LRHL----------------------------- 296
L +++GL L+ L L + SS L+HL
Sbjct: 295 LHHMSGLSRLESLTLDHSHPLSSNWSFLQHLTRLTQFSCAAHKDALPMSSDHNIAGLLEN 354
Query: 297 ------------------------SGLTNLESINLSFTGISDGS-----------LRKLA 321
+ LT L +++S G S L +LA
Sbjct: 355 AIARKDLQRLDLRGHLLGKELGDIAALTALTELDISAAGCDVASHPSIACVFNLGLAQLA 414
Query: 322 GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
GLS L+ LNL + + GL + S L L HLDL G+ + D+ A+L L+SL I
Sbjct: 415 GLSRLQRLNLACTAVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRIN 474
Query: 381 GGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
++DAG+ + +S+L L + N +T L+ +S LTGL L+VS+
Sbjct: 475 NQPALDDISDAGLAEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSD 528
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN---FCIQISDGGL 99
V+++ + I S LL +DLSGS V D+ L HL LQSL N ISD GL
Sbjct: 428 AVDEEGLRGICSGLRELLHLDLSGSAVEDADLAHLTKLPRLQSLRINNQPALDDISDAGL 487
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKL 157
+ +S L L + N ITA G+K + L L LD+ C+ I+ L +L+G L
Sbjct: 488 AEVSRVSALRCLEVKGNQCITAAGLKHLSALTGLSDLDVSDCSAINPKRALNSLQGCTAL 547
Query: 158 ESL 160
L
Sbjct: 548 RML 550
>gi|320166209|gb|EFW43108.1| ephrin type-B receptor 3 [Capsaspora owczarzaki ATCC 30864]
Length = 1219
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 119/270 (44%), Gaps = 1/270 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L LQ++ + +T L LT L+L P+T+ +S +
Sbjct: 63 NQITSISANAFAGLTALTDLQLNNNNITIIPDYTFANLPALTELHLFFNPITSISANSFA 122
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L L LN CQ++ F+ L+ L ++ + I +G+ LK L L+
Sbjct: 123 GLTVLNLLNSYNCQITSIAANAFTDLSKLTNMQMSGNQITSIAPNVFSGMSALKILYLNG 182
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
Q+ S +GLT L ++L IS +L G+S+LK L L+ QIT T
Sbjct: 183 NQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSALKILRLNINQITGISAGVFT 242
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
L+ L L L +IT A L L + +T DL +LT L LS
Sbjct: 243 DLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQITSISPGAFTDLGALTTLILST 302
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITS 435
N +T + +GLT L L + ++ITS
Sbjct: 303 N-KITSISENAFTGLTALTFLQLDANQITS 331
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 170/416 (40%), Gaps = 40/416 (9%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL D ++L FN QI+ GL+ LT L NN IT FA L L +
Sbjct: 54 HLGD----RTLSFN---QITSISANAFAGLTALTDLQLNNNN-ITIIPDYTFANLPALTE 105
Query: 136 LDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
L L T I + GL L LN C IT + L+ L ++Q+S +++T
Sbjct: 106 LHLFFNPITSISAN--SFAGLTVLNLLNSYNCQ-ITSIAANAFTDLSKLTNMQMSGNQIT 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
G+ L +L L G +T+ + + L +L YL+L+ Q+S F ++
Sbjct: 163 SIAPNVFSGMSALKILYLNGNQITSISASAFTGLTALTYLSLDSNQISSIALNAFPGMSA 222
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---SFT 310
L+ L L+ I T L LK L L+D Q+ S +GLT L + L T
Sbjct: 223 LKILRLNINQITGISAGVFTDLSALKELWLNDNQITSISANAFTGLTALTFLRLYVNQIT 282
Query: 311 GISDGSLRKL---------------------AGLSSLKSLNLDARQITDTGLAALTSLTG 349
IS G+ L GL++L L LDA QIT A T L
Sbjct: 283 SISPGAFTDLGALTTLILSTNKITSISENAFTGLTALTFLQLDANQITSISAGAFTDLGA 342
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
LT L L IT A L +L + L L++L L L N +
Sbjct: 343 LTTLILSINTITSISANAFTGLTALTALYLQQNQLDSISAIAFTGLTALRELWLQVNL-I 401
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT--LESCKVTANDIK 463
T + S LT LV + ++ + T+ K L+N+ L+ L + +V+ + I
Sbjct: 402 TSISANAFSDLTTLVGIYLNRNPFTTLPPGLFKGLRNVSHLSRDLSTAQVSQSVIP 457
>gi|290972751|ref|XP_002669114.1| predicted protein [Naegleria gruberi]
gi|284082657|gb|EFC36370.1| predicted protein [Naegleria gruberi]
Length = 259
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 110/220 (50%), Gaps = 1/220 (0%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L +N + +G S++ L +L++ + + +EG ++ L LKCL++ +G +G
Sbjct: 37 LTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNG 96
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++SG+ L +++ I + + ++ + L L + I G ++ L LTH
Sbjct: 97 AKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTH 156
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LD+ I G+ Y+ L L I + + GVKHI +++ LT L++ N ++ +
Sbjct: 157 LDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDN-EISAE 215
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ ISG+ L +L++S + I G + L +K L L
Sbjct: 216 GVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 4/214 (1%)
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
G D L+NL + + L ++ +G G H+S + L ++++ + + + + +
Sbjct: 19 EIGAFDYKLLNL--MKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYI 76
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ L LK L++ + I G ++ + LT LD+F I + GA + K L L+I
Sbjct: 77 SQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKIT 136
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ G K+I L LT L++S N ++ K + IS + L LN+ N+ I + G++H
Sbjct: 137 FNDIGTEGAKYISQLRKLTHLDISSN-DIGAKGSKYISEMNQLTILNIYNNDIGNEGVKH 195
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+ + L L + +++A +K + + L NL
Sbjct: 196 ISEMNQLTRLDIGDNEISAEGVKYISGMKQLTNL 229
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 131/282 (46%), Gaps = 39/282 (13%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGLVNLKGLM---KLESL 160
L N+T+L F+R + AF L+NL+K + T I+ + ++G M K+E L
Sbjct: 8 LQNVTNLLFKRE-------IGAFDYKLLNLMK-GITTLT-INYNSIGVEGAMHISKMEQL 58
Query: 161 -NIKWCNCI-TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
N+ CN + + K +S L LK L I + + +G Y+ G+++LT L++ +
Sbjct: 59 TNLDICNSVLYEEGAKYISQLEQLKCLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICE 118
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
S+S + L +L + + +G + S+L L L++ S IG +G ++ + L
Sbjct: 119 EGAKSISEMKQLTHLKITFNDIGTEGAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQL 178
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L + + +G+ G++H+S + + L L++ +I+
Sbjct: 179 TILNIYNNDIGNEGVKHISEM------------------------NQLTRLDIGDNEISA 214
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
G+ ++ + LT+LD+ I D GA +L K L LE
Sbjct: 215 EGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEFI 256
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 110/232 (47%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D K L+ + + +L I+ + + G ++ +++LT L++ + +S L L
Sbjct: 24 DYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYISQLEQLK 83
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L++ + +G + S + L L++ + I +EG +++ + L L+++ +G+
Sbjct: 84 CLDIGSNSIGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHLKITFNDIGTE 143
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G +++S L L +++S I + ++ ++ L LN+ I + G+ ++ + LT
Sbjct: 144 GAKYISQLRKLTHLDISSNDIGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLT 203
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
LD+ I+ G Y+ K L +L+I + D G + + + L L
Sbjct: 204 RLDIGDNEISAEGVKYISGMKQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 3/212 (1%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
G +H+ L +LD + + + G +++ L L L +N+I G K +G+
Sbjct: 47 EGAMHISKMEQLTNLDICNSV-LYEEGAKYISQLEQLKCLDIG-SNSIGKNGAKYISGMK 104
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
L +LD+ T G ++ + +L L I + N I K +S L L L IS +
Sbjct: 105 QLTRLDIFNNTICEEGAKSISEMKQLTHLKITF-NDIGTEGAKYISQLRKLTHLDISSND 163
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+ G Y+ + +LT+LN+ + + +S + L L++ ++S +G + S +
Sbjct: 164 IGAKGSKYISEMNQLTILNIYNNDIGNEGVKHISEMNQLTRLDIGDNEISAEGVKYISGM 223
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L +L++ IGDEG L+ + L LE
Sbjct: 224 KQLTNLDISWNNIGDEGAQFLSQMKQLIYLEF 255
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
R+I L + G+T L + I GA ++ + L +L+IC L + G K+I
Sbjct: 18 REIGAFDYKLLNLMKGITTLTINYNSIGVEGAMHISKMEQLTNLDICNSVLYEEGAKYIS 77
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L L L++ N + + ISG+ L L++ N+ I G + + +K L L
Sbjct: 78 QLEQLKCLDIGSNS-IGKNGAKYISGMKQLTRLDIFNNTICEEGAKSISEMKQLTHL--- 133
Query: 454 SCKVTANDI 462
K+T NDI
Sbjct: 134 --KITFNDI 140
>gi|440712554|ref|ZP_20893170.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
gi|436442709|gb|ELP35820.1| hypothetical protein RBSWK_00227 [Rhodopirellula baltica SWK14]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L ++L PVT L S+S L L LNL +++ + E S+L
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 5/257 (1%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L + S + LF + SD + + L NL+ L + D +++GL L
Sbjct: 89 LSNTSTVSELF---MPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVA 145
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+ DT V G L+ L L+ ++L + ++D +L ++ L L LNL +IT
Sbjct: 146 VTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEA 205
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ L L L+L G + N + L + + + + +K + +SLT+
Sbjct: 206 FEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTV 264
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LN+ +T++ + +I L L L++ + ++ L LKPL+ L +L + + +
Sbjct: 265 LNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEE 324
Query: 461 DIKRLQSRDLPNLVSFR 477
K L++ PNL F
Sbjct: 325 PAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V+ + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKEL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|320163290|gb|EFW40189.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 830
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 161/374 (43%), Gaps = 54/374 (14%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
L F I G +L L +L+ +S + IT+ AFAGL+ L +L+L R
Sbjct: 19 LYFTDITSIPAGTFANLTALESLSLVSGQ----ITSVSPNAFAGLVALTELNLRR----- 69
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
N ++ +GLT L+ L + +++T L
Sbjct: 70 --------------------NPLSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPA 109
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
LT L+L +T ++ + LG+L L+L QL+ F+ L L +L L S I
Sbjct: 110 LTSLSLTDNQLTTIPENAFAGLGALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIV 169
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
++ TGL L L +++ V + L GL LE ++L + I+ S AGL S
Sbjct: 170 SMAAISFTGLAGLTTLIMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLS 229
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+SL++ A + GLT L LF N L +L + LT
Sbjct: 230 LRSLDISAN-----------AFAGLTALTLF-------------NLTALHTLTLENNLLT 265
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
LS+LT L+L+ N LT + SGL+ L SL ++N+ T+ L
Sbjct: 266 SISANAFSGLSALTWLHLAYN-RLTSISANAFSGLSALSSLYLNNNPCTAIAAEAFNGLT 324
Query: 446 NLRSLTLESCKVTA 459
+L+SLTL + ++T+
Sbjct: 325 SLKSLTLVANQLTS 338
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 165/420 (39%), Gaps = 28/420 (6%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
DL +D+T + + L+SL QI+ GL LT L+ RRN ++A
Sbjct: 18 DLYFTDITSIPAGTFANLTALESLSL-VSGQITSVSPNAFAGLVALTELNLRRN-PLSAV 75
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
AF GL L +L+L E T +L L L SL I ++ L L
Sbjct: 76 PTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSL-SLTDNQLTTIPENAFAGLGAL 134
Query: 180 TNL---------------------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
TNL +LQ+ +K+ GL LT L + VT
Sbjct: 135 TNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNLVTT 194
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
++L L +L L+L ++ F+ L +L SL++ + + L L L
Sbjct: 195 IPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNLTAL 254
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L + + S SGL+ L ++L++ ++ S +GLS+L SL L+ T
Sbjct: 255 HTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYLNNNPCTA 314
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
A LT L L L ++T A L L + + L L
Sbjct: 315 IAAEAFNGLTSLKSLTLVANQLTSISANAFVGLNALTYLYLQNNRIVSFSADAFTGLPVL 374
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L++ N +T +GLT LV L + ++ITS L LR L L S ++T
Sbjct: 375 IYLDIYSNP-ITSIPSNAFTGLTKLVFLRLDTNQITSISANAFTELSALRGLWLHSNRIT 433
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 127/310 (40%), Gaps = 12/310 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTRIHGGLVNLKGLMKLES 159
GL+ LT+L NN +T A GL L LDL T + G GL+ L S
Sbjct: 176 FTGLAGLTTL-IMNNNLVTTIPENALPGLAALEVLDLRYNSITSVSGNA--FAGLLSLRS 232
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG---CPV 216
L+I N L LT L +L + + +T GL LT L+L +
Sbjct: 233 LDIS-ANAFAGLTALTLFNLTALHTLTLENNLLTSISANAFSGLSALTWLHLAYNRLTSI 291
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+A LSAL SL YLN N C + E F+ LT+L+SL L + + GL
Sbjct: 292 SANAFSGLSALSSL-YLNNNPC--TAIAAEAFNGLTSLKSLTLVANQLTSISANAFVGLN 348
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L L + ++ S +GL L +++ I+ GL+ L L LD QI
Sbjct: 349 ALTYLYLQNNRIVSFSADAFTGLPVLIYLDIYSNPITSIPSNAFTGLTKLVFLRLDTNQI 408
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
T A T L+ L L L RIT A L +L + LT K L
Sbjct: 409 TSISANAFTELSALRGLWLHSNRITTLSANAFIGLTALTNLPLNDNPLTTTPPGLFKGLP 468
Query: 397 SLTLLNLSQN 406
+ L+ S N
Sbjct: 469 NSLFLSYSSN 478
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 129/307 (42%), Gaps = 31/307 (10%)
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
TN + + +T L L L+L +T+ ++ + L +L LNL R
Sbjct: 12 TNTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNP 71
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
LS F+ LT L+ LNLD I L L L L+D Q+ + +GL
Sbjct: 72 LSAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGL 131
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAALT-------- 345
L +++L+ ++ AGL +L +L L + +I TGLA LT
Sbjct: 132 GALTNLDLTENQLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL 191
Query: 346 -------SLTGLTHLDLFGAR---ITDSGAAYLRNFKNLRSLEICG---GGLTDAGVKHI 392
+L GL L++ R IT +LRSL+I GLT + ++
Sbjct: 192 VTTIPENALPGLAALEVLDLRYNSITSVSGNAFAGLLSLRSLDISANAFAGLTALTLFNL 251
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L +LTL +N LT + SGL+ L L+++ +R+TS L L SL L
Sbjct: 252 TALHTLTL----ENNLLTSISANAFSGLSALTWLHLAYNRLTSISANAFSGLSALSSLYL 307
Query: 453 ESCKVTA 459
+ TA
Sbjct: 308 NNNPCTA 314
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 95/230 (41%), Gaps = 6/230 (2%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
F+ LT LESL+L S I GL L L L + + +GLT L+ +NL
Sbjct: 32 FANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPLSAVPTSAFTGLTALQRLNL 91
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
I+ S L +L SL+L Q+T A L LT+LDL ++T
Sbjct: 92 DHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLGALTNLDLTENQLTTIPENA 151
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L +L++ + L+ LT L ++ N +T + GL L L+
Sbjct: 152 FAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNNNL-VTTIPENALPGLAALEVLD 210
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
+ + ITS L +LRSL ++AN L + L NL +
Sbjct: 211 LRYNSITSVSGNAFAGLLSLRSL-----DISANAFAGLTALTLFNLTALH 255
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
N +L T + S + LT LES++L I+ S AGL +L LNL +
Sbjct: 13 NTTQFDLYFTDITSIPAGTFANLTALESLSLVSGQITSVSPNAFAGLVALTELNLRRNPL 72
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+ +A T LT L L+L IT A + L SL + LT L
Sbjct: 73 SAVPTSAFTGLTALQRLNLDHNEITTLSANAFPHLPALTSLSLTDNQLTTIPENAFAGLG 132
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+LT L+L++N LT +GL L +L + +++I S L L +L + +
Sbjct: 133 ALTNLDLTEN-QLTTIPENAFAGLGALTNLQLPSNKIVSMAAISFTGLAGLTTLIMNN-- 189
Query: 457 VTANDIKRLQSRDLPNLVSFR 477
N + + LP L +
Sbjct: 190 ---NLVTTIPENALPGLAALE 207
>gi|421610748|ref|ZP_16051914.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
gi|408498532|gb|EKK03025.1| leucine-rich repeat domain protein [Rhodopirellula baltica SH28]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 27/251 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L ++L PVT L S+S L L LNL +++ + E S+L
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIKDL 395
+ K ++ +
Sbjct: 322 EEEPAKELEAM 332
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 5/257 (1%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L + S + LF + SD + + L NL+ L + D +++GL L
Sbjct: 89 LSNTSTVSELF---MPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVA 145
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+ DT V G L+ L L+ ++L + ++D +L ++ L L LNL +IT
Sbjct: 146 VTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEA 205
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ L L L+L G + N + L + + + + +K + +SLT+
Sbjct: 206 FEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTV 264
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LN+ +T++ + +I L L L++ + ++ L LKPL+ L +L + + +
Sbjct: 265 LNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEE 324
Query: 461 DIKRLQSRDLPNLVSFR 477
K L++ PNL F
Sbjct: 325 PAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V+ + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKEL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|300694035|ref|YP_003750008.1| type III effector protein [Ralstonia solanacearum PSI07]
gi|299076072|emb|CBJ35382.1| putative leucine-rich-repeat type III effector protein (GALA1-like)
[Ralstonia solanacearum PSI07]
Length = 590
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 186/426 (43%), Gaps = 32/426 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC-IQISDGGLEHLRGLSNLTSLSFRR 115
++L + LSG DVTD L L ++L++LD + C QI+ G+ HL L L L+
Sbjct: 121 AALEKLTLSG-DVTDDDLKGLP--ASLKALDLSDCRAQITSEGIAHLSKLP-LVRLNVSH 176
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N I A+G + A + L +LD+ G L L LN+ N I D +
Sbjct: 177 NR-IDAEGARLLAAMPTLTELDISHNDIRADGAQALADSATLTLLNVG-NNRIGDRGAQA 234
Query: 176 LSGLTNLKSLQI------------------------SCSKVTDSGIAYLKGLQKLTLLNL 211
L+ T L SL SC+ + + L LT LN+
Sbjct: 235 LAANTKLTSLNASANGIGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV 294
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+ A +L+A +L LN++ ++ +G + + T+L SL++ +G +G
Sbjct: 295 RLSRLGDAGARALAATTTLTSLNVSLNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQA 354
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L L + ++ +G + L+ T L S+++S G+ R +L SL +
Sbjct: 355 LATSMTLTSLVIHRNRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRI 414
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I D G L T LT LD+ RI ++GA L L SL I G + GV
Sbjct: 415 ATNMIGDEGAKWLARNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLR 474
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ ++L LN+S+N +L T L SL V+ + I + G R L K L SL+
Sbjct: 475 LARNTTLAALNVSRNQIGVAGAQDLARNTT-LRSLVVNYNEIGNEGARALAGNKTLASLS 533
Query: 452 LESCKV 457
+ C++
Sbjct: 534 VVDCRI 539
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 160/376 (42%), Gaps = 27/376 (7%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN- 116
+L +D+S +D+ G L D + L L+ +I D G + L + LTSL+ N
Sbjct: 192 TLTELDISHNDIRADGAQALADSATLTLLNVGNN-RIGDRGAQALAANTKLTSLNASANG 250
Query: 117 ----------------------NAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKG 153
+I + +A A L L++ R +R+ G L
Sbjct: 251 IGSAGVQALAANATLAALDLSCTSIDEESAQALARNTTLTSLNV-RLSRLGDAGARALAA 309
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L SLN+ N I K L+ T+L SL I +KV G L LT L +
Sbjct: 310 TTTLTSLNVS-LNEIGPEGAKALANNTSLTSLDIGGNKVGVDGAQALATSMTLTSLVIHR 368
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ A +L+ L L+++ L G F L SL + + IGDEG L
Sbjct: 369 NRIEVAGAQALANNTRLTSLDISDNGLGVWGARAFVDNETLTSLRIATNMIGDEGAKWLA 428
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L L++ + ++G +G + L+G T L S+N+S I + +LA ++L +LN+
Sbjct: 429 RNTTLTSLDIGENRIGETGAQALAGNTKLTSLNISGNAIGMMGVLRLARNTTLAALNVSR 488
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QI G L T L L + I + GA L K L SL + + D G +
Sbjct: 489 NQIGVAGAQDLARNTTLRSLVVNYNEIGNEGARALAGNKTLASLSVVDCRIGDEGAHALA 548
Query: 394 DLSSLTLLNLSQNCNL 409
++L LL++S N ++
Sbjct: 549 ANTTLALLDVSLNRHI 564
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 652
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 218/459 (47%), Gaps = 33/459 (7%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTD--SGLI 75
LT+V+ +A + L+ LCLG+ G+ D + IA + S L V L VTD +GLI
Sbjct: 139 LTDVAAKAIAEAVNLERLCLGRCKGITDLGIGCIAVRCSKLRHVGLRWCIRVTDFGAGLI 198
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AGLINLV 134
+K C ++SLD ++ + I++ L H+ L +L L I G+ A ++
Sbjct: 199 AIK-CKEIRSLDLSY-LPITEKCLNHILQLEHLEDLILEHCLGIEDHGLATLQASCKSMK 256
Query: 135 KLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L+L +C I H G+ +L G LE L + +T K L + L+S+++
Sbjct: 257 MLNLSKCQNIGHIGIASLTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQSVKLDSCLG 316
Query: 193 TDSGIAYLKGL-QKLTLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFS 249
T SG+ + L L LNL C VT L L L L++ C S
Sbjct: 317 TKSGLKAIGNLGASLKELNLSKCVGVTDENLPFLVQPHKDLEKLDITCCHTITHA--SIS 374
Query: 250 RLTN----LESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLE 303
LTN L SL ++SC + EG + G C L+ L+++DT++ GL+ +S T L
Sbjct: 375 SLTNSCLRLTSLRMESCSLVSREGFL-FIGRCQLLEELDVTDTEIDDQGLQSISRCTKLS 433
Query: 304 SINLSF-TGISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL----F 356
S+ L + I+D L+ +A S LK L+L + +ITD G+ A+ G L++ +
Sbjct: 434 SLKLGICSMITDNGLKHIASSCSKLKQLDLYRSSRITDEGIVAIA--LGCPSLEVVNIAY 491
Query: 357 GARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDK-T 413
+ TD+ +L + LR+LEI G ++ G+ +I L +L++ + + D
Sbjct: 492 NSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSNIVARCRYLEMLDIKKCHKINDTGM 551
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++L L + +S +T GL L + L+ +++
Sbjct: 552 IQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQHISI 590
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +D++ +++ D GL + C+ L SL C I+D GL+H+ S L L R++
Sbjct: 408 LEELDVTDTEIDDQGLQSISRCTKLSSLKLGICSMITDNGLKHIASSCSKLKQLDLYRSS 467
Query: 118 AITAQGMKAFA------GLINLV--------------------KLDLERCTRIHG-GLVN 150
IT +G+ A A ++N+ L++ C RI GL N
Sbjct: 468 RITDEGIVAIALGCPSLEVVNIAYNSNTTDTSLEFLSKCQKLRTLEIRGCPRISPKGLSN 527
Query: 151 LKGLMK-LESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ + LE L+IK C+ I D+ M L+ + NLK +++S VTD G +A + LQ
Sbjct: 528 IVARCRYLEMLDIKKCHKINDTGMIQLAQHSQNLKHIKLSYCSVTDVGLIALASISCLQH 587
Query: 206 LTLLNLEG 213
+++ ++EG
Sbjct: 588 ISIFHVEG 595
>gi|32477277|ref|NP_870271.1| G protein-coupled receptor LGR4 [Rhodopirellula baltica SH 1]
gi|32447828|emb|CAD77346.1| probable G protein-coupled receptor LGR4 [Rhodopirellula baltica SH
1]
Length = 341
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L ++L PVT L S+S L L LNL +++ + E S+L
Sbjct: 167 LQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 5/257 (1%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L + S + LF + SD + + L NL+ L + D +++GL L
Sbjct: 89 LSNTSTVSELF---MPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVA 145
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+ DT V G L+ L L+ ++L + ++D +L ++ L L LNL +IT
Sbjct: 146 VTFQDTSVTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLRGTKITGEA 205
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ L L L+L G + N + L + + + + +K + +SLT+
Sbjct: 206 FEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTV 264
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LN+ +T++ + +I L L L++ + ++ L LKPL+ L +L + + +
Sbjct: 265 LNVDNCPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEE 324
Query: 461 DIKRLQSRDLPNLVSFR 477
K L++ PNL F
Sbjct: 325 PAKELEAM-FPNLKRFE 340
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMKSPVTDKTLTSISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V+ + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKEL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|290993827|ref|XP_002679534.1| predicted protein [Naegleria gruberi]
gi|284093151|gb|EFC46790.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L G+ NL L +S Q+G G + +SG+ LE + L F + + ++ + +L SL +
Sbjct: 40 LQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFNNVGTEGAKYISEMENLTSLII 99
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--------- 382
+ I D G L+ + LT+LD+ I + G +RN LRS CG
Sbjct: 100 RSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGMRAIRNMTQLRSFVDCGSCALEEVSKM 159
Query: 383 -GLTDAGVKH------IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
LT V H I ++LT L++ C + D LELIS L L VSN+ ITS
Sbjct: 160 DQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTC-IGDNELELISKYPKLTKLFVSNNFITS 218
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIK 463
G++ L +K L++L + + +K
Sbjct: 219 EGVKPLSEMKQLKALHIGDNGINEEGVK 246
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 34/284 (11%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+ L G+ NL SL IS ++ G + G+++L L +
Sbjct: 38 RALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKL--------------------ILVF 77
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N + +G + S + NL SL + S IGDEG ++L+G+ L L++SD + G+
Sbjct: 78 N----NVGTEGAKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIREDGM 133
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
R + +T L SF +L +++ + L L++ + AA+ LT L
Sbjct: 134 RAIRNMTQLR----SFVDCGSCALEEVSKMDQLTYLDVSH----NLSGAAIGKFNNLTWL 185
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+ I D+ + + L L + +T GVK + ++ L L++ N + ++
Sbjct: 186 SMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDN-GINEEG 244
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK 456
+++IS + L LNV I+ L +K L+SL + C+
Sbjct: 245 VKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 17/285 (5%)
Query: 103 RGLSNLTSLSFRR--NNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
R L N+ L + +NAI + +A G+ NL L++ G + G+ +LE
Sbjct: 13 RFLGNIHRLMIYKLDDNAIYGEVFYRALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEK 72
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L + + N T+ K +S + NL SL I + + D G +L G++KLT L++ +
Sbjct: 73 LILVFNNVGTEG-AKYISEMENLTSLIIRSNNIGDEGAIHLSGMKKLTNLDVSDNMIRED 131
Query: 220 CLDSLSALGSLF-YLNLNRCQLSDDGCEKFSRLTNLE-SLNLDSCGIGDEGLVNLTGLCN 277
+ ++ + L +++ C L + K +LT L+ S NL IG N
Sbjct: 132 GMRAIRNMTQLRSFVDCGSCALEE--VSKMDQLTYLDVSHNLSGAAIGK--------FNN 181
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L + +T +G + L +S L + +S I+ ++ L+ + LK+L++ I
Sbjct: 182 LTWLSMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGIN 241
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICG 381
+ G+ ++ + LT L++ G I+++ L K L+SL I G
Sbjct: 242 EEGVKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNITG 286
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 37/281 (13%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A QG ++L S+++S + G + L+ L F + G +++ + NLTSL
Sbjct: 39 ALQGMNNLTSLNISSQQIGPEGAKLVSGVKQLEKLILVFN-NVGTEGAKYISEMENLTSL 97
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
R NN G ++L G+ KL +L++ N I +
Sbjct: 98 IIRSNNIGDE-------------------------GAIHLSGMKKLTNLDVS-DNMIRED 131
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
M+ + +T L+S + C + + + +LT L++ AA + +L
Sbjct: 132 GMRAIRNMTQLRSF-VDCGSC---ALEEVSKMDQLTYLDVSHNLSGAA----IGKFNNLT 183
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L++ + D+ E S+ L L + + I EG+ L+ + LK L + D +
Sbjct: 184 WLSMVNTCIGDNELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEE 243
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNL 331
G++ +S + L +N+ IS+ L + S LKSLN+
Sbjct: 244 GVKIISEMKQLTELNVEGLNISENDREVLLCMKSQLKSLNI 284
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 42/213 (19%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
++V G ++ + NL SL I D G HL G+ LT+L +N I GM+A
Sbjct: 78 NNVGTEGAKYISEMENLTSLIIR-SNNIGDEGAIHLSGMKKLTNLDVS-DNMIREDGMRA 135
Query: 127 FAGLINLVKL------DLERCTRIHGGLV-----NLKGLMKLESLNIKWC---------- 165
+ L LE +++ NL G + N+ W
Sbjct: 136 IRNMTQLRSFVDCGSCALEEVSKMDQLTYLDVSHNLSGAAIGKFNNLTWLSMVNTCIGDN 195
Query: 166 ------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
N IT +KPLS + LK+L I + + + G+ + +++LT
Sbjct: 196 ELELISKYPKLTKLFVSNNFITSEGVKPLSEMKQLKALHIGDNGINEEGVKIISEMKQLT 255
Query: 208 LLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQ 239
LN+EG ++ + L + S L LN+ C+
Sbjct: 256 ELNVEGLNISENDREVLLCMKSQLKSLNITGCE 288
>gi|406830657|ref|ZP_11090251.1| hypothetical protein SpalD1_03434 [Schlesneria paludicola DSM
18645]
Length = 254
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
LK + LT L++ G +T A + + L SL L L++ Q+SD G + L NL +L++
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
GI +EG+ ++ L L+ L L T + GL L LT+L +NL + ++D +
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANV 188
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
L+ L+SL +L+L +I+D GLA+ L LT L + T +G L+
Sbjct: 189 LSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK 238
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 2/179 (1%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L +L +++S T I++ + ++ L+SL +L L QI+D GL+ L SL LT L +
Sbjct: 69 LKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHI 128
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G I++ G + LR L + +T+ G+ +K L+ L+ LNL NL D
Sbjct: 129 VGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIH-SNLNDDAAN 187
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
++S LT L +L++ + I+ GL L NL LT + K T + L+ + LPNL+
Sbjct: 188 VLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEALK-QALPNLM 245
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+D+SG+ +T++G+ + ++L +L + QISD GL LR L NLT+L N I+
Sbjct: 78 LDVSGTTITNAGMPEIGKLTSLTALYLSKS-QISDAGLSELRSLKNLTTLHIV-GNGISN 135
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+GM++ L L L L R T GL LK L L LN+ N + D LS LT+
Sbjct: 136 EGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSN-LNDDAANVLSELTS 194
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
L +L + ++++D G+A L LT+L + T A ++L
Sbjct: 195 LTTLHLGRNEISDVGLASFNKLNNLTILTYQRNKTTLAGEEAL 237
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Query: 161 NIKWCNC----ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
++ W + IT++ M + LT+L +L +S S+++D+G++ L+ L+ LT L++ G +
Sbjct: 74 DLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNLTTLHIVGNGI 133
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+ + S+ L L L+L R ++++G + +LT+L LNL + D+ L+ L
Sbjct: 134 SNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLNDDAANVLSELT 193
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNL 302
+L L L ++ GL + L NL
Sbjct: 194 SLTTLHLGRNEISDVGLASFNKLNNL 219
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF---------YLNLNRCQLSD 242
V + I K ++K+ LL G ++ A + + +G F YLNL
Sbjct: 19 VAEEIIDEEKAIEKIALL---GGKISRADTPNRTVIGVNFKGNKKFNYKYLNL------- 68
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+ F LT L++ I + G+ + L +L L LS +Q+ +GL L L NL
Sbjct: 69 --LKPFRDLT---WLDVSGTTITNAGMPEIGKLTSLTALYLSKSQISDAGLSELRSLKNL 123
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
++++ GIS+ +R + L L+ L+L IT+ GL L LT L+ L+L + + D
Sbjct: 124 TTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHLSDLNLIHSNLND 183
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
A L +L +L + ++D G+ L++LT+L +N
Sbjct: 184 DAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTILTYQRN 227
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
++F+ N + + +L LD+ T + G+ + L L +L + I+D
Sbjct: 53 VNFKGNKKFNYKYLNLLKPFRDLTWLDVSGTTITNAGMPEIGKLTSLTALYLSKSQ-ISD 111
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ + L L NL +L I + +++ G+ + L +L +L+L +T L L L L
Sbjct: 112 AGLSELRSLKNLTTLHIVGNGISNEGMRSIGELDELRILHLGRTTITEEGLHELKKLTHL 171
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
LNL L+DD S LT+L +L+L I D GL + L NL L
Sbjct: 172 SDLNLIHSNLNDDAANVLSELTSLTTLHLGRNEISDVGLASFNKLNNLTIL 222
>gi|413916550|gb|AFW56482.1| hypothetical protein ZEAMMB73_356315 [Zea mays]
Length = 660
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 218/473 (46%), Gaps = 48/473 (10%)
Query: 34 QDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCI 92
+ +CL + GV + ++ + + L +VDLS D L S L+ L + C+
Sbjct: 108 RSVCLARANGVGWRGLEALVAACPKLAAVDLSHCVTAGDREAAALAAASELRDLRLDKCL 167
Query: 93 QISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
++D GL + G L LS + I+ G+ A L L++ +G L +
Sbjct: 168 AVTDMGLAKVAVGCPKLEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGS 227
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL----KGLQ 204
+ L +LE L + C+ I D ++ LS G +L+S+ +S C VT G+A L LQ
Sbjct: 228 ISSLERLEELAMVCCSGIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQ 287
Query: 205 KLTLLN------------------------LEGCPVTAACLDSL-SALGSLFYLNLNRCQ 239
KL + L+G V+ + L ++ + L + L++C
Sbjct: 288 KLYAADCLHEIGQRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESCNKLVEIGLSKCS 347
Query: 240 LSDDG--CEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLEL-SDTQVGSSGLR 294
DG +R ++L +++L C I + L ++ C L+CL L S + + GL
Sbjct: 348 GVTDGGISSLVARCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRLESCSLINEKGLE 407
Query: 295 HLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LT 351
++ NL+ I+L+ G+ D +L+ LA S L+ L L I+D G+A ++S G L
Sbjct: 408 RITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRGIAFISSNCGKLV 467
Query: 352 HLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL+ ITD G A L N K ++ L +C +TD G+ H+ L LT L L
Sbjct: 468 ELDLYRCNSITDDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLELRCLVR 527
Query: 409 LTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
+T + ++ G L+ L++ + AGL L NLR LT+ C+VT
Sbjct: 528 VTGIGISSVAIGCKNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 580
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K ++ I + +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 401 INEKGLERITTCCPNLKEIDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRGIAFIS 460
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G +++ LN+
Sbjct: 461 SNCGKLVELDLYRCNSITDDGLAALA-----------------------NGCKRIKLLNL 497
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C +VT GI+ V C
Sbjct: 498 CYCNKITDTGLGHLGSLEELTNLELRCLVRVTGIGIS----------------SVAIGC- 540
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
+L L+L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 541 ------KNLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 592
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ G L+KL L LK++
Sbjct: 593 CLQ--DIK-----MVHLSWVS-IEGFEMALRAAC-GRLKKLKMLCGLKTV 633
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 26/344 (7%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ L L ++D +D++A + L S+++S V + L + L+ L C
Sbjct: 184 LEKLSLKWCREISDIGIDLLAKKCPELRSLNISYLKVGNGSLGSISSLERLEELAMVCCS 243
Query: 93 QISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN 150
I D GLE L +G +L S+ R + +T++G+ + G L KL C +H +
Sbjct: 244 GIDDEGLELLSKGSDSLQSVDVSRCDHVTSEGLASLIDGRNFLQKLYAADC--LHE--IG 299
Query: 151 LKGLMKLESLNIKWCNC------ITDSDMKPLSGLTNLKSLQI---SCSKVTDSGIAYLK 201
+ L KL L ++DS ++ + N K ++I CS VTD GI+ L
Sbjct: 300 QRFLSKLARLKETLTLLKLDGLEVSDSLLQAIGESCN-KLVEIGLSKCSGVTDGGISSLV 358
Query: 202 G-LQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQL-SDDGCEKFSRL-TNLES 256
L ++L C +T LDS++ L L L C L ++ G E+ + NL+
Sbjct: 359 ARCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRLESCSLINEKGLERITTCCPNLKE 418
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSG-LTNLESINL-SFTGIS 313
++L CG+ D L +L L+ L+L + + G+ +S L ++L I+
Sbjct: 419 IDLTDCGVDDAALQHLAKCSELRILKLGLCSSISDRGIAFISSNCGKLVELDLYRCNSIT 478
Query: 314 DGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 355
D L LA G +K LNL +ITDTGL L SL LT+L+L
Sbjct: 479 DDGLAALANGCKRIKLLNLCYCNKITDTGLGHLGSLEELTNLEL 522
>gi|290991638|ref|XP_002678442.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
gi|284092054|gb|EFC45698.1| leucine rich repeat domain-containing protein [Naegleria gruberi]
Length = 646
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 163/346 (47%), Gaps = 36/346 (10%)
Query: 64 LSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITA 121
L+ S VT +GL L+ S+ +S+ C +++G L+ L L +L SL+ NN I +
Sbjct: 256 LTSSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKS 315
Query: 122 QGMKAFAG--LINLVKLDL-------ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
G K A L +L++L+L + C + G GL+ L LN+ C D+
Sbjct: 316 NGCKYLANGNLNHLIQLNLSGNRIYSKGCQYLSNG-----GLLTLTHLNLSCCALDFDAC 370
Query: 173 MKPLSG-LTNLKSLQISCSKVTDSGIAYL--KGLQKLTLLNLEGCPVTAA--CLDSLSAL 227
+G L NL L +S + + SGI ++ + LT L+LE C V + + +
Sbjct: 371 QYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLESCEVRPSDCAFIGNADV 430
Query: 228 GSLFYLNLNRCQLSDDGCEKFSR--LTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLEL 283
SL YLN++ +SD+GC+ ++ +L+ L L C IG G LT G+ L L +
Sbjct: 431 SSLVYLNISNNPISDEGCKNLAKAQFLSLQDLYLRDCQIGSSGFAELTANGIGKLTKLYV 490
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
+ +G G ++S L L +++S + R ++ L L+ L + + +G
Sbjct: 491 DNNNIGDEGCLNISSLPFLNLLSVSNNNLGSKGCRCISLLPQLQHLTISRNNVGSSGCLY 550
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L +L+ L +LDL G I D+G L C G LT+ V
Sbjct: 551 LNALSKLEYLDLVGNDIRDAGCEIL-----------CNGSLTNVRV 585
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 141/341 (41%), Gaps = 61/341 (17%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSL-QISCSKVTDSGIAYLKG-- 202
GL +L+ + S+ K C + + +K L+ L +L+SL + + + + +G YL
Sbjct: 266 GLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNGCKYLANGN 325
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSR--LTNLESLN 258
L L LNL G + + LS G +L +LNL+ C L D C+ L NL LN
Sbjct: 326 LNHLIQLNLSGNRIYSKGCQYLSNGGLLTLTHLNLSCCALDFDACQYLGNGNLKNLVQLN 385
Query: 259 LDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L G G + + N + NL L L +V S + +F G +D
Sbjct: 386 LSKNMLIGSGIQFIFN-GNMPNLTWLSLESCEVRPS--------------DCAFIGNAD- 429
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
+SSL LN+ I+D G L L+ DL+ LR
Sbjct: 430 -------VSSLVYLNISNNPISDEGCKNLAKAQFLSLQDLY-----------------LR 465
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+I G + I L+ L + N N+ D+ IS L L L+VSN+ + S
Sbjct: 466 DCQIGSSGFAELTANGIGKLTKLYV----DNNNIGDEGCLNISSLPFLNLLSVSNNNLGS 521
Query: 436 AGLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDL 470
G R + L L+ LT+ V + N + +L+ DL
Sbjct: 522 KGCRCISLLPQLQHLTISRNNVGSSGCLYLNALSKLEYLDL 562
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 290 SSGLRHLSGLTNLESINLSFT-------GISDGSLRKLAGLS-SLKSLN-LDARQITDTG 340
SS + L+GLT+LE ++ + +++G L+ L L SL+SLN + I G
Sbjct: 258 SSAVTSLTGLTSLEMVSSHRSIGSKGCKYLANGKLKCLTSLDVSLESLNETNNNGIKSNG 317
Query: 341 LAALTS--LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L + L L L+L G RI G YL N GG LT L
Sbjct: 318 CKYLANGNLNHLIQLNLSGNRIYSKGCQYLSN----------GGLLT------------L 355
Query: 399 TLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLES 454
T LNLS C L + + L LV LN+S + + +G++ + + NL L+LES
Sbjct: 356 THLNLSC-CALDFDACQYLGNGNLKNLVQLNLSKNMLIGSGIQFIFNGNMPNLTWLSLES 414
Query: 455 CKVTANDIKRLQSRDLPNLV 474
C+V +D + + D+ +LV
Sbjct: 415 CEVRPSDCAFIGNADVSSLV 434
>gi|434399050|ref|YP_007133054.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
gi|428270147|gb|AFZ36088.1| leucine-rich repeat-containing protein [Stanieria cyanosphaera PCC
7437]
Length = 842
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 183/384 (47%), Gaps = 46/384 (11%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLE---HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+KD S LQSL + + +E L+ L NLTSLS R A+ + L NL
Sbjct: 169 IKDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVR---VYDAKNLIPLKYLTNL 225
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSK 191
+L + R +++ + L+ L KL L+++ + SD+ L LTNL L ++
Sbjct: 226 TQLSV-RASQL-NNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYG 283
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPV------------TAACL--------DSLSALGSLF 231
D ++ L+ L LT L L+G + T+ CL SL AL L
Sbjct: 284 TID--LSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLT 341
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L LN+ Q+SD LTNL SL L+ I D L L L NL L L+ Q+ S
Sbjct: 342 NLILNKNQISD--LIPLQSLTNLTSLALNKNQISD--LTPLQSLTNLTSLALNKNQI--S 395
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGL 350
L L LTNL S+ L+ ISD L L L++L SL L QI+D T L +LT+LT L
Sbjct: 396 DLTPLQSLTNLTSLTLNKNQISD--LTPLQSLTNLTSLCLVKNQISDLTPLQSLTNLTNL 453
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T+ + +ITD L++ L +L + ++D + L++LT L L ++ T
Sbjct: 454 TYTNSHSTQITDFTP--LQSLTKLTNLTLNKNEISD--FTPLISLTNLTFLYLRRSWWST 509
Query: 411 DKTLELISGLT-GLVSLNVSNSRI 433
+ + ++ L L SL +S RI
Sbjct: 510 IERINQLNSLPNNLRSLALSTQRI 533
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 187/450 (41%), Gaps = 106/450 (23%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I D L+ ++ L+NLTSL+ N + + F N + L L+
Sbjct: 108 EIDDDNLDRIKSLTNLTSLNLSTPNVLIYG--RTFHYTHNHI-----------TDLKPLR 154
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------------ 194
L KLE L + N I D+ PL LTNL+ L + S + D
Sbjct: 155 SLAKLEKLELS-ANPI--KDISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVY 211
Query: 195 ------------------------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ I++L+ L KLT L+L V LSAL SL
Sbjct: 212 DAKNLIPLKYLTNLTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSL 271
Query: 231 FYLNLNRCQLSDDGCEKFS---RLTNLESLNLDSCGIGDEGLV----NLTGLC------- 276
NL L+ G S LTNL L L I + L+ LT LC
Sbjct: 272 --TNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEIN 329
Query: 277 ---------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L L L+ Q+ S L L LTNL S+ L+ ISD L L L++L
Sbjct: 330 DFSSLGALTKLTNLILNKNQI--SDLIPLQSLTNLTSLALNKNQISD--LTPLQSLTNLT 385
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD- 386
SL L+ QI+D L L SLT LT L L +I+D L++ NL SL + ++D
Sbjct: 386 SLALNKNQISD--LTPLQSLTNLTSLTLNKNQISDLTP--LQSLTNLTSLCLVKNQISDL 441
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
++ + +L++LT N S + +TD T + LT L +L ++ + I+ PL +
Sbjct: 442 TPLQSLTNLTNLTYTN-SHSTQITDFT--PLQSLTKLTNLTLNKNEISD-----FTPLIS 493
Query: 447 LRSLTL----ESCKVTANDIKRLQSRDLPN 472
L +LT S T I +L S LPN
Sbjct: 494 LTNLTFLYLRRSWWSTIERINQLNS--LPN 521
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 130/288 (45%), Gaps = 52/288 (18%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L L+ +NL L N I L+ L L+ LT F NN I+ G AF L
Sbjct: 263 SDLSALQSLTNLTHLTLNGYGTIDLSVLQSLTNLTQLTLKGFSINN-ISLLG--AFPKLT 319
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+L ++ E +L L KL +L + N SD+ PL LTNL SL ++ ++
Sbjct: 320 SLCLIENEI-----NDFSSLGALTKLTNLIL---NKNQISDLIPLQSLTNLTSLALNKNQ 371
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
++D L L +L +L L LN+ Q+SD L
Sbjct: 372 ISD--------------------------LTPLQSLTNLTSLALNKNQISD--LTPLQSL 403
Query: 252 TNLESLNLDSCGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
TNL SL L+ I D + L NLT LC +K ++SD + L+ L+ LTNL N
Sbjct: 404 TNLTSLTLNKNQISDLTPLQSLTNLTSLCLVKN-QISDL----TPLQSLTNLTNLTYTNS 458
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
T I+D + L L+ L +L L+ +I+D L SLT LT L L
Sbjct: 459 HSTQITDFT--PLQSLTKLTNLTLNKNEISD--FTPLISLTNLTFLYL 502
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEG------------LVNLTGLCNLKCLELSD 285
C++ DD ++ LTNL SLNL + + G L L L L+ LELS
Sbjct: 107 CEIDDDNLDRIKSLTNLTSLNLSTPNVLIYGRTFHYTHNHITDLKPLRSLAKLEKLELSA 166
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITD------ 338
+ + L LTNL +NL + I D L+ L L+SL DA+ +
Sbjct: 167 NPIK--DISPLQSLTNLRELNLKHSPIEDLTPLKSLINLTSLSVRVYDAKNLIPLKYLTN 224
Query: 339 -----------TGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEICGGGL 384
++ L SLT LTHL L ++ + A + L++ NL L + G G
Sbjct: 225 LTQLSVRASQLNNISFLQSLTKLTHLSLRSIKVQVNRASDLSALQSLTNLTHLTLNGYGT 284
Query: 385 TDAGV-KHIKDLSSLTLLNLSQN--------------CNLTDKTLELIS--GLTGLVSLN 427
D V + + +L+ LTL S N C + ++ + S LT L +L
Sbjct: 285 IDLSVLQSLTNLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLTNLI 344
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
++ ++I + L L+ L NL SL L +++ D+ LQS L NL S
Sbjct: 345 LNKNQI--SDLIPLQSLTNLTSLALNKNQIS--DLTPLQS--LTNLTSL 387
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 152/362 (41%), Gaps = 75/362 (20%)
Query: 172 DMKPLSGLTNLKSLQISCS-----------------------KVTDSGIAYLKGLQKLTL 208
D + L L NL+ L S S ++ D + +K L LT
Sbjct: 66 DFRLLQCLPNLQQLNGSGSWSGNDLSVLQSLTKLTTLSLLDCEIDDDNLDRIKSLTNLTS 125
Query: 209 LNLEGCPV---------TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR---LTNLES 256
LNL V T + L L SL L + +LS + + S LTNL
Sbjct: 126 LNLSTPNVLIYGRTFHYTHNHITDLKPLRSL--AKLEKLELSANPIKDISPLQSLTNLRE 183
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-- 314
LNL I D L L L NL LS + L L LTNL +++ + +++
Sbjct: 184 LNLKHSPIED--LTPLKSLINLTS--LSVRVYDAKNLIPLKYLTNLTQLSVRASQLNNIS 239
Query: 315 --GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
SL KL L SL+S+ + + +D L+AL SLT LTHL L G D + L++
Sbjct: 240 FLQSLTKLTHL-SLRSIKVQVNRASD--LSALQSLTNLTHLTLNGYGTID--LSVLQSLT 294
Query: 373 NLRSLEICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTL 414
NL L + G + + + I D SSL L NL N N +
Sbjct: 295 NLTQLTLKGFSINNISLLGAFPKLTSLCLIENEINDFSSLGALTKLTNLILNKNQISDLI 354
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
L S LT L SL ++ ++I + L L+ L NL SL L +++ D+ LQS L NL
Sbjct: 355 PLQS-LTNLTSLALNKNQI--SDLTPLQSLTNLTSLALNKNQIS--DLTPLQS--LTNLT 407
Query: 475 SF 476
S
Sbjct: 408 SL 409
>gi|320169763|gb|EFW46662.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 684
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 139/311 (44%), Gaps = 10/311 (3%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N T SGLT L SL +S + +T + GL LT L+L G P+T ++ +
Sbjct: 43 NLFTSVAANAFSGLTALNSLFLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDNTFT 102
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L +L L++ Q++ F+ L LE L+L+ I + TGL L L L +
Sbjct: 103 GLTALTRLDVYVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFN 162
Query: 286 ---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
T + +S LS LT L+ L+ ++ S GL+ L L+L + +IT A
Sbjct: 163 NNITSIPASAFADLSALTYLD---LAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPA 219
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
A T LT LT L L I A +L L + +T L SLT L+
Sbjct: 220 AFTGLTALTELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELD 279
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT---A 459
L N +T +GLT L L+V N++ITS L +L +L LES ++T A
Sbjct: 280 LDLNL-MTSIDASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISA 338
Query: 460 NDIKRLQSRDL 470
N L S +
Sbjct: 339 NAFAGLTSLNF 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 153/359 (42%), Gaps = 7/359 (1%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
GL+ L SL F NN IT+ + AF+GL L +L L T I GL L
Sbjct: 53 FSGLTALNSL-FLSNNPITSIAVNAFSGLTALTQLSLAGNPLTTIPDN--TFTGLTALTR 109
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ + I +GL L+ L ++ +++T+ GL LT L+L +T+
Sbjct: 110 LDV-YVTQIASISASAFAGLPVLEVLSLNDNQITNIASNTFTGLTALTRLSLFNNNITSI 168
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+ + L +L YL+L Q++ F LT L L+L S I TGL L
Sbjct: 169 PASAFADLSALTYLDLAGNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALT 228
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + + S +GLT+L + + I+ S AGL SL L+LD +T
Sbjct: 229 ELVLENNLIASISANDFAGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSI 288
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+A LT L L + +IT A +L +L + +T L+SL
Sbjct: 289 DASAFAGLTSLNLLSVQNNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLN 348
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L N +T + + +T L L++ ++ITS L + L L S T
Sbjct: 349 FLRLEGN-QITSISANAFAAVTSLSVLSLHFNQITSFSANAFTGLTTMMYLLLNSNPFT 406
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 161/371 (43%), Gaps = 3/371 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I+ + GL+ LT LS N +T F GL L +LD+
Sbjct: 68 PITSIAVNAFSGLTALTQLSLA-GNPLTTIPDNTFTGLTALTRLDVYVTQIASISASAFA 126
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL LE L++ N IT+ +GLT L L + + +T + L LT L+L
Sbjct: 127 GLPVLEVLSLN-DNQITNIASNTFTGLTALTRLSLFNNNITSIPASAFADLSALTYLDLA 185
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
G +T+ ++ L L YL+L +++ F+ LT L L L++ I +
Sbjct: 186 GNQMTSLSANAFIGLTELTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDF 245
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
GL +L L + + Q+ S +GL +L ++L ++ AGL+SL L++
Sbjct: 246 AGLTSLNLLRMRNNQITSLSANGFAGLPSLTELDLDLNLMTSIDASAFAGLTSLNLLSVQ 305
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
QIT L LT L L +IT A +L L + G +T
Sbjct: 306 NNQITSISANGFAGLPSLTALGLESNQITSISANAFAGLTSLNFLRLEGNQITSISANAF 365
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++SL++L+L N +T + +GLT ++ L ++++ T+ + L+N L+L
Sbjct: 366 AAVTSLSVLSLHFN-QITSFSANAFTGLTTMMYLLLNSNPFTTLPPGLFQGLQNGLILSL 424
Query: 453 ESCKVTANDIK 463
E ++ N+
Sbjct: 425 EDSSLSPNNFT 435
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 113/265 (42%), Gaps = 35/265 (13%)
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+G PVT L +LNL + FS LT L SL L + I +
Sbjct: 29 DGIPVTTTDLR--------LHLNL----FTSVAANAFSGLTALNSLFLSNNPITSIAVNA 76
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+GL L L L+ + + +GLT L +++ T I+ S AGL L+ L+L
Sbjct: 77 FSGLTALTQLSLAGNPLTTIPDNTFTGLTALTRLDVYVTQIASISASAFAGLPVLEVLSL 136
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ QIT+ T LT LT L LF IT A+ + L L++ G +T
Sbjct: 137 NDNQITNIASNTFTGLTALTRLSLFNNNITSIPASAFADLSALTYLDLAGNQMTSLSANA 196
Query: 392 IKDLSSLTLLNLSQN-------------CNLTDKTLE--LISGLT-----GLVSLN---V 428
L+ LT L+L+ N LT+ LE LI+ ++ GL SLN +
Sbjct: 197 FIGLTELTYLSLTSNEITSISPAAFTGLTALTELVLENNLIASISANDFAGLTSLNLLRM 256
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLE 453
N++ITS L +L L L+
Sbjct: 257 RNNQITSLSANGFAGLPSLTELDLD 281
>gi|242083750|ref|XP_002442300.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
gi|241942993|gb|EES16138.1| hypothetical protein SORBIDRAFT_08g017670 [Sorghum bicolor]
Length = 489
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 201/425 (47%), Gaps = 71/425 (16%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL+ I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLAKKCPELRSLN------------------ISYLKVG- 50
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSG 196
+G L ++ L +LE L + C+CI D ++ LS G +L+S+ +S C VT G
Sbjct: 51 ------NGSLRSISSLERLEELAMVCCSCIDDEGLELLSKGSDSLQSVDVSRCDHVTSEG 104
Query: 197 IA------------------------YLKGL----QKLTLLNLEGCPVTAACLDSL-SAL 227
+A +L L + LT+L L+G V+ + L ++ +
Sbjct: 105 LASLIDGRNFVQKLYAADCLHEIGQRFLSKLATLKETLTMLKLDGLEVSDSLLQAIGESC 164
Query: 228 GSLFYLNLNRCQ-LSDDGCEKF-SRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLEL 283
L + L++C ++DDG ++ ++L +++L C I + L ++ C L+CL L
Sbjct: 165 NKLVEIGLSKCSGVTDDGISSLVAQCSDLRTIDLTCCNLITNNALDSIADNCKMLECLRL 224
Query: 284 -SDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTG 340
S + + GL+ ++ NL+ I+L+ G+ D +L LA S L+ L L I+D G
Sbjct: 225 ESCSLINEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKG 284
Query: 341 LAALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEIC-GGGLTDAGVKHIKDLS 396
+A ++S G L LDL+ ITD G A L N K ++ L +C +TD G+ H+ L
Sbjct: 285 IAFISSNCGKLVELDLYRCNSITDDGLAALVNGCKRIKLLNLCYCNKITDTGLGHLGSLE 344
Query: 397 SLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLE 453
LT L L +T + ++ G L+ L++ + AGL L NLR LT+
Sbjct: 345 ELTNLELRCLVRITGIGISSVAIGCKSLIELDLKRCYSVDDAGLWALARYALNLRQLTIS 404
Query: 454 SCKVT 458
C+VT
Sbjct: 405 YCQVT 409
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 128/290 (44%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+N+K + IA+ +L +DL+ V D+ L HL CS L+ L C ISD G+ +
Sbjct: 230 INEKGLKRIATCCPNLKEIDLTDCGVDDAALEHLAKCSELRILKLGLCSSISDKGIAFIS 289
Query: 104 G-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A LVN G +++ LN+
Sbjct: 290 SNCGKLVELDLYRCNSITDDGLAA---------------------LVN--GCKRIKLLNL 326
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITD+ + L L L +L++ C ++T GI+ V C
Sbjct: 327 CYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 369
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
SL L+L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 370 ------KSLIELDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 421
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ + G L+KL L LK++
Sbjct: 422 CLQ--DIK-----MVHLSWVS-IEGFEMALRA-ACGRLKKLKMLCGLKTV 462
>gi|168700135|ref|ZP_02732412.1| hypothetical protein GobsU_11445 [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
++ + L L L+L + D G+ L+GL L LEL+ TQV +G++ LSGLT L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L FT ++D ++ L+GL L LNL +TD G+ AL L GLT LDL R+TD+G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L +L GLT LDLF ++TD G L K L LE+ +TDAGVK + L++LT L+L
Sbjct: 4 LAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLDL 63
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+TD ++ +SGL L+ LN+ + +T AG++ L LK L L L +VT
Sbjct: 64 G-FTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVT 117
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L L L+L DT+V G++ LSGL L + L+FT ++D ++ L+GL++L +L+
Sbjct: 3 ELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTTLD 62
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L ++TD G+ AL+ L L L+L +TD+G L K L L++ +TDAG
Sbjct: 63 LGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%)
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ L+ L L ++L T ++D +++L+GL L L L Q+TD G+ AL+ LT LT
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
LDL ++TD+G L K+L L + +TDAGVK + L LT+L+LS
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLS 112
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+++LA L L L+L ++TD G+ L+ L GLT L+L ++TD+G L L +
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L++ +TDAGVK + L L LNL +TD ++ ++GL GL L++S +R+T A
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTV-VTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 437 G 437
G
Sbjct: 120 G 120
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
+ L+AL L L+L +++D G ++ S L L L L + D G+ L+GL L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L+L T+V +G++ LSGL +L +NL T ++D ++ LAGL L L+L ++TD G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 66/120 (55%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
MK L+ L L L + +KVTD G+ L GL+ LT L L VT A + +LS L +L
Sbjct: 1 MKELAALKGLTQLDLFDTKVTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALTT 60
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+L +++D G + S L +L LNL + D G+ L GL L L+LS T+V +G
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDAG 120
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L LKGL +L+ + K +TD +K LSGL L L+++ ++VTD+G+ L GL LT
Sbjct: 4 LAALKGLTQLDLFDTK----VTDVGVKELSGLKGLTRLELTFTQVTDAGVKALSGLTALT 59
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
L+L VT A + +LS L L LNL ++D G + + L L L+L + D
Sbjct: 60 TLDLGFTKVTDAGVKALSGLKHLIQLNLGVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 268 G 268
G
Sbjct: 120 G 120
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
L L LD F +++D G++ L GL LT L +T G+KA +GL L
Sbjct: 3 ELAALKGLTQLDL-FDTKVTDVGVKELSGLKGLTRLELTFTQ-VTDAGVKALSGLTALTT 60
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
LDL G+ L GL L LN+ +TD+ +K L+GL L L +S ++VTD+
Sbjct: 61 LDLGFTKVTDAGVKALSGLKHLIQLNL-GVTVVTDAGVKALAGLKGLTILDLSFTRVTDA 119
Query: 196 G 196
G
Sbjct: 120 G 120
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTD+G+ L + L +LD F +++D G++ L GL +L L+
Sbjct: 34 LTRLELTFTQVTDAGVKALSGLTALTTLDLGFT-KVTDAGVKALSGLKHLIQLNLGV-TV 91
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI 144
+T G+KA AGL L LDL TR+
Sbjct: 92 VTDAGVKALAGLKGLTILDLS-FTRV 116
>gi|417302467|ref|ZP_12089567.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
gi|327541207|gb|EGF27751.1| conserved hypothetical protein, secreted [Rhodopirellula baltica
WH47]
Length = 341
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L + + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRV-YGKAFDDAKAKSISGLPALVAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L ++L PVT L S+S L L LNL +++ + E S+L
Sbjct: 167 LQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L+ LEL++T G G+ ++ + LE INL T I + SL+ G +S
Sbjct: 214 ------------LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L LN+D IT+ + + SL L L L ++ L+ + L +L + GL
Sbjct: 262 LTVLNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEEPAKELE 330
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 115/257 (44%), Gaps = 5/257 (1%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
L + S + LF + SD + + L NL+ L + D +++GL L
Sbjct: 89 LSNTSTVSELF---MPAAAWSDGTVLRLAALPNLKRLRVYGKAFDDAKAKSISGLPALVA 145
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
+ DT V G L+ L L+ ++L + ++D +L ++ L L LNL +IT
Sbjct: 146 VTFQDTSVTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLRGTKITGEA 205
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ L L L+L G + N + L + + + + +K + +SLT+
Sbjct: 206 FEPISKLP-LESLELAETDFGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTV 264
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
LN+ +T++ + +I L L L++ + ++ L LKPL+ L +L + + +
Sbjct: 265 LNVDNCPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEE 324
Query: 461 DIKRLQSRDLPNLVSFR 477
K L++ PNL F
Sbjct: 325 PAKELEAM-FPNLKRFE 340
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ V L S VTD L + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDVSLMNSPVTDKTLASISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L SL + +GM A A + L K++L + L +G L LN+
Sbjct: 212 LP-LESLELAETD-FGPEGMPAIANIEGLEKINLWLTKIDNESLKAFEGKTSLTVLNVDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V+ + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIISLPHLKLLHLGKTSVSPDALPQLKPLQELETLFVTNLGLEEEPAKEL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|290989752|ref|XP_002677501.1| predicted protein [Naegleria gruberi]
gi|284091109|gb|EFC44757.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 13/288 (4%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
++G+K L+NL +L + G ++ G+ +L L++ N IT K +S L
Sbjct: 45 SKGIKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVS-SNDITTKGAKHISKLN 103
Query: 181 NLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L SL++ + + GI Y+ L +LT L++ + ++S L L L++
Sbjct: 104 KLVSLKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNN 163
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
L ++G SRL NL L ++S I EG ++ L L L +S + G + +S L
Sbjct: 164 LLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISEL 223
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
NL +++S ++D + ++ L LK+L +D QI+D G+ ++ L LT L++
Sbjct: 224 NNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYNL 283
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I+ G + I G + D G + I DL++L L + QN
Sbjct: 284 ISAEGLS-----------SISGNEIGDEGAEIIGDLTNLKELTVDQNS 320
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 13/282 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L L NL L I+ +++ D+G + G+++LT L++ +T +S L L
Sbjct: 48 IKYLGNLMNLSELYINSNEIGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVS 107
Query: 233 LNLNRCQLSDDGCEKFS-RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
L + + G + + +L L L++ S +G G ++ L L L + + + +
Sbjct: 108 LKMEENMIDAQGIKYITDQLNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNE 167
Query: 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
G ++S L NL + ++ I + + L L +L + + D G ++ L LT
Sbjct: 168 GAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLDEGAKLISELNNLT 227
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
LD+ +TD G + K L++LEI ++D G++ I L+ LT LN+ N
Sbjct: 228 VLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQLTELNIDYN----- 282
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
LIS GL S +S + I G + L NL+ LT++
Sbjct: 283 ----LISA-EGLSS--ISGNEIGDEGAEIIGDLTNLKELTVD 317
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 33/291 (11%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
G+ +L + NL L N +I D G E + G+ LT L N+ IT +G K + L
Sbjct: 47 GIKYLGNLMNLSELYINSN-EIGDNGAEDISGMKQLTKLDVSSND-ITTKGAKHISKLNK 104
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM----------KPLSGLTNL 182
LV L +E +++ +G+ + N +T+ D+ K +S L+ L
Sbjct: 105 LVSLKMEE------NMIDAQGIKYI----TDQLNQLTELDIGSNDLGVLGAKAVSELSQL 154
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
SL I + + + G AY+ L LT L + + + + L L L ++ L D
Sbjct: 155 TSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGAKDIIKLKQLTTLFISGNSLLD 214
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+G + S L NL L++ + DEG+ ++ L LK LE+ + Q+ G+ + GL L
Sbjct: 215 EGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDENQISDEGIESICGLNQL 274
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+N+ + IS L ++G +I D G + LT L L
Sbjct: 275 TELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIGDLTNLKEL 314
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 32/256 (12%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGD-----EGLVNLTGLCNLKCLELSDTQVGSSGLR 294
D +K L+ L++L++ + GD +G+ L L NL L ++ ++G +G
Sbjct: 15 FKDSFLKKIGELSQLKTLDIANAA-GDRSRFSKGIKYLGNLMNLSELYINSNEIGDNGAE 73
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHL 353
+SG+ L +++S I+ + ++ L+ L SL ++ I G+ +T L LT L
Sbjct: 74 DISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQLNQLTEL 133
Query: 354 DL-------FGAR-----------------ITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
D+ GA+ + + GAAY+ NL L I + G
Sbjct: 134 DIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSNQIDSEGA 193
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
K I L LT L +S N L D+ +LIS L L L++S++ +T G+ + LK L++
Sbjct: 194 KDIIKLKQLTTLFISGNS-LLDEGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKT 252
Query: 450 LTLESCKVTANDIKRL 465
L ++ +++ I+ +
Sbjct: 253 LEIDENQISDEGIESI 268
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNN 117
L +D+S +D+T G H+ + L SL + I G++++ L+ LT L N+
Sbjct: 81 LTKLDVSSNDITTKGAKHISKLNKLVSLKMEENM-IDAQGIKYITDQLNQLTELDIGSND 139
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ G KA + L L L +E ++ G + L+ L L I N I K +
Sbjct: 140 -LGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCIN-SNQIDSEGAKDII 197
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L +L IS + + D G + L LT+L++ +T ++ +S L L L ++
Sbjct: 198 KLKQLTTLFISGNSLLDEGAKLISELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDE 257
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
Q+SD+G E L L LN+D I EGL +++G ++G G +
Sbjct: 258 NQISDEGIESICGLNQLTELNIDYNLISAEGLSSISG-----------NEIGDEGAEIIG 306
Query: 298 GLTNLESI 305
LTNL+ +
Sbjct: 307 DLTNLKEL 314
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 34/194 (17%)
Query: 307 LSFTGIS---DGSLRKLAGLSSLKSLNL----DARQITDTGLAALTSLTGLTHLDLFGAR 359
L G+S D L+K+ LS LK+L++ R G+ L +L L+ L +
Sbjct: 7 LDMKGVSIFKDSFLKKIGELSQLKTLDIANAAGDRSRFSKGIKYLGNLMNLSELYINSNE 66
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-------NLTDK 412
I D+GA + K L L++ +T G KHI L+ L L + +N +TD+
Sbjct: 67 IGDNGAEDISGMKQLTKLDVSSNDITTKGAKHISKLNKLVSLKMEENMIDAQGIKYITDQ 126
Query: 413 TLEL-----------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+L +S L+ L SL++ N+ + + G ++ L NL L + S
Sbjct: 127 LNQLTELDIGSNDLGVLGAKAVSELSQLTSLSIENNNLLNEGAAYISRLLNLTDLCINSN 186
Query: 456 KVT---ANDIKRLQ 466
++ A DI +L+
Sbjct: 187 QIDSEGAKDIIKLK 200
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +D+S +++TD G+ + L++L+ + QISD G+E + GL+ LT L+
Sbjct: 221 SELNNLTVLDISDNELTDEGVEPISKLKQLKTLEIDEN-QISDEGIESICGLNQLTELNI 279
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
N I+A+G+ + +G N + + I G L NLK L
Sbjct: 280 DY-NLISAEGLSSISG--NEIG---DEGAEIIGDLTNLKEL 314
>gi|84043372|ref|XP_951476.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348176|gb|AAQ15503.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359981|gb|AAX80405.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1393
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/421 (28%), Positives = 181/421 (42%), Gaps = 67/421 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC +L+ L+ ++CIQ++D + LSN T++
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTD-----INPLSNATAIE------------ 345
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL ++K
Sbjct: 346 ----------ELNLNGCRRITRGIDVVWALPKLRVFHMKDVHLSEPSLDSVGTGGSLVKV 395
Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 396 SLDNCAGFGDMSLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEVHISSLDFT 455
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ A SL LN+ LS+ E + + LE L+L C D G+ L L LK L
Sbjct: 456 GIGASKSLLQLNMESITGLSN--VEALANILTLEKLSLHGCTDIDAGIGCLGNLPQLKVL 513
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+LS T + LR L + S+NLS T +S ++ L +L LNL
Sbjct: 514 DLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTNVS-----HISSLEALNELNLSNCIRI 568
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDL 395
+ G AL L L L ITD G +Y KNL +L++ C L V + ++
Sbjct: 569 NAGWEALEKLQQLHVAILSNTHITDRGISYFSKCKNLVTLDLSFCNKLL---DVTTLSNI 625
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++L LNL +C+ K L ++ L L LN+ ++ + + L K+L L+LE+C
Sbjct: 626 TTLEELNL-DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENC 684
Query: 456 K 456
K
Sbjct: 685 K 685
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 141/525 (26%), Positives = 211/525 (40%), Gaps = 118/525 (22%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD G+ + C NL +LD +FC
Sbjct: 556 ALNELNLSNCIRINAGWEALEKLQ--QLHVAILSNTHITDRGISYFSKCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 614 NKLLD-----VTTLSNITTLE----------------------ELNLDSCSNIRKGLSVL 646
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LNIK NC D+ PLS L L+ L +
Sbjct: 647 GELPRLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGDVTPLSNLVTLEELNLHY 706
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
C KVT SG+ L L +L +L+L V L+++ ++ L LN + C+
Sbjct: 707 CDKVT-SGMGTLGRLPQLRVLDLGRTQVDDNSLENICTSSIPLVSLNFSHCK-KITSISA 764
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT LE LN+D+C G L L+ LS+T++ +RH+S +L ++NL
Sbjct: 765 IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDEKIRHVSECKSLNTLNL 824
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLD--------------------------------AR 334
+F I+D + L+ ++ L+ LNLD A+
Sbjct: 825 AFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKARILSMKECYMGDGYAQ 882
Query: 335 QITDTG------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
Q + G + AL+ + L L L AR + +F L
Sbjct: 883 QCSILGNSKSLVKLNLERSRGRISVKALSDIATLEELVLDHAR----EVCCIPSFSCLPR 938
Query: 377 LEICGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L + TD K+I + SL LNLS +TD + ++S L+ L LNV+
Sbjct: 939 LRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNVNCCNA 996
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFR 477
G L L LR L +TA DI L S + L L FR
Sbjct: 997 IRKGWESLGKLPLLRVAILSDTNITAKDIACLSSCKKLVKLKFFR 1041
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 164/381 (43%), Gaps = 57/381 (14%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
H+ L L+ + CI+I + G E L L L ++ N IT +G+ F+ NLV
Sbjct: 550 HISSLEALNELNLSNCIRI-NAGWEALEKLQQL-HVAILSNTHITDRGISYFSKCKNLVT 607
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 194
LDL C ++ D+ LS +T L+ L + SCS +
Sbjct: 608 LDLSFCNKLL--------------------------DVTTLSNITTLEELNLDSCSNIR- 640
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
G++ L L +L +LN++G + + + SL SL L+L C+ D S L L
Sbjct: 641 KGLSVLGELPRLCVLNIKGVQLEDSVIGSLGNGKSLVRLSLENCKGFGD-VTPLSNLVTL 699
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
E LNL C G+ L L L+ L+L TQV + L ++ +++ ++L+F+
Sbjct: 700 EELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDDNSLENICT-SSIPLVSLNFS---- 754
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
++IT ++A+ SLT L L++ SG L
Sbjct: 755 -----------------HCKKIT--SISAIASLTALEELNIDNCCNVTSGWNVFGTLHQL 795
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
R + + D ++H+ + SL LNL+ ++TD T +S +T L LN+
Sbjct: 796 RVATLSNTRINDEKIRHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNI 853
Query: 435 SAGLRHLKPLKNLRSLTLESC 455
G+ L L R L+++ C
Sbjct: 854 RKGIETLGTLPKARILSMKEC 874
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 131/459 (28%), Positives = 208/459 (45%), Gaps = 52/459 (11%)
Query: 20 LTEVSLEAFRD-CALQDL-CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VT 70
L E+ L+ R+ C + CL + +N K+ D+ S+ SL S++LS VT
Sbjct: 916 LEELVLDHAREVCCIPSFSCLPRLRVLNLKYTDINGDATKNISESKSLRSLNLSHCKWVT 975
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D + L S L+ L+ N C I G E L L L ++ + ITA+ + +
Sbjct: 976 DISV--LSSLSTLEELNVNCCNAIRKG-WESLGKLP-LLRVAILSDTNITAKDIACLSSC 1031
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
LVKL RC ++ V K + LE L +K C+ GL L +L
Sbjct: 1032 KKLVKLKFFRCKKLSDVTVVYK-IQSLEELIVKNCS----------GGLKGLNAL----- 1075
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFS 249
L L+ L L N+ G ++ ++S+ SL LN+ R +L+D S
Sbjct: 1076 -------GTLPRLRFLHLRNVSGSDIS---VESIGTSKSLVRLNIETREELTDT--TPLS 1123
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+T+LE L+L CG EG+ L L L+ L L +++ S L ++ ++ S+NL+
Sbjct: 1124 NITSLEELSLRKCGNNLEGVGTLGKLPRLRSLYLGLSRINDSTLYYICLSRSITSLNLAS 1183
Query: 310 TG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 367
+ ++D + ++ L++L+ LNL +G AL+ L L L+L R+T G Y
Sbjct: 1184 SWKLTD--ISHISKLTALEELNLRGCYPITSGWEALSELPRLRVLNLESTRVTTRYGGYY 1241
Query: 368 LRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
+R K+L +L + +TDA + +IK L L + C + L L L
Sbjct: 1242 IRRCKSLVTLSLESCDMTDASCLANIKTLEELHI----GRCKELRWGFSPLFTLPRLRIL 1297
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N+ S IT LR ++P + L L C+ NDI L
Sbjct: 1298 NLICSLITDEDLREIQPPHTIEELNLSYCE-ELNDITPL 1335
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 174/410 (42%), Gaps = 57/410 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL + L L+ +T ++ + L NL+ L+L + + KL L
Sbjct: 196 HLFSVGTLEELAITDTMQLT--NIRGISRLTNLMCLELNSTDIDDTCIGEISACAKLSKL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ CN ITD+ P+S L L+ L + SC +T GI L L +L +L+L G PV
Sbjct: 254 SVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRMLDLSGVPVEDN 310
Query: 220 CLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
CL L GSL LN++ C QL+D S T +E LNL+ C G+ + L L
Sbjct: 311 CLKDLCDCGSLERLNISYCIQLTD--INPLSNATAIEELNLNGCRRITRGIDVVWALPKL 368
Query: 279 KCLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLSFTGISDG 315
+ + D VG+ G + LS + LE +N+
Sbjct: 369 RVFHMKDVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMSLLSSIVTLEELNIQKCADIIS 428
Query: 316 SLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD---------- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 429 GVGCLGTLPYLRVLNIKEVHISSLDFTGIGASKSLLQLNMESITGLSNVEALANILTLEK 488
Query: 355 --LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L G D+G L N L+ L++ G + ++ + ++ LNLS +T+
Sbjct: 489 LSLHGCTDIDAGIGCLGNLPQLKVLDLSGTNTDNESLRSLCLSQTMVSLNLSHCWKMTN- 547
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
+ IS L L LN+SN +AG L+ L+ L L + +T I
Sbjct: 548 -VSHISSLEALNELNLSNCIRINAGWEALEKLQQLHVAILSNTHITDRGI 596
>gi|343416403|emb|CCD20380.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 1256
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 139/494 (28%), Positives = 222/494 (44%), Gaps = 66/494 (13%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL + V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 372 TLQELCLAEV-SVDDAFLRDLTCHERLRELSLN-SCTRITDVSPLARMR---SLEMLDLN 426
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRR----------------------NNAITAQGMKAF 127
C I G L L GL+ L L R+ N+ +
Sbjct: 427 GCTGIVRG-LHELCGLTTLQELYLRQMSVDDALLRDLTCHERLRELSLNSCTRITDVSPL 485
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL CT I GL L GL L+ L ++ + + D+ ++ L+ L+ L +
Sbjct: 486 ARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMS-VDDALLRDLTCHERLRELSL 544
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +LNL C L L L +L L L + D
Sbjct: 545 NSCTRITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQKLCLANVNVDDAFLR 602
Query: 247 KFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ L L+L+SC I D + L + +L+ L+L+D GL L GLT L+ +
Sbjct: 603 DLTCHERLRELSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQEL 660
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDT----------------------GLA 342
L + D LR L L+ L+L++ +ITD GL
Sbjct: 661 CLRQLSVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEILDLNGCTGIVRGLH 720
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLL 401
L LT L L L + D+ L + LR L + +TD V + + SL +L
Sbjct: 721 VLCGLTTLQELCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITD--VSPLARMRSLEML 778
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-A 459
NL+ +C + L + GLT L L + + A LR L + LR L+L SC ++T
Sbjct: 779 NLN-DCTGIVRGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDV 837
Query: 460 NDIKRLQSRDLPNL 473
+ + R++S ++ NL
Sbjct: 838 SPLARMRSLEMLNL 851
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 223/493 (45%), Gaps = 64/493 (12%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL Q V+D ++ D+ + LS++ S + +TD S L ++ +L+ LD N
Sbjct: 656 TLQELCLRQL-SVDDAFLRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEILDLN 710
Query: 90 FCIQISDGGLEHLRGLSNLTSL---------SFRR-------------NNAITAQGMKAF 127
C I G L L GL+ L L +F R N+ +
Sbjct: 711 GCTGIVRG-LHVLCGLTTLQELCLANVNVDDAFVRDLTCHERLRRLSLNSCTRITDVSPL 769
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L L+L CT I GL L GL L+ L + + D+ ++ L+ L+ L +
Sbjct: 770 ARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPKVY-VDDAFLRDLTCHERLRRLSL 828
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +LNL GC L L L +L L L + + D
Sbjct: 829 NSCTRITD--VSPLARMRSLEMLNLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFLR 886
Query: 247 KFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ L L+L+SC I D + L + +L+ L+L+D GL L GLT L+ +
Sbjct: 887 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQEL 944
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSG 364
L+ + D LR L L+ L+L++ +ITD ++ L + L LDL G G
Sbjct: 945 CLANVNVDDAFLRDLTCHERLRELSLNSCTRITD--VSPLARMRSLEKLDLNGCTGIVRG 1002
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVK-----------------HIKDLSSLTLLNLSQNC 407
L L+ L + + DA ++ I D+S L + +N
Sbjct: 1003 LHVLCGLTTLQELYLRQMSVDDALLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLENM 1062
Query: 408 NLTDKT-----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-AN 460
+L T L ++ GLT L L + + A LR L + LR L+L SC ++T +
Sbjct: 1063 DLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITDVS 1122
Query: 461 DIKRLQSRDLPNL 473
+ R++S ++ +L
Sbjct: 1123 PLARMRSLEMLDL 1135
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 198/424 (46%), Gaps = 21/424 (4%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L + L V D+ L L L+ L N C +I+D + L+ + SL
Sbjct: 797 TTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITD-----VSPLARMRSLEMLNL 851
Query: 117 NAIT--AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N T +G+ GL L +L L + + L +L +L L++ C ITD +
Sbjct: 852 NGCTGIVRGLHELCGLTTLQELYLRQMSVDDAFLRDLTCHERLRRLSLNSCTRITD--VS 909
Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL+ + +L+ L ++ C+ + G+ L GL L L L V A L L+ L L
Sbjct: 910 PLARMRSLEMLDLNDCTGIV-RGLHELCGLTTLQELCLANVNVDDAFLRDLTCHERLREL 968
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+LN C D +R+ +LE L+L+ C GL L GL L+ L L V + L
Sbjct: 969 SLNSCTRITD-VSPLARMRSLEKLDLNGCTGIVRGLHVLCGLTTLQELYLRQMSVDDALL 1027
Query: 294 RHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
R L+ L ++L S T I+D S LA + SL++++L+ GL L LT L
Sbjct: 1028 RDLTCHERLRRLSLNSCTRITDVS--PLARMRSLENMDLNGCTGIVRGLHVLCGLTTLQE 1085
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L + D+ L + LR L + +TD V + + SL +L+L+ C
Sbjct: 1086 LYLRQMSVDDAFLRDLTCHERLRKLSLNSCTRITD--VSPLARMRSLEMLDLN-GCTGIV 1142
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRD 469
+ L ++ GLT L L + + A LR L + LR L+L SC ++T + + R++S +
Sbjct: 1143 RGLHVLCGLTTLQELYLRQMCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLE 1202
Query: 470 LPNL 473
+ +L
Sbjct: 1203 MLDL 1206
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 130/286 (45%), Gaps = 8/286 (2%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
K G+ L GL L L L V A L L+ L L+LN C D +
Sbjct: 357 QKCVIHGLHELCGLTTLQELCLAEVSVDDAFLRDLTCHERLRELSLNSCTRITD-VSPLA 415
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-S 308
R+ +LE L+L+ C GL L GL L+ L L V + LR L+ L ++L S
Sbjct: 416 RMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRDLTCHERLRELSLNS 475
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
T I+D S LA + SL+ L+L+ GL L LT L L L + D+ L
Sbjct: 476 CTRITDVS--PLARMRSLEMLDLNGCTGIVRGLHELCGLTTLQELYLRQMSVDDALLRDL 533
Query: 369 RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ LR L + +TD V + + SL +LNL+ +C + L ++ GLT L L
Sbjct: 534 TCHERLRELSLNSCTRITD--VSPLARMRSLEILNLN-DCTGIVRGLHVLCGLTTLQKLC 590
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
++N + A LR L + LR L+L SC + + R L NL
Sbjct: 591 LANVNVDDAFLRDLTCHERLRELSLNSCTRITDVSPLARMRSLENL 636
>gi|157865947|ref|XP_001681680.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68124978|emb|CAJ02759.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 610
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 7/360 (1%)
Query: 105 LSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LESLN 161
S L L+F N ++ ++ + +L L +E+C I G L MK L LN
Sbjct: 128 WSKLEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSFLN 187
Query: 162 IKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ + P S + +L++L + ++V+ S + L+ LNL+G V+ A
Sbjct: 188 LD--GAKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGAL 245
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S++ L L++ Q+S ++S + +L LNL I + + +L
Sbjct: 246 PPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAV 305
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L++ TQV + S +T+L S+++ T +S + + ++SL +LNL Q++ T
Sbjct: 306 LDVQGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGTL 365
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+S+T LT LD+ G +++ + + +L +L++ G ++ + LT
Sbjct: 366 PPQWSSMTSLTSLDVQGTQVSGTLPPQWSSMTSLAALDVQGTQVSGTLPPQWSSMRRLTH 425
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L L+ E S L LV+L +S+S+++ + +SL L+ C ++ +
Sbjct: 426 LLLTDTLLSGTLPAEW-SALQSLVTLQLSSSKVSGTLPPQWSGMSKAQSLQLQDCDLSGS 484
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 2/240 (0%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKC 280
DS S L L +L L ++S + +T+LESL+++ C I + + +L
Sbjct: 126 DSWSKLEKLTFLTLLGNKVSGTLPASWHSMTSLESLSIEKCESISGALPPQWSSMKSLSF 185
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L L +V S S + +L +++L T +S + + ++ L LNLD +++
Sbjct: 186 LNLDGAKVSGSLPPQWSSMKSLRTLDLGDTQVSGSLPPQWSSMTLLSFLNLDGAKVSGAL 245
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+S+T L LD+ G +++ + + K+L L + G ++ + ++SL +
Sbjct: 246 PPQWSSMTLLAVLDVQGTQVSGTLPPQWSSMKSLSVLNLRGTSISGSVPPQWSSMTSLAV 305
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 460
L++ Q ++ S +T L SL+V ++++ + + +L +L L +V+
Sbjct: 306 LDV-QGTQVSGTLPPQWSLMTSLTSLDVQGTQVSGSVPPQWSSMTSLTALNLRGTQVSGT 364
>gi|290971703|ref|XP_002668623.1| predicted protein [Naegleria gruberi]
gi|284082100|gb|EFC35879.1| predicted protein [Naegleria gruberi]
Length = 295
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S + L S+N+S GI D + ++ + L SL++ A QI D G L+ + LT L
Sbjct: 126 KFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSL 185
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D+ I D GA YL K L SL I G D G K+I ++ LT L++S + +
Sbjct: 186 DISANLIGDEGAKYLSEMKQLISLNI-GKNEIDEGAKYISEMKQLTSLDISY-TQVDVEG 243
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
++ IS + L SLN+ +RI G++ + +K L+SL +
Sbjct: 244 VKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S + L SLN+ GIGDE ++ + L L++S Q+G G ++LS + L S+++S
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS 188
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I D + L+ + L SLN+ +I D G ++ + LT LD+ ++ G ++
Sbjct: 189 ANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFI 247
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L SL ICG + GVK I ++ L L++S N
Sbjct: 248 SEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYN 285
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN++ + D+ + S + L SL++ + IGDEG L+ + L L++
Sbjct: 128 ISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDI 187
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S +G G ++LS + L S+N+ I +G+ + ++ + L SL++ Q+ G+
Sbjct: 188 SANLIGDEGAKYLSEMKQLISLNIGKNEIDEGA-KYISEMKQLTSLDISYTQVDVEGVKF 246
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
++ + LT L++ G RI G ++ K L+SL+I + G K I
Sbjct: 247 ISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 2/159 (1%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I D + K +S + L SL IS +++ D G YL +++LT L++
Sbjct: 131 MKQLISLNIS-GNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISA 189
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ LS + L LN+ + ++ D+G + S + L SL++ + EG+ ++
Sbjct: 190 NLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFIS 248
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
+ L L + ++G G++ +S + L+S+++S+ I
Sbjct: 249 EMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 88/170 (51%), Gaps = 1/170 (0%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
++ +++L LN+ G + +S + L L+++ Q+ D+G + S + L SL+
Sbjct: 127 FISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLD 186
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ + IGDEG L+ + L L + ++ G +++S + L S+++S+T + ++
Sbjct: 187 ISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVK 245
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
++ + L SLN+ +I G+ ++ + L LD+ RI GA ++
Sbjct: 246 FISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 92/179 (51%), Gaps = 3/179 (1%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+ + + + DS + K +S + L SL IS + + D ++ +++LT L++ +
Sbjct: 110 VNVTYSDWLLDSFEEAKFISEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDISANQIG 169
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
LS + L L+++ + D+G + S + L SLN+ I DEG ++ +
Sbjct: 170 DEGAKYLSEMKQLTSLDISANLIGDEGAKYLSEMKQLISLNIGKNEI-DEGAKYISEMKQ 228
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L++S TQV G++ +S + L S+N+ I ++ ++ + LKSL++ +I
Sbjct: 229 LTSLDISYTQVDVEGVKFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDISYNRI 287
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
G+ D+ I S+ L S+D+S + + D G +L + L SLD + + I D G ++L
Sbjct: 143 GIGDEEAKFI-SEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDISANL-IGDEGAKYL 200
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ L SL+ +N +G K + + L LD+ G+ + + +L SLNI
Sbjct: 201 SEMKQLISLNIGKNE--IDEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNI 258
Query: 163 KWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
C N I +K +S + LKSL IS +++ G ++
Sbjct: 259 --CGNRIGIEGVKFISEVKQLKSLDISYNRIGVEGAKFI 295
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L+S+++SG+ + D + + L SLD + QI D G ++L + LTSL
Sbjct: 129 SEMKQLISLNISGNGIGDEEAKFISEMKQLTSLDIS-ANQIGDEGAKYLSEMKQLTSLDI 187
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K + + L+ L++ + I G + + +L SL+I + + +
Sbjct: 188 SA-NLIGDEGAKYLSEMKQLISLNIGK-NEIDEGAKYISEMKQLTSLDISYTQVDVEG-V 244
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
K +S + L SL I +++ G+ ++ +++L L++
Sbjct: 245 KFISEMRQLTSLNICGNRIGIEGVKFISEVKQLKSLDI 282
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I + K + + L LD+ G L + +L SL+I N I D K L
Sbjct: 142 NGIGDEEAKFISEMKQLTSLDISANQIGDEGAKYLSEMKQLTSLDIS-ANLIGDEGAKYL 200
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
S + L SL I +++ D G Y+ +++LT L++ V + +S + L LN+
Sbjct: 201 SEMKQLISLNIGKNEI-DEGAKYISEMKQLTSLDISYTQVDVEGVKFISEMRQLTSLNIC 259
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
++ +G + S + L+SL++ IG EG
Sbjct: 260 GNRIGIEGVKFISEVKQLKSLDISYNRIGVEG 291
>gi|290979547|ref|XP_002672495.1| predicted protein [Naegleria gruberi]
gi|284086072|gb|EFC39751.1| predicted protein [Naegleria gruberi]
Length = 665
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT ++ ++ L + + I+ ++ D G + + +++LT L++ T + + ++
Sbjct: 398 ITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDI---SFTGISYNGMRSI 454
Query: 228 GSLFYLNLNRCQLSDDGCEKFS------------RLTNLESLNLDSCGIGDEGLVNLTGL 275
G L NL + S D E +S L L L++ IGDEG ++ L
Sbjct: 455 GQL--TNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISEL 512
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
NL LE+ + Q+ + G + +S L NL +N+S + S++ L L +L SL
Sbjct: 513 LNLTYLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLEAFNTG 572
Query: 336 IT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
IT D L A L LT LDL I + GA Y+ K L+SL++ L GVK++
Sbjct: 573 ITSNDVKLIA-NHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLV 631
Query: 394 DLSSLTLLNLSQN 406
L LT L++S+N
Sbjct: 632 RLDQLTDLDVSEN 644
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 114/235 (48%), Gaps = 9/235 (3%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+++ + + ++L + +++ + IGDEG + + L L++S T + +G+R +
Sbjct: 397 KITHEVLQNITKLEKVNYVDIAAIRIGDEGASMIGQMKQLTYLDISFTGISYNGMRSIGQ 456
Query: 299 LTNLESINLSFTGISDGSLRK-------LAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
LTNL + S + S K L L L L++ +I D G ++ L LT
Sbjct: 457 LTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDITYNEIGDEGSQFISELLNLT 516
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+L++ ++ + G + +NL L I +KH+ +L +LT L + N +T
Sbjct: 517 YLEMPNNQLRNEGFKMISKLENLTHLNISNNDFNCESMKHLCELKNLTSLE-AFNTGITS 575
Query: 412 KTLELISG-LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++LI+ L L L++S + I + G +++ LK L+SL L + + +K L
Sbjct: 576 NDVKLIANHLKYLTELDLSCNDIGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYL 630
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 48/314 (15%)
Query: 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
+ P+ I+ ++ + + V + A R + D+ +I Q L
Sbjct: 393 IYPKKITHEVLQNITKLEKVNYVDIAAIR--------------IGDEGASMIG-QMKQLT 437
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDF------NFCIQISDGGLEHLRGLSNLTSLSFR 114
+D+S + ++ +G+ + +NL L F N+ HLR L LT L
Sbjct: 438 YLDISFTGISYNGMRSIGQLTNLTQLIFSSDDYENYSAPKGVTVAIHLRNLKKLTHLDIT 497
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I +G + + L+NL L++ + G + L L LNI N MK
Sbjct: 498 YN-EIGDEGSQFISELLNLTYLEMPNNQLRNEGFKMISKLENLTHLNIS-NNDFNCESMK 555
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L L NL SL+ + +T + + + L+ LT L+L +C D
Sbjct: 556 HLCELKNLTSLEAFNTGITSNDVKLIANHLKYLTELDL-------SCND----------- 597
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ ++G + S L L+SL L + EG+ L L L L++S+ + +
Sbjct: 598 ------IGNEGAKYVSELKQLQSLQLAQTNLDSEGVKYLVRLDQLTDLDVSENSIDAERC 651
Query: 294 RHLSGLTNLESINL 307
++L+ + LE +++
Sbjct: 652 KYLNEMKQLEELSI 665
>gi|85679234|gb|ABC72033.1| InlA [Listeria monocytogenes]
Length = 794
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + N L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSNLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|290971663|ref|XP_002668605.1| predicted protein [Naegleria gruberi]
gi|284082078|gb|EFC35861.1| predicted protein [Naegleria gruberi]
Length = 968
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 2/205 (0%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
FS+L + E ++ IG EG +++ + L L++ + Q+G G + +S + L S+ +
Sbjct: 758 FSKLISEEKEEMEHS-IGVEGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTI 816
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
S I D ++ + + L S N+ + G ++ + LT LD+ I D GA
Sbjct: 817 SGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKS 876
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ K L SL I G + G K I ++ LTLL++ +N + D+ + IS L L SL
Sbjct: 877 ISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGEN-QIGDEGAKSISELKQLKSLT 935
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+S ++I G + + +K S L
Sbjct: 936 ISENQIGDEGAKFIIGMKQYGSFKL 960
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
S+S + L L++ Q+ D+G + S + L SL + IGDEG+ ++ + L
Sbjct: 780 SISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFN 839
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+S + G +G + +S + L S+++S+ I D + ++ L L SL + I G
Sbjct: 840 ISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGVEGAK 899
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+++ + LT LD+ +I D GA + K L+SL I + D G K I
Sbjct: 900 SISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISENQIGDEGAKFI 949
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+G + S + L SL++ IGDEG +++ + L L +S +G G++ + + L
Sbjct: 776 EGAKSISEMKQLTSLDIGENQIGDEGAKSISEMKQLTSLTISGNSIGDEGVKSIRKMKQL 835
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S N+S+ + ++ + L SL++ +I D G +++ L LT L + G I
Sbjct: 836 TSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAKSISELKQLTSLTISGNSIGV 895
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
GA + K L L+I + D G K I +L L L +S+N + D+ + I G+
Sbjct: 896 EGAKSISEMKQLTLLDIGENQIGDEGAKSISELKQLKSLTISEN-QIGDEGAKFIIGM 952
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
F+ LI+ K ++E + G ++ + +L SL+I N I D K +S + L SL
Sbjct: 758 FSKLISEEKEEMEHSIGVEGA-KSISEMKQLTSLDIG-ENQIGDEGAKSISEMKQLTSLT 815
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G+ ++ +++LT N+ A +S + L L+++ ++ D+G +
Sbjct: 816 ISGNSIGDEGVKSIRKMKQLTSFNISYNETGVAGAKFISEMKQLTSLDISYNEIGDEGAK 875
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
S L L SL + IG EG +++ + L L++ + Q+G G + +S L
Sbjct: 876 SISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIGENQIGDEGAKSISEL------- 928
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
LKSL + QI D G
Sbjct: 929 -----------------KQLKSLTISENQIGDEG 945
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+ +SG+ + D G+ ++ L S + ++ + G + + + LTSL
Sbjct: 806 SEMKQLTSLTISGNSIGDEGVKSIRKMKQLTSFNISYN-ETGVAGAKFISEMKQLTSLDI 864
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N I +G K+ + L L L + + G ++ + +L L+I N I D
Sbjct: 865 SYNE-IGDEGAKSISELKQLTSLTISGNSIGVEGAKSISEMKQLTLLDIG-ENQIGDEGA 922
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----KLTLLNL 211
K +S L LKSL IS +++ D G ++ G++ KL L+NL
Sbjct: 923 KSISELKQLKSLTISENQIGDEGAKFIIGMKQYGSFKLRLVNL 965
>gi|290995863|ref|XP_002680502.1| predicted protein [Naegleria gruberi]
gi|284094123|gb|EFC47758.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 1/220 (0%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
D+ + L +++ + D + S +T L SLN+ + + + + NL CL
Sbjct: 119 DAFKLMKGLTTFDISYTYVHDREAKIISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCL 178
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+ + +G +H+S + L +++ GI + ++ L L L++ + I + G
Sbjct: 179 NIGNNGIGVECAKHVSEMKQLTILHICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGA 238
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ L LT+LD++ RI GA ++ K L L I + G K+I ++ L L
Sbjct: 239 KYISQLKQLTNLDIYSNRIGAQGAKHISEMKQLTRLNISYNDINVEGAKYISEMKQLINL 298
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
N+++N N+ D+ ISG+ L +L + N+ I++AG +++
Sbjct: 299 NITKN-NIGDEGARHISGMNQLTNLFIGNNNISNAGFQNI 337
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 121/250 (48%), Gaps = 19/250 (7%)
Query: 134 VKLDLERCTRIHGGLV-NLKGLMKLESLN--IKWCNC----------------ITDSDMK 174
V++D+ + +R+ G + N+ + L ++N I++ + + D + K
Sbjct: 84 VRIDIGKMSRVQGQFLENIASVKALNAINHLIQYRDAFKLMKGLTTFDISYTYVHDREAK 143
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+S +T L SL +S S IAY + + LT LN+ + C +S + L L+
Sbjct: 144 IISEMTQLTSLNVSNSIRIKKSIAYFREMNNLTCLNIGNNGIGVECAKHVSEMKQLTILH 203
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ + +G + S L L L++ S IG++G ++ L L L++ ++G+ G +
Sbjct: 204 ICGNGIKFEGAKFISELQQLTKLDVSSNNIGEQGAKYISQLKQLTNLDIYSNRIGAQGAK 263
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
H+S + L +N+S+ I+ + ++ + L +LN+ I D G ++ + LT+L
Sbjct: 264 HISEMKQLTRLNISYNDINVEGAKYISEMKQLINLNITKNNIGDEGARHISGMNQLTNLF 323
Query: 355 LFGARITDSG 364
+ I+++G
Sbjct: 324 IGNNNISNAG 333
>gi|219821330|gb|ACL37798.1| internalin A [Listeria monocytogenes]
gi|219821348|gb|ACL37810.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ + N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|71912406|gb|AAZ53235.1| InlA [Listeria monocytogenes]
Length = 800
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 183/383 (47%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L SL L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTSLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D + L+SLT N N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSSLASLT------NINWLSAGHNQ 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|51850115|dbj|BAD42399.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 1035
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 184/409 (44%), Gaps = 9/409 (2%)
Query: 58 SLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
S+ +DLSG S V+++GL +L L SLD + I + G + L ++LTSL+
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDT-GIGNRGAQALAASASLTSLNLS 689
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N I G +A L LD+ + G L L SL ++ I D ++
Sbjct: 690 -GNGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELR-DTGIEDGGIE 747
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L+ T L+SL IS + ++D A L + LT L GC +T L+ + SL L
Sbjct: 748 ALAANTVLRSLDISGNDLSDQSAAALAANRTLTSLKANGCGLTNDMAQQLARIRSLRTLE 807
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ + D G +R +L SLNL I +GL L LK L++S G G
Sbjct: 808 VGSNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPLALSRTLKSLDVSRIGCGDRGAL 867
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSG L S+ L F IS R+LA +L SL+L I AL + L L+
Sbjct: 868 LLSGNRALTSLKLGFNRISSEGARRLAANRTLVSLDLRGNTIDVAAARALANAEPLASLN 927
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+ R+ D+ A L + L SL++ L+ + + D L L++S N ++ +
Sbjct: 928 VSDCRLDDAVACALAESRTLTSLDVSWNRLSHRAARALADNPVLASLDISHN-DIGPEGA 986
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ ++ L L+ +RI AG R L+ +R T ++ A D+
Sbjct: 987 QALADSASLTILDARANRIGEAGARLLEANTRMRG-TPQNPHFLAQDVP 1034
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 132/310 (42%), Gaps = 47/310 (15%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D + LSGL + L+ +LKG TL +L+ P T L
Sbjct: 94 DRRALSGLRDHPHLES----------VHLKG--DFTLADLKALPTT------------LR 129
Query: 232 YLNLNRCQLSDDGCEKFSRLTNL--ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
+L+L+ C S + L L ESLN+ IGD G L +LK L + +
Sbjct: 130 HLDLSECTGSAKSFRAIAYLAGLPLESLNVAGAEIGDGGARLLAANPSLKSLNAASGGIS 189
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
+SG R L+ LES++L+ I D + LAG SL+ L + +TD G AL
Sbjct: 190 ASGARMLAESPTLESLDLTQNAIGDAGAQALAGSRSLRHLAVRNGLVTDVGTRALALNPA 249
Query: 350 LTHLDL------------------FGARITDSGAAYLRNFKNLRSLEICGGGL-TDAGVK 390
L LDL IT GA L ++L+SL + G L D GV+
Sbjct: 250 LVSLDLGNLVTETGNQVEQDGYDKTANNITAQGAWALAQNRSLKSLSVQGNDLCGDDGVR 309
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRS 449
+ +LT LN++ N+T + + ++ L SL+V N + AG L ++L S
Sbjct: 310 ALARNRTLTSLNVAF-TNMTSASAKALADNPVLTSLSVRWNYGLDDAGAMELARSRSLTS 368
Query: 450 LTLESCKVTA 459
L ++A
Sbjct: 369 LDARDTGMSA 378
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 5/216 (2%)
Query: 253 NLESLNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
++ L+L C + + GL L L L L+LSDT +G+ G + L+ +L S+NLS
Sbjct: 632 SVRHLDLSGCTGSAVSEAGLAYLARLP-LASLDLSDTGIGNRGAQALAASASLTSLNLSG 690
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
GI L + L +L++ A I + G AL S LT L+L I D G L
Sbjct: 691 NGIGTAGAEALGRNTVLTALDISANPIRNAGAQALASSRSLTSLELRDTGIEDGGIEALA 750
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
LRSL+I G L+D + +LT L + C LT+ + ++ + L +L V
Sbjct: 751 ANTVLRSLDISGNDLSDQSAAALAANRTLTSLK-ANGCGLTNDMAQQLARIRSLRTLEVG 809
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
++ I AG+ + +LRSL L +T + L
Sbjct: 810 SNSIGDAGVLTIARNASLRSLNLSRNSITPQGLYPL 845
>gi|290984930|ref|XP_002675179.1| predicted protein [Naegleria gruberi]
gi|284088774|gb|EFC42435.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 139/314 (44%), Gaps = 30/314 (9%)
Query: 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
SDG + + +LT L R NN I +G ++ ++ L +L C I G + KG
Sbjct: 43 SDGNFQVFEMMKHLTHLDIR-NNGIGYEGAQSIGKVMQLTRL----C--IAGNNIGEKG- 94
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
K +S LT L +L +S +++ D G ++ L +LT LN+ G
Sbjct: 95 ------------------AKSISQLTQLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGN 136
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+T LS L L +LN++ + +G + + L L L++ I ++
Sbjct: 137 RITDKGAIFLSDLKELRFLNISSNTILLEGIKSLTNLKQLTQLDISYNNILPSYAQTISE 196
Query: 275 LCNLKCLELSDTQVG----SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ L L LS G S+G+R++ + NL+++ I + + L LN
Sbjct: 197 MDQLTNLNLSYNDYGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLN 256
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ + I + ++S+ LT LD+ I D GA ++ L SL + G + G +
Sbjct: 257 IRSSYIGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTE 316
Query: 391 HIKDLSSLTLLNLS 404
++K + LT LN+S
Sbjct: 317 YLKQMKQLTYLNIS 330
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 21/298 (7%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+D + + + +L L I + + G + + +LT L + G + S+S L
Sbjct: 43 SDGNFQVFEMMKHLTHLDIRNNGIGYEGAQSIGKVMQLTRLCIAGNNIGEKGAKSISQLT 102
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L L+++ QL D G + S+L+ L LN+ I D+G + L+ L L+ L +S +
Sbjct: 103 QLTTLDVSFNQLCDYGTKFISQLSRLTDLNIRGNRITDKGAIFLSDLKELRFLNISSNTI 162
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
G++ L+ L L +++S+ I + ++ + L +LNL
Sbjct: 163 LLEGIKSLTNLKQLTQLDISYNNILPSYAQTISEMDQLTNLNLSYND------------- 209
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
+G +G Y+ KNL++L G + +IK++ L LN+ ++
Sbjct: 210 -------YGWGSDSNGVRYICEMKNLKTLTFGGICIRQYIFNYIKEMKQLACLNI-RSSY 261
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ + +LIS + L L++S + I G +H+ + L SL +E C++ + + L+
Sbjct: 262 IGSSSAKLISSMNQLTELDISYNEIGDVGAKHISEMDQLTSLNVEGCRINSEGTEYLK 319
>gi|290981770|ref|XP_002673604.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
gi|284087189|gb|EFC40860.1| hypothetical protein NAEGRDRAFT_58930 [Naegleria gruberi]
Length = 494
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 144/296 (48%), Gaps = 15/296 (5%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI---TDSDMKPLSG 178
Q K F L KLD+ + G ++ L L SL++ N + +S ++ L
Sbjct: 163 QFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMN--NMVFMEKESKLELLES 220
Query: 179 LTNLKSLQISCSKVTDSGIAY-----LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
++ L Q++C ++ + + + + +++LT L++ ++ LS L L +L
Sbjct: 221 ISQLH--QLTCLNISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHL 278
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N+N + +G + S+LT L +L EG + + L L++S +G++G+
Sbjct: 279 NVNCTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGI 338
Query: 294 RHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
++LS + L +N++ I+ + + LS L L++ + I G+ A+++++ L
Sbjct: 339 KYLSKMKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNIGIEGVTAISTMSQL 398
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L++F RI +GA + +NL L+IC + G K I + LT L++++N
Sbjct: 399 RTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARN 454
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 19/293 (6%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGG-----LVNLKGLMKLESLNIKWCNCITDSDM 173
I +G K+ L +L LD+ + L ++ L +L LNI N + +
Sbjct: 184 IWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLNIS-SNNVGFNTF 242
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
KP+ + L L +S + ++D G L L +LT LN+ + +S L L L
Sbjct: 243 KPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAKYISKLTKLRTL 302
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG- 292
R +GC+ FS + L +L++ IG+ G+ L+ + L L ++D + G
Sbjct: 303 IAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGT 362
Query: 293 -----LRHLSGLTNLE--SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+R LS LT L S N+ G++ ++ +S L++LN+ +I G ++
Sbjct: 363 EESKLIRELSQLTKLSISSNNIGIEGVT-----AISTMSQLRTLNIFFNRIGLAGAKLIS 417
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ LT LD+ I +GA + K L L+I + + G K +K + L
Sbjct: 418 GMQNLTVLDICNNDIGTNGAKEISKMKQLTKLDIARNMIGNEGAKALKSMKQL 470
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 14/329 (4%)
Query: 37 CLGQYPGVNDKWMD-----VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
CL Q+ +N + + I + L +D+ S + G + + +L SLD N
Sbjct: 147 CLEQFESMNVRGISRLQFYKIFEKTKQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNM 206
Query: 92 IQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 147
+ + LE + L LT L+ NN + K + L LD+ G
Sbjct: 207 VFMEKESKLELLESISQLHQLTCLNISSNN-VGFNTFKPIGNVKQLTYLDVSWNYISDEG 265
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
L L +L LN+ C I K +S LT L++L + + G Y +++LT
Sbjct: 266 AKVLSQLSQLTHLNVN-CTIIGIEGAKYISKLTKLRTLIAARNNFWIEGCQYFSEMEQLT 324
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK---FSRLTNLESLNLDSCGI 264
L++ + + LS + L LN+N ++ G E+ L+ L L++ S I
Sbjct: 325 ALDVSHNSIGNTGIKYLSKMKQLTELNINDNAINQFGTEESKLIRELSQLTKLSISSNNI 384
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
G EG+ ++ + L+ L + ++G +G + +SG+ NL +++ I ++++ +
Sbjct: 385 GIEGVTAISTMSQLRTLNIFFNRIGLAGAKLISGMQNLTVLDICNNDIGTNGAKEISKMK 444
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHL 353
L L++ I + G AL S+ L L
Sbjct: 445 QLTKLDIARNMIGNEGAKALKSMKQLKSL 473
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 9/257 (3%)
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-----EKFSRLTNLESLN 258
++LT L++ + S++ L L L++N + E S+L L LN
Sbjct: 172 KQLTKLDIGKSIIWLEGFKSITELKHLNSLDMNNMVFMEKESKLELLESISQLHQLTCLN 231
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ S +G + + L L++S + G + LS L+ L +N++ T I +
Sbjct: 232 ISSNNVGFNTFKPIGNVKQLTYLDVSWNYISDEGAKVLSQLSQLTHLNVNCTIIGIEGAK 291
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ L+ L++L G + + LT LD+ I ++G YL K L L
Sbjct: 292 YISKLTKLRTLIAARNNFWIEGCQYFSEMEQLTALDVSHNSIGNTGIKYLSKMKQLTELN 351
Query: 379 ICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
I + G K I++LS LT L++S N N+ + + IS ++ L +LN+ +RI
Sbjct: 352 INDNAINQFGTEESKLIRELSQLTKLSISSN-NIGIEGVTAISTMSQLRTLNIFFNRIGL 410
Query: 436 AGLRHLKPLKNLRSLTL 452
AG + + ++NL L +
Sbjct: 411 AGAKLISGMQNLTVLDI 427
>gi|222630606|gb|EEE62738.1| hypothetical protein OsJ_17541 [Oryza sativa Japonica Group]
Length = 973
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 152/331 (45%), Gaps = 38/331 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+V S + L L+ LD + C +ISD G++H+ + +L L + +T G+ A
Sbjct: 649 NVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIESLEKLHVSQ-TGLTDNGVMAI 707
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+ LINL LDL GG+ TD ++ L LT L+ L I
Sbjct: 708 SSLINLRLLDL-------GGVR------------------FTDKALRSLQVLTQLEHLDI 742
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S++T+ G + L L+ LN+ VT CL L L LN++ C + +
Sbjct: 743 WGSEITNEGASVLIAFTSLSFLNISWTRVT--CLPILPTLRC---LNMSNCTIHSICNGE 797
Query: 248 FSRLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
F L +LE L + + G DE ++ +L L++S SS L L + NLE +
Sbjct: 798 FQVLIHLEKLIISAASFGNIDEVFSSILP-SSLTYLDMSSCS--SSNLYFLGNMRNLEHL 854
Query: 306 NLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDS 363
+LS++ I ++ +A + +LK L+L ++T L L ++ LT L L +I DS
Sbjct: 855 DLSYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKIDDS 914
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
Y+ +LR L + + D +K+ K+
Sbjct: 915 ALLYISMMPSLRILNLSRTCIKDERIKYSKE 945
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 155/329 (47%), Gaps = 12/329 (3%)
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ A+ + L L L C ++ V L G+ L+ L++ C+ I+D+ +K +
Sbjct: 624 AVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHI 683
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + +L+ L +S + +TD+G+ + L L LL+L G T L SL L L +L++
Sbjct: 684 ASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIW 743
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+++++G T+L LN+ + L L L+CL +S+ + S
Sbjct: 744 GSEITNEGASVLIAFTSLSFLNISWTRV-----TCLPILPTLRCLNMSNCTIHSICNGEF 798
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN-LDARQITDTGLAALTSLTGLTHLDL 355
L +LE + +S S G++ ++ SL LD + + L L ++ L HLDL
Sbjct: 799 QVLIHLEKLIIS--AASFGNIDEVFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLEHLDL 856
Query: 356 FGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKT 413
+RI Y+ N NL+ L + +T + + + SLT L+L+ + + D
Sbjct: 857 SYSRIISDAIEYIANIGMNLKFLSLSNSEVTSQALCVLAGTVPSLTTLSLA-HTKIDDSA 915
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLK 442
L IS + L LN+S + I +++ K
Sbjct: 916 LLYISMMPSLRILNLSRTCIKDERIKYSK 944
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 32/193 (16%)
Query: 267 EGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 324
E L L L+ L+L+D + V SS + LSG+ L+ ++LS + ISD ++ +A +
Sbjct: 628 EWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMRTLKELDLSRCSKISDAGIKHIASIE 687
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
SL+ L++ +TD G+ A++SL L LDL G R TD L+ L L+I G +
Sbjct: 688 SLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQVLTQLEHLDIWGSEI 747
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T+ G + +SL+ LN+S +R+T L L
Sbjct: 748 TNEGASVLIAFTSLSFLNISW-------------------------TRVTC-----LPIL 777
Query: 445 KNLRSLTLESCKV 457
LR L + +C +
Sbjct: 778 PTLRCLNMSNCTI 790
>gi|290980344|ref|XP_002672892.1| predicted protein [Naegleria gruberi]
gi|284086472|gb|EFC40148.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%)
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S + L SLN++ IG EG ++G+ L L +S +G G + +S + L SIN+S
Sbjct: 129 SEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINIS 188
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+ I + ++ + L SLN+ I DTG ++ + LT LD++ RI GA Y+
Sbjct: 189 YNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKYI 248
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
K L SL+I G + D VK I ++ LT L
Sbjct: 249 SEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L ++ +G+ G + +SG+ L S+N+S+ I D + ++ + L S+N+
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+I G ++ + LT L++ I D+GA ++ K L SL+I + G K+
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
I ++ LT L++ N + D+ ++LIS + L SL
Sbjct: 248 ISEMKQLTSLDIGGN-QIGDEEVKLISEMKQLTSL 281
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
++ + L SLN++ I G ++ + LT L++ I D GA + K L S+ I
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+ G K I ++ LT LN++ N + D + ISG+ L SL++ N+RI G +
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNS-IGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
++ +K L SL + ++ ++K + ++ L S R
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLIS--EMKQLTSLRK 283
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+N + +G + S + L SLN+ IGD+G ++ + L + +
Sbjct: 128 ISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISINI 187
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S ++ G + +S + L S+N++ I D + ++G+ L SL++ +I G
Sbjct: 188 SYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAKY 247
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ + LT LD+ G +I D + K L SL
Sbjct: 248 ISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 77/155 (49%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
++ +++LT LN+ G + A +S + L LN++ + D G + S + L S+N
Sbjct: 127 FISEMKELTSLNINGNVIGAEGAKFISGMKQLTSLNISYNVIGDKGAKLISEMKQLISIN 186
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ I EG ++ + L L +++ +G +G + +SG+ L S+++ I +
Sbjct: 187 ISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFISGMKELTSLDIYNNRIGREGAK 246
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
++ + L SL++ QI D + ++ + LT L
Sbjct: 247 YISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I K +SG+ L SL IS + + D G
Sbjct: 131 MKELTSLNIN-GNVIGAEGAKFISGMKQLTSLNISYNVIGDKG----------------- 172
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
A L +S + L +N++ ++ +G + S + L SLN+ + IGD G ++
Sbjct: 173 -----AKL--ISEMKQLISINISYNRICGEGAKFISEMKQLTSLNIANNSIGDTGAKFIS 225
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
G+ L L++ + ++G G +++S + L S+++ I D ++ ++ + L SL
Sbjct: 226 GMKELTSLDIYNNRIGREGAKYISEMKQLTSLDIGGNQIGDEEVKLISEMKQLTSL 281
>gi|223698613|gb|ACN18982.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQVGLN 328
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGL +L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 50/180 (27%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 2 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 59
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 60 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 93
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDIKRL 465
IS L+GL+SL + S G + LKPL NL TLE +++N + +
Sbjct: 94 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKVSDI 137
>gi|56797879|emb|CAH04901.1| internalin A [Listeria monocytogenes]
Length = 483
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 240
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 241 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 283
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 284 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 339
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 340 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 386
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 387 ISDLTPLANL----TRITQLGLN 405
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 46 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 90
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 91 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 142
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 143 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 195
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 196 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 251
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 252 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 283
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 284 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 312
>gi|290892407|ref|ZP_06555401.1| InlA protein [Listeria monocytogenes FSL J2-071]
gi|290557973|gb|EFD91493.1| InlA protein [Listeria monocytogenes FSL J2-071]
Length = 796
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 101 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 154
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 155 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 206
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 207 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 251
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 252 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 294
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 295 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 350
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 351 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 397
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 398 ISDLTPLANL----TRITQLGLN 416
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 57 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 101
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 102 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 153
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 154 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 207 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 257
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 258 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 293
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 294 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 323
>gi|294358387|gb|ADE73846.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQVGLN 413
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 72/339 (21%)
Query: 117 NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+A A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 50 DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN----------- 98
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
NL + S +++TD I LK L KL + + + A + L+ L +L
Sbjct: 99 --------NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTG 146
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L L Q++D + LTNL L L S I D + L+GL +L+ L + QV +
Sbjct: 147 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLISLQQLSFGN-QV--TD 199
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L+ L+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+
Sbjct: 200 LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTN 252
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LD L + G L D G + L++LT L+L+ N
Sbjct: 253 LD---------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---IS 286
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 287 NLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIADITPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 462
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|171910953|ref|ZP_02926423.1| probable G protein-coupled receptor LGR4 [Verrucomicrobium spinosum
DSM 4136]
Length = 400
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLE 212
L K+ESLNI C +D + PL L LK+L+ + + K++D+G+ L GL +L +
Sbjct: 147 LSKIESLNIIATKC-SDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSFV 205
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSRLTNLESLNLDSCGIGDEG 268
G + +L ++ + D+G C KF NLES++L GD G
Sbjct: 206 GTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFP---NLESISLAHAKCGDAG 262
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
+ L L LK LEL L H++ ++ LE + L + + + G+++L+
Sbjct: 263 VAQLPKLTKLKGLELGSKNATPGSLVHVAKMS-LEYLQLGDGLDAPEGIAAIKGMTTLRR 321
Query: 329 LNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
L L +A+ + D L A+ + GL L+L +TD L++F +L+ L I
Sbjct: 322 LTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIV 374
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 3/240 (1%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLT 273
P AA + + L + LN+ + SDD +L L++L + G + D GL L
Sbjct: 135 PYDAAFFEHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLA 194
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLD 332
GL L+ T + G T L ++ + I D L L A +L+S++L
Sbjct: 195 GLNQLEAFSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLA 254
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
+ D G+A L LT L L+L T ++ +L L++ G G+ I
Sbjct: 255 HAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPEGIAAI 313
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K +++L L L+ +L D L+ ++G+ GL SL +++ +T L LK +L+ L +
Sbjct: 314 KGMTTLRRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRI 373
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 5/225 (2%)
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLES 304
E +L+ +ESLN+ + D+ + L L LK L+ ++ ++ +GL L+GL LE+
Sbjct: 142 EHVGQLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEA 201
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFGARITDS 363
+ TG+ + K G ++L ++ I D GL L L + L A+ D+
Sbjct: 202 FSFVGTGMQGHAYAKFEGWTALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHAKCGDA 261
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G A L L+ LE+ T + H+ + SL L L + + + I G+T L
Sbjct: 262 GVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQLGDGLDAPE-GIAAIKGMTTL 319
Query: 424 VSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L ++N++ + A L+ + +K L SL L S ++T + L+S
Sbjct: 320 RRLTLTNAKSLGDADLQAVAGIKGLESLELNSVELTDERLPLLKS 364
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 51/281 (18%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
Q S + S+++ + +D + L L++L F ++SD GLE L GL+ L + SF
Sbjct: 146 QLSKIESLNIIATKCSDDWIAPLGKLKTLKTLKFTNNGKLSDAGLEKLAGLNQLEAFSF- 204
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ F G L ++ G ++ +GL L C
Sbjct: 205 VGTGMQGHAYAKFEGWTALTRVSH------RGSSIDDEGLTLL-------C--------- 242
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ NL+S+ ++ +K D+G+A L L KL L L T L ++ + SL YL
Sbjct: 243 --AKFPNLESISLAHAKCGDAGVAQLPKLTKLKGLELGSKNATPGSLVHVAKM-SLEYLQ 299
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGL 293
L DG + EG+ + G+ L+ L L++ + +G + L
Sbjct: 300 LG------DGLD------------------APEGIAAIKGMTTLRRLTLTNAKSLGDADL 335
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ ++G+ LES+ L+ ++D L L S LK L + R
Sbjct: 336 QAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIVNR 376
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
++L V GS + D GL L NL+S+ + D G+ L L+ L L
Sbjct: 221 TALTRVSHRGSSIDDEGLTLLCAKFPNLESISLAHA-KCGDAGVAQLPKLTKLKGLELGS 279
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESLNIKWCNCITD 170
NA L+++ K+ LE G G+ +KG+ L L + + D
Sbjct: 280 KNATPGS-------LVHVAKMSLEYLQLGDGLDAPEGIAAIKGMTTLRRLTLTNAKSLGD 332
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+D++ ++G+ L+SL+++ ++TD + LK L L + P
Sbjct: 333 ADLQAVAGIKGLESLELNSVELTDERLPLLKSFSHLKELRIVNRP 377
>gi|112959440|gb|ABI27247.1| truncated internalin A [Listeria monocytogenes]
gi|112959442|gb|ABI27248.1| truncated internalin A [Listeria monocytogenes]
gi|112959448|gb|ABI27251.1| truncated internalin A [Listeria monocytogenes]
gi|112959454|gb|ABI27254.1| truncated internalin A [Listeria monocytogenes]
gi|112959458|gb|ABI27256.1| truncated internalin A [Listeria monocytogenes]
gi|112959460|gb|ABI27257.1| truncated internalin A [Listeria monocytogenes]
gi|112959462|gb|ABI27258.1| truncated internalin A [Listeria monocytogenes]
gi|112959472|gb|ABI27263.1| truncated internalin A [Listeria monocytogenes]
gi|112959480|gb|ABI27267.1| truncated internalin A [Listeria monocytogenes]
gi|112959482|gb|ABI27268.1| truncated internalin A [Listeria monocytogenes]
gi|112959488|gb|ABI27271.1| truncated internalin A [Listeria monocytogenes]
gi|112959514|gb|ABI27284.1| truncated internalin A [Listeria monocytogenes]
gi|112959538|gb|ABI27296.1| truncated internalin A [Listeria monocytogenes]
gi|112959542|gb|ABI27298.1| truncated internalin A [Listeria monocytogenes]
gi|112959548|gb|ABI27301.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|320165418|gb|EFW42317.1| tyrosine-protein kinase CSK [Capsaspora owczarzaki ATCC 30864]
Length = 953
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 3/280 (1%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L++ + N IT +GLT L +L + +++T GL LT L+
Sbjct: 19 FTGLTALTELSLLY-NQITGISAGTFTGLTALTALYFASNQITSIPADAFTGLTALTHLS 77
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-RLTNLESLNLDSCGIGDEGL 269
L+ +T+ + ++L +L YL+L Q++ F+ LT L L+LDS I +
Sbjct: 78 LQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITSIPV 137
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
TGL L L L Q+ S + +GLT L S+ L I+ GL +L L
Sbjct: 138 GAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLPALTEL 197
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L QIT A T LT LT+L + +IT A + L L + G +T
Sbjct: 198 SLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQITSIPD 257
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
L++LT L L QN +T L GL ++L++S
Sbjct: 258 FSFTGLTALTTLAL-QNNPITTLPPGLFKGLPNALALSLS 296
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 123/284 (43%), Gaps = 13/284 (4%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLES 159
GL+ LT LS N IT F GL L L + T I GL L
Sbjct: 19 FTGLTALTELSLLYNQ-ITGISAGTFTGLTALTALYFASNQITSIPADA--FTGLTALTH 75
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
L++++ N IT + LT L L + +++T SG A+ L LT L+L+ +T+
Sbjct: 76 LSLQY-NQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDSNQITS 134
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ + + L +L YL+L Q++ F+ LT L SL L + I TGL L
Sbjct: 135 IPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLPAL 194
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L Q+ S +GLT L +++ T I G+ LA L+ L +LD Q
Sbjct: 195 TELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDL---HLDGNQ 251
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
IT + T LT LT L L IT + N +L +
Sbjct: 252 ITSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALALSL 295
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 2/246 (0%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
P+T+ ++ + L +L L+L Q++ F+ LT L +L S I TG
Sbjct: 10 PITSIPTNAFTGLTALTELSLLYNQITGISAGTFTGLTALTALYFASNQITSIPADAFTG 69
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDA 333
L L L L Q+ S + LT L ++L + I+ S L++L L+LD+
Sbjct: 70 LTALTHLSLQYNQITSISGTAFTSLTALTYLSLQYNQITSISGTAFTFNLTALTYLSLDS 129
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
QIT + A T LT LT+L L+ +IT L SL + +T
Sbjct: 130 NQITSIPVGAFTGLTALTYLSLYTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACT 189
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L +LT L+L N +T + +GLT L L+V N++ITS L L L L+
Sbjct: 190 GLPALTELSLGIN-QITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLD 248
Query: 454 SCKVTA 459
++T+
Sbjct: 249 GNQITS 254
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 4/225 (1%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144
SL +N IS L L+ L SL + + +I+ + + LD + T I
Sbjct: 77 SLQYNQITSISGTAFTSLTALTYL-SLQYNQITSISGTAFTFNLTALTYLSLDSNQITSI 135
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
G GL L L++ + N IT + +GLT L SL + +++T A GL
Sbjct: 136 PVGA--FTGLTALTYLSL-YTNQITSISVNAFTGLTALASLVLQNNQITSIPAAACTGLP 192
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
LT L+L +T+ D+ + L +L YL++ Q++ F+ L L L+LD I
Sbjct: 193 ALTELSLGINQITSIPADAFTGLTALTYLSVENNQITSIPAGAFTDLAALTDLHLDGNQI 252
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+ TGL L L L + + + GL N +++LS+
Sbjct: 253 TSIPDFSFTGLTALTTLALQNNPITTLPPGLFKGLPNALALSLSY 297
>gi|281211117|gb|EFA85283.1| Histidine kinase A [Polysphondylium pallidum PN500]
Length = 1839
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 200/414 (48%), Gaps = 55/414 (13%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ++ L + V D + IA+ L++V L ++TD+ +IHL + C + +L + C
Sbjct: 1413 LQNINLNKCRAVTDDKIIAIANMQLPLVNVYLKKCNITDNAIIHLTQSCPKIAALQLSGC 1472
Query: 92 IQISDGGLEHLRGLSN---LTSLSFRRNNAITAQGM-KAFAGLINLVKLDL-ERCTRIHG 146
+ D + + +N L L +R +T+ + K F L N+ + L E +
Sbjct: 1473 KNLGDASINAI--ATNCLGLRELRMKRCPLVTSNSIDKMFRLLHNIHIVTLAESPMAVSD 1530
Query: 147 GLVNLKGLM--KLESLNIKWCNCITDSDMKPLSGLTN-LKSLQIS-CSKVTDSGIAYL-K 201
+ L G +++ +N+ + ITD + L TN ++ L IS C +TD GI ++ +
Sbjct: 1531 NTLRLMGKYCTEIQCVNVSHNSIITDVGLINLVKFTNTIQELNISQCVNITDIGIQHIAQ 1590
Query: 202 GLQKLTLLNLEGC-------PVTAACLDSLSALGSLFYLNLNRC-QLSDD------GCEK 247
KL +L + G P+ +C D L L+++ C ++S D GC K
Sbjct: 1591 ACGKLRILRMSGLNNVTSLKPIGKSCAD-------LVELDISECHKISSDLGYITKGCPK 1643
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTN---- 301
L S L C G+ D L++ G + + L + D G+ + + +T+
Sbjct: 1644 ------LTSFKLRRCYGLQDVSLLSEDGEIHAMSKLSVLDWSYGNIEFQTIHSITHSCKS 1697
Query: 302 LESINLSF-TGISDGSLRKLAG-LSSLKSLNLDAR-QITDTGLAALTSL---TGLTHLDL 355
L S+N+S+ ++D S+ ++A LS+LK L +D+ ITD G+ AL+ + + L L
Sbjct: 1698 LTSLNISYCKSLTDTSIERIASSLSNLKKLKMDSVVNITDDGIKALSEAPIASSIEDLSL 1757
Query: 356 FGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS-QNC 407
G R I+D A Y+ F NL+ L + G +T AGV+ I S L+ +S +NC
Sbjct: 1758 VGCRKISDVSAQYILRFHNLKKLSLGGCLMTTAGVESIA-AESFELVKISIRNC 1810
>gi|290997880|ref|XP_002681509.1| predicted protein [Naegleria gruberi]
gi|284095133|gb|EFC48765.1| predicted protein [Naegleria gruberi]
Length = 226
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L L +++ Q+ G + +L L +L+++ IGDEG ++ + L L +
Sbjct: 46 ISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHV 105
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D Q+G G++++S + L + + GI D + ++G+ L L++ +I D G
Sbjct: 106 GDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKF 165
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
++ + LT L +F RI D GA Y+ K L L+I + D G K I + L L
Sbjct: 166 ISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRL 223
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 1/220 (0%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
+N++ L D + S + L +L + + IGDEG ++ + L L +S Q+G+ G
Sbjct: 7 VNVSENLLDSDNVKFISEMKQLVALFVPTNRIGDEGTKLISEMKQLISLGISKNQIGAKG 66
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++L L L +++++ I D + ++ + L L++ QI G+ ++ + LT
Sbjct: 67 VKYLCKLKQLIALDINRNRIGDEGAKLISKMKQLTLLHVGDNQIGVKGVKYISEMKQLTC 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L ++G I D GA + K L L I + D G K I ++ LT L++ N + D+
Sbjct: 127 LYIYGNGIGDEGAKLISGMKQLTELSIGHNEIGDEGAKFISEMKQLTELSIFYN-RIGDE 185
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ IS + L L++ ++RI G + + +K L+ L L
Sbjct: 186 GAKYISEMKQLTDLDIRHNRIGDKGEKLISGMKKLKRLCL 225
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D K +S + L SL IS +++ G+ YL L++L L++ + +S
Sbjct: 36 NRIGDEGTKLISEMKQLISLGISKNQIGAKGVKYLCKLKQLIALDINRNRIGDEGAKLIS 95
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ L L++ Q+ G + S + L L + GIGDEG ++G+ L L +
Sbjct: 96 KMKQLTLLHVGDNQIGVKGVKYISEMKQLTCLYIYGNGIGDEGAKLISGMKQLTELSIGH 155
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G + +S + L +++ + I D + ++ + L L++ +I D G ++
Sbjct: 156 NEIGDEGAKFISEMKQLTELSIFYNRIGDEGAKYISEMKQLTDLDIRHNRIGDKGEKLIS 215
Query: 346 SLTGLTHLDLF 356
+ L L L+
Sbjct: 216 GMKKLKRLCLY 226
>gi|125536975|gb|EAY83463.1| hypothetical protein OsI_38675 [Oryza sativa Indica Group]
Length = 702
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 223/519 (42%), Gaps = 93/519 (17%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS------------------------- 67
++ +CL + GV + +D + + L +VDLS
Sbjct: 104 VRRVCLARASGVGWRGLDALVAACPRLEAVDLSHCVGAGDREAAALAAATGLRELSLEKC 163
Query: 68 -DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLE-------HLRGLS----NLTSLSFR 114
VTD GL + C L+ L +C +ISD G++ LR L L L
Sbjct: 164 LGVTDMGLAKVVVGCPRLEKLSLKWCREISDIGIDLLSKKCHDLRSLDISYLKLLGLGMI 223
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV------------NLKGLMKLESLNI 162
+ T + +K V D+E GL ++ L KLE L +
Sbjct: 224 CGSTATNKAVKCDFDSSLWVDFDMENVQSSELGLTGWLILVGNESLRSISSLEKLEELAM 283
Query: 163 KWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIA---------------------- 198
C+CI D ++ L G +L+S+ +S C VT G+A
Sbjct: 284 VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLNAADSLHEMR 343
Query: 199 --YLKGLQKL----TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKF-SR 250
+L L KL T+L L+G V ++ L ++ +L + L++C ++D+G ++
Sbjct: 344 QSFLSNLAKLKDTLTVLRLDGLEVASSVLLAIGGCNNLVEIGLSKCNGVTDEGISSLVTQ 403
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNL-KCLEL-SDTQVGSSGLRHLS-GLTNLESINL 307
++L ++L C + ++ C + + L L S + + GL ++ NL+ I+L
Sbjct: 404 CSHLRVIDLTCCNSLQQCPDSIAENCKMVERLRLESCSSISEKGLEQIATSCPNLKEIDL 463
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTG-LTHLDLFGAR-ITDSG 364
+ G++D +LR LA S L L L I+D GLA ++S G L LDL+ ITD G
Sbjct: 464 TDCGVNDAALRPLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLYRCNSITDDG 523
Query: 365 AAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLT 421
A L N K ++ L +C +TD G+ H+ L LT L L +T + ++ G
Sbjct: 524 LAALANGCKKIKMLNLCYCNKITDTGLGHLGSLEELTNLELRCLVRITGIGISSVAIGCK 583
Query: 422 GLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLESCKVT 458
L+ +++ + AGL L NLR LT+ C+VT
Sbjct: 584 NLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVT 622
>gi|219821300|gb|ACL37778.1| internalin A [Listeria monocytogenes]
gi|219821378|gb|ACL37830.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + L+NL
Sbjct: 35 GLKYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|149175637|ref|ZP_01854257.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
gi|148845622|gb|EDL59965.1| putative serine/threonine-protein kinase [Planctomyces maris DSM
8797]
Length = 718
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L LE+L+L+ C + D+ L L G LK L+L +T + ++GL H+S L NL ++L
Sbjct: 564 LAKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKN 623
Query: 311 -GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I+D L+ LA L L S+NLD ITD G+ + L L++ +I+D+ L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLI 683
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKD 394
+++L + G +TD G++ IK+
Sbjct: 684 KLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L GL LE+++L + D +L L G +LK+L+L +T+ GL+ ++SL LTHL L
Sbjct: 561 LKGLAKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSL 620
Query: 356 FGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R ITD G L N K L S+ + +TD G+ IK L LN+ ++ ++D ++
Sbjct: 621 QKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNI-KDTQISDTSI 679
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLK 442
L+ L + +L + S+IT G++ +K
Sbjct: 680 PLLIKLNRMKNLYLEGSKITDQGIQKIK 707
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 32/214 (14%)
Query: 165 CNCITDSDMKPLSGLTNL-------KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
C I D +P++ + L + ++ +T +A LKGL KL L+LE C V
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
DD L++L+L G+ + GL +++ L N
Sbjct: 579 ------------------------DDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLN 614
Query: 278 LKCLELS-DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L L + ++ GL+ L+ L L SINL I+D + + L LN+ QI
Sbjct: 615 LTHLSLQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQI 674
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+DT + L L + +L L G++ITD G ++N
Sbjct: 675 SDTSIPLLIKLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 5/165 (3%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
IT M PL GL L++L + V D +A L+G L L+L +T A L +S+L
Sbjct: 553 ITREVMAPLKGLAKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSL 612
Query: 228 GSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+L +L+L + +++D+G + + L L S+NLD I DEG+ + L L + DT
Sbjct: 613 LNLTHLSLQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDT 672
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLK 327
Q+ + + L L ++++ L + I+D ++K+ AG +K
Sbjct: 673 QISDTSIPLLIKLNRMKNLYLEGSKITDQGIQKIKNAYAGRDPIK 717
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L ++ L V D L L+ L++LD + +++ GL H+ L NLT LS ++N
Sbjct: 565 AKLETLHLEDCHVMDDALAPLEGKLTLKTLDLHET-GLTNAGLSHISSLLNLTHLSLQKN 623
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G++A A L L ++L+R G+ +K +L+ LNIK I+D+ + L
Sbjct: 624 REITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIK-DTQISDTSIPLL 682
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKG 202
L +K+L + SK+TD GI +K
Sbjct: 683 IKLNRMKNLYLEGSKITDQGIQKIKN 708
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 8/186 (4%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFR------RNNAITAQGMKAFAGLINLVKLDLERCTRI 144
C I DG E + + L + F IT + M GL L L LE C +
Sbjct: 519 CEIIIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVM 578
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGL 203
L L+G + L++L++ +T++ + +S L NL L + ++ +TD G+ L L
Sbjct: 579 DDALAPLEGKLTLKTLDLHETG-LTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANL 637
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
+KL+ +NL+ +T + + L +LN+ Q+SD +L +++L L+
Sbjct: 638 KKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLLIKLNRMKNLYLEGSK 697
Query: 264 IGDEGL 269
I D+G+
Sbjct: 698 ITDQGI 703
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQI-------TDTGLAALTSLTGLTHLDLFGARITDSG 364
I DG + + L ++ R+I T +A L L L L L + D
Sbjct: 522 IIDGRYEPVTQVQELPVVDFYIREIKFHPQTITREVMAPLKGLAKLETLHLEDCHVMDDA 581
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A L L++L++ GLT+AG+ HI L +LT L+L +N +TD+ L+ ++ L L
Sbjct: 582 LAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLSLQKNREITDEGLQALANLKKLS 641
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
S+N+ IT G+ +K L L ++ +++ I L
Sbjct: 642 SINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSIPLL 682
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 1/147 (0%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+GL+ L +L + + + G + L LDL + GL ++ L+ L L+
Sbjct: 561 LKGLAKLETLHLE-DCHVMDDALAPLEGKLTLKTLDLHETGLTNAGLSHISSLLNLTHLS 619
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ ITD ++ L+ L L S+ + +TD GI ++K +L LN++ ++ +
Sbjct: 620 LQKNREITDEGLQALANLKKLSSINLDRLNITDEGITFIKHNPRLDWLNIKDTQISDTSI 679
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKF 248
L L + L L +++D G +K
Sbjct: 680 PLLIKLNRMKNLYLEGSKITDQGIQKI 706
>gi|313485061|gb|ADR53004.1| InlA [Listeria monocytogenes]
Length = 724
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|384252696|gb|EIE26172.1| RNI-like protein [Coccomyxa subellipsoidea C-169]
Length = 663
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 52/309 (16%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
IT+ D L GL+ L+ LQ + + S ++ L+GL++L + N+ G +
Sbjct: 186 ITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLEMANVVG---------A 236
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCL 281
A G F LT L SL + DS + L+ L +L+ L
Sbjct: 237 YPAEGDAF----------------LKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQEL 280
Query: 282 ELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDT 339
L++ + GL +LS LT+L + L G+++G LR L+ L+SL++ DA ++TDT
Sbjct: 281 SLTEHLHLLLPGLTNLSALTDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDT 340
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L+SLTGLTHLD ++ R+ +T+AGV + L++L
Sbjct: 341 GLHHLSSLTGLTHLDF-------CSPSHRRD-----------EDITNAGVAALSALTNLR 382
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT 458
LNL+ + +T + L ++ T L L++S + + G+ L L NLRSL L+ +++
Sbjct: 383 SLNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLS 442
Query: 459 ANDIKRLQS 467
+++L S
Sbjct: 443 NEHVQQLGS 451
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 140/295 (47%), Gaps = 27/295 (9%)
Query: 102 LRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLE 158
L+ L+ L+SL R N++ TA+ M + L +L +L L E + GL NL L L
Sbjct: 245 LKSLTKLSSLRMR-NDSATAKLPPMHCLSELRSLQELSLTEHLHLLLPGLTNLSALTDLR 303
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L + +T+ ++ LT L+SL I +VTD+G+ +L L LT L+
Sbjct: 304 QLRLVKVG-VTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDF------ 356
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLC 276
C S + +++ G S LTNL SLNL + EGL L
Sbjct: 357 --CSPS----------HRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFLADAT 404
Query: 277 NLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L CL+LS +G +G + L+ LTNL S+ L T +S+ +++L L++L SL L
Sbjct: 405 ALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLTALTSLGLAWCA 464
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV 389
I D AAL LT L LD+ +T++G L R +L + G T G+
Sbjct: 465 IDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGCPATSIGI 519
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 7/199 (3%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-----RRNNAITAQGMKAFAGLINLVK 135
+ LQSL +++D GL HL L+ LT L F RR+ IT G+ A + L NL
Sbjct: 324 TKLQSLHIPDAFRVTDTGLHHLSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRS 383
Query: 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L + + GL L L L++ + L+ LTNL+SL + +++++
Sbjct: 384 LNLAGHSEVTAEGLAFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSN 443
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTN 253
+ L L LT L L C + +L+ L L L++ C +++ G + SR + +
Sbjct: 444 EHVQQLGSLTALTSLGLAWCAIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPD 503
Query: 254 LESLNLDSCGIGDEGLVNL 272
L ++ C G+ L
Sbjct: 504 LAIFAVEGCPATSIGIWRL 522
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQ-------ISDGGLEHLRGLSNLTSLSFRRNNAITA 121
VTD+GL HL + L LDF C I++ G+ L L+NL SL+ ++ +TA
Sbjct: 337 VTDTGLHHLSSLTGLTHLDF--CSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTA 394
Query: 122 QGMKAF--------------------------AGLINLVKLDLERCTRIHGGLVNLKGLM 155
+G+ AF A L NL L L+R + + L L
Sbjct: 395 EGL-AFLADATALTCLDLSGLPLGPTGGVDFLASLTNLRSLCLQRTQLSNEHVQQLGSLT 453
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC 214
L SL + WC I D L+ LT L L + +T++G+ L + + L + +EGC
Sbjct: 454 ALTSLGLAWC-AIDDEAAAALAPLTKLADLDVRYCPMTNAGLCQLSRAMPDLAIFAVEGC 512
Query: 215 PVTA 218
P T+
Sbjct: 513 PATS 516
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS----DTQVGSSGLRHLSGLTNLE 303
F R+T+L L I + V L GL L+ L+ + D + S L L GL LE
Sbjct: 173 FPRVTDLR---LRRFLITERDAVLLGGLSRLQHLQFNAVAFDGRTLISKLSSLQGLRQLE 229
Query: 304 SINL--SFTGISDGSLRKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLT---HLDLF 356
N+ ++ D L+ L LSSL+ N A+ L+ L SL L+ HL L
Sbjct: 230 MANVVGAYPAEGDAFLKSLTKLSSLRMRNDSATAKLPPMHCLSELRSLQELSLTEHLHLL 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+T+ L +LR L + G+T+ ++ L+ L L++ +TD L
Sbjct: 290 LPGLTN-----LSALTDLRQLRLVKVGVTNGVLRCAGALTKLQSLHIPDAFRVTDTGLHH 344
Query: 417 ISGLTGLVSLNV---SNSR---ITSAGLRHLKPLKNLRSLTLE-SCKVTANDIKRL 465
+S LTGL L+ S+ R IT+AG+ L L NLRSL L +VTA + L
Sbjct: 345 LSSLTGLTHLDFCSPSHRRDEDITNAGVAALSALTNLRSLNLAGHSEVTAEGLAFL 400
>gi|71668063|ref|XP_820975.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886340|gb|EAN99124.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 930
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/463 (25%), Positives = 203/463 (43%), Gaps = 59/463 (12%)
Query: 4 RDISQQIFNELVYSRCLTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSV 62
R ++Q +L YS +T+ SL A R C L L L Q+ G M ++ + SL +
Sbjct: 412 RALNQLRVLDLGYS-SVTDDSLTALRFCPELAKLDL-QWCGRITSLMCLVGALCDSLREL 469
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
+L+ + VTD GL+ LKD + L+ + C +SD + L NLT L
Sbjct: 470 NLTETSVTDEGLVPLKDFAALEWISLEGCGAVSDVNV-----LCNLTRLR---------- 514
Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
++D+ R + G+V+L L + ++ C +TD++ L L L
Sbjct: 515 ------------EVDVGRTRVTNRGVVSLSQCQALRVMRMRQCYRLTDANF--LGALQQL 560
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ + +S VT+ GIA L G + L L L+ C ++ L L L L+L+ + +
Sbjct: 561 EEVDLSDCPVTNEGIAALFGARSLRKLRLQSCHAVND-VNFLGGLEHLMLLDLHHTTVDE 619
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G ++ L +L + S + N L LK L+LS T+V S L L
Sbjct: 620 EGSVGLAQCPQLMTLIMHSVLVHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPV 679
Query: 302 LESINL-----------------SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
LE+++L S TG+ R + ++ + + D G + +
Sbjct: 680 LETLSLRGCKNITHLDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPI 739
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
++T + I + A + + LR L + G G+TD G++ ++ L L L+
Sbjct: 740 ETMTTNDGV------IKSTAVAAVVSRHRLRELTLSGTGVTDEGLRALQYCPGLERLRLA 793
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
N TD + ++ L+ L L++S + +T +GL L P NL
Sbjct: 794 HCKNFTD--VAVLRWLSQLKELDLSATGVTGSGLAKLSPSGNL 834
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 137/283 (48%), Gaps = 11/283 (3%)
Query: 179 LTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L+ L +S ++VT+ G+ + L KL+ L+LEGC + L L AL L L+L
Sbjct: 366 LCALRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKIES-LQWLRALNQLRVLDLGY 424
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHL 296
++DD L L+L CG + + LC+ L+ L L++T V GL L
Sbjct: 425 SSVTDDSLTALRFCPELAKLDLQWCGRITSLMCLVGALCDSLRELNLTETSVTDEGLVPL 484
Query: 297 SGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
LE I+L G +SD ++ L L+ L+ +++ ++T+ G+ +L+ L + +
Sbjct: 485 KDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNRGVVSLSQCQALRVMRM 542
Query: 356 FG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
R+TD A +L + L +++ +T+ G+ + SL L L Q+C+ + +
Sbjct: 543 RQCYRLTD--ANFLGALQQLEEVDLSDCPVTNEGIAALFGARSLRKLRL-QSCHAVND-V 598
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+ GL L+ L++ ++ + G L L +L + S V
Sbjct: 599 NFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVLV 641
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 108/449 (24%), Positives = 187/449 (41%), Gaps = 55/449 (12%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
LS+ +S S L H C+ L+ LD ++ +G + L+ L+ LS I
Sbjct: 347 LSLCMSSSVSCTRFLRHRSLCA-LRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKI 405
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ ++ L L LDL + L L+ +L L+++WC IT S M + L
Sbjct: 406 --ESLQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRIT-SLMCLVGAL 462
Query: 180 TN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L+ L ++ + VTD G+ LK L ++LEGC + ++ L L L +++ R
Sbjct: 463 CDSLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSD-VNVLCNLTRLREVDVGRT 521
Query: 239 QLSDDGCEKFS--------------RLTN---------LESLNLDSCGIGDEGLVNLTGL 275
++++ G S RLT+ LE ++L C + +EG+ L G
Sbjct: 522 RVTNRGVVSLSQCQALRVMRMRQCYRLTDANFLGALQQLEEVDLSDCPVTNEGIAALFGA 581
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L+ L L + + L GL +L ++L T + + LA L +L + +
Sbjct: 582 RSLRKLRLQSCH-AVNDVNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSVL 640
Query: 336 ITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+ A L L LDL ++T ++LR L +L + G K+I
Sbjct: 641 VHSLQQWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPVLETLSL-------RGCKNITH 693
Query: 395 LSSLTLLNLSQN--CNLTDKTLE-------LIS--------GLTGLVSLNVSNSRITSAG 437
L L L S C + + +E +I+ G + + ++ ++ I S
Sbjct: 694 LDFLILQPSSGTGVCAIVPRDVEPHDTVGDIIAGKEKNPDDGPSPIETMTTNDGVIKSTA 753
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ + LR LTL VT ++ LQ
Sbjct: 754 VAAVVSRHRLRELTLSGTGVTDEGLRALQ 782
>gi|298359896|gb|ADI77527.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|171912739|ref|ZP_02928209.1| Leucine-rich repeat [Verrucomicrobium spinosum DSM 4136]
Length = 443
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 141/276 (51%), Gaps = 26/276 (9%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L +++ + VTD L L S+L+ +F+F G+ L L+ +T+L
Sbjct: 173 ALQQLNICSTKVTD--LEPLAGLSSLRQFNFSFT------GVTELDPLAKITTLQQLEFR 224
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+ A AGL L KLDL T + L L GL L+ L + N SD+ PL+
Sbjct: 225 LAPIFDLDALAGLRELQKLDLS-TTEVRD-LEPLSGLGALQKL---YFNHTAVSDLGPLA 279
Query: 178 GLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
GL+ L+ L + C+ +VTD I L GL L L L VT L L+ L +L +L+L+
Sbjct: 280 GLSALRKLDLRCARRVTD--IGPLAGLHALQRLILASTQVTD--LTPLTELRNLQHLDLS 335
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R ++SD + LT L SL L S + D L L +L+ L L TQV S L +
Sbjct: 336 RTKVSD--LSPLTSLTALRSLGLTSTQVSD--LAPLAAYRDLQRLFLDSTQV--SDLGPV 389
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+G+ +L+ + +S T ++D L LAGL+ LK L++D
Sbjct: 390 AGMNSLQELYVSHTSVTD--LGPLAGLTELKRLSVD 423
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 203/462 (43%), Gaps = 92/462 (19%)
Query: 20 LTEVSLEAFRDCALQDLCLG-QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLK 78
L EV LE L+ L LG Y KW + S + G+ S L HL
Sbjct: 34 LDEVPLEVAELSHLRQLSLGWNYSPSAKKW-----NPDRSFFN---PGAMSNLSELAHLP 85
Query: 79 -DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
+ +L++ FN C + G LR L NL S S+ RN ++ + L L L+
Sbjct: 86 LEWLDLRATGFNNCAALE--GFSALRSL-NL-SHSYVRN-------IEPLSALSQLQCLE 134
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
L C + + K L +L +L + SD++PL+ L L+ L I +KVTD
Sbjct: 135 L--C---QTQVTDFKPLQRLGALQQLDLYSTSVSDLEPLAALHALQQLNICSTKVTD--- 186
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L+ L+ L SL N + +++ + +++T L+ L
Sbjct: 187 -----------------------LEPLAGLSSLRQFNFSFTGVTE--LDPLAKITTLQQL 221
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
I D L L GL L+ L+LS T+V L LSGL L+ + + T +SD L
Sbjct: 222 EFRLAPIFD--LDALAGLRELQKLDLSTTEV--RDLEPLSGLGALQKLYFNHTAVSD--L 275
Query: 318 RKLAGLSSLKSLNLD-ARQITDTG--------------------LAALTSLTGLTHLDLF 356
LAGLS+L+ L+L AR++TD G L LT L L HLDL
Sbjct: 276 GPLAGLSALRKLDLRCARRVTDIGPLAGLHALQRLILASTQVTDLTPLTELRNLQHLDLS 335
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+++D + L + LRSL + ++D A + +DL L L+ +Q +L
Sbjct: 336 RTKVSD--LSPLTSLTALRSLGLTSTQVSDLAPLAAYRDLQRL-FLDSTQVSDLGP---- 388
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++G+ L L VS++ +T G L L L+ L+++ C V
Sbjct: 389 -VAGMNSLQELYVSHTSVTDLG--PLAGLTELKRLSVDECAV 427
>gi|149242645|pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 213
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 214 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 256
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 257 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 312
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 313 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 359
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 360 ISDLTPLANL----TRITQLGLN 378
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 110
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ +N G
Sbjct: 111 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQLNF---GNQV 162
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 218
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 219 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 273
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 274 -----NISPLAGLTALT 285
>gi|149242641|pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
gi|149242643|pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 116
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ LN + N +TD +KPL
Sbjct: 117 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLN--FGNQVTD--LKPL 168
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 169 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 213
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 214 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 256
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 257 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 312
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 313 FNNISD--ISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQ--------- 359
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 360 ISDLTPLANL----TRITQLGLN 378
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 110
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ +N G
Sbjct: 111 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQLNF---GNQV 162
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 218
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 219 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 273
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 274 -----NISPLAGLTALT 285
>gi|404406915|ref|YP_006689630.1| internalin A [Listeria monocytogenes SLCC2376]
gi|130774829|gb|ABO32427.1| InlA [Listeria monocytogenes]
gi|167861972|gb|ACA05685.1| InlA [Listeria monocytogenes]
gi|194326147|emb|CAQ77232.1| internalin A [Listeria monocytogenes]
gi|404241064|emb|CBY62464.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2376]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|18413537|emb|CAD21866.1| hypothetical leucine-rich repeat protein 1 (LRRP1) [Trypanosoma
brucei]
Length = 1393
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 178/419 (42%), Gaps = 56/419 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVRRICA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+KL L++ CN ITD+ P+S L+ L+ L +S +T GI L L +L +L+L G
Sbjct: 247 CVKLSKLSVSECNNITDA--TPISQLSALEELNLSNCHIT-KGIGTLGMLLRLRILDLSG 303
Query: 214 CPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
PV CL L GSL LN++ R QL+D S T +E LNL+ C G+ +
Sbjct: 304 VPVEDNCLKDLCDCGSLERLNISYRIQLTD--INPLSNATAIEELNLNGCRRITRGIGVV 361
Query: 273 TGLCNLKCLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLSF 309
L L+ L + D VG+ G + LS + LE +N+
Sbjct: 362 WALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQK 421
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD---- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 422 CADIISGVGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALAN 481
Query: 355 --------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L G D+G L N L+ L++ G + ++ + ++ LNLS
Sbjct: 482 ILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHC 541
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T+ + IS L L LN+SN +AG ++ L+ L L + +T DI
Sbjct: 542 WKMTN--VSHISSLEALNELNLSNCFGINAGWEAIEKLQQLHVAILSNTHITDRDISHF 598
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 180/403 (44%), Gaps = 18/403 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G D+G+ L + L+ LD + ++ E LR L + T +S +
Sbjct: 484 TLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG----TNTDNESLRSLCLSQTVVSLNLS 539
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C I+ G ++ L +L + I ITD D+
Sbjct: 540 HCWKMTNVSHISSLEALNELNLSNCFGINAGWEAIEKLQQLH-VAILSNTHITDRDISHF 598
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S NL +L +S C+K+ D + L + L LNL+ C L L L L LN+
Sbjct: 599 SNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 656
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
QL D + L+L++C G GD + L+ L L+ L L +SG+
Sbjct: 657 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGD--VAPLSNLVTLEELNLHYCDKVTSGMG 714
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTGLTH 352
L L L ++L T + D SL + SS L SLNL + ++IT ++A+ SLT L
Sbjct: 715 TLGRLLQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTALEE 772
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ SG LR + D ++H+ + SL LNL+ ++TD
Sbjct: 773 LNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITDV 832
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
T +S +T L LN+ G+ L L R L+++ C
Sbjct: 833 T--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 873
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 178/424 (41%), Gaps = 67/424 (15%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
+DLSG V D+ L L DC +L+ L+ ++ IQ++D + LSN T++
Sbjct: 299 LDLSGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE--------- 344
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC---------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 345 -------------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPL 391
Query: 166 ------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 392 VKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSL 451
Query: 220 CLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+ A SL LN+ LS+ E + + LE L+L C D G+ L L L
Sbjct: 452 DFTGIGASKSLLQLNMESITGLSN--VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQL 509
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDAR 334
K L+LS T + LR L + S+NLS T +S ++ L +L LNL
Sbjct: 510 KMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVS-----HISSLEALNELNLSNC 564
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHI 392
+ G A+ L L L ITD ++ N KNL +L++ C L + +I
Sbjct: 565 FGINAGWEAIEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLDVTALSNI 624
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
L L L +C+ K L ++ L L LN+ ++ + + L + L+L
Sbjct: 625 TTLEELNL----DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSL 680
Query: 453 ESCK 456
E+CK
Sbjct: 681 ENCK 684
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 149/327 (45%), Gaps = 40/327 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1019 ITAKDIACLSSCKKLVKLKFFRCKKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1076
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---L 283
L L + +L + SD E +L L+++ +G+E L ++T L N+ LE L
Sbjct: 1077 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIE---VGEE-LTDITPLSNITSLEELSL 1132
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA 342
D + G+ L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++
Sbjct: 1133 RDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--IS 1190
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTL 400
+++LT L L+L G SG L LR +LE D G +I L
Sbjct: 1191 HISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLEFTRVTTRDGGY-YISRCKYLVT 1249
Query: 401 LNLSQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGL 438
LNL + C++TD KTL EL G + L + LN+ S IT L
Sbjct: 1250 LNL-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDL 1308
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRL 465
R ++P + L L C V NDI L
Sbjct: 1309 REIQPPHTIEELNLSYC-VELNDITPL 1334
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 204/508 (40%), Gaps = 103/508 (20%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 555 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 612
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 613 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 667
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 668 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLLQLRVL 725
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ +C K+T S IA L L++L + N C VT+
Sbjct: 726 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNC--CNVTS 783
Query: 219 AC-----------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ +S SL LNL C+ D S++T LE
Sbjct: 784 GWNVFGTLHQLRVATLSNTRTNDENIRHVSECKSLNTLNLAFCKDITD-VTALSKITMLE 842
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
LNLD C +G+ L L + L + + +G + S L N +S+ S G
Sbjct: 843 ELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRG 902
Query: 316 --SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF- 371
S++ L+ +++L+ L LD AR++ + S + L L + + TD +N
Sbjct: 903 RISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNIS 957
Query: 372 --KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K+LRSL + +TD V +N CN K E + L L +
Sbjct: 958 ESKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAIL 1014
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCK 456
S+++IT+ + L K L L CK
Sbjct: 1015 SDTKITAKDIACLSSCKKLVKLKFFRCK 1042
>gi|283781267|ref|YP_003372022.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
gi|283439720|gb|ADB18162.1| hypothetical protein Psta_3501 [Pirellula staleyi DSM 6068]
Length = 436
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 32/329 (9%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+ L + L G V+D S+LQ L + I++ GL+ LR S L S S
Sbjct: 88 KPPQLAHLGLWGEGVSDEVFARSVALSDLQFLSI-YETNITNEGLQVLRKFSKLRSFSVA 146
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ A +K +R GL L+ + +ESL + + SD+
Sbjct: 147 PVSRYEKSMYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQ-LAPSDLA 205
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L S+ +S + +T + +L ++++ L L +TA + +L SL L
Sbjct: 206 ILQSWPKLGSIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLM 264
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L +LS D + L +LE L+L+ C + D+ L +L L L L ++ GLR
Sbjct: 265 LLHAKLSSDALAALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLR 324
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA--------------------- 333
HL L+ I L F IS+ +L +LA L +L++LNL
Sbjct: 325 HLVPF-QLKQIGLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVR 383
Query: 334 -------RQITDTGLAALTSLTGLTHLDL 355
+Q+TD LA + +T L H+ +
Sbjct: 384 QLGLRGLKQVTDASLAEIVKMTHLKHITI 412
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 149/344 (43%), Gaps = 35/344 (10%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
W ++D L++L+ L I + +T+ G+ L+ KL ++ PV+ S
Sbjct: 98 WGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSV--APVSR-YEKS 154
Query: 224 LSALGSLFYLNL----NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+ Y L +R +++ G E + +ESL L + L L L
Sbjct: 155 MYGAPQWSYPFLKQRSDRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAILQSWPKLG 214
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+ LS T + S ++HL+ + ++ L + I+ +R L SLK L L +++
Sbjct: 215 SIALSTT-MTSEAVQHLAACKRVSNLTLGYREITADEIRALGEWESLKKLMLLHAKLSSD 273
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLR-----NFKNLRSLEICGGGL---------- 384
LAAL SL L LDL +TD A+L+ L+ EI G GL
Sbjct: 274 ALAALASLESLEQLDLEECNLTDDDLAHLKLPAKLTILGLKRNEIDGPGLRHLVPFQLKQ 333
Query: 385 --------TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSN-SRI 433
++A + + L +L LNLS + ++ +E ++ +T + L + ++
Sbjct: 334 IGLEFNNISNATLGELAQLRTLETLNLSYCRQIDNQGIESGVLQRMTHVRQLGLRGLKQV 393
Query: 434 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
T A L + + +L+ +T+ ++ + ++++ +P V F+
Sbjct: 394 TDASLAEIVKMTHLKHITIRETGISWESVDKMKA-AMPETVVFK 436
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 11/222 (4%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+ L L L G+ DE L +L+ L + +T + + GL+ L + L S +++
Sbjct: 88 KPPQLAHLGLWGEGVSDEVFARSVALSDLQFLSIYETNITNEGLQVLRKFSKLRSFSVAP 147
Query: 310 TGISDGSLRKLAGLSS--LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ S+ S LK + D +IT GL L ++ + L L A++ S A
Sbjct: 148 VSRYEKSMYGAPQWSYPFLKQRS-DRPKITVQGLEPLRNIATIESLQLIDAQLAPSDLAI 206
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L+++ L S+ + +T V+H+ K +S+LTL +T + + L
Sbjct: 207 LQSWPKLGSIALS-TTMTSEAVQHLAACKRVSNLTL----GYREITADEIRALGEWESLK 261
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
L + +++++S L L L++L L LE C +T +D+ L+
Sbjct: 262 KLMLLHAKLSSDALAALASLESLEQLDLEECNLTDDDLAHLK 303
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 59/265 (22%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNA 118
S+ LS + +T + HL C + +L + +D +R L SL +
Sbjct: 215 SIALS-TTMTSEAVQHLAACKRVSNLTLGYREITAD----EIRALGEWESLKKLMLLHAK 269
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+++ + A A L +L +LDLE C +TD D+ L
Sbjct: 270 LSSDALAALASLESLEQLDLEECN-------------------------LTDDDLAHLKL 304
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L L + +++ G+ +L Q L + LE ++ A L L+ L +L LNL+ C
Sbjct: 305 PAKLTILGLKRNEIDGPGLRHLVPFQ-LKQIGLEFNNISNATLGELAQLRTLETLNLSYC 363
Query: 239 -QLSDDGCEK--FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
Q+ + G E R+T++ L GL LK QV + L
Sbjct: 364 RQIDNQGIESGVLQRMTHVRQL----------------GLRGLK-------QVTDASLAE 400
Query: 296 LSGLTNLESINLSFTGISDGSLRKL 320
+ +T+L+ I + TGIS S+ K+
Sbjct: 401 IVKMTHLKHITIRETGISWESVDKM 425
>gi|194239378|emb|CAQ76829.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNKISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|223006802|gb|ACM69358.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821396|gb|ACL37842.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|85679218|gb|ABC72025.1| InlA [Listeria monocytogenes]
gi|85679232|gb|ABC72032.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|340052071|emb|CBY84387.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|126143308|gb|ABN80096.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITPLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|428303964|ref|YP_007140789.1| hypothetical protein Cri9333_0293 [Crinalium epipsammum PCC 9333]
gi|428245499|gb|AFZ11279.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 409
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 32/287 (11%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++ DS + L+ ++ LD N +I+ LE ++ L NLT L N +
Sbjct: 128 EIPDSKRLTLEVLQGIKVLDANNA-EIT--SLEGIQALRNLTILRLDGNKI---SDVTPL 181
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
AGL NL L L+ H + ++K L L +L++ + N SD+ PL+GL NL+ L++
Sbjct: 182 AGLTNLRNLRLD-----HSQISDVKPLTGLTNLSVLYLNKNQISDVTPLAGLINLRDLRL 236
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF-YLNLNRCQLSD--DG 244
++++D + L G L+NL G + + +S + LF ++NL L+D D
Sbjct: 237 DQNQISD--VTPLAG-----LINLRGLGLDQ---NQISDVKPLFGFVNLTTLYLNDNSDV 286
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
FS L NL L L I D + LT L NL LEL Q+ S ++ L+ L L
Sbjct: 287 TPLFS-LANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQI--SDVKPLASLARLTR 341
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 350
++L+ ISD + LAGL+ L SL L QI+D L LT+L+GL
Sbjct: 342 LSLNDNQISD--VEPLAGLAKLTSLRLSQNQISDVKPLTGLTNLSGL 386
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 133/262 (50%), Gaps = 20/262 (7%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+ + +L+G+ L +L I + SD+ PL+GLTNL++L++ S+++D + L GL
Sbjct: 150 NAEITSLEGIQALRNLTILRLDGNKISDVTPLAGLTNLRNLRLDHSQISD--VKPLTGLT 207
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
L++L L ++ L+ L +L L L++ Q+SD + L NL L LD I
Sbjct: 208 NLSVLYLNKNQISDVT--PLAGLINLRDLRLDQNQISD--VTPLAGLINLRGLGLDQNQI 263
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
D + L G NL L L+D +S + L L NL + L ISD ++ L L+
Sbjct: 264 SD--VKPLFGFVNLTTLYLND----NSDVTPLFSLANLTVLTLYDNKISD--VKPLTALT 315
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L LD QI+D + L SL LT L L +I+D L L SL + +
Sbjct: 316 NLTVLELDQNQISD--VKPLASLARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQNQI 371
Query: 385 TDAGVKHIKDLSSLTLLNLSQN 406
+D VK + L++L+ L LS N
Sbjct: 372 SD--VKPLTGLTNLSGLGLSDN 391
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 132/255 (51%), Gaps = 33/255 (12%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G+ ++D + L +NL++L + QISD ++ L GL+NL+ L +N
Sbjct: 170 LDGNKISD--VTPLAGLTNLRNLRLDHS-QISD--VKPLTGLTNLSVLYLNKNQI---SD 221
Query: 124 MKAFAGLINL--VKLDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ AGLINL ++LD + + + GL+NL+GL L+ I SD+KPL G
Sbjct: 222 VTPLAGLINLRDLRLDQNQISDVTPLAGLINLRGL-GLDQNQI--------SDVKPLFGF 272
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL +L ++ +S + L L LT+L L ++ + L+AL +L L L++ Q
Sbjct: 273 VNLTTLYLN----DNSDVTPLFSLANLTVLTLYDNKISD--VKPLTALTNLTVLELDQNQ 326
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
+SD + + L L L+L+ I D + L GL L L LS Q+ S ++ L+GL
Sbjct: 327 ISD--VKPLASLARLTRLSLNDNQISD--VEPLAGLAKLTSLRLSQNQI--SDVKPLTGL 380
Query: 300 TNLESINLSFTGISD 314
TNL + LS IS+
Sbjct: 381 TNLSGLGLSDNPISN 395
>gi|85679224|gb|ABC72028.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|219821357|gb|ACL37816.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESIIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+S+ QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESIIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|85679228|gb|ABC72030.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|84043404|ref|XP_951492.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348240|gb|AAQ15567.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62358736|gb|AAX79191.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1394
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 171/433 (39%), Gaps = 79/433 (18%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL L+L + +
Sbjct: 189 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTDIDDSCIGEISA 246
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
KL L++ CN ITD+ P+S L+ L+ L + SC +T GI L L +L +L+L
Sbjct: 247 CAKLSKLSVSECNNITDA--TPISQLSALEELNLNSCYHIT-KGIGTLGMLLRLRILDLS 303
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G PV CL L GSL LN++ C QL+D S T +E LNL+ C G+
Sbjct: 304 GVPVEDNCLKDLCDCGSLERLNISYCIQLTD--INPLSNATAIEELNLNGCRRITRGIGV 361
Query: 272 LTGLCNLKCLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLS 308
+ L L+ L + D VG+ G + LS + LE +N+
Sbjct: 362 VWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQ 421
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLT------ 351
+ L L L+ LN+ I+ TG+ A + S+TGL
Sbjct: 422 KCADIISGVGSLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLIDVEALA 481
Query: 352 ------HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------------------- 386
L L G D+G L N L+ L++ G +
Sbjct: 482 NILTLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSH 541
Query: 387 ----AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
V HI L +L LNLS NC + E I L L +SN+ IT + H
Sbjct: 542 CWKMTNVSHISSLEALNELNLS-NCFGINAGWEAIEKLQQLHVAILSNTHITDRNISHFS 600
Query: 443 PLKNLRSLTLESC 455
KNL +L L C
Sbjct: 601 KCKNLVTLDLSFC 613
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 139/522 (26%), Positives = 213/522 (40%), Gaps = 108/522 (20%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 556 ALNELNLSNCFGINAGWEAIEKLQ--QLHVAILSNTHITDRNISHFSKCKNLVTLDLSFC 613
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L +L+L+ C+ I GL L
Sbjct: 614 NKLLD-----VTALSNITTLE----------------------ELNLDSCSNIRKGLSVL 646
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LNIK +C D+ PLS L L+ L +
Sbjct: 647 GELPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGDVTPLSNLVTLEELNLHY 706
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
C KVT SG+ L L +L +L+L V L+++ ++ L LNL+ C+
Sbjct: 707 CDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCK-KITSISS 764
Query: 248 FSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ LT LE LN+D SC + G L L+ LS+T++ +R++S +L ++N
Sbjct: 765 IASLTALEELNIDNSCNV-TSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLN 823
Query: 307 LSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
L+F I+D + L+ ++ L+ LNLD G+ L +L L + + DS A
Sbjct: 824 LAFCKDITD--VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECYMGDSDA 881
Query: 366 ---AYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------------- 407
+ L N K+L +LE G ++ + +I L L L + + C
Sbjct: 882 QQCSILWNSKSLVKLNLERSMGFISVKALSNIATLEELVLGHARKVCCIPSFSCLPRLRV 941
Query: 408 ------NLTDKTLELISGLTGLVSLNVSNSRITS-----------------------AGL 438
+ D + IS L SLN+S+ + + G
Sbjct: 942 LNLKYTDFNDDVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGW 1001
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVSFRPE 479
L L LR L +TA DI L S + L L FR E
Sbjct: 1002 ESLGKLPLLRVAILSDTNITAKDIACLSSCKTLVKLKFFRCE 1043
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 40/336 (11%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
H+ L L+ + C I + G E + L L ++ N IT + + F+ NLV
Sbjct: 550 HISSLEALNELNLSNCFGI-NAGWEAIEKLQQL-HVAILSNTHITDRNISHFSKCKNLVT 607
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTD 194
LDL C ++ D+ LS +T L+ L + SCS +
Sbjct: 608 LDLSFCNKLL--------------------------DVTALSNITTLEELNLDSCSNIR- 640
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
G++ L L +L +LN++G + + + SL GSL ++L+ C D S L L
Sbjct: 641 KGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGGSLVKVSLDDCAGFGD-VTPLSNLVTL 699
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGIS 313
E LNL C G+ L L L+ L+L TQV ++ L ++ + L S+NLS
Sbjct: 700 EELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVSLNLSHCK-K 758
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
S+ +A L++L+ LN+D +G +L L L RI D Y+ K+
Sbjct: 759 ITSISSIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKS 818
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L +L + A K I D+++L+ + + + NL
Sbjct: 819 LNTLNL-------AFCKDITDVTALSKITMLEELNL 847
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 184/468 (39%), Gaps = 104/468 (22%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + + D + ++ +C +L +L+ FC I+D
Sbjct: 800 LSNTRINDENIRYVSECKSLNTLNLAFCKDITD--------------------------- 832
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ A + + L +L+L+ C I G+ L L K L++K C + DSD + S L N K
Sbjct: 833 VTALSKITMLEELNLDCCPNIRKGIETLGTLPKAGILSMKECY-MGDSDAQQCSILWNSK 891
Query: 184 SL-----QISCSKVTDSGIAYLKGLQKLTLLNLEG--CPVTAACLDSLSALG-------- 228
SL + S ++ ++ + L++L L + C + +CL L L
Sbjct: 892 SLVKLNLERSMGFISVKALSNIATLEELVLGHARKVCCIPSFSCLPRLRVLNLKYTDFND 951
Query: 229 ----------SLFYLNLNRCQLSDD-----------------------GCEKFSRLTNLE 255
SL LNL+ C+ D G E +L L
Sbjct: 952 DVTKNISESKSLQSLNLSHCKWVTDISVLSSLLALEELNVNCCNGIRKGWESLGKLPLLR 1011
Query: 256 SLNLDSCGIGDEGLV------NLTGLCNLKCLELSDTQVG--------------SSGLRH 295
L I + + L L +C +LSD V S GL+
Sbjct: 1012 VAILSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVYEIQSLEELIVRSCSDGLKG 1071
Query: 296 LSGL-TNLESINLSFTGI--SDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLT 351
L+ L T L + SD S+ + SL L+++ R+ +TDT L+++T L
Sbjct: 1072 LNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDLTDT--TPLSNITSLE 1129
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L L G L L+SL++ ++++ + +I S+T LNL + LTD
Sbjct: 1130 ELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDSSWELTD 1189
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ IS LT L LN+ ++G + L L LR L LES +VT
Sbjct: 1190 --ISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTT 1235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 181/411 (44%), Gaps = 42/411 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS +++T + L C L L F C ++SD + + + +L L R + G
Sbjct: 1015 LSDTNITAKDIACLSSCKTLVKLKFFRCEKLSDVTVVY--EIQSLEELIVRS----CSDG 1068
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGL---MKLESLNIKWCNCITDSDMKPLSGLT 180
+K L L +L + G ++++ + L L+I+ +TD+ PLS +T
Sbjct: 1069 LKGLNALGTLPRLRFLLLRNVRGSDISVESIGTSKSLVRLHIEMREDLTDT--TPLSNIT 1126
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQ 239
+L+ L + G+ L+ L +L L+L ++ + L+ + S+ LNL+ +
Sbjct: 1127 SLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLNYIFLSRSITSLNLDSSWE 1186
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSG 298
L+D S LT LE LNL C G L+ L L+ L L T+V + ++S
Sbjct: 1187 LTD--ISHISNLTALEELNLGGCYYITSGWKALSELPRLRVLNLESTRVTTRYDGYYISR 1244
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+L ++NL ++D S +A + +L+ L++ + G +AL +L L L+L +
Sbjct: 1245 CKSLVTLNLELCDMTDASY--IANIKTLEELHIGKCKELTQGFSALFTLPRLRILNLICS 1302
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELI 417
ITD ++ I+ ++ LNLS L D T L I
Sbjct: 1303 LITDED------------------------LREIQPPHTIEELNLSYCVELNDITPLGRI 1338
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
+ L ++R ++ G R L L L + L++ V+++ ++ L R
Sbjct: 1339 KSIKKLHLRQSHDARRSTEGFRSLLELPCLSWVDLKNASVSSDILRELGKR 1389
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 15/244 (6%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+DL SD+++S L ++ ++ SL+ + +++D + H+ L+ L L+
Sbjct: 1152 LKSLDLGLSDISNSTLNYIFLSRSITSLNLDSSWELTD--ISHISNLTALEELNLGGCYY 1209
Query: 119 ITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT+ G KA + L L L+LE R T + G + L +LN++ C+ +D +
Sbjct: 1210 ITS-GWKALSELPRLRVLNLESTRVTTRYDGYY-ISRCKSLVTLNLELCDM---TDASYI 1264
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ + L+ L I K G + L L +L +LNL +T L + ++ LNL+
Sbjct: 1265 ANIKTLEELHIGKCKELTQGFSALFTLPRLRILNLICSLITDEDLREIQPPHTIEELNLS 1324
Query: 237 RC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---ELSDTQVGSSG 292
C +L+D R+ +++ L+L L L CL +L + V S
Sbjct: 1325 YCVELND--ITPLGRIKSIKKLHLRQSHDARRSTEGFRSLLELPCLSWVDLKNASVSSDI 1382
Query: 293 LRHL 296
LR L
Sbjct: 1383 LREL 1386
>gi|290976253|ref|XP_002670855.1| predicted protein [Naegleria gruberi]
gi|284084418|gb|EFC38111.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 2/261 (0%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
C Q+ D + LTSL NN I G K+ + + L L+++ + G +
Sbjct: 11 CNQLGDESAHKISQFKQLTSLGVE-NNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHS 69
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ + +L L+I N I D K + L L +L IS +++T +G+ K +++L +LN
Sbjct: 70 ISNMTRLTHLDISLNN-IGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILN 128
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ + ++++S L L L++ C ++G + S+LTNL L S I +EG
Sbjct: 129 VGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAK 188
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+++ L + CL L + + G +H+S + L + + I D L GL +LK L+
Sbjct: 189 SISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLS 248
Query: 331 LDARQITDTGLAALTSLTGLT 351
+ I+ + A+ L T
Sbjct: 249 IRGNNISYDMVQAIHELGKFT 269
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 1/231 (0%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+ L L+L QL D+ K S+ L SL +++ IG G +++ + L L + +
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
VG G +S +T L +++S I D + + L L +LN+ QIT G+
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ L L++ RI + G + L L+I G + G K I L++LT L N
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N+ ++ + IS L + LN+ + + + G +H+ +K L L ++S ++
Sbjct: 181 -NIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEI 230
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 4/276 (1%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
++ L L + C+++ D + ++LT L +E + S+S + L LN+
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ +G S +T L L++ IGDEG + L L L +S Q+ S+G+
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +N+ I + + ++GLS L L++ + G +++ LT LT L
Sbjct: 121 MKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I + GA + + + L +C L G KHI + LT L + N + D E +
Sbjct: 181 NIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSN-EIGDDGAEDLC 239
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
GL L L++ + I+ ++ + L T+ES
Sbjct: 240 GLENLKVLSIRGNNIS---YDMVQAIHELGKFTVES 272
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 27/273 (9%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
CN + D +S L SL + +++ +G + +++LT LN++ V S+
Sbjct: 11 CNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNNSVGVEGAHSI 70
Query: 225 SALGSLFYL------------------------NLNRCQLSDDGCEKFSRLTNLESLNLD 260
S + L +L N++ Q++ +G F + L LN+
Sbjct: 71 SNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFKEMKQLIILNVG 130
Query: 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
S IG+EG+ N++GL L L++ G+ G + +S LTNL + I + + +
Sbjct: 131 SNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCCSNNIREEGAKSI 190
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
+ L + LNL + G ++ + LTHL + I D GA L +NL+ L I
Sbjct: 191 SQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDLCGLENLKVLSIR 250
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
G ++ V+ I +L T + NL D+T
Sbjct: 251 GNNISYDMVQAIHELGKFT---VESEGNLFDET 280
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 2/257 (0%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S LT LS N + + + L L +E G ++ + +L SLNIK
Sbjct: 1 MSQLTELSLECN-QLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKN 59
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + +S +T L L IS + + D G + L++LT LN+ +T+ +
Sbjct: 60 -NSVGVEGAHSISNMTRLTHLDISLNNIGDEGAKIICQLKQLTNLNISYNQITSNGMIPF 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ L LN+ ++ ++G E S L+ L L++ C G+EG +++ L NL CL
Sbjct: 119 KEMKQLIILNVGSNRIGNEGIENISGLSQLTELDIGGCDFGNEGAKSISQLTNLTCLYCC 178
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ G + +S L + +NL + + ++ + L L +D+ +I D G L
Sbjct: 179 SNNIREEGAKSISQLEKVTCLNLCVNYLHADGAKHISQMKQLTHLYMDSNEIGDDGAEDL 238
Query: 345 TSLTGLTHLDLFGARIT 361
L L L + G I+
Sbjct: 239 CGLENLKVLSIRGNNIS 255
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+S L L+L+ Q+ D ++ LT L + I +GA + K L SL I
Sbjct: 1 MSQLTELSLECNQLGDESAHKISQFKQLTSLGVENNEIGPTGAKSISTMKQLTSLNIKNN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ G I +++ LT L++S N N+ D+ ++I L L +LN+S ++ITS G+ K
Sbjct: 61 SVGVEGAHSISNMTRLTHLDISLN-NIGDEGAKIICQLKQLTNLNISYNQITSNGMIPFK 119
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
+K L L + S ++ I+ +
Sbjct: 120 EMKQLIILNVGSNRIGNEGIENI 142
>gi|223006796|gb|ACM69355.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821309|gb|ACL37784.1| internalin A [Listeria monocytogenes]
gi|219821393|gb|ACL37840.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|150371726|dbj|BAF65678.1| internalin A [Listeria monocytogenes]
gi|194326151|emb|CAQ77234.1| internalin A [Listeria monocytogenes]
gi|298360180|gb|ADI77669.1| internalin A [Listeria monocytogenes]
gi|298360390|gb|ADI77774.1| internalin A [Listeria monocytogenes]
gi|298360416|gb|ADI77787.1| internalin A [Listeria monocytogenes]
gi|298360620|gb|ADI77889.1| internalin A [Listeria monocytogenes]
gi|298360656|gb|ADI77907.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485075|gb|ADR53008.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821375|gb|ACL37828.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|219821363|gb|ACL37820.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDINPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|167862002|gb|ACA05700.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821318|gb|ACL37790.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|167861924|gb|ACA05661.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLSDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 259
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 260 GNQLKDIGT--LASLTNLSDLDLANN--------QISNLAPL------------------ 291
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 292 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347552|gb|AAM95921.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 90 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 143
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 144 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 202
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 252
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 NISPLAGLTALT 264
>gi|313485065|gb|ADR53005.1| InlA [Listeria monocytogenes]
Length = 801
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821264|gb|ACL37754.1| internalin A [Listeria monocytogenes]
gi|219821306|gb|ACL37782.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|167862040|gb|ACA05719.1| InlA [Listeria monocytogenes]
gi|194326153|emb|CAQ77235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774813|gb|ABO32419.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|46906689|ref|YP_013078.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|254932755|ref|ZP_05266114.1| internalin A [Listeria monocytogenes HPB2262]
gi|405748809|ref|YP_006672275.1| internalin A [Listeria monocytogenes ATCC 19117]
gi|405751670|ref|YP_006675135.1| internalin A [Listeria monocytogenes SLCC2378]
gi|417316727|ref|ZP_12103366.1| internalin A [Listeria monocytogenes J1-220]
gi|424713328|ref|YP_007014043.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|424822183|ref|ZP_18247196.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|50400895|sp|Q723K6.1|INLA_LISMF RecName: Full=Internalin-A; Flags: Precursor
gi|46879954|gb|AAT03255.1| internalin A [Listeria monocytogenes serotype 4b str. F2365]
gi|130774757|gb|ABO32393.1| InlA [Listeria monocytogenes]
gi|130774763|gb|ABO32396.1| InlA [Listeria monocytogenes]
gi|130774781|gb|ABO32405.1| InlA [Listeria monocytogenes]
gi|130774785|gb|ABO32407.1| InlA [Listeria monocytogenes]
gi|130774789|gb|ABO32409.1| InlA [Listeria monocytogenes]
gi|167861870|gb|ACA05634.1| InlA [Listeria monocytogenes]
gi|167861880|gb|ACA05639.1| InlA [Listeria monocytogenes]
gi|167861882|gb|ACA05640.1| InlA [Listeria monocytogenes]
gi|167861884|gb|ACA05641.1| InlA [Listeria monocytogenes]
gi|167861886|gb|ACA05642.1| InlA [Listeria monocytogenes]
gi|167861896|gb|ACA05647.1| InlA [Listeria monocytogenes]
gi|167861898|gb|ACA05648.1| InlA [Listeria monocytogenes]
gi|167861910|gb|ACA05654.1| InlA [Listeria monocytogenes]
gi|167861912|gb|ACA05655.1| InlA [Listeria monocytogenes]
gi|167861952|gb|ACA05675.1| InlA [Listeria monocytogenes]
gi|167861958|gb|ACA05678.1| InlA [Listeria monocytogenes]
gi|167861960|gb|ACA05679.1| InlA [Listeria monocytogenes]
gi|167861966|gb|ACA05682.1| InlA [Listeria monocytogenes]
gi|167861988|gb|ACA05693.1| InlA [Listeria monocytogenes]
gi|167861996|gb|ACA05697.1| InlA [Listeria monocytogenes]
gi|167862008|gb|ACA05703.1| InlA [Listeria monocytogenes]
gi|167862010|gb|ACA05704.1| InlA [Listeria monocytogenes]
gi|167862014|gb|ACA05706.1| InlA [Listeria monocytogenes]
gi|167862016|gb|ACA05707.1| InlA [Listeria monocytogenes]
gi|194239380|emb|CAQ76830.1| internalin A [Listeria monocytogenes]
gi|194239394|emb|CAQ76837.1| internalin A [Listeria monocytogenes]
gi|194326167|emb|CAQ77242.1| internalin A [Listeria monocytogenes]
gi|223006786|gb|ACM69350.1| internalin A [Listeria monocytogenes]
gi|223006788|gb|ACM69351.1| internalin A [Listeria monocytogenes]
gi|223006798|gb|ACM69356.1| internalin A [Listeria monocytogenes]
gi|223006804|gb|ACM69359.1| internalin A [Listeria monocytogenes]
gi|223006810|gb|ACM69362.1| internalin A [Listeria monocytogenes]
gi|293584308|gb|EFF96340.1| internalin A [Listeria monocytogenes HPB2262]
gi|294358391|gb|ADE73848.1| InlA [Listeria monocytogenes]
gi|294358403|gb|ADE73854.1| InlA [Listeria monocytogenes]
gi|298359884|gb|ADI77521.1| internalin A [Listeria monocytogenes]
gi|298359898|gb|ADI77528.1| internalin A [Listeria monocytogenes]
gi|298359902|gb|ADI77530.1| internalin A [Listeria monocytogenes]
gi|298359908|gb|ADI77533.1| internalin A [Listeria monocytogenes]
gi|298359940|gb|ADI77549.1| internalin A [Listeria monocytogenes]
gi|298359948|gb|ADI77553.1| internalin A [Listeria monocytogenes]
gi|298360056|gb|ADI77607.1| internalin A [Listeria monocytogenes]
gi|298360094|gb|ADI77626.1| internalin A [Listeria monocytogenes]
gi|298360148|gb|ADI77653.1| internalin A [Listeria monocytogenes]
gi|298360270|gb|ADI77714.1| internalin A [Listeria monocytogenes]
gi|298360288|gb|ADI77723.1| internalin A [Listeria monocytogenes]
gi|298360324|gb|ADI77741.1| internalin A [Listeria monocytogenes]
gi|298360326|gb|ADI77742.1| internalin A [Listeria monocytogenes]
gi|298360350|gb|ADI77754.1| internalin A [Listeria monocytogenes]
gi|298360362|gb|ADI77760.1| internalin A [Listeria monocytogenes]
gi|298360456|gb|ADI77807.1| internalin A [Listeria monocytogenes]
gi|298360480|gb|ADI77819.1| internalin A [Listeria monocytogenes]
gi|298360508|gb|ADI77833.1| internalin A [Listeria monocytogenes]
gi|298360520|gb|ADI77839.1| internalin A [Listeria monocytogenes]
gi|298360554|gb|ADI77856.1| internalin A [Listeria monocytogenes]
gi|298360632|gb|ADI77895.1| internalin A [Listeria monocytogenes]
gi|298360634|gb|ADI77896.1| internalin A [Listeria monocytogenes]
gi|298360662|gb|ADI77910.1| internalin A [Listeria monocytogenes]
gi|328475915|gb|EGF46639.1| internalin A [Listeria monocytogenes J1-220]
gi|332310863|gb|EGJ23958.1| Internalin-A [Listeria monocytogenes str. Scott A]
gi|340052073|emb|CBY84388.1| internalin A [Listeria monocytogenes]
gi|340052075|emb|CBY84389.1| internalin A [Listeria monocytogenes]
gi|404218009|emb|CBY69373.1| internalin A (LPXTG motif) [Listeria monocytogenes ATCC 19117]
gi|404220870|emb|CBY72233.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012512|emb|CCO63052.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|443428812|gb|AGC92205.1| internalin A [Listeria monocytogenes]
gi|443428814|gb|AGC92206.1| internalin A [Listeria monocytogenes]
gi|443428816|gb|AGC92207.1| internalin A [Listeria monocytogenes]
gi|443428818|gb|AGC92208.1| internalin A [Listeria monocytogenes]
gi|443428826|gb|AGC92212.1| internalin A [Listeria monocytogenes]
gi|443428836|gb|AGC92217.1| internalin A [Listeria monocytogenes]
gi|443428840|gb|AGC92219.1| internalin A [Listeria monocytogenes]
gi|443428852|gb|AGC92225.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359724|gb|ADI77441.1| truncated internalin A [Listeria monocytogenes]
gi|298359728|gb|ADI77443.1| truncated internalin A [Listeria monocytogenes]
gi|298359760|gb|ADI77459.1| truncated internalin A [Listeria monocytogenes]
gi|298359768|gb|ADI77463.1| truncated internalin A [Listeria monocytogenes]
gi|298359778|gb|ADI77468.1| truncated internalin A [Listeria monocytogenes]
gi|298359784|gb|ADI77471.1| truncated internalin A [Listeria monocytogenes]
gi|298359796|gb|ADI77477.1| truncated internalin A [Listeria monocytogenes]
gi|298359800|gb|ADI77479.1| truncated internalin A [Listeria monocytogenes]
gi|298359816|gb|ADI77487.1| truncated internalin A [Listeria monocytogenes]
gi|298359840|gb|ADI77499.1| truncated internalin A [Listeria monocytogenes]
gi|298359850|gb|ADI77504.1| truncated internalin A [Listeria monocytogenes]
gi|298359852|gb|ADI77505.1| truncated internalin A [Listeria monocytogenes]
gi|298359860|gb|ADI77509.1| truncated internalin A [Listeria monocytogenes]
gi|298359916|gb|ADI77537.1| truncated internalin A [Listeria monocytogenes]
gi|298359928|gb|ADI77543.1| truncated internalin A [Listeria monocytogenes]
gi|298359936|gb|ADI77547.1| truncated internalin A [Listeria monocytogenes]
gi|298359962|gb|ADI77560.1| truncated internalin A [Listeria monocytogenes]
gi|298359996|gb|ADI77577.1| truncated internalin A [Listeria monocytogenes]
gi|298360016|gb|ADI77587.1| truncated internalin A [Listeria monocytogenes]
gi|298360018|gb|ADI77588.1| truncated internalin A [Listeria monocytogenes]
gi|298360022|gb|ADI77590.1| truncated internalin A [Listeria monocytogenes]
gi|298360024|gb|ADI77591.1| truncated internalin A [Listeria monocytogenes]
gi|298360046|gb|ADI77602.1| truncated internalin A [Listeria monocytogenes]
gi|298360048|gb|ADI77603.1| truncated internalin A [Listeria monocytogenes]
gi|298360058|gb|ADI77608.1| truncated internalin A [Listeria monocytogenes]
gi|298360062|gb|ADI77610.1| truncated internalin A [Listeria monocytogenes]
gi|298360088|gb|ADI77623.1| truncated internalin A [Listeria monocytogenes]
gi|298360120|gb|ADI77639.1| truncated internalin A [Listeria monocytogenes]
gi|298360152|gb|ADI77655.1| truncated internalin A [Listeria monocytogenes]
gi|298360168|gb|ADI77663.1| truncated internalin A [Listeria monocytogenes]
gi|298360204|gb|ADI77681.1| truncated internalin A [Listeria monocytogenes]
gi|298360210|gb|ADI77684.1| truncated internalin A [Listeria monocytogenes]
gi|298360224|gb|ADI77691.1| truncated internalin A [Listeria monocytogenes]
gi|298360248|gb|ADI77703.1| truncated internalin A [Listeria monocytogenes]
gi|298360250|gb|ADI77704.1| truncated internalin A [Listeria monocytogenes]
gi|298360272|gb|ADI77715.1| truncated internalin A [Listeria monocytogenes]
gi|298360308|gb|ADI77733.1| truncated internalin A [Listeria monocytogenes]
gi|298360340|gb|ADI77749.1| truncated internalin A [Listeria monocytogenes]
gi|298360382|gb|ADI77770.1| truncated internalin A [Listeria monocytogenes]
gi|298360392|gb|ADI77775.1| truncated internalin A [Listeria monocytogenes]
gi|298360408|gb|ADI77783.1| truncated internalin A [Listeria monocytogenes]
gi|298360418|gb|ADI77788.1| truncated internalin A [Listeria monocytogenes]
gi|298360430|gb|ADI77794.1| truncated internalin A [Listeria monocytogenes]
gi|298360438|gb|ADI77798.1| truncated internalin A [Listeria monocytogenes]
gi|298360444|gb|ADI77801.1| truncated internalin A [Listeria monocytogenes]
gi|298360446|gb|ADI77802.1| truncated internalin A [Listeria monocytogenes]
gi|298360476|gb|ADI77817.1| truncated internalin A [Listeria monocytogenes]
gi|298360482|gb|ADI77820.1| truncated internalin A [Listeria monocytogenes]
gi|298360484|gb|ADI77821.1| truncated internalin A [Listeria monocytogenes]
gi|298360486|gb|ADI77822.1| truncated internalin A [Listeria monocytogenes]
gi|298360490|gb|ADI77824.1| truncated internalin A [Listeria monocytogenes]
gi|298360512|gb|ADI77835.1| truncated internalin A [Listeria monocytogenes]
gi|298360526|gb|ADI77842.1| truncated internalin A [Listeria monocytogenes]
gi|298360534|gb|ADI77846.1| truncated internalin A [Listeria monocytogenes]
gi|298360574|gb|ADI77866.1| truncated internalin A [Listeria monocytogenes]
gi|298360584|gb|ADI77871.1| truncated internalin A [Listeria monocytogenes]
gi|298360618|gb|ADI77888.1| truncated internalin A [Listeria monocytogenes]
gi|298360622|gb|ADI77890.1| truncated internalin A [Listeria monocytogenes]
gi|298360626|gb|ADI77892.1| truncated internalin A [Listeria monocytogenes]
gi|298360628|gb|ADI77893.1| truncated internalin A [Listeria monocytogenes]
gi|298360646|gb|ADI77902.1| truncated internalin A [Listeria monocytogenes]
gi|298360650|gb|ADI77904.1| truncated internalin A [Listeria monocytogenes]
gi|298360664|gb|ADI77911.1| truncated internalin A [Listeria monocytogenes]
gi|298360686|gb|ADI77922.1| truncated internalin A [Listeria monocytogenes]
gi|298360702|gb|ADI77930.1| truncated internalin A [Listeria monocytogenes]
gi|298360718|gb|ADI77938.1| truncated internalin A [Listeria monocytogenes]
gi|443428870|gb|AGC92234.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 259
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 260 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 291
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 292 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821291|gb|ACL37772.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNKVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ ++TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNKVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|84043398|ref|XP_951489.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348218|gb|AAQ15545.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|62359994|gb|AAX80418.1| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei]
Length = 1110
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 123/434 (28%), Positives = 192/434 (44%), Gaps = 69/434 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC +L+ L+ ++CIQ++D + LSN T++
Sbjct: 303 SGVPVEDNCLKDLCDCGSLERLNISYCIQLTD-----INPLSNATAIE------------ 345
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 346 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRL 395
Query: 166 ---NCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
NC D+KPLS L L+ L + C KVT SG+ L L +L +L+L V L
Sbjct: 396 SLENCKGFGDVKPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVLDLGRTQVDNNSL 454
Query: 222 DSL-SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD-SCGIGDEGLVNLTGLCNLK 279
+++ ++ L LNL+ C+ + LT LE LN+D SC + G L L+
Sbjct: 455 ENICTSSIPLVSLNLSHCK-KITSISAIASLTALEELNIDNSCNVTS-GWNVFGTLHQLR 512
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITD 338
LS+T++ +RH+S +L ++NL+F I+D + L+ ++ L+ LNLD
Sbjct: 513 VATLSNTRINDENIRHVSECKSLNTLNLAFCKDITD--VTALSKITMLEELNLDCCPNIR 570
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLR--SLEICGGGLTDAGVKHIK 393
G+ L L L + + D A + L N K+L +LE G ++ + +I
Sbjct: 571 KGIETLGKLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSMGFISVKALSNIA 630
Query: 394 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
L L L + + C + S L L LN+ + I +++ K+LRSL L
Sbjct: 631 TLEELVLDHAEEVCCIPS-----FSCLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLS 685
Query: 454 SCKVTANDIKRLQS 467
CK DI L S
Sbjct: 686 HCKWVT-DISVLSS 698
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 175/426 (41%), Gaps = 80/426 (18%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL---DLERCTRIHG--GLVNLKGL-- 154
L+ L L L FR NN I + ++ L +L D + T I G L NLK L
Sbjct: 173 LKRLHMLKRLCFRSNN-IDNNDARHLFNIVTLEELAITDTMQLTNIRGISRLTNLKCLEL 231
Query: 155 ----------------MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI 197
KL L++ CN ITD+ P+S L L+ L + SC +T GI
Sbjct: 232 NSTDIDDSCIGEISACAKLSKLSVSECNNITDA--TPISQLAALEELNLNSCYHIT-KGI 288
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLES 256
L L +L +L+L G PV CL L GSL LN++ C QL+D S T +E
Sbjct: 289 ETLGMLLRLRMLDLSGVPVEDNCLKDLCDCGSLERLNISYCIQLTD--INPLSNATAIEE 346
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSG---------------L 293
LNL+ C G+ + L L+ L + D VG+ G +
Sbjct: 347 LNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGSLVRLSLENCKGFGDV 406
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--------------- 338
+ LS L LE +NL + + L L L+ L+L Q+ +
Sbjct: 407 KPLSNLVTLEELNLHYCDKVTSGMGTLGRLPQLRVLDLGRTQVDNNSLENICTSSIPLVS 466
Query: 339 ---------TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
T ++A+ SLT L L++ + SG LR + + D +
Sbjct: 467 LNLSHCKKITSISAIASLTALEELNIDNSCNVTSGWNVFGTLHQLRVATLSNTRINDENI 526
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+H+ + SL LNL+ ++TD T +S +T L LN+ G+ L L R
Sbjct: 527 RHVSECKSLNTLNLAFCKDITDVT--ALSKITMLEELNLDCCPNIRKGIETLGKLPKARI 584
Query: 450 LTLESC 455
L+++ C
Sbjct: 585 LSMKEC 590
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 195/440 (44%), Gaps = 50/440 (11%)
Query: 37 CLGQYPGVNDKWMDVIA------SQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFN 89
CL + +N K+ D+ S+ SL S++LS VTD + L S L+ L+ N
Sbjct: 651 CLPRLRVLNLKYTDINGDVTKNISESKSLRSLNLSHCKWVTDISV--LSSLSTLEELNVN 708
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
C I G E L L L ++ + I A+ + + LVKL RC ++ V
Sbjct: 709 CCNGIRKG-WESLGKLP-LLRVAILSDTNIAAKDIACLSSCKTLVKLKFFRCEKLSDVTV 766
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
K + LE L ++ C+ L GL +L +L + L L
Sbjct: 767 VYK-IQSLEELIVRSCS-------DGLKGLNDLGTLPRL---------------RFLLLR 803
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
N+ G ++ ++S+ SL L++ R +L+D S +T+LE L+L CG EG
Sbjct: 804 NVRGSDIS---VESIGTSKSLVRLHIEMRKELTD--ITPLSNITSLEELSLRECGDNLEG 858
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK 327
+ L L LK L+L + + +S L + ++ S+NL S ++D S ++ L++L+
Sbjct: 859 VGTLGKLPRLKSLDLGLSDISNSALNDIFLSRSITSLNLASSWKLTDIS--HISNLTALE 916
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTD 386
LNL +G AL+ L L L+L A +T Y+ K+L +L + +TD
Sbjct: 917 ELNLRRCYPITSGWEALSELPRLRVLNLESASVTTRYDGYYISRCKSLVTLNLESCDMTD 976
Query: 387 AG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
A + +IK L L + C + + L L LN+ S I LR ++P
Sbjct: 977 ASCLANIKTLEELHI----GRCKELRRGFSPLFTLPRLRILNLICSLIKDEDLREIQPPH 1032
Query: 446 NLRSLTLESCKVTANDIKRL 465
+ L L C+ NDI L
Sbjct: 1033 TIEELNLSYCE-NLNDITPL 1051
>gi|219821279|gb|ACL37764.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|22347566|gb|AAM95928.1| internalin A precursor [Listeria monocytogenes]
Length = 746
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 90 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 143
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 144 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 202
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 252
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 NISPLAGLTALT 264
>gi|219821360|gb|ACL37818.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|219821267|gb|ACL37756.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|223006806|gb|ACM69360.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|85679236|gb|ABC72034.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|320170955|gb|EFW47854.1| hypothetical protein CAOG_05792 [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 151/374 (40%), Gaps = 33/374 (8%)
Query: 85 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
SLD+N I + GL+ LT LS N IT+ F G+ L L L + T
Sbjct: 74 SLDYNLITSIPA---DAFTGLTALTYLSLYAN-PITSIPAGTFTGVTALTYLSLSSNQIT 129
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY--- 199
I G L L SL + + N IT + LT L L + +++T A+
Sbjct: 130 SIPAGA--FTDLTALRSLFL-YANLITSISANAFTSLTALTYLHLYGNQITSISNAFTGL 186
Query: 200 --------------------LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L LT L+L +T+ D+ + L +L YL LN Q
Sbjct: 187 TALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALTYLYLNSNQ 246
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
++ + F+ LT L L+L+S I T L L L + + S +GL
Sbjct: 247 ITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSISANAFAGL 306
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T L + S I+ S AGL++L L+L + QIT T +T LT+L L +
Sbjct: 307 TALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALTYLSLDSNQ 366
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
IT A L L + +T +L++LT L L N +T L G
Sbjct: 367 ITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSN-PITTLPPGLFKG 425
Query: 420 LTGLVSLNVSNSRI 433
L ++L+ SN +
Sbjct: 426 LPNDLALSYSNPYL 439
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 130/294 (44%), Gaps = 2/294 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + + +T GL LT L+L P+T+ + +
Sbjct: 54 NPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIPAGTFT 113
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ +L YL+L+ Q++ F+ LT L SL L + I T L L L L
Sbjct: 114 GVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYG 173
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
Q+ S +GLT L ++L I+ S L++L L+L + QIT T
Sbjct: 174 NQITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT 232
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LT+L L +IT A L L + +T DL++LT L+ +
Sbjct: 233 GLTALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNS 292
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
N ++T + +GLT L L S++ ITS L L L+L S ++T+
Sbjct: 293 N-SITSISANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITS 345
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 151/359 (42%), Gaps = 8/359 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLES 159
GL+ LT LS N IT+ AF GL L L L T I G G+ L
Sbjct: 64 FTGLTALTFLSLDYN-LITSIPADAFTGLTALTYLSLYANPITSIPAG--TFTGVTALTY 120
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L++ N IT + LT L+SL + + +T L LT L+L G +T+
Sbjct: 121 LSLS-SNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTYLHLYGNQITSI 179
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
++ + L +L L+L ++ F+ LT L L+L S I TGL L
Sbjct: 180 S-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFTGLTALT 238
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L+ Q+ S +GLT L ++L+ I+ + L++L L+ ++ IT
Sbjct: 239 YLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSITSI 298
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
A LT LT+L IT A L L + +T +++LT
Sbjct: 299 SANAFAGLTALTYLFFSSNLITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGVTALT 358
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+L N +T + +GLT L L + ++ITS L L L L+S +T
Sbjct: 359 YLSLDSN-QITSIPADTFTGLTALTYLYLGTNQITSLPSSSFTNLTALTYLVLQSNPIT 416
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 133/315 (42%), Gaps = 15/315 (4%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L++ + N IT +GLT L L + + +T G+ LT L+
Sbjct: 64 FTGLTALTFLSLDY-NLITSIPADAFTGLTALTYLSLYANPITSIPAGTFTGVTALTYLS 122
Query: 211 LEGCPVT---AACLDSLSALGSLF-YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
L +T A L+AL SLF Y NL ++ F+ LT L L+L I
Sbjct: 123 LSSNQITSIPAGAFTDLTALRSLFLYANL----ITSISANAFTSLTALTYLHLYGNQITS 178
Query: 267 --EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
LT L L T + ++ L+ LT L I+ T I + GL+
Sbjct: 179 ISNAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITSIPADTFT---GLT 235
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L L++ QIT T LT LT+L L IT A + L L +
Sbjct: 236 ALTYLYLNSNQITSIPADTFTGLTALTYLSLNSNSITSIAATAFTDLTALTYLSFNSNSI 295
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
T L++LT L S N +T + +GLT L L++ +++ITS +
Sbjct: 296 TSISANAFAGLTALTYLFFSSNL-ITSISANAFAGLTALTYLSLGSNQITSIPAGTFTGV 354
Query: 445 KNLRSLTLESCKVTA 459
L L+L+S ++T+
Sbjct: 355 TALTYLSLDSNQITS 369
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 2/179 (1%)
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L ++ + S +GLT L ++L + I+ GL++L L+L A IT
Sbjct: 49 LYINSNPITSIPTNAFTGLTALTFLSLDYNLITSIPADAFTGLTALTYLSLYANPITSIP 108
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
T +T LT+L L +IT A + LRSL + +T L++LT
Sbjct: 109 AGTFTGVTALTYLSLSSNQITSIPAGAFTDLTALRSLFLYANLITSISANAFTSLTALTY 168
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L+L N +T + +GLT L L++ N+ ITS L L L+L S ++T+
Sbjct: 169 LHLYGN-QITSIS-NAFTGLTALTELHLYNNHITSISANAFTDLTALTELSLISNQITS 225
>gi|112959522|gb|ABI27288.1| truncated internalin A [Listeria monocytogenes]
Length = 538
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 31 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 84
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 85 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 136
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 137 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 181
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 182 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 224
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 225 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 280
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 281 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 327
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 328 ISDLTPLANL----TRITQLGLN 346
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 26 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 78
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 79 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 131
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 132 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 187
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 188 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 241
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 242 ----NISPLAGLTALT 253
>gi|85679220|gb|ABC72026.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLAALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLAALT 319
>gi|119485475|ref|ZP_01619803.1| Rab family protein [Lyngbya sp. PCC 8106]
gi|119457231|gb|EAW38357.1| Rab family protein [Lyngbya sp. PCC 8106]
Length = 457
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 170/337 (50%), Gaps = 35/337 (10%)
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L+ +++LDL R ++I L L L L LN+ N ITD + PLS LTNL L
Sbjct: 94 AQKSLLQVIELDLSR-SKI-SDLSPLITLPHLTRLNLSE-NQITD--LTPLSNLTNLTRL 148
Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+S + + D S I+ L LQ L L E L LS L L L+L+ ++SD
Sbjct: 149 NLSSNLIQDLSPISELPNLQILLLYKNE-----IEVLSPLSNLSGLTELSLDSNKISD-- 201
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
S L NL +L+L I D ++ L NL L L+ +V L +S L NL
Sbjct: 202 ISSLSELNNLTNLSLSENQIQDLSII--ANLENLTQLSLNGNKVNDISL--ISELQNLTK 257
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+NL I D S + LS+LK LNLD+ ++ D ++AL+SLT L L L IT+
Sbjct: 258 LNLKTNQIEDLSSL--SNLSNLKELNLDSNKLID--VSALSSLTQLETLSLSENNITN-- 311
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
L N +NL +L++ ++D IK LSSLT NL+++ NL D + I L+ L
Sbjct: 312 IQPLSNLENLITLQLRSNQISD-----IKALSSLT--NLTEDLNLIDNQISDIKPLSNLK 364
Query: 425 SLNVSNSRITSAGLRHLKPLKNLRSLT---LESCKVT 458
N+S ++ + LKPL +L L L+ K+T
Sbjct: 365 --NLSRVGLSKNQISDLKPLSDLSKLVILYLDENKIT 399
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD N I +S L L+ L +LS NN Q + L NL+ L L R +I
Sbjct: 282 LDSNKLIDVS-----ALSSLTQLETLSLSENNITNIQ---PLSNLENLITLQL-RSNQIS 332
Query: 146 GGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
++K L L +L + N I + SD+KPLS L NL + +S ++++D + L L
Sbjct: 333 ----DIKALSSLTNLT-EDLNLIDNQISDIKPLSNLKNLSRVGLSKNQISD--LKPLSDL 385
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
KL +L L+ +T LS L +L LNL Q+ E S L NL L L
Sbjct: 386 SKLVILYLDENKITEV--QPLSNLTNLTELNLWNNQIK--TIESLSTLDNLTYLGLQENP 441
Query: 264 I 264
I
Sbjct: 442 I 442
>gi|322952092|gb|ADX21045.1| internalin A [Listeria monocytogenes]
gi|322952094|gb|ADX21046.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821294|gb|ACL37774.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|167861906|gb|ACA05652.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821297|gb|ACL37776.1| internalin A [Listeria monocytogenes]
gi|219821303|gb|ACL37780.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|112961640|gb|ABI28446.1| truncated internalin A [Listeria monocytogenes]
gi|112961643|gb|ABI28448.1| truncated internalin A [Listeria monocytogenes]
gi|112961661|gb|ABI28460.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|217965469|ref|YP_002351147.1| internalin-A [Listeria monocytogenes HCC23]
gi|386007166|ref|YP_005925444.1| internalin A [Listeria monocytogenes L99]
gi|386025755|ref|YP_005946531.1| internalin A [Listeria monocytogenes M7]
gi|167861970|gb|ACA05684.1| InlA [Listeria monocytogenes]
gi|167861982|gb|ACA05690.1| InlA [Listeria monocytogenes]
gi|217334739|gb|ACK40533.1| internalin-A [Listeria monocytogenes HCC23]
gi|307569976|emb|CAR83155.1| internalin A [Listeria monocytogenes L99]
gi|336022336|gb|AEH91473.1| internalin A [Listeria monocytogenes M7]
Length = 800
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 183/383 (47%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D + L+SLT N N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSSLASLT------NINWLSAGHNQ 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347544|gb|AAM95917.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 72/332 (21%)
Query: 124 MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
MK G N+ + DL++ T + + +K + LE LN
Sbjct: 1 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN------------------ 42
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + S +++TD I LK L KL + + + A + L+ L +L L L Q
Sbjct: 43 -NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQ 97
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L+ L
Sbjct: 98 ITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANL 150
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 151 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD----- 198
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
L + G L D G + L++LT L+L+ N L +SG
Sbjct: 199 ----------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSG 237
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
LT L L + ++I+ ++ PL L +LT
Sbjct: 238 LTKLTELKLGANQIS-----NISPLAGLTALT 264
>gi|219821369|gb|ACL37824.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|322952096|gb|ADX21047.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821390|gb|ACL37838.1| internalin A [Listeria monocytogenes]
Length = 744
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|219821372|gb|ACL37826.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|219821288|gb|ACL37770.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|322952083|gb|ADX21041.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961610|gb|ABI28426.1| internalin A [Listeria monocytogenes]
gi|112961613|gb|ABI28428.1| internalin A [Listeria monocytogenes]
gi|112961625|gb|ABI28436.1| internalin A [Listeria monocytogenes]
gi|112961628|gb|ABI28438.1| internalin A [Listeria monocytogenes]
gi|112961631|gb|ABI28440.1| internalin A [Listeria monocytogenes]
gi|112961634|gb|ABI28442.1| internalin A [Listeria monocytogenes]
gi|112961670|gb|ABI28466.1| internalin A [Listeria monocytogenes]
gi|112961673|gb|ABI28468.1| internalin A [Listeria monocytogenes]
gi|112961676|gb|ABI28470.1| internalin A [Listeria monocytogenes]
gi|112961688|gb|ABI28478.1| internalin A [Listeria monocytogenes]
gi|112961703|gb|ABI28488.1| internalin A [Listeria monocytogenes]
gi|112961712|gb|ABI28494.1| internalin A [Listeria monocytogenes]
gi|112961715|gb|ABI28496.1| internalin A [Listeria monocytogenes]
gi|112961724|gb|ABI28502.1| internalin A [Listeria monocytogenes]
gi|112961733|gb|ABI28508.1| internalin A [Listeria monocytogenes]
gi|112961736|gb|ABI28510.1| internalin A [Listeria monocytogenes]
gi|112961739|gb|ABI28512.1| internalin A [Listeria monocytogenes]
gi|112961742|gb|ABI28514.1| internalin A [Listeria monocytogenes]
gi|112961745|gb|ABI28516.1| internalin A [Listeria monocytogenes]
gi|112961754|gb|ABI28522.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 205
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 206 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|313485046|gb|ADR52998.1| InlA [Listeria monocytogenes]
Length = 774
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959500|gb|ABI27277.1| internalin A [Listeria monocytogenes]
gi|112959502|gb|ABI27278.1| internalin A [Listeria monocytogenes]
gi|112959510|gb|ABI27282.1| internalin A [Listeria monocytogenes]
gi|112959512|gb|ABI27283.1| internalin A [Listeria monocytogenes]
gi|112959524|gb|ABI27289.1| internalin A [Listeria monocytogenes]
gi|112959530|gb|ABI27292.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 82
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 83 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 136
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 137 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 195
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 245
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 NISPLAGLTALT 257
>gi|22347570|gb|AAM95930.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 183/383 (47%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D + L+SLT N N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSSLASLT------NINWLSAGHNQ 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 72/332 (21%)
Query: 124 MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
MK G N+ + DL++ T + + +K + LE LN
Sbjct: 1 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN------------------ 42
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + S +++TD I LK L KL + + + A + L+ L +L L L Q
Sbjct: 43 -NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQ 97
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L+ L
Sbjct: 98 ITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANL 150
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
T LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 151 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD----- 198
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
L + G L D G + L++LT L+L+ N L +SG
Sbjct: 199 ----------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSG 237
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
LT L L + ++I+ ++ PL L +LT
Sbjct: 238 LTKLTELKLGANQIS-----NISPLAGLTALT 264
>gi|71754651|ref|XP_828240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833626|gb|EAN79128.1| hypothetical protein Tb11.53.0001 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1399
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 174/396 (43%), Gaps = 17/396 (4%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC L+ L+ + CIQ++D + L + + L+ R + IT QG+
Sbjct: 307 SGVSVEDNFLKDLCDCGPLERLNLSHCIQLTD--INPLSNATAIQELNLNRCHRIT-QGI 363
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L L L ++ L ++ L L+I+ NC DM LS L+
Sbjct: 364 SVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSIE--NCAGFGDMTLLSSFVALEE 421
Query: 185 LQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
L I C+ + SG+ L L L +LN++ +++ + A SL L + LSD
Sbjct: 422 LNIQKCADII-SGVGCLGTLPYLRVLNIKEAHISSIGFTGIGASKSLLQLTIESTTGLSD 480
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
E + + LE L+L C D G+ L L LK L+LS T S LR L +
Sbjct: 481 --VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTI 538
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
S+NLS S+ ++ L +L LNL + G AL L L L ITD
Sbjct: 539 VSLNLSHCW-KVTSVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITD 597
Query: 363 SGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
++ K L +L++ C + +I L L L NC+ K L ++ L
Sbjct: 598 RDISHFSKCKELVTLDLSFCDELFDITSLSNITTLEDLNL----DNCSKIRKGLSVLGEL 653
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L LNV +T++ + L K+ L L++CK
Sbjct: 654 PRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCK 689
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 178/403 (44%), Gaps = 18/403 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G + D+G+ L + L+ LD + SD LRGL + T +S +
Sbjct: 489 TLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDS----LRGLCVSQTIVSLNLS 544
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C RI+ G L+ L +L + I ITD D+
Sbjct: 545 HCWKVTSVFHISALETLNELNLSDCIRINAGWEALEKLQQLH-VAILSNTHITDRDISHF 603
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S L +L +S C ++ D I L + L LNL+ C L L L L LN+
Sbjct: 604 SKCKELVTLDLSFCDELFD--ITSLSNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNV 661
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L++ + L LD+C G+ D + L+ L LK L L +SG+
Sbjct: 662 KGVHLTNSVIGSLGNGKSFVKLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIG 719
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTGLTH 352
L L L ++L +T I + SL + SS L SLNL ++IT ++A+ SL L
Sbjct: 720 TLGRLLQLRVLDLGWTKIDNNSLEDICACSSPLVSLNLSHCKEIT--SISAIASLNALEK 777
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ SG LR + + D ++HI + SL LNL+ ++TD
Sbjct: 778 LNIDNCCHVTSGWNVFGTLHQLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITDI 837
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
T +S +T L LN+ G+ L L LR L + C
Sbjct: 838 T--ALSNITMLRELNIDWCFNIEKGVEALGKLPKLRELDAKKC 878
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 180/404 (44%), Gaps = 43/404 (10%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
+NL+ L+FN+ I D +E + + L+ LS N++T + + L L +L+L
Sbjct: 228 TNLKCLEFNY-TSIDDSCIEEICECATLSKLSVSECNSLT--DVTPISQLAALEELNLSN 284
Query: 141 CTRIHGG------------------------LVNLKGLMKLESLNIKWCNCITDSDMKPL 176
C I G L +L LE LN+ +CI +D+ PL
Sbjct: 285 CYHITKGIGALVRLLRLRALDLSGVSVEDNFLKDLCDCGPLERLNLS--HCIQLTDINPL 342
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S T ++ L ++ C ++T GI+ + L KL +L+++ ++ + LDS+ SL L++
Sbjct: 343 SNATAIQELNLNRCHRIT-QGISVVWELPKLRVLHMKDMHLSESSLDSVGTSESLVKLSI 401
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
C D S LE LN+ C G+ L L L+ L + + + S G
Sbjct: 402 ENCAGFGD-MTLLSSFVALEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSIGFTG 460
Query: 296 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+ +L + + S TG+SD + LA + +L+ L+L D G+ L +L L LD
Sbjct: 461 IGASKSLLQLTIESTTGLSD--VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLD 518
Query: 355 LFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
L G T++ + LR + + SL + V HI L +L LNLS +C +
Sbjct: 519 LSG---TNTDSDSLRGLCVSQTIVSLNL-SHCWKVTSVFHISALETLNELNLS-DCIRIN 573
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
E + L L +SN+ IT + H K L +L L C
Sbjct: 574 AGWEALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFC 617
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 126/487 (25%), Positives = 198/487 (40%), Gaps = 99/487 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
C + +LS+L +L LN+N C G E F LT L L + +EG+ L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+G NL+ LEL S + ++ + +LE + + + L K+ L L+ L L
Sbjct: 1033 SGCKNLRNLELYCCG-DVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVLVLR 1091
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG--LTDAG- 388
Q T L++L L L + G + D + N L+ L+I G L D G
Sbjct: 1092 KLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLKELKIAHGDRLLNDVGD 1149
Query: 389 --------------------------------------------VKHIKDLSSLTLLNLS 404
+ HI +L++L LNLS
Sbjct: 1150 LGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPDIYHISNLTALEELNLS 1209
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT----A 459
C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1210 -GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASCL 1268
Query: 460 NDIKRLQ 466
DIK L+
Sbjct: 1269 ADIKTLE 1275
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 185/405 (45%), Gaps = 42/405 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCGDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-----------------LSDDGCEK---FSR 250
++ C L + L L L L + Q L+ +G E+
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 251 LTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
++N+ +L GD L+N G L L L LS +G++ + + +L+S++
Sbjct: 1126 ISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLD 1184
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GA 365
++ + + ++ L++L+ LNL +G ALT+L L L+L R+T S G
Sbjct: 1185 ITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
Y+ K+L +L + +TDA + D+ +L L++ + C + + L L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLPQLRI 1300
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 467
LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1301 LNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 183/410 (44%), Gaps = 36/410 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + VT+ G+ L C NL++L+ C +S+ +E + + +L L+ + + I +G
Sbjct: 1019 LSVTWVTNEGIRLLSGCKNLRNLELYCCGDVSN--IEPINNIKSLEELTIQNCHNIN-EG 1075
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L L + + L +L L L I+ + D +K +S + LK
Sbjct: 1076 LLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLK 1133
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD 242
L+I+ + + L L L +L L + C +S+ + SL L++ +L D
Sbjct: 1134 ELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPD 1193
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN 301
S LT LE LNL C G LT L L+ L LS T+V +S G ++S +
Sbjct: 1194 --IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKS 1251
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L ++NL ++D S LA + +L+ L++ + G +AL +L L L+L + IT
Sbjct: 1252 LITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGL 420
D ++LR +++ I+DL NLS L D T + I +
Sbjct: 1310 D---------EDLREIQLS---------HTIEDL------NLSYCKELNDITPVRRIKSI 1345
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
+ S R G R L L L + +++ V+ + K L+ R +
Sbjct: 1346 KKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
>gi|219821312|gb|ACL37786.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 183/383 (47%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D + L+SLT N N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD-----VSSLASLT------NINWLSAGHNQ 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 145/317 (45%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|219821282|gb|ACL37766.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISSLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 80/334 (23%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-------------------- 196
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 -ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 250
Query: 435 S----AG-------------LRHLKPLKNLRSLT 451
+ AG L + P+ NL++LT
Sbjct: 251 NISSLAGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|313485056|gb|ADR53002.1| InlA [Listeria monocytogenes]
Length = 789
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|87308228|ref|ZP_01090370.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
gi|87289310|gb|EAQ81202.1| hypothetical protein DSM3645_21562 [Blastopirellula marina DSM
3645]
Length = 438
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 13/323 (4%)
Query: 96 DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---HGGLVNLK 152
D G+ + LS L +L + A + +F GL L KL+ T + + L+
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASS----DSFFGLEELRKLEQVEFTDLVINQAVIGGLR 159
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L NI+ + S LK+L I K + I + + L L L
Sbjct: 160 GLPNLNQFNIRNSELALPWALDERS-FPQLKTLLIDGGKADAALIGEVCSIPTLQQLQL- 217
Query: 213 GCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
CPV ++ L+ L +L L+L R L D+ C ++ ++ LN+ GIG++ L
Sbjct: 218 SCPVGQFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFL 277
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ NL+ L+L+ +++ GL +LS L+ LES+ LS T IS + + + L SL+ L
Sbjct: 278 STIGDFPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLREL 337
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L ++ + + L L +DL + + LR LR + + + A +
Sbjct: 338 HLHNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMNTPIGAADL 397
Query: 390 KHIKDLSSLTLLNLSQNCNLTDK 412
++K L + + + + NLT++
Sbjct: 398 PYLKQLYHIDEIYV-EETNLTNE 419
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 1/202 (0%)
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + A L NLV L L R + +K++ LN+ I + + +
Sbjct: 224 FTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTG-IGNQFLSTIGD 282
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
NL+ L ++ SK+TD G+AYL L +L L L +++A S L SL L+L+
Sbjct: 283 FPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNT 342
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+L ++L NLE ++L + E L+ L L L+ + L +T +G++ L +L
Sbjct: 343 KLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVVLMNTPIGAADLPYLKQ 402
Query: 299 LTNLESINLSFTGISDGSLRKL 320
L +++ I + T +++ KL
Sbjct: 403 LYHIDEIYVEETNLTNEEQIKL 424
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 34/338 (10%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D ++ ++ L+ LK+L I+ +K + L+ L+KL + + A + L L +
Sbjct: 104 DKGIRVVTTLSPLKALLIAKTKASSDSFFGLEELRKLEQVEFTDLVINQAVIGGLRGLPN 163
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELS--DT 286
L N+ +L+ L++L +D G D L+ + + L+ L+LS
Sbjct: 164 LNQFNIRNSELALPWALDERSFPQLKTLLIDG-GKADAALIGEVCSIPTLQQLQLSCPVG 222
Query: 287 QVGSSGLRHLSGLTNL------------------------ESINLSFTGISDGSLRKLAG 322
Q + R L+ L NL + +N+ TGI + L +
Sbjct: 223 QFTINDFRRLADLPNLVDLSLVRSSLPDESCPLATQQLKIQKLNVGQTGIGNQFLSTIGD 282
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+L+ L+L +ITD GLA L+ L+ L L L I+ + A + ++LR L +
Sbjct: 283 FPNLRELDLTGSKITDGGLAYLSELSQLESLTLSETNISSAAAKHFSQLQSLRELHLHNT 342
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL--ISGLTGLVSLNVSNSRITSAGLRH 440
L + I L +L ++LS++ ++ LEL + L G+V + N+ I +A L +
Sbjct: 343 KLDGQAMVDIAKLKNLEWIDLSKSNVQGEQLLELRKLPKLRGVV---LMNTPIGAADLPY 399
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478
LK L ++ + +E +T + +L L ++RP
Sbjct: 400 LKQLYHIDEIYVEETNLTNEEQIKLHEA-LAKARNYRP 436
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 27 AFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 86
A + +Q L +GQ G+ ++++ I +L +DL+GS +TD GL +L + S L+SL
Sbjct: 256 ATQQLKIQKLNVGQT-GIGNQFLSTIGD-FPNLRELDLTGSKITDGGLAYLSELSQLESL 313
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
+ IS +H L +L L N + Q M A L NL +DL +
Sbjct: 314 TLSET-NISSAAAKHFSQLQSLRELHL-HNTKLDGQAMVDIAKLKNLEWIDLSKSNVQGE 371
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
L+ L+ L KL + + I +D+ L L ++ + + + +T+
Sbjct: 372 QLLELRKLPKLRGV-VLMNTPIGAADLPYLKQLYHIDEIYVEETNLTNE 419
>gi|325108218|ref|YP_004269286.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
gi|324968486|gb|ADY59264.1| hypothetical protein Plabr_1653 [Planctomyces brasiliensis DSM
5305]
Length = 1046
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
++ W NC D D+ LS +L+ + I+ +TD L Q+L + L G +T A
Sbjct: 312 DLDWMNC-NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEAS 370
Query: 221 LDSLSALGSLFYLNLNRCQ----------LSDDGCEKFSRLTNLESLN---LDSCGIGDE 267
L LS RCQ L E FS+L E+L L + D+
Sbjct: 371 LRHLS-----------RCQAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDD 419
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
L L+ L +L+ L Q+ +GL+ L+ + L+ I L +D ++ L L SL+
Sbjct: 420 NLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIALLQPLKSLR 479
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
++L IT+ GLA L ++T L +DL G IT+ G A L +L+ LE+ G
Sbjct: 480 RIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQRLELRG 533
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 38/240 (15%)
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
+DD S +L + + S I D L L+ + L+ Q+ + LRHLS
Sbjct: 319 NDDDVALLSDCPSLRRVYIASDAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLS-RC 377
Query: 301 NLESINLSFTG---ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
E I L+ G I + +LA +L+ L L +TD L AL+SLT
Sbjct: 378 QAEIIELTGRGLKHIPNEIFSQLAKSETLRDLRLWDTALTDDNLQALSSLT--------- 428
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+LR L G LT AG+K + + L + L N TD+T+ L+
Sbjct: 429 ---------------SLRVLCADGHQLTPAGLKQLASMPFLQEIRLP-GANWTDETIALL 472
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA---------NDIKRLQSR 468
L L +++++S IT+AGL L + +L + L+ +T ND++RL+ R
Sbjct: 473 QPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQRLELR 532
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 56/245 (22%)
Query: 50 DVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
D I + + LL+ + L+G+ +T++ L HL C I+++ GL+H+
Sbjct: 340 DAITDRAAELLADTQQLRHIRLTGNQLTEASLRHLSRCQAE-------IIELTGRGLKHI 392
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
N I +Q L K + R R+
Sbjct: 393 -------------PNEIFSQ----------LAKSETLRDLRL------------------ 411
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
W +TD +++ LS LT+L+ L ++T +G+ L + L + L G T +
Sbjct: 412 -WDTALTDDNLQALSSLTSLRVLCADGHQLTPAGLKQLASMPFLQEIRLPGANWTDETIA 470
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L L SL ++L +++ G + + +T+LE ++L I ++G+ L L +L+ LE
Sbjct: 471 LLQPLKSLRRIDLADSAITNAGLAELANITSLEWIDLQGTDITNQGVAALAALNDLQRLE 530
Query: 283 LSDTQ 287
L T+
Sbjct: 531 LRGTR 535
>gi|313485044|gb|ADR52997.1| InlA [Listeria monocytogenes]
Length = 771
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|294358401|gb|ADE73853.1| InlA [Listeria monocytogenes]
Length = 800
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L GL NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LAGLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 46/175 (26%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ I D+S+L
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSN--------TISDISAL--------- 182
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
SGLT L L+ N + LKPL NL TLE +++N +
Sbjct: 183 ----------SGLTSLQQLSFGNQ------VTDLKPLANLT--TLERLDISSNKV 219
>gi|85679230|gb|ABC72031.1| InlA [Listeria monocytogenes]
Length = 794
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|112961700|gb|ABI28486.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 205
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 206 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|219821273|gb|ACL37760.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RI+ GL
Sbjct: 337 ISDLTPLANL----TRISELGLN 355
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 142/317 (44%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDIVMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D + L LT L L L G ++ D G L + NL
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 217
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L++ I +L+ L SGLT L L + ++I+
Sbjct: 218 TDLDLANN--------QISNLAPL-------------------SGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLAGLTALT 262
>gi|15896519|ref|NP_349868.1| ChW repeat-containing protein [Clostridium acetobutylicum ATCC 824]
gi|337738478|ref|YP_004637925.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
gi|384459988|ref|YP_005672408.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|15026350|gb|AAK81208.1|AE007823_2 Possible surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum ATCC 824]
gi|325510677|gb|ADZ22313.1| putative surface protein, responsible for cell interaction;
contains cell adhesion domain and ChW-repeats
[Clostridium acetobutylicum EA 2018]
gi|336291611|gb|AEI32745.1| ChW repeat-containing protein [Clostridium acetobutylicum DSM 1731]
Length = 874
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 170/333 (51%), Gaps = 34/333 (10%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204
+G + +L + KL +L I N TD D+ P+ LTNL L I SK+++ +
Sbjct: 540 YGNVTDLTPISKLSNLKILSLNGDTDIDISPIGNLTNLNQLDIGESKISNINVLNKLNNL 599
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNL---NRCQLSDDGCEKFSRLTNLESLNLDS 261
+L+ + S LGSL L L + C SD +++ NL ++L+
Sbjct: 600 NYLILDKN------TSIKDFSPLGSLTNLTLLQASYCNFSD--LTPLAKMKNLSRVSLNY 651
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
I + L NL L LS ++ S + ++ LTNLESI+LS+ +++ + LA
Sbjct: 652 NNI--TSIEPLKSSTNLVDLVLSGNKI--SDITPVANLTNLESISLSYNQVNN--ISSLA 705
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 380
L+ LKSL LD TG++ ++SL+GLT+L+ G + + L+N NL +L+I
Sbjct: 706 KLTKLKSLMLD-----HTGISDISSLSGLTNLNYLGVQDNNIEDITSLKNLTNLANLKIS 760
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+++ V I +L++LTLL+++ N + I T L+SL++ +++++ +
Sbjct: 761 QNKISN--VDAIGNLTNLTLLDMNNN---QISNINAIKNSTKLISLSMHHNKVSD--ISA 813
Query: 441 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L L NL SL L + + ND+ L +DL +L
Sbjct: 814 LSKLTNLESLNLGNNPI--NDVTPL--KDLSHL 842
>gi|112959444|gb|ABI27249.1| truncated internalin A [Listeria monocytogenes]
gi|112959490|gb|ABI27272.1| truncated internalin A [Listeria monocytogenes]
Length = 542
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTGLKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|219821333|gb|ACL37800.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DINPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--INPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|422808574|ref|ZP_16856985.1| Internalin A [Listeria monocytogenes FSL J1-208]
gi|378752188|gb|EHY62773.1| Internalin A [Listeria monocytogenes FSL J1-208]
Length = 802
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298359764|gb|ADI77461.1| truncated internalin A [Listeria monocytogenes]
gi|298359862|gb|ADI77510.1| truncated internalin A [Listeria monocytogenes]
gi|298360070|gb|ADI77614.1| truncated internalin A [Listeria monocytogenes]
gi|298360108|gb|ADI77633.1| truncated internalin A [Listeria monocytogenes]
gi|298360174|gb|ADI77666.1| truncated internalin A [Listeria monocytogenes]
gi|298360196|gb|ADI77677.1| truncated internalin A [Listeria monocytogenes]
gi|298360268|gb|ADI77713.1| truncated internalin A [Listeria monocytogenes]
gi|298360290|gb|ADI77724.1| truncated internalin A [Listeria monocytogenes]
gi|298360536|gb|ADI77847.1| truncated internalin A [Listeria monocytogenes]
gi|298360608|gb|ADI77883.1| truncated internalin A [Listeria monocytogenes]
gi|298360658|gb|ADI77908.1| truncated internalin A [Listeria monocytogenes]
gi|298360684|gb|ADI77921.1| truncated internalin A [Listeria monocytogenes]
Length = 605
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 259
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 260 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 291
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 292 -SGLTKLTGLKLGANQIS-----NISPLAGLTALT 320
>gi|112959468|gb|ABI27261.1| internalin A [Listeria monocytogenes]
Length = 730
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 28 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 81
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 82 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 133
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 134 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 178
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 179 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 221
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 222 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 277
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 278 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 324
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 325 ISDLTPLANL----TRITQLGLN 343
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 23 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 75
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 76 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 128
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 129 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 184
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 185 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 238
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 239 ----NISPLAGLTALT 250
>gi|406939756|gb|EKD72712.1| hypothetical protein ACD_45C00605G0001 [uncultured bacterium]
Length = 541
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
I+ L+ K+ LNLE + LS +L L+L+ Q+ D G FS+ T L
Sbjct: 57 ISLLQQYPKVDTLNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTE 116
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L + + IG EG L+ NL+ L + D +GSSG L+ + N++ I+L I D
Sbjct: 117 LYIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDDG 176
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ + +SLKS+ L+ ITD G LT+ L + L I D GA L K + S
Sbjct: 177 IIPYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYITS 236
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L++ ++ G+K ++ ++T L + N
Sbjct: 237 LDVSNNHISTIGIKALQQNKNITELETTGN 266
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 37/358 (10%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ +SL S+ L+ + +TD G L + +L+ + + +I D G L +TSL
Sbjct: 181 SKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLS-SNEIGDEGAISLAYNKYITSLDV 239
Query: 114 RRNNAITAQGMKAFAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
NN I+ G+KA N+ +L+ L++ + ++ + + +E +I N +
Sbjct: 240 S-NNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRLNLYS 298
Query: 170 ----DSDMKPLSGLTNLKS----LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
D+D+ ++ NL LQIS +K+ +G L + L LN+ + +
Sbjct: 299 CELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNLLDSRSA 358
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
++ S +L L+L L ++G + + L+ LN+ +GD+G LT + +LK L
Sbjct: 359 EAFSKNTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKNYVGDDGFAALTKMKSLKIL 418
Query: 282 ELSDTQVGSSGLR--------HLSGLTNLESI-------NLSFT--GISDGSLRK----- 319
D Q+ G+ +LSG N+ SI N S T G+SD L
Sbjct: 419 IADDNQISDLGVSSPFLFHELYLSG-NNISSIGADMISHNPSLTDLGLSDNYLGDDGATI 477
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA S+ SLNL+ +I TG A+ L L++ I G A L N K L L
Sbjct: 478 LARNKSIISLNLNYNEIGSTGAIAIAQNIILRDLNIAHNHICSIGLAALYNNKTLEKL 535
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 195/448 (43%), Gaps = 57/448 (12%)
Query: 38 LGQYPGVN--DKWMDVIASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDF 88
L QYP V+ + M+ I +G++LLS +DLS + + D+G + L L
Sbjct: 60 LQQYPKVDTLNLEMNHIGPKGAALLSKNKTLSRLDLSNNQIGDAGASAFSKNTTLTEL-- 117
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
I + G E +GLS +L +N I + G + A + N+ ++ L
Sbjct: 118 --YIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLANMRNIQRISLMNNDIDDD 175
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G++ L+S+ + N ITD K L+ +LK + +S +++ D G L + +
Sbjct: 176 GIIPYSKNTSLKSIALNK-NHITDKGAKVLTNSISLKEIWLSSNEIGDEGAISLAYNKYI 234
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYL----NLNRCQ-LSDDGCEKFSRLT----NLESL 257
T L++ ++ + +L ++ L NL++ L + +K ++ ++ L
Sbjct: 235 TSLDVSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFNDIDKRVNVSVEDPSIVRL 294
Query: 258 NLDSCGIGDEGLVNLTGLCNLKC----LELSDTQVGSSGLRHLSGLTNLESINLS----- 308
NL SC + D + +T NL L++S+ ++GS+G L L+++N+S
Sbjct: 295 NLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILLGQNKTLKTLNISNNLLD 354
Query: 309 ------FTG-------------ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
F+ + + + LA + L LN+ + D G AALT +
Sbjct: 355 SRSAEAFSKNTTLIRLDLEGNHLGENGAKILANNNVLDVLNISKNYVGDDGFAALTKMKS 414
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L +I+D G + F L + G ++ G I SLT L LS N L
Sbjct: 415 LKILIADDNQISDLGVSSPFLF---HELYLSGNNISSIGADMISHNPSLTDLGLSDNY-L 470
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAG 437
D +++ ++SLN++ + I S G
Sbjct: 471 GDDGATILARNKSIISLNLNYNEIGSTG 498
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 128/287 (44%), Gaps = 14/287 (4%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D+ S T L L I + + G L + L +L + + ++ SL+
Sbjct: 98 NQIGDAGASAFSKNTTLTELYIIANAIGPEGAKGLSQNKNLRILLIGDNHIGSSGAISLA 157
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ ++ ++L + DDG +S+ T+L+S+ L+ I D+G LT +LK + LS
Sbjct: 158 NMRNIQRISLMNNDIDDDGIIPYSKNTSLKSIALNKNHITDKGAKVLTNSISLKEIWLSS 217
Query: 286 TQVGSSG---LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQI----- 336
++G G L + +T+L+ N + I +L++ ++ L++ NLD
Sbjct: 218 NEIGDEGAISLAYNKYITSLDVSNNHISTIGIKALQQNKNITELETTGNLDKPPSLCFND 277
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS----LEICGGGLTDAGVKHI 392
D + + L+L+ + D+ +++ ++ NL L+I + G +
Sbjct: 278 IDKRVNVSVEDPSIVRLNLYSCELRDADISFVTSYLNLHPYINFLQISNNKIGSNGAILL 337
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+L LN+S N L ++ E S T L+ L++ + + G +
Sbjct: 338 GQNKTLKTLNISNNL-LDSRSAEAFSKNTTLIRLDLEGNHLGENGAK 383
>gi|112959536|gb|ABI27295.1| internalin A [Listeria monocytogenes]
gi|112959546|gb|ABI27300.1| internalin A [Listeria monocytogenes]
Length = 734
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 83 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 136
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 137 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 195
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 245
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 NISPLAGLTALT 257
>gi|47092503|ref|ZP_00230292.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|417314487|ref|ZP_12101186.1| internalin A [Listeria monocytogenes J1816]
gi|47019095|gb|EAL09839.1| internalin A [Listeria monocytogenes str. 4b H7858]
gi|130774783|gb|ABO32406.1| InlA [Listeria monocytogenes]
gi|130774787|gb|ABO32408.1| InlA [Listeria monocytogenes]
gi|167861878|gb|ACA05638.1| InlA [Listeria monocytogenes]
gi|167861926|gb|ACA05662.1| InlA [Listeria monocytogenes]
gi|194239406|emb|CAQ76843.1| internalin A [Listeria monocytogenes]
gi|223006800|gb|ACM69357.1| internalin A [Listeria monocytogenes]
gi|223006808|gb|ACM69361.1| internalin A [Listeria monocytogenes]
gi|294358399|gb|ADE73852.1| InlA [Listeria monocytogenes]
gi|298359958|gb|ADI77558.1| internalin A [Listeria monocytogenes]
gi|298359988|gb|ADI77573.1| internalin A [Listeria monocytogenes]
gi|298360010|gb|ADI77584.1| internalin A [Listeria monocytogenes]
gi|298360208|gb|ADI77683.1| internalin A [Listeria monocytogenes]
gi|298360370|gb|ADI77764.1| internalin A [Listeria monocytogenes]
gi|298360402|gb|ADI77780.1| internalin A [Listeria monocytogenes]
gi|298360472|gb|ADI77815.1| internalin A [Listeria monocytogenes]
gi|298360544|gb|ADI77851.1| internalin A [Listeria monocytogenes]
gi|298360592|gb|ADI77875.1| internalin A [Listeria monocytogenes]
gi|328467733|gb|EGF38785.1| internalin A [Listeria monocytogenes J1816]
gi|443428820|gb|AGC92209.1| truncated internalin A [Listeria monocytogenes]
gi|443428844|gb|AGC92221.1| truncated internalin A [Listeria monocytogenes]
gi|443428846|gb|AGC92222.1| truncated internalin A [Listeria monocytogenes]
gi|443428850|gb|AGC92224.1| truncated internalin A [Listeria monocytogenes]
gi|443428854|gb|AGC92226.1| truncated internalin A [Listeria monocytogenes]
gi|443428856|gb|AGC92227.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|167862012|gb|ACA05705.1| InlA [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961667|gb|ABI28464.1| truncated internalin A [Listeria monocytogenes]
Length = 556
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--SFGNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTGLKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTGLKLGANQIS-----NISPLAGLTALT 271
>gi|443428800|gb|AGC92199.1| truncated internalin A [Listeria monocytogenes]
gi|443428802|gb|AGC92200.1| truncated internalin A [Listeria monocytogenes]
gi|443428806|gb|AGC92202.1| truncated internalin A [Listeria monocytogenes]
gi|443428824|gb|AGC92211.1| truncated internalin A [Listeria monocytogenes]
gi|443428830|gb|AGC92214.1| truncated internalin A [Listeria monocytogenes]
gi|443428832|gb|AGC92215.1| truncated internalin A [Listeria monocytogenes]
gi|443428834|gb|AGC92216.1| truncated internalin A [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|150371888|dbj|BAF65733.1| internalin A [Listeria monocytogenes]
gi|150371890|dbj|BAF65734.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|168704644|ref|ZP_02736921.1| hypothetical protein GobsU_34225 [Gemmata obscuriglobus UQM 2246]
Length = 952
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 161/321 (50%), Gaps = 31/321 (9%)
Query: 46 DKWMDVIASQ---GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
DK ++++ +Q G SL + LS +D+ D L L + L+ LD + C +SD L
Sbjct: 619 DKRLEMLWTQIRRGLSLRRLVLSKTDIAD--LSPLAPLTALEELDLSGCAGVSD-----L 671
Query: 103 RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L+NLT+L F + + A L L LDL C + L L L LE LN
Sbjct: 672 SPLANLTALRFLDLSGCAGGADLSPLANLTALRFLDLSGCAGV-SDLAPLANLTALEGLN 730
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
++ C + SD+ PL+ LT L+ L +S C+ D S +A L GL+ LNL GC +
Sbjct: 731 LRGCAGV--SDLSPLANLTGLRHLNLSGCAGWADLSPLANLTGLRH---LNLNGC-TGVS 784
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNL 278
L L+ L +L L+L+ C D + LT LE L+L C G+ D L L L
Sbjct: 785 DLSPLAPLTALEELDLSGCAGVSD-LSPLANLTALEGLDLSGCAGVSD--LSPLAPHTAL 841
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQI 336
+ L+LS G S L L+ T L ++LS G+SD L LA L++L+ L+L +
Sbjct: 842 RFLDLSGC-AGVSCLSPLAPHTALRFLDLSGCAGVSD--LSPLANLTALEDLDLSGCAGV 898
Query: 337 TDTGLAALTSLTGLTHLDLFG 357
+D L+ L +LT L LDL G
Sbjct: 899 SD--LSPLANLTALEGLDLSG 917
>gi|298359932|gb|ADI77545.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290986246|ref|XP_002675835.1| predicted protein [Naegleria gruberi]
gi|284089434|gb|EFC43091.1| predicted protein [Naegleria gruberi]
Length = 820
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 2/198 (1%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
L L CP + ++ L + L L+ + D+G + S + L SL++ IG EG
Sbjct: 606 LTLNKCP-SNELINFLKKMKQLTLLDF-IYNIGDEGAKLISEMKQLTSLDISENNIGVEG 663
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
++ + L L + ++G G++++S + L S+++S+ I + ++ + L S
Sbjct: 664 AKYISEMKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTS 723
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L++ I G ++ + LT LD+ +I D GA Y+ K L SL I + G
Sbjct: 724 LDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEG 783
Query: 389 VKHIKDLSSLTLLNLSQN 406
VK+I ++ LT L++S N
Sbjct: 784 VKYISEMKQLTSLDISYN 801
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 105/211 (49%), Gaps = 13/211 (6%)
Query: 197 IAYLKGLQKLTLLNL------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
I +LK +++LTLL+ EG + +S + L L+++ + +G + S
Sbjct: 617 INFLKKMKQLTLLDFIYNIGDEGAKL-------ISEMKQLTSLDISENNIGVEGAKYISE 669
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L SLN+ IG EG+ ++ + L L++S ++G G +++S + L S+++S
Sbjct: 670 MKQLTSLNICRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYISEMKQLTSLDISEN 729
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I + ++ + L SL+++ +I D G ++ + LT L++ I G Y+
Sbjct: 730 NIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISE 789
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
K L SL+I + G K++ ++ + T+
Sbjct: 790 MKQLTSLDISYNKIGVEGAKYLSEMKTKTIY 820
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 91/181 (50%)
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+ D G + +++LT L++ + +S + L LN+ R ++ +G + S +
Sbjct: 635 IGDEGAKLISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLNICRNEIGVEGVKYISEM 694
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L SL++ IG EG ++ + L L++S+ +G G +++S + L S+++++
Sbjct: 695 KQLTSLDISYNKIGVEGAKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNK 754
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I D + ++ + L SLN+ +I G+ ++ + LT LD+ +I GA YL
Sbjct: 755 IGDEGAKYISKMKQLTSLNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Query: 372 K 372
K
Sbjct: 815 K 815
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 28/223 (12%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LK L LDF + I D G + + + LTSL NN I +G K + + L L
Sbjct: 620 LKKMKQLTLLDFIY--NIGDEGAKLISEMKQLTSLDISENN-IGVEGAKYISEMKQLTSL 676
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
++ R N I +K +S + L SL IS +K+ G
Sbjct: 677 NICR-------------------------NEIGVEGVKYISEMKQLTSLDISYNKIGVEG 711
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
Y+ +++LT L++ + +S + L L++N ++ D+G + S++ L S
Sbjct: 712 AKYISEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYNKIGDEGAKYISKMKQLTS 771
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
LN+ IG EG+ ++ + L L++S ++G G ++LS +
Sbjct: 772 LNIRRNEIGVEGVKYISEMKQLTSLDISYNKIGVEGAKYLSEM 814
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+S +++ G ++ + L SLD N+ +I D G +++ + LTSL+
Sbjct: 716 SEMKQLTSLDISENNIGVEGAKYISEMKQLTSLDINYN-KIGDEGAKYISKMKQLTSLNI 774
Query: 114 RRNNAITAQGMKAFAGLINLVKLDL 138
RR N I +G+K + + L LD+
Sbjct: 775 RR-NEIGVEGVKYISEMKQLTSLDI 798
>gi|223698871|gb|ACN19154.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|298360200|gb|ADI77679.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961772|gb|ABI28534.1| internalin A [Listeria monocytogenes]
Length = 748
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112961694|gb|ABI28482.1| internalin A [Listeria monocytogenes]
gi|112961706|gb|ABI28490.1| internalin A [Listeria monocytogenes]
gi|112961763|gb|ABI28528.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 205
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 206 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|452824610|gb|EME31612.1| F-box and leucine-rich repeat protein GRR1 [Galdieria sulphuraria]
Length = 740
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 179/368 (48%), Gaps = 52/368 (14%)
Query: 58 SLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
SL +DLSG S +++ G+ L +L++L + C + + L ++R + L SLS
Sbjct: 121 SLKLLDLSGCSQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACC 180
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKP 175
+ I+ G++ L L L+L C+RI L+++ L L+ L ++ C + + ++
Sbjct: 181 DKISGSGLEQLFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEH 240
Query: 176 LSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
+ LT+L++L++ C K+ D+G+ YL+ ++ L L G ++A D +++L +F
Sbjct: 241 IGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLSGTCISA---DGIASLADIF--- 294
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ +LE+L+L C NL G +Q S LR
Sbjct: 295 ----------------MPHLENLHLTRCS-------NLVG-----------SQF-SVSLR 319
Query: 295 HLSGLTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNL-DARQITDTGLAALTSLTGLT 351
LS N++ + L + + D L+ ++ L+SLNL D R +TD G++ L L+ L+
Sbjct: 320 KLS--KNMKRLQLRYLHCVDDEVLQAISDSFPQLESLNLTDCRYVTDRGISWLEKLSSLS 377
Query: 352 HLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQNCN 408
L L G ++D G +++ K + L+I L + HI ++ L +L++S N
Sbjct: 378 MLKLGGTSVSDYGILRIKDLLKRISELDISSCILCSEKITSHILNNVEHLKVLDISNNPQ 437
Query: 409 LTDKTLEL 416
LT + L
Sbjct: 438 LTKNSWSL 445
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 168/408 (41%), Gaps = 85/408 (20%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--------- 115
S S +T L+H+ NL+ L C ++ + LEH+ L++L +L
Sbjct: 204 SCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSLETLELYECVKIDDNGL 263
Query: 116 ---------------NNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL--VNLKGLMK 156
I+A G+ + A + +L L L RC+ + G V+L+ L K
Sbjct: 264 KYLQKCSQIRHLCLSGTCISADGIASLADIFMPHLENLHLTRCSNLVGSQFSVSLRKLSK 323
Query: 157 -LESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEG 213
++ L +++ +C+ D ++ +S L+SL ++ C VTD GI++L+ L L++L L G
Sbjct: 324 NMKRLQLRYLHCVDDEVLQAISDSFPQLESLNLTDCRYVTDRGISWLEKLSSLSMLKLGG 383
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN-- 271
S+S G L +L L + L++ SC + E + +
Sbjct: 384 --------TSVSDYGILRIKDL---------------LKRISELDISSCILCSEKITSHI 420
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS------LRKLAGL-S 324
L + +LK L++S+ + LS L+ + L I +G L +A L
Sbjct: 421 LNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGKDFLTSVACLFP 480
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L++L L +I A T L HL L ++ F L SL+
Sbjct: 481 KLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPF-----KFDFLISLK------ 529
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
++L LNLS +TD +I L L SLN+ N R
Sbjct: 530 -----------NALQHLNLSSCHFVTDDLCTIIGELINLESLNLKNCR 566
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 171/387 (44%), Gaps = 72/387 (18%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V + L H+ + ++L++L+ C++I D GL++L+ S + L I+A G+ + A
Sbjct: 233 VDNRALEHIGNLTSLETLELYECVKIDDNGLKYLQKCSQIRHLCLS-GTCISADGIASLA 291
Query: 129 GLI--NLVKLDLERCTRIHGGL--VNLKGLMK---------------------------L 157
+ +L L L RC+ + G V+L+ L K L
Sbjct: 292 DIFMPHLENLHLTRCSNLVGSQFSVSLRKLSKNMKRLQLRYLHCVDDEVLQAISDSFPQL 351
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGC-- 214
ESLN+ C +TD + L L++L L++ + V+D GI +K L++++ L++ C
Sbjct: 352 ESLNLTDCRYVTDRGISWLEKLSSLSMLKLGGTSVSDYGILRIKDLLKRISELDISSCIL 411
Query: 215 ---PVTAACLDSLSAL---------------GSLFYLN-LNRCQLSDDGCEKFSRL---- 251
+T+ L+++ L SL Y N L R L E+ L
Sbjct: 412 CSEKITSHILNNVEHLKVLDISNNPQLTKNSWSLSYQNFLKRLPLKTLVIEEGGTLGKDF 471
Query: 252 --------TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN- 301
LE+L L C I + T L+ L+LS +V L L N
Sbjct: 472 LTSVACLFPKLETLLLSKCRIDGDDFKAFTDFGCLRHLKLSHCEVSKPFKFDFLISLKNA 531
Query: 302 LESINLSFTGISDGSLRKLAG-LSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 359
L+ +NLS L + G L +L+SLNL + R +T+ L +L SL+ L++L+L G
Sbjct: 532 LQHLNLSSCHFVTDDLCTIIGELINLESLNLKNCRNVTNRALLSLYSLSHLSYLNLRGCP 591
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTD 386
++ L +NL S+ + +T+
Sbjct: 592 LSQEAVWLLE--RNLNSISVLKYDMTN 616
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 42/252 (16%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTG-----------LCNLKCLELSD- 285
++SDD S LE+L L C + DEGL LT C+LK L+LS
Sbjct: 72 RVSDDWMSPISTFL-LEALVLSFCVHLTDEGLYKLTSSQEDLHKDSPLTCSLKLLDLSGC 130
Query: 286 TQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
+Q+ + G+ LS +LE++ L + + + SL + + LKSL++ +I+ +GL
Sbjct: 131 SQLSNVGMEALSYFRSLETLVLDHCSSLGNISLSYIRDIPCLKSLSIACCDKISGSGLEQ 190
Query: 344 LTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLL 401
L L L L+L +RIT ++ + KNL+ L++ D ++HI +L+SL
Sbjct: 191 LFYLKRLEFLNLSSCSRITSDALLHIGSLKNLKHLKLRNCARVDNRALEHIGNLTSL--- 247
Query: 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+TLEL + +I GL++L+ +R L L ++A+
Sbjct: 248 ----------ETLELYECV-----------KIDDNGLKYLQKCSQIRHLCLSGTCISADG 286
Query: 462 IKRLQSRDLPNL 473
I L +P+L
Sbjct: 287 IASLADIFMPHL 298
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 111/266 (41%), Gaps = 45/266 (16%)
Query: 13 ELVYSRCLTEVSLEAFRDC--ALQDLCLGQYPGVNDK---WMDVIASQGSSLLSVDLSGS 67
+L Y C+ + L+A D L+ L L V D+ W++ + SSL + L G+
Sbjct: 329 QLRYLHCVDDEVLQAISDSFPQLESLNLTDCRYVTDRGISWLEKL----SSLSMLKLGGT 384
Query: 68 DVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMK 125
V+D G++ +KD + LD + CI S+ H L + +L L N +T
Sbjct: 385 SVSDYGILRIKDLLKRISELDISSCILCSEKITSHILNNVEHLKVLDISNNPQLTKNSWS 444
Query: 126 -AFAGLINLVKLDLERCTRIHGGLVNLKGLM-------KLESLNIKWCNCITDSDMKPLS 177
++ L +L L+ GG + L KLE+L + C I D K +
Sbjct: 445 LSYQNF--LKRLPLKTLVIEEGGTLGKDFLTSVACLFPKLETLLLSKCR-IDGDDFKAFT 501
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L+ L++S +V+ P L SL +L +LNL+
Sbjct: 502 DFGCLRHLKLSHCEVSK--------------------PFKFDFLISLK--NALQHLNLSS 539
Query: 238 CQL-SDDGCEKFSRLTNLESLNLDSC 262
C +DD C L NLESLNL +C
Sbjct: 540 CHFVTDDLCTIIGELINLESLNLKNC 565
>gi|428304289|ref|YP_007141114.1| hypothetical protein Cri9333_0667 [Crinalium epipsammum PCC 9333]
gi|428245824|gb|AFZ11604.1| leucine-rich repeat-containing protein [Crinalium epipsammum PCC
9333]
Length = 382
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 133/259 (51%), Gaps = 25/259 (9%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
LE ++ L NLT L F N + GL NL L L R + ++K L+ L
Sbjct: 126 LEGIQALRNLTELRFGENKI---SDLAPLRGLTNLTTLHLYR-----NQISDVKPLLSLR 177
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+L + SD+KPL+GLT L +L + +K+TD + L GL LT L L G ++
Sbjct: 178 NLTSLELSSNPISDLKPLAGLTKLTTLGLGGNKITD--LKPLAGLANLTTLELSGNKISD 235
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
L L+ L +L L L+ ++SD + + LT L L LD+ I D + L GL NL
Sbjct: 236 --LKPLAGLANLTKLYLSGNKISD--LKPVAGLTKLTKLWLDNNQISD--VQPLAGLINL 289
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L L + ++ ++ L+ LT+L + LS ISD + L GL+ L L+L+ +I+D
Sbjct: 290 TFLSLDNNKIND--VQPLANLTSLMGLGLSLNKISD--VTPLRGLTKLNWLDLNLNKISD 345
Query: 339 TGLAALTSLTGLTHLDLFG 357
+T L GLT+L++ G
Sbjct: 346 -----VTPLAGLTNLNVNG 359
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L L +K LNL ++IT L + +L LT L +I+D A LR NL +L +
Sbjct: 107 LNALQRVKHLNLINKEITS--LEGIQALRNLTELRFGENKISD--LAPLRGLTNLTTLHL 162
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
++D VK + L +LT L LS N ++D L+ ++GLT L +L + ++IT L+
Sbjct: 163 YRNQISD--VKPLLSLRNLTSLELSSNP-ISD--LKPLAGLTKLTTLGLGGNKITD--LK 215
Query: 440 HLKPLKNLRSLTLESCKVTANDIKRL 465
L L NL +L L K++ D+K L
Sbjct: 216 PLAGLANLTTLELSGNKIS--DLKPL 239
>gi|298359924|gb|ADI77541.1| internalin A [Listeria monocytogenes]
gi|298359926|gb|ADI77542.1| internalin A [Listeria monocytogenes]
gi|298360172|gb|ADI77665.1| internalin A [Listeria monocytogenes]
gi|298360388|gb|ADI77773.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698610|gb|ACN18980.1| internalin A [Listeria monocytogenes]
gi|223698616|gb|ACN18984.1| internalin A [Listeria monocytogenes]
gi|223698631|gb|ACN18994.1| internalin A [Listeria monocytogenes]
gi|223698637|gb|ACN18998.1| internalin A [Listeria monocytogenes]
gi|223698640|gb|ACN19000.1| internalin A [Listeria monocytogenes]
gi|223698649|gb|ACN19006.1| internalin A [Listeria monocytogenes]
gi|223698652|gb|ACN19008.1| internalin A [Listeria monocytogenes]
gi|223698661|gb|ACN19014.1| internalin A [Listeria monocytogenes]
gi|223698667|gb|ACN19018.1| internalin A [Listeria monocytogenes]
gi|223698676|gb|ACN19024.1| internalin A [Listeria monocytogenes]
gi|223698679|gb|ACN19026.1| internalin A [Listeria monocytogenes]
gi|223698685|gb|ACN19030.1| internalin A [Listeria monocytogenes]
gi|223698688|gb|ACN19032.1| internalin A [Listeria monocytogenes]
gi|223698709|gb|ACN19046.1| internalin A [Listeria monocytogenes]
gi|223698721|gb|ACN19054.1| internalin A [Listeria monocytogenes]
gi|223698724|gb|ACN19056.1| internalin A [Listeria monocytogenes]
gi|223698727|gb|ACN19058.1| internalin A [Listeria monocytogenes]
gi|223698730|gb|ACN19060.1| internalin A [Listeria monocytogenes]
gi|223698733|gb|ACN19062.1| internalin A [Listeria monocytogenes]
gi|223698742|gb|ACN19068.1| internalin A [Listeria monocytogenes]
gi|223698763|gb|ACN19082.1| internalin A [Listeria monocytogenes]
gi|223698790|gb|ACN19100.1| internalin A [Listeria monocytogenes]
gi|223698808|gb|ACN19112.1| internalin A [Listeria monocytogenes]
gi|223698811|gb|ACN19114.1| internalin A [Listeria monocytogenes]
gi|223698823|gb|ACN19122.1| internalin A [Listeria monocytogenes]
gi|223698853|gb|ACN19142.1| internalin A [Listeria monocytogenes]
gi|223698874|gb|ACN19156.1| internalin A [Listeria monocytogenes]
gi|223698889|gb|ACN19166.1| internalin A [Listeria monocytogenes]
gi|223698949|gb|ACN19206.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|357511813|ref|XP_003626195.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501210|gb|AES82413.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 679
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 127/448 (28%), Positives = 215/448 (47%), Gaps = 54/448 (12%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 -QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLEL-SDTQVGSSGLR 294
+++ G + NL +L+L C + D + + C NL CL+L S V GL
Sbjct: 374 IGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLY 433
Query: 295 HL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+ S LE ++L+ +G++D +L+ L+ S L L L I+D GLA + + L
Sbjct: 434 QIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKL 493
Query: 351 THLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
T LDL+ RI D G A L N + +L C +TDAG+K I +L L+ L
Sbjct: 494 TELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NRITDAGLKCISNLGELSDFELRGL 552
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL------------KNLRSLTLES 454
N+T G+ ++ VS R+ + L+H + L +NL + +
Sbjct: 553 SNITS---------IGIKAVAVSCKRLANLDLKHCEKLDDTGFRALAFYSQNLLQINMSY 603
Query: 455 CKVT-------ANDIKRLQSRDLPNLVS 475
C V+ +++KRLQ L LV+
Sbjct: 604 CNVSDHVLWLLMSNLKRLQDAKLVYLVN 631
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRIHG-GLVNLKGLMK-LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
LDL+ C ++ G L + L +N+ +CN ++D + L ++NLK LQ
Sbjct: 573 LDLKHCEKLDDTGFRALAFYSQNLLQINMSYCN-VSDHVLWLL--MSNLKRLQ------- 622
Query: 194 DSGIAYL 200
D+ + YL
Sbjct: 623 DAKLVYL 629
>gi|112961619|gb|ABI28432.1| internalin A [Listeria monocytogenes]
gi|112961637|gb|ABI28444.1| internalin A [Listeria monocytogenes]
gi|112961655|gb|ABI28456.1| internalin A [Listeria monocytogenes]
gi|112961658|gb|ABI28458.1| internalin A [Listeria monocytogenes]
gi|112961766|gb|ABI28530.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|371942068|gb|AEX60846.1| internaline [Listeria monocytogenes]
gi|371942088|gb|AEX60856.1| internaline [Listeria monocytogenes]
gi|371942106|gb|AEX60865.1| internaline [Listeria monocytogenes]
gi|371942134|gb|AEX60879.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|254825753|ref|ZP_05230754.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|255521302|ref|ZP_05388539.1| internalin A [Listeria monocytogenes FSL J1-175]
gi|130774771|gb|ABO32400.1| InlA [Listeria monocytogenes]
gi|130774777|gb|ABO32403.1| InlA [Listeria monocytogenes]
gi|130774779|gb|ABO32404.1| InlA [Listeria monocytogenes]
gi|150371874|dbj|BAF65726.1| internalin A [Listeria monocytogenes]
gi|150371876|dbj|BAF65727.1| internalin A [Listeria monocytogenes]
gi|223006790|gb|ACM69352.1| internalin A [Listeria monocytogenes]
gi|290350838|dbj|BAI78340.1| internalin A [Listeria monocytogenes]
gi|293594997|gb|EFG02758.1| internalin A [Listeria monocytogenes FSL J1-194]
gi|298359742|gb|ADI77450.1| internalin A [Listeria monocytogenes]
gi|298359744|gb|ADI77451.1| internalin A [Listeria monocytogenes]
gi|298359756|gb|ADI77457.1| internalin A [Listeria monocytogenes]
gi|298359790|gb|ADI77474.1| internalin A [Listeria monocytogenes]
gi|298359872|gb|ADI77515.1| internalin A [Listeria monocytogenes]
gi|298359880|gb|ADI77519.1| internalin A [Listeria monocytogenes]
gi|298359942|gb|ADI77550.1| internalin A [Listeria monocytogenes]
gi|298359946|gb|ADI77552.1| internalin A [Listeria monocytogenes]
gi|298360032|gb|ADI77595.1| internalin A [Listeria monocytogenes]
gi|298360064|gb|ADI77611.1| internalin A [Listeria monocytogenes]
gi|298360114|gb|ADI77636.1| internalin A [Listeria monocytogenes]
gi|298360202|gb|ADI77680.1| internalin A [Listeria monocytogenes]
gi|298360282|gb|ADI77720.1| internalin A [Listeria monocytogenes]
gi|298360284|gb|ADI77721.1| internalin A [Listeria monocytogenes]
gi|298360314|gb|ADI77736.1| internalin A [Listeria monocytogenes]
gi|298360330|gb|ADI77744.1| internalin A [Listeria monocytogenes]
gi|298360346|gb|ADI77752.1| internalin A [Listeria monocytogenes]
gi|298360410|gb|ADI77784.1| internalin A [Listeria monocytogenes]
gi|298360420|gb|ADI77789.1| internalin A [Listeria monocytogenes]
gi|298360440|gb|ADI77799.1| internalin A [Listeria monocytogenes]
gi|298360454|gb|ADI77806.1| internalin A [Listeria monocytogenes]
gi|298360470|gb|ADI77814.1| internalin A [Listeria monocytogenes]
gi|298360494|gb|ADI77826.1| internalin A [Listeria monocytogenes]
gi|298360506|gb|ADI77832.1| internalin A [Listeria monocytogenes]
gi|298360604|gb|ADI77881.1| internalin A [Listeria monocytogenes]
gi|298360610|gb|ADI77884.1| internalin A [Listeria monocytogenes]
gi|298360612|gb|ADI77885.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485048|gb|ADR52999.1| InlA [Listeria monocytogenes]
gi|313485083|gb|ADR53012.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360648|gb|ADI77903.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|371942070|gb|AEX60847.1| internaline [Listeria monocytogenes]
Length = 789
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774759|gb|ABO32394.1| InlA [Listeria monocytogenes]
gi|298360132|gb|ADI77645.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|254828935|ref|ZP_05233622.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|130774797|gb|ABO32413.1| InlA [Listeria monocytogenes]
gi|130774811|gb|ABO32418.1| InlA [Listeria monocytogenes]
gi|194239388|emb|CAQ76834.1| internalin A [Listeria monocytogenes]
gi|258601346|gb|EEW14671.1| internalin A [Listeria monocytogenes FSL N3-165]
gi|298360424|gb|ADI77791.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821351|gb|ACL37812.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821255|gb|ACL37748.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|313485058|gb|ADR53003.1| InlA [Listeria monocytogenes]
Length = 765
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|294358389|gb|ADE73847.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698625|gb|ACN18990.1| internalin A [Listeria monocytogenes]
gi|223698736|gb|ACN19064.1| internalin A [Listeria monocytogenes]
gi|223698739|gb|ACN19066.1| internalin A [Listeria monocytogenes]
gi|223698847|gb|ACN19138.1| internalin A [Listeria monocytogenes]
gi|223698904|gb|ACN19176.1| internalin A [Listeria monocytogenes]
gi|223698955|gb|ACN19210.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|22347562|gb|AAM95926.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|298360122|gb|ADI77640.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698883|gb|ACN19162.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|371942090|gb|AEX60857.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|130774755|gb|ABO32392.1| InlA [Listeria monocytogenes]
gi|130774767|gb|ABO32398.1| InlA [Listeria monocytogenes]
gi|298359732|gb|ADI77445.1| internalin A [Listeria monocytogenes]
gi|298360004|gb|ADI77581.1| internalin A [Listeria monocytogenes]
gi|298360478|gb|ADI77818.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347548|gb|AAM95919.1| internalin A precursor [Listeria monocytogenes]
gi|22347558|gb|AAM95924.1| internalin A precursor [Listeria monocytogenes]
gi|22347560|gb|AAM95925.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|371942140|gb|AEX60882.1| internaline [Listeria monocytogenes]
Length = 790
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|298360700|gb|ADI77929.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290999835|ref|XP_002682485.1| predicted protein [Naegleria gruberi]
gi|284096112|gb|EFC49741.1| predicted protein [Naegleria gruberi]
Length = 342
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 6/240 (2%)
Query: 165 CNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLD 222
CN I ++++ + + L L+I +++ YL LQKL ++L LD
Sbjct: 102 CNDIDINNLQFICDNMKQLTLLKIDYNRINLESAKYLTRLQKLKHISLYSNLKFDEKALD 161
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
++ L L YL + + + G E S++ L +LN+ S IG EG ++ L +L L
Sbjct: 162 YINQLKELQYLGVYKNNIRVSGAESISKMIQLTNLNISSNFIGSEGAYYISKLPHLTILN 221
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ + +GS G H+S L L ++N+ I D + + LS LK LN+ +IT G
Sbjct: 222 ICENNIGSDGAEHISELKQLTNLNIENNRIKDNGAKCIGKLSQLKILNIAKNRIT-FGAM 280
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L +L LT+LD+ + G+ ++ K L +L+I L + G + +++ + L+N
Sbjct: 281 YLLALKQLTNLDISRNDLQALGSFFVSEMKQLTNLDI---SLNNIGTQGALNINQMKLVN 337
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 6/209 (2%)
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLE 303
C+ +LT L +D I E LT L LK + L S+ + L +++ L L+
Sbjct: 114 CDNMKQLT---LLKIDYNRINLESAKYLTRLQKLKHISLYSNLKFDEKALDYINQLKELQ 170
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ + I ++ + L +LN+ + I G ++ L LT L++ I
Sbjct: 171 YLGVYKNNIRVSGAESISKMIQLTNLNISSNFIGSEGAYYISKLPHLTILNICENNIGSD 230
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
GA ++ K L +L I + D G K I LS L +LN+++N +T + L++ L L
Sbjct: 231 GAEHISELKQLTNLNIENNRIKDNGAKCIGKLSQLKILNIAKN-RITFGAMYLLA-LKQL 288
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+L++S + + + G + +K L +L +
Sbjct: 289 TNLDISRNDLQALGSFFVSEMKQLTNLDI 317
>gi|219821366|gb|ACL37822.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|112961616|gb|ABI28430.1| internalin A [Listeria monocytogenes]
gi|112961649|gb|ABI28452.1| internalin A [Listeria monocytogenes]
gi|112961652|gb|ABI28454.1| internalin A [Listeria monocytogenes]
gi|112961664|gb|ABI28462.1| internalin A [Listeria monocytogenes]
gi|112961691|gb|ABI28480.1| internalin A [Listeria monocytogenes]
gi|112961718|gb|ABI28498.1| internalin A [Listeria monocytogenes]
gi|112961727|gb|ABI28504.1| internalin A [Listeria monocytogenes]
gi|112961748|gb|ABI28518.1| internalin A [Listeria monocytogenes]
gi|112961751|gb|ABI28520.1| internalin A [Listeria monocytogenes]
gi|112961769|gb|ABI28532.1| internalin A [Listeria monocytogenes]
gi|112961775|gb|ABI28536.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 205
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 206 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|112961697|gb|ABI28484.1| internalin A [Listeria monocytogenes]
gi|112961709|gb|ABI28492.1| internalin A [Listeria monocytogenes]
gi|112961730|gb|ABI28506.1| internalin A [Listeria monocytogenes]
gi|112961760|gb|ABI28526.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|71912408|gb|AAZ53236.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|298360360|gb|ADI77759.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112961679|gb|ABI28472.1| internalin A [Listeria monocytogenes]
gi|112961682|gb|ABI28474.1| internalin A [Listeria monocytogenes]
gi|112961685|gb|ABI28476.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 205
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 206 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 241
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 242 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|322952085|gb|ADX21042.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485077|gb|ADR53009.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|254854324|ref|ZP_05243672.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|300766414|ref|ZP_07076370.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|404279991|ref|YP_006680889.1| internalin A [Listeria monocytogenes SLCC2755]
gi|404285805|ref|YP_006692391.1| internalin A [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405754532|ref|YP_006677996.1| internalin A [Listeria monocytogenes SLCC2540]
gi|130774761|gb|ABO32395.1| InlA [Listeria monocytogenes]
gi|130774765|gb|ABO32397.1| InlA [Listeria monocytogenes]
gi|130774775|gb|ABO32402.1| InlA [Listeria monocytogenes]
gi|150371872|dbj|BAF65725.1| internalin A [Listeria monocytogenes]
gi|150371878|dbj|BAF65728.1| internalin A [Listeria monocytogenes]
gi|150371880|dbj|BAF65729.1| internalin A [Listeria monocytogenes]
gi|150371882|dbj|BAF65730.1| internalin A [Listeria monocytogenes]
gi|150371884|dbj|BAF65731.1| internalin A [Listeria monocytogenes]
gi|150371886|dbj|BAF65732.1| internalin A [Listeria monocytogenes]
gi|167861936|gb|ACA05667.1| InlA [Listeria monocytogenes]
gi|167861950|gb|ACA05674.1| InlA [Listeria monocytogenes]
gi|167861974|gb|ACA05686.1| InlA [Listeria monocytogenes]
gi|167861990|gb|ACA05694.1| InlA [Listeria monocytogenes]
gi|194239386|emb|CAQ76833.1| internalin A [Listeria monocytogenes]
gi|194239390|emb|CAQ76835.1| internalin A [Listeria monocytogenes]
gi|194239398|emb|CAQ76839.1| internalin A [Listeria monocytogenes]
gi|194326159|emb|CAQ77238.1| internalin A [Listeria monocytogenes]
gi|223006782|gb|ACM69348.1| internalin A [Listeria monocytogenes]
gi|258607720|gb|EEW20328.1| internalin A [Listeria monocytogenes FSL R2-503]
gi|290350822|dbj|BAI78332.1| internalin A [Listeria monocytogenes]
gi|290350824|dbj|BAI78333.1| internalin A [Listeria monocytogenes]
gi|298359734|gb|ADI77446.1| internalin A [Listeria monocytogenes]
gi|298359740|gb|ADI77449.1| internalin A [Listeria monocytogenes]
gi|298359774|gb|ADI77466.1| internalin A [Listeria monocytogenes]
gi|298359822|gb|ADI77490.1| internalin A [Listeria monocytogenes]
gi|298359826|gb|ADI77492.1| internalin A [Listeria monocytogenes]
gi|298359830|gb|ADI77494.1| internalin A [Listeria monocytogenes]
gi|298359834|gb|ADI77496.1| internalin A [Listeria monocytogenes]
gi|298359836|gb|ADI77497.1| internalin A [Listeria monocytogenes]
gi|298359846|gb|ADI77502.1| internalin A [Listeria monocytogenes]
gi|298359848|gb|ADI77503.1| internalin A [Listeria monocytogenes]
gi|298359854|gb|ADI77506.1| internalin A [Listeria monocytogenes]
gi|298359856|gb|ADI77507.1| internalin A [Listeria monocytogenes]
gi|298359868|gb|ADI77513.1| internalin A [Listeria monocytogenes]
gi|298359870|gb|ADI77514.1| internalin A [Listeria monocytogenes]
gi|298359888|gb|ADI77523.1| internalin A [Listeria monocytogenes]
gi|298359920|gb|ADI77539.1| internalin A [Listeria monocytogenes]
gi|298359954|gb|ADI77556.1| internalin A [Listeria monocytogenes]
gi|298359968|gb|ADI77563.1| internalin A [Listeria monocytogenes]
gi|298359972|gb|ADI77565.1| internalin A [Listeria monocytogenes]
gi|298359984|gb|ADI77571.1| internalin A [Listeria monocytogenes]
gi|298359998|gb|ADI77578.1| internalin A [Listeria monocytogenes]
gi|298360002|gb|ADI77580.1| internalin A [Listeria monocytogenes]
gi|298360006|gb|ADI77582.1| internalin A [Listeria monocytogenes]
gi|298360040|gb|ADI77599.1| internalin A [Listeria monocytogenes]
gi|298360042|gb|ADI77600.1| internalin A [Listeria monocytogenes]
gi|298360044|gb|ADI77601.1| internalin A [Listeria monocytogenes]
gi|298360050|gb|ADI77604.1| internalin A [Listeria monocytogenes]
gi|298360080|gb|ADI77619.1| internalin A [Listeria monocytogenes]
gi|298360090|gb|ADI77624.1| internalin A [Listeria monocytogenes]
gi|298360100|gb|ADI77629.1| internalin A [Listeria monocytogenes]
gi|298360126|gb|ADI77642.1| internalin A [Listeria monocytogenes]
gi|298360150|gb|ADI77654.1| internalin A [Listeria monocytogenes]
gi|298360156|gb|ADI77657.1| internalin A [Listeria monocytogenes]
gi|298360166|gb|ADI77662.1| internalin A [Listeria monocytogenes]
gi|298360188|gb|ADI77673.1| internalin A [Listeria monocytogenes]
gi|298360190|gb|ADI77674.1| internalin A [Listeria monocytogenes]
gi|298360194|gb|ADI77676.1| internalin A [Listeria monocytogenes]
gi|298360220|gb|ADI77689.1| internalin A [Listeria monocytogenes]
gi|298360222|gb|ADI77690.1| internalin A [Listeria monocytogenes]
gi|298360238|gb|ADI77698.1| internalin A [Listeria monocytogenes]
gi|298360246|gb|ADI77702.1| internalin A [Listeria monocytogenes]
gi|298360260|gb|ADI77709.1| internalin A [Listeria monocytogenes]
gi|298360264|gb|ADI77711.1| internalin A [Listeria monocytogenes]
gi|298360266|gb|ADI77712.1| internalin A [Listeria monocytogenes]
gi|298360294|gb|ADI77726.1| internalin A [Listeria monocytogenes]
gi|298360298|gb|ADI77728.1| internalin A [Listeria monocytogenes]
gi|298360312|gb|ADI77735.1| internalin A [Listeria monocytogenes]
gi|298360318|gb|ADI77738.1| internalin A [Listeria monocytogenes]
gi|298360356|gb|ADI77757.1| internalin A [Listeria monocytogenes]
gi|298360368|gb|ADI77763.1| internalin A [Listeria monocytogenes]
gi|298360396|gb|ADI77777.1| internalin A [Listeria monocytogenes]
gi|298360398|gb|ADI77778.1| internalin A [Listeria monocytogenes]
gi|298360400|gb|ADI77779.1| internalin A [Listeria monocytogenes]
gi|298360428|gb|ADI77793.1| internalin A [Listeria monocytogenes]
gi|298360434|gb|ADI77796.1| internalin A [Listeria monocytogenes]
gi|298360448|gb|ADI77803.1| internalin A [Listeria monocytogenes]
gi|298360462|gb|ADI77810.1| internalin A [Listeria monocytogenes]
gi|298360498|gb|ADI77828.1| internalin A [Listeria monocytogenes]
gi|298360502|gb|ADI77830.1| internalin A [Listeria monocytogenes]
gi|298360510|gb|ADI77834.1| internalin A [Listeria monocytogenes]
gi|298360514|gb|ADI77836.1| internalin A [Listeria monocytogenes]
gi|298360558|gb|ADI77858.1| internalin A [Listeria monocytogenes]
gi|298360560|gb|ADI77859.1| internalin A [Listeria monocytogenes]
gi|298360566|gb|ADI77862.1| internalin A [Listeria monocytogenes]
gi|298360586|gb|ADI77872.1| internalin A [Listeria monocytogenes]
gi|298360614|gb|ADI77886.1| internalin A [Listeria monocytogenes]
gi|298360630|gb|ADI77894.1| internalin A [Listeria monocytogenes]
gi|298360638|gb|ADI77898.1| internalin A [Listeria monocytogenes]
gi|298360652|gb|ADI77905.1| internalin A [Listeria monocytogenes]
gi|298360680|gb|ADI77919.1| internalin A [Listeria monocytogenes]
gi|298360682|gb|ADI77920.1| internalin A [Listeria monocytogenes]
gi|298360694|gb|ADI77926.1| internalin A [Listeria monocytogenes]
gi|298360704|gb|ADI77931.1| internalin A [Listeria monocytogenes]
gi|298360706|gb|ADI77932.1| internalin A [Listeria monocytogenes]
gi|300512880|gb|EFK39971.1| internalin A precursor [Listeria monocytogenes FSL N1-017]
gi|302034315|gb|ADK92311.1| internalin A [Listeria monocytogenes]
gi|302034317|gb|ADK92312.1| internalin A [Listeria monocytogenes]
gi|404223732|emb|CBY75094.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2540]
gi|404226626|emb|CBY48031.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244734|emb|CBY02959.1| internalin A (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|156403875|ref|XP_001640133.1| predicted protein [Nematostella vectensis]
gi|156227266|gb|EDO48070.1| predicted protein [Nematostella vectensis]
Length = 779
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 137/480 (28%), Positives = 225/480 (46%), Gaps = 58/480 (12%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL- 77
LT SL+ C LQDL L + GV D+ M IA +SLL ++LS ++DS L +L
Sbjct: 310 LTRESLKIIGQCRNLQDLNLSEVKGVTDEVMKDIAMGCTSLLYLNLSSCLISDSTLRYLA 369
Query: 78 KDCSNLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGL---- 130
+ C+N+Q L +C + S+ GL +L +G + L IT G K F G+
Sbjct: 370 RYCTNMQYLSLAYCTKFSNKGLSYLANGKGCHKVIYLDLSGCEQITDDGYK-FVGMGCSS 428
Query: 131 INLVKL-DLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
+N + L DL R I + L + LN + ++D+ K L+ L L+I
Sbjct: 429 LNTIILNDLPGLRDACIQSLTSECRTLRTVSILNSPF---LSDTAYKSLALCRKLHKLRI 485
Query: 188 S-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDD 243
+++TD+ + L K +L + + CP +T L +L+++ L +N+ C ++ D
Sbjct: 486 EGNNRITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALASVRHLNVINVADCVRIQDT 545
Query: 244 GCEKFSR---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT------QVGSSGLR 294
G + + ++ LNL +C ++ C +C L V +G+
Sbjct: 546 GVRQIVEGPSGSKIKELNLTNCVRVMPTVIRRFVYC-FRCHNLVYASFCYCEHVTDAGVE 604
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L L NL SI++S ISD G+SSL + N R + +A+T L GL +
Sbjct: 605 LLGTLPNLISIDMSGCNISDH------GVSSLGN-NAMMRDVVIAECSAITDL-GLQKM- 655
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSS-LTLLNLSQNCNLTDK 412
+ + L +L+I LTD +K++ L LNLS LTD
Sbjct: 656 -------------CQQCRFLENLDISHCTNLTDNAIKNLVFCCRLLRTLNLSGCDKLTDS 702
Query: 413 TLELISGLTGLVS-LNVSNSRITS-AGLRHL-KPLKNLRSLTLESCK-VTANDIKRLQSR 468
+L+ +SG+ + L++SN + S LR+L K K L+SLT+ C+ +T N +++ Q +
Sbjct: 703 SLQYLSGVCHYLEMLDLSNCTLVSDKALRYLRKGCKRLQSLTILYCRNITKNAVQKFQMK 762
>gi|112959518|gb|ABI27286.1| internalin A [Listeria monocytogenes]
gi|112959520|gb|ABI27287.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|149674|gb|AAA25289.1| internalin [Listeria monocytogenes]
gi|22347564|gb|AAM95927.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|298359892|gb|ADI77525.1| internalin A [Listeria monocytogenes]
gi|298360422|gb|ADI77790.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|226223065|ref|YP_002757172.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731210|ref|YP_006204706.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406703224|ref|YP_006753578.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
gi|167861892|gb|ACA05645.1| InlA [Listeria monocytogenes]
gi|167861914|gb|ACA05656.1| InlA [Listeria monocytogenes]
gi|167861978|gb|ACA05688.1| InlA [Listeria monocytogenes]
gi|194239396|emb|CAQ76838.1| internalin A [Listeria monocytogenes]
gi|225875527|emb|CAS04230.1| Internalin A [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|298359780|gb|ADI77469.1| internalin A [Listeria monocytogenes]
gi|384389968|gb|AFH79038.1| internalin A [Listeria monocytogenes 07PF0776]
gi|406360254|emb|CBY66527.1| internalin A (LPXTG motif) [Listeria monocytogenes L312]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|75907715|ref|YP_322011.1| small GTP-binding protein domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75701440|gb|ABA21116.1| Small GTP-binding protein domain protein [Anabaena variabilis ATCC
29413]
Length = 1107
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 148/288 (51%), Gaps = 22/288 (7%)
Query: 176 LSGLTNLKSLQIS---CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L GL NL+ L IS ++ D + + L++L L+ +E + A ++ L +L +
Sbjct: 76 LLGLPNLRKLDISGNPLERIPDL-VTQILHLEELILIRVEITEIPEA----IANLTNLTH 130
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS 290
L L Q+++ E ++LTNL L+L I + E + NLT L +L T++
Sbjct: 131 LILFSNQITE-TPEAIAKLTNLTQLDLSDNQITEIPEAIANLTNLTHLILFSNQITEIPE 189
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ ++ LTNL ++L I++ + +A L++L L+L QIT+ A+ +LT L
Sbjct: 190 A----IANLTNLTQLDLGDNQITEIP-KAIANLTNLTQLDLGDNQITEIP-KAIANLTNL 243
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
THL LF +IT+ A + N NL L++ +T+ K I +L++LT L LS N
Sbjct: 244 THLILFSNQITEIPEA-IANLTNLMQLDLSYNQITEIP-KAIANLTNLTQLVLSDNK--I 299
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+ E I+ LT L L++S+++IT + L NL L K+T
Sbjct: 300 TEIPEAIANLTNLTQLDLSDNKITEIP-ETIANLTNLTELYFNYNKIT 346
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 23/305 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L +DLS + +T+ + + +NL L F QI++ E + L+NLT L +
Sbjct: 149 TNLTQLDLSDNQITEIPEA-IANLTNLTHLIL-FSNQITEIP-EAIANLTNLTQLDLG-D 204
Query: 117 NAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N IT + KA A L NL +LDL + T I + NL L L I + N IT+ +
Sbjct: 205 NQIT-EIPKAIANLTNLTQLDLGDNQITEIPKAIANLTNLTHL----ILFSNQITEIP-E 258
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
++ LTNL L +S +++T+ A + L LT L L +T ++++ L +L L+
Sbjct: 259 AIANLTNLMQLDLSYNQITEIPKA-IANLTNLTQLVLSDNKITEIP-EAIANLTNLTQLD 316
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSG 292
L+ ++++ E + LTNL L + I E + LT L L TQ+ +
Sbjct: 317 LSDNKITE-IPETIANLTNLTELYFNYNKITQIAEAIAKLTNLTELHLSSNQITQIPEA- 374
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ LTNL + L++ I+ + +A L++L L+LD QIT AL SL L
Sbjct: 375 ---IANLTNLTELYLNYNKITQIA-EAIAKLTNLTELHLDGNQITQIP-EALESLPKLEK 429
Query: 353 LDLFG 357
LDL G
Sbjct: 430 LDLRG 434
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 35/214 (16%)
Query: 247 KFSRLTNLESLNL-DSCG----IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ +L LESL L G +GD L ++G NLK L L L GL N
Sbjct: 34 EIGKLQQLESLILGKQVGGYEWVGDRYLKKVSG-NNLKTLPLE-----------LLGLPN 81
Query: 302 LESINLSFTGISDGSLRKLAGLSS----LKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L ++ IS L ++ L + L+ L L +IT+ A+ +LT LTHL LF
Sbjct: 82 LRKLD-----ISGNPLERIPDLVTQILHLEELILIRVEITEIP-EAIANLTNLTHLILFS 135
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+IT++ A + NL L++ +T+ + I +L++LT L L N + E I
Sbjct: 136 NQITETPEA-IAKLTNLTQLDLSDNQITEIP-EAIANLTNLTHLILF--SNQITEIPEAI 191
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ LT L L++ +++IT K + NL +LT
Sbjct: 192 ANLTNLTQLDLGDNQITEIP----KAIANLTNLT 221
>gi|313485079|gb|ADR53010.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290989491|ref|XP_002677371.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
gi|284090978|gb|EFC44627.1| Hypothetical protein NAEGRDRAFT_67509 [Naegleria gruberi]
Length = 350
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 10/296 (3%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + ++ +K SG NL L + + + +L L +LT LN++ + +DS+
Sbjct: 56 INILLETLLKSFSG-RNLTKLDLRRNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSI 114
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
L L L++N L + + L L++ + G L L NL L +S
Sbjct: 115 RYLTKLSTLSINSNNLKTKELKIIKEMKQLTVLSIAKNSMQSGGAKLLRNLSNLTILNIS 174
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN------LDARQITD 338
+ ++G+ G ++L + L +N+S T IS + L +L LN L Q
Sbjct: 175 NNRIGNEGWKYLCSMKQLTKLNISGTNISSEGISYLTNFPNLTELNFSGNTSLRFSQKVQ 234
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
L+ L LT L + I D Y+ + L SL + + DA HI L
Sbjct: 235 EQLSELKYLTKLVINYIHPIPIDD--LQYIHKLEKLTSLSLKSNFMYDASAIHISKCEKL 292
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 454
T L+++ N NL+D E S L L LN+S + ++ G+ L+ + L SL ES
Sbjct: 293 TYLDVAIN-NLSDAAAEAFSHLPNLKYLNISENYLSKKGVELLRNMPQLTSLIYES 347
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 11/191 (5%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L++ SNL L+ + +I + G ++L + LT L+ N I+++G+ NL +L
Sbjct: 162 LRNLSNLTILNISNN-RIGNEGWKYLCSMKQLTKLNISGTN-ISSEGISYLTNFPNLTEL 219
Query: 137 D------LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
+ L ++ L LK L KL I + + I D++ + L L SL + +
Sbjct: 220 NFSGNTSLRFSQKVQEQLSELKYLTKLV---INYIHPIPIDDLQYIHKLEKLTSLSLKSN 276
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+ D+ ++ +KLT L++ ++ A ++ S L +L YLN++ LS G E
Sbjct: 277 FMYDASAIHISKCEKLTYLDVAINNLSDAAAEAFSHLPNLKYLNISENYLSKKGVELLRN 336
Query: 251 LTNLESLNLDS 261
+ L SL +S
Sbjct: 337 MPQLTSLIYES 347
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 4/141 (2%)
Query: 334 RQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
R LA L +L LT L++ + I + +R L +L I L +K I
Sbjct: 79 RNFIHAKLAEHLGNLHQLTDLNVDDSFIVEPAIDSIRYLTKLSTLSINSNNLKTKELKII 138
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
K++ LT+L++++N + +L+ L+ L LN+SN+RI + G ++L +K L L +
Sbjct: 139 KEMKQLTVLSIAKNS-MQSGGAKLLRNLSNLTILNISNNRIGNEGWKYLCSMKQLTKLNI 197
Query: 453 ESCKVTANDIKRLQSRDLPNL 473
+++ I L + PNL
Sbjct: 198 SGTNISSEGISYLT--NFPNL 216
>gi|386042770|ref|YP_005961575.1| internalin A [Listeria monocytogenes 10403S]
gi|404409675|ref|YP_006695263.1| internalin A [Listeria monocytogenes SLCC5850]
gi|403399436|sp|G2K3G6.1|INLA_LISM4 RecName: Full=Internalin-A; Flags: Precursor
gi|150371722|dbj|BAF65676.1| internalin A [Listeria monocytogenes]
gi|150371786|dbj|BAF65682.1| internalin A [Listeria monocytogenes]
gi|150371800|dbj|BAF65689.1| internalin A [Listeria monocytogenes]
gi|150371810|dbj|BAF65694.1| internalin A [Listeria monocytogenes]
gi|150371812|dbj|BAF65695.1| internalin A [Listeria monocytogenes]
gi|150371816|dbj|BAF65697.1| internalin A [Listeria monocytogenes]
gi|150371826|dbj|BAF65702.1| internalin A [Listeria monocytogenes]
gi|150371840|dbj|BAF65709.1| internalin A [Listeria monocytogenes]
gi|150371842|dbj|BAF65710.1| internalin A [Listeria monocytogenes]
gi|150371862|dbj|BAF65720.1| internalin A [Listeria monocytogenes]
gi|150371866|dbj|BAF65722.1| internalin A [Listeria monocytogenes]
gi|167861902|gb|ACA05650.1| InlA [Listeria monocytogenes]
gi|167861984|gb|ACA05691.1| InlA [Listeria monocytogenes]
gi|167862000|gb|ACA05699.1| InlA [Listeria monocytogenes]
gi|167862006|gb|ACA05702.1| InlA [Listeria monocytogenes]
gi|194239412|emb|CAQ76846.1| internalin A [Listeria monocytogenes]
gi|223006784|gb|ACM69349.1| internalin A [Listeria monocytogenes]
gi|298359776|gb|ADI77467.1| internalin A [Listeria monocytogenes]
gi|298359804|gb|ADI77481.1| internalin A [Listeria monocytogenes]
gi|298359874|gb|ADI77516.1| internalin A [Listeria monocytogenes]
gi|298360072|gb|ADI77615.1| internalin A [Listeria monocytogenes]
gi|298360106|gb|ADI77632.1| internalin A [Listeria monocytogenes]
gi|298360118|gb|ADI77638.1| internalin A [Listeria monocytogenes]
gi|298360218|gb|ADI77688.1| internalin A [Listeria monocytogenes]
gi|298360262|gb|ADI77710.1| internalin A [Listeria monocytogenes]
gi|298360280|gb|ADI77719.1| internalin A [Listeria monocytogenes]
gi|298360386|gb|ADI77772.1| internalin A [Listeria monocytogenes]
gi|298360468|gb|ADI77813.1| internalin A [Listeria monocytogenes]
gi|298360570|gb|ADI77864.1| internalin A [Listeria monocytogenes]
gi|298360722|gb|ADI77940.1| internalin A [Listeria monocytogenes]
gi|302034307|gb|ADK92307.1| internalin A [Listeria monocytogenes]
gi|302034309|gb|ADK92308.1| internalin A [Listeria monocytogenes]
gi|302034311|gb|ADK92309.1| internalin A [Listeria monocytogenes]
gi|302034313|gb|ADK92310.1| internalin A [Listeria monocytogenes]
gi|302034319|gb|ADK92313.1| internalin A [Listeria monocytogenes]
gi|302034321|gb|ADK92314.1| internalin A [Listeria monocytogenes]
gi|302034323|gb|ADK92315.1| internalin A [Listeria monocytogenes]
gi|302034325|gb|ADK92316.1| internalin A [Listeria monocytogenes]
gi|345536004|gb|AEO05444.1| internalin A [Listeria monocytogenes 10403S]
gi|404229501|emb|CBY50905.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC5850]
gi|443428772|gb|AGC92185.1| internalin A [Listeria monocytogenes]
gi|443428780|gb|AGC92189.1| internalin A [Listeria monocytogenes]
gi|443428864|gb|AGC92231.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|112961622|gb|ABI28434.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|219821276|gb|ACL37762.1| internalin A [Listeria monocytogenes]
gi|219821336|gb|ACL37802.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|112959452|gb|ABI27253.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|371942076|gb|AEX60850.1| internaline [Listeria monocytogenes]
gi|371942078|gb|AEX60851.1| internaline [Listeria monocytogenes]
gi|371942082|gb|AEX60853.1| internaline [Listeria monocytogenes]
Length = 789
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 259
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 260 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 291
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 292 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485054|gb|ADR53001.1| InlA [Listeria monocytogenes]
Length = 771
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|284800720|ref|YP_003412585.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284993906|ref|YP_003415674.1| Internalin A [Listeria monocytogenes 08-5923]
gi|130774827|gb|ABO32426.1| InlA [Listeria monocytogenes]
gi|167862038|gb|ACA05718.1| InlA [Listeria monocytogenes]
gi|194326145|emb|CAQ77231.1| internalin A [Listeria monocytogenes]
gi|194326165|emb|CAQ77241.1| internalin A [Listeria monocytogenes]
gi|284056282|gb|ADB67223.1| Internalin A [Listeria monocytogenes 08-5578]
gi|284059373|gb|ADB70312.1| Internalin A [Listeria monocytogenes 08-5923]
gi|298359730|gb|ADI77444.1| internalin A [Listeria monocytogenes]
gi|298359786|gb|ADI77472.1| internalin A [Listeria monocytogenes]
gi|298359904|gb|ADI77531.1| internalin A [Listeria monocytogenes]
gi|298359978|gb|ADI77568.1| internalin A [Listeria monocytogenes]
gi|298360068|gb|ADI77613.1| internalin A [Listeria monocytogenes]
gi|298360228|gb|ADI77693.1| internalin A [Listeria monocytogenes]
gi|298360452|gb|ADI77805.1| internalin A [Listeria monocytogenes]
gi|298360556|gb|ADI77857.1| internalin A [Listeria monocytogenes]
gi|298360576|gb|ADI77867.1| internalin A [Listeria monocytogenes]
gi|298360600|gb|ADI77879.1| internalin A [Listeria monocytogenes]
gi|298360678|gb|ADI77918.1| internalin A [Listeria monocytogenes]
gi|443428872|gb|AGC92235.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774769|gb|ABO32399.1| InlA [Listeria monocytogenes]
gi|130774773|gb|ABO32401.1| InlA [Listeria monocytogenes]
gi|167861932|gb|ACA05665.1| InlA [Listeria monocytogenes]
gi|167861992|gb|ACA05695.1| InlA [Listeria monocytogenes]
gi|167861994|gb|ACA05696.1| InlA [Listeria monocytogenes]
gi|167861998|gb|ACA05698.1| InlA [Listeria monocytogenes]
gi|167862004|gb|ACA05701.1| InlA [Listeria monocytogenes]
gi|167862034|gb|ACA05716.1| InlA [Listeria monocytogenes]
gi|194326169|emb|CAQ77243.1| internalin A [Listeria monocytogenes]
gi|298359894|gb|ADI77526.1| internalin A [Listeria monocytogenes]
gi|298360034|gb|ADI77596.1| internalin A [Listeria monocytogenes]
gi|298360110|gb|ADI77634.1| internalin A [Listeria monocytogenes]
gi|298360112|gb|ADI77635.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|449134939|ref|ZP_21770403.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
gi|448886418|gb|EMB16825.1| leucine-rich repeat domain protein [Rhodopirellula europaea 6C]
Length = 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 27/249 (10%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G ++ L L L+ L I + D+ K +SGL L ++ + VTD G + L L +
Sbjct: 108 GTVLRLAALPNLKRLRI-YGKEFDDAKAKSISGLPALIAVTFQDTSVTDDGASVLAELNE 166
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L ++L PVT L ++S L L LNL +++ + E S+L
Sbjct: 167 LQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKITGEAFEPISKLP------------- 213
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
L+ LEL++T G G+ ++ + LE +NL T I + SL+ G +S
Sbjct: 214 ------------LEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTS 261
Query: 326 LKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L +LN+D IT+ + + SL L L L + L+ + L +L + GL
Sbjct: 262 LTALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGL 321
Query: 385 TDAGVKHIK 393
+ K ++
Sbjct: 322 EEGPAKKLE 330
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 24/259 (9%)
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
D+ + S+ + + L + + D ++ L L NLK L + + + + +SGL
Sbjct: 83 DNAVKLLSKTSTVSELFMPAAAWADGTVLRLAALPNLKRLRIYGKEFDDAKAKSISGLPA 142
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI- 360
L ++ T ++D LA L+ L+ ++L +TD L A+++L LT L+L G +I
Sbjct: 143 LIAVTFQDTSVTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLRGTKIT 202
Query: 361 -------------------TDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSL 398
TD G + N+ LE LT + +K + +SL
Sbjct: 203 GEAFEPISKLPLEDLELAETDFGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSL 262
Query: 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
T LN+ +T++ + +I L L L++ + + L LKPL+ L +L + + +
Sbjct: 263 TALNIDNCPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLE 322
Query: 459 ANDIKRLQSRDLPNLVSFR 477
K+L++ PNL F
Sbjct: 323 EGPAKKLEAM-FPNLKRFE 340
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 14/195 (7%)
Query: 52 IASQGSSLLS-------VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG 104
+ G+S+L+ + L S VTD LI + L L+ +I+ E +
Sbjct: 153 VTDDGASVLAELNELQDISLMNSPVTDKTLIAISTLPKLTKLNLR-GTKITGEAFEPISK 211
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
L L L + +GM A A + L K++L + L +G L +LNI
Sbjct: 212 LP-LEDLELAETD-FGPEGMPAIANIEGLEKVNLWLTKIDNESLKAFEGKTSLTALNIDN 269
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C IT+ + + L +LK L + + V + LK LQ+L L + + L
Sbjct: 270 CPAITEEAIPVIVSLPHLKLLHLGKTSVAPDALPQLKPLQELETLFVTNLGLEEGPAKKL 329
Query: 225 SALGSLFYLNLNRCQ 239
A+ + NL R +
Sbjct: 330 EAM----FPNLKRFE 340
>gi|322952090|gb|ADX21044.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959438|gb|ABI27246.1| internalin A [Listeria monocytogenes]
gi|112959450|gb|ABI27252.1| internalin A [Listeria monocytogenes]
gi|112959456|gb|ABI27255.1| internalin A [Listeria monocytogenes]
gi|112959496|gb|ABI27275.1| internalin A [Listeria monocytogenes]
gi|112959498|gb|ABI27276.1| internalin A [Listeria monocytogenes]
gi|112959526|gb|ABI27290.1| internalin A [Listeria monocytogenes]
gi|112959528|gb|ABI27291.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|112961646|gb|ABI28450.1| internalin A [Listeria monocytogenes]
gi|112961721|gb|ABI28500.1| internalin A [Listeria monocytogenes]
gi|112961757|gb|ABI28524.1| internalin A [Listeria monocytogenes]
Length = 751
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 49 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 102
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 103 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 154
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 155 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 199
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 200 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 242
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 243 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 298
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 299 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 345
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 346 ISDLTPLANL----TRITQLGLN 364
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 5 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 49
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 50 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 102 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 154
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D + L LT L L L
Sbjct: 155 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
G ++ D G L + NL L++ I +L+ L
Sbjct: 211 GNQLKDIGT--LASLTNLTDLDLANN--------QISNLAPL------------------ 242
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ PL L +LT
Sbjct: 243 -SGLTKLTELKLGANQIS-----NISPLAGLTALT 271
>gi|390362171|ref|XP_003730087.1| PREDICTED: F-box/LRR-repeat protein 14-like [Strongylocentrotus
purpuratus]
Length = 478
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 68/344 (19%)
Query: 82 NLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL 138
N+QSL+ + C ++D GL H + + LT L+ IT + + L L LDL
Sbjct: 175 NIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQLEVLDL 234
Query: 139 ERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-----NLKSLQI---- 187
C+ I G LV +GL KL+ LN++ C I+D + L+G++ + L++
Sbjct: 235 AGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLELLVLQ 294
Query: 188 SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C K++D+ + + KGL KL LNL C C ++D G
Sbjct: 295 DCQKLSDTALMSIAKGLHKLRSLNLSFC-----------------------CGITDTGMI 331
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLTGL-CNLKCLELSDT-QVGSSGLRHLS-GLTNL 302
SR+ +L LNL SC I D GL +L + L+ S ++G + L H+S G+ NL
Sbjct: 332 SLSRMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNL 391
Query: 303 ESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFGAR 359
++++LS I+D G R + L ++ +LN+ ++TD GLA + L L +DL+G
Sbjct: 392 KNVSLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCT 451
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+ +T G++ I L LT+LNL
Sbjct: 452 M-----------------------ITTVGLERIMQLPCLTVLNL 472
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 34/307 (11%)
Query: 176 LSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSL 230
+ G+ N++SL +S C +TD G+ A+ K + LT+LNL C +T L + L L
Sbjct: 170 MQGMPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSLWRIEQYLKQL 229
Query: 231 FYLNLNRCQ-LSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTG------------- 274
L+L C +++ G +R L L+ LNL SC I D G+ L G
Sbjct: 230 EVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDLE 289
Query: 275 -LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLD 332
L C +LSDT + S GL L S+NLSF GI+D + L+ + SL+ LNL
Sbjct: 290 LLVLQDCQKLSDTALMSIA----KGLHKLRSLNLSFCCGITDTGMISLSRMQSLRELNLR 345
Query: 333 A-RQITDTGLAALTSLTG-LTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAG 388
+ I+D GLA L G LD F +I D+ +++ + NL+++ + +TD G
Sbjct: 346 SCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEG 405
Query: 389 V-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLK 445
V + ++ L ++T LN+ Q +TDK L LI+ L L +++ + IT+ GL + L
Sbjct: 406 VGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMITTVGLERIMQLP 465
Query: 446 NLRSLTL 452
L L L
Sbjct: 466 CLTVLNL 472
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 136/258 (52%), Gaps = 29/258 (11%)
Query: 62 VDLSG-SDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DL+G S++T++GL+ + + L+ L+ C ISD G+ +L G+S
Sbjct: 232 LDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVS------------- 278
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHG-GLVNL-KGLMKLESLNIKWCNCITDSDMKPLS 177
++A G +L L L+ C ++ L+++ KGL KL SLN+ +C ITD+ M LS
Sbjct: 279 ----VEAARGTRDLELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCGITDTGMISLS 334
Query: 178 GLTNLKSLQI-SCSKVTDSGIAYLKGL-QKLTLLNLEGC-PVTAACLDSLS-ALGSLFYL 233
+ +L+ L + SC ++D G+A+L L+ C + A L +S + +L +
Sbjct: 335 RMQSLRELNLRSCDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNV 394
Query: 234 NLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSD-TQVG 289
+L+ C ++D+G + R L N+ +LN+ C + D+GL + L LKC++L T +
Sbjct: 395 SLSSCHITDEGVGRLVRSLHNMTTLNIGQCVRVTDKGLALIAEHLKELKCIDLYGCTMIT 454
Query: 290 SSGLRHLSGLTNLESINL 307
+ GL + L L +NL
Sbjct: 455 TVGLERIMQLPCLTVLNL 472
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 35/254 (13%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN--------LTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ N++SLNL C + D GL + LT L C +++DT + R L
Sbjct: 173 MPNIQSLNLSGCYNLTDVGLSHAFSKEIPTLTVLNLSLCKQITDTSL----WRIEQYLKQ 228
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHL 353
LE ++L+ + I++ L +A GL LK LNL + R I+D G+ L ++ G L
Sbjct: 229 LEVLDLAGCSNITNTGLLVIARGLHKLKGLNLRSCRHISDVGIGYLAGVSVEAARGTRDL 288
Query: 354 DLF----GARITDSG-AAYLRNFKNLRSLEI---CGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+L +++D+ + + LRSL + CG +TD G+ + + SL LNL
Sbjct: 289 ELLVLQDCQKLSDTALMSIAKGLHKLRSLNLSFCCG--ITDTGMISLSRMQSLRELNLRS 346
Query: 406 NCNLTDKTLELISGLTG-LVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D L ++ G +L+ S +I A L H+ + + NL++++L SC +T +
Sbjct: 347 CDNISDIGLAHLAEYGGHFATLDASFCDKIGDAALSHISQGMPNLKNVSLSSCHITDEGV 406
Query: 463 KRLQSRDLPNLVSF 476
RL R L N+ +
Sbjct: 407 GRL-VRSLHNMTTL 419
>gi|167861908|gb|ACA05653.1| InlA [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
I+ LT L +L +RIT GL
Sbjct: 395 ITDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|130774791|gb|ABO32410.1| InlA [Listeria monocytogenes]
gi|298360240|gb|ADI77699.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|290993931|ref|XP_002679586.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
gi|284093203|gb|EFC46842.1| hypothetical protein NAEGRDRAFT_47566 [Naegleria gruberi]
Length = 675
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 148/300 (49%), Gaps = 42/300 (14%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLN 210
GL L +LN++ C+ ITD+ +K L+ ++ NL L + C+KV DS ++Y+ +L L+
Sbjct: 337 GLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLD 396
Query: 211 LEGCP-VTAACLDSLSALG---SLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GI 264
+ GC VT + LS L YL+L C Q++D+G S +T LE L L C I
Sbjct: 397 MTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTLQCCRHI 456
Query: 265 GDEGLVNLTGLC-NLKC--------LELSDTQVGS-----------------SGLRHLSG 298
+GL L C N++ LE+S + GS + LR +S
Sbjct: 457 TAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMGCKLTSDNCLRVISD 516
Query: 299 LT-NLESINLSFTG-ISDGSL-RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTG--LTH 352
T NL+ + LSF+ I+DG + R + +L LNL ITD L ++ + +
Sbjct: 517 WTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSNVVEY 576
Query: 353 LDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L G R T+ G YL N +L+ I + + G+ H+ SL +L++S+N +T
Sbjct: 577 LNLTGVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLAHLAYCPSLEILDISENTLIT 636
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 132/255 (51%), Gaps = 14/255 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDC---SNLQSLDFNFCIQISDGGL 99
VND M I SQ S L +D++G +VTD G+ HL + L+ LD FC Q++D G+
Sbjct: 378 VNDSAMSYI-SQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGV 436
Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+L ++ L L+ + ITA+G+ N+ L+L C + V L KLE
Sbjct: 437 RYLSEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLE 496
Query: 159 SLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSK-VTDSGIA-YLKGLQKLTLLNLEGCP 215
L++ C +D+ ++ +S T NLK L +S S +TD GI + + L+ LNL+ C
Sbjct: 497 KLSMMGCKLTSDNCLRVISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCS 556
Query: 216 -VTAACLDSLSALGS--LFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSC-GIGDEGLV 270
+T L+ +S S + YLNL + ++ G + T+L+ + C + +EGL
Sbjct: 557 NITDKSLECISKHLSNVVEYLNLTGVRGFTNGGLKYLENCTSLKEFVIQRCIHVNNEGLA 616
Query: 271 NLTGLCNLKCLELSD 285
+L +L+ L++S+
Sbjct: 617 HLAYCPSLEILDISE 631
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 306 NLSFTGISDGSLRKL-AGLSSLKSLNLDA-RQITDTGLAALTSLT-GLTHLDLFG-ARIT 361
N FT + + R+ GL +L +LN+ ITD G+ LT ++ LTHL+L G ++
Sbjct: 320 NFGFTSKRNPNSREPNYGLQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVN 379
Query: 362 DSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELI 417
DS +Y+ F L L++ G +TD GVKH+ + L L+L+ +TD+ + +
Sbjct: 380 DSAMSYISQFSQLNYLDMTGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYL 439
Query: 418 SGLTGLVSLNVSNSR-ITSAGLR-----------------HLKPLKNLRS--------LT 451
S +T L L + R IT+ GL HL + +RS L+
Sbjct: 440 SEMTELEDLTLQCCRHITAKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLS 499
Query: 452 LESCKVTANDIKRLQS 467
+ CK+T+++ R+ S
Sbjct: 500 MMGCKLTSDNCLRVIS 515
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 21/243 (8%)
Query: 251 LTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSD-TQVGSSGLRHLSGLTNLESINL 307
L L +LN+ C I D G+ LT + NL L L T+V S + ++S + L +++
Sbjct: 338 LQTLHTLNVQGCHYITDNGVKYLTYISQNLTHLNLRGCTKVNDSAMSYISQFSQLNYLDM 397
Query: 308 S----FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-IT 361
+ T + L + A + LK L+L Q+TD G+ L+ +T L L L R IT
Sbjct: 398 TGCVNVTDLGVKHLSQSACKTKLKYLDLTFCHQVTDEGVRYLSEMTELEDLTLQCCRHIT 457
Query: 362 DSGAAYLRNF-KNLRSLEICGGGLTD-AGVKH--IKDLSSLTLLNLSQNCNLT-DKTLEL 416
G L N +N+R L + G L + +GV+ + L L+++ C LT D L +
Sbjct: 458 AKGLTQLVNSCQNIRVLNLTGCHLLEISGVRSGSLPKLEKLSMMG----CKLTSDNCLRV 513
Query: 417 ISGLT-GLVSLNVSNS-RITSAGL-RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
IS T L L +S S IT G+ R + KNL L L+ C + S+ L N+
Sbjct: 514 ISDWTCNLKELVLSFSDMITDGGIERVIINSKNLSHLNLKKCSNITDKSLECISKHLSNV 573
Query: 474 VSF 476
V +
Sbjct: 574 VEY 576
>gi|112959506|gb|ABI27280.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|313485052|gb|ADR53000.1| InlA [Listeria monocytogenes]
Length = 771
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|29423714|gb|AAO73555.1| internalin A [Listeria monocytogenes]
Length = 743
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 147 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 191
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 192 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 234
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 235 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 290
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 291 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 337
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 338 ISDLTPLANL----TRITQLGLN 356
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 36 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 88
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 89 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 141
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 142 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 197
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 198 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 251
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 252 ----NISPLAGLTALT 263
>gi|219821261|gb|ACL37752.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 35 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 88 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 140
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 141 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 196
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 197 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 250
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 ----NISPLAGLTALT 262
>gi|219821324|gb|ACL37794.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 176/366 (48%), Gaps = 65/366 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLG---------------------ILTN 194
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L++++ Q+ S L LSGLT L + L + IS
Sbjct: 195 LDELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQIS 250
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + +AGL++L SL L Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 251 N--ISPIAGLTALTSLELHENQLED--ISPISNLKNLTYLALYFNNISD--ISPVSSLTK 304
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ + N IS LT L +L +RI
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRI 349
Query: 434 TSAGLR 439
+ GL
Sbjct: 350 SELGLN 355
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 150/340 (44%), Gaps = 92/340 (27%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDSDMKPLSGLTNLKSLQISC 189
+ DL++ T + + +K + LE LN I + N +TD + PL LT L + ++
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNN 71
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD S +A L L LTL N Q++D +
Sbjct: 72 NQITDISPLANLTNLTGLTLFN---------------------------NQITD--IDPL 102
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S
Sbjct: 103 KNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDIS 157
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+SD S+ LA L++L+SL QI+D + L LT L L L G ++ D G L
Sbjct: 158 SNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--L 211
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ NL SL++ I +L+ L SGLT L L +
Sbjct: 212 ASLTNLTSLDVANN--------QISNLAPL-------------------SGLTKLTELEL 244
Query: 429 SNSRITS----AG-------------LRHLKPLKNLRSLT 451
++I++ AG L + P+ NL++LT
Sbjct: 245 GYNQISNISPIAGLTALTSLELHENQLEDISPISNLKNLT 284
>gi|130774815|gb|ABO32420.1| InlA [Listeria monocytogenes]
gi|194239404|emb|CAQ76842.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|322952088|gb|ADX21043.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|112959446|gb|ABI27250.1| internalin A [Listeria monocytogenes]
gi|112959466|gb|ABI27260.1| internalin A [Listeria monocytogenes]
gi|112959470|gb|ABI27262.1| internalin A [Listeria monocytogenes]
gi|112959474|gb|ABI27264.1| internalin A [Listeria monocytogenes]
gi|112959476|gb|ABI27265.1| internalin A [Listeria monocytogenes]
gi|112959478|gb|ABI27266.1| internalin A [Listeria monocytogenes]
gi|112959484|gb|ABI27269.1| internalin A [Listeria monocytogenes]
gi|112959486|gb|ABI27270.1| internalin A [Listeria monocytogenes]
gi|112959492|gb|ABI27273.1| internalin A [Listeria monocytogenes]
gi|112959494|gb|ABI27274.1| internalin A [Listeria monocytogenes]
gi|112959504|gb|ABI27279.1| internalin A [Listeria monocytogenes]
gi|112959516|gb|ABI27285.1| internalin A [Listeria monocytogenes]
gi|112959532|gb|ABI27293.1| internalin A [Listeria monocytogenes]
gi|112959534|gb|ABI27294.1| internalin A [Listeria monocytogenes]
gi|112959540|gb|ABI27297.1| internalin A [Listeria monocytogenes]
gi|112959544|gb|ABI27299.1| internalin A [Listeria monocytogenes]
gi|112959550|gb|ABI27302.1| internalin A [Listeria monocytogenes]
gi|112959554|gb|ABI27304.1| internalin A [Listeria monocytogenes]
gi|112959558|gb|ABI27306.1| internalin A [Listeria monocytogenes]
gi|112959560|gb|ABI27307.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|112959508|gb|ABI27281.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 27 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 83 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 136
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 137 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 195
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 196 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 245
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 NISPLAGLTALT 257
>gi|219821339|gb|ACL37804.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|112959552|gb|ABI27303.1| internalin A [Listeria monocytogenes]
gi|112959556|gb|ABI27305.1| internalin A [Listeria monocytogenes]
Length = 737
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 35 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 88
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 89 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 140
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 141 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 185
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 186 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 228
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 229 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 284
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 285 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 331
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 332 ISDLTPLANL----TRITQLGLN 350
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 30 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 82
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 83 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 135
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 136 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 191
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 192 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 245
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 246 ----NISPLAGLTALT 257
>gi|294358397|gb|ADE73851.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 172/345 (49%), Gaps = 44/345 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+LN QL D G + LTNL L+L + I + L L+GL L L+L Q+ S +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNI 310
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+GLT L ++ L+ + D + ++ L +L L L I+D ++ ++SLT L L
Sbjct: 311 SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 366
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I+DL+ L
Sbjct: 367 FFYNNKVSDVSS--LANLTNINWLS--------AGHNQIRDLTPL 401
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|397781344|ref|YP_006545817.1| Internalin-A [Methanoculleus bourgensis MS2]
gi|396939846|emb|CCJ37101.1| Internalin-A [Methanoculleus bourgensis MS2]
Length = 2759
Score = 80.9 bits (198), Expect = 1e-12, Method: Composition-based stats.
Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 31/247 (12%)
Query: 137 DLERCTRIHG---GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
D+ TR+ G+ +L GL +L + + SD+ PL+GLTNL++L + ++V+
Sbjct: 1506 DMATLTRLSAAGRGIRDLSGLEYAVNLQTLYISNNQISDLSPLAGLTNLQTLWLQDNQVS 1565
Query: 194 D-SGIAYLKGLQKL--------------TLLNLEGCPVTA---ACLDSLSALGSLFYLNL 235
D S +A L LQ+L L NL + + L L+ L +L Y+ L
Sbjct: 1566 DLSPLAGLTNLQRLWLNQNQIRDVSPLAGLTNLRELLLAVNQISDLSPLAGLTNLGYVQL 1625
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
R Q+SD + LTNL + L I D L L GL NL L++S Q+ S L
Sbjct: 1626 YRNQISD--LSPLAGLTNLGYVQLYRNQISD--LSPLAGLTNLYFLDISYNQI--SDLSP 1679
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ LTNL +++S+ ISD + LAGL+ L L+LD QI+D ++ L L L L+L
Sbjct: 1680 LASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLDNNQISD--ISPLAGLINLYVLNL 1735
Query: 356 FGARITD 362
+I D
Sbjct: 1736 NYNQIRD 1742
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 36/150 (24%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QISD L L GL+NL + RN + AGL NL LD+
Sbjct: 1629 QISD--LSPLAGLTNLGYVQLYRNQI---SDLSPLAGLTNLYFLDISY------------ 1671
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
N I SD+ PL+ LTNL L IS ++++D I+ L GL +L+ L+L+
Sbjct: 1672 -------------NQI--SDLSPLASLTNLYFLDISYNQISD--ISPLAGLTRLSRLSLD 1714
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
++ + L+ L +L+ LNLN Q+ D
Sbjct: 1715 NNQISD--ISPLAGLINLYVLNLNYNQIRD 1742
Score = 49.3 bits (116), Expect = 0.004, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 268 GLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
G+ +L+GL NL+ L L + S L L+GLT+L++++L ISD L LAGL+
Sbjct: 727 GIRDLSGLEYAVNLQHLYLQQNR-QISDLGPLAGLTDLQTLDLWNNQISD--LSPLAGLT 783
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
+L L L + QI+D G L LT L L L+ +I D G L NL L + +
Sbjct: 784 NLSVLLLGSNQISDIG--PLAGLTDLQRLHLYDNQIRDIGP--LAGLTNLWELRLYNNQI 839
Query: 385 TDAG 388
D G
Sbjct: 840 RDIG 843
Score = 46.2 bits (108), Expect = 0.033, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 122 QGMKAFAGL---INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+G++ +GL +NL L L++ +I L L GL L++L++ W N I SD+ PL+G
Sbjct: 726 RGIRDLSGLEYAVNLQHLYLQQNRQI-SDLGPLAGLTDLQTLDL-WNNQI--SDLSPLAG 781
Query: 179 LTNLKSLQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL L + ++++D G +A L LQ+L L + + + L+ L +L+ L L
Sbjct: 782 LTNLSVLLLGSNQISDIGPLAGLTDLQRLHLYDNQ-----IRDIGPLAGLTNLWELRLYN 836
Query: 238 CQLSDDG 244
Q+ D G
Sbjct: 837 NQIRDIG 843
>gi|157877504|ref|XP_001687069.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130144|emb|CAJ09455.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 1207
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 141/290 (48%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
SG+ L L++L L++ P+ A L +L+ SL + L+RC+ E RL +L
Sbjct: 421 SGVRSLGSLKQLRCLHILYTPLHEAFLQALTTCSSLECIILHRCR-GVRSLEPLRRLQHL 479
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLK------CLELSD----TQVGSSGLRHLSGLTNLES 304
+SL+L + D L++LTG L+ C +++D + + R L T L +
Sbjct: 480 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 539
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 540 ANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 599
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ +TDAGV+ +++ + L LNL C
Sbjct: 600 RLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL---C 656
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T H P +NLR L+L C
Sbjct: 657 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLSDC 706
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 14/300 (4%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL-GSLF 231
++PL L +L+SL + VTD+ + L G +L L L+ C L L+ L G+L
Sbjct: 470 LEPLRRLQHLQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD-LSFLANLRGTLE 528
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L + R LS+ + L L+L S + D G+ L L L+ L LSD V
Sbjct: 529 RLLMPRTLLSNANMQHIGLCDKLVELHLQSLRQLTDIGV--LKDLTALRVLNLSDNLVTD 586
Query: 291 SGLRHLSGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
G L + +L+ +NL+F T ++ + L SL++ ITD G+ +
Sbjct: 587 EGCSALHCMPSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQE 646
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQ 405
T L +L+L G ++L+ +LR L + G +TD H + +L L+LS
Sbjct: 647 CTDLRYLNLCGCSELRR-LSWLQKMSSLRWLNLGGTRVTDEETNHYLPCARNLRFLSLS- 704
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+C+ ++L L L L++ ++ + + L L + LR L+LESC V D+ L
Sbjct: 705 DCSGV-RSLSFAVRLHQLEYLSLESTSVADSELPCLCHCRKLRYLSLESC-VDIRDVSPL 762
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 132/305 (43%), Gaps = 61/305 (20%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 479 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 535
Query: 118 AITAQGMKAFAGLINLVKLDLE-----------------RCTRIHGGLVNLKG------L 154
++ M+ LV+L L+ R + LV +G +
Sbjct: 536 LLSNANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCM 595
Query: 155 MKLESLNIKWCNCITD-SDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L+ LN+ +C CIT + SG + L SL +S + +TD+G+ ++ L LNL
Sbjct: 596 PSLQRLNLAFCRCITSLAAAFTASGRWMHRLLSLDVSHTNITDAGVQCMQECTDLRYLNL 655
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
GC L L + SL +LNL +R+T+ E+ + C
Sbjct: 656 CGCSELRR-LSWLQKMSSLRWLNLG-----------GTRVTDEETNHYLPCAR------- 696
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLS---GLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
NL+ L LSD SG+R LS L LE ++L T ++D L L L+
Sbjct: 697 -----NLRFLSLSDC----SGVRSLSFAVRLHQLEYLSLESTSVADSELPCLCHCRKLRY 747
Query: 329 LNLDA 333
L+L++
Sbjct: 748 LSLES 752
>gi|320168649|gb|EFW45548.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 136/330 (41%), Gaps = 6/330 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GLS LT L + N I++ AF GL L ++DL I
Sbjct: 93 QITSISANAFTGLSALTYLVLKENE-ISSISANAFTGLSALKEVDLSNNRIIDLPTAAFA 151
Query: 153 GLMKLESLNIK--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL ++ +L + N I + + +GLT LK L + + ++ A G LT L
Sbjct: 152 GLPQMSTLRLSRNQFNSIPSTAIT--TGLTALKELYLDANNISSISTAAFTGFPALTYLY 209
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L P+T ++ + L L +L L Q+S F+ L+ L L+L I
Sbjct: 210 LADNPITDIPANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSAS 269
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
TGL L L L Q+ S + L L+ + LS ++ GL +L L
Sbjct: 270 VFTGLTALSILYLQSNQLSSIPASSFTDLAALQHLYLSSNQFTNLPAAAFTGLDALIVLW 329
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L +T +ALTSL+ L +LDL +IT A L L + +
Sbjct: 330 LSGNPLTSVPTSALTSLSALRNLDLSSTKITSISANAFAGLNALTVLALHYNPIASISGS 389
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
L++LT L+LS N LT L GL
Sbjct: 390 AFTGLTALTALHLS-NTPLTTLPPGLFQGL 418
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 138/324 (42%), Gaps = 8/324 (2%)
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+ E T I G+ + + L+S N IT + +GLT L L ++ +++T
Sbjct: 45 NTESLTTIPSGIPSNTTHLSLQS------NQITSISVNAFTGLTALIWLYLTDNQITSIS 98
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
GL LT L L+ +++ ++ + L +L ++L+ ++ D F+ L + +
Sbjct: 99 ANAFTGLSALTYLVLKENEISSISANAFTGLSALKEVDLSNNRIIDLPTAAFAGLPQMST 158
Query: 257 LNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L TGL LK L L + S +G L + L+ I+D
Sbjct: 159 LRLSRNQFNSIPSTAITTGLTALKELYLDANNISSISTAAFTGFPALTYLYLADNPITDI 218
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
A L+ L+ L L QI+ A L+ L +LDL +I+ A+ L
Sbjct: 219 PANTFADLTELRHLYLRNNQISSVSATAFAGLSALNYLDLSMNKISSLSASVFTGLTALS 278
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + L+ DL++L L LS N T+ +GL L+ L +S + +TS
Sbjct: 279 ILYLQSNQLSSIPASSFTDLAALQHLYLSSN-QFTNLPAAAFTGLDALIVLWLSGNPLTS 337
Query: 436 AGLRHLKPLKNLRSLTLESCKVTA 459
L L LR+L L S K+T+
Sbjct: 338 VPTSALTSLSALRNLDLSSTKITS 361
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 259 LDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
+D+CG G G+ + +G +CN + L + + S HLS +N I+
Sbjct: 26 VDACGTG--GVCDCSGTTVICNTESLTTIPSGI-PSNTTHLSLQSN---------QITSI 73
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
S+ GL++L L L QIT A T L+ LT+L L I+ A L+
Sbjct: 74 SVNAFTGLTALIWLYLTDNQITSISANAFTGLSALTYLVLKENEISSISANAFTGLSALK 133
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
+++ + D L ++ L LS+N + + + +GLT L L + + I+S
Sbjct: 134 EVDLSNNRIIDLPTAAFAGLPQMSTLRLSRNQFNSIPSTAITTGLTALKELYLDANNISS 193
Query: 436 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
L L L +T DI DL
Sbjct: 194 ISTAAFTGFPALTYLYLADNPIT--DIPANTFADL 226
>gi|22347568|gb|AAM95929.1| internalin A precursor [Listeria monocytogenes]
Length = 743
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 34 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 89
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 90 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 143
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 144 -LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 202
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 203 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 252
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 NISPLAGLTALT 264
>gi|334117577|ref|ZP_08491668.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
gi|333460686|gb|EGK89294.1| leucine-rich repeat-containing protein [Microcoleus vaginatus
FGP-2]
Length = 348
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 142/274 (51%), Gaps = 23/274 (8%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L KLDL + ++K L L +L + D+KPL+ LTNL L +S + +
Sbjct: 79 LTKLDL-----FDNQIGDIKPLASLTNLTWLFLGSNQIGDIKPLASLTNLTRLSLSENPI 133
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
D I L L LT L+L + + L++L +L L L+ Q+ D + + LT
Sbjct: 134 GD--IKPLASLTNLTFLDLSDNQI--GDIKPLASLTNLTILFLSDNQIGD--IKPLASLT 187
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
NL L L IGD + L L NL L+LSD Q+G ++ L+ LTNL S++LS I
Sbjct: 188 NLTFLFLSDNKIGD--IKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLSSLDLSDNRI 243
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
G ++ LA L++L LNL QI D + L SLT LT L+L G I D L +
Sbjct: 244 --GDIKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRLNLDGNVIGD--IKPLASLT 297
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
NLRSL++ + D +K + L+ LT+L+LS N
Sbjct: 298 NLRSLDLSRNVIGD--IKPLASLTKLTVLHLSGN 329
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 141/293 (48%), Gaps = 44/293 (15%)
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
D+ D+ + +K ++L +L + F G ++ L L+NLT LS N +K
Sbjct: 83 DLFDNQIGDIKPLASLTNLTWLFLGSNQIGDIKPLASLTNLTRLSLSEN---PIGDIKPL 139
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A L NL LDL + ++K L L +L I + + D+KPL+ LTNL L +
Sbjct: 140 ASLTNLTFLDLS-----DNQIGDIKPLASLTNLTILFLSDNQIGDIKPLASLTNLTFLFL 194
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S +K+ D + L++L +L +L+L+ Q+ D +
Sbjct: 195 SDNKIGD--------------------------IKPLASLTNLTFLDLSDNQIGD--IKP 226
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LTNL SL+L IGD + L L NL L L D Q+G ++ L+ LTNL +NL
Sbjct: 227 LASLTNLSSLDLSDNRIGD--IKPLASLTNLTRLNLLDNQIGD--IKPLASLTNLTRLNL 282
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
I G ++ LA L++L+SL+L I D + L SLT LT L L G I
Sbjct: 283 DGNVI--GDIKPLASLTNLRSLDLSRNVIGD--IKPLASLTKLTVLHLSGNEI 331
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
+L++L L+L IGD + L L NL L L Q+G ++ L+ LTNL ++LS
Sbjct: 75 KLSSLTKLDLFDNQIGD--IKPLASLTNLTWLFLGSNQIGD--IKPLASLTNLTRLSLSE 130
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I G ++ LA L++L L+L QI D + L SLT LT L L +I D L
Sbjct: 131 NPI--GDIKPLASLTNLTFLDLSDNQIGD--IKPLASLTNLTILFLSDNQIGD--IKPLA 184
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSS---LTLLNLSQNCNLTDKTLELISGLTGLVSL 426
+ NL L L+D + IK L+S LT L+LS N + D ++ ++ LT L SL
Sbjct: 185 SLTNLTFL-----FLSDNKIGDIKPLASLTNLTFLDLSDN-QIGD--IKPLASLTNLSSL 236
Query: 427 NVSNSRI 433
++S++RI
Sbjct: 237 DLSDNRI 243
>gi|71657215|ref|XP_817126.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882298|gb|EAN95275.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 835
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 195/412 (47%), Gaps = 42/412 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+L ++ L + +++ +++L +C +L+ + N C + LE L L LT LS N
Sbjct: 193 SNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-N 249
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
IT +G+ AF + RC + + L MKL+ +N L
Sbjct: 250 MGITEEGL-AF----------ISRCNSLRH--IQLDNCMKLQGINC-------------L 283
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L L++L +S ++V+D GI L L+ L L L ++ ++ + L L L+L
Sbjct: 284 GSLIGLRTLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDLT 342
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++D+GC + ++ L L SC + D + L +L+ L+LS T V S+ L+
Sbjct: 343 ENWVTDEGCAALANCGQIQKLKLASCRCVSDVRWI--CALTSLRFLDLSKTHVRSADLQL 400
Query: 296 LSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
L+ LE +++ S +G+ D S + GL SL L+L I D G +L T LT L
Sbjct: 401 LTMCQRLEELHVASCSGVKDASF--VEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTFLS 458
Query: 355 LFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L R +TD ++ +NL +L + G + DA + + + L +L+L LTD
Sbjct: 459 LQDCRFLTD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD-- 514
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 464
+ + L L SL++S + +T G+ + +L + L E C +T + R
Sbjct: 515 VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITHFEFLR 566
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/443 (24%), Positives = 189/443 (42%), Gaps = 80/443 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D+ + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTMCQRLEELHVASCSGVKDASF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----------------------EGCP 215
L +L L ++ + + D+G L+ LT L+L EG
Sbjct: 427 LLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSLQDCRFLTDIQFVEPLRNLLNLNLEGTE 486
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
V A + L L L+L C L+D C L L+SL+L + DEG+ +++
Sbjct: 487 VVDANIIPLMHCTKLEVLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGVSDVSQ 544
Query: 275 LCNLKCLELSDTQVGS--SGLRHLSGLTNL--ESINL----------SFTGISDGSLRKL 320
+L+ ++LS+ + + LR L+ L ++ + +N+ S G+S ++L
Sbjct: 545 CISLERIDLSECCLITHFEFLRPLTALRHVIADRMNVLDVTGLGGSGSVEGVSIADCKRL 604
Query: 321 AGLSSLKS-----LNLDARQITDTGL-AALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 373
+ L++ L+L ITD+G+ + L L L+L IT+ A + +
Sbjct: 605 GSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSLRRLNLQNCTSITELSA--VAQLPS 662
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + +T+ V + ++L L + + +TD + + L LV L++S + +
Sbjct: 663 LTELLVRNMKITNKSVAFVARCATLEKLQMVECVEITD--VNSLKYLHRLVELDLSRTSV 720
Query: 434 TSAGLRHLKPLKNLRSLTLESCK 456
TS G+ L NL+ L L C+
Sbjct: 721 TSGGIVGLARCYNLKKLNLSGCR 743
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 580
Query: 118 AITAQGMKAFAGLINLVKLDLERC-----------------------TRIHGGLVNLKGL 154
+ G+ + + D +R + IH L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSIADCKRLGSMGLLEAPRLLDLSLKKSAITDSGIHSVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ LN++ NC + +++ ++ L +L L + K+T+ +A++ L L + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQMVEC 695
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
V ++SL L L L+L+R ++ G +R NL+ LNL C
Sbjct: 696 -VEITDVNSLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGC 742
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 145/318 (45%), Gaps = 35/318 (11%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP--VTAACLDSLSALG 228
S + L L+NL++L + + +++ + YL L + + C + CL SL L
Sbjct: 184 SGVTNLGVLSNLRNLTLCNTPLSEVMMLYLSECVSLERVVVNSCRGLRSLECLSSLQRLT 243
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L LN+ ++++G SR +L + LD+C + +G+ L L L+ L +S +V
Sbjct: 244 ELSLLNMG---ITEEGLAFISRCNSLRHIQLDNC-MKLQGINCLGSLIGLRTLSVSRNRV 299
Query: 289 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
G+R LS L NLE + L SF +S S+ + L L L+L +TD G AAL +
Sbjct: 300 SDDGIRSLSNLRNLEQLRLVSFNRLS--SVEPVLCLDKLLELDLTENWVTDEGCAALANC 357
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ L L R S ++ +LR L++ + A ++ + L L+++
Sbjct: 358 GQIQKLKLASCRCV-SDVRWICALTSLRFLDLSKTHVRSADLQLLTMCQRLEELHVASCS 416
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK-----------------------PL 444
+ D + + GL L L+++++ I AG R L+ PL
Sbjct: 417 GVKDASF--VEGLLSLGHLDLTDTSIKDAGTRSLRKCTALTFLSLQDCRFLTDIQFVEPL 474
Query: 445 KNLRSLTLESCKVTANDI 462
+NL +L LE +V +I
Sbjct: 475 RNLLNLNLEGTEVVDANI 492
>gi|219821342|gb|ACL37806.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 171/345 (49%), Gaps = 44/345 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 198
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+LN QL D G + LTNL L+L + I + L L+GL L L+L Q+ S +
Sbjct: 199 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNI 252
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+GLT L ++ L+ + D + ++ L +L L L I+D ++ ++SLT L L
Sbjct: 253 SPLTGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 308
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 309 FFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 343
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 142/317 (44%), Gaps = 68/317 (21%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ DL++ T + + +K + LE LN NL + S +++TD
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD 54
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
I LK L KL + + + A + L+ L +L L L Q++D + LTNL
Sbjct: 55 --ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLFNNQITD--IDPLKNLTNL 108
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S +SD
Sbjct: 109 NRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSD 163
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
S+ LA L++L+SL QI+D + L LT L L L G ++ D G L + NL
Sbjct: 164 ISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 217
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L++ I +L+ L SGLT L L + ++I+
Sbjct: 218 TDLDLANN--------QISNLAPL-------------------SGLTKLTELKLGANQIS 250
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 -----NISPLTGLTALT 262
>gi|397630643|gb|EJK69852.1| hypothetical protein THAOC_08850 [Thalassiosira oceanica]
Length = 859
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 146/297 (49%), Gaps = 38/297 (12%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSG---IAYLKGL 203
L+ + L S+ + N ITDS+M+ L +T L + CS +TD G I L+ L
Sbjct: 158 LEDIADLHSIEVSLPNSITDSEMEHAILYLQLVTRLNC--VGCSYLTDKGFKLIGRLREL 215
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
Q+L L+ L SL+ LG+L L +LS DG L S +
Sbjct: 216 QELYFLH-------NKQLTSLTFLGNLDRLK----KLSVDGM--------LNSRGKSTPQ 256
Query: 264 IGDEGLVNLTG-LCNLKCLELS-DTQVGSSGLRHLSGLTNLESINL---SFTGISDGSLR 318
+ DE L + G + +L+ L + D +V GL HL+ + LES++L + GI+D L+
Sbjct: 257 VTDETLGIIAGEMHSLRELIIGVDMEVSGIGLVHLAEMGRLESLSLERGAGEGITDNGLK 316
Query: 319 KLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLF---GARITDSGAAYLRNFKNL 374
L L L+SL + ++D L L L + L+L + TD GA L KNL
Sbjct: 317 VLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSKLKNL 376
Query: 375 RSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+ L + G LTD GV ++ +S+L LNL ++TD++LE + L GL L +S+
Sbjct: 377 KELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELSD 433
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 8/182 (4%)
Query: 65 SGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAITA 121
S VTD L I + +L+ L +++S GL HL + L SLS R IT
Sbjct: 253 STPQVTDETLGIIAGEMHSLRELIIGVDMEVSGIGLVHLAEMGRLESLSLERGAGEGITD 312
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCN--CITDSDMKPLSG 178
G+K L L L + C + +N L+ L ++E L + + TD + LS
Sbjct: 313 NGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDEGARQLSK 372
Query: 179 LTNLKSLQ-ISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
L NLK L + ++TD G+ YL + L LNL CP +T L+ L L L L L+
Sbjct: 373 LKNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLRYLKGLRKLELS 432
Query: 237 RC 238
C
Sbjct: 433 DC 434
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 32/316 (10%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
+ D +D+ S+G LS SD +T S L L+D ++L S++ + I+D +EH
Sbjct: 129 MTDNELDIFISKGY------LSRSDKKLTVSYLELLEDIADLHSIEVSLPNSITDSEMEH 182
Query: 102 -LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L +T L+ + +T +G K L L +L ++ L L L +L+ L
Sbjct: 183 AILYLQLVTRLNCVGCSYLTDKGFKLIGRLRELQELYFLHNKQL-TSLTFLGNLDRLKKL 241
Query: 161 NI--------KWCNCITDSDMKPLSG-LTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLN 210
++ K +TD + ++G + +L+ L I +V+ G+ +L + +L L+
Sbjct: 242 SVDGMLNSRGKSTPQVTDETLGIIAGEMHSLRELIIGVDMEVSGIGLVHLAEMGRLESLS 301
Query: 211 LE---GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNL---DSCG 263
LE G +T L L +LG L L + C LSD L +E L L D
Sbjct: 302 LERGAGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSS 361
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA 321
DEG L+ L NLK L L + + G+ +LS ++ LE +NL + I+D SL L
Sbjct: 362 FTDEGARQLSKLKNLKELSLVGWERLTDRGVYYLSKISTLECLNLRYCPSITDESLEHLR 421
Query: 322 GLSSLKSLNL---DAR 334
L L+ L L DAR
Sbjct: 422 YLKGLRKLELSDCDAR 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 28/157 (17%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR--RNNAITAQ 122
+G +TD+GL L L+SL C +SD L +L+ L + L +++ T +
Sbjct: 306 AGEGITDNGLKVLCSLGRLRSLRITHCAYLSDRSLNYLQHLHRIEKLELSCVDDSSFTDE 365
Query: 123 GMKAFAGLINLVKLDL---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
G + + L NL +L L ER T G+ L + LE LN+++C ITD ++ L
Sbjct: 366 GARQLSKLKNLKELSLVGWERLT--DRGVYYLSKISTLECLNLRYCPSITDESLEHLR-- 421
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
YLKGL+KL L + + P
Sbjct: 422 -------------------YLKGLRKLELSDCDARPA 439
>gi|85679240|gb|ABC72036.1| InlA [Listeria monocytogenes]
Length = 794
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 97 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 150
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 151 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 202
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG
Sbjct: 203 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 247
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 248 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 290
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 291 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 346
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 347 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 393
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 394 ISDLTPLANL----TRITQLGLN 412
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 97
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 98 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 149
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 150 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 202
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 203 ANLTTLERLDISSNKLSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 253
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 254 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 289
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 290 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 319
>gi|158299381|ref|XP_319486.4| AGAP010289-PA [Anopheles gambiae str. PEST]
gi|157014337|gb|EAA14603.5| AGAP010289-PA [Anopheles gambiae str. PEST]
Length = 381
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 37/252 (14%)
Query: 182 LKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
+K +Q+ C +TD I A+ L +LNL C Q
Sbjct: 136 IKRVQVGCYNITDMAIGHAFAADFPNLKVLNLSLCK-----------------------Q 172
Query: 240 LSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT--GLCNLKCLELSDTQ-VGSSGLR 294
++D + ++ L N+E L L C I + GL T G L+ L L D Q + LR
Sbjct: 173 VTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYLGLQDCQRLSDEALR 232
Query: 295 HLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGL 350
H++ GLT+L SINLSF ++D L+ LA +S L+ LNL A I+D G+A LT +
Sbjct: 233 HIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSI 292
Query: 351 THLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNC 407
+ LD+ F ++ D ++ + LRSL + +TD G+ I K L L LN+ Q
Sbjct: 293 STLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCS 352
Query: 408 NLTDKTLELISG 419
+TD+ LE+++
Sbjct: 353 RITDRGLEIVAA 364
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 32/245 (13%)
Query: 62 VDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSN 107
V + ++TD + H D NL+ L+ + C Q++D L +HL+ G SN
Sbjct: 139 VQVGCYNITDMAIGHAFAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSN 198
Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN--LKGLMKLESLNIKWC 165
+T+ + TA G A L L L+ C R+ + +GL L S+N+ +C
Sbjct: 199 ITNTGLSKE---TADGTPA------LEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFC 249
Query: 166 NCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTA--ACL 221
+TDS +K L+ ++ L+ L + +C ++D G+AYL +G ++ L++ C A A +
Sbjct: 250 VSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMV 309
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGL-VNLTGLCNL 278
L L L+L+ CQ++D+G + ++ L +LE+LN+ C I D GL + L NL
Sbjct: 310 HISQGLFQLRSLSLSACQITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINL 369
Query: 279 KCLEL 283
+ ++L
Sbjct: 370 RAIDL 374
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 15/218 (6%)
Query: 179 LTNLKSLQIS-CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALG--SLFYL 233
NLK L +S C +VTDS + + + L+ + +L L GC +T L +A G +L YL
Sbjct: 159 FPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNITNTGLSKETADGTPALEYL 218
Query: 234 NLNRCQ-LSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVG 289
L CQ LSD+ ++ LT+L S+NL C + D GL +L + L+ L L +
Sbjct: 219 GLQDCQRLSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNIS 278
Query: 290 SSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT- 345
G+ +L+ G ++ ++++SF ++D ++ ++ GL L+SL+L A QITD GL+ +
Sbjct: 279 DIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQITDEGLSRIAK 338
Query: 346 SLTGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG 381
SL L L++ +RITD G + NLR++++ G
Sbjct: 339 SLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYG 376
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 89/153 (58%), Gaps = 8/153 (5%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL +S L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLRSINLSFCVSVTDSGLKHLARMSRLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLK 183
G ++ LD+ C ++ +V++ +GL +L SL++ C ITD + ++ L +L+
Sbjct: 286 TEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSACQ-ITDEGLSRIAKSLHDLE 344
Query: 184 SLQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
+L I CS++TD G+ + L L ++L GC
Sbjct: 345 TLNIGQCSRITDRGLEIVAAELINLRAIDLYGC 377
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 103/199 (51%), Gaps = 18/199 (9%)
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-RQI 336
C ++D +G + + NL+ +NLS ++D SL ++ L +++ L L I
Sbjct: 143 CYNITDMAIGHA---FAADFPNLKVLNLSLCKQVTDSSLGRITQHLKNIEVLELGGCSNI 199
Query: 337 TDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGV 389
T+TGL+ T+ G L+ G R++D ++ + +LRS L C +TD+G+
Sbjct: 200 TNTGLSKETA-DGTPALEYLGLQDCQRLSDEALRHIAQGLTSLRSINLSFCVS-VTDSGL 257
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKN 446
KH+ +S L LNL N++D + L G + +L+VS ++ + H+ + L
Sbjct: 258 KHLARMSRLEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQ 317
Query: 447 LRSLTLESCKVTANDIKRL 465
LRSL+L +C++T + R+
Sbjct: 318 LRSLSLSACQITDEGLSRI 336
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + +S+ ++D+S D V D ++H+ + L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGCNSISTLDVSFCDKVADQAMVHISQGLFQLRSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + + IT +G++ A LINL +DL CTR+
Sbjct: 326 C-QITDEGLSRIAKSLHDLETLNIGQCSRITDRGLEIVAAELINLRAIDLYGCTRL 380
>gi|449278816|gb|EMC86555.1| F-box/LRR-repeat protein 13, partial [Columba livia]
Length = 546
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 201/452 (44%), Gaps = 97/452 (21%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV------------- 69
S ++ +C LQ+L L + G+ND+ M VI+ +LL ++LS +D+
Sbjct: 76 SFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTDITNGTLRLLSSSFH 135
Query: 70 -------------TDSGLIHL---KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLS 112
TD GL++L K C L LD + CIQIS G ++ G S + L
Sbjct: 136 NLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCIQISVDGFRNIANGCSRIQDLL 195
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------HGGLVNLKGLM--KLESLN 161
+ A+T ++A +E+C +I H K L KL +
Sbjct: 196 INKMPALTDGCIQAL----------VEKCRQITSVVFLDSPHLSDTTFKALAKCKLVKVG 245
Query: 162 IKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
I+ N ITD K +S ++ + ++ C ++TD+G++ + L+ + +LN+ C
Sbjct: 246 IEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDTGLSMISPLKHILVLNVADCI---- 301
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGL 275
++SD+G F S L LNL +C + D + +
Sbjct: 302 -------------------RISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQR 342
Query: 276 CN-LKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-D 332
C+ L L L + V +G+ L +++L S+++S T ISD LR L +K L+L +
Sbjct: 343 CHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALGRQGKIKELSLSE 402
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARI------TDSGA-AYLRNFKNLRSLEICG-GGL 384
+ I+DTG+ G HL+ G R+ TD A + + L ++ I G +
Sbjct: 403 CKNISDTGIQEFCK--GTKHLE--GCRVSSCPQLTDEAVRAMAFHCRRLTAVSIAGCPKM 458
Query: 385 TDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 415
TD+ ++++ L L++S +LTDK L+
Sbjct: 459 TDSCIQYLAAACHYLHFLDVSGCIHLTDKALK 490
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 172/372 (46%), Gaps = 57/372 (15%)
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCI 168
L+ R ++ K+ NL +L+L C ++ + + +G L LN+ + + I
Sbjct: 64 LNLRGCYSLRWPSFKSIGECRNLQELNLSECQGLNDESMRVISEGCRALLYLNLSYTD-I 122
Query: 169 TDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDS 223
T+ ++ LS NL+ L ++ C K TD G+ YL KG KL L+L GC + +D
Sbjct: 123 TNGTLRLLSSSFHNLQYLSLAHCRKFTDKGLLYLGSGKGCHKLIYLDLSGCIQIS--VDG 180
Query: 224 LSALGS----LFYLNLNRCQLSDDGC-----EKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ + + L +N+ DGC EK ++T++ + LDS + D L
Sbjct: 181 FRNIANGCSRIQDLLINKMPALTDGCIQALVEKCRQITSV--VFLDSPHLSDTTFKALAK 238
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DA 333
C L +VG G N + +LSF +S ++ +++ D
Sbjct: 239 -CKL-------VKVGIEG--------NNQITDLSFKLMSKCC-------PYIRHIHVADC 275
Query: 334 RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICGG-GLT 385
QITDTGL+ ++ L + L++ RI+D G +R F LR L + +T
Sbjct: 276 HQITDTGLSMISPLKHILVLNVADCIRISDEG---VRPFVQGSSGAKLRELNLTNCIRVT 332
Query: 386 DAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
DA V I + LT LNL N+TD +E + ++ L+SL+VS + I+ GLR L
Sbjct: 333 DASVTEIAQRCHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMGLRALGRQ 392
Query: 445 KNLRSLTLESCK 456
++ L+L CK
Sbjct: 393 GKIKELSLSECK 404
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 135/307 (43%), Gaps = 67/307 (21%)
Query: 12 NELVY---SRCLTEVSLEAFRDCA-----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
++L+Y S C+ ++S++ FR+ A +QDL + + P + D + + + + SV
Sbjct: 163 HKLIYLDLSGCI-QISVDGFRNIANGCSRIQDLLINKMPALTDGCIQALVEKCRQITSVV 221
Query: 64 -LSGSDVTDSGLIHLKDCS--------NLQSLDFNF-----------------CIQISDG 97
L ++D+ L C N Q D +F C QI+D
Sbjct: 222 FLDSPHLSDTTFKALAKCKLVKVGIEGNNQITDLSFKLMSKCCPYIRHIHVADCHQITDT 281
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAF---AGLINLVKLDLERCTRIHGGLVN--LK 152
GL + L ++ L+ I+ +G++ F + L +L+L C R+ V +
Sbjct: 282 GLSMISPLKHILVLNVADCIRISDEGVRPFVQGSSGAKLRELNLTNCIRVTDASVTEIAQ 341
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+L LN+++C +TD+ ++ L +++L SL +S + ++D G
Sbjct: 342 RCHELTYLNLRYCENVTDAGIEALGNISSLISLDVSGTSISDMG---------------- 385
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLT-NLESLNLDSCG-IGDEGL 269
L +L G + L+L+ C+ +SD G ++F + T +LE + SC + DE +
Sbjct: 386 --------LRALGRQGKIKELSLSECKNISDTGIQEFCKGTKHLEGCRVSSCPQLTDEAV 437
Query: 270 VNLTGLC 276
+ C
Sbjct: 438 RAMAFHC 444
>gi|887862|gb|AAA69530.1| internalin, partial [Listeria monocytogenes]
Length = 344
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 24 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 77
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L++ N +TD +KPL
Sbjct: 78 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSL--GNQVTD--LKPL 129
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 130 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 174
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 175 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 217
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 218 PGLTKLTELKLGANQISN--IXPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 273
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 274 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 320
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 321 ISDLTPLANL----TRITQLGLN 339
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 121/277 (43%), Gaps = 69/277 (24%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 16 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 71
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+L Q+TD
Sbjct: 72 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSL-GNQVTD- 125
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 126 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 184
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELISGLTGLVSLNVSNS 431
G L D G L+SLT NLTD L + GLT L L + +
Sbjct: 185 NGNQLKDIGT-----LASLT--------NLTDLDLANNQISNLAPLPGLTKLTELKLGAN 231
Query: 432 RITS----AGLRHL-------------KPLKNLRSLT 451
+I++ AGL L P+ NL++LT
Sbjct: 232 QISNIXPLAGLTALTNLELNENQLEDISPISNLKNLT 268
>gi|223698697|gb|ACN19038.1| truncated internalin A [Listeria monocytogenes]
gi|223698841|gb|ACN19134.1| truncated internalin A [Listeria monocytogenes]
gi|223698877|gb|ACN19158.1| truncated internalin A [Listeria monocytogenes]
gi|223698922|gb|ACN19188.1| truncated internalin A [Listeria monocytogenes]
Length = 406
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|158429248|pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 67 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 120
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 121 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 172
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 173 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 217
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 218 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 260
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 261 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 316
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 317 FNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ--------- 363
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 364 ISDLTPLANL----TRITQLGLN 382
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 114
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 115 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 166
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 167 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 222
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 223 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 277
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 278 -----NISPLAGLTALT 289
>gi|112959464|gb|ABI27259.1| internalin A [Listeria monocytogenes]
Length = 698
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 182/378 (48%), Gaps = 67/378 (17%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
++ S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 INFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT- 53
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT
Sbjct: 54 -DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTT 106
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 LERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG------------- 146
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT
Sbjct: 147 --------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTK 194
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+
Sbjct: 195 LTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNIS 250
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D + + + L+ L ++D V + +L+++ L+ N IS LT
Sbjct: 251 D--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLT 297
Query: 422 GLVSLNVSNSRITSAGLR 439
L +L +RIT GL
Sbjct: 298 PLANL----TRITQLGLN 311
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 25 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 78
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 79 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 133
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 134 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 186
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 187 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 218
>gi|290973003|ref|XP_002669239.1| predicted protein [Naegleria gruberi]
gi|284082784|gb|EFC36495.1| predicted protein [Naegleria gruberi]
Length = 313
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 1/179 (0%)
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ + L SL++ IG EG ++ + L L +S Q+G+ G++ + + L+S+N+
Sbjct: 123 NEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNII 182
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I ++ ++ + L SLN+ QI D G+ + + LT L++ RI GA +
Sbjct: 183 GNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKLI 242
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
K L SL+IC + GVK I+++ L LN+S N + D+ + IS + L SLN
Sbjct: 243 SEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGN-QIGDEEAKFISEMKQLTSLN 300
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
++ + L L++ Q+ +G + S + L SLN+ IG +G+ + + LK L +
Sbjct: 122 INEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVKFIIEMKQLKSLNI 181
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
Q+G+ G++ +S + L S+N+ I D ++ + + L SLN+ +I G
Sbjct: 182 IGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSLNICLNRIGAEGAKL 241
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ + LT LD+ RI G ++R K L+SL I G + D K I ++ LT LN
Sbjct: 242 ISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIGDEEAKFISEMKQLTSLN 300
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 2/204 (0%)
Query: 160 LNIKWCNCITDS--DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
+N+K+ + DS K ++ + L SL I +++ G ++ +++LT LN+ +
Sbjct: 104 VNVKFSRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIG 163
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
A + + + L LN+ Q+ +G + S + L SLN+ IGDEG+ + +
Sbjct: 164 AKGVKFIIEMKQLKSLNIIGNQIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQ 223
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L L + ++G+ G + +S + L S+++ + I ++ + + LKSLN+ QI
Sbjct: 224 LTSLNICLNRIGAEGAKLISEMKQLTSLDICYNRIGTEGVKFIREMKQLKSLNISGNQIG 283
Query: 338 DTGLAALTSLTGLTHLDLFGARIT 361
D ++ + LT L+ + ++
Sbjct: 284 DEEAKFISEMKQLTSLNTYKIKLV 307
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 333 ARQITDTGLAA--LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+R++ D+ A + + LT LD+ G +I GA ++ K L SL I + GVK
Sbjct: 109 SRKLLDSIEQAKFINEMKQLTSLDIGGNQIGAEGAKFISEVKQLTSLNISYNQIGAKGVK 168
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
I ++ L LN+ N + + ++LIS + L SLN+ ++I G++ + +K L SL
Sbjct: 169 FIIEMKQLKSLNIIGN-QIGAEGVKLISEMKQLASLNIGGNQIGDEGVKFILEMKQLTSL 227
Query: 451 TL-------ESCKVTANDIKRLQSRDL 470
+ E K+ + ++K+L S D+
Sbjct: 228 NICLNRIGAEGAKLIS-EMKQLTSLDI 253
>gi|149918909|ref|ZP_01907395.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
gi|149820283|gb|EDM79700.1| hypothetical protein PPSIR1_16600 [Plesiocystis pacifica SIR-1]
Length = 1503
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 78/257 (30%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
QG++ A LV LD++ + L L L+ L++ N IT + ++ LS +
Sbjct: 77 GQGLERLA----LVALDIDDAM-----VEVLSKLTGLQILDLSR-NAITATGVESLSWIG 126
Query: 181 NLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L L + ++ V D G L L+ L +LNL+ C + +L LG L L L+ +
Sbjct: 127 GLTQLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGELRELVLSHNR 186
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG- 298
+ D+G ++L L L L C +GDEG L L L+ L L VG +G
Sbjct: 187 ILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGPKAAAAFAGH 246
Query: 299 LTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTG-----LTH 352
L L+ + L+ + + R L+G L L+ L+L +I D GL L G L H
Sbjct: 247 LDKLQELELAVNQVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQPWGKRRVALEH 306
Query: 353 LDLFGARITDSGAAYLR 369
LDL IT + LR
Sbjct: 307 LDLIENGITLVSPSVLR 323
Score = 67.8 bits (164), Expect = 1e-08, Method: Composition-based stats.
Identities = 83/270 (30%), Positives = 119/270 (44%), Gaps = 13/270 (4%)
Query: 212 EGCPVTAACLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
E C V+ D L+AL L L L + D E S+LT L+ L+L I
Sbjct: 58 ERCFVSGFGADVLAALVERGQGLERLALVALDIDDAMVEVLSKLTGLQILDLSRNAITAT 117
Query: 268 GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G+ +L+ + L L L Q VG G L+ L +LE +NL GI + L L L
Sbjct: 118 GVESLSWIGGLTQLSLRSNQGVGDRGAEILASLRSLEVLNLDRCGIGPIGAQALGKLGEL 177
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL-T 385
+ L L +I D G AL L L L+L ++ D GAA L + L L + G +
Sbjct: 178 RELVLSHNRILDEGAVALAKLAKLRELELSVCQLGDEGAAALAKLRALEILRLGGNHVGP 237
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVSNSRITSAGLRHLKPL 444
A L L L L+ N + ++ +SG+ G L L++S ++I AGL L
Sbjct: 238 KAAAAFAGHLDKLQELELAVN-QVGEEGARSLSGMLGHLRRLDLSYNKIGDAGLEGLLQP 296
Query: 445 KNLRSLTLESCKVTANDI-----KRLQSRD 469
R + LE + N I L++RD
Sbjct: 297 WGKRRVALEHLDLIENGITLVSPSVLRTRD 326
>gi|384252153|gb|EIE25630.1| hypothetical protein COCSUDRAFT_83637 [Coccomyxa subellipsoidea
C-169]
Length = 433
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 180/380 (47%), Gaps = 51/380 (13%)
Query: 32 ALQ-DLCLGQ-YPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFN 89
ALQ +CL + +P + +MD +G V+++ VT++G + L++L
Sbjct: 56 ALQHPVCLAERFPELQALFMD--GCEG-----VNMTNEQVTEAGRLRY-----LKTLSLA 103
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI----- 144
C +D GL L + L LS + NA+T++ + +L+ LDL +C +
Sbjct: 104 GCRACTDKGLAGLAVIEGLQKLSLSKCNALTSRTLDLLQTSSSLISLDLGQCAWVDDSSM 163
Query: 145 ---------------------HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ G+ ++ L +E+LN+ I D+ ++ L+ +T+L+
Sbjct: 164 ALLCNSASLKQLSLADCVRLTNRGVQSVAKLKCIEALNLSGLREIDDAGVEALAAVTSLR 223
Query: 184 SLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRC-QL 240
L + C +V +A L GL KL++ + CP A L LS + SL L L+ C ++
Sbjct: 224 ELNLDRCGQVRGLTLAKLGGLHKLSMCD---CPCIADDSLGCLSGVTSLEDLKLDMCDKI 280
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS- 297
+D G + ++ LE L+L C D E + L+ L L+ L LS + + GL HL+
Sbjct: 281 TDKGAGALASMSALEDLDLHRCERLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLAR 340
Query: 298 GLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDL 355
G L ++L+ GI D ++ LA + L++LN++ + ++D G A L + + + +
Sbjct: 341 GCPLLSRLDLAGCVGIKDEGMQALAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFV 400
Query: 356 FGARITDSGAAYLRNFKNLR 375
I+ G L++ L+
Sbjct: 401 LTTNISQHGLQLLQDALGLQ 420
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L L C I+D L L G+++L L + IT +G A A + L LDL RC
Sbjct: 244 LHKLSMCDCPCIADDSLGCLSGVTSLEDLKLDMCDKITDKGAGALASMSALEDLDLHRCE 303
Query: 143 RIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAY 199
R+ + L L +L SL + C I + L+ G L L ++ C + D G+
Sbjct: 304 RLDCEAMRRLSALGQLRSLRLSGCVYIKAEGLGHLARGCPLLSRLDLAGCVGIKDEGMQA 363
Query: 200 LKGLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
L +Q L LN+ C AA L + ++ +F L N +S G + L+
Sbjct: 364 LAEMQHLQALNINQCKYVSDAGAAVLATSVSIRDVFVLTTN---ISQHGLQLLQDALGLQ 420
Query: 256 SLNLDSC 262
+ C
Sbjct: 421 PTTMSPC 427
>gi|290997409|ref|XP_002681274.1| predicted protein [Naegleria gruberi]
gi|284094897|gb|EFC48530.1| predicted protein [Naegleria gruberi]
Length = 237
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
R+T L +L + + I D + ++ + L CL+L Q+ + G + +S L NL +N+
Sbjct: 4 RMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGN 63
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I+D + + L +L L + + +IT ++ L LT L++ I D GA ++
Sbjct: 64 NPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFIS 123
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K+L+ L+I G++ G K I +L LT+L +SQN + D+ +IS + L L +
Sbjct: 124 EIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQ 183
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKV 457
+ I +AG + + L L + ++
Sbjct: 184 DCFIGNAGAISISRMDKLTHLDISENEI 211
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 1/215 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D+ +K +S + L L + +++ + G + L+ LT LN+ P+ ++S+
Sbjct: 16 NLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNNPINDEGIESIC 75
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L +L L ++ +++ + S+L NL LN+ IGDEG ++ + +LK L++S
Sbjct: 76 QLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFISEIKSLKILDISL 135
Query: 286 TQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
+ G + +S L L + +S GI D R ++ + L L + I + G ++
Sbjct: 136 NGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYIQDCFIGNAGAISI 195
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ + LTHLD+ I G +R+ K+L L I
Sbjct: 196 SRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSI 230
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 1/233 (0%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L +T L +L+I + + D+ + + +++LT L+LE + S+S L +L YLN+
Sbjct: 2 LGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI 61
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++D+G E +L NL L + S I + ++ L NL L ++ +G G +
Sbjct: 62 GNNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKF 121
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLD 354
+S + +L+ +++S GIS + ++ L L L + I D G ++ + L L
Sbjct: 122 ISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELY 181
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ I ++GA + L L+I + G I+D+ L+ L++ C
Sbjct: 182 IQDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYLSIEYQC 234
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 6/226 (2%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
++ LT+L NN I +K + + L LDLE + G ++ L L LNI
Sbjct: 5 MTQLTTLEIG-NNLIDDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNI-G 62
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I D ++ + L NL L +S ++T ++ L LT LN+ + +
Sbjct: 63 NNPINDEGIESICQLDNLTDLTVSSLRITSKSAKFISKLNNLTFLNIAYNNIGDEGAKFI 122
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLEL 283
S + SL L+++ +S G + S L L L + + GIGDEG ++ + L L +
Sbjct: 123 SEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFGIGDEGARMISEMKQLNELYI 182
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGIS---DGSLRKLAGLSSL 326
D +G++G +S + L +++S I + +R + LS L
Sbjct: 183 QDCFIGNAGAISISRMDKLTHLDISENEIQIEGETVIRDMKHLSYL 228
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 56/261 (21%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D M + S+ L +DL + + + G + + NL L+ I+D G+E + L
Sbjct: 19 DDNMVKLISEMKQLTCLDLEINQIFNEGAKSISELRNLTYLNIGNN-PINDEGIESICQL 77
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
NLT L+ + IT++ K + L NL LNI +
Sbjct: 78 DNLTDLTV-SSLRITSKSAKFISKLNNLT------------------------FLNIAY- 111
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I D K +S + +LK L IS + ++ G + L +LT+L
Sbjct: 112 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVL---------------- 155
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
Y++ N + D+G S + L L + C IG+ G ++++ + L L++S+
Sbjct: 156 ------YISQN-FGIGDEGARMISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISE 208
Query: 286 TQVGSSG------LRHLSGLT 300
++ G ++HLS L+
Sbjct: 209 NEIQIEGETVIRDMKHLSYLS 229
>gi|294358393|gb|ADE73849.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + + G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKEIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQI--ADITPLANLSNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L + G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKEIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|441470006|emb|CCQ19761.1| Internalin-A [Listeria monocytogenes]
Length = 489
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|406831652|ref|ZP_11091246.1| hypothetical protein SpalD1_08439 [Schlesneria paludicola DSM
18645]
Length = 267
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 77/156 (49%)
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
P+ A L + L L L L Q++D EK + NL L L + D G+ +L G
Sbjct: 92 PLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKG 151
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L+ + L TQVG L GL NL+SI L+ T ++D ++KL L L+ L L
Sbjct: 152 LSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGT 211
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
++D GL L + L LD+ I+D G A +R
Sbjct: 212 DVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAIRK 247
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
S I LK L+ L LL G VT ++ L + +L L L QLSD G E L+ L
Sbjct: 99 SEIGTLKELKTLWLL---GPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGL 155
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
E + L +GD+ L GL NLK + L+DT V +G++ L L +L+ + L+ T +SD
Sbjct: 156 EWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSD 215
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
L+ L + +LK L++ I+D G AA+
Sbjct: 216 DGLKYLIEMKALKRLDIGNTLISDEGQAAI 245
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L L++L L + D + L G+ NL L L +Q+ G+ HL GL+ LE I L T
Sbjct: 104 LKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT 163
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ D + L GL +LKS+ L+ +TD G+ L +L L +L L G ++D G YL
Sbjct: 164 QVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIE 223
Query: 371 FKNLRSLEICGGGLTDAGVKHIK 393
K L+ L+I ++D G I+
Sbjct: 224 MKALKRLDIGNTLISDEGQAAIR 246
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 4/163 (2%)
Query: 305 INLSFTG--ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ FTG S+R G++S+ SL R + L+ + +L L L L G ++TD
Sbjct: 61 VEFRFTGPMWVPKSIRSHGGVTSI-SLTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTD 119
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
L KNL L + L+D G++H+K LS L + L Q + DKT +++ GL
Sbjct: 120 VAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT-QVGDKTCDILQGLPN 178
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L S+ ++++ +T AG++ LK L +L+ L L V+ + +K L
Sbjct: 179 LKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L +D + + L + L L+++ L ++D ++ KL G+ +L L L Q++D G
Sbjct: 86 LTTTDRPLPAELLSEIGTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRG 145
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ L L+GL + L ++ D L+ NL+S+ + +TDAGVK +K L L
Sbjct: 146 IEHLKGLSGLEWIFLIQTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQY 205
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L+ +++D L+ + + L L++ N+ I+ G ++ K + S T+++ V+
Sbjct: 206 LGLA-GTDVSDDGLKYLIEMKALKRLDIGNTLISDEGQAAIR--KGMTSCTIDAGSVS 260
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L LK+L + +VTD + L G++ LT L L ++ ++ L L L ++ L +
Sbjct: 104 LKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT 163
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
Q+ D C+ L NL+S+ L+ + D G+ L L +L+ L L+ T V GL++L
Sbjct: 164 QVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIE 223
Query: 299 LTNLESINLSFTGISD 314
+ L+ +++ T ISD
Sbjct: 224 MKALKRLDIGNTLISD 239
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 112 SFRRNNAITAQGMKAFAGLINLV---KLDLERCTRIHGGLVN--------------LKGL 154
SF+ I A+ +++ G + + + + R HGG+ + L +
Sbjct: 43 SFQDERRIAAK-IESLGGRVEFRFTGPMWVPKSIRSHGGVTSISLTTTDRPLPAELLSEI 101
Query: 155 MKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L W +TD ++ L G+ NL L + S+++D GI +LKGL L + L
Sbjct: 102 GTLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLI 161
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
V D L L +L + LN ++D G +K L +L+ L L + D+GL L
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYL 221
Query: 273 TGLCNLKCLELSDTQVGSSG 292
+ LK L++ +T + G
Sbjct: 222 IEMKALKRLDIGNTLISDEG 241
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L LK L L QV + L G+ NL + L ++ +SD + L GLS L+ + L
Sbjct: 104 LKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYSQLSDRGIEHLKGLSGLEWIFLIQT 163
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
Q+ D L L L + L +TD+G L+ +L+ L + G ++D G+K++ +
Sbjct: 164 QVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTDVSDDGLKYLIE 223
Query: 395 LSSLTLLNL 403
+ +L L++
Sbjct: 224 MKALKRLDI 232
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L G VTD + L NL L + Q+SD G+EHL+GLS L + F + +
Sbjct: 112 LLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWI-FLIQTQVGDKT 169
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
GL NL + L G+ LK L L+ L + + ++D +K L + LK
Sbjct: 170 CDILQGLPNLKSIALNDTNVTDAGVKKLKALGDLQYLGLAGTD-VSDDGLKYLIEMKALK 228
Query: 184 SLQISCSKVTDSGIAYLK 201
L I + ++D G A ++
Sbjct: 229 RLDIGNTLISDEGQAAIR 246
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K L++L + G +TD V+ + + +LT L L + L+D+ +E + GL+GL + +
Sbjct: 103 TLKELKTLWLLGPQVTDVAVEKLVGMKNLTGLYLGYS-QLSDRGIEHLKGLSGLEWIFLI 161
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+++ L+ L NL+S+ L VT +K+L++
Sbjct: 162 QTQVGDKTCDILQGLPNLKSIALNDTNVTDAGVKKLKA 199
>gi|255525367|ref|ZP_05392306.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296187977|ref|ZP_06856369.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255510938|gb|EET87239.1| putative cell wall binding repeat 2-containing protein [Clostridium
carboxidivorans P7]
gi|296047103|gb|EFG86545.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 660
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 150/314 (47%), Gaps = 59/314 (18%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+KD S L++L + ++D + L L NLT NL KL
Sbjct: 373 IKDISGLENLTNLQILALTDTEVSDLSPLKNLT----------------------NLQKL 410
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+L RC ++ + LK L L++LN+ WC + SD+ PL LTNL+ L + +++D+
Sbjct: 411 NL-RCAQV-SDISPLKYLTNLQNLNL-WCAQV--SDISPLKDLTNLQKLDLHIPQISDT- 464
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-------------- 242
+ LK L L L+L+ V+ ++ L L +L LNL+R Q+SD
Sbjct: 465 -SALKNLTNLQQLSLQYTQVSH--INGLENLTNLQQLNLDRTQVSDISGLKDLTNLQKLN 521
Query: 243 ------DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L S + D + L L NL+ L+L++ QV S + L
Sbjct: 522 LNNNQVSNISPLKYLTNLQELDLSSNQVSD--ISPLKYLTNLQKLDLNNNQV--SDVSPL 577
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
LTNL+ + L+ ISD + L L +L+ L L QI+D ++ L L L L+L
Sbjct: 578 KYLTNLQDLLLNVNQISD--ISPLKDLINLQGLYLGINQISD--ISPLKYLINLRELNLK 633
Query: 357 GARITDSGAAYLRN 370
+++D+ L+N
Sbjct: 634 HTQVSDADKQSLKN 647
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 61/323 (18%)
Query: 116 NNAITAQGM---KAFAGLIN-----LVKLDLERCTRI-------HGGLVNLKGLMKLESL 160
NN +T + KA IN L+K D+ + T + H + ++ GL L +L
Sbjct: 326 NNIVTFKDKNLEKAIRATINKPTGELLKSDVNQITELDVSIINEHTDIKDISGLENLTNL 385
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA 219
I SD+ PL LTNL+ L + C++V+D S + YL LQ L L C +
Sbjct: 386 QILALTDTEVSDLSPLKNLTNLQKLNLRCAQVSDISPLKYLTNLQNLNLW----C-AQVS 440
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNL 278
+ L L +L L+L+ Q+SD K LTNL+ L+L + GL NLT NL
Sbjct: 441 DISPLKDLTNLQKLDLHIPQISDTSALK--NLTNLQQLSLQYTQVSHINGLENLT---NL 495
Query: 279 KCLELSDTQVGS-SGLR-------------------HLSGLTNLESINLSFTGISDGSLR 318
+ L L TQV SGL+ L LTNL+ ++LS +SD +
Sbjct: 496 QQLNLDRTQVSDISGLKDLTNLQKLNLNNNQVSNISPLKYLTNLQELDLSSNQVSD--IS 553
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L L++L+ L+L+ Q++D ++ L LT L L L +I+D + L++ NL+ L
Sbjct: 554 PLKYLTNLQKLDLNNNQVSD--VSPLKYLTNLQDLLLNVNQISD--ISPLKDLINLQGLY 609
Query: 379 ICGGGLTDAGVKHIKDLSSLTLL 401
+ G+ I D+S L L
Sbjct: 610 L--------GINQISDISPLKYL 624
>gi|29423725|gb|AAO73556.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 41 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 94
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 95 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 146
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG
Sbjct: 147 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 191
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 192 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 234
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 235 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 290
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 291 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 337
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 338 ISDLTPLANL----TRITQLGLN 356
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 33 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 88
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 89 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 142
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 143 -LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 201
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 202 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 251
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 252 NISPLAGLTALT 263
>gi|290975580|ref|XP_002670520.1| predicted protein [Naegleria gruberi]
gi|284084080|gb|EFC37776.1| predicted protein [Naegleria gruberi]
Length = 265
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 119/243 (48%), Gaps = 2/243 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L +L IS +++ D G + GL+ L L + + S+S L L L+++
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 239 QLSDDGCEKFS-RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++ D+G + S ++ L +L++ GI ++GLV L + NLK L D Q+ + +S
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ + +++S+ ++ L+ + + L L L IT + ++ L LT L++
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
I + G Y+ K L L+I G+ GV I ++ LT L++ N + ++ L ++
Sbjct: 181 NEIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNP-IPEEALRIL 239
Query: 418 SGL 420
G+
Sbjct: 240 DGM 242
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 2/201 (0%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L +L++ S IGD G + + GL NL L++ + +G +G + +S L L +++S
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 311 GISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
I D ++ ++ + L +L++ I++ GL L + L L + +++ A +
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
K + L+I + +K I ++ L L L +N +T +E+IS L L LN+S
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKN-GITSHQVEIISQLKQLTVLNIS 179
Query: 430 NSRITSAGLRHLKPLKNLRSL 450
+ I + G+ ++ LK L L
Sbjct: 180 ENEIRNEGVVYISGLKQLTEL 200
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 7/252 (2%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
+ L L+++ ++ D G L NL +L + +G G +++ L L L++S
Sbjct: 1 MKQLTALDISSNRIGDGGAMLIGGLKNLITLQIYENHLGPNGAKSISELKQLTILDISHN 60
Query: 287 QVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++ G++ +S + L ++++SF GIS+ L L + +LK L Q++ ++
Sbjct: 61 RIRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETIS 120
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+ +T LD+ + + K L L + G+T V+ I L LT+LN+S+
Sbjct: 121 KMKQITELDISYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISE 180
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N + ++ + ISGL L L++SN+ I G+ + + L L+ + N I
Sbjct: 181 N-EIRNEGVVYISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLS-----IYNNPIPEE 234
Query: 466 QSRDLPNLVSFR 477
R L + FR
Sbjct: 235 ALRILDGMKQFR 246
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 3/238 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+I DGG + GL NL +L N+ + G K+ + L L LD+ G+ ++
Sbjct: 13 RIGDGGAMLIGGLKNLITLQIYENH-LGPNGAKSISELKQLTILDISHNRIRDEGVKSIS 71
Query: 153 GLM-KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
M +L +L+I + I++ + PL + NLK L +++ + ++++T L++
Sbjct: 72 EKMDQLTNLDISFVG-ISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDI 130
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
L S+ + L L L + ++ E S+L L LN+ I +EG+V
Sbjct: 131 SYNLTNNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVY 190
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
++GL L L++S+ +G G+ + +T L +++ I + +LR L G+ + L
Sbjct: 191 ISGLKQLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 2/233 (0%)
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
GG + + GL L +L I + N + + K +S L L L IS +++ D G+ + + +
Sbjct: 17 GGAMLIGGLKNLITLQI-YENHLGPNGAKSISELKQLTILDISHNRIRDEGVKSISEKMD 75
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
+LT L++ ++ L L + +L L CQLS E S++ + L++
Sbjct: 76 QLTNLDISFVGISEKGLVPLVEMKNLKILAFYDCQLSTKQAETISKMKQITELDISYNLT 135
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
+E L ++ + L L L + S + +S L L +N+S I + + ++GL
Sbjct: 136 NNEILKSIGEMKQLIKLYLVKNGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLK 195
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L L++ I G+ ++ +T LT L ++ I + L K R L
Sbjct: 196 QLTELDISNNGIGYEGVLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQL 248
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
+ D+ + I+ + L ++D+S +++ GL+ L + NL+ L F C Q+S E +
Sbjct: 62 IRDEGVKSISEKMDQLTNLDISFVGISEKGLVPLVEMKNLKILAFYDC-QLSTKQAETIS 120
Query: 104 GLSNLTSLSFRR---NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ +T L NN I +K+ + L+KL L +
Sbjct: 121 KMKQITELDISYNLTNNEI----LKSIGEMKQLIKLYLVK-------------------- 156
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
N IT ++ +S L L L IS +++ + G+ Y+ GL++LT L++ +
Sbjct: 157 -----NGITSHQVEIISQLKQLTVLNISENEIRNEGVVYISGLKQLTELDISNNGIGYEG 211
Query: 221 LDSLSALGSLFYLNLNRCQLSD------DGCEKFSRLT 252
+ S+ + L L++ + + DG ++F +L
Sbjct: 212 VLSICKMTQLTKLSIYNNPIPEEALRILDGMKQFRQLV 249
>gi|219821381|gb|ACL37832.1| internalin A [Listeria monocytogenes]
gi|219821384|gb|ACL37834.1| internalin A [Listeria monocytogenes]
Length = 741
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +K++D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKLSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 118/252 (46%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKLSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 250
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 251 NISPLAGLTALT 262
>gi|297808737|ref|XP_002872252.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297318089|gb|EFH48511.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
Length = 642
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 132/439 (30%), Positives = 223/439 (50%), Gaps = 39/439 (8%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQG 123
++D GL + CSNL + +C++ISD G++ L +GL +L +S+ + IT
Sbjct: 159 LSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKMCKGLKSL-DVSYLK---ITNDS 214
Query: 124 MKAFAGLINLVKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLT 180
+++ A L+ L LD+ C I GL L+ G L+ +++ C ++ S + + G
Sbjct: 215 IRSIALLLKLEVLDMVSCPLIDDAGLQFLENGSPSLQEVDVTRCERVSLSGLISIVRGHP 274
Query: 181 NLKSLQIS--CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNR 237
+++ L+ S S+V+ S + Y+K L+ L + ++G V+ + L +L S+ SL + L+R
Sbjct: 275 DIQLLKASHCVSEVSGSFLQYIKALKHLKTIWIDGAHVSDSSLVTLSSSCRSLVEIGLSR 334
Query: 238 C-QLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQ-VGSSG 292
C ++D G F+R NL++LNL CG + D + + C NL+ L+L + G
Sbjct: 335 CVDVTDIGMMGFARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLETLKLESCHLITEKG 394
Query: 293 LRHLSGLTN-LESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LT 348
L+ L + L+ ++L+ G++D L ++ S+L+ L L I+D G+ + S +
Sbjct: 395 LQSLGCYSKLLQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCS 454
Query: 349 GLTHLDLFG-ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLS 404
L LDL+ A D G A L R K+L L C LTD GV+ I+ L L+ L L
Sbjct: 455 KLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYC-CELTDTGVEQIRQLELLSHLELR 513
Query: 405 QNCNLTDKTLELIS-GLTGLVSLNVS-NSRITSAGLRHLKPL-KNLRSLTLESCKVT--- 458
N+T L I+ G L L++ I +G L KNLR + L +C V+
Sbjct: 514 GLKNITGVGLAAIACGCKKLGYLDLKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTA 573
Query: 459 ----ANDIKRLQSRDLPNL 473
+++ R+Q DL +L
Sbjct: 574 LCMLMSNLSRVQDVDLVHL 592
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 112/458 (24%), Positives = 197/458 (43%), Gaps = 90/458 (19%)
Query: 82 NLQSLDFNFCIQISDG-----GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-LVK 135
NL SLD + C ++ D L+ + SL+ R+ A+ A+G++ A + + L +
Sbjct: 66 NLSSLDLSVCPKLDDDVVLRLALDGTVSTLGIKSLNLSRSTAVRARGLETLARMCHALER 125
Query: 136 LDLERCT----RIHGGLVNLKGLMKLE-----------------------SLNIKWCNCI 168
+D+ C R L + GL +L+ +++KWC I
Sbjct: 126 VDVSHCWGFGDREAAALSSAVGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCMEI 185
Query: 169 TDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP------------ 215
+D + L + LKSL +S K+T+ I + L KL +L++ CP
Sbjct: 186 SDLGIDLLCKMCKGLKSLDVSYLKITNDSIRSIALLLKLEVLDMVSCPLIDDAGLQFLEN 245
Query: 216 ---------VTAACLDSLSALGSLF-------YLNLNRC--QLSDDGCEKFSRLTNLESL 257
VT SLS L S+ L + C ++S + L +L+++
Sbjct: 246 GSPSLQEVDVTRCERVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLQYIKALKHLKTI 305
Query: 258 NLDSCGIGDEGLVNLTGLCN-------LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+D + D LV L+ C +C++++D +G G NL+++NL+
Sbjct: 306 WIDGAHVSDSSLVTLSSSCRSLVEIGLSRCVDVTD--IGMMGFAR--NCLNLKTLNLACC 361
Query: 311 G-ISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLTH----LDLFGARITDS 363
G ++D ++ +A +L++L L++ IT+ GL +L + L D +G + D
Sbjct: 362 GFVTDVAISAVAQSCRNLETLKLESCHLITEKGLQSLGCYSKLLQELDLTDCYG--VNDR 419
Query: 364 GAAYLRNFKNLRSLE--ICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS-G 419
G Y+ NL+ L+ +C ++D G+ HI S L L+L + D L +S G
Sbjct: 420 GLEYISKCSNLQRLKLGLC-TNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRG 478
Query: 420 LTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCK 456
L L +S +T G+ ++ L+ L L L K
Sbjct: 479 CKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLK 516
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 98/239 (41%), Gaps = 65/239 (27%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
V D GL ++ CSNLQ L C ISD G+ H+ G K
Sbjct: 416 VNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHI--------------------GSKCS- 454
Query: 129 GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
L++LDL RC GL L +G L L + +C +TD+ ++ + L L L+
Sbjct: 455 ---KLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLE 511
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--- 243
L+GL+ +T + L + C L YL+L C+ DD
Sbjct: 512 -------------LRGLKNITGVGLAA--IACGC-------KKLGYLDLKLCENIDDSGF 549
Query: 244 -GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLT 300
FS+ NL +NL +C + D L C+ +S+ ++V L HLS +T
Sbjct: 550 WALAYFSK--NLRQINLCNCSVSDTAL----------CMLMSNLSRVQDVDLVHLSRVT 596
>gi|291239173|ref|XP_002739507.1| PREDICTED: F-box and leucine-rich repeat protein 20-like
[Saccoglossus kowalevskii]
Length = 794
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 208/493 (42%), Gaps = 113/493 (22%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQDL + + GVND M IA S LL +++S +++ D+ L L + C+NLQ L +C
Sbjct: 319 LQDLNISECSGVNDDMMKDIAEGCSILLYLNISHTNIADASLRVLSRCCANLQYLSLAYC 378
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
+ SD GL++L RG L L IT +G + + E C+ I
Sbjct: 379 KRFSDKGLQYLSHSRGCRKLIYLDLSGCTQITQEGYRNMS----------EGCSNIQSIF 428
Query: 149 VNLKGLMKLESLNIKWCNC-------------ITDSDMKPLSGLTNLKSLQISCS-KVTD 194
+N +K E L+ C ++DS +K L+ L+ +++ + +++D
Sbjct: 429 LNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKIRMEGNNRISD 488
Query: 195 SGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRL 251
GI +L K L + L CP +T L SLS ++ LN+ C ++SD G +
Sbjct: 489 LGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRISDSGVRQMVE- 547
Query: 252 TNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
G G +NLT C+ +SD + LR + NL +
Sbjct: 548 -------------GPSGPKIRELNLTN-----CVRVSDVSI----LRIMQKCHNLSYASF 585
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
F ITD G+ L S+ L +D+ G +TDSG A
Sbjct: 586 CF-----------------------CEHITDAGVELLGSMPSLMSVDISGCNVTDSGLAS 622
Query: 368 LRNFKNLRSLEICG-GGLTDAGVKH-----------------------IKDLS----SLT 399
L N L + I +TD G++ IK+L+ L
Sbjct: 623 LGNNPRLLDVTIAECYQITDLGIQKFAQQCRDLERLDVSHCSSLTDSAIKNLAFCCRRLV 682
Query: 400 LLNLSQNCNLTDKTLELISGLTG-LVSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK 456
+LNL+ LTD +++ +SG+ L SL++S ++ LR+L K K ++ L + C+
Sbjct: 683 VLNLTGCQLLTDLSIQYLSGVCHYLHSLDISGCVHVSDKSLRYLRKGCKRIKVLVMLYCR 742
Query: 457 -VTANDIKRLQSR 468
VT +LQ +
Sbjct: 743 NVTKTAYLKLQGK 755
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 202/458 (44%), Gaps = 101/458 (22%)
Query: 22 EVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS-VDLSG-----SDVTDSGLI 75
+ +++ F C + DL G+ V W + +Q SSL S +DLS +D T S LI
Sbjct: 239 KAAIKIFSFCDIVDL--GRCAMVCRSWK--MITQTSSLWSRLDLSTVRNRVTDQTVSTLI 294
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
H C + I ++ LRG ++L SF NL
Sbjct: 295 H--KCRP-------YLIHLN------LRGCAHLKKPSF------------------NLQD 321
Query: 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQIS-CSK 191
L++ C+ ++ ++ +G L LNI N I D+ ++ LS NL+ L ++ C +
Sbjct: 322 LNISECSGVNDDMMKDIAEGCSILLYLNISHTN-IADASLRVLSRCCANLQYLSLAYCKR 380
Query: 192 VTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+D G+ YL +G +KL L+L GC + + Y N++ +GC
Sbjct: 381 FSDKGLQYLSHSRGCRKLIYLDLSGC----------TQITQEGYRNMS------EGC--- 421
Query: 249 SRLTNLESLNL-DSCGIGDEGLVNLTGLC-NLKCLELSDT-QVGSSGLRHLSGLTNLESI 305
+N++S+ L D+ + DE L +T C N++ + L T + S ++ L+ L+ I
Sbjct: 422 ---SNIQSIFLNDNNTLKDECLSAVTSKCHNIRSMSLLGTPHLSDSAIKTLALNRRLQKI 478
Query: 306 NLSFTG-ISDGSLRKLAGL-SSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFG-ARIT 361
+ ISD ++ LA L+ + L D ++TDT L +L++ ++ L++ RI+
Sbjct: 479 RMEGNNRISDLGIKHLAKYCHDLRHVYLSDCPRLTDTALKSLSNCRNVSVLNIADCVRIS 538
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGL 420
DSG + + G + + + + +S +++L + Q C NL+ +
Sbjct: 539 DSGVRQMVEGPS-------GPKIRELNLTNCVRVSDVSILRIMQKCHNLSYASFCFCE-- 589
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
IT AG+ L + +L S+ + C VT
Sbjct: 590 -----------HITDAGVELLGSMPSLMSVDISGCNVT 616
>gi|371942144|gb|AEX60884.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|168700133|ref|ZP_02732410.1| hypothetical protein GobsU_11435 [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 219 ACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
A + L+AL L LNL R +++D G ++ + L L +L+L G+ D G+ L+GL
Sbjct: 6 AGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLKG 65
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L LEL T++ +G++ L+ L NL ++L T ++D ++L+GL+ L +L+L Q+T
Sbjct: 66 LTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQVT 125
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSG 364
D G+ ALT+LTGLT LDL G +TD+G
Sbjct: 126 DAGVKALTALTGLTTLDLHGTGVTDAG 152
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 314 DGSLRKLAGLSS-LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
D +++LA L+ L +LNL ++TD G+ L +L LT+LDL G +TD+G L K
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L LE+ +TDAGVK + L +L L+L +TD + +SGL LV+L++SN++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLG-GTKVTDAGAKELSGLNFLVTLDLSNTQ 123
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 471
+T AG++ L L L +L L VT +K L + LP
Sbjct: 124 VTDAGVKALTALTGLTTLDLHGTGVTDAGLKELNAA-LP 161
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 266 DEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
D G+ L L L L L T+V G++ L+ L L +++L TG++D +++L+GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
L L L + +ITD G+ L +L L HLDL G ++TD+GA L L +L++ +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 385 TDAGVK 390
TDAGVK
Sbjct: 125 TDAGVK 130
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 170 DSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
D+ +K L+ L L +L + ++VTD G+ L L+ LT L+L G VT A + LS L
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L L L +++D G ++ + L NL L+L + D G L+GL L L+LS+TQV
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
+G++ L+ LT L +++L TG++D L++L
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 242 DDGCEKFSRLTN-LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
D G ++ + L L +LNL + D G+ L L L L+L T V +G++ LSGL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
L + L T I+D +++LA L +L L+L ++TD G L+ L L LDL ++
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
TD+G L L +L++ G G+TDAG+K +
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 194 DSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
D+G+ L L K LT LNL VT + L+AL +L L+L ++D G ++ S L
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGTGVTDAGVKELSGLK 64
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L L L S I D G+ L L NL L+L T+V +G + LSGL L +++LS T +
Sbjct: 65 GLTRLELRSTKITDAGVKELAALKNLNHLDLGGTKVTDAGAKELSGLNFLVTLDLSNTQV 124
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+D ++ L L+ L +L+L +TD GL L +
Sbjct: 125 TDAGVKALTALTGLTTLDLHGTGVTDAGLKELNA 158
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 96 DGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
D G++ L L+ LT+L+ RR +T G+K A L L LDL GG
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTR-VTDVGVKELAALKALTNLDL-------GG------- 49
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+TD+ +K LSGL L L++ +K+TD+G+ L L+ L L+L G
Sbjct: 50 -----------TGVTDAGVKELSGLKGLTRLELRSTKITDAGVKELAALKNLNHLDLGGT 98
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
VT A LS L L L+L+ Q++D G + + LT L +L+L G+ D GL L
Sbjct: 99 KVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKEL 156
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 46 DKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
D + +A+ L +++L + VTD G+ L L +LD ++D G++ L GL
Sbjct: 5 DAGVKELAALNKGLTTLNLRRTRVTDVGVKELAALKALTNLDLGGT-GVTDAGVKELSGL 63
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
LT L R + IT G+K A L NL LDL GG
Sbjct: 64 KGLTRLELR-STKITDAGVKELAALKNLNHLDL-------GG------------------ 97
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD+ K LSGL L +L +S ++VTD+G+ L L LT L+L G VT A L L+
Sbjct: 98 TKVTDAGAKELSGLNFLVTLDLSNTQVTDAGVKALTALTGLTTLDLHGTGVTDAGLKELN 157
Query: 226 A 226
A
Sbjct: 158 A 158
>gi|441473145|emb|CCQ22899.1| Internalin-A [Listeria monocytogenes N53-1]
Length = 455
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|219821354|gb|ACL37814.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 40 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 93
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 94 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 145
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 146 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 190
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 191 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 233
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + +AGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 234 SGLTKLTELKLGANQISN--ISPIAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 289
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 290 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 336
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 337 ISDLTPLANL----TRITQLGLN 355
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 123/269 (45%), Gaps = 53/269 (19%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 32 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLTNLT 87
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 88 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 141
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 142 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 200
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---- 435
G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 201 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISNISPI 255
Query: 436 AG-------------LRHLKPLKNLRSLT 451
AG L + P+ NL++LT
Sbjct: 256 AGLTALTNLELNENQLEDISPISNLKNLT 284
>gi|150371828|dbj|BAF65703.1| internalin A [Listeria monocytogenes]
Length = 526
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like
[Cucumis sativus]
Length = 661
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 199/439 (45%), Gaps = 43/439 (9%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALQRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLL 209
G L+ LN+ + + IT K L + L+S+++ C +T SG+ L + L L
Sbjct: 285 IIGSEDLQKLNLSYGSSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKPLXNWRASLKEL 344
Query: 210 NLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLSDDGC--EKFSRLTNLESLNLDSCG-I 264
+L C VT CL L L L++ C+ G S + L SL ++SC +
Sbjct: 345 SLSKCAGVTDECLSILVQKHKQLRKLDITCCRKITYGSINSITSSCSFLVSLKMESCSLV 404
Query: 265 GDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLA- 321
E V + C L+ L+L+D ++ + GL+ +S + L + L I+D L +A
Sbjct: 405 PREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRLSVLKLGICLNINDDGLCHIAS 464
Query: 322 GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRS 376
+K L+L + ITD G+AA G L++ + +ITDS L NL++
Sbjct: 465 ACPKIKELDLYRSTGITDRGIAATAG--GCPALEMINIAYNDKITDSSLISLSKCLNLKA 522
Query: 377 LEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRI 433
LEI G ++ G+ I LT+L++ + N+ D L L L +N+S +
Sbjct: 523 LEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQINLSYCSV 582
Query: 434 TSAGLRHLKPLKNLRSLTL 452
T GL L + LR++T+
Sbjct: 583 TDVGLLSLASINCLRNMTI 601
>gi|27574254|pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
gi|27574256|pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574257|pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
gi|27574258|pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 121
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 173
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 174 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 218
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 219 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 261
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 262 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 317
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 318 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 364
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 365 ISDLTPLANL----TRITQLGLN 383
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 115
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 116 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 167
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 223
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 224 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 278
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 279 -----NISPLAGLTALT 290
>gi|313485040|gb|ADR52996.1| InlA [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|406830743|ref|ZP_11090337.1| hypothetical protein SpalD1_03864 [Schlesneria paludicola DSM
18645]
Length = 304
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 264 IGDEGLVNLTGLCNLKCLEL---SDTQVGSSGLRHLSGLTNLESINLSFTGISD------ 314
+ DEG L L L +E DT++ + LR L G +L+ +++SF ISD
Sbjct: 58 VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAKISDDSAKLL 117
Query: 315 GSLRKLA-------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
G+LR L L+SLK L L R D + L + L L +
Sbjct: 118 GTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAMEELRRMPYLKTLTV 177
Query: 356 FGARITDSGAAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCNLTDKT 413
++D+G A LR K+LR+L I G +T+ GV+H LS L L +L N+TDK
Sbjct: 178 RSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRH---LSELDLADLDITYLNVTDKE 234
Query: 414 LELISGLTGLVSLN-VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
L+ + GL L VS +++T + L L L+ L + K++ I +L+ R LPN
Sbjct: 235 LKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQLE-RALPN 293
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 69 VTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLT--SLSFRRNNAITAQGM 124
VTD G LK+ L +++F ++ L L+G +L S+SF + I+
Sbjct: 58 VTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLSISFAK---ISDDSA 114
Query: 125 KAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
K L +L L+L IH G + NL L +L +L+ + + D M+ L +
Sbjct: 115 KLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKEL-TLSDRLAD---DPAMEELRRMP 170
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLN-LEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
LK+L + V+D+G+A L+ ++ L L L G VT + LS L L L++
Sbjct: 171 YLKTLTVRSVFVSDAGLASLRQVKSLRNLRILLGPKVTEEGVRHLSEL-DLADLDITYLN 229
Query: 240 LSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
++D + + L+ L L S + DE + L+ L LK L+++D ++ +G+ L
Sbjct: 230 VTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFLSELSELKRLDIADAKLSKAGIGQLE 288
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE--- 378
G S+ + NL RQ+TD G AL L L ++ G T+ A LR + RSL+
Sbjct: 46 GPVSVVTYNL--RQVTDEGNRALKELFELPAIEFLGTGDTELQPATLRALQGKRSLKRLS 103
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I ++D K + L SL +L L + K L + LT L L +S+ +
Sbjct: 104 ISFAKISDDSAKLLGTLRSLEVLELRAQVEIHPKVLGEVFNLTSLKELTLSDRLADDPAM 163
Query: 439 RHLKPLKNLRSLTLESCKVT 458
L+ + L++LT+ S V+
Sbjct: 164 EELRRMPYLKTLTVRSVFVS 183
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+SL + LS D + L+ L++L + +SD GL LR + +L +L
Sbjct: 146 TSLKELTLSDRLADDPAMEELRRMPYLKTLTVR-SVFVSDAGLASLRQVKSLRNLRILLG 204
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T +G++ + L +L LD+ L +L+ L+ L + +TD + L
Sbjct: 205 PKVTEEGVRHLSEL-DLADLDITYLNVTDKELKSLRKFKGLKGLRLVSAAKVTDEAVPFL 263
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLK 201
S L+ LK L I+ +K++ +GI L+
Sbjct: 264 SELSELKRLDIADAKLSKAGIGQLE 288
>gi|320167107|gb|EFW44006.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 624
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N+IT+ AF GL L L L+ N IT
Sbjct: 68 NSITSISANAFTGLTALTYLSLQY-------------------------NQITGIPAGTF 102
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+GLT L +L + +++T GL LT L+L+ VT+ + + L +L L+L
Sbjct: 103 TGLTALTALFFAYNQITSIPADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLG 162
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++ + F+ LT L +L+L + I TGL L CL Q+ S
Sbjct: 163 PNQITSIPADTFTGLTALTTLSLQNNQITSISGTAFTGLTALTCLYFGSNQITSIPAGAF 222
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+G+T+L ++L I+ S AGL++L L+L +IT + A T LTGLT L L
Sbjct: 223 TGMTSLTYLSLYLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLD 282
Query: 357 GARITDSGAAYLRNFKNLRSLEI 379
G +IT ++ N L +L +
Sbjct: 283 GNQITSIPSSSFTNLTALTALAL 305
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 113/268 (42%), Gaps = 1/268 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N IT +GLT L L + +++T GL LT L +T+ D+ +
Sbjct: 68 NSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFT 127
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L SL YL+L Q++ F+ LT L SL+L I TGL L L L +
Sbjct: 128 GLTSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQN 187
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
Q+ S +GLT L + I+ G++SL L+L +IT A
Sbjct: 188 NQITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFA 247
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
LT LT+L LF +IT L L + G +T +L++LT L L Q
Sbjct: 248 GLTALTYLSLFNNKITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALAL-Q 306
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRI 433
N +T L GL ++L+ N +
Sbjct: 307 NNPITTLPPGLFKGLPNGLALSNPNPYL 334
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 114/260 (43%), Gaps = 9/260 (3%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T+ ++ + L +L YL+L Q++ F+ LT L +L I TGL
Sbjct: 70 ITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIPADTFTGL 129
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L L L + QV S +GLT L S++L I+ GL++L +L+L Q
Sbjct: 130 TSLTYLSLQNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALTTLSLQNNQ 189
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
IT A T LT LT L +IT A +L L + +T L
Sbjct: 190 ITSISGTAFTGLTALTCLYFGSNQITSIPAGAFTGMTSLTYLSLYLNKITSISANAFAGL 249
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
++LT L+L N +T + +GLTGL L + ++ITS L L +L L++
Sbjct: 250 TALTYLSLFNN-KITSIPVGAFTGLTGLTDLYLDGNQITSIPSSSFTNLTALTALALQN- 307
Query: 456 KVTANDIKRLQS---RDLPN 472
N I L + LPN
Sbjct: 308 ----NPITTLPPGLFKGLPN 323
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 122/287 (42%), Gaps = 12/287 (4%)
Query: 166 NCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-----GCPVTAA 219
NC S SG+ T+ L + + +T GL LT L+L+ G P A
Sbjct: 43 NCYGQSLTAIPSGIPTHTTQLTLDLNSITSISANAFTGLTALTYLSLQYNQITGIP--AG 100
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
L+AL +LF+ Q++ + F+ LT+L L+L + + TGL L
Sbjct: 101 TFTGLTALTALFFA---YNQITSIPADTFTGLTSLTYLSLQNNQVTSISGTAFTGLTALT 157
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L Q+ S +GLT L +++L I+ S GL++L L + QIT
Sbjct: 158 SLSLGPNQITSIPADTFTGLTALTTLSLQNNQITSISGTAFTGLTALTCLYFGSNQITSI 217
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
A T +T LT+L L+ +IT A L L + +T V L+ LT
Sbjct: 218 PAGAFTGMTSLTYLSLYLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLT 277
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
L L N +T + LT L +L + N+ IT+ K L N
Sbjct: 278 DLYLDGN-QITSIPSSSFTNLTALTALALQNNPITTLPPGLFKGLPN 323
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L LD IT A T LT LT+L L +IT A L +L +T
Sbjct: 63 LTLDLNSITSISANAFTGLTALTYLSLQYNQITGIPAGTFTGLTALTALFFAYNQITSIP 122
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
L+SLT L+L QN +T + +GLT L SL++ ++ITS L L
Sbjct: 123 ADTFTGLTSLTYLSL-QNNQVTSISGTAFTGLTALTSLSLGPNQITSIPADTFTGLTALT 181
Query: 449 SLTLESCKVTA 459
+L+L++ ++T+
Sbjct: 182 TLSLQNNQITS 192
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ + GL+ LT+LS + NN IT+ AF GL L L + T I G
Sbjct: 165 QITSIPADTFTGLTALTTLSLQ-NNQITSISGTAFTGLTALTCLYFGSNQITSIPAGA-- 221
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
G+ L L++ + N IT +GLT L L + +K+T + GL LT L
Sbjct: 222 FTGMTSLTYLSL-YLNKITSISANAFAGLTALTYLSLFNNKITSIPVGAFTGLTGLTDLY 280
Query: 211 LEGCPVTAACLDSLSALGSLFYLNL 235
L+G +T+ S + L +L L L
Sbjct: 281 LDGNQITSIPSSSFTNLTALTALAL 305
>gi|255028812|ref|ZP_05300763.1| internalin A [Listeria monocytogenes LO28]
Length = 502
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 240
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 241 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 283
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 284 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 339
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 340 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 386
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 387 ISDLTPLANL----TRITQLGLN 405
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 85 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 137
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 138 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 189
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 190 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 245
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 246 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 300
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 301 -----NISPLAGLTALT 312
>gi|167861930|gb|ACA05664.1| InlA [Listeria monocytogenes]
gi|167862036|gb|ACA05717.1| InlA [Listeria monocytogenes]
gi|194239408|emb|CAQ76844.1| internalin A [Listeria monocytogenes]
gi|222543296|gb|ACM66668.1| internalin A [Listeria monocytogenes]
gi|298359976|gb|ADI77567.1| internalin A [Listeria monocytogenes]
gi|298360582|gb|ADI77870.1| internalin A [Listeria monocytogenes]
gi|298360712|gb|ADI77935.1| internalin A [Listeria monocytogenes]
gi|298360716|gb|ADI77937.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 148/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L + I D + L L NL LELS + S + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISAL 182
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLTNL+ + F G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQL---FFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|313485081|gb|ADR53011.1| InlA [Listeria monocytogenes]
Length = 800
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 148/335 (44%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 128
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L + I D + L L NL LELS + S + L
Sbjct: 129 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISAL 182
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLTNL+ + F G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 183 SGLTNLQQL---FFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 237
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 238 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|12581504|gb|AAG59625.1| GU1 [Trypanosoma brucei]
gi|261333153|emb|CBH16148.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 846
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 217/479 (45%), Gaps = 52/479 (10%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSD- 242
L ++ + VT+ GI+ L L +++ E C +T L+ L L +L + ++ L+D
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQVVADQMNLTDI 595
Query: 243 ---DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSG 298
G R+T ES L G V L L+ L L + + ++G+R L+
Sbjct: 596 GGLTGAPSLRRVTLNESKRL--------GTVGEVRLPYLQELSLRKSTISNAGIRSLLAS 647
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG- 357
+L+ +++ S L L+ L +L+ L L ++T + + S L L +
Sbjct: 648 CRSLQHLDMQHCH-SVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC 706
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
A ITD L ++L +++ +T G+K + +L LNLS+ +T+ + +
Sbjct: 707 ADITDVNC--LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN--VNCL 762
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
L L L++ + +T G+ L L +L L C N ++RL S LP+L F
Sbjct: 763 GKLPFLRELHLEKTNVTDKGIAGLSNCIQLETLALTKCSRITN-VERLHS-SLPHLEEF 819
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 206/438 (47%), Gaps = 43/438 (9%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGQCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
A L +L+ C L+D C L NL++L+L + +EG+ +L +L+ +++S
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKL-------------AGLS 324
+ + + L L L NL+ + ++D SLR++ L
Sbjct: 566 ECCL-ITHLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVRLP 624
Query: 325 SLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG 382
L+ L+L I++ G+ + L S L HLD+ +T+ A L NLR L +
Sbjct: 625 YLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRELLLRNI 682
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+T + HI +L L +++ ++TD + +S L L +++S + +T+ G++ L
Sbjct: 683 RVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTEGIKGLS 740
Query: 443 PLKNLRSLTLESCKVTAN 460
LR L L C+ N
Sbjct: 741 KCYALRKLNLSECRYVTN 758
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 184/418 (44%), Gaps = 44/418 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D GC F L+ L L C + D + L L L+ L+LS T V S L L
Sbjct: 356 WVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLR 413
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L +N+++ + + S L+ L LK L+L I + L + GLT L L
Sbjct: 414 ACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSGTDIGEQNLDPIGQCEGLTFL-LL 470
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ +L + L L+ G+ DA V + L L+ LTD ++
Sbjct: 471 KDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKC 528
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
+ GL L +L+++ + +T+ G+ L +L + + E C +T + R LPNL
Sbjct: 529 LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFL----RPLPNL 582
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 137/317 (43%), Gaps = 54/317 (17%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL ++ NC ++S+ L +T++ L + D+ YL G+ L +L
Sbjct: 156 LESLTVR--NCFSESEAS-LCSVTSI--LNSRATNRRDARTFYLSGVTSLGVLR------ 204
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS--------------- 261
CL SL+ + LS+ F TNLE + +DS
Sbjct: 205 ---CLRSLTLFAT---------PLSNQIMSYFCECTNLERVVVDSCCGLVSLECFAALQR 252
Query: 262 --------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
C I DEGL ++ +L+ + L D + L L L NL ++ +S I
Sbjct: 253 LTHLSVLNCTITDEGLPPISKCFSLQYVML-DNCMKLRSLNCLGSLRNLRTLIVSRNRIP 311
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ ++ L L L+ L T + ++SL L LDL + D+G A + +
Sbjct: 312 EEGVQGLRKLRDLEVLRFSVFN-RPTAVEFISSLGSLVELDLRDNWVGDAGCASFVHCRQ 370
Query: 374 LRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L+ L++ C ++D V+ + L+ L L+LS N+ + LE + LV LNV+ R
Sbjct: 371 LQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHT-NVRSRWLESLRACRYLVELNVAYCR 427
Query: 433 --ITSAGLRHLKPLKNL 447
+ + L L+ LK+L
Sbjct: 428 DVVEVSFLSELRLLKHL 444
>gi|223698952|gb|ACN19208.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL--FFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ + F G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQL---FFGNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|261331843|emb|CBH14837.1| leucine-rich repeat protein (LRRP, pseudogene),putative
[Trypanosoma brucei gambiense DAL972]
Length = 1517
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 149/341 (43%), Gaps = 58/341 (17%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L +N W + Q L LS + +TD + H C NL +LD +FC
Sbjct: 624 ALNELNLSDCFEINAGWEALEKLQ--QLHVAILSNTHITDGDISHFSKCKNLVTLDLSFC 681
Query: 92 IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
++ D + LSN+T+L L+L C++I GL L
Sbjct: 682 DKLLD-----VTALSNITTLE----------------------DLNLSNCSKIRKGLSVL 714
Query: 152 KGLMKLESLNIKWC----------------------NCITDSDMKPLSGLTNLKSLQIS- 188
L +L LN+K NC D+KPLS L L+ L +
Sbjct: 715 GELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCKGFGDVKPLSNLVTLEELNLHY 774
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEK 247
C KVT SG+ L L +L +L+L L+++ ++ L LNL+ C+
Sbjct: 775 CDKVT-SGMGTLGSLPQLRVLDLGRTQADNNSLENICTSSIPLVLLNLSHCK-KITSIST 832
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ LT LE LN+D+C G L L+ LS+T++ +R++S +L ++NL
Sbjct: 833 IASLTALEELNIDNCCNVTSGWNVFGTLHQLRVATLSNTRINDENIRYVSECKSLNTLNL 892
Query: 308 SF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
+F I+D + L+ ++ L+ LNLD G+ L L
Sbjct: 893 AFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKL 931
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 187/419 (44%), Gaps = 42/419 (10%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-------GGLEHL---------RGL 105
+DLSG+ V D+ L L DC +L+ L+ ++CIQ++D E L RG+
Sbjct: 353 LDLSGAPVEDNFLKDLCDCGSLERLNLSYCIQLTDINPLSNAAATEELNLNGCRRITRGM 412
Query: 106 SNLTSLS-----FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
+ L ++ ++ + + LVK+ L+ C G + L ++ LE L
Sbjct: 413 GVVWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGF-GDMTLLSSIVTLEEL 471
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
NI+ C + +SG+ L +L +T G+ + + + +LN++ +++
Sbjct: 472 NIQKC-------VDIISGVGCLGTLPY-LVYLTWCGLPWYTTVPR--VLNIKEAHISSLD 521
Query: 221 LDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+ A SL LN+ LS+ E + + LE L+L C D + L LK
Sbjct: 522 FTGICASKSLLQLNMESITGLSN--VEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLK 579
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L+LS T + LR L + S+NLS ++ ++ L +L LNL +
Sbjct: 580 MLDLSGTNTDNESLRSLCLSQTMVSLNLSHCW-KMTNMSHISSLEALNELNLSDCFEINA 638
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSS 397
G AL L L L ITD ++ KNL +L++ C L V + ++++
Sbjct: 639 GWEALEKLQQLHVAILSNTHITDGDISHFSKCKNLVTLDLSFCDKLL---DVTALSNITT 695
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L LNLS NC+ K L ++ L L LNV + + + L K+ L+LE+CK
Sbjct: 696 LEDLNLS-NCSKIRKGLSVLGELPRLRVLNVKGVLLEDSVIGSLGNGKSFAKLSLENCK 753
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 166/377 (44%), Gaps = 40/377 (10%)
Query: 98 GLEHLRGLSNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLM 155
G ++ LSN+ +L ++A + +F+ L L L+L + T I+G + N+
Sbjct: 1006 GFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLRVLNL-KYTDINGDVTKNISESK 1064
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ C +TD + LS L+ L+ L IS + G L L L + L
Sbjct: 1065 SLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAILSDTK 1122
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+TA + LS+ +L L RC+ D + ++ +LE L + +C G +GL L
Sbjct: 1123 ITAKDIVCLSSCKTLVKLKFFRCEELSDVTVVY-KIQSLEELIVKNCSDGLKGLNAPGTL 1181
Query: 276 CNLKCLELSDTQ----VGSSG-----LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L+ + + V S G LR++ G SD S+ + SL
Sbjct: 1182 PRLRFFASAKCERMLLVHSHGCVFLLLRNVRG--------------SDISVESIGTSKSL 1227
Query: 327 KSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L ++ +TDT L+ +T L L L G L L+SL++ GL+
Sbjct: 1228 VRLTIEVGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGTLEKLPRLKSLDL---GLS 1282
Query: 386 DAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
D + D+ S+T LNLS N LTD + IS LT L LN+ ++G L
Sbjct: 1283 DISNSTLNDICLSRSITSLNLSNNYELTD--ISHISNLTALEELNLRGCYHITSGWEALS 1340
Query: 443 PLKNLRSLTLESCKVTA 459
L LR L LES +VT
Sbjct: 1341 ELPRLRVLNLESARVTT 1357
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 193/433 (44%), Gaps = 62/433 (14%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQ 122
LS + +T ++ L C L L F C ++SD + + ++ L L +N + +
Sbjct: 1118 LSDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVTVVYKIQSLEEL----IVKNCSDGLK 1173
Query: 123 GMKAFAGLINLVKLDLERCTRI-----HGG----LVNLKGL-MKLES---------LNIK 163
G+ A L L +C R+ HG L N++G + +ES L I+
Sbjct: 1174 GLNAPGTLPRLRFFASAKCERMLLVHSHGCVFLLLRNVRGSDISVESIGTSKSLVRLTIE 1233
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+TD+ PLS +T+L+ L + G+ L+ L +L L+L ++ + L+
Sbjct: 1234 VGEDLTDT--TPLSDITSLEELSLRECGDNLGGVGTLEKLPRLKSLDLGLSDISNSTLND 1291
Query: 224 LSALGSLFYLNL-NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+ S+ LNL N +L+D S LT LE LNL C G L+ L L+ L
Sbjct: 1292 ICLSRSITSLNLSNNYELTD--ISHISNLTALEELNLRGCYHITSGWEALSELPRLRVLN 1349
Query: 283 LSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
L +V + ++S +L ++N+ + ++D S +A + +L+ L++ G
Sbjct: 1350 LESARVTTRYDGYYISRCKSLVTLNIQLSDMTDASY--IANIKTLEELHIGECDELRWGF 1407
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+AL +L L LDLF +RITD LRN + ++E L
Sbjct: 1408 SALFTLPRLRILDLFMSRITDED---LRNIQPPHTIE---------------------EL 1443
Query: 402 NLSQNCNLTDKT----LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
NLS NL D T ++ I L L+S + R+ G R L L L + +++ V
Sbjct: 1444 NLSYCENLNDITPLGRIKSIKNLHFLLSYDA--RRLREEGFRSLLELPCLSWVGVKNAYV 1501
Query: 458 TANDIKRLQSRDL 470
+++ ++ L+ R L
Sbjct: 1502 SSDILRELRKRRL 1514
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 177/437 (40%), Gaps = 76/437 (17%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
+ + G HL + L L + + ++ + L NL L+L + +
Sbjct: 242 VDNNGARHLFNIGTLEELVIA--DTMQLANIRGISRLTNLKCLELNSTDIDDSCVRRICA 299
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLE 212
+KL L++ CN I D+ P+S L L+ L + SC +T GI L L +L +L+L
Sbjct: 300 CVKLFKLSVSECNNIMDA--TPISQLAALEELNLNSCYHIT-KGIGTLGMLLRLRVLDLS 356
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
G PV L L GSL LNL+ C QL+D S E LNL+ C G+
Sbjct: 357 GAPVEDNFLKDLCDCGSLERLNLSYCIQLTD--INPLSNAAATEELNLNGCRRITRGMGV 414
Query: 272 LTGLCNLKCLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLS 308
+ L L+ L + D VG+ G + LS + LE +N+
Sbjct: 415 VWVLPKLRVLHMKDMHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQ 474
Query: 309 -----FTGISDGSLRKLAGLSSL------------KSLNLDARQITD---TGLAA----- 343
+G+ G L L L L + LN+ I+ TG+ A
Sbjct: 475 KCVDIISGV--GCLGTLPYLVYLTWCGLPWYTTVPRVLNIKEAHISSLDFTGICASKSLL 532
Query: 344 ---LTSLTGLTHLD------------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+ S+TGL++++ L G D+ L N L+ L++ G +
Sbjct: 533 QLNMESITGLSNVEALANILTLEKLSLLGCNGIDAVIGCLGNPPQLKMLDLSGTNTDNES 592
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
++ + ++ LNLS +T+ + IS L L LN+S+ +AG L+ L+ L
Sbjct: 593 LRSLCLSQTMVSLNLSHCWKMTN--MSHISSLEALNELNLSDCFEINAGWEALEKLQQLH 650
Query: 449 SLTLESCKVTANDIKRL 465
L + +T DI
Sbjct: 651 VAILSNTHITDGDISHF 667
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 131/317 (41%), Gaps = 27/317 (8%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
L +LN+ +C ITD + LS +T L+ L + C GI L L K +L+++ C +
Sbjct: 887 LNTLNLAFCKDITD--VTALSKITMLEELNLDCCHNIRKGIETLGKLPKARILSMKECYM 944
Query: 217 TAACLDSLSALGSLFYLNLNRC----------QLSDDG----CEKFSRLTNLESLNLDSC 262
+++ +LG + +LN + L DG C +L LNL+
Sbjct: 945 ETDMRNNVPSLGIVSHLNSWKASQGTYPKHEGMLHGDGYAQQCSILGNSKSLVKLNLER- 1003
Query: 263 GIGDEGLVNLTGLCNLKCLE--LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
G +++ L N+ LE + D + S L L +NL +T I+ + +
Sbjct: 1004 ---SMGFISVKALSNIATLEELVLDHAQEVCCIPSFSCLPRLRVLNLKYTDINGDVTKNI 1060
Query: 321 AGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
+ SL+SLNL + +TD ++ L+SL+ L L++ G L LR +
Sbjct: 1061 SESKSLRSLNLSHCKWVTD--ISVLSSLSTLEELNISECEQIRKGWESLGKLPLLRVAIL 1118
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+T + + +L L + L+D T ++ + L L V N GL
Sbjct: 1119 SDTKITAKDIVCLSSCKTLVKLKFFRCEELSDVT--VVYKIQSLEELIVKNCSDGLKGLN 1176
Query: 440 HLKPLKNLRSLTLESCK 456
L LR C+
Sbjct: 1177 APGTLPRLRFFASAKCE 1193
>gi|290996875|ref|XP_002681007.1| leucine-rich repeat family protein [Naegleria gruberi]
gi|284094630|gb|EFC48263.1| leucine-rich repeat family protein [Naegleria gruberi]
Length = 398
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 162/346 (46%), Gaps = 12/346 (3%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA-QGMKAFAGLINLVK 135
+K NL+SL C I + L+ + +++LT L +T + ++ + + L K
Sbjct: 51 IKMMKNLKSLSIGNC-SIGEEDLKFIGEMNHLTELELCE--CLTGDKDIRPISRMSQLTK 107
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTD 194
L++ + + H L ++ + +L+ L I N I D + LS L L L+I+ + +
Sbjct: 108 LNISKNAKYH--LSDIFDMKQLKILEI-GENFIGDEQAELLSNHLKQLTILRINNNLIHS 164
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE---KFSRL 251
G+ +L L +LT L+L G ++ + L L++N+ G +F L
Sbjct: 165 QGVKHLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGSQFGNL 224
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L SL++ + IGDEG ++ L L L + ++G G R LS L L +++S
Sbjct: 225 FQLTSLSISNNYIGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVLHQLTKLDISTNH 284
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
I D +R LS L L + +I D G ++ + LT L + +I + GA +
Sbjct: 285 IGDEGVRLFKQLSKLTELVVFNNRIGDVGAQLISEIPQLTSLVVSSNQIGNEGAKSISQM 344
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
L+ L I G + D G K + +++ L + + N N++++ +L
Sbjct: 345 SKLKYLSINGNQIGDQGAKLLSEMNQLRRIEVYGN-NISNEIFQLF 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 28/258 (10%)
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
E + NL+SL++ +C IG+E L + + +L LEL + G +R +S ++ L +
Sbjct: 49 EIIKMMKNLKSLSIGNCSIGEEDLKFIGEMNHLTELELCECLTGDKDIRPISRMSQLTKL 108
Query: 306 NLSFTG----------------------ISDGSLRKLAG-LSSLKSLNLDARQITDTGLA 342
N+S I D L+ L L L ++ I G+
Sbjct: 109 NISKNAKYHLSDIFDMKQLKILEIGENFIGDEQAELLSNHLKQLTILRINNNLIHSQGVK 168
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK---HIKDLSSLT 399
L+ L LT LDL G D+ + + + L++L + G + +L LT
Sbjct: 169 HLSKLDQLTELDLSGNAFNDTIGSEIAKMEQLKTLHVNKLARHRMGSRLGSQFGNLFQLT 228
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L++S N + D+ IS LT L L V + I G R L L L L + + +
Sbjct: 229 SLSISNNY-IGDEGANEISNLTQLTELYVHGAEIGYRGARSLSVLHQLTKLDISTNHIGD 287
Query: 460 NDIKRL-QSRDLPNLVSF 476
++ Q L LV F
Sbjct: 288 EGVRLFKQLSKLTELVVF 305
>gi|38154344|gb|AAR12159.1| internalin A [Listeria monocytogenes]
Length = 685
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|298360020|gb|ADI77589.1| truncated internalin A [Listeria monocytogenes]
gi|298360528|gb|ADI77843.1| truncated internalin A [Listeria monocytogenes]
Length = 459
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|223698619|gb|ACN18986.1| truncated internalin A [Listeria monocytogenes]
gi|223698691|gb|ACN19034.1| truncated internalin A [Listeria monocytogenes]
gi|223698706|gb|ACN19044.1| truncated internalin A [Listeria monocytogenes]
gi|223698715|gb|ACN19050.1| truncated internalin A [Listeria monocytogenes]
gi|223698781|gb|ACN19094.1| truncated internalin A [Listeria monocytogenes]
gi|223698784|gb|ACN19096.1| truncated internalin A [Listeria monocytogenes]
gi|223698814|gb|ACN19116.1| truncated internalin A [Listeria monocytogenes]
gi|223698838|gb|ACN19132.1| truncated internalin A [Listeria monocytogenes]
gi|223698844|gb|ACN19136.1| truncated internalin A [Listeria monocytogenes]
gi|223698850|gb|ACN19140.1| truncated internalin A [Listeria monocytogenes]
gi|223698856|gb|ACN19144.1| truncated internalin A [Listeria monocytogenes]
gi|223698880|gb|ACN19160.1| truncated internalin A [Listeria monocytogenes]
gi|223698958|gb|ACN19212.1| truncated internalin A [Listeria monocytogenes]
gi|223698967|gb|ACN19218.1| truncated internalin A [Listeria monocytogenes]
gi|223698970|gb|ACN19220.1| truncated internalin A [Listeria monocytogenes]
gi|223698973|gb|ACN19222.1| truncated internalin A [Listeria monocytogenes]
gi|223698982|gb|ACN19228.1| truncated internalin A [Listeria monocytogenes]
Length = 614
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|145687803|gb|ABP88874.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687809|gb|ABP88877.1| truncated internalin A precursor [Listeria monocytogenes]
gi|194326155|emb|CAQ77236.1| internalin A [Listeria monocytogenes]
gi|294358379|gb|ADE73842.1| truncated InlA [Listeria monocytogenes]
gi|294358381|gb|ADE73843.1| truncated InlA [Listeria monocytogenes]
gi|294358383|gb|ADE73844.1| truncated InlA [Listeria monocytogenes]
gi|294358385|gb|ADE73845.1| truncated InlA [Listeria monocytogenes]
gi|298359890|gb|ADI77524.1| truncated internalin A [Listeria monocytogenes]
gi|298359938|gb|ADI77548.1| truncated internalin A [Listeria monocytogenes]
gi|298359960|gb|ADI77559.1| truncated internalin A [Listeria monocytogenes]
gi|298360012|gb|ADI77585.1| truncated internalin A [Listeria monocytogenes]
gi|371942072|gb|AEX60848.1| truncated internaline [Listeria monocytogenes]
gi|371942094|gb|AEX60859.1| truncated internaline [Listeria monocytogenes]
gi|371942120|gb|AEX60872.1| truncated internaline [Listeria monocytogenes]
gi|371942130|gb|AEX60877.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698700|gb|ACN19040.1| truncated internalin A [Listeria monocytogenes]
Length = 599
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|343423407|emb|CCD18182.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 150/337 (44%), Gaps = 18/337 (5%)
Query: 39 GQYPGVNDKWMDVIASQGS--SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
G +PGV + + GS L ++L + VTD L L L L C +++D
Sbjct: 188 GSFPGVRG-----LGALGSLPRLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRRLTD 242
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
+ L +S+L + + IT +GM F L L L L L L
Sbjct: 243 --VTPLVKISSLQVVDLSDCSGIT-KGMGGFGTLPGLYLLSLTGTALTDEQLQELCASQS 299
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL+IK C +TD + L +T L+ L +S G L++L L + V
Sbjct: 300 LESLSIKRCKLLTDVGV--LGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRV 357
Query: 217 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
T CL ++ L L++ C+ L+D C +++ LE LN++ C D+GL L GL
Sbjct: 358 TNECLCEIAKCTQLVKLSVAGCKKLTDISC--LAQVHTLEDLNVNMCEHIDDGLGVLGGL 415
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ L +S T VG+ LR + LE L I+D S LA SL LNLD
Sbjct: 416 EELRTLRMSSTAVGNDELRLVCKSKTLERSELEGCERITDVS--ALAAAQSLMFLNLDKC 473
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
Q TG+ L L L + L GA +T+ L+ +
Sbjct: 474 QKVVTGVGELGKLPALRVISLQGATVTEDDMKSLKMY 510
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 166/376 (44%), Gaps = 54/376 (14%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+S+L ++ +AI G F + L L L R L +L L LN+
Sbjct: 107 GMSSLEEVALHNASAIVHIG--RFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLT 164
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
C+ +TD ++PL+ + L+ + +S S G+ L L +L LNL+ VT CL +
Sbjct: 165 ECSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLGALGSLPRLRELNLKHTAVTDDCLKT 222
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
LSA +L L L C+ RLT+ + L + +L+ ++L
Sbjct: 223 LSASKTLVRLFLGDCR----------RLTD---------------VTPLVKISSLQVVDL 257
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLA 342
SD + G+ L L ++L+ T ++D L++L SL+SL++ + +TD G+
Sbjct: 258 SDCSGITKGMGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGV- 316
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD---------------- 386
L +T L LD+ G + LRSL + +T+
Sbjct: 317 -LGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQLVKLS 375
Query: 387 -AGVKHIKDLSSL----TLLNLSQN-CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
AG K + D+S L TL +L+ N C D L ++ GL L +L +S++ + + LR
Sbjct: 376 VAGCKKLTDISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDELRL 435
Query: 441 LKPLKNLRSLTLESCK 456
+ K L LE C+
Sbjct: 436 VCKSKTLERSELEGCE 451
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 173/401 (43%), Gaps = 39/401 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD L L +L L+ C +++D +E L + L ++ + +G+ A
Sbjct: 144 VTDDFLCSLTTSGSLTHLNLTECSRLTD--VEPLASIKTLEQVNLS-GSFPGVRGLGALG 200
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L +L+L+ L L L L + C +TD + PL +++L+ + +S
Sbjct: 201 SLPRLRELNLKHTAVTDDCLKTLSASKTLVRLFLGDCRRLTD--VTPLVKISSLQVVDLS 258
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL-SDDGCE 246
CS +T G+ L L LL+L G +T L L A SL L++ RC+L +D G
Sbjct: 259 DCSGIT-KGMGGFGTLPGLYLLSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGVL 317
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
F +T L L++ C G + + L L+ L ++ T+V + L ++ T L +
Sbjct: 318 GF--VTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTRVTNECLCEIAKCTQL--VK 373
Query: 307 LSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
LS G + LA + +L+ LN++ + D GL L L L L + + +
Sbjct: 374 LSVAGCKKLTDISCLAQVHTLEDLNVNMCEHIDDGLGVLGGLEELRTLRMSSTAVGNDEL 433
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ K L E+ G + I D+S+L + L+
Sbjct: 434 RLVCKSKTLERSEL-------EGCERITDVSAL-------------------AAAQSLMF 467
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
LN+ + G+ L L LR ++L+ VT +D+K L+
Sbjct: 468 LNLDKCQKVVTGVGELGKLPALRVISLQGATVTEDDMKSLK 508
>gi|223698748|gb|ACN19072.1| truncated internalin A [Listeria monocytogenes]
gi|223698961|gb|ACN19214.1| truncated internalin A [Listeria monocytogenes]
Length = 491
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 112
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 113 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 168
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 169 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 223
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 -----NISPLAGLTALT 235
>gi|298360724|gb|ADI77941.1| truncated internalin A [Listeria monocytogenes]
Length = 403
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 153/306 (50%), Gaps = 50/306 (16%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITD 362
I+D
Sbjct: 348 FNNISD 353
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GLEYLNNLTQINFSNNQLTDITP-----LKDLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|158298684|ref|XP_318863.4| AGAP009775-PA [Anopheles gambiae str. PEST]
gi|157014003|gb|EAA14468.4| AGAP009775-PA [Anopheles gambiae str. PEST]
Length = 547
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 34/319 (10%)
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH----GGLVNLKGLMKLES 159
GL L ++ RNN IT M+ F G NL++LDL R R+ G +LK L L
Sbjct: 110 GLVRLKTIDLSRNN-ITQLAMENFRGQDNLIELDLSR-NRLDNIASGTFAHLKELKTLHL 167
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
++ N IT+ + + L LK L +S + + D K +Q L +L + GC ++
Sbjct: 168 ID----NSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPEVFKDVQDLKILRVRGCRLSNI 223
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS---CGIGDEGLVNLTGLC 276
+ L L L+L + Q+ E+F L +L++L LD I DE ++ GL
Sbjct: 224 NPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLRLDGNQLSVIIDELFIHQKGLT 283
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------GSLRKLAGLSSLKSLN 330
L++S ++ R L NL ++ S+ +S LR L L+ ++
Sbjct: 284 ---LLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPVCFRPLRNLQTLNISGNIQ 340
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDA 387
LD ++ DT + + ++TGL + D G L F++L +L + G + +
Sbjct: 341 LDLGEMEDT-INVIKNITGLM--------VADMGTLPLNLFSPFRHLSALNLSGNHIDNF 391
Query: 388 GVKHIKDLSSLTLLNLSQN 406
++ I+ L+ L L+LS+N
Sbjct: 392 TLQIIEPLNQLEFLDLSRN 410
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%)
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+F LE L + + G + GL LK ++LS + + + G NL ++
Sbjct: 83 QFQYFKKLEILRIIDANVPSVGDRSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
LS + + + A L LK+L+L IT+ L L HLDL I D
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPE 202
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
++ ++L+ L + G L++ + LS LT L+L QN
Sbjct: 203 VFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQN 242
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 24/325 (7%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
+ KLE L I N + D + GL LK++ +S + +T + +G L L+
Sbjct: 84 FQYFKKLEILRIIDANVPSVGD-RSFWGLVRLKTIDLSRNNITQLAMENFRGQDNLIELD 142
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L + + + L L L+L +++ F L L+ L+L I D
Sbjct: 143 LSRNRLDNIASGTFAHLKELKTLHLIDNSITEFNQRLFLHLAKLKHLDLSYNSIDDLPPE 202
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ +LK L + ++ + + + L++L ++L I + L L++L
Sbjct: 203 VFKDVQDLKILRVRGCRLSNINPQIYNILSHLTELDLGQNQIKFLDKEEFKDLRHLQTLR 262
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
LD Q++ GLT LD+ R+ N NL L+ L+
Sbjct: 263 LDGNQLSVIIDELFIHQKGLTLLDISRNRLAKIADRAFENLANLTFLDASYNKLSHIEPV 322
Query: 391 HIKDLSSLTLLNLSQNCNL----TDKTLELISGLTGLV-------------------SLN 427
+ L +L LN+S N L + T+ +I +TGL+ +LN
Sbjct: 323 CFRPLRNLQTLNISGNIQLDLGEMEDTINVIKNITGLMVADMGTLPLNLFSPFRHLSALN 382
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTL 452
+S + I + L+ ++PL L L L
Sbjct: 383 LSGNHIDNFTLQIIEPLNQLEFLDL 407
>gi|72385461|ref|XP_846398.1| leucine-rich repeat protein (LRRP) [Trypanosoma brucei TREU927]
gi|25956236|emb|CAB95328.2| leucine-rich repeat protein (LRRP), putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1448
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 180/403 (44%), Gaps = 18/403 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G D+G+ L + L+ LD + ++ E LR L + T +S +
Sbjct: 539 TLEKLSLHGCTGIDAGIGCLGNLPQLKMLDLSG----TNTDNESLRSLCLSQTVVSLNLS 594
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C I+ G L+ L +L + I ITD D+
Sbjct: 595 HCWKMTNVSHISSLEALNELNLSNCFGINAGWEALEKLQQLH-VAILSNTHITDRDISHF 653
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S NL +L +S C+K+ D + L + L LNL+ C L L L L LN+
Sbjct: 654 SNCKNLITLDLSFCNKLLD--VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNI 711
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
QL D + L+L++C G GD + L+ L L+ L L +SG+
Sbjct: 712 KGVQLEDSVIVSLGNGNSFVRLSLENCKGFGD--VAPLSNLVTLEELNLHYCDKVTSGMG 769
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTGLTH 352
L L L ++L T + D SL + SS L SLNL + ++IT ++A+ SLT L
Sbjct: 770 TLGRLPQLRVLDLGRTQVDDNSLENICTCSSPLVSLNLSNCKKIT--SISAIASLTALEE 827
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ SG LR + D V+H+ + SL LNL+ ++TD
Sbjct: 828 LNIDNCCNVTSGWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITDV 887
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
T +S +T L LN+ G+ L L R L+++ C
Sbjct: 888 T--ALSKITMLEELNLDCCHNIRKGIETLGTLPKARILSMKEC 928
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 149/327 (45%), Gaps = 40/327 (12%)
Query: 168 ITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
IT D+ LS L L+ C K++D + Y +Q L L + C L++L
Sbjct: 1074 ITAKDIACLSSCKKLVKLKFFQCEKLSDVTVVY--KIQSLEELIVTSCSDGLKGLNALGT 1131
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---L 283
L L + +L + SD E +L L+++ +G+E L ++T L N+ LE L
Sbjct: 1132 LPRLRFHHLRNVRGSDISVESIGTSKSLVRLHIE---VGEE-LTDITPLSNITSLEELSL 1187
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA 342
D + G+ L L L+S++L + ISD +L + S+ SLNLD+ ++TD ++
Sbjct: 1188 RDYRKPPEGVGTLGKLPRLKSLDLGLSRISDSTLYCICLSRSITSLNLDSSWKLTD--IS 1245
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR--SLEICGGGLTDAGVKHIKDLSSLTL 400
+++LT L L+L G SG L LR +LE D G +I L
Sbjct: 1246 HISNLTALEELNLGGCYYITSGWEALSELPRLRVLNLEFTRATTRDGGY-YISRCKYLVT 1304
Query: 401 LNLSQNCNLTD-------KTL---------ELISGLTGLVS------LNVSNSRITSAGL 438
LNL + C++TD KTL EL G + L + LN+ S IT L
Sbjct: 1305 LNL-ELCDMTDASCLANIKTLEELHIGGCDELTQGFSALFTLPQLRILNLICSLITDEDL 1363
Query: 439 RHLKPLKNLRSLTLESCKVTANDIKRL 465
R ++P + L L C V NDI L
Sbjct: 1364 REIQPPHTIEELNLSYC-VELNDITPL 1389
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 175/421 (41%), Gaps = 67/421 (15%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC +L+ L+ ++ IQ++D + LSN T++
Sbjct: 357 SGVPVEDNCLKDLCDCGSLERLNISYRIQLTD-----INPLSNATAIE------------ 399
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 400 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKDVHLSEPSLDSVGTGGPLVKV 449
Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 450 SLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVGCLGTLPYLRVLNIKEAHISSLDFT 509
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ A SL LN+ LS+ E + + LE L+L C D G+ L L LK L
Sbjct: 510 GIGASKSLLQLNMESITGLSN--VEALANILTLEKLSLHGCTGIDAGIGCLGNLPQLKML 567
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLDARQIT 337
+LS T + LR L + S+NLS T +S ++ L +L LNL
Sbjct: 568 DLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTNVS-----HISSLEALNELNLSNCFGI 622
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDL 395
+ G AL L L L ITD ++ N KNL +L++ C L + +I L
Sbjct: 623 NAGWEALEKLQQLHVAILSNTHITDRDISHFSNCKNLITLDLSFCNKLLDVTALSNITTL 682
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L L +C+ K L ++ L L LN+ ++ + + L + L+LE+C
Sbjct: 683 EELNL----DSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIVSLGNGNSFVRLSLENC 738
Query: 456 K 456
K
Sbjct: 739 K 739
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 173/412 (41%), Gaps = 56/412 (13%)
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160
HL + L L+ +T ++ + L NL L+L + + KL L
Sbjct: 251 HLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLELNSTNIDDSCVEEISACAKLSKL 308
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
I CN ITD+ P+S L L+ L +S +T GI L L +L +L+L G PV C
Sbjct: 309 CISKCNNITDA--TPISQLAALEELNLSNCHIT-KGIGTLGMLLRLRMLDLSGVPVEDNC 365
Query: 221 LDSLSALGSLFYLNLN-RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
L L GSL LN++ R QL+D S T +E LNL+ C G+ + L L+
Sbjct: 366 LKDLCDCGSLERLNISYRIQLTD--INPLSNATAIEELNLNGCRRITRGIGVVWALPKLR 423
Query: 280 CLELSDTQ--------VGSSG---------------LRHLSGLTNLESINLSFTGISDGS 316
L + D VG+ G + LS + LE +N+
Sbjct: 424 VLHMKDVHLSEPSLDSVGTGGPLVKVSLDNCAGFGDMTLLSSIVTLEELNIQKCADIISG 483
Query: 317 LRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD----------- 354
+ L L L+ LN+ I+ TG+ A + S+TGL++++
Sbjct: 484 VGCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLNMESITGLSNVEALANILTLEKL 543
Query: 355 -LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
L G D+G L N L+ L++ G + ++ + ++ LNLS +T+
Sbjct: 544 SLHGCTGIDAGIGCLGNLPQLKMLDLSGTNTDNESLRSLCLSQTVVSLNLSHCWKMTN-- 601
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ IS L L LN+SN +AG L+ L+ L L + +T DI
Sbjct: 602 VSHISSLEALNELNLSNCFGINAGWEALEKLQQLHVAILSNTHITDRDISHF 653
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 204/508 (40%), Gaps = 103/508 (20%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
AL +L L G+N W + Q L LS + +TD + H +C NL +LD +FC
Sbjct: 610 ALNELNLSNCFGINAGWEALEKLQ--QLHVAILSNTHITDRDISHFSNCKNLITLDLSFC 667
Query: 92 IQISDGGLEHLRGLSNLTSLS-------------------FRRNNAITAQGMKAFAGLI- 131
++ D + LSN+T+L R + +G++ +I
Sbjct: 668 NKLLD-----VTALSNITTLEELNLDSCSNIRKGLSVLGELPRLCVLNIKGVQLEDSVIV 722
Query: 132 ------NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
+ V+L LE C + G + L L+ LE LN+ +C+ +T S M L L L+ L
Sbjct: 723 SLGNGNSFVRLSLENC-KGFGDVAPLSNLVTLEELNLHYCDKVT-SGMGTLGRLPQLRVL 780
Query: 186 QI--------------------------SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTA 218
+ +C K+T S IA L L++L + N C VT+
Sbjct: 781 DLGRTQVDDNSLENICTCSSPLVSLNLSNCKKITSISAIASLTALEELNIDNC--CNVTS 838
Query: 219 AC-----------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ +S SL LNL C+ D S++T LE
Sbjct: 839 GWNVFGTLHQLRVATLSNTRTNDENVRHVSECKSLNTLNLAFCKDITD-VTALSKITMLE 897
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
LNLD C +G+ L L + L + + +G + S L N +S+ S G
Sbjct: 898 ELNLDCCHNIRKGIETLGTLPKARILSMKECYMGDGYAQQCSILGNSKSLVKLNLERSRG 957
Query: 316 --SLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF- 371
S++ L+ +++L+ L LD AR++ + S + L L + + TD +N
Sbjct: 958 RISVKALSNVATLEELVLDHARKV-----CCIPSFSCLPRLRVLNLKYTDINGDVTKNIS 1012
Query: 372 --KNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K+LRSL + +TD V +N CN K E + L L +
Sbjct: 1013 ESKSLRSLNLSHCKWVTDISVLSSLLTLEELNVNC---CNGIRKGWESLGKLPLLRVAIL 1069
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCK 456
S+++IT+ + L K L L C+
Sbjct: 1070 SDTKITAKDIACLSSCKKLVKLKFFQCE 1097
>gi|71748370|ref|XP_823240.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832908|gb|EAN78412.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 846
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 217/479 (45%), Gaps = 52/479 (10%)
Query: 27 AFRDC-ALQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQ 84
+F C LQ L L V+D +W+ + + L ++DLS ++V L L+ C L
Sbjct: 364 SFVHCRQLQQLKLSCCRRVSDVRWLAAL----TCLRTLDLSHTNVRSRWLESLRACRYLV 419
Query: 85 SLDFNFC---IQIS----------------DGGLEHLRGLSNLTSLSFRR-NNAITAQGM 124
L+ +C +++S D G ++L + L+F + + + +
Sbjct: 420 ELNVAYCRDVVEVSFLSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFLLLKDCSSVKDL 479
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
L LVKLD ER + + + KLE L+ ++C+ +TD +K L GL NLK+
Sbjct: 480 HFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKCLEGLRNLKT 537
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNL-EGCPVTAACLDSLSALGSLFYLNLNRCQLSD- 242
L ++ + VT+ GI+ L L +++ E C +T L+ L L +L + ++ L+D
Sbjct: 538 LDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITH--LEFLRPLPNLQQVVADQMNLTDI 595
Query: 243 ---DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSG 298
G R+T ES L G V L L+ L L + + ++G+R L+
Sbjct: 596 GGLTGAPSLRRVTLNESKRL--------GTVGEVRLPYLQELSLRKSTISNAGIRSLLAS 647
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG- 357
+L+ +++ S L L+ L +L+ L L ++T + + S L L +
Sbjct: 648 CRSLQHLDMQHCH-SVTELSALSQLPNLRELLLRNIRVTGEFMTHIASCVNLRKLQMTEC 706
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
A ITD L ++L +++ +T G+K + +L LNLS+ +T+ + +
Sbjct: 707 ADITDVNC--LSALQSLEDIDLSRTSVTTEGIKGLSKCYALRKLNLSECRYVTN--VNCL 762
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
L L L++ + +T G+ L L +L L C N ++RL S LP+L F
Sbjct: 763 GKLPFLRELHLEKTNVTDKGIAGLSNCIQLETLALTKCSRITN-VERLHS-SLPHLEEF 819
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 206/438 (47%), Gaps = 43/438 (9%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
++ I+S GS L+ +DL + V D+G C LQ L + C ++SD + L L+ L
Sbjct: 338 VEFISSLGS-LVELDLRDNWVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCL 394
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
+L N + ++ +++ LV+L++ C + + L L L+ L++ + I
Sbjct: 395 RTLDLSHTN-VRSRWLESLRACRYLVELNVAYCRDV-VEVSFLSELRLLKHLDLSGTD-I 451
Query: 169 TDSDMKPL---SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+ ++ P+ GLT L L CS V D + +L+ L++L L+ E + A + +
Sbjct: 452 GEQNLDPIGRCEGLTFL--LLKDCSSVKD--LHFLETLRELVKLDTERTGIMDANVCQVV 507
Query: 226 ALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
A L +L+ C L+D C L NL++L+L + +EG+ +L +L+ +++S
Sbjct: 508 ACKKLEFLSFRYCHLLTDVKC--LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVS 565
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKL-------------AGLS 324
+ + + L L L NL+ + ++D SLR++ L
Sbjct: 566 ECCL-ITHLEFLRPLPNLQQVVADQMNLTDIGGLTGAPSLRRVTLNESKRLGTVGEVRLP 624
Query: 325 SLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG 382
L+ L+L I++ G+ + L S L HLD+ +T+ A L NLR L +
Sbjct: 625 YLQELSLRKSTISNAGIRSLLASCRSLQHLDMQHCHSVTELSA--LSQLPNLRELLLRNI 682
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+T + HI +L L +++ ++TD + +S L L +++S + +T+ G++ L
Sbjct: 683 RVTGEFMTHIASCVNLRKLQMTECADITD--VNCLSALQSLEDIDLSRTSVTTEGIKGLS 740
Query: 443 PLKNLRSLTLESCKVTAN 460
LR L L C+ N
Sbjct: 741 KCYALRKLNLSECRYVTN 758
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 184/418 (44%), Gaps = 44/418 (10%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L + +++ + + +C+NL+ + + C + LE L LT LS N
Sbjct: 206 LRSLTLFATPLSNQIMSYFCECTNLERVVVDSCCGLV--SLECFAALQRLTHLSVL-NCT 262
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT +G+ + +L + L+ C MKL SLN L
Sbjct: 263 ITDEGLPPISKCFSLQYVMLDNC-------------MKLRSLNC-------------LGS 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L NL++L +S +++ + G+ L+ L+ L +L A ++ +S+LGSL L+L
Sbjct: 297 LRNLRTLIVSRNRIPEEGVQGLRKLRDLEVLRFSVFNRPTA-VEFISSLGSLVELDLRDN 355
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D GC F L+ L L C + D + L L L+ L+LS T V S L L
Sbjct: 356 WVGDAGCASFVHCRQLQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHTNVRSRWLESLR 413
Query: 298 GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
L +N+++ + + S L+ L LK L+L I + L + GLT L L
Sbjct: 414 ACRYLVELNVAYCRDVVEVSF--LSELRLLKHLDLSGTDIGEQNLDPIGRCEGLTFL-LL 470
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+ +L + L L+ G+ DA V + L L+ LTD ++
Sbjct: 471 KDCSSVKDLHFLETLRELVKLDTERTGIMDANVCQVVACKKLEFLSFRYCHLLTD--VKC 528
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKRLQSRDLPNL 473
+ GL L +L+++ + +T+ G+ L +L + + E C +T + R LPNL
Sbjct: 529 LEGLRNLKTLDLAGTNVTNEGISSLPKCVSLEYVDVSECCLITHLEFL----RPLPNL 582
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 137/317 (43%), Gaps = 54/317 (17%)
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL ++ NC ++S+ L +T++ L + D+ YL G+ L +L
Sbjct: 156 LESLTVR--NCFSESEAS-LCSVTSI--LNSRATNRRDARTFYLSGVTSLGVLR------ 204
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS--------------- 261
CL SL+ + LS+ F TNLE + +DS
Sbjct: 205 ---CLRSLTLFAT---------PLSNQIMSYFCECTNLERVVVDSCCGLVSLECFAALQR 252
Query: 262 --------CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
C I DEGL ++ +L+ + L D + L L L NL ++ +S I
Sbjct: 253 LTHLSVLNCTITDEGLPPISKCFSLQYVML-DNCMKLRSLNCLGSLRNLRTLIVSRNRIP 311
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ ++ L L L+ L T + ++SL L LDL + D+G A + +
Sbjct: 312 EEGVQGLRKLRDLEVLRFSVFN-RPTAVEFISSLGSLVELDLRDNWVGDAGCASFVHCRQ 370
Query: 374 LRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
L+ L++ C ++D V+ + L+ L L+LS N+ + LE + LV LNV+ R
Sbjct: 371 LQQLKLSCCRRVSD--VRWLAALTCLRTLDLSHT-NVRSRWLESLRACRYLVELNVAYCR 427
Query: 433 --ITSAGLRHLKPLKNL 447
+ + L L+ LK+L
Sbjct: 428 DVVEVSFLSELRLLKHL 444
>gi|371942108|gb|AEX60866.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|255523032|ref|ZP_05390004.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513147|gb|EET89415.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 676
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 153/325 (47%), Gaps = 69/325 (21%)
Query: 124 MKAFAG---LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+K F+G L NL +L+L R + I+ + LK L+KL+S+++ + SD+ L LT
Sbjct: 170 IKDFSGIENLTNLKQLNL-RESEIND-ISELKNLVKLQSIDLSYNKI---SDISALKNLT 224
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
NLK L + +KV D I+ L L L LNL P A N ++
Sbjct: 225 NLKKLNLGNNKVRD--ISVLSKLTNLQELNLGYIPYHDFETPDPEA---------NYNEI 273
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--SSGLRHLSG 298
SD K LTNL++LNL I D L L GL NLK L+LS Q+ SS + L
Sbjct: 274 SDISALK--NLTNLQTLNLGYTKIKD--LNALKGLNNLKTLDLSGNQISDISSIVNVLKE 329
Query: 299 LTNLESINLSFTGISD--------------------GSLRKLAGLSSLKSLNLDARQITD 338
LT+L +NLS IS+ ++ +L GLS+L++L+L + QI+D
Sbjct: 330 LTSLNDLNLSTNEISNIDELNKLTSLKMLKLNSNKISNINRLKGLSNLQTLDLSSNQISD 389
Query: 339 TG---------------------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
T + L LT L L+L+ +I+D A L+ NL+ +
Sbjct: 390 TANTLKELNNLNDLNLSNNQISNIGELNKLTNLKALNLYYNKISDISA--LKGLSNLQMI 447
Query: 378 EICGGGLTDAGV-KHIKDLSSLTLL 401
++ ++D V +++ +L L LL
Sbjct: 448 DLSYNEISDISVFENLANLRELILL 472
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 131/264 (49%), Gaps = 43/264 (16%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
+ISD + L+ L+NL +L+ + + A GL NL LDL + + I +
Sbjct: 272 EISD--ISALKNLTNLQTLNL---GYTKIKDLNALKGLNNLKTLDLSGNQISDISSIVNV 326
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
LK L L LN+ N I++ D L+ LT+LK L+++ +K+ S I LKGL L L+
Sbjct: 327 LKELTSLNDLNLS-TNEISNID--ELNKLTSLKMLKLNSNKI--SNINRLKGLSNLQTLD 381
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L ++ ++L L +L LNL+ Q+S+ G + ++LTNL++LNL I D
Sbjct: 382 LSSNQISDTA-NTLKELNNLNDLNLSNNQISNIG--ELNKLTNLKALNLYYNKISD---- 434
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ L GL+NL+ I+LS+ ISD S+ L++L+ L
Sbjct: 435 ----------------------ISALKGLSNLQMIDLSYNEISDISV--FENLANLRELI 470
Query: 331 LDARQITDTGLAALTSLTGLTHLD 354
L + I+D + AL + H++
Sbjct: 471 LLSNPISDVDIQALKNALPQCHIN 494
>gi|405757422|ref|YP_006686698.1| internalin A protein InlA, N-terminal part, partial [Listeria
monocytogenes SLCC2479]
gi|145687805|gb|ABP88875.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687811|gb|ABP88878.1| truncated internalin A precursor [Listeria monocytogenes]
gi|145687813|gb|ABP88879.1| truncated internalin A precursor [Listeria monocytogenes]
gi|167861890|gb|ACA05644.1| InlA [Listeria monocytogenes]
gi|167861942|gb|ACA05670.1| InlA [Listeria monocytogenes]
gi|167861986|gb|ACA05692.1| InlA [Listeria monocytogenes]
gi|194326143|emb|CAQ77230.1| internalin A [Listeria monocytogenes]
gi|298359794|gb|ADI77476.1| truncated internalin A [Listeria monocytogenes]
gi|298359982|gb|ADI77570.1| truncated internalin A [Listeria monocytogenes]
gi|298360074|gb|ADI77616.1| truncated internalin A [Listeria monocytogenes]
gi|298360136|gb|ADI77647.1| truncated internalin A [Listeria monocytogenes]
gi|298360184|gb|ADI77671.1| truncated internalin A [Listeria monocytogenes]
gi|298360286|gb|ADI77722.1| truncated internalin A [Listeria monocytogenes]
gi|298360300|gb|ADI77729.1| truncated internalin A [Listeria monocytogenes]
gi|298360306|gb|ADI77732.1| truncated internalin A [Listeria monocytogenes]
gi|298360344|gb|ADI77751.1| truncated internalin A [Listeria monocytogenes]
gi|298360352|gb|ADI77755.1| truncated internalin A [Listeria monocytogenes]
gi|298360358|gb|ADI77758.1| truncated internalin A [Listeria monocytogenes]
gi|298360602|gb|ADI77880.1| truncated internalin A [Listeria monocytogenes]
gi|298360636|gb|ADI77897.1| truncated internalin A [Listeria monocytogenes]
gi|371942098|gb|AEX60861.1| truncated internaline [Listeria monocytogenes]
gi|371942122|gb|AEX60873.1| truncated internaline [Listeria monocytogenes]
gi|404235304|emb|CBY56706.1| similar to internalin A protein InlA, N-terminal part [Listeria
monocytogenes SLCC2479]
Length = 576
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|167861934|gb|ACA05666.1| InlA [Listeria monocytogenes]
gi|194326141|emb|CAQ77229.1| internalin A [Listeria monocytogenes]
Length = 538
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
>gi|51850106|dbj|BAD42394.1| leucine-rich repeat protein [Ralstonia solanacearum]
Length = 462
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L SLN+ GI D G L L L++SD ++G +G R L+G L ++
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
GI R LA +L L+L +I G AL + LT L++ G + +GAA L
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L+I G+ +AG + + ++L LN++ N + + ++ T L +L++ +
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLNVANN-GIEEAGARALAASTTLTALDIGS 392
Query: 431 SRITSAGLRHL 441
+RI AG + L
Sbjct: 393 NRIGDAGAQAL 403
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+L LDL RC G + G+ +L E L++ C +S + L+ L L
Sbjct: 143 SLTALDLSRCE----GPITSAGIARLLALPLERLDVSGCGLDAES-ARLLASHPTLTVLN 197
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G A L KLT LN+ ++ A +L A L L+++ ++ D G
Sbjct: 198 ISRNAIGDDGAAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGAR 257
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ L L+ CGIG EG L L L+L ++G G L+ L S+N
Sbjct: 258 ALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLN 317
Query: 307 ------------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ GI + R L ++L LN+ I + G
Sbjct: 318 VCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGAR 377
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
AL + T LT LD+ RI D+GA L L +L+ + D G + D + L LN
Sbjct: 378 ALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLN 437
Query: 403 LSQN 406
+ N
Sbjct: 438 VGAN 441
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 5/248 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L+A +L L+L ++ G E + L SLN+ CG
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAALLA 332
Query: 276 CNLKCLEL--SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ EL + +G++G R L L +N++ GI + R LA ++L +L++ +
Sbjct: 333 ASAALTELDIGNNGIGNAGARALGANATLVKLNVANNGIEEAGARALAASTTLTALDIGS 392
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I D G AL + L LD I D GA L + L +L + + +AG++ ++
Sbjct: 393 NRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452
Query: 394 DLSSLTLL 401
++L +L
Sbjct: 453 ASTTLAVL 460
>gi|149178815|ref|ZP_01857396.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
gi|148842356|gb|EDL56738.1| serine/threonine protein kinase [Planctomyces maris DSM 8797]
Length = 1189
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFG 357
LT++E IN+ ++D L L G +L+ +NL + + TD GLA L+ GL LDL+G
Sbjct: 547 LTHVELINMK--KVTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWG 604
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-----LLNLSQNCNLTDK 412
IT G Y +F +LR L + L+ + +K +SL +L+L+Q D
Sbjct: 605 TNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLELLMLSLTQA---DDS 661
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
TL ++SG + L LN+ + I GL L+ +NLR+L L VT I+RL ++ LP
Sbjct: 662 TLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL-AQALPE 720
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 42/283 (14%)
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
I+ KVTD+G+A L+G + L +NL P + +D G
Sbjct: 553 INMKKVTDTGLAALRGTKNLRFVNLAYSP-----------------------EFTDAGLA 589
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS---SGLRHLSGLTNLE 303
S L+ L+L I +GL T +L+ L L DTQ+ + S L+ + L LE
Sbjct: 590 HLSDNRGLQRLDLWGTNITKQGLEYFTDFPDLRDLRLGDTQLSAEDLSILKRYASLQKLE 649
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ LS T D +L L+G S L LNL+ I D GL +L L +L L +T
Sbjct: 650 LLMLSLTQADDSTLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTE 709
Query: 364 GAAYLR--------NFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
G L ++ L+ G T DAG + D + Q ++ K +
Sbjct: 710 GIRRLAQALPECDIDWSELKKTSTSNGRWTPDAGQQKFFD-EVARMKATDQVVAVSQKLM 768
Query: 415 ELISGLTGLVSLNVSNSRITS----AG--LRHLKPLKNLRSLT 451
E+ G G + + N + AG + + P++ L LT
Sbjct: 769 EVNPGFDGKLKETIENGHVVGLTFLAGDHIAEIWPVRALSDLT 811
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 23/182 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
VTD+GL L+ NL+ ++ + + +D GL HL L L N IT QG++ F
Sbjct: 558 VTDTGLAALRGTKNLRFVNLAYSPEFTDAGLAHLSDNRGLQRLDLWGTN-ITKQGLEYFT 616
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+L L L G L E L+I +K + L L+ L +S
Sbjct: 617 DFPDLRDLRL--------GDTQLSA----EDLSI----------LKRYASLQKLELLMLS 654
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
++ DS +A L G +L LNLE + L+SL +L L LN+ ++ +G +
Sbjct: 655 LTQADDSTLAILSGASQLGQLNLEQTNINDVGLESLEQNRNLRNLYLNKTPVTTEGIRRL 714
Query: 249 SR 250
++
Sbjct: 715 AQ 716
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 171/426 (40%), Gaps = 66/426 (15%)
Query: 67 SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG--- 123
+ TD+GL HL D LQ LD + I+ GLE+ +L L + ++A+
Sbjct: 581 PEFTDAGLAHLSDNRGLQRLDL-WGTNITKQGLEYFTDFPDLRDLRL-GDTQLSAEDLSI 638
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+K +A L L L L L L G +L LN++ N I D ++ L NL+
Sbjct: 639 LKRYASLQKLELLMLSLTQADDSTLAILSGASQLGQLNLEQTN-INDVGLESLEQNRNLR 697
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---------ALGSLFYLN 234
+L ++ + VT GI L L C + + L S A F+
Sbjct: 698 NLYLNKTPVTTEGIRRLAQ-------ALPECDIDWSELKKTSTSNGRWTPDAGQQKFFDE 750
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSG 292
+ R + +D +L +N G E + N + GL L +++
Sbjct: 751 VARMKATDQVVAVSQKLME---VNPGFDGKLKETIENGHVVGLTFLAGDHIAEIW----P 803
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+R LS LT+L G + + KL LS L L L I+++ ++ LT L G+
Sbjct: 804 VRALSDLTSL------VCGGNHLTHGKLTDLSPLVGLPLTKMDISNSSVSDLTPLKGMKL 857
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L+GA + L + L+ L + H+ DLS L + L+ N NL
Sbjct: 858 AHLYGAHTRIKDLSPLADMP-LKVLFLWSS-------PHVSDLSPLKGMRLT-NLNLDFT 908
Query: 413 TLELISGLTG--LVSLNVSNSRITS----------------AGLRHLKPLK--NLRSLTL 452
+ +S L G L L V + + S G+ L PLK L +L +
Sbjct: 909 QVADLSPLQGMDLTHLAVHQTHVRSLLPLSGMPLQALYCSNTGISDLSPLKEAELTTLHI 968
Query: 453 ESCKVT 458
E+ +V+
Sbjct: 969 ENTQVS 974
>gi|87311421|ref|ZP_01093541.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
gi|87285833|gb|EAQ77747.1| hypothetical protein DSM3645_25297 [Blastopirellula marina DSM
3645]
Length = 192
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+E+SD V + L+ LS T L+ I L T ++D + L L L+ +NL ITD
Sbjct: 35 SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GLA + L LT L + +TD+G A LR+ +LR L + LTDA ++HI +++SL
Sbjct: 95 GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154
Query: 400 LLNLSQNCNLTDKTL 414
L Q N+T+ L
Sbjct: 155 SFYLDQ-TNITEPGL 168
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+SI +S +S L+ L+ + L+ + LD + D A L +L L ++L A ITD
Sbjct: 34 DSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITD 93
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
+G A + L L I LTDAG+ ++D SL L+L Q LTD LE I+ +
Sbjct: 94 AGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTP-LTDAALEHIAEINS 152
Query: 423 LVSLNVSNSRITSAGLRHL 441
L S + + IT GL L
Sbjct: 153 LESFYLDQTNITEPGLAKL 171
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
S+++S V+ + + L +L + L+ P+ L AL L ++NL + ++D
Sbjct: 35 SIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDA 94
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G + ++L L L + S + D G+ L +L+ L L T + + L H++ + +LE
Sbjct: 95 GLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLE 154
Query: 304 SINLSFTGISDGSLRKL 320
S L T I++ L KL
Sbjct: 155 SFYLDQTNITEPGLAKL 171
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
V+ A L LS L + L++ L+D L L+ +NL I D GL + L
Sbjct: 43 VSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQFVNLPQADITDAGLAEIAKL 102
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L + + +G+ L +L ++L T ++D +L +A ++SL+S LD
Sbjct: 103 PQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAALEHIAEINSLESFYLDQTN 162
Query: 336 ITDTGLAALTSLTGLTHL 353
IT+ GLA L H+
Sbjct: 163 ITEPGLAKLIERRPQLHV 180
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L L+ + + + +TD+G+A + L +LT L + +T A + +L SL +L+L
Sbjct: 75 LGALPELQFVNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHL 134
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ L+D E + + +LES LD I + GL L
Sbjct: 135 LQTPLTDAALEHIAEINSLESFYLDQTNITEPGLAKL 171
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 1/148 (0%)
Query: 150 NLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
L+ ++ ES +I+ + ++ ++++ LS T L+ +++ + + D A L L +L
Sbjct: 24 QLRQVIAGESDSIEVSDRTVSPAELQLLSRATQLQRIRLDQTPLADPAAAVLGALPELQF 83
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+NL +T A L ++ L L L + L+D G +L L+L + D
Sbjct: 84 VNLPQADITDAGLAEIAKLPQLTQLRIGSPHLTDAGIAALRDNPSLRFLHLLQTPLTDAA 143
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHL 296
L ++ + +L+ L T + GL L
Sbjct: 144 LEHIAEINSLESFYLDQTNITEPGLAKL 171
>gi|407410013|gb|EKF32614.1| hypothetical protein MOQ_003536 [Trypanosoma cruzi marinkellei]
Length = 835
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 113/415 (27%), Positives = 193/415 (46%), Gaps = 48/415 (11%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC----IQISDGGLEHLRGLSNLTSLS 112
S L S+ L + +++ +++L +C +L+ + N C L+ L+ LS L
Sbjct: 193 SKLRSLTLCNTPLSEVMMLYLSECVSLERVVMNSCRGLSSLECLSSLQRLKELSLL---- 248
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
N IT +G+ + +L + L+ C MKL+S+N
Sbjct: 249 ---NMGITEEGLAFISSCNSLQHIQLDNC-------------MKLQSINC---------- 282
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
L L L++L +S ++V+D GI L L+ L L L ++ ++ + L L
Sbjct: 283 ---LGSLLGLRTLSVSRNRVSDVGIQSLSNLKNLEQLRLVSFNRLSS-VEPVVCLDKLLE 338
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+L +++D+GC + ++ L L SC + + + L +L+ L+LS T V S+
Sbjct: 339 LDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-VRWICALTSLRFLDLSKTHVRSAD 397
Query: 293 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L+ L+ LE +++ S +G+ D S + GL SLK L+L I D G +L T LT
Sbjct: 398 LQLLTVCQRLEELHVASCSGVKDVSF--VEGLLSLKHLDLTDTSIKDAGTQSLRKCTALT 455
Query: 352 HLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L R +TD ++ NL SL + G + DA + + + L LL+L LT
Sbjct: 456 FLSLQDCRFLTD--IHFVEPLNNLLSLNLEGTEVVDANIIPLMHCTKLELLSLRHCLFLT 513
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL-ESCKVTANDIKR 464
D + + L L SL++S + +T G+ + +L + L E C +T + R
Sbjct: 514 D--VRCLRELKALKSLDLSGTYVTDEGISDVSQCISLERIDLSECCLITHFEFLR 566
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/443 (24%), Positives = 188/443 (42%), Gaps = 80/443 (18%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 336 LLELDLTENRVTDEGCAALANCGQIQKLTLASCRCVSD-----VRWICALTSLRF----- 385
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
LDL + L L +LE L++ C+ + D + G
Sbjct: 386 -----------------LDLSKTHVRSADLQLLTVCQRLEELHVASCSGVKDVSF--VEG 426
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-----------------------EGCP 215
L +LK L ++ + + D+G L+ LT L+L EG
Sbjct: 427 LLSLKHLDLTDTSIKDAGTQSLRKCTALTFLSLQDCRFLTDIHFVEPLNNLLSLNLEGTE 486
Query: 216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
V A + L L L+L C L+D C L L+SL+L + DEG+ +++
Sbjct: 487 VVDANIIPLMHCTKLELLSLRHCLFLTDVRC--LRELKALKSLDLSGTYVTDEGISDVSQ 544
Query: 275 LCNLKCLELSDTQVGS--SGLRHLSGLTNL--ESINL----------SFTGISDGSLRKL 320
+L+ ++LS+ + + LR L+ L ++ + +N+ S G+S ++L
Sbjct: 545 CISLERIDLSECCLITHFEFLRPLTALKHVIADRMNVLDVTGLGGSGSVEGVSLADCKRL 604
Query: 321 AGLSSLKS-----LNLDARQITDTGL-AALTSLTGLTHLDLFG-ARITDSGAAYLRNFKN 373
+ L++ L+L ITD+G+ L L L+L IT+ A + +
Sbjct: 605 GSMCLLEAPRLLDLSLKKSTITDSGIHGVLLRCHSLRRLNLQNCTSITELSA--VAQLPS 662
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L L + + + V + ++L L + + ++TD + + L LV L++S + +
Sbjct: 663 LTELFVRNMKIKNKSVAFVARCATLEKLQMVECVDITD--VNSLKYLHRLVELDLSRTSV 720
Query: 434 TSAGLRHLKPLKNLRSLTLESCK 456
TS G+ L NL+ L L C+
Sbjct: 721 TSGGIVGLASCYNLKKLNLSGCR 743
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 31/228 (13%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 523 ALKSLDLSGTYVTDEGISDVSQCISLERIDLSECCLITH--FEFLRPLTALKHVIADRMN 580
Query: 118 AITAQGM--------------KAFAGLI-----NLVKLDLERCTR----IHGGLVNLKGL 154
+ G+ K + L+ L L++ T IHG L+ L
Sbjct: 581 VLDVTGLGGSGSVEGVSLADCKRLGSMCLLEAPRLLDLSLKKSTITDSGIHGVLLRCHSL 640
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ LN++ NC + +++ ++ L +L L + K+ + +A++ L L + C
Sbjct: 641 RR---LNLQ--NCTSITELSAVAQLPSLTELFVRNMKIKNKSVAFVARCATLEKLQMVEC 695
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
V ++SL L L L+L+R ++ G + NL+ LNL C
Sbjct: 696 -VDITDVNSLKYLHRLVELDLSRTSVTSGGIVGLASCYNLKKLNLSGC 742
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 4/193 (2%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
G+ NL L L+ L L +T + + +LS +LE + ++ + SL L+ L LK
Sbjct: 185 GVTNLGVLSKLRSLTLCNTPLSEVMMLYLSECVSLERVVMN-SCRGLSSLECLSSLQRLK 243
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
L+L IT+ GLA ++S L H+ L S L + LR+L + ++D
Sbjct: 244 ELSLLNMGITEEGLAFISSCNSLQHIQLDNCMKLQS-INCLGSLLGLRTLSVSRNRVSDV 302
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G++ + +L +L L L L+ ++E + L L+ L+++ +R+T G L +
Sbjct: 303 GIQSLSNLKNLEQLRLVSFNRLS--SVEPVVCLDKLLELDLTENRVTDEGCAALANCGQI 360
Query: 448 RSLTLESCKVTAN 460
+ LTL SC+ ++
Sbjct: 361 QKLTLASCRCVSD 373
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Query: 55 QGSSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+ LL + L S +TDSG IH L C +L+ L+ C I++ L + L +LT L
Sbjct: 611 EAPRLLDLSLKKSTITDSG-IHGVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTEL- 666
Query: 113 FRRNNAITAQGMKAFAG-----------------------LINLVKLDLERCTRIHGGLV 149
F RN I + + A L LV+LDL R + GG+V
Sbjct: 667 FVRNMKIKNKSVAFVARCATLEKLQMVECVDITDVNSLKYLHRLVELDLSRTSVTSGGIV 726
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L L+ LN+ C +T+ + L L+ L + + VTDSGI L +L L
Sbjct: 727 GLASCYNLKKLNLSGCRYLTEVNCL--GELRLLRELHLGRTTVTDSGIVGLCRCVQLETL 784
Query: 210 NLEGC 214
L C
Sbjct: 785 TLTNC 789
>gi|298360550|gb|ADI77854.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 72/339 (21%)
Query: 117 NAITAQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+A A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 50 DAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN----------- 98
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
NL + S +++TD I LK L KL + + + A + L+ L +L
Sbjct: 99 --------NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTG 146
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L L Q++D + LTNL L L S I D + L+GL NL+ L + QV +
Sbjct: 147 LTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TD 199
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
L+ L+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+
Sbjct: 200 LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTN 252
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
LD L + G L D G + L++LT L+L+ N
Sbjct: 253 LD---------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---IS 286
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 287 NLAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|291391263|ref|XP_002712147.1| PREDICTED: F-box and leucine-rich repeat protein 13 [Oryctolagus
cuniculus]
Length = 739
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 121/432 (28%), Positives = 208/432 (48%), Gaps = 35/432 (8%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + + D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 251 LQELNVSDCSTLTDELMRYISEGCPGVLYLNLSNTTITNRTMRLLPRHFYNLQNLSLAYC 310
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLVKLDL----ER 140
+ +D GL++L G L L I+ QG K A G+++L D+ +
Sbjct: 311 RKFTDKGLQYLSLGNGCHKLICLDLSGCTQISVQGFKNIANSCSGIMHLTINDMPTLTDN 370
Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAY 199
C + LV + + S+ I+D K L+ NL+ ++ +K +TD+ +
Sbjct: 371 CVK---ALV--EKCPSITSVTFIGSPHISDCAFKALTA-CNLRKIRFEGNKRITDACFKF 424
Query: 200 L-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF---SRLTN 253
+ K + + + C +T + L SL+ L L LNL C ++ D G + F
Sbjct: 425 IDKNYPNINHIYMSDCKGITDSSLKSLATLKQLTVLNLANCGRIGDMGIKHFLDGPVSQR 484
Query: 254 LESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFT 310
L LNL +C +GD+ ++ L+ C NL L L + + + G+ ++ + +L S++LS T
Sbjct: 485 LRELNLSNCVHLGDDSVLRLSERCPNLNYLSLRNCEHLTDQGIENIVNILSLVSVDLSGT 544
Query: 311 GISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAY 367
IS+ L L+ LK L+L D +ITD G+ A S L HLD+ + +++D
Sbjct: 545 IISNEGLMVLSRHKKLKELSLSDCGKITDVGIQAFCKSSRTLEHLDVSYCPQLSDDTIRA 604
Query: 368 LRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL-ELISGLTGL 423
L + NL SL + G +TDA ++ + L +L++S LTD+ L +L G L
Sbjct: 605 LAIYCVNLTSLSVAGCPKITDAAMEMLSAKCHYLHILDVSGCVLLTDQILADLRMGCRQL 664
Query: 424 VSLNVSNSRITS 435
SL + R+ S
Sbjct: 665 RSLKMLYCRLIS 676
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 100/373 (26%)
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL+ L +S CS +TD + Y+ EGCP + YLNL+
Sbjct: 250 NLQELNVSDCSTLTDELMRYIS----------EGCP-------------GVLYLNLSNTT 286
Query: 240 LSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLT---GLCNLKCLELSD-TQVGSSGL 293
+++ R NL++L+L C D+GL L+ G L CL+LS TQ+ G
Sbjct: 287 ITNRTMRLLPRHFYNLQNLSLAYCRKFTDKGLQYLSLGNGCHKLICLDLSGCTQISVQGF 346
Query: 294 RHL----SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLN-LDARQITDTGLAALTSL 347
+++ SG+ +L +IN ++D ++ L S+ S+ + + I+D ALT+
Sbjct: 347 KNIANSCSGIMHL-TIN-DMPTLTDNCVKALVEKCPSITSVTFIGSPHISDCAFKALTA- 403
Query: 348 TGLTHLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLS 404
L + G RITD+ ++ +N+ N+ + + G+TD+ +K + L LT+LNL+
Sbjct: 404 CNLRKIRFEGNKRITDACFKFIDKNYPNINHIYMSDCKGITDSSLKSLATLKQLTVLNLA 463
Query: 405 -----------------------------------------------------QNC-NLT 410
+NC +LT
Sbjct: 464 NCGRIGDMGIKHFLDGPVSQRLRELNLSNCVHLGDDSVLRLSERCPNLNYLSLRNCEHLT 523
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRL--QS 467
D+ +E I + LVS+++S + I++ GL L K L+ L+L C K+T I+ S
Sbjct: 524 DQGIENIVNILSLVSVDLSGTIISNEGLMVLSRHKKLKELSLSDCGKITDVGIQAFCKSS 583
Query: 468 RDLPNL-VSFRPE 479
R L +L VS+ P+
Sbjct: 584 RTLEHLDVSYCPQ 596
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 55/305 (18%)
Query: 21 TEVSLEAFRDCA-----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGL 74
T++S++ F++ A + L + P + D + + + S+ SV GS ++D
Sbjct: 339 TQISVQGFKNIANSCSGIMHLTINDMPTLTDNCVKALVEKCPSITSVTFIGSPHISDCAF 398
Query: 75 IHLKDCSNLQSLDF----------------NF----------CIQISDGGLEHLRGLSNL 108
L C NL+ + F N+ C I+D L+ L L L
Sbjct: 399 KALTAC-NLRKIRFEGNKRITDACFKFIDKNYPNINHIYMSDCKGITDSSLKSLATLKQL 457
Query: 109 TSLSFRRNNAITAQGMKAFA-GLIN--LVKLDLERCTRIHGGLVNLKGLMK----LESLN 161
T L+ I G+K F G ++ L +L+L C +H G ++ L + L L+
Sbjct: 458 TVLNLANCGRIGDMGIKHFLDGPVSQRLRELNLSNC--VHLGDDSVLRLSERCPNLNYLS 515
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC------P 215
++ C +TD ++ + + +L S+ +S + +++ G+ L +KL L+L C
Sbjct: 516 LRNCEHLTDQGIENIVNILSLVSVDLSGTIISNEGLMVLSRHKKLKELSLSDCGKITDVG 575
Query: 216 VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFS-RLTNLESLNLDSCG-IGDEGLVNL 272
+ A C S +L +L+++ C QLSDD + NL SL++ C I D + L
Sbjct: 576 IQAFCKSS----RTLEHLDVSYCPQLSDDTIRALAIYCVNLTSLSVAGCPKITDAAMEML 631
Query: 273 TGLCN 277
+ C+
Sbjct: 632 SAKCH 636
>gi|242004502|ref|XP_002423122.1| fbxl14, putative [Pediculus humanus corporis]
gi|212506068|gb|EEB10384.1| fbxl14, putative [Pediculus humanus corporis]
Length = 461
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 161/326 (49%), Gaps = 47/326 (14%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ L+SLN+ C +TD + ++ L L L +S C +VTD+ + + + L L
Sbjct: 153 VQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNL 212
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-I 264
+L L GC C +++ G L L+ LNL SC I
Sbjct: 213 EVLELGGC-----------------------CNVTNTGLLLVGWGLKKLKRLNLRSCWHI 249
Query: 265 GDEGLVNLTGL--------CNLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSF-TGIS 313
D+G+ +L G L+ L L D Q + LRH+S GLT L+SINLSF I+
Sbjct: 250 SDQGISHLAGPNPDVGDGNPALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSIT 309
Query: 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-R 369
D L+ LA ++SL+ LNL A I+D G+A L + ++ LD+ F +I D ++ +
Sbjct: 310 DSGLKYLAKMTSLRELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHVSQ 369
Query: 370 NFKNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLN 427
+L+SL + ++D G+ I L L LN+ Q +TD+ + ++ L L ++
Sbjct: 370 GLFHLKSLSLNACNISDDGIVRIAITLHDLETLNIGQCWKITDRGVHTIVDSLKHLRCID 429
Query: 428 VSN-SRITSAGLRHLKPLKNLRSLTL 452
+ S+IT+ GL + L L +L L
Sbjct: 430 LYGCSKITTVGLERIMKLPQLTTLNL 455
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 46/306 (15%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG +VTD GL H + L L+ + C Q++D L + + L+NL L
Sbjct: 161 SLNLSGCYNVTDIGLSHAFVTTLPTLTELNLSLCKQVTDTSLGRIAQYLTNLEVLELGGC 220
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL--------MKLESLNIKWCN 166
+T G+ GL L +L+L C I G+ +L G LE L ++ C
Sbjct: 221 CNVTNTGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPNPDVGDGNPALEYLGLQDCQ 280
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
++D ++ +S GLT LKS+ +S C +TDSG+ YL + L LNL C D++
Sbjct: 281 RLSDEALRHVSVGLTGLKSINLSFCVSITDSGLKYLAKMTSLRELNLRAC-------DNI 333
Query: 225 SALGSLFY---------LNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLV--- 270
S LG + L+++ C ++ D S+ L +L+SL+L++C I D+G+V
Sbjct: 334 SDLGMAYLAEGGSRISSLDVSFCDKIGDQALLHVSQGLFHLKSLSLNACNISDDGIVRIA 393
Query: 271 ----NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSS 325
+L L +C +++D V + + L +L I+L + I+ L ++ L
Sbjct: 394 ITLHDLETLNIGQCWKITDRGVHTI----VDSLKHLRCIDLYGCSKITTVGLERIMKLPQ 449
Query: 326 LKSLNL 331
L +LNL
Sbjct: 450 LTTLNL 455
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 149/327 (45%), Gaps = 82/327 (25%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI--AYLKGLQKLTL 208
+G+ +++ L++K S + G+ NL SL +S C VTD G+ A++ L LT
Sbjct: 135 RGIRRVQVLSLK------RSLRDVVQGIPNLDSLNLSGCYNVTDIGLSHAFVTTLPTLTE 188
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGD 266
LNL C Q++D + ++ LTNLE L L C + +
Sbjct: 189 LNLSLCK-----------------------QVTDTSLGRIAQYLTNLEVLELGGCCNVTN 225
Query: 267 EGLVNL-TGLCNLKCLEL-SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
GL+ + GL LK L L S + G+ HL+G + DG+
Sbjct: 226 TGLLLVGWGLKKLKRLNLRSCWHISDQGISHLAGPN---------PDVGDGN-------P 269
Query: 325 SLKSLNL-DARQITDTGLAALT-SLTGLTHLDL-FGARITDSGAAYLRNFKNLRSLEICG 381
+L+ L L D ++++D L ++ LTGL ++L F ITDSG
Sbjct: 270 ALEYLGLQDCQRLSDEALRHVSVGLTGLKSINLSFCVSITDSG----------------- 312
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLR 439
+K++ ++SL LNL N++D + L G + + SL+VS +I L
Sbjct: 313 -------LKYLAKMTSLRELNLRACDNISDLGMAYLAEGGSRISSLDVSFCDKIGDQALL 365
Query: 440 HL-KPLKNLRSLTLESCKVTANDIKRL 465
H+ + L +L+SL+L +C ++ + I R+
Sbjct: 366 HVSQGLFHLKSLSLNACNISDDGIVRI 392
>gi|112961793|gb|ABI28548.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L LSNLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + L+NL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|395738814|ref|XP_003777155.1| PREDICTED: F-box/LRR-repeat protein 13 [Pongo abelii]
Length = 735
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 195/429 (45%), Gaps = 70/429 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGVMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H K L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHITDCTFKALSTCKLRKIRFEGNKRVTDASFKSVDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVT-----AACLDSLSALGSLFYLN 234
NL + ++ C +TDS + L L++LT+LNL C LD +++ + LN
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPASI-KIRELN 485
Query: 235 LNRC-QLSDDGCEKFS-RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+ C QLSD K S R NL L+L +C + + G
Sbjct: 486 LSNCVQLSDASVMKLSERCPNLNYLSLRNC-----------------------EHLTAQG 522
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGL 350
+ ++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 523 IGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSVIL 582
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQN 406
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 583 EHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGC 642
Query: 407 CNLTDKTLE 415
LTD+ LE
Sbjct: 643 VLLTDQILE 651
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 VI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 43/283 (15%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + L LS+T + +
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLYLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG----------------ARITD---SGAAYLRN--FK-----NLRSL 377
S TG+ HL + +RIT +GA ++ + FK LR +
Sbjct: 346 ANSCTGVMHLTINDMPTLTDNCVKALVEKCSRITSLVFTGAPHITDCTFKALSTCKLRKI 405
Query: 378 EICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RIT 434
G +TDA K + K+ +L+ + ++ +TD +L +S L L LN++N RI
Sbjct: 406 RFEGNKRVTDASFKSVDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIG 465
Query: 435 SAGLRHL--KPLK-NLRSLTLESC-KVTANDIKRLQSRDLPNL 473
GL+ P +R L L +C +++ + +L R PNL
Sbjct: 466 DMGLKQFLDGPASIKIRELNLSNCVQLSDASVMKLSER-CPNL 507
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS------------------ 249
LN GC + S+S +L LN++ C +D+ S
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLYLNLSNTTITN 285
Query: 250 --------RLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 297 ----SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+G+ +L +IN ++D ++ L S + SL A ITD AL S L
Sbjct: 346 ANSCTGVMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHITDCTFKAL-STCKL 402
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ + +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 403 RKIRFEGNKRVTDASFKSVDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 408 NLTDKTL-ELISGLTGLV--SLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN +++ A + L + NL L+L +C+ +TA
Sbjct: 463 RIGDMGLKQFLDGPASIKIRELNLSNCVQLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 522
Query: 462 I 462
I
Sbjct: 523 I 523
>gi|223698901|gb|ACN19174.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|255025517|ref|ZP_05297503.1| internalin A [Listeria monocytogenes FSL J2-003]
Length = 744
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|38154342|gb|AAR12158.1| internalin A [Listeria monocytogenes]
Length = 728
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|223698976|gb|ACN19224.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|290988772|ref|XP_002677066.1| predicted protein [Naegleria gruberi]
gi|284090672|gb|EFC44322.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 111/221 (50%)
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R L+D+ R+T L +L + + I D + ++ + L L+L Q+ + G + +
Sbjct: 43 RNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSI 102
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
S L NL +N+ I+D + ++ L +L L + + +IT ++ L LT L++
Sbjct: 103 SELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIA 162
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I D GA ++ K+L+ L+I G++ G K I +L LT+L +SQN ++ D+ +
Sbjct: 163 YNNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARM 222
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
IS + L L + + I +AG + + L L + ++
Sbjct: 223 ISEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEI 263
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 1/243 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N + D+ L +T L +L+I + + D+ + + +++LT L+LE + S+S
Sbjct: 44 NILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSIS 103
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L +L YLN+ ++D+G E S+L NL L + S I + ++ L NL L ++
Sbjct: 104 ELRNLTYLNIGNNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAY 163
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAAL 344
+G G + +S + +L+ +++S GIS + ++ L L L + I D G +
Sbjct: 164 NNIGDEGAKFISEIKSLKILDISLNGISPIGAKSISELDQLTVLYISQNFSIGDEGARMI 223
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
+ + L L + I ++GA + L L+I + G I+D+ L+ L++
Sbjct: 224 SEMKQLNELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLSIE 283
Query: 405 QNC 407
C
Sbjct: 284 GQC 286
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 45/291 (15%)
Query: 44 VNDKWMDVIASQGS-SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
V +W++VI + S+++ + + V + L DC S+ F I ++D L
Sbjct: 2 VTKQWLNVIRDRSELSMMANNHLVNQVNNEFL----DC--FVSITFARNI-LNDNWFNML 54
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
++ LT+L NN I +K + + L LDLE + G ++ L L LNI
Sbjct: 55 GRMTQLTTLEIG-NNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKSISELRNLTYLNI 113
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL-------EGC- 214
N I D ++ +S L NL L +S ++T ++ L LTLLN+ EG
Sbjct: 114 G-NNPINDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLNIAYNNIGDEGAK 172
Query: 215 -------------------PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
P+ A + L L ++ Y++ N + D+G S + L
Sbjct: 173 FISEIKSLKILDISLNGISPIGAKSISELDQL-TVLYISQN-FSIGDEGARMISEMKQLN 230
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG------LRHLSGLT 300
L + C IG+ G ++++ + L L++S+ ++ G ++HLS L+
Sbjct: 231 ELYIQDCFIGNAGAISISRMDKLTHLDISENEIQIEGESVIRDMKHLSYLS 281
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 333 ARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
AR I D L +T LT L++ I D+ + K L L++ + + G K
Sbjct: 42 ARNILNDNWFNMLGRMTQLTTLEIGNNLIDDNMVKLISEMKQLTGLDLEINQIFNEGAKS 101
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
I +L +LT LN+ N + D+ +E IS L L L VS+ RITS + + L NL L
Sbjct: 102 ISELRNLTYLNIGNNP-INDEGIESISQLDNLTDLTVSSLRITSKSAKFISKLNNLTLLN 160
Query: 452 L 452
+
Sbjct: 161 I 161
>gi|167861940|gb|ACA05669.1| InlA [Listeria monocytogenes]
gi|167861954|gb|ACA05676.1| InlA [Listeria monocytogenes]
gi|194239400|emb|CAQ76840.1| internalin A [Listeria monocytogenes]
gi|298360640|gb|ADI77899.1| truncated internalin A [Listeria monocytogenes]
gi|298360688|gb|ADI77923.1| truncated internalin A [Listeria monocytogenes]
gi|443428860|gb|AGC92229.1| truncated internalin A [Listeria monocytogenes]
gi|443428878|gb|AGC92238.1| truncated internalin A [Listeria monocytogenes]
Length = 684
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|119603704|gb|EAW83298.1| F-box and leucine-rich repeat protein 13, isoform CRA_a [Homo
sapiens]
Length = 735
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 197/428 (46%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK+ +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKVGIEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 463
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 464 IGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 524 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 583
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 584 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCV 643
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 644 LLTDQILE 651
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 127/283 (44%), Gaps = 43/283 (15%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + CL LS+T + +
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG----------------ARITD---SGAAYLRN--FK-----NLRSL 377
S TG+ HL + +RIT +GA ++ + F+ LR +
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKVGIEKCSRITSLVFTGAPHISDCTFRALSACKLRKI 405
Query: 378 EICGGG-LTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS-RIT 434
G +TDA K I K+ +L+ + ++ +TD +L +S L L LN++N RI
Sbjct: 406 RFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIG 465
Query: 435 SAGLRHL---KPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 473
GL+ +R L L +C +++ + +L R PNL
Sbjct: 466 DMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSER-CPNL 507
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS------------------ 249
LN GC + S+S +L LN++ C +D+ S
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 250 --------RLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 297 ----SGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+G+ +L +IN ++D ++ + S + SL A I+D AL++ L
Sbjct: 346 ANSCTGIMHL-TIN-DMPTLTDNCVKVGIEKCSRITSLVFTGAPHISDCTFRALSA-CKL 402
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 403 RKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 408 NLTDKTL-ELISGLTGL--VSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA
Sbjct: 463 RIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 522
Query: 462 I 462
I
Sbjct: 523 I 523
>gi|401420706|ref|XP_003874842.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491078|emb|CBZ26343.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1207
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 37/292 (12%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E RL +L
Sbjct: 421 SGVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECIILHRCR-GVRSLEPLRRLEHL 479
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLK------CLELSD----TQVGSSGLRHLSGLTNLES 304
+SL+L + D L++L G +L+ C +++D + + R L T L +
Sbjct: 480 QSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 539
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
+N+ G+ D SLR+L L++L+ LNL +TD G +AL L L
Sbjct: 540 VNMQHIGLCDKLVELHLQSLRQLTDIGMLKDLTALRVLNLSDNLVTDEGCSALHCLPSLQ 599
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ +TD GV+ +++ + L LNL C
Sbjct: 600 RLNLASCRCITSLAAAFTASGRWMHRLLSLDLSHTNITDVGVQFVQECTDLRYLNL-YGC 658
Query: 408 NLTDKTLELISGLTGLVS---LNVSNSRITSAGLRHLKP-LKNLRSLTLESC 455
+ L L+ L ++S LN+ +R+T+ +H P +NLR L+L C
Sbjct: 659 ----RELRLLPWLQKMISLRWLNLGGTRVTNEETKHYLPCARNLRFLSLSGC 706
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 138/307 (44%), Gaps = 45/307 (14%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+ L G VTD+ L+ L C++L+ L + C QI+D LSF N
Sbjct: 479 LQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD--------------LSFLANLR 524
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + + L++ V + H GL + KL L+++ +TD M L
Sbjct: 525 GTLERLLMPRTLLSNVNMQ-------HIGLCD-----KLVELHLQSLRQLTDIGM--LKD 570
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSL 230
LT L+ L +S + VTD G + L L L LNL C C+ SL+A + L
Sbjct: 571 LTALRVLNLSDNLVTDEGCSALHCLPSLQRLNLASC----RCITSLAAAFTASGRWMHRL 626
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L+ ++D G + T+L LNL C L L + +L+ L L T+V +
Sbjct: 627 LSLDLSHTNITDVGVQFVQECTDLRYLNLYGCR-ELRLLPWLQKMISLRWLNLGGTRVTN 685
Query: 291 SGLRH-LSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLT 348
+H L NL ++LS G S L A L L+ LNL++ + D+ L+ L
Sbjct: 686 EETKHYLPCARNLRFLSLS--GCSSVRLLSFAVKLHHLEYLNLESTSVADSELSCLCHCR 743
Query: 349 GLTHLDL 355
L +L L
Sbjct: 744 KLRYLSL 750
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 167/394 (42%), Gaps = 45/394 (11%)
Query: 77 LKDCSNLQSLDFNFCIQI---SDGGLEHLR----GLSNLTSLSFRRNNAITAQ--GMKAF 127
L +C +L+ + C+ I SD L +L LS +S R ++ AQ KA
Sbjct: 245 LWECGQSAALEISLCVCITCKSDAALHNLTLGAWWLSRYYGVSLRLHHLHPAQLAAFKAA 304
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
++ ++ LE C L + L SL I C+ ++ + + K ++
Sbjct: 305 QRALSPKEIQLEHCVISEDMLQCISTCSDLLSLTIISCSASQQMTLRCIDSILR-KGNEL 363
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL--NLNRCQLSDDGC 245
+D+ A L G A+ A+ +F + N N C +D
Sbjct: 364 RPVGFSDAHSAPLDG--------------DASGGKGTHAMRQVFGMSRNTNGCLKNDTPA 409
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
E +TN G+ +L L L+CL + T + + L+ L+ ++LE I
Sbjct: 410 EPDREVTNWYL----------SGVRSLGSLKQLRCLHILHTPLHETFLQALNTCSSLECI 459
Query: 306 NLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDS 363
L G+ SL L L L+SL+L +TDT L +L T L L L R ITD
Sbjct: 460 ILHRCRGVR--SLEPLRRLEHLQSLSLHGLSVTDTDLLSLAGCTHLRQLVLDECRQITD- 516
Query: 364 GAAYLRNFK-NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
++L N + L L + L++ ++HI L L+L LTD + ++ LT
Sbjct: 517 -LSFLANLRGTLERLLMPRTLLSNVNMQHIGLCDKLVELHLQSLRQLTD--IGMLKDLTA 573
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L LN+S++ +T G L L +L+ L L SC+
Sbjct: 574 LRVLNLSDNLVTDEGCSALHCLPSLQRLNLASCR 607
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 136 LDLERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LDL RCT +H GL NL L +L + + + ++ +S L+ L+++ C V
Sbjct: 1019 LDLTRCTEVHYLSGLENLYALRELTLTQ----SSVDNDGVRVVSACETLEVLRLTECRGV 1074
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD + L GL+KL +L + +T L+ + +L YLN C+ D S L
Sbjct: 1075 TD--VNCLGGLRKLHVLCVARTQLTNQGLEGIGHCLALQYLNCAECRYLSD-VNALSSLK 1131
Query: 253 NLESLNLDSCGIGDEGL 269
+L L+L+ + D G+
Sbjct: 1132 HLIELHLERTDVVDAGI 1148
>gi|148607496|gb|ABQ95524.1| InlA [Listeria monocytogenes]
Length = 730
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|298359722|gb|ADI77440.1| truncated internalin A [Listeria monocytogenes]
gi|298359752|gb|ADI77455.1| truncated internalin A [Listeria monocytogenes]
gi|298359762|gb|ADI77460.1| truncated internalin A [Listeria monocytogenes]
gi|298359812|gb|ADI77485.1| truncated internalin A [Listeria monocytogenes]
gi|298359814|gb|ADI77486.1| truncated internalin A [Listeria monocytogenes]
gi|298359858|gb|ADI77508.1| truncated internalin A [Listeria monocytogenes]
gi|298359886|gb|ADI77522.1| truncated internalin A [Listeria monocytogenes]
gi|298359900|gb|ADI77529.1| truncated internalin A [Listeria monocytogenes]
gi|298359906|gb|ADI77532.1| truncated internalin A [Listeria monocytogenes]
gi|298359912|gb|ADI77535.1| truncated internalin A [Listeria monocytogenes]
gi|298359944|gb|ADI77551.1| truncated internalin A [Listeria monocytogenes]
gi|298359980|gb|ADI77569.1| truncated internalin A [Listeria monocytogenes]
gi|298359990|gb|ADI77574.1| truncated internalin A [Listeria monocytogenes]
gi|298359992|gb|ADI77575.1| truncated internalin A [Listeria monocytogenes]
gi|298359994|gb|ADI77576.1| truncated internalin A [Listeria monocytogenes]
gi|298360008|gb|ADI77583.1| truncated internalin A [Listeria monocytogenes]
gi|298360026|gb|ADI77592.1| truncated internalin A [Listeria monocytogenes]
gi|298360060|gb|ADI77609.1| truncated internalin A [Listeria monocytogenes]
gi|298360078|gb|ADI77618.1| truncated internalin A [Listeria monocytogenes]
gi|298360082|gb|ADI77620.1| truncated internalin A [Listeria monocytogenes]
gi|298360096|gb|ADI77627.1| truncated internalin A [Listeria monocytogenes]
gi|298360142|gb|ADI77650.1| truncated internalin A [Listeria monocytogenes]
gi|298360144|gb|ADI77651.1| truncated internalin A [Listeria monocytogenes]
gi|298360146|gb|ADI77652.1| truncated internalin A [Listeria monocytogenes]
gi|298360160|gb|ADI77659.1| truncated internalin A [Listeria monocytogenes]
gi|298360192|gb|ADI77675.1| truncated internalin A [Listeria monocytogenes]
gi|298360252|gb|ADI77705.1| truncated internalin A [Listeria monocytogenes]
gi|298360274|gb|ADI77716.1| truncated internalin A [Listeria monocytogenes]
gi|298360276|gb|ADI77717.1| truncated internalin A [Listeria monocytogenes]
gi|298360296|gb|ADI77727.1| truncated internalin A [Listeria monocytogenes]
gi|298360304|gb|ADI77731.1| truncated internalin A [Listeria monocytogenes]
gi|298360316|gb|ADI77737.1| truncated internalin A [Listeria monocytogenes]
gi|298360320|gb|ADI77739.1| truncated internalin A [Listeria monocytogenes]
gi|298360336|gb|ADI77747.1| truncated internalin A [Listeria monocytogenes]
gi|298360342|gb|ADI77750.1| truncated internalin A [Listeria monocytogenes]
gi|298360348|gb|ADI77753.1| truncated internalin A [Listeria monocytogenes]
gi|298360374|gb|ADI77766.1| truncated internalin A [Listeria monocytogenes]
gi|298360380|gb|ADI77769.1| truncated internalin A [Listeria monocytogenes]
gi|298360404|gb|ADI77781.1| truncated internalin A [Listeria monocytogenes]
gi|298360414|gb|ADI77786.1| truncated internalin A [Listeria monocytogenes]
gi|298360426|gb|ADI77792.1| truncated internalin A [Listeria monocytogenes]
gi|298360458|gb|ADI77808.1| truncated internalin A [Listeria monocytogenes]
gi|298360464|gb|ADI77811.1| truncated internalin A [Listeria monocytogenes]
gi|298360488|gb|ADI77823.1| truncated internalin A [Listeria monocytogenes]
gi|298360492|gb|ADI77825.1| truncated internalin A [Listeria monocytogenes]
gi|298360518|gb|ADI77838.1| truncated internalin A [Listeria monocytogenes]
gi|298360538|gb|ADI77848.1| truncated internalin A [Listeria monocytogenes]
gi|298360562|gb|ADI77860.1| truncated internalin A [Listeria monocytogenes]
gi|298360594|gb|ADI77876.1| truncated internalin A [Listeria monocytogenes]
gi|298360616|gb|ADI77887.1| truncated internalin A [Listeria monocytogenes]
gi|298360654|gb|ADI77906.1| truncated internalin A [Listeria monocytogenes]
gi|298360660|gb|ADI77909.1| truncated internalin A [Listeria monocytogenes]
gi|298360668|gb|ADI77913.1| truncated internalin A [Listeria monocytogenes]
gi|298360690|gb|ADI77924.1| truncated internalin A [Listeria monocytogenes]
gi|298360696|gb|ADI77927.1| truncated internalin A [Listeria monocytogenes]
gi|298360720|gb|ADI77939.1| truncated internalin A [Listeria monocytogenes]
gi|443428784|gb|AGC92191.1| truncated internalin A [Listeria monocytogenes]
gi|443428786|gb|AGC92192.1| truncated internalin A [Listeria monocytogenes]
gi|443428790|gb|AGC92194.1| truncated internalin A [Listeria monocytogenes]
gi|443428794|gb|AGC92196.1| truncated internalin A [Listeria monocytogenes]
gi|443428808|gb|AGC92203.1| truncated internalin A [Listeria monocytogenes]
gi|443428810|gb|AGC92204.1| truncated internalin A [Listeria monocytogenes]
gi|443428828|gb|AGC92213.1| truncated internalin A [Listeria monocytogenes]
gi|443428866|gb|AGC92232.1| truncated internalin A [Listeria monocytogenes]
gi|443428874|gb|AGC92236.1| truncated internalin A [Listeria monocytogenes]
gi|443428876|gb|AGC92237.1| truncated internalin A [Listeria monocytogenes]
Length = 699
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698868|gb|ACN19152.1| internalin A [Listeria monocytogenes]
gi|223698898|gb|ACN19172.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|219821270|gb|ACL37758.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 175/366 (47%), Gaps = 65/366 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLG---------------------ILTN 194
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L++++ Q+ S L LSGLT L + L + IS
Sbjct: 195 LDELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQIS 250
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + + GL++L SL L Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 251 N--ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ + N IS LT L +L +RI
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRI 349
Query: 434 TSAGLR 439
+ GL
Sbjct: 350 SELGLN 355
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 146/323 (45%), Gaps = 80/323 (24%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDSDMKPLSGLTNLKSLQISC 189
+ DL++ T + + +K + LE LN I + N +TD + PL LT L + ++
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNN 71
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD S +A L L LTL N Q++D +
Sbjct: 72 NQITDISPLANLTNLTGLTLFN---------------------------NQITD--IDPL 102
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S
Sbjct: 103 KNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDIS 157
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+SD S+ LA L++L+SL QI+D + L LT L L L G ++ D G L
Sbjct: 158 SNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--L 211
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ NL SL++ I +L+ L SGLT L L +
Sbjct: 212 ASLTNLTSLDVANN--------QISNLAPL-------------------SGLTKLTELEL 244
Query: 429 SNSRITSAGLRHLKPLKNLRSLT 451
++I+ ++ P++ L +LT
Sbjct: 245 GYNQIS-----NISPIEGLTALT 262
>gi|223698658|gb|ACN19012.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|371942104|gb|AEX60864.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|56797877|emb|CAH04900.1| internalin A [Listeria monocytogenes]
Length = 792
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 184/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L SNLT L+ N
Sbjct: 90 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANSSNLTGLTLF-N 143
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 144 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 195
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 196 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 240
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 241 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 283
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 284 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 339
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 340 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 386
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 387 ISDLTPLANL----TRITQLGLN 405
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 161/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T +S + A+ MK G N+ + DL++ T +
Sbjct: 16 WINTSNGTNAQAATITQDTPISQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 75
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 76 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 114
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ +L L L Q++D + LTNL L L S I D
Sbjct: 115 VDILMNNNQI--ADITPLANSSNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 170
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 171 --ISALSGLTSLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 223
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 224 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 257
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 258 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 307
Query: 447 LRSLT 451
L +LT
Sbjct: 308 LTALT 312
>gi|371942096|gb|AEX60860.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167862030|gb|ACA05714.1| InlA [Listeria monocytogenes]
Length = 576
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NHIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 30/257 (11%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314
L L + I D + L NLT NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNHITDIDPLKNLT---NLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQV 197
Query: 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 198 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNL 253
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 254 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS 308
Query: 435 SAGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 -----NISPLAGLTALT 320
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 78/177 (44%), Gaps = 50/177 (28%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNHITDIDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 462
IS L+GL SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|406831706|ref|ZP_11091300.1| peptidase M56 BlaR1 [Schlesneria paludicola DSM 18645]
Length = 1125
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 171/380 (45%), Gaps = 31/380 (8%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
GL+ G + LS +R++ I + G+++ A K L+ G + ++
Sbjct: 697 GLKFTEGRRKIQVLSLKRSDHIQSVGLRSGAAA---SKHPLDEANTRDGDIAAAIDRLRK 753
Query: 158 ESLNIK----------WCNCITD-SDMKPLSG---------LTNLKSLQISCSKV--TDS 195
+ + ++ W I D S P+SG ++ +SL + V T +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRTIPISGDEILVDIETISRDRSLDLHLKNVDLTPA 813
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+A L + ++ L L G + L ++S L + L L +DDG ++ + LE
Sbjct: 814 SVARLGATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQLANCVALE 872
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
S+++ I ++ +L L L+ + L +Q S L L+ + +L + +S T +
Sbjct: 873 SISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMTISTT---EQ 929
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNL 374
L S L+S++ D AL L + + IT++G A L ++L
Sbjct: 930 LTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNAGVAALVPLRHL 989
Query: 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
R L + + D I+ + +L L+L+ NC++ D+TL SG + L LN+ ++I+
Sbjct: 990 RVLALDRAQIDDRIADSIQKMPNLEWLDLN-NCDIGDRTLAAASGCSRLSYLNLGQTQIS 1048
Query: 435 SAGLRHLKPLKNLRSLTLES 454
+ GL + LKN+R+L+L S
Sbjct: 1049 NEGLAVIGKLKNIRNLSLWS 1068
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 160/366 (43%), Gaps = 23/366 (6%)
Query: 34 QDLCLGQYPGVNDK--WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
Q++ + ++ ND W+ VI + + +SG ++ L+ ++ S +SLD +
Sbjct: 754 QEIFVREFNSRNDPRYWIQVIVDLSRT---IPISGDEI----LVDIETISRDRSLDLHLK 806
Query: 92 -IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150
+ ++ + L ++++L +I + ++A + L + +L+L G+
Sbjct: 807 NVDLTPASVARLGATKHISTLELS-GRSINDELLQAISNL-PIGRLELGSGPYTDDGVKQ 864
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L + LES++I IT+ L L L+ + + S+ T +A L + L +
Sbjct: 865 LANCVALESISIA-GPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRRMT 923
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-RLTNLESLNLDSCGIGDEGL 269
+ T L L ++ DD + + LE ++ + I + G+
Sbjct: 924 IS---TTEQLTFDLGPFSELRSVDFTGATFGDDLTHALAEKCPRLEEASIRNSSITNAGV 980
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L L +L+ L L Q+ + + NLE ++L+ I D +L +G S L L
Sbjct: 981 AALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGCSRLSYL 1040
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLR-----SLEICGGG 383
NL QI++ GLA + L + +L L+ ++TD ++L+ + R L++ G
Sbjct: 1041 NLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHLQLDGTQ 1100
Query: 384 LTDAGV 389
+T G+
Sbjct: 1101 ITKNGI 1106
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+T A + +L L L L L+R Q+ D + ++ NLE L+L++C IGD L +G
Sbjct: 975 ITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQKMPNLEWLDLNNCDIGDRTLAAASGC 1034
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLK-----SL 329
L L L TQ+ + GL + L N+ +++L S ++D + L L + L
Sbjct: 1035 SRLSYLNLGQTQISNEGLAVIGKLKNIRNLSLWSNQQLTDECVSHLKQLPDYRMKFVLHL 1094
Query: 330 NLDARQITDTGLAALTS 346
LD QIT G+ L +
Sbjct: 1095 QLDGTQITKNGILELQA 1111
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 30/241 (12%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+L L+ + ++ +L L I DE L ++ L + LEL G
Sbjct: 803 LHLKNVDLTPASVARLGATKHISTLELSGRSINDELLQAISNL-PIGRLELGSGPYTDDG 861
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
++ L+ LESI+++ I++ L L L+ + L + Q T LA L + L
Sbjct: 862 VKQLANCVALESISIAGPSITNDCFTHLVRLPRLRGVGLRSSQFTSGVLATLARIPDLRR 921
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+ + T+ L F LRS++ G D DL+ L++ C ++
Sbjct: 922 MTI---STTEQLTFDLGPFSELRSVDFTGATFGD-------DLTH----ALAEKCPRLEE 967
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
++ NS IT+AG+ L PL++LR L L+ ++ +Q +PN
Sbjct: 968 A-------------SIRNSSITNAGVAALVPLRHLRVLALDRAQIDDRIADSIQK--MPN 1012
Query: 473 L 473
L
Sbjct: 1013 L 1013
>gi|371942142|gb|AEX60883.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942110|gb|AEX60867.1| internaline [Listeria monocytogenes]
gi|371942112|gb|AEX60868.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|219821387|gb|ACL37836.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 175/366 (47%), Gaps = 65/366 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLG---------------------ILTN 194
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L + L IS
Sbjct: 195 LDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQIS 250
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 251 N--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ N IS LT L +L +RI
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRI 349
Query: 434 TSAGLR 439
T GL
Sbjct: 350 TQLGLN 355
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 144/323 (44%), Gaps = 80/323 (24%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDSDMKPLSGLTNLKSLQISC 189
+ DL++ T + + +K + LE LN I + N +TD + PL LT L + ++
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNN 71
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD S +A L L LTL N Q++D +
Sbjct: 72 NQITDISPLANLTNLTGLTLFN---------------------------NQITD--IDPL 102
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S
Sbjct: 103 KNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDIS 157
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+SD S+ LA L++L+SL QI+D + L LT L L L G ++ D G L
Sbjct: 158 SNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--L 211
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ NL L++ I +L+ L SGLT L L +
Sbjct: 212 ASLTNLTDLDLANN--------QISNLAPL-------------------SGLTKLTELKL 244
Query: 429 SNSRITSAGLRHLKPLKNLRSLT 451
++I+ ++ PL L +LT
Sbjct: 245 GANQIS-----NISPLAGLTALT 262
>gi|22347554|gb|AAM95922.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|223698892|gb|ACN19168.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|223698835|gb|ACN19130.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|112961790|gb|ABI28546.1| internalin A [Listeria monocytogenes]
Length = 693
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|371942084|gb|AEX60854.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698643|gb|ACN19002.1| internalin A [Listeria monocytogenes]
gi|223698646|gb|ACN19004.1| internalin A [Listeria monocytogenes]
gi|223698670|gb|ACN19020.1| internalin A [Listeria monocytogenes]
gi|223698673|gb|ACN19022.1| internalin A [Listeria monocytogenes]
gi|223698718|gb|ACN19052.1| internalin A [Listeria monocytogenes]
gi|223698754|gb|ACN19076.1| internalin A [Listeria monocytogenes]
gi|223698757|gb|ACN19078.1| internalin A [Listeria monocytogenes]
gi|223698796|gb|ACN19104.1| internalin A [Listeria monocytogenes]
gi|223698826|gb|ACN19124.1| internalin A [Listeria monocytogenes]
gi|223698829|gb|ACN19126.1| internalin A [Listeria monocytogenes]
gi|223698832|gb|ACN19128.1| internalin A [Listeria monocytogenes]
gi|223698862|gb|ACN19148.1| internalin A [Listeria monocytogenes]
gi|223698895|gb|ACN19170.1| internalin A [Listeria monocytogenes]
gi|223698925|gb|ACN19190.1| internalin A [Listeria monocytogenes]
gi|223698928|gb|ACN19192.1| internalin A [Listeria monocytogenes]
gi|223698931|gb|ACN19194.1| internalin A [Listeria monocytogenes]
gi|223698934|gb|ACN19196.1| internalin A [Listeria monocytogenes]
gi|223698937|gb|ACN19198.1| internalin A [Listeria monocytogenes]
gi|223698940|gb|ACN19200.1| internalin A [Listeria monocytogenes]
gi|223698943|gb|ACN19202.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|22347572|gb|AAM95931.1| internalin A precursor [Listeria monocytogenes]
Length = 741
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 175/366 (47%), Gaps = 65/366 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 57 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 110
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 111 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 164
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 165 DISV-----LAKLT--NLESLIATNNQISDITPLG---------------------ILTN 196
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L + L IS
Sbjct: 197 LDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQIS 252
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 253 N--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 306
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ N IS LT L +L +RI
Sbjct: 307 LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRI 351
Query: 434 TSAGLR 439
T GL
Sbjct: 352 TQLGLN 357
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 152/338 (44%), Gaps = 84/338 (24%)
Query: 124 MKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDSDMK 174
MK G N+ + DL++ T + + +K + LE LN I + N +TD +
Sbjct: 1 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD--IT 58
Query: 175 PLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
PL LT L + ++ +++TD S +A L L LTL N
Sbjct: 59 PLKDLTKLVDIVMNNNQITDISPLANLTNLTGLTLFN----------------------- 95
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
Q++D + LTNL L L S I D + L+GL NL+ L + QV + L
Sbjct: 96 ----NQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDL 144
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ L+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+L
Sbjct: 145 KPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNL 197
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
D L + G L D G + L++LT L+L+ N
Sbjct: 198 D---------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISN 231
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +SGLT L L + ++I+ ++ PL L +LT
Sbjct: 232 LAPLSGLTKLTELKLGANQIS-----NISPLAGLTALT 264
>gi|371942074|gb|AEX60849.1| internaline [Listeria monocytogenes]
gi|371942102|gb|AEX60863.1| internaline [Listeria monocytogenes]
gi|371942114|gb|AEX60869.1| internaline [Listeria monocytogenes]
gi|371942124|gb|AEX60874.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942126|gb|AEX60875.1| internaline [Listeria monocytogenes]
Length = 790
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|223698622|gb|ACN18988.1| internalin A [Listeria monocytogenes]
gi|223698634|gb|ACN18996.1| internalin A [Listeria monocytogenes]
gi|223698694|gb|ACN19036.1| internalin A [Listeria monocytogenes]
gi|223698712|gb|ACN19048.1| internalin A [Listeria monocytogenes]
gi|223698745|gb|ACN19070.1| internalin A [Listeria monocytogenes]
gi|223698751|gb|ACN19074.1| internalin A [Listeria monocytogenes]
gi|223698766|gb|ACN19084.1| internalin A [Listeria monocytogenes]
gi|223698769|gb|ACN19086.1| internalin A [Listeria monocytogenes]
gi|223698772|gb|ACN19088.1| internalin A [Listeria monocytogenes]
gi|223698775|gb|ACN19090.1| internalin A [Listeria monocytogenes]
gi|223698778|gb|ACN19092.1| internalin A [Listeria monocytogenes]
gi|223698787|gb|ACN19098.1| internalin A [Listeria monocytogenes]
gi|223698793|gb|ACN19102.1| internalin A [Listeria monocytogenes]
gi|223698799|gb|ACN19106.1| internalin A [Listeria monocytogenes]
gi|223698802|gb|ACN19108.1| internalin A [Listeria monocytogenes]
gi|223698805|gb|ACN19110.1| internalin A [Listeria monocytogenes]
gi|223698817|gb|ACN19118.1| internalin A [Listeria monocytogenes]
gi|223698859|gb|ACN19146.1| internalin A [Listeria monocytogenes]
gi|223698865|gb|ACN19150.1| internalin A [Listeria monocytogenes]
gi|223698979|gb|ACN19226.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|130774825|gb|ABO32425.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|223698664|gb|ACN19016.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|130774793|gb|ABO32411.1| InlA [Listeria monocytogenes]
gi|194239384|emb|CAQ76832.1| internalin A [Listeria monocytogenes]
Length = 797
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|371942138|gb|AEX60881.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|340052077|emb|CBY84390.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|385800049|ref|YP_005836453.1| hypothetical protein [Halanaerobium praevalens DSM 2228]
gi|309389413|gb|ADO77293.1| conserved repeat domain protein [Halanaerobium praevalens DSM 2228]
Length = 2607
Score = 79.3 bits (194), Expect = 4e-12, Method: Composition-based stats.
Identities = 104/330 (31%), Positives = 146/330 (44%), Gaps = 65/330 (19%)
Query: 32 ALQDLCLGQYPGVNDK----WMDVIASQGSSLLSVDLS-GSDVTDSGLIHLKDCSNLQSL 86
A +D YPG+NDK + VI S+L L G D G I L + NL +L
Sbjct: 1017 AFKDQSGNAYPGMNDKTSWNFKTVINIPDSNLKQQILDRGIDNNGDGEISLSESVNLYTL 1076
Query: 87 DFNFCIQISD-GGLEH--------------------LRGLSNLTSLSFRRNNAITAQGMK 125
+F +ISD GLEH L+ L+NL SL+ N +
Sbjct: 1077 K-SFYTEISDLSGLEHFTSLDKLALYGGKKISDLSPLQNLTNLNSLTLTEN---VINNID 1132
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A L NL +LDL N I SD+ L+ LT L L
Sbjct: 1133 YLANLTNLTRLDLSS-------------------------NKI--SDISVLANLTKLTEL 1165
Query: 186 QISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
+ + +TD S ++ L+ L +L L+LE ++ +DSLS L L YL+L + D
Sbjct: 1166 VLGSNIITDESDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVED-- 1221
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
LT L LNL+S I DE L L+ +L L L + S + ++ LTNL+
Sbjct: 1222 ISSLKNLTALNFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTNLKY 1281
Query: 305 INLSFTGISDGSLRKLAGLSSLKSL-NLDA 333
+ L + ISD +R L+ L+ L SL NL+A
Sbjct: 1282 LYLGYNEISD--IRALSDLTKLTSLYNLNA 1309
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 20/259 (7%)
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
LS NL +L+ ++++D SG+ + L KL L + LS L +L N
Sbjct: 1067 LSESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYG-------GKKISDLSPLQNL--TN 1117
Query: 235 LNRCQLSDD---GCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 290
LN L+++ + + LTNL L+L S I D L NLT L L + S+
Sbjct: 1118 LNSLTLTENVINNIDYLANLTNLTRLDLSSNKISDISVLANLTKLTEL--VLGSNIITDE 1175
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S L L LT LE ++L IS+ + L+ LS L L+L + + D +++L +LT L
Sbjct: 1176 SDLSVLENLTELEHLSLEENEISN--IDSLSNLSKLNYLHLGSTNVED--ISSLKNLTAL 1231
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L+L I D L NFK+L L + + + + DL++L L L N
Sbjct: 1232 NFLNLNSTYINDEDLTILSNFKSLTELYLQSSNDKISDISVVADLTNLKYLYLGYNEISD 1291
Query: 411 DKTLELISGLTGLVSLNVS 429
+ L ++ LT L +LN +
Sbjct: 1292 IRALSDLTKLTSLYNLNAN 1310
Score = 56.2 bits (134), Expect = 4e-05, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 14/222 (6%)
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGI 312
ES+NL + + +L+GL + L+ G S L L LTNL S+ L+ I
Sbjct: 1069 ESVNLYTLKSFYTEISDLSGLEHFTSLDKLALYGGKKISDLSPLQNLTNLNSLTLTENVI 1128
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNF 371
++ + LA L++L L+L + +I+D ++ L +LT LT L L ITD S + L N
Sbjct: 1129 NN--IDYLANLTNLTRLDLSSNKISD--ISVLANLTKLTELVLGSNIITDESDLSVLENL 1184
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L L L + + +I LS+L+ LN + + + + LT L LN++++
Sbjct: 1185 TELEHLS-----LEENEISNIDSLSNLSKLNYLHLGSTNVEDISSLKNLTALNFLNLNST 1239
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
I L L K+L L L+S +DI + DL NL
Sbjct: 1240 YINDEDLTILSNFKSLTELYLQSSNDKISDISVVA--DLTNL 1279
>gi|299067411|emb|CBJ38610.1| leucine-rich-repeat type III effector protein (GALA6) [Ralstonia
solanacearum CMR15]
Length = 620
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 144/336 (42%), Gaps = 26/336 (7%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L SLN+ + N I D L+ L SL S + + ++G L L LNL
Sbjct: 260 PLTSLNL-YYNEIGDDGAGALAASKTLTSLDASKNGIGNAGAEALAKNTVLRELNLAHNM 318
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ + +L+ SL L+L +L D G + + +L SL +D IG G L
Sbjct: 319 IGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVDHNEIGGGGAQALARH 378
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L+LS +G G L T L +NLSF GI S LA SL L L+
Sbjct: 379 ATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFCGIDSHSACALACNKSLAELYLNGNW 438
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--------- 386
I D G L LT LDL I ++GA L + L SL++ G G+ D
Sbjct: 439 IGDYGALELAKNRTLTLLDLSRNGIRNAGAEALGGNQALTSLKLAGNGIDDDGAAALARH 498
Query: 387 ---------------AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
G +H+ ++L L+LSQN + E +S T L++LNVS++
Sbjct: 499 PRLTTLDLSRNRIGAEGARHLAQSATLAELDLSQN-RIGPDGAEALSQSTALITLNVSHN 557
Query: 432 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
I AG R L +L SL + + K L++
Sbjct: 558 AIGEAGARSLADSASLTSLDARRNGIGEDGAKVLEA 593
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 157/368 (42%), Gaps = 29/368 (7%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L S++L +++ D G L L SLD + I + G E L + L L+ +
Sbjct: 259 APLTSLNLYYNEIGDDGAGALAASKTLTSLDASKN-GIGNAGAEALAKNTVLRELNLA-H 316
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N I G++A AG +L +LDL G + L G L SL + N I + L
Sbjct: 317 NMIGTPGVRALAGNTSLTELDLGGNRLGDAGALELAGNRSLLSLKVD-HNEIGGGGAQAL 375
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L SL +S + + G L L++LNL C +DS SA
Sbjct: 376 ARHATLTSLDLSYNAIGLWGAGALGANTTLSVLNLSFC-----GIDSHSA---------- 420
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
C L+ C K +L L L+ IGD G + L L L+LS + ++G L
Sbjct: 421 -CALA---CNK-----SLAELYLNGNWIGDYGALELAKNRTLTLLDLSRNGIRNAGAEAL 471
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G L S+ L+ GI D LA L +L+L +I G L L LDL
Sbjct: 472 GGNQALTSLKLAGNGIDDDGAAALARHPRLTTLDLSRNRIGAEGARHLAQSATLAELDLS 531
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTL 414
RI GA L L +L + + +AG + + D +SLT L+ +N D K L
Sbjct: 532 QNRIGPDGAEALSQSTALITLNVSHNAIGEAGARSLADSASLTSLDARRNGIGEDGAKVL 591
Query: 415 ELISGLTG 422
E + LTG
Sbjct: 592 EANTRLTG 599
>gi|404412528|ref|YP_006698115.1| internalin A [Listeria monocytogenes SLCC7179]
gi|298360000|gb|ADI77579.1| internalin A [Listeria monocytogenes]
gi|298360676|gb|ADI77917.1| internalin A [Listeria monocytogenes]
gi|404238227|emb|CBY59628.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC7179]
gi|443428842|gb|AGC92220.1| internalin A [Listeria monocytogenes]
gi|443428848|gb|AGC92223.1| internalin A [Listeria monocytogenes]
gi|443428858|gb|AGC92228.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|22347556|gb|AAM95923.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|223698655|gb|ACN19010.1| internalin A [Listeria monocytogenes]
gi|223698913|gb|ACN19182.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|223698607|gb|ACN18978.1| internalin A [Listeria monocytogenes]
gi|223698703|gb|ACN19042.1| internalin A [Listeria monocytogenes]
gi|223698760|gb|ACN19080.1| internalin A [Listeria monocytogenes]
gi|223698907|gb|ACN19178.1| internalin A [Listeria monocytogenes]
gi|223698910|gb|ACN19180.1| internalin A [Listeria monocytogenes]
gi|223698916|gb|ACN19184.1| internalin A [Listeria monocytogenes]
gi|223698919|gb|ACN19186.1| internalin A [Listeria monocytogenes]
gi|223698964|gb|ACN19216.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|150371858|dbj|BAF65718.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 186/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LGSLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLISLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 462
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|124002318|ref|ZP_01687171.1| leucine-rich protein [Microscilla marina ATCC 23134]
gi|123992147|gb|EAY31515.1| leucine-rich protein [Microscilla marina ATCC 23134]
Length = 1282
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 205/466 (43%), Gaps = 76/466 (16%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L +D+ + +L L+SL+ F S LE+L L+ LT LS N
Sbjct: 219 LKQLELEENDI--KKIENLHHLPQLKSLNLRFN---SFEKLENLDALTELTELSLGYNGI 273
Query: 119 ITAQGMKA----------FAGLINLVKLD----LERCTRIHGGLVNLKGLMKLESLNIKW 164
+G++ F + L LD LE+ H G+ ++ L KL L
Sbjct: 274 SKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHTGIKKIENLDKLTKLTHLS 333
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDS 223
C + ++ L LT L SL + +K+ S I L+ L LT L ++G V LD+
Sbjct: 334 LMCSKVTKIENLEALTQLTSLSLHATKI--SKIENLEALTNLTKLRVDGNKVAKIENLDN 391
Query: 224 LSALGSLF-----------YLNLNRCQLSDDGCEKFSRLTNLESL----NLDSCGIGDEG 268
L+ L L +L + + D G +++ NLE L LD G E
Sbjct: 392 LTQLDDLMLGGNPISKIENLGHLIKLRKLDLGGLAITKIENLEGLRTLEQLDLGGSQIET 451
Query: 269 LVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ NL GL L+ LEL T+V L HL LT L+ LS T I+ + L GL LK
Sbjct: 452 IENLEGLTGLQKLELRATKVSKIENLNHLPALTELD---LSETAIT--KIEGLTGLEGLK 506
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----SGAAYLRN----------FKN 373
L+L +IT + L L+ L L L + ++ +G LR +N
Sbjct: 507 ELSLSKNKITK--IENLAGLSKLEKLSLCASNLSKIENLTGLPKLRELCLEKNAIECLEN 564
Query: 374 LRSLEICGG-GLTDAGVKHIKD---LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
LR L L + + HI+ + L LNLSQN + +E ++G+TGL L++S
Sbjct: 565 LRGLPALKELDLNNNQITHIQPNALPTQLAELNLSQNQLI---KVEHLAGVTGLTELDLS 621
Query: 430 NSRITSAGLRHLKPLKNLRSL-TLESCKVTANDIKRLQS-RDLPNL 473
+ I+ ++N L LE+ ++ N I RL++ LPNL
Sbjct: 622 ENNISK--------IENFEDLPALETLDLSYNKITRLENLTALPNL 659
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 170/399 (42%), Gaps = 94/399 (23%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
NL++L +++ + + L NLT L ++ LI L KLDL
Sbjct: 364 IENLEALTNLTKLRVDGNKVAKIENLDNLTQLDDLMLGGNPISKIENLGHLIKLRKLDL- 422
Query: 140 RCTRIHGGLV-----NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GGL NL+GL LE L++ T ++ L GLT L+ L++ +KV
Sbjct: 423 ------GGLAITKIENLEGLRTLEQLDLGGSQIET---IENLEGLTGLQKLELRATKV-- 471
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
S I L L LT L+L +T ++ L+ L L L+L++ +++ E + L+ L
Sbjct: 472 SKIENLNHLPALTELDLSETAITK--IEGLTGLEGLKELSLSKNKITK--IENLAGLSKL 527
Query: 255 ESLNLDSCGIGD--------------------EGLVNLTGLCNLKCLELSDTQVGSS--- 291
E L+L + + E L NL GL LK L+L++ Q+
Sbjct: 528 EKLSLCASNLSKIENLTGLPKLRELCLEKNAIECLENLRGLPALKELDLNNNQITHIQPN 587
Query: 292 -----------------GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
+ HL+G+T L ++LS IS + L +L++L+L
Sbjct: 588 ALPTQLAELNLSQNQLIKVEHLAGVTGLTELDLSENNIS--KIENFEDLPALETLDLSYN 645
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+IT L LT+L L ++++ +IT+ TDA + +++
Sbjct: 646 KITR--LENLTALPNLREVNIYQNQITEIA--------------------TDAVTRQLQE 683
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+L QN T+E++ TGL ++V N++I
Sbjct: 684 ------LDLEQN---QISTIEILVNFTGLSQVDVGNNQI 713
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 111/249 (44%), Gaps = 40/249 (16%)
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
S D E + LTNL+ L+L+ I E + NL L L+ L L + G +L+ LT
Sbjct: 96 SIDRIENIAHLTNLQYLDLEENDI--EVIENLDHLARLEYLNLRGNAIEKIG--NLNALT 151
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAALTSLTGLTHLDL---- 355
L + LS SL ++ L+ LK L NLD R+ + L LT LT LDL
Sbjct: 152 QLVHLELS-----SNSLERVENLNHLKHLQNLDLRENNIKKIENLAGLTALTRLDLGYNG 206
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
FG L N L+ LE+ + ++++ L L LNL N + + LE
Sbjct: 207 FGK------IEGLHNLPRLKQLELEENDIKK--IENLHHLPQLKSLNLRFN---SFEKLE 255
Query: 416 LISGLTGLVSLNVSNSRITS-AGLRHLKPLK-------------NLRSLT-LESCKVTAN 460
+ LT L L++ + I+ GL L LK NL +LT LE +
Sbjct: 256 NLDALTELTELSLGYNGISKIEGLEKLTKLKMLGLMFNRVTKLENLDTLTELEKLWMNHT 315
Query: 461 DIKRLQSRD 469
IK++++ D
Sbjct: 316 GIKKIENLD 324
>gi|298359882|gb|ADI77520.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|47096455|ref|ZP_00234048.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|254913677|ref|ZP_05263689.1| internalin A [Listeria monocytogenes J2818]
gi|254937992|ref|ZP_05269689.1| internalin A [Listeria monocytogenes F6900]
gi|386046091|ref|YP_005964423.1| internalin A [Listeria monocytogenes J0161]
gi|47015176|gb|EAL06116.1| internalin A precursor [Listeria monocytogenes str. 1/2a F6854]
gi|194239410|emb|CAQ76845.1| internalin A [Listeria monocytogenes]
gi|223006792|gb|ACM69353.1| internalin A [Listeria monocytogenes]
gi|223006794|gb|ACM69354.1| internalin A [Listeria monocytogenes]
gi|258610604|gb|EEW23212.1| internalin A [Listeria monocytogenes F6900]
gi|293591690|gb|EFG00025.1| internalin A [Listeria monocytogenes J2818]
gi|298359952|gb|ADI77555.1| internalin A [Listeria monocytogenes]
gi|298359956|gb|ADI77557.1| internalin A [Listeria monocytogenes]
gi|298359986|gb|ADI77572.1| internalin A [Listeria monocytogenes]
gi|298360086|gb|ADI77622.1| internalin A [Listeria monocytogenes]
gi|298360130|gb|ADI77644.1| internalin A [Listeria monocytogenes]
gi|298360206|gb|ADI77682.1| internalin A [Listeria monocytogenes]
gi|298360572|gb|ADI77865.1| internalin A [Listeria monocytogenes]
gi|298360644|gb|ADI77901.1| internalin A [Listeria monocytogenes]
gi|345533082|gb|AEO02523.1| internalin A [Listeria monocytogenes J0161]
gi|443428774|gb|AGC92186.1| internalin A [Listeria monocytogenes]
gi|443428776|gb|AGC92187.1| internalin A [Listeria monocytogenes]
gi|443428868|gb|AGC92233.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|298359950|gb|ADI77554.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|71407089|ref|XP_806036.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70869660|gb|EAN84185.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 638
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 41/395 (10%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
L + +++ +++L +C +L+ + N C + LE L L LT LS N IT +G
Sbjct: 3 LCNTPLSEVMMLYLSECVSLERVVVNSCRGLR--SLECLSSLQRLTELSLL-NMGITEEG 59
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + +L + L+ C MKL+ +N L L L+
Sbjct: 60 LAFISSCNSLRHIQLDNC-------------MKLQGINC-------------LGSLIGLR 93
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L +S ++V+D GI L L+ L L L ++ ++ + L L L+L ++D+
Sbjct: 94 TLSVSRNRVSDDGIRSLSNLRNLEQLRLVSFNRLSS-VEPVLCLDKLLELDLTENWVTDE 152
Query: 244 GCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
GC + ++ L L SC + D + L +L+ L+LS T V S+ L+ L+ L
Sbjct: 153 GCAALANCGQIQKLKLASCRCVSDVRWI--CALTSLRFLDLSKTHVRSADLQLLTMCQRL 210
Query: 303 ESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-I 360
E +++ S +G+ D S + GL SL L+L I D G ++ T LT L L R +
Sbjct: 211 EELHVASCSGVKDASF--VEGLLSLGHLDLTDTSIKDAGTQSIRKCTALTFLSLQDCRFL 268
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD ++ +NL +L + G + DA + + + L +L+L LTD + + L
Sbjct: 269 TD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD--VRCLREL 324
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
L SL++S + +T G+ + +L + L C
Sbjct: 325 KALKSLDLSGTYVTDEGVSDVSQCISLERIDLSEC 359
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 169/360 (46%), Gaps = 45/360 (12%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+T+ GL + C++L+ + + C+++ G+ L L L +LS RN ++ G+++ +
Sbjct: 55 ITEEGLAFISSCNSLRHIQLDNCMKLQ--GINCLGSLIGLRTLSVSRNR-VSDDGIRSLS 111
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L NL +L L R+ S ++P+ L L L ++
Sbjct: 112 NLRNLEQLRLVSFNRL--------------------------SSVEPVLCLDKLLELDLT 145
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ VTD G A L ++ L L C + + + AL SL +L+L++ + +
Sbjct: 146 ENWVTDEGCAALANCGQIQKLKLASCRCVSD-VRWICALTSLRFLDLSKTHVRSADLQLL 204
Query: 249 SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQV---GSSGLRHLSGLTNLES 304
+ LE L++ SC G+ D V GL +L L+L+DT + G+ +R + LT L
Sbjct: 205 TMCQRLEELHVASCSGVKDASFVE--GLLSLGHLDLTDTSIKDAGTQSIRKCTALTFLSL 262
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDS 363
+ F ++D ++ + L +L +LNL+ ++ D + L T L L L +TD
Sbjct: 263 QDCRF--LTD--IQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRHCLFLTD- 317
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
LR K L+SL++ G +TD GV + SL ++LS+ C +T E + LT L
Sbjct: 318 -VRCLRELKALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTAL 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 117/446 (26%), Positives = 193/446 (43%), Gaps = 86/446 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF----- 113
LL +DL+ + VTD G L +C +Q L C +SD +R + LTSL F
Sbjct: 139 LLELDLTENWVTDEGCAALANCGQIQKLKLASCRCVSD-----VRWICALTSLRFLDLSK 193
Query: 114 -----------------RRNNAITAQGMK--AFA-GLINLVKLDLERCTRIHGGLVNLKG 153
+ + G+K +F GL++L LDL + G +++
Sbjct: 194 THVRSADLQLLTMCQRLEELHVASCSGVKDASFVEGLLSLGHLDLTDTSIKDAGTQSIRK 253
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L L+++ C +T D++ + L NL +L + ++V D+ I L KL +L+L
Sbjct: 254 CTALTFLSLQDCRFLT--DIQFVEPLRNLLNLNLEGTEVVDANIIPLMHCTKLEVLSLRH 311
Query: 214 C--PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI--GDEGL 269
C CL L AL S L+L+ ++D+G S+ +LE ++L C + E L
Sbjct: 312 CLFLTDVRCLRELKALKS---LDLSGTYVTDEGVSDVSQCISLERIDLSECCLITHFEFL 368
Query: 270 VNLTGLCNL---KCLELSDTQVGSSG---------LRHLSGLTNLES-----INLSFTGI 312
LT L ++ + L T +G SG + L + LE+ ++L + I
Sbjct: 369 RPLTALRHVIADRMNVLDVTGLGGSGSVERVSIADCKRLGSMGMLEAPRLLDLSLKKSAI 428
Query: 313 SDGSLRK-LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+D + L SL+ LNL + IT+ L+A+ L LT L + +IT+ A++
Sbjct: 429 TDSGIHSVLLRCHSLRRLNLQNCTSITE--LSAVAQLPSLTELLVRNMKITNKSVAFVAR 486
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L++ I D++SL L+ LV L++S
Sbjct: 487 CATLEKLQM-------VECVEITDVNSLKYLH-------------------RLVELDLSR 520
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCK 456
+ +TS G+ L NL+ L L C+
Sbjct: 521 TSVTSGGIVGLARCYNLKKLNLSGCR 546
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 37/231 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLSG+ VTD G+ + C +L+ +D + C I+ E LR L+ L + R N
Sbjct: 326 ALKSLDLSGTYVTDEGVSDVSQCISLERIDLSECCLITH--FEFLRPLTALRHVIADRMN 383
Query: 118 AITAQGMKAFAGLINLVKLDLERCTR--------------------------IHGGLVNL 151
+ G+ G ++ ++ + C R IH L+
Sbjct: 384 VLDVTGL---GGSGSVERVSIADCKRLGSMGMLEAPRLLDLSLKKSAITDSGIHSVLLRC 440
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L + LN++ NC + +++ ++ L +L L + K+T+ +A++ L L +
Sbjct: 441 HSLRR---LNLQ--NCTSITELSAVAQLPSLTELLVRNMKITNKSVAFVARCATLEKLQM 495
Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
C V ++SL L L L+L+R ++ G +R NL+ LNL C
Sbjct: 496 VEC-VEITDVNSLKYLHRLVELDLSRTSVTSGGIVGLARCYNLKKLNLSGC 545
>gi|313485072|gb|ADR53007.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|167861888|gb|ACA05643.1| InlA [Listeria monocytogenes]
gi|194326163|emb|CAQ77240.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|298360230|gb|ADI77694.1| internalin A [Listeria monocytogenes]
gi|298360588|gb|ADI77873.1| internalin A [Listeria monocytogenes]
gi|298360606|gb|ADI77882.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|290972876|ref|XP_002669176.1| predicted protein [Naegleria gruberi]
gi|284082720|gb|EFC36432.1| predicted protein [Naegleria gruberi]
Length = 390
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 7/285 (2%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE-GCPVTAACLDSLSALGSLFYLNLNR 237
L L SL IS ++D IA + L L++ +T + +S L L+++
Sbjct: 26 LKYLTSLDISNKHLSDEYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLNKLSVHS 85
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+S G E SR+ NL LN+ + E + ++ + L +++S +G+ L +
Sbjct: 86 MTISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTDELGLIC 145
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L L + + I+ + + L L L+++ QI G+ + L LTHL +
Sbjct: 146 KLEKLRILKANGNQINSDGAKLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHLAVGS 205
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
RI D G Y+ + L L I G+ GVK++ LS L L++ N + KT +LI
Sbjct: 206 NRIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKTTKLI 265
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
S +T L SL++S++ ++ K + NL+ LT ++ ND+
Sbjct: 266 SEMTQLRSLDISDNYFGNS----FKCITNLKQLT--KLNISENDL 304
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 2/280 (0%)
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
I+ + +S + NL L I + + I ++ +++LT +++ + L +
Sbjct: 87 TISTKGFELISRMKNLTDLNIMQTVLDIEKIKFISEMEQLTAIDISFNNIGTDELGLICK 146
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
L L L N Q++ DG + L +L L++++ IG EG+ + L +L L +
Sbjct: 147 LEKLRILKANGNQINSDGAKLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHLAVGSN 206
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
++ GL+++ L L +++ GI ++ L+ LS L +L++ + I + L S
Sbjct: 207 RIKDKGLKYIGRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKTTKLIS 266
Query: 347 -LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+T L LD+ +S + N K L L I LTD I LS LT L++
Sbjct: 267 EMTQLRSLDISDNYFGNSFKC-ITNLKQLTKLNISENDLTDKFASSISQLSQLTYLDIRG 325
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
N + + E+ L L L++S+++ + L K
Sbjct: 326 NEIIYEGFKEICEKLEYLTYLDLSDNQTNEKAISFLASFK 365
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 13/330 (3%)
Query: 50 DVIASQGS--SLLSVDLS-GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS 106
+ IA+ G+ +L +D+S SD+T+ G+ + + S L L + + IS G E + +
Sbjct: 42 EYIATIGNWDTLKELDVSLNSDITERGIGIISEKSLLNKLSVH-SMTISTKGFELISRMK 100
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
NLT L+ + + + +K + + L +D+ + G L + KLE L I N
Sbjct: 101 NLTDLNIMQT-VLDIEKIKFISEMEQLTAIDISFN---NIGTDELGLICKLEKLRILKAN 156
Query: 167 --CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
I K + L +L L I+ +++ G+ + L+ LT L + + L +
Sbjct: 157 GNQINSDGAKLIKDLKHLTHLSINNNQIGKEGVKCIGELEHLTHLAVGSNRIKDKGLKYI 216
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLEL 283
L L +L++ + G + S L+ L +L++ S GI L + + L+ L++
Sbjct: 217 GRLQRLNFLSIYDNGIKGKGVKYLSSLSRLVTLDIHSNGIDSSKTTKLISEMTQLRSLDI 276
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
SD G+S + ++ L L +N+S ++D ++ LS L L++ +I G
Sbjct: 277 SDNYFGNS-FKCITNLKQLTKLNISENDLTDKFASSISQLSQLTYLDIRGNEIIYEGFKE 335
Query: 344 L-TSLTGLTHLDLFGARITDSGAAYLRNFK 372
+ L LT+LDL + + ++L +FK
Sbjct: 336 ICEKLEYLTYLDLSDNQTNEKAISFLASFK 365
>gi|219821285|gb|ACL37768.1| internalin A [Listeria monocytogenes]
gi|219821315|gb|ACL37788.1| internalin A [Listeria monocytogenes]
gi|219821321|gb|ACL37792.1| internalin A [Listeria monocytogenes]
gi|219821327|gb|ACL37796.1| internalin A [Listeria monocytogenes]
gi|219821345|gb|ACL37808.1| internalin A [Listeria monocytogenes]
Length = 742
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 175/366 (47%), Gaps = 65/366 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + L NL
Sbjct: 55 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNL 108
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L+L T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 109 NRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 162
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 163 DISV-----LAKLT--NLESLIATNNQISDITPLG---------------------ILTN 194
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L++++ Q+ S L LSGLT L + L + IS
Sbjct: 195 LDELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQIS 250
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + + GL++L SL L Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 251 N--ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTK 304
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ + N IS LT L +L +RI
Sbjct: 305 LQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRI 349
Query: 434 TSAGLR 439
+ GL
Sbjct: 350 SELGLN 355
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 146/323 (45%), Gaps = 80/323 (24%)
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDSDMKPLSGLTNLKSLQISC 189
+ DL++ T + + +K + LE LN I + N +TD + PL LT L + ++
Sbjct: 14 QTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD--ITPLKDLTKLVDIVMNN 71
Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++TD S +A L L LTL N Q++D +
Sbjct: 72 NQITDISPLANLTNLTGLTLFN---------------------------NQITD--IDPL 102
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
LTNL L L S I D + L+GL NL+ L + QV + L+ L+ LT LE +++S
Sbjct: 103 KNLTNLNRLELSSNTISD--ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDIS 157
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
+SD S+ LA L++L+SL QI+D + L LT L L L G ++ D G L
Sbjct: 158 SNKVSDISV--LAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--L 211
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
+ NL SL++ I +L+ L SGLT L L +
Sbjct: 212 ASLTNLTSLDVANN--------QISNLAPL-------------------SGLTKLTELEL 244
Query: 429 SNSRITSAGLRHLKPLKNLRSLT 451
++I+ ++ P++ L +LT
Sbjct: 245 GYNQIS-----NISPIEGLTALT 262
>gi|313485070|gb|ADR53006.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|290350830|dbj|BAI78336.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLTPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 76/367 (20%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
G + L++LT L+L+ N NLT +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQISNLTP-----LSGLTKLTELKLGANQIS-----NISPL 313
Query: 445 KNLRSLT 451
L +LT
Sbjct: 314 AGLTALT 320
>gi|294358395|gb|ADE73850.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|194239392|emb|CAQ76836.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|148607492|gb|ABQ95522.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|371942116|gb|AEX60870.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|371942100|gb|AEX60862.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|223698682|gb|ACN19028.1| internalin A [Listeria monocytogenes]
Length = 712
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 8 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 60
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 61 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 113
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 114 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 169
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 170 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 223
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 ----NISPLAGLTALT 235
>gi|290350826|dbj|BAI78334.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|130774819|gb|ABO32422.1| InlA [Listeria monocytogenes]
gi|167861894|gb|ACA05646.1| InlA [Listeria monocytogenes]
gi|167861946|gb|ACA05672.1| InlA [Listeria monocytogenes]
gi|167861948|gb|ACA05673.1| InlA [Listeria monocytogenes]
gi|194239402|emb|CAQ76841.1| internalin A [Listeria monocytogenes]
gi|298360052|gb|ADI77605.1| internalin A [Listeria monocytogenes]
gi|298360164|gb|ADI77661.1| internalin A [Listeria monocytogenes]
gi|298360372|gb|ADI77765.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|56797881|emb|CAH04902.1| internalin A [Listeria monocytogenes]
Length = 773
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 172/345 (49%), Gaps = 44/345 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 71 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 124
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 125 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 176
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
+ LT+L+ L IS +KV+D + L KLT NLE T + ++ LG +L L
Sbjct: 177 ANLTSLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILANLDEL 229
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+LN QL D G + LTNL L+L + I + L L+GL L L+L Q+ S +
Sbjct: 230 SLNGNQLKDIGT--LASLTNLTDLDLANDQISN--LAPLSGLTKLTELKLGANQI--SNI 283
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+GLT L ++ L+ + D + ++ L +L L L I+D ++ ++SLT L L
Sbjct: 284 SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 339
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 340 FFYNNKVSDVSS--LANLTNINWLS--------AGHNQISDLTPL 374
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + LE LN
Sbjct: 27 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLN--------------- 71
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL +D L +N
Sbjct: 72 ----NLTQINFSNNQLTD--ITPLKDLTKL--------------VDIL----------MN 101
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L + I D + L L NL LELS + S + L
Sbjct: 102 NNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISAL 155
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLTNL+ LSF G L+ LA L+SL+ L++ + +++D ++ L LT L L
Sbjct: 156 SGLTNLQQ--LSF-GNQVTDLKPLANLTSLERLDISSNKVSD--ISVLAKLTNLESLIAT 210
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
+I+D L NL L + G L D G + L++LT L+L+ N +++ L
Sbjct: 211 NNQISD--ITPLGILANLDELSLNGNQLKDIGT--LASLTNLTDLDLA-NDQISN--LAP 263
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 264 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 293
>gi|194326157|emb|CAQ77237.1| internalin A [Listeria monocytogenes]
gi|290350820|dbj|BAI78331.1| internalin A [Listeria monocytogenes]
gi|290350836|dbj|BAI78339.1| internalin A [Listeria monocytogenes]
gi|298360124|gb|ADI77641.1| internalin A [Listeria monocytogenes]
gi|298360394|gb|ADI77776.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|443428838|gb|AGC92218.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|148607488|gb|ABQ95520.1| InlA [Listeria monocytogenes]
Length = 797
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|148607482|gb|ABQ95519.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|371942136|gb|AEX60880.1| internaline [Listeria monocytogenes]
Length = 789
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|22347546|gb|AAM95918.1| internalin A precursor [Listeria monocytogenes]
gi|22347550|gb|AAM95920.1| internalin A precursor [Listeria monocytogenes]
Length = 744
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 42 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 95
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 96 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 147
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 148 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 192
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 193 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 235
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 236 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 291
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 292 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 338
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 339 ISDLTPLANL----TRITQLGLN 357
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 37 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 89
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 90 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 142
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 143 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 198
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 199 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 252
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 253 ----NISPLAGLTALT 264
>gi|16802477|ref|NP_463962.1| internalin A [Listeria monocytogenes EGD-e]
gi|386049359|ref|YP_005967350.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404282867|ref|YP_006683764.1| internalin A [Listeria monocytogenes SLCC2372]
gi|403399437|sp|P0DJM0.1|INLA_LISMO RecName: Full=Internalin-A; Flags: Precursor
gi|12054782|emb|CAC20628.1| internalin A [Listeria monocytogenes]
gi|16409810|emb|CAC98512.1| Internalin A [Listeria monocytogenes EGD-e]
gi|130774817|gb|ABO32421.1| InlA [Listeria monocytogenes]
gi|130774821|gb|ABO32423.1| InlA [Listeria monocytogenes]
gi|130774823|gb|ABO32424.1| InlA [Listeria monocytogenes]
gi|150371782|dbj|BAF65680.1| internalin A [Listeria monocytogenes]
gi|150371794|dbj|BAF65686.1| internalin A [Listeria monocytogenes]
gi|150371804|dbj|BAF65691.1| internalin A [Listeria monocytogenes]
gi|150371820|dbj|BAF65699.1| internalin A [Listeria monocytogenes]
gi|150371846|dbj|BAF65712.1| internalin A [Listeria monocytogenes]
gi|150371852|dbj|BAF65715.1| internalin A [Listeria monocytogenes]
gi|150371856|dbj|BAF65717.1| internalin A [Listeria monocytogenes]
gi|150371860|dbj|BAF65719.1| internalin A [Listeria monocytogenes]
gi|150371868|dbj|BAF65723.1| internalin A [Listeria monocytogenes]
gi|167861980|gb|ACA05689.1| InlA [Listeria monocytogenes]
gi|194239382|emb|CAQ76831.1| internalin A [Listeria monocytogenes]
gi|298359818|gb|ADI77488.1| internalin A [Listeria monocytogenes]
gi|298359832|gb|ADI77495.1| internalin A [Listeria monocytogenes]
gi|298360054|gb|ADI77606.1| internalin A [Listeria monocytogenes]
gi|298360128|gb|ADI77643.1| internalin A [Listeria monocytogenes]
gi|298360212|gb|ADI77685.1| internalin A [Listeria monocytogenes]
gi|298360216|gb|ADI77687.1| internalin A [Listeria monocytogenes]
gi|298360256|gb|ADI77707.1| internalin A [Listeria monocytogenes]
gi|298360522|gb|ADI77840.1| internalin A [Listeria monocytogenes]
gi|346423205|gb|AEO24730.1| internalin-A [Listeria monocytogenes FSL R2-561]
gi|404232369|emb|CBY53772.1| internalin A (LPXTG motif) [Listeria monocytogenes SLCC2372]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|167862032|gb|ACA05715.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTSLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|167861900|gb|ACA05649.1| InlA [Listeria monocytogenes]
gi|194326161|emb|CAQ77239.1| internalin A [Listeria monocytogenes]
gi|298360364|gb|ADI77761.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLTSLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|158429246|pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 167/353 (47%), Gaps = 46/353 (13%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
LE +++ + +S L L L Q+SD LTNL+ L+L+ + D
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 231
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L
Sbjct: 232 IG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTAL 285
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+L L+ Q+ D ++ +++L LT+L L+ I+D + + + L+ L ++D
Sbjct: 286 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD 341
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
V + +L+++ L+ N IS LT L +L +RIT GL
Sbjct: 342 --VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRITQLGLN 379
>gi|28210241|ref|NP_781185.1| internalin A-like protein/ S-layer protein [Clostridium tetani E88]
gi|28202677|gb|AAO35122.1| internalin A-like protein/putative S-layer protein [Clostridium
tetani E88]
Length = 695
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 173/374 (46%), Gaps = 68/374 (18%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
S L LK NL++L + + LE LRGL+NL +L N + LI
Sbjct: 372 SNLEPLKSMDNLENL---YLTKTKVVSLEPLRGLTNLKALVI---NETNVSDLTPIKNLI 425
Query: 132 NLVKLDLERCTRIHGGLVNLKG---LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
N LER T LV+L G L+ LESL+I N S++ + LTNLKSL I+
Sbjct: 426 N-----LERLTLGDNKLVSLAGIENLVNLESLDINKNNV---SNLASIRDLTNLKSLNIN 477
Query: 189 CSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ VTD S + LK L++++ LN G L +L+AL L +
Sbjct: 478 ENNVTDLSVVTNLKNLERIS-LNKNGV----TSLGALAALPELEW--------------- 517
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCN---LKCLELSDTQVGSSGLRHLSGLTNLES 304
+ GL + GL N LK L L Q+ S L L+ LT+LE+
Sbjct: 518 --------------VTAKENGLTSTVGLQNALKLKELFLDSNQI--SDLSSLANLTSLET 561
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
++L ISD S L+ L+ +K+L L I +A L S+ LT L + I+D
Sbjct: 562 LSLRTNNISDVS--SLSDLTRMKNLYLHKNNI--GSIAPLASMENLTRLYVGKNNISDIS 617
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
A + N KNL++L I +++ G + L SL L+++ N +TD + + GL L
Sbjct: 618 A--VANMKNLKTLSIGENMVSNIG--PVSGLQSLETLDVADNF-ITDASPAI--GLPNLK 670
Query: 425 SLNVSNSRITSAGL 438
+ + N+++ A +
Sbjct: 671 DIMLLNTKVPEAQI 684
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 201/438 (45%), Gaps = 90/438 (20%)
Query: 57 SSLLSVDLSGSDVTD----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
+L S+DLS +++ D SGL +LK+ + ++ +I+D ++ L GL NL L+
Sbjct: 103 ENLQSLDLSNNEIKDLGSLSGLKYLKELTLYKN-------KITD--VKALDGLKNLEKLN 153
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCT-------------RI----HGGLVNLKGLM 155
R N +G+K GL L +LDL + + RI G+ N + L
Sbjct: 154 LRDNKVKNIEGLK---GLEKLRELDLGKNSVFQPKPLKDLKNLRILNLESNGIGNAEDLE 210
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
+L+ + + T D++PL LTN+ L + + VT I LK + L LN+
Sbjct: 211 ELKQVEHLILSNNTVDDVEPLLTLTNVNKLYLDDNPVT--HIGKLKDMTNLKRLNINNDS 268
Query: 216 VTA-ACLDSLSALGSLFYLN----LNRCQLSD---------------------DGCEK-- 247
+ A L L L + N L+ +L+D D EK
Sbjct: 269 IEDLAELKKFKNLQWLKFKNQEMVLDNKKLNDLLVDPNKEVKFADKNLEFAIRDKIEKPK 328
Query: 248 -------FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGL 299
R+T L+ + D+ + NL G+ NL L L+ + S L L +
Sbjct: 329 GAIKKADLQRVTQLD--------LWDKNVTNLAGIENLIDLRVLNAGKNNISNLEPLKSM 380
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
NLE++ L+ T + SL L GL++LK+L ++ ++D L + +L L L L +
Sbjct: 381 DNLENLYLTKTKVV--SLEPLRGLTNLKALVINETNVSD--LTPIKNLINLERLTLGDNK 436
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+ A + N NL SL+I +++ I+DL++L LN+++N N+TD L +++
Sbjct: 437 LV--SLAGIENLVNLESLDINKNNVSNLA--SIRDLTNLKSLNINEN-NVTD--LSVVTN 489
Query: 420 LTGLVSLNVSNSRITSAG 437
L L ++++ + +TS G
Sbjct: 490 LKNLERISLNKNGVTSLG 507
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
LNL ++ I D ++ L L LDL I D G+ L K L+ L + +TD
Sbjct: 86 LNLKSKNIKD--ISGLEFFENLQSLDLSNNEIKDLGS--LSGLKYLKELTLYKNKITD-- 139
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
VK + L +L LNL N K +E + GL L L++ + + + LK LKNLR
Sbjct: 140 VKALDGLKNLEKLNLRDN---KVKNIEGLKGLEKLRELDLGKNSVFQP--KPLKDLKNLR 194
Query: 449 SLTLESCKV-TANDIKRLQ 466
L LES + A D++ L+
Sbjct: 195 ILNLESNGIGNAEDLEELK 213
>gi|158429244|pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 167/353 (47%), Gaps = 46/353 (13%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
LE +++ + +S L L L Q+SD LTNL+ L+L+ + D
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 231
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L
Sbjct: 232 IG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTAL 285
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+L L+ Q+ D ++ +++L LT+L L+ I+D + + + L+ L ++D
Sbjct: 286 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFSNNKVSD 341
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
V + +L+++ L+ N IS LT L +L +RIT GL
Sbjct: 342 --VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRITQLGLN 379
>gi|130774795|gb|ABO32412.1| InlA [Listeria monocytogenes]
gi|150371796|dbj|BAF65687.1| internalin A [Listeria monocytogenes]
gi|150371806|dbj|BAF65692.1| internalin A [Listeria monocytogenes]
gi|150371822|dbj|BAF65700.1| internalin A [Listeria monocytogenes]
gi|194326149|emb|CAQ77233.1| internalin A [Listeria monocytogenes]
gi|298359930|gb|ADI77544.1| internalin A [Listeria monocytogenes]
gi|298360322|gb|ADI77740.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|130774809|gb|ABO32417.1| InlA [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 72/335 (21%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
A+ MK G N+ + DL++ T + + +K + +E LN
Sbjct: 54 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--------------- 98
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
NL + S +++TD I LK L KL + + + A + L+ L +L L L
Sbjct: 99 ----NLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLF 150
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q++D + LTNL L L S I D + L+GL +L+ L + QV + L+ L
Sbjct: 151 NNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-QV--TDLKPL 203
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
+ LT LE +++S +SD S+ LA L++L+SL QI+D +T L LT+LD
Sbjct: 204 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISD-----ITPLGILTNLD-- 254
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
L + G L D G + L++LT L+L+ N L
Sbjct: 255 -------------------ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAP 290
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 291 LSGLTKLTELKLGANQIS-----NISPLAGLTALT 320
>gi|386052707|ref|YP_005970265.1| internalin A [Listeria monocytogenes Finland 1998]
gi|130774801|gb|ABO32414.1| InlA [Listeria monocytogenes]
gi|130774805|gb|ABO32415.1| InlA [Listeria monocytogenes]
gi|130774807|gb|ABO32416.1| InlA [Listeria monocytogenes]
gi|150371724|dbj|BAF65677.1| internalin A [Listeria monocytogenes]
gi|150371780|dbj|BAF65679.1| internalin A [Listeria monocytogenes]
gi|150371784|dbj|BAF65681.1| internalin A [Listeria monocytogenes]
gi|150371788|dbj|BAF65683.1| internalin A [Listeria monocytogenes]
gi|150371790|dbj|BAF65684.1| internalin A [Listeria monocytogenes]
gi|150371792|dbj|BAF65685.1| internalin A [Listeria monocytogenes]
gi|150371798|dbj|BAF65688.1| internalin A [Listeria monocytogenes]
gi|150371802|dbj|BAF65690.1| internalin A [Listeria monocytogenes]
gi|150371808|dbj|BAF65693.1| internalin A [Listeria monocytogenes]
gi|150371814|dbj|BAF65696.1| internalin A [Listeria monocytogenes]
gi|150371818|dbj|BAF65698.1| internalin A [Listeria monocytogenes]
gi|150371824|dbj|BAF65701.1| internalin A [Listeria monocytogenes]
gi|150371830|dbj|BAF65704.1| internalin A [Listeria monocytogenes]
gi|150371832|dbj|BAF65705.1| internalin A [Listeria monocytogenes]
gi|150371834|dbj|BAF65706.1| internalin A [Listeria monocytogenes]
gi|150371836|dbj|BAF65707.1| internalin A [Listeria monocytogenes]
gi|150371838|dbj|BAF65708.1| internalin A [Listeria monocytogenes]
gi|150371844|dbj|BAF65711.1| internalin A [Listeria monocytogenes]
gi|150371848|dbj|BAF65713.1| internalin A [Listeria monocytogenes]
gi|150371850|dbj|BAF65714.1| internalin A [Listeria monocytogenes]
gi|150371854|dbj|BAF65716.1| internalin A [Listeria monocytogenes]
gi|150371864|dbj|BAF65721.1| internalin A [Listeria monocytogenes]
gi|150371870|dbj|BAF65724.1| internalin A [Listeria monocytogenes]
gi|290350828|dbj|BAI78335.1| internalin A [Listeria monocytogenes]
gi|290350832|dbj|BAI78337.1| internalin A [Listeria monocytogenes]
gi|290350834|dbj|BAI78338.1| internalin A [Listeria monocytogenes]
gi|290350840|dbj|BAI78341.1| internalin A [Listeria monocytogenes]
gi|298359802|gb|ADI77480.1| internalin A [Listeria monocytogenes]
gi|298359828|gb|ADI77493.1| internalin A [Listeria monocytogenes]
gi|298359876|gb|ADI77517.1| internalin A [Listeria monocytogenes]
gi|298359878|gb|ADI77518.1| internalin A [Listeria monocytogenes]
gi|298359918|gb|ADI77538.1| internalin A [Listeria monocytogenes]
gi|298359964|gb|ADI77561.1| internalin A [Listeria monocytogenes]
gi|298359966|gb|ADI77562.1| internalin A [Listeria monocytogenes]
gi|298360014|gb|ADI77586.1| internalin A [Listeria monocytogenes]
gi|298360038|gb|ADI77598.1| internalin A [Listeria monocytogenes]
gi|298360084|gb|ADI77621.1| internalin A [Listeria monocytogenes]
gi|298360104|gb|ADI77631.1| internalin A [Listeria monocytogenes]
gi|298360134|gb|ADI77646.1| internalin A [Listeria monocytogenes]
gi|298360170|gb|ADI77664.1| internalin A [Listeria monocytogenes]
gi|298360178|gb|ADI77668.1| internalin A [Listeria monocytogenes]
gi|298360214|gb|ADI77686.1| internalin A [Listeria monocytogenes]
gi|298360242|gb|ADI77700.1| internalin A [Listeria monocytogenes]
gi|298360244|gb|ADI77701.1| internalin A [Listeria monocytogenes]
gi|298360254|gb|ADI77706.1| internalin A [Listeria monocytogenes]
gi|298360278|gb|ADI77718.1| internalin A [Listeria monocytogenes]
gi|298360310|gb|ADI77734.1| internalin A [Listeria monocytogenes]
gi|298360334|gb|ADI77746.1| internalin A [Listeria monocytogenes]
gi|298360338|gb|ADI77748.1| internalin A [Listeria monocytogenes]
gi|298360376|gb|ADI77767.1| internalin A [Listeria monocytogenes]
gi|298360384|gb|ADI77771.1| internalin A [Listeria monocytogenes]
gi|298360436|gb|ADI77797.1| internalin A [Listeria monocytogenes]
gi|298360532|gb|ADI77845.1| internalin A [Listeria monocytogenes]
gi|298360542|gb|ADI77850.1| internalin A [Listeria monocytogenes]
gi|298360552|gb|ADI77855.1| internalin A [Listeria monocytogenes]
gi|298360564|gb|ADI77861.1| internalin A [Listeria monocytogenes]
gi|298360568|gb|ADI77863.1| internalin A [Listeria monocytogenes]
gi|298360596|gb|ADI77877.1| internalin A [Listeria monocytogenes]
gi|298360666|gb|ADI77912.1| internalin A [Listeria monocytogenes]
gi|298360710|gb|ADI77934.1| internalin A [Listeria monocytogenes]
gi|346645358|gb|AEO37983.1| internalin A [Listeria monocytogenes Finland 1998]
gi|443428778|gb|AGC92188.1| internalin A [Listeria monocytogenes]
gi|443428804|gb|AGC92201.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+D L +N Q++D + LTNL L L + I D
Sbjct: 123 --------------VDIL----------MNNNQIAD--ITPLANLTNLTGLTLFNNQITD 156
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
L L L NL LELS + S + LSGLT+L+ LSF G L+ LA L++L
Sbjct: 157 --LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVTDLKPLANLTTL 209
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+ L++ + +++D ++ L LT L L +I+D L NL L + G L D
Sbjct: 210 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|112961787|gb|ABI28544.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|443428862|gb|AGC92230.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 186/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL+ L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLISLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LGSLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + +E LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGVEYLN-------------------NLTQINFSNNQLTD--ITPLKNLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--LDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL +L+ L + QV + L+ L+ LT LE +++S +SD S+ LA L++L
Sbjct: 179 --ISALSGLISLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LGSLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 50/177 (28%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ + G L NL IN S ++D + L L+ L + ++ QI D T LA LT+L
Sbjct: 87 GIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ ++D
Sbjct: 145 TGLT---LFNNQITDLDP--LKNLTNLNRLELSSNTISD--------------------- 178
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 462
IS L+GL+SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLISL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|290972196|ref|XP_002668843.1| predicted protein [Naegleria gruberi]
gi|284082373|gb|EFC36099.1| predicted protein [Naegleria gruberi]
Length = 348
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 143/299 (47%), Gaps = 25/299 (8%)
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
+I + ++ L+ L++LNI N I + + + L NL +L I + + D G+ +
Sbjct: 4 NKIGNDVQDISKLVNLKTLNIS-INNIGNEGLIIVCNLINLTNLNIENNDIGDEGVQDIS 62
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC----------------QLSDDGC 245
L LT LN++ + + +S L +L LN+ Q+ +DG
Sbjct: 63 KLVNLTNLNIKSNALRSKGAQEISKLTNLTSLNVAENNVMLSEKNLSRNNITHQIENDGI 122
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ L NL +LN+ + IGDEG+ +++ L NL L++ + ++ G++ + L NL ++
Sbjct: 123 KSIFNLINLTNLNIQNNDIGDEGVQDISKLINLTNLDIGNNKIRDEGIKSIFNLINLTNL 182
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI-TDSG 364
N+ I D ++ ++ L +L +L++ +I D G + L LT L + I T++
Sbjct: 183 NIQNNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTKLVCWNTDIATNNQ 242
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVK--HIKDLSSLTLLNL-SQNCNLTDKTLELISGL 420
L+N KN + GL + K IK + + N +QN NL ++ EL S L
Sbjct: 243 INILKNEKNQK----LKSGLKEKYNKLLEIKQANEKAIQNYKNQNDNLKNENEELKSQL 297
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148
N QI + G++ + L NLT+L+ + NN I +G++ + LINL LD+ G+
Sbjct: 112 NITHQIENDGIKSIFNLINLTNLNIQ-NNDIGDEGVQDISKLINLTNLDIGNNKIRDEGI 170
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
++ L+ L +LNI+ N I D ++ +S L NL +L I +K+ D+G + L LT
Sbjct: 171 KSIFNLINLTNLNIQ-NNDIGDEGVQDISKLINLTNLDICQTKIGDNGAKEICKLINLTK 229
Query: 209 L 209
L
Sbjct: 230 L 230
>gi|371942086|gb|AEX60855.1| truncated internaline [Listeria monocytogenes]
gi|371942128|gb|AEX60876.1| truncated internaline [Listeria monocytogenes]
Length = 491
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQL--SFGNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSDGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|300867094|ref|ZP_07111761.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
gi|300334925|emb|CBN56927.1| Leucine Rich Repeat domain protein (fragment) [Oscillatoria sp. PCC
6506]
Length = 334
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 129/258 (50%), Gaps = 22/258 (8%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
+ LS+LT+L + NN I+ +K L NL LDL + ++K L L LN+
Sbjct: 81 QTLSSLTAL-YLYNNQIS--DLKPLQSLTNLTWLDLN-----DNQISDIKPLQSLTKLNV 132
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ SD+KPL LTNL SL + +K++D I L+ L L LL L ++ +
Sbjct: 133 LILHSNKISDIKPLESLTNLTSLSLYSNKISD--IKPLESLTNLDLLELHNNKISD--IK 188
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L +L L L L+ Q+ D + LTNL SL+L S I D L L L NL L+
Sbjct: 189 PLQSLTKLNLLQLHNNQIGD--IKPLQSLTNLTSLSLYSNKISDITL--LQSLTNLTILD 244
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
LS+ ++ S ++ L LT L ++LS ISD + L L+ L L L QI+D +
Sbjct: 245 LSNNKI--SDIKPLEFLTKLNILDLSNNKISD--IEPLQSLTKLTILYLYNNQISD--IK 298
Query: 343 ALTSLTGLTHLDLFGARI 360
L SLT L L L G I
Sbjct: 299 TLKSLTKLMLLYLGGNSI 316
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 25/231 (10%)
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
+R LS + L LE C ++ L +LT L L + Q+ S L+
Sbjct: 52 DRTSLSPEAKHTVEVL--LEKAETTECEAANQTLSSLTALY------LYNNQI--SDLKP 101
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L LTNL ++L+ ISD ++ L L+ L L L + +I+D + L SLT LT L L
Sbjct: 102 LQSLTNLTWLDLNDNQISD--IKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSL 157
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
+ +I+D L + NL LE+ ++D IK L SLT LNL Q N ++
Sbjct: 158 YSNKISDIKP--LESLTNLDLLELHNNKISD-----IKPLQSLTKLNLLQLHNNQIGDIK 210
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
+ LT L SL++ +++I+ L L+ L NL L L + K++ DIK L+
Sbjct: 211 PLQSLTNLTSLSLYSNKISDITL--LQSLTNLTILDLSNNKIS--DIKPLE 257
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 23/252 (9%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
T C + L SL L L Q+SD + LTNL L+L+ I D + L L
Sbjct: 73 TTECEAANQTLSSLTALYLYNNQISD--LKPLQSLTNLTWLDLNDNQISD--IKPLQSLT 128
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L L L ++ S ++ L LTNL S++L ISD ++ L L++L L L +I
Sbjct: 129 KLNVLILHSNKI--SDIKPLESLTNLTSLSLYSNKISD--IKPLESLTNLDLLELHNNKI 184
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
+D + L SLT L L L +I D L++ NL SL + ++D + ++ L+
Sbjct: 185 SD--IKPLQSLTKLNLLQLHNNQIGDIKP--LQSLTNLTSLSLYSNKISDITL--LQSLT 238
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT-LESC 455
+LT+L+LS N K LE LT L L++SN++I+ ++PL++L LT L
Sbjct: 239 NLTILDLSNNKISDIKPLEF---LTKLNILDLSNNKISD-----IEPLQSLTKLTILYLY 290
Query: 456 KVTANDIKRLQS 467
+DIK L+S
Sbjct: 291 NNQISDIKTLKS 302
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 25/219 (11%)
Query: 63 DLSGSDVTDSGLIHLKDCSNLQSL-DFNFCI----QISDGGLEHLRGLSNLTSLSFRRNN 117
+L+ D+ D+ + D LQSL N I +ISD ++ L L+NLTSLS N
Sbjct: 107 NLTWLDLNDN---QISDIKPLQSLTKLNVLILHSNKISD--IKPLESLTNLTSLSLYSNK 161
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
+K L NL L+L + + ++K L L LN+ + D+KPL
Sbjct: 162 ---ISDIKPLESLTNLDLLELH-----NNKISDIKPLQSLTKLNLLQLHNNQIGDIKPLQ 213
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL SL + +K++D I L+ L LT+L+L ++ + L L L L+L+
Sbjct: 214 SLTNLTSLSLYSNKISD--ITLLQSLTNLTILDLSNNKISD--IKPLEFLTKLNILDLSN 269
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGL 275
++SD E LT L L L + I D + L +LT L
Sbjct: 270 NKISD--IEPLQSLTKLTILYLYNNQISDIKTLKSLTKL 306
>gi|112961784|gb|ABI28542.1| internalin A [Listeria monocytogenes]
gi|112961796|gb|ABI28550.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|112961778|gb|ABI28538.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|407424780|gb|EKF39143.1| hypothetical protein MOQ_000636 [Trypanosoma cruzi marinkellei]
Length = 936
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 188/443 (42%), Gaps = 59/443 (13%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------------- 91
+W+ + + L +DL S VTD L L+ C L LD +C
Sbjct: 415 QWLRAL----TQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRITSLKCLVGALCD 470
Query: 92 ---------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++D GL L+ + L +S A++ + L L ++D+ R
Sbjct: 471 SLRELNLTETSVTDEGLVPLKDFAALEWISLEGCGAVS--DVNVLCNLTRLREVDVGRTR 528
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+GG+++L L ++ ++ C +TD+ L L L+ + +S VT+ GIA L G
Sbjct: 529 VTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCG 586
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+ L L L+ C + ++ L L L L+L+ + + G ++ L +L + S
Sbjct: 587 ARSLRKLQLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSV 645
Query: 263 GIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESI---------NLSFTGI 312
+ N L LK L+LS T+V S L L LE++ +L F I
Sbjct: 646 LVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLII 705
Query: 313 SDGSLRKLAGLSSLKSLNLDA--------RQITDTGLAALTSLTGLTHLDLFGARITDSG 364
S + G++ + D + D G + + ++T + I +
Sbjct: 706 QTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMT------INDGAIKSTA 759
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
AA + LR L + G+T+ G++ ++ L L L+ N+T+ + ++ L+ L
Sbjct: 760 AAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCKNVTE--VAVLRWLSQLK 817
Query: 425 SLNVSNSRITSAGLRHLKPLKNL 447
L++S + +T +GL +L P NL
Sbjct: 818 ELDLSATGVTGSGLANLSPSGNL 840
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 195/457 (42%), Gaps = 58/457 (12%)
Query: 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNF 90
CAL+DL L Y V ++ M S+ L + L G + GL L+ + L+ LD +
Sbjct: 373 CALRDLDLS-YTQVTEEGMHRDVSRLKKLSRLSLEGCRKIE-GLQWLRALTQLRELDLGY 430
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI--NLVKLDLERCTRIHGGL 148
++D L LR L L + IT+ +K G + +L +L+L + GL
Sbjct: 431 S-SVTDDSLTALRFCPELVRLDLQWCGRITS--LKCLVGALCDSLRELNLTETSVTDEGL 487
Query: 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
V LK LE ++++ C ++D ++ L LT L+ + + ++VT+ G+ L Q L
Sbjct: 488 VPLKDFAALEWISLEGCGAVSDVNV--LCNLTRLREVDVGRTRVTNGGVLSLSQCQALRA 545
Query: 209 LNLEGC-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGD 266
+ + C +T A L AL L ++L+ C ++++G +L L L SC + D
Sbjct: 546 MRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAALCGARSLRKLQLQSCHAVSD 603
Query: 267 EGLVN-LTGLCNLKCLELSDTQV---GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
VN L GL +L L+L T V GS GL LT L I S S
Sbjct: 604 ---VNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTL--IMHSVLVHSLQHWNAALF 658
Query: 323 LSSLKSLNLDARQITDTGLAALT--------SLTG---LTHLDLFGARITDSGAAYLRNF 371
L LK L+L ++T L+ L SL G +THLD + T SG
Sbjct: 659 LPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRGCKNITHLDFLIIQ-TSSGVG----- 712
Query: 372 KNLRSLEICGGGLTDA-----------GVKHIKDLSSLTLLNLSQNCNLTDKTLEL-ISG 419
+CG DA G + D + N++ N T + G
Sbjct: 713 -------VCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPVVG 765
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L L +S++ +T+ GLR L+ L L L CK
Sbjct: 766 RHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCK 802
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 122/503 (24%), Positives = 205/503 (40%), Gaps = 68/503 (13%)
Query: 8 QQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
QQ+ + + TEV + A R+ L LG P K V LS+ +S S
Sbjct: 310 QQVSDVTPFLPHCTEVRVLALRNTHLTSEKLGLLP---QKCRHV------EQLSLCMSSS 360
Query: 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITAQGMKA 126
L H C+ L+ LD ++ Q+++ G+ + L L+ LS I +G++
Sbjct: 361 VSCTRFLRHRSLCA-LRDLDLSY-TQVTEEGMHRDVSRLKKLSRLSLEGCRKI--EGLQW 416
Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKS 184
L L +LDL + L L+ +L L+++WC IT +K L G +L+
Sbjct: 417 LRALTQLRELDLGYSSVTDDSLTALRFCPELVRLDLQWCGRIT--SLKCLVGALCDSLRE 474
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGC-----------------------PVTAACL 221
L ++ + VTD G+ LK L ++LEGC VT +
Sbjct: 475 LNLTETSVTDEGLVPLKDFAALEWISLEGCGAVSDVNVLCNLTRLREVDVGRTRVTNGGV 534
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
SLS +L + + +C D L LE ++L C + +EG+ L G +L+ L
Sbjct: 535 LSLSQCQALRAMRMRQCYRLTDA-SFLGALQQLEEVDLSDCPVTNEGIAALCGARSLRKL 593
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TG 340
+L S + L GL +L ++L T + + LA L +L + + +
Sbjct: 594 QLQSCH-AVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQCPQLTTLIMHSVLVHSLQH 652
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
A L L LDL ++T ++LR L +L + G K+I L L +
Sbjct: 653 WNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSL-------RGCKNITHLDFLII 705
Query: 401 LNLS---------QNCNLTDKTLELIS--------GLTGLVSLNVSNSRITSAGLRHLKP 443
S + D +++I+ G + + ++ +++ I S +
Sbjct: 706 QTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIENMTINDGAIKSTAAAPVVG 765
Query: 444 LKNLRSLTLESCKVTANDIKRLQ 466
LR LTL VT + ++ LQ
Sbjct: 766 RHRLRELTLSDTGVTNDGLRALQ 788
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 140/358 (39%), Gaps = 74/358 (20%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
+ L VD+ + VT+ G++ L C L+++ C +++D L L L + +
Sbjct: 517 TRLREVDVGRTRVTNGGVLSLSQCQALRAMRMRQCYRLTDASF--LGALQQLEEVDLS-D 573
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIH-----GGLVNLK---------------GLMK 156
+T +G+ A G +L KL L+ C + GGL +L GL +
Sbjct: 574 CPVTNEGIAALCGARSLRKLQLQSCHAVSDVNFLGGLEHLMLLDLHHTTVDEAGSVGLAQ 633
Query: 157 LESLNIKWCNCITDSDMKPLSG---LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L + + ++ + L LK L +S +KVT +++L+ L L+L G
Sbjct: 634 CPQLTTLIMHSVLVHSLQHWNAALFLPRLKRLDLSTTKVTSDALSFLRMCPILETLSLRG 693
Query: 214 CPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRLTNL---------------E 255
C +++ L L + C ++ E L ++ E
Sbjct: 694 C-------KNITHLDFLIIQTSSGVGVCGIAPHDAEPHDTLVDIIAGKEKNPDDGPSPIE 746
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS------------------ 297
++ ++ I + G L+ L LSDT V + GLR L
Sbjct: 747 NMTINDGAIKSTAAAPVVGRHRLRELTLSDTGVTNDGLRALQYCPGLERLRLAHCKNVTE 806
Query: 298 -----GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L+ L+ ++LS TG++ L L+ +L + R+ + G + ++TG+
Sbjct: 807 VAVLRWLSQLKELDLSATGVTGSGLANLSPSGNLPVRCMREREWKEEGGVSGDNMTGV 864
>gi|158429242|pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 167/353 (47%), Gaps = 46/353 (13%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L L + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD LK L LT
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-----LKPLANLT-- 173
Query: 210 NLEGCPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
LE +++ + +S L L L Q+SD LTNL+ L+L+ + D
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 231
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L
Sbjct: 232 IG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTAL 285
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+L L+ Q+ D ++ +++L LT+L L+ I+D + + + L+ L ++D
Sbjct: 286 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD 341
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
V + +L+++ L+ N IS LT L +L +RIT GL
Sbjct: 342 --VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----TRITQLGLN 379
>gi|112961781|gb|ABI28540.1| internalin A [Listeria monocytogenes]
Length = 696
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 67/376 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
S + +TD + LKD + L + N QI+D + L L+NLT L+ NN IT
Sbjct: 1 FSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-NNQIT--D 52
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L NL +L+L T + L GL L+ L+ N +TD +KPL+ LT L+
Sbjct: 53 IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPLANLTTLE 106
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 107 RLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG--------------- 144
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L
Sbjct: 145 ------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPLSGLTKLT 194
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D
Sbjct: 195 ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD- 249
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
+ + + L+ L ++D V + +L+++ L+ N IS LT L
Sbjct: 250 -ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPL 297
Query: 424 VSLNVSNSRITSAGLR 439
+L +RIT GL
Sbjct: 298 ANL----TRITQLGLN 309
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 23/217 (10%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+N Q++D + LTNL L L + I D + L L NL LELS + S +
Sbjct: 23 MNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDIS 76
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGLTNL+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 77 ALSGLTNLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 131
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
+I+D L NL L + G L D G + L++LT L+L+ N L
Sbjct: 132 ATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNL 184
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+SGLT L L + ++I+ ++ PL L +LT
Sbjct: 185 APLSGLTKLTELKLGANQIS-----NISPLAGLTALT 216
>gi|431892162|gb|ELK02609.1| F-box/LRR-repeat protein 14 [Pteropus alecto]
Length = 412
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 166/373 (44%), Gaps = 88/373 (23%)
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG---GLVNLKGLMKLES 159
RG+ + LS RR+ + QGM N+ L+L C + G ++ + L +
Sbjct: 68 RGIRRVQILSLRRSLSYVIQGMA------NIESLNLSGCYNLTDNGLGHAFVQEISSLRA 121
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LN+ C ITDS + ++ LK L++ CS +T++G+ + GLQ+L LNL C
Sbjct: 122 LNLSLCKQITDSSLGRIA--QYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
LSD G + +T + EG + L
Sbjct: 180 R-----------------------HLSDVGIGHLAGMTRSAA----------EGCLGLEQ 206
Query: 275 LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLD 332
L C +L+D L+H+S GLT L +NLSF G ISD L L+ + SL+SLNL
Sbjct: 207 LTLQDCQKLTDLS-----LKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLR 261
Query: 333 A-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-K 390
+ I+DTG+ L + SL + G ++D G+ +
Sbjct: 262 SCDNISDTGIMHLA----------------------------MGSLRLSGLDVSDDGINR 293
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLR 448
++ + L LN+ Q +TDK LELI+ L+ L +++ +RIT GL + L L+
Sbjct: 294 MVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLK 353
Query: 449 SLTLESCKVTAND 461
L L ++T ++
Sbjct: 354 VLNLGLWQMTDSE 366
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 145/297 (48%), Gaps = 43/297 (14%)
Query: 61 SVDLSG-SDVTDSGLIH--LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S++LSG ++TD+GL H +++ S+L++L+ + C QI+D L + + L L L
Sbjct: 94 SLNLSGCYNLTDNGLGHAFVQEISSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELGGC 153
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCN 166
+ IT G+ A GL L L+L C + G+ +L G+ + LE L ++ C
Sbjct: 154 SNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQ 213
Query: 167 CITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
+TD +K +S GLT L+ L +S C ++D+G+ +L + L LNL C +
Sbjct: 214 KLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMH 273
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLE 282
A+GS L L+ +SDDG + R + L +LN+ C I D+GL +
Sbjct: 274 LAMGS---LRLSGLDVSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA--------- 321
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
HLS LT ++ T I+ L ++ L LK LNL Q+TD+
Sbjct: 322 -----------EHLSQLTGIDLYGC--TRITKRGLERITQLPCLKVLNLGLWQMTDS 365
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFR 114
G LL++ G ++D+GL+HL +L+SL+ C ISD G+ HL G L+ L
Sbjct: 229 GLRLLNLSFCGG-ISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLD-- 285
Query: 115 RNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCITDS 171
++ G+ + + L L++ +C RI + L + L +L +++ C IT
Sbjct: 286 ----VSDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKR 341
Query: 172 DMKPLSGLTNLKSLQISCSKVTDS 195
++ ++ L LK L + ++TDS
Sbjct: 342 GLERITQLPCLKVLNLGLWQMTDS 365
>gi|223698886|gb|ACN19164.1| internalin A [Listeria monocytogenes]
Length = 715
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 184/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI D + L L+NLT L+ N
Sbjct: 13 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIGD--ITPLANLTNLTGLTLF-N 66
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 67 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 118
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 119 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 163
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 164 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 206
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 207 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 262
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 263 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 309
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 310 ISDLTPLANL----TRITQLGLN 328
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 119/252 (47%), Gaps = 41/252 (16%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D + L +L +N + QL+D LT L + +++ IGD + L L NL
Sbjct: 5 SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIGD--ITPLANLTNLT 60
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + L L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 61 GLTLFNNQI--TDLDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 114
Query: 340 GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFK-------------------NLRSLEI 379
L L +LT L LD+ +++D S A L N + NL L +
Sbjct: 115 -LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 173
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 174 NGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS----- 223
Query: 440 HLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 224 NISPLAGLTALT 235
>gi|261334051|emb|CBH17045.1| T. brucei spp.-specific protein [Trypanosoma brucei gambiense
DAL972]
Length = 1399
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 178/403 (44%), Gaps = 18/403 (4%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRN 116
+L + L G + D+G+ L + L+ LD + SD LRGL + T +S +
Sbjct: 489 TLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDS----LRGLCVSQTIVSLNLS 544
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + L L +L+L C RI+ G L+ L +L + I ITD D+
Sbjct: 545 HCWKVTSVFHISALETLNELNLSDCIRINAGWEALEKLQQLH-VAILSNTHITDRDISHF 603
Query: 177 SGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
S L +L +S C ++ D I L + L LNL+ C L L L L LN+
Sbjct: 604 SKCKELVTLDLSFCDELFD--ITSLSNITTLEDLNLDNCSKIRKGLSVLGELPRLRVLNV 661
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
L++ + L LD+C G+ D + L+ L LK L L +SG+
Sbjct: 662 KGVHLTNSVIGSLGNGKSFVKLILDNCKGLSD--VTFLSSLSTLKELNLHHCDAVTSGIG 719
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTGLAALTSLTGLTH 352
L L L ++L +T I + SL + SS L SLNL ++IT ++A+ SL L
Sbjct: 720 TLGRLLQLRVLDLGWTKIDNNSLEDICACSSPLVSLNLSHCKEIT--SISAIASLNALEK 777
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
L++ SG LR + + D ++HI + SL LNL+ ++TD
Sbjct: 778 LNIDNCCHVTSGWNVFGTLHQLRVAVLSNTRINDENIRHISECKSLNTLNLAFCNDITDI 837
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
T +S +T L LN+ G+ L L LR L + C
Sbjct: 838 T--ALSNITMLRELNIDWCFNIEKGVEALGKLPKLRELDAKKC 878
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 190/407 (46%), Gaps = 19/407 (4%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ ++L +DL+ +++ DS + + C+ L L + C I D + L+ L L+
Sbjct: 225 SRLTNLKCLDLNSTNIDDSCIGEISACAKLSKLSVSECNNIIDA--TPISQLAALEELNL 282
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT +G+ L+ L LDL + L +L LE LN+ +C I +++
Sbjct: 283 NSNCHIT-KGIGTLGMLLRLRMLDLSGVSVEDNFLKDLCDCGPLERLNLSYC--IQLTNI 339
Query: 174 KPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
PLS T ++ L ++ C ++T GI + L KL +L+++G ++ LDS+ GSL
Sbjct: 340 NPLSNATAIEELNLNGCRRIT-RGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVK 398
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
++L+ C D S + LE LN+ C G+ L L L+ L + + + S
Sbjct: 399 VSLDNCAGFGD-MTLLSSIVTLEELNIQKCADIISGVCCLGTLPYLRVLNIKEAHISSLD 457
Query: 293 LRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
+ +L + L S TG+S+ + LA + +L+ L+L D G+ L +L L
Sbjct: 458 FTGIGASKSLLQLTLESITGLSN--VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLK 515
Query: 352 HLDLFGARITDSGAAYLRNF---KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LDL G T++ + LR + + SL + V HI L +L LNLS +C
Sbjct: 516 VLDLSG---TNTDSDSLRGLCVSQTIVSLNL-SHCWKVTSVFHISALETLNELNLS-DCI 570
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
+ E + L L +SN+ IT + H K L +L L C
Sbjct: 571 RINAGWEALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFC 617
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 114/417 (27%), Positives = 171/417 (41%), Gaps = 59/417 (14%)
Query: 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
SG V D+ L L DC L+ L+ ++CIQ+++ + LSN T++
Sbjct: 307 SGVSVEDNFLKDLCDCGPLERLNLSYCIQLTN-----INPLSNATAIE------------ 349
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC------------------- 165
+L+L C RI G+ + L KL L++K
Sbjct: 350 ----------ELNLNGCRRITRGIGVVWALPKLRVLHMKGVHLSEPSLDSVGTGGSLVKV 399
Query: 166 ---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
NC DM LS + L+ L I SG+ L L L +LN++ +++
Sbjct: 400 SLDNCAGFGDMTLLSSIVTLEELNIQKCADIISGVCCLGTLPYLRVLNIKEAHISSLDFT 459
Query: 223 SLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ A SL L L LS+ E + + LE L+L C D G+ L L LK L
Sbjct: 460 GIGASKSLLQLTLESITGLSN--VEALANILTLEKLSLLGCNGIDAGIGCLGNLPQLKVL 517
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
+LS T S LR L + S+NLS S+ ++ L +L LNL + G
Sbjct: 518 DLSGTNTDSDSLRGLCVSQTIVSLNLSHCW-KVTSVFHISALETLNELNLSDCIRINAGW 576
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLT 399
AL L L L ITD ++ K L +L++ C + +I L L
Sbjct: 577 EALEKLQQLHVAILSNTHITDRDISHFSKCKELVTLDLSFCDELFDITSLSNITTLEDLN 636
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L NC+ K L ++ L L LNV +T++ + L K+ L L++CK
Sbjct: 637 L----DNCSKIRKGLSVLGELPRLRVLNVKGVHLTNSVIGSLGNGKSFVKLILDNCK 689
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 126/487 (25%), Positives = 199/487 (40%), Gaps = 99/487 (20%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI---- 119
LS + + D + H+ +C +L +L+ FC I+D + LSN+T L R N
Sbjct: 804 LSNTRINDENIRHISECKSLNTLNLAFCNDITD-----ITALSNITML--RELNIDWCFN 856
Query: 120 TAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMKLESLNIKWCNCI----- 168
+G++A L L +LD ++C + + K L+KL N + C+
Sbjct: 857 IEKGVEALGKLPKLRELDAKKCGTSVRWMQQYPYNTLFKSLVKLNLENGRESFCVGTLSS 916
Query: 169 -------------TDSDMKPLSGLTNLKSLQISCSKVTD---SGIAYLKGLQKLTLLNLE 212
+ P+S L L+ L + +V D GI+ K LQ L N+
Sbjct: 917 TAIVEELLLGRACEPYHLPPISSLRRLRVLNLDDGRVCDIWLEGISQSKSLQSL---NVS 973
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
C + +LS+L +L LN+N C G E F LT L L + +EG+ L
Sbjct: 974 NCNYITD-ISALSSLSTLEELNVNCCDRIRKGWEAFEALTRLRVATLSVTWVTNEGIRLL 1032
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
+G NL+ LEL + S + ++ + +LE + + + L K+ L L+ L L
Sbjct: 1033 SGCKNLRNLELYCCR-DVSNIEPINNIKSLEELTIQNCHNINEGLLKVGMLPRLRVLVLR 1091
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG--LTDAG- 388
Q T L++L L L + G + D + N L+ L+I G L D G
Sbjct: 1092 KLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLKELKIAHGDRLLNDVGD 1149
Query: 389 --------------------------------------------VKHIKDLSSLTLLNLS 404
+ HI +L++L LNLS
Sbjct: 1150 LGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPDIYHISNLTALEELNLS 1209
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRI-TSAGLRHLKPLKNLRSLTLESCKVT----A 459
C E ++ L L LN+S++R+ TS G ++ K+L +L LESC +T
Sbjct: 1210 -GCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKSLITLNLESCDMTDASCL 1268
Query: 460 NDIKRLQ 466
DIK L+
Sbjct: 1269 ADIKTLE 1275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 186/405 (45%), Gaps = 42/405 (10%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
++ D LE + +L SL+ N IT + A + L L +L++ C RI G +
Sbjct: 952 RVCDIWLEGISQSKSLQSLNVSNCNYIT--DISALSSLSTLEELNVNCCDRIRKGWEAFE 1009
Query: 153 GLMKLE--SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L +L++ W +T+ ++ LSG NL++L++ C + S I + ++ L L
Sbjct: 1010 ALTRLRVATLSVTW---VTNEGIRLLSGCKNLRNLELYCCRDV-SNIEPINNIKSLEELT 1065
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQ-----------------LSDDGCEK---FSR 250
++ C L + L L L L + Q L+ +G E+
Sbjct: 1066 IQNCHNINEGLLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCDIKL 1125
Query: 251 LTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
++N+ +L GD L+N G L L L LS +G++ + + +L+S++
Sbjct: 1126 ISNIATLKELKIAHGDR-LLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLD 1184
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GA 365
++ + + ++ L++L+ LNL +G ALT+L L L+L R+T S G
Sbjct: 1185 ITHS-FELPDIYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGG 1243
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
Y+ K+L +L + +TDA + D+ +L L++ + C + + L L
Sbjct: 1244 YYISRCKSLITLNLESCDMTDASC--LADIKTLEELHIGK-CEELTRGFSALFTLPQLRI 1300
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI---KRLQS 467
LN+ +S IT LR ++ + L L CK NDI +R++S
Sbjct: 1301 LNLMDSLITDEDLREIQLSHTIEDLNLSYCK-ELNDITPVRRIKS 1344
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 183/410 (44%), Gaps = 36/410 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS + VT+ G+ L C NL++L+ C +S+ +E + + +L L+ + + I +G
Sbjct: 1019 LSVTWVTNEGIRLLSGCKNLRNLELYCCRDVSN--IEPINNIKSLEELTIQNCHNIN-EG 1075
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ L L L L + + L +L L L I+ + D +K +S + LK
Sbjct: 1076 LLKVGMLPRLRVLVLRKLQSTYFSLSSLGESKSLVKLTIEGPEELCD--IKLISNIATLK 1133
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC-QLSD 242
L+I+ + + L L L +L L + C +S+ + SL L++ +L D
Sbjct: 1134 ELKIAHGDRLLNDVGDLGKLPWLHVLTLSHFNMGNTCFESVCKIRSLKSLDITHSFELPD 1193
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTN 301
S LT LE LNL C G LT L L+ L LS T+V +S G ++S +
Sbjct: 1194 --IYHISNLTALEELNLSGCYHIISGWEALTALPRLRVLNLSSTRVTTSYGGYYISRCKS 1251
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L ++NL ++D S LA + +L+ L++ + G +AL +L L L+L + IT
Sbjct: 1252 LITLNLESCDMTDASC--LADIKTLEELHIGKCEELTRGFSALFTLPQLRILNLMDSLIT 1309
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGL 420
D ++LR +++ I+DL NLS L D T + I +
Sbjct: 1310 D---------EDLREIQLS---------HTIEDL------NLSYCKELNDITPVRRIKSI 1345
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 470
+ S R G R L L L + +++ V+ + K L+ R +
Sbjct: 1346 KKMDLHRSSEGRGLREGFRSLLELPCLSWVDIKNANVSFDVYKELKERKV 1395
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 172/419 (41%), Gaps = 55/419 (13%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I + HL + L L+ +T ++ + L NL LDL + +
Sbjct: 193 IDNNDARHLFNIGTLEELAITDTMQLT--NIRGISRLTNLKCLDLNSTNIDDSCIGEISA 250
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
KL L++ CN I D+ P+S L L+ L ++ + GI L L +L +L+L G
Sbjct: 251 CAKLSKLSVSECNNIIDA--TPISQLAALEELNLNSNCHITKGIGTLGMLLRLRMLDLSG 308
Query: 214 CPVTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-----GIGDE 267
V L L G L LNL+ C QL++ S T +E LNL+ C GIG
Sbjct: 309 VSVEDNFLKDLCDCGPLERLNLSYCIQLTN--INPLSNATAIEELNLNGCRRITRGIGVV 366
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSG------------------LRHLSGLTNLESINLSF 309
+ + ++K + LS+ + S G + LS + LE +N+
Sbjct: 367 WALPKLRVLHMKGVHLSEPSLDSVGTGGSLVKVSLDNCAGFGDMTLLSSIVTLEELNIQK 426
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITD---TGLAA--------LTSLTGLTHLD---- 354
+ L L L+ LN+ I+ TG+ A L S+TGL++++
Sbjct: 427 CADIISGVCCLGTLPYLRVLNIKEAHISSLDFTGIGASKSLLQLTLESITGLSNVEALAN 486
Query: 355 --------LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L G D+G L N L+ L++ G ++ + ++ LNLS
Sbjct: 487 ILTLEKLSLLGCNGIDAGIGCLGNLPQLKVLDLSGTNTDSDSLRGLCVSQTIVSLNLSHC 546
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T ++ IS L L LN+S+ +AG L+ L+ L L + +T DI
Sbjct: 547 WKVT--SVFHISALETLNELNLSDCIRINAGWEALEKLQQLHVAILSNTHITDRDISHF 603
>gi|290996873|ref|XP_002681006.1| predicted protein [Naegleria gruberi]
gi|284094629|gb|EFC48262.1| predicted protein [Naegleria gruberi]
Length = 207
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 104/204 (50%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT LN+ G + +S + L L+++R ++ +G + S + +L SLN+
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IG EG ++ + +L L + D ++G G +++S + L S+N++ I + ++
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L SL + +I G ++ + LT L++ G +I D G+ ++ K+L SL I
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQN 406
+ G K I + LT LN+ N
Sbjct: 181 EIGVEGAKFISGMKQLTSLNIDDN 204
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L SL I +++ G Y+ ++ LT L++ + +S + L LN+
Sbjct: 1 MKQLTSLNIGGNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNIYYN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
++ +G + S + +L SLN+ IG EG ++ + L L ++D ++G G + +S
Sbjct: 61 EIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFISE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ +L S+ + + I + ++ + L SLN+ QI D G ++ + LT L++
Sbjct: 121 MKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIGDN 180
Query: 359 RITDSGAAYLRNFKNLRSLEI 379
I GA ++ K L SL I
Sbjct: 181 EIGVEGAKFISGMKQLTSLNI 201
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LTSL+ N I +G K + + +L LD+ R G + + L SLNI +
Sbjct: 1 MKQLTSLNIG-GNEIGVEGAKYMSEMKHLTSLDIHRNEIGVEGSKFISEMKHLTSLNI-Y 58
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N I K +S + +L SL I +++ G Y+ +++LT LN+ + +
Sbjct: 59 YNEIGVEGSKYISEMKHLTSLNIGDNEIGVEGSKYISEMKQLTSLNIADNEIGVEGSKFI 118
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
S + L L + ++ +G + S + +L SLN+ IGDEG ++ + +L L +
Sbjct: 119 SEMKHLTSLYIYYNEIGVEGAKFISEMKHLTSLNISGNQIGDEGSKFISEMKSLTSLNIG 178
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
D ++G G + +SG+ L SLN+D ++
Sbjct: 179 DNEIGVEGAKFISGM------------------------KQLTSLNIDDNELV 207
>gi|290994554|ref|XP_002679897.1| leucine rich repeat domain protein [Naegleria gruberi]
gi|284093515|gb|EFC47153.1| leucine rich repeat domain protein [Naegleria gruberi]
Length = 331
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 106/207 (51%), Gaps = 1/207 (0%)
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G + S L SL +DS IG EG ++G+ L L++S + + G + +SG+ +L
Sbjct: 124 GAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLT 183
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+N+S + I ++ ++ + +L L++ + G +++ + LT+L + +
Sbjct: 184 FLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSE 243
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
GA ++ L +L IC + D G K I + +LT L + N + + + IS + L
Sbjct: 244 GAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGN-RIGPEGAKSISEMKQL 302
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSL 450
L++S +RI G++++K +K+L L
Sbjct: 303 RLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 99/204 (48%)
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S L SL I S++ G + G+ KLT L++ + A S+S + L +L
Sbjct: 126 KIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANYLCAEGAKSISGMDHLTFL 185
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
N++ + +G + S + NL L++ +G EG +++ + L L+ + S G
Sbjct: 186 NISSSNIDQEGIKSISEMKNLTKLDICGNNLGAEGAKSISQMKQLTYLKAYTNSLRSEGA 245
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+S L L ++N+ + I D + ++ + +L L +D +I G +++ + L L
Sbjct: 246 IFISELDKLTTLNICYNEIGDEGAKAISQMPNLTDLRIDGNRIGPEGAKSISEMKQLRLL 305
Query: 354 DLFGARITDSGAAYLRNFKNLRSL 377
D+ RI + G Y++ K+L L
Sbjct: 306 DISFNRIGEEGVKYVKGMKHLTRL 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 133/290 (45%), Gaps = 10/290 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQS---LDFNFCIQISDGGLE 100
++ ++++VI + LS++ ++TDS ++ L+S L F ++ D
Sbjct: 46 ISKQFLNVINERAK--LSIEFK--NITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYL 101
Query: 101 HLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
L GL NLT L N I QG K + L L ++ G + G+ KL
Sbjct: 102 ELVGLMRNLTKLCVG-GNEIGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTE 160
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L+I N + K +SG+ +L L IS S + GI + ++ LT L++ G + A
Sbjct: 161 LDIS-ANYLCAEGAKSISGMDHLTFLNISSSNIDQEGIKSISEMKNLTKLDICGNNLGAE 219
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
S+S + L YL L +G S L L +LN+ IGDEG ++ + NL
Sbjct: 220 GAKSISQMKQLTYLKAYTNSLRSEGAIFISELDKLTTLNICYNEIGDEGAKAISQMPNLT 279
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L + ++G G + +S + L +++SF I + ++ + G+ L L
Sbjct: 280 DLRIDGNRIGPEGAKSISEMKQLRLLDISFNRIGEEGVKYVKGMKHLTRL 329
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 305 INLSFTGISDG---SLRKLAGLSSLKSLN-LDARQITDTGLAALTSLT-GLTHLDLFGAR 359
+++ F I+D ++RK L S SL + ++ D L L LT L + G
Sbjct: 60 LSIEFKNITDSKFNAVRKSQFLESFTSLKFISVEEVFDIKYLELVGLMRNLTKLCVGGNE 119
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
I GA + FK L SL I + G K I ++ LT L++S N L + + ISG
Sbjct: 120 IGLQGAKIVSEFKQLTSLYIDSSQIGTEGAKLISGMTKLTELDISANY-LCAEGAKSISG 178
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L LN+S+S I G++ + +KNL L +
Sbjct: 179 MDHLTFLNISSSNIDQEGIKSISEMKNLTKLDI 211
>gi|371942132|gb|AEX60878.1| internaline [Listeria monocytogenes]
Length = 790
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGDNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D + L L NL LELS + S + LSGLTNL+ LSF G
Sbjct: 146 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I+
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS- 308
Query: 436 AGLRHLKPLKNLRSLT 451
++ PL L +LT
Sbjct: 309 ----NISPLAGLTALT 320
>gi|357487843|ref|XP_003614209.1| Receptor-like protein kinase [Medicago truncatula]
gi|355515544|gb|AES97167.1| Receptor-like protein kinase [Medicago truncatula]
Length = 1078
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 143/316 (45%), Gaps = 32/316 (10%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVT----DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL 102
KW V G + ++DLS ++ DS I NL FNF I + L++L
Sbjct: 67 KWHGVTCKDGH-VTALDLSQESISGGLNDSSAIFSLQGLNLAFNKFNFVIPQALHKLQNL 125
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
R L NL+ F Q K A L LV LDL L+ + +KLE+ NI
Sbjct: 126 RYL-NLSDAGFEE------QVPKEIAHLTRLVTLDL-------SSLITSRQNLKLENPNI 171
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCPVTAA 219
+ + LT++ L + ++ SG + L L+ + +L++ C ++
Sbjct: 172 EML----------VKNLTDITELYLDGVAISSSGDEWGRALSLLEGVRVLSMSSCNLSGP 221
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
SL+ L SL L LN +LS + F+ +NL L + SCG+ + + LK
Sbjct: 222 IDSSLAKLQSLSVLRLNNNKLSSKVPDSFANFSNLTILEISSCGLNGFFPKEIFQIHTLK 281
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L++SD Q S L S L +L+ +NL+ T S ++ L L +++L Q T
Sbjct: 282 VLDISDNQNLSGSLPDFSPLASLKYLNLADTNFSGPLPNTISNLKHLSTIDLSHCQFNGT 341
Query: 340 GLAALTSLTGLTHLDL 355
++++ LT L +LDL
Sbjct: 342 LPSSMSELTQLVYLDL 357
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 21/268 (7%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
+T L+L ++ DS SA+ SL LNL + + + +L NL LNL G
Sbjct: 77 HVTALDLSQESISGGLNDS-SAIFSLQGLNLAFNKFNFVIPQALHKLQNLRYLNLSDAGF 135
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--------LSGLTNLESINLSFTGIS--- 313
++ + L L L+LS L+ + LT++ + L IS
Sbjct: 136 EEQVPKEIAHLTRLVTLDLSSLITSRQNLKLENPNIEMLVKNLTDITELYLDGVAISSSG 195
Query: 314 DGSLRKLAGLSSLKSLNLDARQIT---DTGLAALTSLTGLT-HLDLFGARITDSGAAYLR 369
D R L+ L ++ L++ + ++ D+ LA L SL+ L + + +++ DS A
Sbjct: 196 DEWGRALSLLEGVRVLSMSSCNLSGPIDSSLAKLQSLSVLRLNNNKLSSKVPDSFA---- 251
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
NF NL LEI GL K I + +L +L++S N NL+ +L S L L LN++
Sbjct: 252 NFSNLTILEISSCGLNGFFPKEIFQIHTLKVLDISDNQNLSG-SLPDFSPLASLKYLNLA 310
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ + + LK+L ++ L C+
Sbjct: 311 DTNFSGPLPNTISNLKHLSTIDLSHCQF 338
>gi|357511815|ref|XP_003626196.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501211|gb|AES82414.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 623
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 37/410 (9%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 -QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLEL-SDTQVGSSGLR 294
+++ G + NL +L+L C + D + + C NL CL+L S V GL
Sbjct: 374 IGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLY 433
Query: 295 HL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+ S LE ++L+ +G++D +L+ L+ S L L L I+D GLA + + L
Sbjct: 434 QIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKL 493
Query: 351 THLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
T LDL+ RI D G A L N + +L C +TDAG+K I +L L+ L
Sbjct: 494 TELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NRITDAGLKCISNLGELSDFELRGL 552
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLES 454
N+T G+ ++ VS R+ + L+H + L + R+L S
Sbjct: 553 SNITS---------IGIKAVAVSCKRLANLDLKHCEKLDDTGFRALAFYS 593
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
V D + IA+ +L + L D VT+ GL + C L+ LD C ++D L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
L S L L I+ G+ A L +LDL RC RI GL L G KL
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI-AYLKGLQKLTLLNLEGC 214
LN+ +CN ITD+ +K +S L L ++ S +T GI A ++L L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRI 144
LDL+ C ++
Sbjct: 573 LDLKHCEKL 581
>gi|428298451|ref|YP_007136757.1| small GTP-binding protein [Calothrix sp. PCC 6303]
gi|428234995|gb|AFZ00785.1| small GTP-binding protein [Calothrix sp. PCC 6303]
Length = 1408
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 133/281 (47%), Gaps = 23/281 (8%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER--CTR 143
L +N +I + L L+NLT L+ N I KA A L NL +LDL R T
Sbjct: 478 LSYNRITEIPEA----LAKLTNLTQLNLSDNQIIKIP--KALAKLSNLTQLDLNRNKITE 531
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203
I L L L +L N N IT+ + L+ LTNL L + + + L
Sbjct: 532 IPEALAKLTNLTQLYLRN----NRITEIP-EALAKLTNLTQLDLGTNYNISEIPEAITKL 586
Query: 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263
LT LNL +T + ++ L +L LNL Q+++ E ++LTNL L L S
Sbjct: 587 TNLTQLNLTSSQITEIP-EVIAKLTNLTQLNLTSNQIAE-IPEAIAKLTNLTQLILTSNQ 644
Query: 264 IGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
I + E + LT L L T++ + ++ LTNL + LS+ I++ +A
Sbjct: 645 ITEIPEAIAKLTNLTQLNLTSNQITKIPEA----IAKLTNLTQLILSYNQITEIP-EAIA 699
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
L++L L L + QIT+ A+T LT LT LDL RI++
Sbjct: 700 KLTNLTQLILTSNQITEIP-DAITKLTNLTQLDLSYNRISE 739
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 185/386 (47%), Gaps = 27/386 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ + SNL L FN IS E + LSNL L +N IT + +A A L NL +L
Sbjct: 122 IANLSNLTQLYFNSN-HISKIP-ELIAKLSNLRELHVS-SNKIT-EIPEAIAKLSNLREL 177
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + T I + NL L +L N IT+ + ++ L NL+ LQ+S +K+T+
Sbjct: 178 HVSSNQITEIPEAIANLSNLRELHV----SSNQITEIP-EAIAKLINLRELQVSSNKITE 232
Query: 195 --SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
IA L L+KL L N + + + ++ L +L L+L+ Q++ E ++L
Sbjct: 233 IPEVIAKLTNLRKLYLRNNQITEIP----EVIAKLTNLTQLDLSYNQIT-KISEALAKLI 287
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
NL + L + I E L L NL L+LS Q+ L+ LTNL + L I
Sbjct: 288 NLTQIILHNNKIT-EIPDALAKLINLTQLDLSYNQITKIP-EALAKLTNLTQLILYSNQI 345
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
++ +A L++L L+L QIT AL LT LT L L+ RI++ A L
Sbjct: 346 TEIP-EVIAKLTNLTQLDLSYNQITKIP-EALAKLTNLTQLILYSNRISEIPEA-LAKLI 402
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432
NL + + +++ + + L++LT L+LS N K E ++ L L + + +++
Sbjct: 403 NLTQIILSYNRISEIP-EALAKLTNLTQLDLS--YNQITKIPEALAKLINLTQIILHSNK 459
Query: 433 ITSAGLRHLKPLKNLRSLTLESCKVT 458
IT L L NLR L L ++T
Sbjct: 460 ITEIP-EALAKLTNLRQLYLSYNRIT 484
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 192/404 (47%), Gaps = 49/404 (12%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--E 139
NL LD ++ QI+ E L L+NLT L +N IT + + A L NL +LDL
Sbjct: 311 NLTQLDLSYN-QITKIP-EALAKLTNLTQLILY-SNQIT-EIPEVIAKLTNLTQLDLSYN 366
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
+ T+I L L L +L I + N I++ + L+ L NL + +S +++++ A
Sbjct: 367 QITKIPEALAKLTNLTQL----ILYSNRISEIP-EALAKLINLTQIILSYNRISEIPEA- 420
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L L LT L+L +T ++L+ L +L + L+ ++++ E ++LTNL L L
Sbjct: 421 LAKLTNLTQLDLSYNQITKIP-EALAKLINLTQIILHSNKITE-IPEALAKLTNLRQLYL 478
Query: 260 DSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
I + E L LT NL L LSD Q+ + L+ L+NL ++L+ I++
Sbjct: 479 SYNRITEIPEALAKLT---NLTQLNLSDNQIIKIP-KALAKLSNLTQLDLNRNKITEIP- 533
Query: 318 RKLAGLSSLKSLNLDARQITDTGLA-----------------------ALTSLTGLTHLD 354
LA L++L L L +IT+ A A+T LT LT L+
Sbjct: 534 EALAKLTNLTQLYLRNNRITEIPEALAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLN 593
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L ++IT+ + NL L + + + + I L++LT L L+ N +
Sbjct: 594 LTSSQITEIPEV-IAKLTNLTQLNLTSNQIAEIP-EAIAKLTNLTQLILT--SNQITEIP 649
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
E I+ LT L LN+++++IT + L NL L L ++T
Sbjct: 650 EAIAKLTNLTQLNLTSNQITKIP-EAIAKLTNLTQLILSYNQIT 692
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 24/283 (8%)
Query: 63 DLSGSDVTDSGLIHLKDC----SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
+L+ +++D+ +I + SNL LD N +I++ E L L+NLT L + RNN
Sbjct: 495 NLTQLNLSDNQIIKIPKALAKLSNLTQLDLNRN-KITEIP-EALAKLTNLTQL-YLRNNR 551
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT + +A A L NL +LDL I + L L LN+ ++ ++
Sbjct: 552 IT-EIPEALAKLTNLTQLDLGTNYNISEIPEAITKLTNLTQLNLTSSQITEIPEV--IAK 608
Query: 179 LTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LTNL L ++ +++ + IA L L +L L + + + A ++ L +L LNL
Sbjct: 609 LTNLTQLNLTSNQIAEIPEAIAKLTNLTQLILTSNQITEIPEA----IAKLTNLTQLNLT 664
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 294
Q++ E ++LTNL L L I + E + LT L L T++ +
Sbjct: 665 SNQITK-IPEAIAKLTNLTQLILSYNQITEIPEAIAKLTNLTQLILTSNQITEIPDA--- 720
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
++ LTNL ++LS+ IS+ L L + LN RQI+
Sbjct: 721 -ITKLTNLTQLDLSYNRISEIPLEILDSKDPKEILNY-LRQIS 761
>gi|71650734|ref|XP_814059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878999|gb|EAN92208.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 934
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 188/443 (42%), Gaps = 59/443 (13%)
Query: 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--------------- 91
+W+ + + L +DL S VTD L L+ C L LD +C
Sbjct: 413 QWLRAL----NQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRITSLKCLVGALCD 468
Query: 92 ---------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
++D GL L+ + L +S A++ + L L ++D+ R
Sbjct: 469 SLRELNLTETSVTDEGLVPLKYFAALEWISLEGCGAVS--DVNVLCNLTRLREVDVGRTR 526
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
+ G+V+L L + ++ C +TD+ L L L+ + +S VT+ GIA L G
Sbjct: 527 VTNRGVVSLSQCQALRVMRMRQCYRLTDASF--LGALQQLEEVDLSDCPVTNEGIAELFG 584
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+ L L L+ C + ++ L L L L+L+ + ++G ++ L +L + S
Sbjct: 585 ARSLRKLRLQSCHAVSD-VNFLGGLEHLMLLDLHHTTVDEEGSVGLAQCPQLMTLIMHSV 643
Query: 263 GIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL----SFTGISDGSL 317
+ N L LK L+LS T+V S L + LE+++L + T + L
Sbjct: 644 LVHSLQQWNTALFLPRLKRLDLSTTKVTSDALSFVRMCPILETLSLRGCKNITHLDFLIL 703
Query: 318 RKLAGLSSLKSLNLDAR-------------QITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ +G + DA + D G + + ++T + I +
Sbjct: 704 QPSSGAGVCAIVPRDAEPHDTVGDTIAGKEKNPDDGPSPIETMT------INDGVIKSTA 757
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424
AA + + LR L + G+TD G++ ++ L L L+ N+TD + ++ L+ L
Sbjct: 758 AAAVVDRHRLRELTLSDTGVTDDGLRALQYCPGLERLRLAHCKNVTD--VAVLRWLSQLK 815
Query: 425 SLNVSNSRITSAGLRHLKPLKNL 447
L++S + +T +GL L P NL
Sbjct: 816 ELDLSATGVTGSGLAKLSPSGNL 838
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 68/404 (16%)
Query: 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
LS+ +S S L H C+ L+ LD ++ +G + L+ L+ LS I
Sbjct: 351 LSLCMSSSVSCTRFLRHRSLCA-LRDLDLSYTQVTEEGMYRDVSKLNKLSRLSLEGCRKI 409
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ ++ L L LDL + L L+ +L L+++WC IT +K L G
Sbjct: 410 --ESLQWLRALNQLRVLDLGYSSVTDDSLTALRFCPELAKLDLQWCGRITS--LKCLVGA 465
Query: 180 --TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL-NLN 236
+L+ L ++ + VTD G+ LK L ++LEGC A+ + L NL
Sbjct: 466 LCDSLRELNLTETSVTDEGLVPLKYFAALEWISLEGC----------GAVSDVNVLCNLT 515
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
R + D G +R+TN ++L C L + +C L+D L
Sbjct: 516 RLREVDVG---RTRVTNRGVVSLSQCQA-------LRVMRMRQCYRLTDASF-------L 558
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL-- 353
L LE ++LS +++ + +L G SL+ L L + ++D L GL HL
Sbjct: 559 GALQQLEEVDLSDCPVTNEGIAELFGARSLRKLRLQSCHAVSDVNF-----LGGLEHLML 613
Query: 354 -DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
DL + + G+ L L +L + H + SL N +
Sbjct: 614 LDLHHTTVDEEGSVGLAQCPQLMTL-----------IMHSVLVHSLQQWNTALF------ 656
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
L L L++S +++TS L ++ L +L+L CK
Sbjct: 657 -------LPRLKRLDLSTTKVTSDALSFVRMCPILETLSLRGCK 693
>gi|441432501|ref|YP_007354543.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
moumouvirus]
gi|440383581|gb|AGC02107.1| hypothetical protein Moumou_00581 [Acanthamoeba polyphaga
moumouvirus]
Length = 488
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 207/460 (45%), Gaps = 109/460 (23%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR-IHGGLVNLK 152
ISD HL+ LS++ L+ ++ N IT G F L N+ K+++ C + I+ L L
Sbjct: 53 ISDN---HLQLLSDIYELNLKKCNNITGTG---FKYLKNIKKINISWCRKLINSELQYLN 106
Query: 153 GLMKLESLNIKWCNCITDSDMKP----------LSGLTNLKSLQISCSKVTDSGIAYLKG 202
++K +N+ N I D MK L N+K + +S + +T+S + K
Sbjct: 107 NVIK---INLSRSN-INDEGMKYLLFGKNEIDNLIPRNNIKQINLSNTNITNSSV---KL 159
Query: 203 LQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDG--CEKFSRLTNLESLNL 259
L + ++ + CP + A+CL+ LS + SL R + D C+ L N+E L L
Sbjct: 160 LSNIPVIKINYCPHIDASCLEYLSTVNSLSI----RTTIDRDPNLCQNLKYLKNIEILKL 215
Query: 260 DSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-------- 310
++ IG L L NLK L+ ++Q+ L+ L LE ++L F
Sbjct: 216 NTGQLIGQH----LNYLNNLKVLDAQNSQI---ELKDFDFLKKLEYLSLRFNDYIDYFDI 268
Query: 311 ---------------GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLD 354
GI+D L+ L L+ +NL +IT++GL L ++ ++
Sbjct: 269 INFTNLRVLKLPHCPGINDNCLK---NLGRLEKINLKRCLEITNSGLEHLNNIKN---VN 322
Query: 355 LFGA-RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK----------DLSSLTLLNL 403
+ G ITD G +LR K + ++ C G+TD G+K++K D+ +TL+
Sbjct: 323 ISGCLNITDEGLKHLRKAKKI-NIRYC-YGITDNGLKYLKNVEKIKIGYHDMFDITLIEF 380
Query: 404 SQ-------NCNLTDKTLELISGLTGLVSL-NVSN------SRITSAGLRH-------LK 442
C + + + I+ L GL L NVS+ + IT GL H LK
Sbjct: 381 DHCTSHEINYCEIVRNSSQNITNL-GLAYLHNVSSLKLKKCNNITDEGLIHLSIYNLELK 439
Query: 443 PLKNLRSLTLE-----SCKVTANDIKRLQSRDLPNLVSFR 477
N++ LE + K+ N+IKR S+++PN+ R
Sbjct: 440 YCNNIKGKFLEHLKNANIKIFGNNIKREYSKNIPNIKFVR 479
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
HL +NL+ LD Q S L+ L L LS R N+ I + F NL
Sbjct: 224 HLNYLNNLKVLD----AQNSQIELKDFDFLKKLEYLSLRFNDYIDYFDIINFT---NLRV 276
Query: 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL------------- 182
L L C I+ LK L +LE +N+K C IT+S ++ L+ + N+
Sbjct: 277 LKLPHCPGINDNC--LKNLGRLEKINLKRCLEITNSGLEHLNNIKNVNISGCLNITDEGL 334
Query: 183 ------KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
K + I C +TD+G+ YLK ++K+ + + +T D ++ +
Sbjct: 335 KHLRKAKKINIRYCYGITDNGLKYLKNVEKIKIGYHDMFDITLIEFDHCTSHE------I 388
Query: 236 NRCQLSDDGCEKFSR-----LTNLESLNLDSC-GIGDEGLVNLT 273
N C++ + + + L N+ SL L C I DEGL++L+
Sbjct: 389 NYCEIVRNSSQNITNLGLAYLHNVSSLKLKKCNNITDEGLIHLS 432
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC----GIGDEGLVNLTGLCNL 278
+LS +GS+ YLNL+ +SD+ + L+++ LNL C G G + L N+ +
Sbjct: 36 NLSLIGSIKYLNLSHTNISDNHLQ---LLSDIYELNLKKCNNITGTGFKYLKNIKKINIS 92
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR----------KLAGLSSLKS 328
C +L +++ L L N+ INLS + I+D ++ L +++K
Sbjct: 93 WCRKLINSE--------LQYLNNVIKINLSRSNINDEGMKYLLFGKNEIDNLIPRNNIKQ 144
Query: 329 LNLDARQITDTGLAALTSLTGL-----THLDL-----------FGARIT-DSGAAYLRNF 371
+NL IT++ + L+++ + H+D R T D +N
Sbjct: 145 INLSNTNITNSSVKLLSNIPVIKINYCPHIDASCLEYLSTVNSLSIRTTIDRDPNLCQNL 204
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
K L+++EI +H+ L++L +L+ +QN + K + + L L
Sbjct: 205 KYLKNIEILKLNTGQLIGQHLNYLNNLKVLD-AQNSQIELKDFDFLKKLEYL 255
>gi|357511817|ref|XP_003626197.1| F-box/LRR-repeat protein [Medicago truncatula]
gi|355501212|gb|AES82415.1| F-box/LRR-repeat protein [Medicago truncatula]
Length = 605
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 37/410 (9%)
Query: 69 VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLS---NLTSLSFRRNNAITAQGM 124
VTD GL + CS L+ L +C++ISD G++ L N +S+ + +T + +
Sbjct: 197 VTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFDLNFLDVSYLK---VTNESL 253
Query: 125 KAFAGLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSD-MKPLSGLTN 181
++ A L+ L + C + GL L KG L+++++ CNC++ S + +SG
Sbjct: 254 RSIASLLKLEVFIMVGCYLVDDAGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEG 313
Query: 182 LKSLQI-SC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRC 238
L+ + C S+++ LK L+ L+++ ++G V+ L + S SL L L++C
Sbjct: 314 LEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVELGLSKC 373
Query: 239 -QLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLEL-SDTQVGSSGLR 294
+++ G + NL +L+L C + D + + C NL CL+L S V GL
Sbjct: 374 IGVTNMGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLACLKLESCDMVTEIGLY 433
Query: 295 HL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALT-SLTGL 350
+ S LE ++L+ +G++D +L+ L+ S L L L I+D GLA + + L
Sbjct: 434 QIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKL 493
Query: 351 THLDLFG-ARITDSGAAYLRNFKN---LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
T LDL+ RI D G A L N + +L C +TDAG+K I +L L+ L
Sbjct: 494 TELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYC-NRITDAGLKCISNLGELSDFELRGL 552
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLES 454
N+T G+ ++ VS R+ + L+H + L + R+L S
Sbjct: 553 SNITS---------IGIKAVAVSCKRLANLDLKHCEKLDDTGFRALAFYS 593
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH 101
V D + IA+ +L + L D VT+ GL + C L+ LD C ++D L++
Sbjct: 401 VTDAAISTIANSCPNLACLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKY 460
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRI-HGGLVNLK-GLMKLE 158
L S L L I+ G+ A L +LDL RC RI GL L G KL
Sbjct: 461 LSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLA 520
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGI-AYLKGLQKLTLLNLEGC 214
LN+ +CN ITD+ +K +S L L ++ S +T GI A ++L L+L+ C
Sbjct: 521 MLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHC 578
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 20 LTEVSLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHL 77
+ +++L+ C+ L L LG ++D + IA L +DL + D GL L
Sbjct: 453 VNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAAL 512
Query: 78 KD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVK 135
C+ L L+ +C +I+D GL+ + L L+ R + IT+ G+KA A L
Sbjct: 513 TTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLAN 572
Query: 136 LDLERCTRI 144
LDL+ C ++
Sbjct: 573 LDLKHCEKL 581
>gi|422414916|ref|ZP_16491873.1| internalin A, partial [Listeria innocua FSL J1-023]
gi|313625062|gb|EFR94940.1| internalin A [Listeria innocua FSL J1-023]
Length = 676
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 166/345 (48%), Gaps = 44/345 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNN-QIAD--ISPLANLTNLTGLTLFTN 152
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+K L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 153 QITDIDPLK---NLTNLNRLELSGNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN-- 234
+ LT L+ L IS +KVTD + L KLT NLE T + ++ LG L L+
Sbjct: 204 ANLTTLERLDISSNKVTDISV-----LSKLT--NLERLIATNNQISDITPLGILINLDEL 256
Query: 235 -LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
LN QL D G LTNL +L+L + I + L LT L L L+L Q+ S +
Sbjct: 257 SLNGNQLKDIGT--LVSLTNLTNLDLANNQISN--LAPLTDLTKLTELKLGANQI--SNI 310
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
L+GLT L ++ L + D + ++ L +L L L I+D ++ ++SLT L L
Sbjct: 311 SPLAGLTALTNLELHENQLED--ISPISNLKNLTYLTLYINNISD--ISPVSSLTKLQRL 366
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+ +++D + L N N+ L AG I DL+ L
Sbjct: 367 FFYNNKVSDVSS--LANLTNINWLS--------AGNNQISDLTPL 401
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 50/177 (28%)
Query: 292 GLRHLSG---LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSL 347
G++ ++G L NL IN S ++D + L L+ L + ++ QI D + LA LT+L
Sbjct: 87 GIKSINGVEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDIVMNNNQIADISPLANLTNL 144
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
TGLT LF +ITD L+N NL LE+ G ++D
Sbjct: 145 TGLT---LFTNQITDIDP--LKNLTNLNRLELSGNTISD--------------------- 178
Query: 408 NLTDKTLELISGLTGLVSLNVSNSRITSAG--LRHLKPLKNLRSLTLESCKVTANDI 462
IS L+GL SL + S G + LKPL NL TLE +++N +
Sbjct: 179 ---------ISALSGLTSL-----QQLSFGNQVTDLKPLANLT--TLERLDISSNKV 219
>gi|887026|gb|AAA69527.1| internalin, partial [Listeria monocytogenes]
Length = 346
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 183/383 (47%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L LSNLT L+ N
Sbjct: 26 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 79
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L + N +TD + PL
Sbjct: 80 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL--SFGNQVTD--LXPL 131
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 132 ANLTTLERLDISXNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 176
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 177 -------------ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPL 219
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
GLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 220 XGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 275
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 276 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 322
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 323 ISDLTPLANL----TRITQLGLN 341
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 53/269 (19%)
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
+D L L +L +N + QL+D LT L + +++ I D + L L NL
Sbjct: 18 SIDGLEYLNNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNNQIAD--ITPLANLSNLT 73
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L L + Q+ + + L LTNL + LS ISD + L+GL+SL+ L+ Q+TD
Sbjct: 74 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD- 127
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG----------- 388
L L +LT L LD+ +++D + L NL SL ++D
Sbjct: 128 -LXPLANLTTLERLDISXNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 184
Query: 389 ------VKHIKDLSSLTLL-----------NLSQNCNLTDKTLEL---------ISGLTG 422
+K I L+SLT L NL+ LT K EL IS L G
Sbjct: 185 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLXGLT-KLTELKLGANQISNISPLAG 243
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +L +N + L + P+ NL++LT
Sbjct: 244 LTAL--TNLELNENQLEDISPISNLKNLT 270
>gi|354492507|ref|XP_003508389.1| PREDICTED: F-box/LRR-repeat protein 13 [Cricetulus griseus]
Length = 824
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 199/415 (47%), Gaps = 43/415 (10%)
Query: 24 SLEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCS 81
+L+A C LQ+L + + D+ M I+ +L ++LS + +T+ + L +
Sbjct: 322 TLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLYLNLSNTTITNRTMRLLPRYFP 381
Query: 82 NLQSLDFNFCIQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINLV 134
NLQ+L+ +C + +D GL++L G L L I+ QG + A G+++L
Sbjct: 382 NLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRNIANSCTGIMHLT 441
Query: 135 KLDL----ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
D+ + C + V ++ +++ ++ I+D K L+ NLK ++ +
Sbjct: 442 INDMPTLTDNCVK-----VLVEKCLQISTVVFIGSPHISDCAFKALTS-CNLKKIRFEGN 495
Query: 191 K-VTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCE 246
K +TD+ Y+ K + + + C +T + L SLS L L LNL C ++SD G
Sbjct: 496 KRITDACFKYIDKNYPGINHIYMVDCKTLTDSSLKSLSVLKQLTVLNLTNCIRISDAGLR 555
Query: 247 KF---SRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLT 300
+F S + LNL++C +GD +V L+ C NL L L + + + + ++ +
Sbjct: 556 QFLDGSVSVKIRELNLNNCSLVGDPAIVKLSERCTNLHYLSLRNCEHLTDLAIECIANMQ 615
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLTHLDL-FG 357
+L SI+LS T IS L L+ L+ ++L + ITD G+ A S L HLD+
Sbjct: 616 SLISIDLSGTSISHEGLALLSRHRKLREVSLSECTNITDMGIRAFCRSSMNLEHLDVSHC 675
Query: 358 ARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------HIKDLSSLTLL 401
++++D + F + SL I G +TD G++ HI D+S LL
Sbjct: 676 SQLSDDIIKAVAIFCTQITSLNIAGCPKITDGGLETLSAKCHYLHILDISGCILL 730
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 77/373 (20%)
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG------------ 178
+N+++L+ C L + L+ LN+ C +TD M+ +S
Sbjct: 306 LNVLRLNFRGCFFRTKTLKAVSHCKNLQELNVSDCQSLTDESMRHISEGCPGVLYLNLSN 365
Query: 179 --------------LTNLKSLQIS-CSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAAC 220
NL++L ++ C K TD G+ YL G KL L+L GC T
Sbjct: 366 TTITNRTMRLLPRYFPNLQNLNLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGC--TQIS 423
Query: 221 LDSLSALGS----LFYLNLNRCQLSDDGC-----EKFSRLTNLESLNLDSCGIGDEGLVN 271
+ + + + +L +N D C EK +++ + + + S I D
Sbjct: 424 VQGFRNIANSCTGIMHLTINDMPTLTDNCVKVLVEKCLQISTV--VFIGSPHISDCAFKA 481
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
LT CNLK ++ G + ++ + I+ ++ GI+ + +
Sbjct: 482 LTS-CNLK-------KIRFEGNKRITDAC-FKYIDKNYPGINHIYM-------------V 519
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF------KNLRSLEICGGGL 384
D + +TD+ L +L+ L LT L+L RI+D+G LR F +R L + L
Sbjct: 520 DCKTLTDSSLKSLSVLKQLTVLNLTNCIRISDAG---LRQFLDGSVSVKIRELNLNNCSL 576
Query: 385 T--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
A VK + ++L L+L +LTD +E I+ + L+S+++S + I+ GL L
Sbjct: 577 VGDPAIVKLSERCTNLHYLSLRNCEHLTDLAIECIANMQSLISIDLSGTSISHEGLALLS 636
Query: 443 PLKNLRSLTLESC 455
+ LR ++L C
Sbjct: 637 RHRKLREVSLSEC 649
>gi|298360234|gb|ADI77696.1| internalin A [Listeria monocytogenes]
gi|298360500|gb|ADI77829.1| internalin A [Listeria monocytogenes]
gi|298360708|gb|ADI77933.1| internalin A [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 185/383 (48%), Gaps = 67/383 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LK+ + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DLDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L KLT NLE T + ++ LG
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLG-------- 248
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 249 -------------ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISSLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNDISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGLR 439
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGLN 413
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 129/273 (47%), Gaps = 40/273 (14%)
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
G+ YL L ++ N + +T L L L + +N Q++D + LTNL
Sbjct: 93 GVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIAD--ITPLANLTNLT 145
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
L L + I D L L L NL LELS + S + LSGLT+L+ LSF G
Sbjct: 146 GLTLFNNQITD--LDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQ--LSF-GNQVT 198
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ LA L++L+ L++ + +++D ++ L LT L L +I+D L NL
Sbjct: 199 DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 254
Query: 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
L + G L D G + L++LT L+L+ N L +SGLT L L + ++I++
Sbjct: 255 ELSLNGNQLKDIGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQISN 309
Query: 436 ----AG-------------LRHLKPLKNLRSLT 451
AG L + P+ NL++LT
Sbjct: 310 ISSLAGLTALTNLELNENQLEDISPISNLKNLT 342
>gi|332661885|ref|YP_004451355.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
gi|332337382|gb|AEE54482.1| small GTP-binding protein [Haliscomenobacter hydrossis DSM 1100]
Length = 1141
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 157/312 (50%), Gaps = 28/312 (8%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q+SD L LS L++LSF + + T + ++ + R T L +L+
Sbjct: 191 QVSD-----LDALSALSNLSF-LDLSFTQVSDLSGLSTLSNLSSLNLRDT-YSSDLRSLR 243
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L+ L L + SD+ L+ L NL SL +S ++V+D ++ L L L+ L+L
Sbjct: 244 PLINLSDLKLSSTEV---SDLSVLAHLHNLSSLHLSYTQVSD--LSALSALSNLSFLDLS 298
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
V+ L +LSAL +L +LNL+ Q+SD L NL ++L S + D L L
Sbjct: 299 DTQVSD--LSALSALYNLSFLNLSNTQISD--LSALRHLLNLSIIDLSSTELTD--LTTL 352
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL + L+ T +S L LS L+NL + LS T SD L L+ L +L SLNL
Sbjct: 353 RHLQNLNSINLNKTH--ASDLSALSNLSNLSELYLSDTQASD--LSALSALFNLNSLNLS 408
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
Q+ +GL+AL +L L+ LDL + D L N +NL SL++ + D + +
Sbjct: 409 YTQV--SGLSALANLQNLSSLDLGDTEVFDLSP--LANLQNLSSLDLSDTEVVD--LSPM 462
Query: 393 KDLSSLTLLNLS 404
+LS L LNLS
Sbjct: 463 INLSKLKYLNLS 474
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 158/356 (44%), Gaps = 72/356 (20%)
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
+ + LI L ++L R TR+ N +T L L+NL
Sbjct: 129 LYPLSNLIYLKHINLSR-TRL--------------------PNLVT------LGHLSNLS 161
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD- 242
L +S ++VTD L +L + LD+LSAL +L +L+L+ Q+SD
Sbjct: 162 FLDLSYTQVTDLS----DLSTLSNLNSLNLSDTQVSDLDALSALSNLSFLDLSFTQVSDL 217
Query: 243 -------------------DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L NL L L S + D L L L NL L L
Sbjct: 218 SGLSTLSNLSSLNLRDTYSSDLRSLRPLINLSDLKLSSTEVSD--LSVLAHLHNLSSLHL 275
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
S TQV S L LS L+NL ++LS T +SD L L+ L +L LNL QI+D L+A
Sbjct: 276 SYTQV--SDLSALSALSNLSFLDLSDTQVSD--LSALSALYNLSFLNLSNTQISD--LSA 329
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLN 402
L L L+ +DL +TD LR+ +NL S+ + H DLS+L+ L N
Sbjct: 330 LRHLLNLSIIDLSSTELTDLTT--LRHLQNLNSINL--------NKTHASDLSALSNLSN 379
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKV 457
LS+ L+D +S L+ L +LN N T +GL L L+NL SL L +V
Sbjct: 380 LSE-LYLSDTQASDLSALSALFNLNSLNLSYTQVSGLSALANLQNLSSLDLGDTEV 434
>gi|167861956|gb|ACA05677.1| InlA [Listeria monocytogenes]
Length = 800
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 182/382 (47%), Gaps = 67/382 (17%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L ++ S + +TD + LKD + L + N QI+D + L L+NLT L+ N
Sbjct: 98 NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
N IT + L NL +L+L T + L GL L+ L+ N +TD +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ LT L+ L IS +KV+D + L L L SL N
Sbjct: 204 ANLTTLERLDISSNKVSD-----------------------ISVLARLPTLESLIATN-- 238
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
Q+SD LTNL+ L+L+ + D G L L NL L+L++ Q+ S L L
Sbjct: 239 -NQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SNLAPL 291
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
SGLT L + L IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+
Sbjct: 292 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 347
Query: 357 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
I+D + + + L+ L ++D V + +L+++ L+ N
Sbjct: 348 FNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ--------- 394
Query: 417 ISGLTGLVSLNVSNSRITSAGL 438
IS LT L +L +RIT GL
Sbjct: 395 ISDLTPLANL----TRITQLGL 412
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 162/365 (44%), Gaps = 72/365 (19%)
Query: 91 CIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV----KLDLERCTRIHG 146
I S+G ++ T ++ +A A+ MK G N+ + DL++ T +
Sbjct: 24 WINTSNGTNAQAATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA 83
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +K + LE LN NL + S +++TD I LK L KL
Sbjct: 84 DRLGIKSIDGLEYLN-------------------NLTQINFSNNQLTD--ITPLKDLTKL 122
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
+ + + A + L+ L +L L L Q++D + LTNL L L S I D
Sbjct: 123 VDILMNNNQI--ADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 178
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ L+GL NL+ L + QV + L+ L+ LT LE +++S +SD S+ LA L +L
Sbjct: 179 --ISALSGLTNLQQLSFGN-QV--TDLKPLANLTTLERLDISSNKVSDISV--LARLPTL 231
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SL QI+D +T L LT+LD L + G L D
Sbjct: 232 ESLIATNNQISD-----ITPLGILTNLD---------------------ELSLNGNQLKD 265
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L++LT L+L+ N L +SGLT L L + ++I+ ++ PL
Sbjct: 266 IGT--LASLTNLTDLDLANNQ---ISNLAPLSGLTKLTELKLGANQIS-----NISPLAG 315
Query: 447 LRSLT 451
L +LT
Sbjct: 316 LTALT 320
>gi|157118403|ref|XP_001659098.1| F-Box protein, putative [Aedes aegypti]
gi|108875753|gb|EAT39978.1| AAEL008262-PA, partial [Aedes aegypti]
Length = 381
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 140/248 (56%), Gaps = 21/248 (8%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKLT 207
+G+ K++ L C ITD + + + L NL++L +S C +VTDS + + + L+ +
Sbjct: 132 RGIKKVQILG---CYNITDISLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVE 188
Query: 208 LLNLEGCP--VTAACLDSLSALG--SLFYLNLNRCQ-LSDDGCEKFSR-LTNLESLNLDS 261
+L L GC A L +A G +L YL L CQ LSD+ ++ LT+L+S+NL
Sbjct: 189 ILELGGCSNITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSF 248
Query: 262 C-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSL 317
C + D GL +L + L+ L L + G+ +L+ G + + S+++SF I+D +L
Sbjct: 249 CVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQAL 308
Query: 318 RKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFG-ARITDSGAAYLRN-FKN 373
++ GL LKSL+L A QITD GLA + SL L L++ AR+TD G YL + N
Sbjct: 309 THISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNN 368
Query: 374 LRSLEICG 381
LR++++ G
Sbjct: 369 LRAIDLYG 376
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 29/232 (12%)
Query: 73 GLIHLKDCSNLQSLDFNFCIQISDGGL----EHLR--------GLSNLTSLSFRRNNAIT 120
G + D NL++LD + C Q++D L +HL+ G SN+T+ + T
Sbjct: 151 GYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKE--T 208
Query: 121 AQGMKA--FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
A G A + GL + +L E I GL +LK S+N+ +C +TDS +K L+
Sbjct: 209 ADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLK------SINLSFCVSVTDSGLKHLAK 262
Query: 179 LTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS-ALGSLFYLN 234
+T L+ L + +C ++D G+AYL +G + L++ C + L +S L L L+
Sbjct: 263 MTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLS 322
Query: 235 LNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLEL 283
L+ CQ++D+G K ++ L +LE+LN+ C + D+GL L L NL+ ++L
Sbjct: 323 LSACQITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDL 374
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 14/200 (7%)
Query: 233 LNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCG--IGDEGLVNLT--GLCNLKCLELSDT 286
L+L+ C Q++D + ++ L N+E L L C GL T G L+ L L D
Sbjct: 164 LDLSLCKQVTDSSLGRIAQHLKNVEILELGGCSNITNTAGLSKETADGTPALEYLGLQDC 223
Query: 287 Q-VGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 342
Q + LRH++ GLT+L+SINLSF ++D L+ LA ++ L+ LNL A I+D G+A
Sbjct: 224 QRLSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMA 283
Query: 343 ALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI-KDLSSL 398
LT + + LD+ F +I D ++ + +L+SL + +TD G+ I K L L
Sbjct: 284 YLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDL 343
Query: 399 TLLNLSQNCNLTDKTLELIS 418
LN+ Q +TDK LE ++
Sbjct: 344 ETLNIGQCARVTDKGLEYLA 363
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
++D L H+ + ++L+S++ +FC+ ++D GL+HL ++ L L+ R + I+ GM
Sbjct: 226 LSDEALRHIAQGLTSLKSINLSFCVSVTDSGLKHLAKMTKLEELNLRACDNISDIGMAYL 285
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
G ++ LD+ C +I L ++ +GL L+SL++ C + K L +L++
Sbjct: 286 TEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSACQITDEGLAKIAKSLHDLET 345
Query: 185 LQI-SCSKVTDSGIAYLKG-LQKLTLLNLEGC 214
L I C++VTD G+ YL L L ++L GC
Sbjct: 346 LNIGQCARVTDKGLEYLADELNNLRAIDLYGC 377
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 105/201 (52%), Gaps = 17/201 (8%)
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNLDA-R 334
L C ++D S G + L NL +++LS ++D SL ++A L +++ L L
Sbjct: 140 LGCYNITDI---SLGYVFSTDLLNLRTLDLSLCKQVTDSSLGRIAQHLKNVEILELGGCS 196
Query: 335 QITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDA 387
IT+T + + G L+ G R++D ++ + +L+S L C +TD+
Sbjct: 197 NITNTAGLSKETADGTPALEYLGLQDCQRLSDEALRHIAQGLTSLKSINLSFCVS-VTDS 255
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPL 444
G+KH+ ++ L LNL N++D + L G + ++SL+VS +I L H+ + L
Sbjct: 256 GLKHLAKMTKLEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGL 315
Query: 445 KNLRSLTLESCKVTANDIKRL 465
+L+SL+L +C++T + ++
Sbjct: 316 FHLKSLSLSACQITDEGLAKI 336
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNF 90
L++L L ++D M + GS+++S+D+S D + D L H+ + +L+SL +
Sbjct: 266 LEELNLRACDNISDIGMAYLTEGGSAIISLDVSFCDKIADQALTHISQGLFHLKSLSLSA 325
Query: 91 CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-LINLVKLDLERCTRI 144
C QI+D GL + + L +L +L+ + +T +G++ A L NL +DL CTR+
Sbjct: 326 C-QITDEGLAKIAKSLHDLETLNIGQCARVTDKGLEYLADELNNLRAIDLYGCTRL 380
>gi|290983780|ref|XP_002674606.1| predicted protein [Naegleria gruberi]
gi|284088197|gb|EFC41862.1| predicted protein [Naegleria gruberi]
Length = 232
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 1/207 (0%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+L D G E +LT L LN+ + EG ++ L L L ++ +G G ++
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGE 72
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L+ L +++++ I++ R ++ L L L+L+ +I G L L+ L L+L
Sbjct: 73 LSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLAN 132
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D GA + +NL L + + + G+K I +L LT LN+SQN ++++ +LIS
Sbjct: 133 YIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN-RISNEEAQLIS 191
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLK 445
G+ L L ++++I + G + L ++
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKLHEME 218
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 1/205 (0%)
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D G + L L L +++ + G + LT L +N++F GI D + LS
Sbjct: 16 DAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIGELSK 75
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L +L++ + IT+ G +++ L LT LDL RI GA YL L+ L + +
Sbjct: 76 LTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLANYIQ 135
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
D G K + L +LT LNL++N + ++ ++ I L L LN+S +RI++ + + +K
Sbjct: 136 DKGAKSVSQLENLTELNLTRNS-IQNEGIKSIIELPLLTKLNISQNRISNEEAQLISGMK 194
Query: 446 NLRSLTLESCKVTANDIKRLQSRDL 470
L+ L ++ K+L +L
Sbjct: 195 QLKELVATHTQIDNEGAKKLHEMEL 219
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 1/226 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L I +++ D+G + L LT LN+ ++ +S+ L L LN+N
Sbjct: 1 MNRLTKLSIGFNRLHDAGAEIIGQLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D G L+ L +L++ S I +EG +++ L L L+L+D ++ G ++L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGE 120
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
L+ L+ +NL I D + ++ L +L LNL I + G+ ++ L LT L++
Sbjct: 121 LSQLKKLNLLANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQN 180
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
RI++ A + K L+ L + + G K + ++ L +L+LS
Sbjct: 181 RISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM-ELDILDLS 225
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
Query: 143 RIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
R+H + G L L LN+ N ++ + + LT L L I+ + + D G AY+
Sbjct: 13 RLHDAGAEIIGQLTTLTELNVAE-NFLSHEGAESICKLTQLTVLNINFNGIGDLGAAYIG 71
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
L KLT L++ +T S+S L L L+LN +++ G + L+ L+ LNL +
Sbjct: 72 ELSKLTNLSIASNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLGELSQLKKLNLLA 131
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
I D+G +++ L NL L L+ + + G++ + L L +N+S IS+ + ++
Sbjct: 132 NYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNISQNRISNEEAQLIS 191
Query: 322 GLSSLKSLNLDARQITDTGLAALTSL 347
G+ LK L QI + G L +
Sbjct: 192 GMKQLKELVATHTQIDNEGAKKLHEM 217
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 5/219 (2%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L L +G + ++D ++I Q ++L ++++ + ++ G + + L L+ NF
Sbjct: 4 LTKLSIG-FNRLHDAGAEIIG-QLTTLTELNVAENFLSHEGAESICKLTQLTVLNINFN- 60
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
I D G ++ LS LT+LS +N IT +G ++ + L L LDL G L
Sbjct: 61 GIGDLGAAYIGELSKLTNLSIA-SNFITEEGARSISKLKQLTILDLNDNRIACKGAQYLG 119
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L +L+ LN+ N I D K +S L NL L ++ + + + GI + L LT LN+
Sbjct: 120 ELSQLKKLNL-LANYIQDKGAKSVSQLENLTELNLTRNSIQNEGIKSIIELPLLTKLNIS 178
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
++ +S + L L Q+ ++G +K +
Sbjct: 179 QNRISNEEAQLISGMKQLKELVATHTQIDNEGAKKLHEM 217
>gi|405754510|ref|YP_006677974.1| internalin F [Listeria monocytogenes SLCC2540]
gi|404223710|emb|CBY75072.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2540]
Length = 823
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKAKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 123/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ A+ + A L +L
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKAKDVTPIANLTDLY 213
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
L L + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 214 SLSLN-----YNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S+ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKA-----KDVTPIANLTDL 212
>gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]
Length = 663
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 203/441 (46%), Gaps = 45/441 (10%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
L+ LCL + D + +IA++ L S+DLS +T+ L + +L+ L C
Sbjct: 187 LKLLCLNWCLHITDLGVGLIATKCKELRSLDLSFLPITEKCLPTILQLQHLEELILEECH 246
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNL 151
I D GLE L+ SL F L+L RC I H GL +L
Sbjct: 247 GIDDEGLEALKRNCKRNSLKF----------------------LNLSRCPSISHSGLSSL 284
Query: 152 -KGLMKLESLNIKWCNCIT-DSDM-KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLT 207
G L+ LN+ + + ++ +DM K L + L+S+++ C +T SG+ + + L
Sbjct: 285 IIGSENLQKLNLSYGSSVSITTDMAKCLHNFSGLQSIKLDCCSLTTSGVKTIANWRASLK 344
Query: 208 LLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLSDDGC--EKFSRLTNLESLNLDSCG 263
L+L C VT CL L L L++ C+ G S + L SL ++SC
Sbjct: 345 ELSLSKCAGVTDECLSILVQKHKQLRKLDITCCRKITYGSINSITSSCSFLVSLKMESCS 404
Query: 264 -IGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 320
+ E V + C L+ L+L+D ++ + GL+ +S + L + L I+D L +
Sbjct: 405 LVPREAYVLIGQRCPYLEELDLTDNEIDNEGLKSISKCSRLSVLKLGICLNINDDGLCHI 464
Query: 321 A-GLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNL 374
A G +K L+L + ITD G+AA G L++ + +ITDS L NL
Sbjct: 465 ASGCPKIKELDLYRSTGITDRGIAATAG--GCPALEMINIAYNDKITDSSLISLSKCLNL 522
Query: 375 RSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNS 431
++LEI G ++ G+ I LT+L++ + N+ D L L L +N+S
Sbjct: 523 KALEIRGCCCISSIGLSAIAMGCKQLTVLDIKKCVNVNDDGMLPLAQFSHNLKQINLSYC 582
Query: 432 RITSAGLRHLKPLKNLRSLTL 452
+T GL L + LR++T+
Sbjct: 583 SVTDVGLLSLASINCLRNMTI 603
>gi|290979178|ref|XP_002672311.1| predicted protein [Naegleria gruberi]
gi|284085887|gb|EFC39567.1| predicted protein [Naegleria gruberi]
Length = 347
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 121/287 (42%), Gaps = 27/287 (9%)
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
S K+ D + + +LT L ++ V L + L L L++ C + +
Sbjct: 81 SVYKLNDEWFDVFEKMNQLTELQIDW--VREIDLKRIVDLKQLTKLSVCSCTEDVEQVKL 138
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ L L + S GDEG + G+ L LE+ ++G G + L L L+ + +
Sbjct: 139 IGEMKQLTELKISSNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRI 198
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
S + + ++ L L +L +D Q+ G A++ + LT+L + +I +GA
Sbjct: 199 SENALGASGAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKS 258
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
+ K L +L G + D G K I ++ LT L+LS N
Sbjct: 259 ISKMKQLLTLSADGNAIGDKGAKAIGEMKQLTSLHLSFN--------------------- 297
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
I G + + LKNLR L + + +++ + LQ+ LP L+
Sbjct: 298 ----HIGFEGAKAISELKNLRYLNMTTNPLSSEGAQLLQNMKLPKLI 340
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 16/308 (5%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVT---DSGLIHLKDCSNLQSLDFNFCIQISDGGLE 100
++ +W++VI + S LS S V + G +H + F +++D +
Sbjct: 39 ISKQWLEVIKQR--SKLSACFSNPKVNRVMEKGFLHY-----FVKIKFKSVYKLNDEWFD 91
Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK-LES 159
++ LT L + + +K L L KL + CT V L G MK L
Sbjct: 92 VFEKMNQLTELQI---DWVREIDLKRIVDLKQLTKLSVCSCTE-DVEQVKLIGEMKQLTE 147
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
L I N D K + G+T L L+I +++ G L L++L L + + A+
Sbjct: 148 LKIS-SNKFGDEGAKIIGGMTQLTKLEIKSNRIGKLGAKALCNLKELKELRISENALGAS 206
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279
S+S L L L ++ QL +G + S + NL +L++ S IG G +++ + L
Sbjct: 207 GAKSISQLKQLTTLTIDYNQLGPEGAKAISEIPNLTNLSICSDQIGAAGAKSISKMKQLL 266
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L +G G + + + L S++LSF I + ++ L +L+ LN+ ++
Sbjct: 267 TLSADGNAIGDKGAKAIGEMKQLTSLHLSFNHIGFEGAKAISELKNLRYLNMTTNPLSSE 326
Query: 340 GLAALTSL 347
G L ++
Sbjct: 327 GAQLLQNM 334
>gi|422408524|ref|ZP_16485485.1| internalin A, partial [Listeria monocytogenes FSL F2-208]
gi|313610685|gb|EFR85741.1| internalin A [Listeria monocytogenes FSL F2-208]
Length = 439
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 168/347 (48%), Gaps = 64/347 (18%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + A L NL +L++ T + L
Sbjct: 6 QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNLNRLEITGNTI--SDISVLS 58
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D + L KLT NLE
Sbjct: 59 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-----LAKLT--NLE 107
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
T + ++ LG LTNL+ L+L+ + D G L
Sbjct: 108 RLIATNNQISDITPLG---------------------ILTNLDELSLNGNQLKDIG--TL 144
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL L++++ Q+ S L LSGLT L + L + IS+ + + GL++L SL L
Sbjct: 145 ASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQISN--ISPIEGLTALTSLELH 200
Query: 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
Q+ D ++ +++L LT+L L+ I+D + + + L+ L ++D V +
Sbjct: 201 ENQLED--ISPISNLKNLTYLALYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSL 254
Query: 393 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+L+++ L+ + N IS LT L +L +RI+ GL
Sbjct: 255 ANLTNINWLSAAHNQ---------ISDLTPLANL----TRISELGLN 288
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGL 293
+N Q++D + LTNL L L + I D + L NLT NL LE++ + S +
Sbjct: 2 MNNNQITD--ISPLANLTNLTGLTLFNNQITDIDALKNLT---NLNRLEITGNTI--SDI 54
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
LSGLT+L+ LSF G L+ LA L++L+ L++ + +++D ++ L LT L L
Sbjct: 55 SVLSGLTSLQQ--LSF-GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLERL 109
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+I+D L NL L + G L D G + L++LT L+++ N
Sbjct: 110 IATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTSLDVANNQ---ISN 162
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
L +SGLT L L + ++I+ ++ P++ L +LT
Sbjct: 163 LAPLSGLTKLTELELGYNQIS-----NISPIEGLTALT 195
>gi|290990752|ref|XP_002678000.1| predicted protein [Naegleria gruberi]
gi|284091610|gb|EFC45256.1| predicted protein [Naegleria gruberi]
Length = 369
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 3/292 (1%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSD-MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
L N + L + ++ + + N I D + LS + NL L I+ + + + + L++L
Sbjct: 77 LRNSQVLNSIRNVKVNYANLIRDKQFLTVLSLMKNLTCLSINENGLKEKEAKLISKLKEL 136
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T L++ V +S + +L L + + +G S++ L SL + I
Sbjct: 137 TYLDIGKNSVGRKGAKYISKMKNLKTLQIPLNNIGPNGAISISKMKQLTSLVICWNMIDL 196
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSS 325
EG + + NLK L++S G G+R LS GL NL S+++S I+ + L + +
Sbjct: 197 EGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLVNLTSLDVSRNEINPEGAKYLGEMKN 256
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L L + G+ ++ L LT LD+ I GA +++ KNL+ L + +
Sbjct: 257 LIELRATFNIVELGGIKFISQLRNLTLLDVQSNIIESEGARFIKKLKNLKILNVSATKMN 316
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
G +I +++ LT L++S N + + IS L LV L++S++ I G
Sbjct: 317 ATGANYIGEMTQLTELDISYN-HFGVEGARAISRLPNLVILDISSNNIGPEG 367
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 8/258 (3%)
Query: 91 CIQISDGGLEH-----LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
C+ I++ GL+ + L LT L +N ++ +G K + + NL L +
Sbjct: 114 CLSINENGLKEKEAKLISKLKELTYLDIGKN-SVGRKGAKYISKMKNLKTLQIPLNNIGP 172
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQ 204
G +++ + +L SL I W N I + ++ + NLK L+IS G+ L GL
Sbjct: 173 NGAISISKMKQLTSLVICW-NMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRLLSSGLV 231
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
LT L++ + L + +L L + G + S+L NL L++ S I
Sbjct: 232 NLTSLDVSRNEINPEGAKYLGEMKNLIELRATFNIVELGGIKFISQLRNLTLLDVQSNII 291
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
EG + L NLK L +S T++ ++G ++ +T L +++S+ R ++ L
Sbjct: 292 ESEGARFIKKLKNLKILNVSATKMNATGANYIGEMTQLTELDISYNHFGVEGARAISRLP 351
Query: 325 SLKSLNLDARQITDTGLA 342
+L L++ + I G A
Sbjct: 352 NLVILDISSNNIGPEGAA 369
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
LS + NL ++++ G+ + + ++ L L L++ + G ++ + L L +
Sbjct: 106 LSLMKNLTCLSINENGLKEKEAKLISKLKELTYLDIGKNSVGRKGAKYISKMKNLKTLQI 165
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
I +GA + K L SL IC + G + I +++L L +S N +
Sbjct: 166 PLNNIGPNGAISISKMKQLTSLVICWNMIDLEGFEAIARMNNLKYLKISGYYNGPEGMRL 225
Query: 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
L SGL L SL+VS + I G ++L +KNL L
Sbjct: 226 LSSGLVNLTSLDVSRNEINPEGAKYLGEMKNLIEL 260
>gi|302754944|ref|XP_002960896.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
gi|300171835|gb|EFJ38435.1| hypothetical protein SELMODRAFT_75506 [Selaginella moellendorffii]
Length = 637
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 201/420 (47%), Gaps = 54/420 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALA---------- 114
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
+ L L+++ CN + D ++ + L NL+ L ++ C ++D+G+
Sbjct: 115 -------------RDCSALVELDLRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGL 161
Query: 198 AYLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
L G +KL ++ L+GC ++ A L L++ L ++++ +++DDG S L +L
Sbjct: 162 GCLAAGCKKLQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSL 221
Query: 255 ESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 309
LNL +C +GD GL T L +L C S T VG S L S L+ + L F
Sbjct: 222 RVLNLAACSNVGDAGLTRTSTSLLELDLSCCR-SVTNVGISFLSKRS----LQFLKLGFC 276
Query: 310 ------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR-IT 361
+ I+ L + L+ +++L L +I GL + S L+ L L R +T
Sbjct: 277 SPVKKRSQITGQLLEAVGKLTQIQTLKLAGCEIAGDGLRFVGSCCLQLSDLSLSKCRGVT 336
Query: 362 DSG-AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCN-LTDKTLEL- 416
DSG A+ KNLR L++ C LT+ +I SS L++L + C LT+ + L
Sbjct: 337 DSGMASIFHGCKNLRKLDLTCCLDLTEITACNIAR-SSAGLVSLKIEACRILTENNIPLL 395
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+ + L L+V++ I AGL + K L++L L CKV+ N I+ + R+ +L+
Sbjct: 396 MERCSCLEELDVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHV-GRNCSDLIEL 454
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 191/410 (46%), Gaps = 25/410 (6%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC------TRIHG 146
+ D GL R ++L L ++T G+ +F +L L L C ++I G
Sbjct: 231 NVGDAGLT--RTSTSLLELDLSCCRSVTNVGI-SFLSKRSLQFLKLGFCSPVKKRSQITG 287
Query: 147 GLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA-YLKGL 203
L+ G L ++++L + C D S L L +S C VTDSG+A G
Sbjct: 288 QLLEAVGKLTQIQTLKLAGCEIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGC 347
Query: 204 QKLTLLNLEGC---PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSRLTNLESLN 258
+ L L+L C AC + S+ G L L + C++ + R + LE L+
Sbjct: 348 KNLRKLDLTCCLDLTEITACNIARSSAG-LVSLKIEACRILTENNIPLLMERCSCLEELD 406
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG-ISDGS 316
+ C I D GL + LK L+L +V +G+ H+ ++L ++L +G + D
Sbjct: 407 VTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDAG 466
Query: 317 LRKL-AGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374
+ + AG L+ LNL ITD + +++ L+ L L++ G + L FKNL
Sbjct: 467 VASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEIRGCKGVGL-EKKLPEFKNL 525
Query: 375 RSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGL 423
L++ G+ D G+ I +L LNLS C +++ L ++ L L
Sbjct: 526 VELDLKHCGIGDRGMTSIVHCFPNLQQLNLSY-CRISNAALVMLGNLRCL 574
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 34/229 (14%)
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+R T +ESL+L SC I DE L L G EL+ T++ S GL + G T +
Sbjct: 61 LARHTGIESLDLSSCIKITDEDLA-LVG-------ELAGTRLRSLGLARMGGFTVAGIVA 112
Query: 307 LS-------------FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 352
L+ + D L + L +L+ L+L I+D GL L + G
Sbjct: 113 LARDCSALVELDLRCCNSLGDLELAAVCQLGNLRKLDLTGCYMISDAGLGCLAA--GCKK 170
Query: 353 LDLFGAR----ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L + + I+D+G +L N K L ++++ +TD GV+ + +L SL +LNL+
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 408 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
N+ D L S T L+ L++S R +T+ G+ L ++L+ L L C
Sbjct: 231 NVGDAGLTRTS--TSLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFC 276
>gi|421897505|ref|ZP_16327873.1| lrr-gala family type III effector protein (gala 4) [Ralstonia
solanacearum MolK2]
gi|206588711|emb|CAQ35674.1| lrr-gala family type III effector protein (gala 4) [Ralstonia
solanacearum MolK2]
Length = 460
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 5/241 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S +T GIA+L L L L++ GC + A L+
Sbjct: 132 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L LNL R + D G F+R L +LN+ S GIG G+ L + L++S+
Sbjct: 189 GHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVSSNGIGPVGVRALAANTTITTLDISN 248
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G R L+ T L ++ S GI + LA ++L SL+L I G+ AL
Sbjct: 249 NEIGDEGARALASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 308
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L L G + A L L L + + +AG + ++L LNLS
Sbjct: 309 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSN 368
Query: 406 N 406
N
Sbjct: 369 N 369
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 4/284 (1%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+ L++ C DS + L+G L +L + + + D+G+A +KLT LN+
Sbjct: 167 LPLDRLDVSGCELNADS-ARLLAGHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVSSN 225
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ + +L+A ++ L+++ ++ D+G + T L L+ CGIG EG L
Sbjct: 226 GIGPVGVRALAANTTITTLDISNNEIGDEGARALASNTALTRLDASDCGIGPEGTQALAT 285
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L+LS + + G+ L T L +++ + LA ++L LNL +
Sbjct: 286 STTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSN 345
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I + G A + T L L+L I + + N K L +L++ + D + +
Sbjct: 346 AIGNAGARAFGANTTLVELNLSNNGI-ERVPEWADNGK-LTTLDLSNNQIGDTAAQVLAA 403
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+LT LN+ N + D ++G T L +LNVS +RI AG+
Sbjct: 404 SHTLTTLNVGSN-RIGDTGACALAGNTTLTTLNVSLNRIGKAGM 446
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 140/316 (44%), Gaps = 18/316 (5%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 133 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 185
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I ++ L+ T + +L
Sbjct: 186 LLAGHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVS-SNGIGPVGVRALAANTTITTL 244
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 245 DISNNEIGDEGARALASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 304
Query: 246 EKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E R T L +L+ +CG +G L L L LS +G++G R T L
Sbjct: 305 EALGRNTTLRTLH--ACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLV 362
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NLS GI + + A L +L+L QI DT L + LT L++ RI D+
Sbjct: 363 ELNLSNNGIE--RVPEWADNGKLTTLDLSNNQIGDTAAQVLAASHTLTTLNVGSNRIGDT 420
Query: 364 GAAYLRNFKNLRSLEI 379
GA L L +L +
Sbjct: 421 GACALAGNTTLTTLNV 436
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 136/323 (42%), Gaps = 32/323 (9%)
Query: 58 SLLSVDLS--GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SL +DLS +T G+ HL L LD + C +++ L G LT+L+ RR
Sbjct: 143 SLRELDLSLCEGPITAVGIAHLLALP-LDRLDVSGC-ELNADSARLLAGHPTLTTLNLRR 200
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N AI G+ AFA L L++ G+ L + +L+I N I D +
Sbjct: 201 N-AIGDAGVAAFARNKKLTTLNVSSNGIGPVGVRALAANTTITTLDIS-NNEIGDEGARA 258
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------- 224
L+ T L L S + G L LT L+L + A +++L
Sbjct: 259 LASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHA 318
Query: 225 -------------SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+A +L LNL+ + + G F T L LNL + GI E +
Sbjct: 319 CGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGI--ERVPE 376
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L+LS+ Q+G + + L+ L ++N+ I D LAG ++L +LN+
Sbjct: 377 WADNGKLTTLDLSNNQIGDTAAQVLAASHTLTTLNVGSNRIGDTGACALAGNTTLTTLNV 436
Query: 332 DARQITDTGLAALTSLTGLTHLD 354
+I G+ AL + T L L+
Sbjct: 437 SLNRIGKAGMLALAANTTLEKLE 459
>gi|29823175|emb|CAD15502.2| probable lrr-gala family type III effector protein (gala 4)
[Ralstonia solanacearum GMI1000]
Length = 462
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 155 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 213
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L SLN+ GI D G L L L++SD ++G +G R L+G L ++
Sbjct: 214 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 273
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
GI R LA +L L+L +I G AL + LT L++ G + +GAA L
Sbjct: 274 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 333
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L+I G+ +AG + + ++L L+++ N + + ++ T L +L++ +
Sbjct: 334 SAALTELDIGNNGIGNAGARALGANATLVKLSVANN-GIEEAGARALAASTTLTALDIGS 392
Query: 431 SRITSAGLRHL 441
+RI AG + L
Sbjct: 393 NRIGDAGAQAL 403
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+L LDL RC G + G+ +L E L++ C +S + L+ L L
Sbjct: 143 SLTALDLSRCE----GPITSAGIARLLALPLERLDVSGCGLDAES-ARLLASHPTLTVLN 197
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G A L KLT LN+ ++ A +L A L L+++ ++ D G
Sbjct: 198 ISRNAIGDDGAAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGAR 257
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ L L+ CGIG EG L L L+L ++G G L+ L S+N
Sbjct: 258 ALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLN 317
Query: 307 ------------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ GI + R L ++L L++ I + G
Sbjct: 318 VCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGAR 377
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
AL + T LT LD+ RI D+GA L L +L+ + D G + D + L LN
Sbjct: 378 ALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLN 437
Query: 403 LSQN 406
+ N
Sbjct: 438 VGAN 441
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 5/248 (2%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 216 KLTSLNVG-RNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 274
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L+A +L L+L ++ G E + L SLN+ CG
Sbjct: 275 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNV--CGNALGSAGAALLA 332
Query: 276 CNLKCLEL--SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
+ EL + +G++G R L L ++++ GI + R LA ++L +L++ +
Sbjct: 333 ASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGS 392
Query: 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 393
+I D G AL + L LD I D GA L + L +L + + +AG++ ++
Sbjct: 393 NRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALE 452
Query: 394 DLSSLTLL 401
++L +L
Sbjct: 453 ASTTLAVL 460
>gi|354476331|ref|XP_003500378.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cricetulus griseus]
Length = 340
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 146/292 (50%), Gaps = 37/292 (12%)
Query: 189 CSKVTDSGIA----YLKGLQKLTLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LS 241
C ++TDS + YLKGL+ +L L GC L L L LNL C+ LS
Sbjct: 70 CKQITDSSLGRIAQYLKGLE---VLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 126
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLT 300
D G + +T + EG + L L C +L+D L+H+S GLT
Sbjct: 127 DVGIGHLAGMTRSAA----------EGCLGLEQLTLQDCQKLTDLS-----LKHISRGLT 171
Query: 301 NLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDL-F 356
L +NLSF G ISD L L+ + SL+ D I+DTG+ A+ SL L+ LD+ F
Sbjct: 172 GLRLLNLSFCGGISDAGLLHLSHMGSLRLPTCD--NISDTGIMHLAMGSLR-LSGLDVSF 228
Query: 357 GARITDSGAAYL-RNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL 414
++ D AY+ + L+SL +C ++D G+ + ++ + L LN+ Q +TDK L
Sbjct: 229 CDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGL 288
Query: 415 ELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
ELI+ L+ L +++ +RIT GL + L L+ L L ++T ++ R
Sbjct: 289 ELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 340
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 141/309 (45%), Gaps = 58/309 (18%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA L ++L G S++T++GL+ + L+SL+ C +SD G+ H
Sbjct: 73 ITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGH 132
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL------KGLM 155
L G++ A G + L +L L+ C + L +L +GL
Sbjct: 133 LAGMTR-----------------SAAEGCLGLEQLTLQDCQK----LTDLSLKHISRGLT 171
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-GLQKLTLLNLEGC 214
L LN+ +C I+D+ + LS + +L+ +C ++D+GI +L G +L+ L++ C
Sbjct: 172 GLRLLNLSFCGGISDAGLLHLSHMGSLR--LPTCDNISDTGIMHLAMGSLRLSGLDVSFC 229
Query: 215 -PVTAACLDSLS-ALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLV 270
V L ++ L L L+L C +SDDG + R + L +LN+ C I D+GL
Sbjct: 230 DKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLE 289
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+ HLS LT ++ T I+ L ++ L LK LN
Sbjct: 290 LIA--------------------EHLSQLTGIDLYG--CTRITKRGLERITQLPCLKVLN 327
Query: 331 LDARQITDT 339
L Q+TD+
Sbjct: 328 LGLWQMTDS 336
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 44/253 (17%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LKSLQIS-CSKVTDSGIAYL-KG 202
GL +L+SLN++ C ++D + L+G+T L+ L + C K+TD + ++ +G
Sbjct: 110 GLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRG 169
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
L L LLNL C +SD G L+++ SL L +C
Sbjct: 170 LTGLRLLNLSFCG-----------------------GISDAG---LLHLSHMGSLRLPTC 203
Query: 263 -GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLESINLSFTGISDGSL- 317
I D G+++L G L L++S +VG L +++ GL L+S++L ISD +
Sbjct: 204 DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGIN 263
Query: 318 RKLAGLSSLKSLNL-DARQITDTGLAALTS-LTGLTHLDLFG-ARITDSGAAYLRNFKNL 374
R + + L++LN+ +ITD GL + L+ LT +DL+G RIT G + L
Sbjct: 264 RMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERITQLPCL 323
Query: 375 RSLEICGGGLTDA 387
+ L + +TD+
Sbjct: 324 KVLNLGLWQMTDS 336
>gi|17546519|ref|NP_519921.1| GALA protein [Ralstonia solanacearum GMI1000]
Length = 401
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+T +GIA L L L L++ GC + A L++ +L LN++R + DDG +
Sbjct: 94 PITSAGIARLLAL-PLERLDVSGCGLDAESARLLASHPTLTVLNISRNAIGDDGAAALAA 152
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L SLN+ GI D G L L L++SD ++G +G R L+G L ++
Sbjct: 153 NPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDC 212
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
GI R LA +L L+L +I G AL + LT L++ G + +GAA L
Sbjct: 213 GIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAA 272
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L L+I G+ +AG + + ++L L+++ N + + ++ T L +L++ +
Sbjct: 273 SAALTELDIGNNGIGNAGARALGANATLVKLSVANN-GIEEAGARALAASTTLTALDIGS 331
Query: 431 SRITSAGLRHL 441
+RI AG + L
Sbjct: 332 NRIGDAGAQAL 342
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKL-----ESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
+L LDL RC G + G+ +L E L++ C +S + L+ L L
Sbjct: 82 SLTALDLSRCE----GPITSAGIARLLALPLERLDVSGCGLDAES-ARLLASHPTLTVLN 136
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
IS + + D G A L KLT LN+ ++ A +L A L L+++ ++ D G
Sbjct: 137 ISRNAIGDDGAAALAANPKLTSLNVGRNGISDAGARALVACAGLTKLDISDNRIGDAGAR 196
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+ L L+ CGIG EG L L L+L ++G G L+ L S+N
Sbjct: 197 ALAGSAKLNKLDAGDCGIGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLN 256
Query: 307 ------------------------LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
+ GI + R L ++L L++ I + G
Sbjct: 257 VCGNALGSAGAALLAASAALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGAR 316
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
AL + T LT LD+ RI D+GA L L +L+ + D G + D + L LN
Sbjct: 317 ALAASTTLTALDIGSNRIGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLN 376
Query: 403 LSQN 406
+ N
Sbjct: 377 VGAN 380
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 1/246 (0%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
KL SLN+ N I+D+ + L L L IS +++ D+G L G KL L+ C
Sbjct: 155 KLTSLNVGR-NGISDAGARALVACAGLTKLDISDNRIGDAGARALAGSAKLNKLDAGDCG 213
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+ +L+A +L L+L ++ G E + L SLN+ +G G L
Sbjct: 214 IGPEGARALAASQTLTRLDLRYNEIGVGGAEALAANPRLTSLNVCGNALGSAGAALLAAS 273
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L++ + +G++G R L L ++++ GI + R LA ++L +L++ + +
Sbjct: 274 AALTELDIGNNGIGNAGARALGANATLVKLSVANNGIEEAGARALAASTTLTALDIGSNR 333
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D G AL + L LD I D GA L + L +L + + +AG++ ++
Sbjct: 334 IGDAGAQALAANDTLVTLDASANWIGDPGALALADNTRLATLNVGANRIGEAGMRALEAS 393
Query: 396 SSLTLL 401
++L +L
Sbjct: 394 TTLAVL 399
>gi|290980964|ref|XP_002673201.1| predicted protein [Naegleria gruberi]
gi|284086783|gb|EFC40457.1| predicted protein [Naegleria gruberi]
Length = 336
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 2/236 (0%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
N I++ + +SG+ LKSL I +++ Y+ L+KL L++ L +
Sbjct: 74 NGISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSLSV--SVRNNEVLTLIG 131
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+ +L L ++R + DG + SR+ L SL++ + + EG ++ + L L +++
Sbjct: 132 GMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELVITN 191
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+G G ++S L L + + F I D + ++GL L LN+ +I G ++
Sbjct: 192 NNIGIMGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGAKSIG 251
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
L LTHL I GA + +NL L+I G + D G I +L+ LT L
Sbjct: 252 ELRNLTHLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTL 307
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 4/229 (1%)
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ + L + L L+ GI + G++ ++G+ LK L++ + ++ ++++ L L+S+
Sbjct: 58 KPLTMLKQVTDLVLNENGISELGVIYISGMIQLKSLDIRNNEINVESAKYITQLRKLQSL 117
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
++S ++ L + G+ +L L +D I G ++ + LT L + + GA
Sbjct: 118 SVSVR--NNEVLTLIGGMKNLTRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGA 175
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+ + K L L I + G +I +L LT L + NC + D+ + ISGL LV
Sbjct: 176 KLISSMKKLTELVITNNNIGIMGTFYISELKELTKLCIGFNC-IGDEGAKHISGLKKLVD 234
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL-QSRDLPNL 473
LNV+ + I AG + + L+NL L+ + A K + Q R+L L
Sbjct: 235 LNVTWNEIGLAGAKSIGELRNLTHLSAGENDIPAEGAKAISQLRNLTYL 283
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 3/257 (1%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
G++ + G+++L+SL+I+ N I K ++ L L+SL +S + + + G++ L
Sbjct: 80 GVIYISGMIQLKSLDIR-NNEINVESAKYITQLRKLQSLSVSVR--NNEVLTLIGGMKNL 136
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
T L ++ + +S + L L+++ L +G + S + L L + + IG
Sbjct: 137 TRLRIDRNNIGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELVITNNNIGI 196
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
G ++ L L L + +G G +H+SGL L +N+++ I + + L +L
Sbjct: 197 MGTFYISELKELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGAKSIGELRNL 256
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
L+ I G A++ L LT+LD+ G I D G + L +L I L++
Sbjct: 257 THLSAGENDIPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTLFIGVYSLSN 316
Query: 387 AGVKHIKDLSSLTLLNL 403
+ +K + L + +L
Sbjct: 317 CSIDQLKKMKQLRVSDL 333
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+D+ +++ ++ LQSL + ++ L + G+ NLT L RNN
Sbjct: 90 LKSLDIRNNEINVESAKYITQLRKLQSLSVSVR---NNEVLTLIGGMKNLTRLRIDRNN- 145
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI---------------- 162
I G K + + L L + + + G + + KL L I
Sbjct: 146 IGHDGAKIISRMKQLTSLHISNNSLLSEGAKLISSMKKLTELVITNNNIGIMGTFYISEL 205
Query: 163 ----KWC---NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
K C NCI D K +SGL L L ++ +++ +G + L+ LT L+
Sbjct: 206 KELTKLCIGFNCIGDEGAKHISGLKKLVDLNVTWNEIGLAGAKSIGELRNLTHLSAGEND 265
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
+ A ++S L +L YL++ + D+G S LT L +L
Sbjct: 266 IPAEGAKAISQLRNLTYLDIVGNPIGDEGGLAISELTKLTTL 307
>gi|21757336|dbj|BAC05092.1| unnamed protein product [Homo sapiens]
gi|119603710|gb|EAW83304.1| F-box and leucine-rich repeat protein 13, isoform CRA_g [Homo
sapiens]
Length = 735
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 196/428 (45%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 463
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 464 IGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 524 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 583
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 584 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCV 643
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 644 LLTDQILE 651
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 29/244 (11%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + CL LS+T + +
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLS---- 396
S TG+ HL + +TD+ L +E C L G HI D +
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKAL--------VEKCSRITSLVFTGAPHISDCTFRAL 397
Query: 397 ---SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 451
L + N +TD + + I L + +++ + IT + LR L PLK L L
Sbjct: 398 SACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLN 457
Query: 452 LESC 455
L +C
Sbjct: 458 LANC 461
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS------------------ 249
LN GC + S+S +L LN++ C +D+ S
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 250 --------RLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 297 ----SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+G+ +L +IN ++D ++ L S + SL A I+D AL++ L
Sbjct: 346 ANSCTGIMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA-CKL 402
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 403 RKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 408 NLTDKTL-ELISGLTGL--VSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA
Sbjct: 463 RIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 522
Query: 462 I 462
I
Sbjct: 523 I 523
>gi|290971190|ref|XP_002668408.1| predicted protein [Naegleria gruberi]
gi|284081802|gb|EFC35664.1| predicted protein [Naegleria gruberi]
Length = 286
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L++S +G G +++S + L S+N+ + ISD + ++ + L LN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ +I D G ++ + LT L++ I D GA ++ K L SL + ++ G K+
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
I ++ L LLN+ N ++D+ + IS + L SL+ +N
Sbjct: 249 ISEMKQLILLNIGSN-RISDEGAKYISEMKQLTSLHTTN 286
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 91/171 (53%), Gaps = 2/171 (1%)
Query: 281 LELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+E S +GS ++ +S + L S+++S I + ++ + L SLN+ QI+D
Sbjct: 113 VEFSGYLLGSRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDK 172
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
G ++ + L L++ RI D GA Y+ K L SL + + D G K I ++ LT
Sbjct: 173 GAKYISEMKQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLT 232
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
LN+ +N ++ + + IS + L+ LN+ ++RI+ G +++ +K L SL
Sbjct: 233 SLNVYKN-RISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S + L SL++ IG EG ++ + L L + Q+ G +++S + L +N+
Sbjct: 130 SEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNIG 189
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I D + ++ + L SLN+ +I D G ++ + LT L+++ RI+ GA Y+
Sbjct: 190 SNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKYI 249
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
K L L I ++D G K+I ++ LT L+
Sbjct: 250 SEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 78/154 (50%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L L+++ + +G + S + L SLN+ I D+G ++ + L L +
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++G G +++S + L S+N+S I D + ++ + L SLN+ +I+ G
Sbjct: 189 GSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAKY 248
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
++ + L L++ RI+D GA Y+ K L SL
Sbjct: 249 ISEMKQLILLNIGSNRISDEGAKYISEMKQLTSL 282
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
++ + LT LD+ I GA Y+ K L SL I ++D G K+I ++ L LLN+
Sbjct: 129 ISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLILLNI 188
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
N + D+ + IS + L SLNVSN+ I G + + +K L SL + +++ K
Sbjct: 189 GSN-RIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEGAK 247
Query: 464 RL 465
+
Sbjct: 248 YI 249
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K +S + L SL IS + + G Y+ +++LT LN+ ++ +S + L
Sbjct: 126 VKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNIYYNQISDKGAKYISEMKQLIL 185
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
LN+ ++ D+G + S + L SLN+ + I DEG ++ + L L + ++ G
Sbjct: 186 LNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNRISVEG 245
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+++S + L +N+ ISD + ++ + L SL+
Sbjct: 246 AKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLH 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 1/166 (0%)
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179
+ + +K + + L LD+ + G + + +L SLNI + N I+D K +S +
Sbjct: 122 SRERVKFISEMKQLTSLDISHNLIGYEGAKYISEMKQLTSLNI-YYNQISDKGAKYISEM 180
Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
L L I +++ D G Y+ +++LT LN+ + +S + L LN+ + +
Sbjct: 181 KQLILLNIGSNRIGDEGAKYISEMKQLTSLNVSNNEIRDEGAKFISEMKQLTSLNVYKNR 240
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+S +G + S + L LN+ S I DEG ++ + L L ++
Sbjct: 241 ISVEGAKYISEMKQLILLNIGSNRISDEGAKYISEMKQLTSLHTTN 286
>gi|357134265|ref|XP_003568738.1| PREDICTED: uncharacterized protein LOC100844673 [Brachypodium
distachyon]
Length = 547
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 179/418 (42%), Gaps = 57/418 (13%)
Query: 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS------- 54
LP ++ + L R L+ LE FR +++++ L V+ +W+ + S
Sbjct: 44 LPGQLADALLQRLAARRLLSPSLLEVFRH-SVEEIDLSGNIAVDAEWLAYLGSFRYLRVL 102
Query: 55 --------QGSSLLSV-DLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL 105
S++ ++ DL G +TD L L+ + L+ LD + +I++ G L+
Sbjct: 103 KLADCKNVNNSAVWALSDLGGIHMTDKTLRSLQVLTRLEHLDI-WGSEITNEGASVLKAF 161
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-----GLVNLKGLMKLESL 160
+ L+ L+ ++ + L NL L++ CT IH VN+ LE
Sbjct: 162 TRLSFLN------VSWTHVTRLPPLPNLQHLNMSNCT-IHSIRDGDSEVNVP----LEKF 210
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ C + + S + L + S + S + + ++ + L+L +T A
Sbjct: 211 TV--CAASFGNIFEVFSSIQGSSLLYLDMSGCSLSNLHIFEKMKHIEHLDLSFSRITDAA 268
Query: 221 LDSLSALGSLFYLNLNRCQLSDDG------CEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ ++ +G +NL L + G C + NL SL+L I D L ++
Sbjct: 269 IQHVANIG----MNLRHLSLKNTGITSQAPCILAGTVPNLSSLSLAYTEIDDSALAYISM 324
Query: 275 LCNLKCLELSDTQVGS-----------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+ +L+ ++LS T + + L L LES+NL T +SD + LA
Sbjct: 325 MPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLEDTALSDEVIPPLASF 384
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
++K L L + ++D L AL+S + LTHL G ++DSG LR L++ G
Sbjct: 385 RAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSG 442
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 177/410 (43%), Gaps = 39/410 (9%)
Query: 58 SLLSVDLSGSDVTDS-GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S+ +DLSG+ D+ L +L L+ L C +++ + L L +
Sbjct: 73 SVEEIDLSGNIAVDAEWLAYLGSFRYLRVLKLADCKNVNNSAVWALSDLGGIH------- 125
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + +++ L L LD+ + G LK +L LN+ W + + + PL
Sbjct: 126 --MTDKTLRSLQVLTRLEHLDIWGSEITNEGASVLKAFTRLSFLNVSWTHV---TRLPPL 180
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSAL--GSLFYL 233
L +L + + D L+K T+ C + + S++ SL YL
Sbjct: 181 PNLQHLNMSNCTIHSIRDGDSEVNVPLEKFTV-----CAASFGNIFEVFSSIQGSSLLYL 235
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSG 292
+++ C LS+ F ++ ++E L+L I D + ++ + NL+ L L +T + S
Sbjct: 236 DMSGCSLSN--LHIFEKMKHIEHLDLSFSRITDAAIQHVANIGMNLRHLSLKNTGITSQA 293
Query: 293 LRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
L+G + NL S++L++T I D +L ++ + SL+ ++L TS+ G T
Sbjct: 294 PCILAGTVPNLSSLSLAYTEIDDSALAYISMMPSLRVIDLSH-----------TSIKGFT 342
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+++ +I L + L SL + L+D + + ++ L L + L+D
Sbjct: 343 CVEVNSEKIPSMPP--LEHLMYLESLNLEDTALSDEVIPPLASFRAIKYLYLKSDF-LSD 399
Query: 412 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
L +S + L L + ++ +GL P LR L L C + D
Sbjct: 400 PALHALSSASNLTHLGFCGNILSDSGLLQFVPPAKLRVLDLSGCWILTGD 449
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 116/256 (45%), Gaps = 29/256 (11%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIAS-QGSSLLSVDLSGSDVTDSGLIHLKDCS 81
V LE F CA G +V +S QGSSLL +D+SG + S L +
Sbjct: 205 VPLEKFTVCAAS---FGNI-------FEVFSSIQGSSLLYLDMSGCSL--SNLHIFEKMK 252
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDLE 139
+++ LD +F +I+D ++H+ + NL LS + N IT+Q AG + NL L L
Sbjct: 253 HIEHLDLSFS-RITDAAIQHVANIGMNLRHLSLK-NTGITSQAPCILAGTVPNLSSLSLA 310
Query: 140 RCTRIHGGLVNLKGLMK------LESLNIKWCNCI-TDSD----MKPLSGLTNLKSLQIS 188
T I + +M L +IK C+ +S+ M PL L L+SL +
Sbjct: 311 -YTEIDDSALAYISMMPSLRVIDLSHTSIKGFTCVEVNSEKIPSMPPLEHLMYLESLNLE 369
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ ++D I L + + L L+ ++ L +LS+ +L +L LSD G +F
Sbjct: 370 DTALSDEVIPPLASFRAIKYLYLKSDFLSDPALHALSSASNLTHLGFCGNILSDSGLLQF 429
Query: 249 SRLTNLESLNLDSCGI 264
L L+L C I
Sbjct: 430 VPPAKLRVLDLSGCWI 445
>gi|320168280|gb|EFW45179.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 769
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 162/401 (40%), Gaps = 31/401 (7%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GLS LT L + N IT AF GL +L +L L + T I
Sbjct: 91 QITGLSANAFAGLSALTLLDLKGNQ-ITTIPENAFTGLASLQQLWLYTNQITSISANA-- 147
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
GL L L + + N + + +GLT L S+Q+ +++T G+ LT L
Sbjct: 148 FAGLSALTQLWM-YSNPLPNITANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLE 206
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L+ +T+ + + L +L YLN+ + ++ F+ L+ L L L I
Sbjct: 207 LQNNAITSISPSAFAGLTALTYLNMVQNHITGISANSFTGLSALNELYLSQNSITVISSN 266
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-----------SFTGISD-GSLR 318
GL L L L Q+ S + L L S+ L +FT + SLR
Sbjct: 267 AFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 319 ------------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
L +L +L+L +IT + A T+L GLT L L+ +IT A
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFAN 386
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
L SL++ G +T I L++L L L++N +T+ + LT L L
Sbjct: 387 AFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNEN-QITNIPANAFASLTALTGL 445
Query: 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +++ S L L L L +T + +
Sbjct: 446 FLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTA 486
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 155/338 (45%), Gaps = 11/338 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
G+ LT L + NNAIT+ AFAGL L L++ + I G N GL L L
Sbjct: 196 FAGMPALTDLELQ-NNAITSISPSAFAGLTALTYLNMVQ-NHITGISANSFTGLSALNEL 253
Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+ N IT +GLT L SL + +++T L L+ L L+ +T+
Sbjct: 254 YLSQ-NSITVISSNAFNGLTALSSLYLPSNQITSISANVFTNLPALSSLRLQSNSITSIS 312
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL---DSCGIGDEGLVNLTGLCN 277
++ + L +L L L ++ F+ L L +L+L + I NL GL +
Sbjct: 313 SNAFTNLPALSSLRLKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTD 372
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LK L ++ + SGL+ L+S++LS I+ +A L++L L L+ QIT
Sbjct: 373 LK---LYANKITTIFANAFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQIT 429
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
+ A SLT LT L L ++ A L L++ +T V L++
Sbjct: 430 NIPANAFASLTALTGLFLQQNQLASIDANAFAGLTALIDLDLREASITVMPVNAFTALTA 489
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
LT L LS N +T + + + LT L L++S ++ITS
Sbjct: 490 LTSLYLSLN-QITTISANVFASLTALNYLDLSANQITS 526
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 123/281 (43%), Gaps = 4/281 (1%)
Query: 198 AYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
A G+ T+ L L P+T+ ++ + L +L L L Q++ F+ L+ L
Sbjct: 49 AVPSGIPATTVTLFLSSNPITSIPANAFATLTALESLRLYNNQITGLSANAFAGLSALTL 108
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L+L I TGL +L+ L L Q+ S +GL+ L + + + + +
Sbjct: 109 LDLKGNQITTIPENAFTGLASLQQLWLYTNQITSISANAFAGLSALTQLWMYSNPLPNIT 168
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
AGL++L S+ LD Q+T A + LT L+L IT + L
Sbjct: 169 ANAFAGLTALNSMQLDRNQLTSIVANAFAGMPALTDLELQNNAITSISPSAFAGLTALTY 228
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + +T LS+L L LSQN ++T + +GLT L SL + +++ITS
Sbjct: 229 LNMVQNHITGISANSFTGLSALNELYLSQN-SITVISSNAFNGLTALSSLYLPSNQITSI 287
Query: 437 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 477
L L SL L+S +T+ +LP L S R
Sbjct: 288 SANVFTNLPALSSLRLQSNSITSISSNAF--TNLPALSSLR 326
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 49/292 (16%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ L+SL + +N IT+ F L L L L+ + L L SL
Sbjct: 268 FNGLTALSSL-YLPSNQITSISANVFTNLPALSSLRLQSNSITSISSNAFTNLPALSSLR 326
Query: 162 IK-----------WCNC-------ITDSDMK--PLSGLTNLK---SLQISCSKVTDSGIA 198
+K + N ++D+++ P++ TNL L++ +K+T
Sbjct: 327 LKSNSITSISSNAFTNLPALSALDLSDNEITVIPVNAFTNLPGLTDLKLYANKITTIFAN 386
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
GL L L+L G +T +++++L +L +L LN Q+++ F+ LT L
Sbjct: 387 AFSGLSVLDSLDLSGNLITVIPANAIASLTALNFLYLNENQITNIPANAFASLTAL---- 442
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
TGL L Q+ S +GLT L ++L I+ +
Sbjct: 443 --------------TGLF------LQQNQLASIDANAFAGLTALIDLDLREASITVMPVN 482
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLR 369
L++L SL L QIT SLT L +LDL +IT +A+ R
Sbjct: 483 AFTALTALTSLYLSLNQITTISANVFASLTALNYLDLSANQITSIEASAFTR 534
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 11/207 (5%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSL-DFN-FCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++DLS +++T +I + +NL L D + +I+ GLS L SL
Sbjct: 345 ALSALDLSDNEIT---VIPVNAFTNLPGLTDLKLYANKITTIFANAFSGLSVLDSLDLS- 400
Query: 116 NNAITAQGMKAFAGL--INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
N IT A A L +N + L+ + T I L L L ++ N + D
Sbjct: 401 GNLITVIPANAIASLTALNFLYLNENQITNIPANA--FASLTALTGLFLQQ-NQLASIDA 457
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
+GLT L L + + +T + L LT L L +T + ++L +L YL
Sbjct: 458 NAFAGLTALIDLDLREASITVMPVNAFTALTALTSLYLSLNQITTISANVFASLTALNYL 517
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLD 260
+L+ Q++ F+RLT L L L+
Sbjct: 518 DLSANQITSIEASAFTRLTALSDLYLN 544
>gi|161333852|ref|NP_659469.3| F-box/LRR-repeat protein 13 isoform 1 [Homo sapiens]
gi|311033450|sp|Q8NEE6.3|FXL13_HUMAN RecName: Full=F-box/LRR-repeat protein 13; AltName: Full=F-box and
leucine-rich repeat protein 13
Length = 735
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 196/428 (45%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 463
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 464 IGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 524 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 583
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 584 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCV 643
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 644 LLTDQILE 651
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 29/244 (11%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + CL LS+T + +
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLS---- 396
S TG+ HL + +TD+ L +E C L G HI D +
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKAL--------VEKCSRITSLVFTGAPHISDCTFRAL 397
Query: 397 ---SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 451
L + N +TD + + I L + +++ + IT + LR L PLK L L
Sbjct: 398 SACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLN 457
Query: 452 LESC 455
L +C
Sbjct: 458 LANC 461
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS------------------ 249
LN GC + S+S +L LN++ C +D+ S
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 250 --------RLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 297 ----SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+G+ +L +IN ++D ++ L S + SL A I+D AL++ L
Sbjct: 346 ANSCTGIMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA-CKL 402
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 403 RKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 408 NLTDKTL-ELISGLTGL--VSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA
Sbjct: 463 RIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 522
Query: 462 I 462
I
Sbjct: 523 I 523
>gi|334145937|ref|YP_004508864.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
gi|333803091|dbj|BAK24298.1| leucine-rich protein [Porphyromonas gingivalis TDC60]
Length = 1384
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 143/477 (29%), Positives = 224/477 (46%), Gaps = 92/477 (19%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FR 114
+SL +DLSG+ + + L L ++L LD +SD + L GL +LTSL+ +
Sbjct: 131 ASLTELDLSGNQI--AKLEGLNALTSLTRLD------LSDNQIAKLEGLDSLTSLTELYL 182
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHG---------------GLVNLKGLMKL 157
N I ++ L +L +LDL + ++ G + L+GL L
Sbjct: 183 SGNQIAK--LEGLDHLTSLTRLDLRGNQIAKLEGLDHLTSLTGLNLSGNQIRKLEGLDSL 240
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
SL + + + ++ L+ LT+L L +S +++ + + L L LT LNL G ++
Sbjct: 241 TSLTELYLSGNQIAKLEGLNALTSLTELYLSGNQI--AKLEGLNALTSLTGLNLSGNQIS 298
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLC 276
L+SL++L SL LNL+ Q++ E + LT+L L+L I EGL +LT L
Sbjct: 299 K--LESLASLTSLTRLNLSDNQIA--KLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLT 354
Query: 277 NLKC-------------------LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L L+LS Q+ S L L+ LT+L ++LS I+ +L
Sbjct: 355 RLDLRGNQIRKLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQIA--TL 410
Query: 318 RKLAGLSSLKSLNLDARQITD-TGLAALTSLTG-------------------LTHLDLFG 357
LA L+SL L+L QI GL ALTSLTG LT LDL G
Sbjct: 411 ESLASLTSLTELDLSDNQIAKLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLTRLDLRG 470
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+I L + +L L++ G + + ++ + L+SLT L+LS N TLE +
Sbjct: 471 NQIRKLEG--LDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDN---QIATLEGL 523
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQSRDL 470
+ LT L L++S+++I A L L L +L L L ++ D+ +LQ D+
Sbjct: 524 NALTSLTRLDLSDNQI--AKLESLASLTSLTRLDLSDNQIAKLEGLKDLTQLQELDV 578
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 138/427 (32%), Positives = 205/427 (48%), Gaps = 59/427 (13%)
Query: 57 SSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--F 113
+SL +DL G+ + GL HL + L +S + L GL +LTSL+ +
Sbjct: 197 TSLTRLDLRGNQIAKLEGLDHLTSLTGLN---------LSGNQIRKLEGLDSLTSLTELY 247
Query: 114 RRNNAITA-QGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGL-------MKLESL--- 160
N I +G+ A L L L + ++ G L +L GL KLESL
Sbjct: 248 LSGNQIAKLEGLNALTSLTELY-LSGNQIAKLEGLNALTSLTGLNLSGNQISKLESLASL 306
Query: 161 -NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT---LLNLEGCPV 216
++ N ++D+ + L GL L SL + + + IA L+GL LT L+L G +
Sbjct: 307 TSLTRLN-LSDNQIAKLEGLNALTSL--TGLDLRGNQIAKLEGLDHLTSLTRLDLRGNQI 363
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
L+ L +L SL L+L+ Q+S E + LT+L L+L I L +L L
Sbjct: 364 RK--LEGLDSLTSLTQLDLSGNQIS--KLESLNALTSLTELDLSDNQIA--TLESLASLT 417
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
+L L+LSD Q+ L L+ LT+L ++L I+ L L L+SL L+L QI
Sbjct: 418 SLTELDLSDNQIAK--LEGLNALTSLTGLDLRGNQIA--KLEGLDHLTSLTRLDLRGNQI 473
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
L L SLT LT LDL G +I S L +L L++ + A ++ + L+
Sbjct: 474 R--KLEGLDSLTSLTQLDLSGNQI--SKLESLNALTSLTELDLSDNQI--ATLEGLNALT 527
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
SLT L+LS N LE ++ LT L L++S+++I A L LK L L+ L
Sbjct: 528 SLTRLDLSDN---QIAKLESLASLTSLTRLDLSDNQI--AKLEGLKDLTQLQEL-----D 577
Query: 457 VTANDIK 463
V+ NDI+
Sbjct: 578 VSGNDIQ 584
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 149/317 (47%), Gaps = 46/317 (14%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ ++ L+ LT+L L +S +++ L L LT L+L G + A L+ L+AL SL
Sbjct: 100 AKLEGLNALTSLTRLDLSYNQI--RKFEGLDHLASLTELDLSGNQI--AKLEGLNALTSL 155
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVG 289
L+L+ Q++ E LT+L L L I EGL +LT L L +L Q+
Sbjct: 156 TRLDLSDNQIA--KLEGLDSLTSLTELYLSGNQIAKLEGLDHLTSLTRL---DLRGNQIA 210
Query: 290 S-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN---LDARQITDTGLAALT 345
GL HL+ LT L +S +RKL GL SL SL L QI L L
Sbjct: 211 KLEGLDHLTSLTGL--------NLSGNQIRKLEGLDSLTSLTELYLSGNQIA--KLEGLN 260
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+LT LT L L G +I L +L L + G + + ++ + L+SLT LNLS
Sbjct: 261 ALTSLTELYLSGNQIAKLEG--LNALTSLTGLNLSGNQI--SKLESLASLTSLTRLNLSD 316
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHL-------------KPLKNLRSLT 451
N LE ++ LT L L++ ++I GL HL + L+ L SLT
Sbjct: 317 N---QIAKLEGLNALTSLTGLDLRGNQIAKLEGLDHLTSLTRLDLRGNQIRKLEGLDSLT 373
Query: 452 -LESCKVTANDIKRLQS 467
L ++ N I +L+S
Sbjct: 374 SLTQLDLSGNQISKLES 390
>gi|83749484|ref|ZP_00946474.1| cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. [Ralstonia solanacearum
UW551]
gi|83723838|gb|EAP71026.1| cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. [Ralstonia solanacearum
UW551]
gi|332322076|gb|AEE41039.1| GALA4 type III effector [Ralstonia solanacearum]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 5/241 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S +T GIA+L L L L++ GC + A L+
Sbjct: 132 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 188
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L LNL R + D G F+R L +LN+ S GIG G+ L + L++S+
Sbjct: 189 GHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVSSNGIGPVGVRALAANTTITTLDISN 248
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G R L+ T L ++ S GI + LA ++L SL+L I G+ AL
Sbjct: 249 NEIGDEGARALASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 308
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L L G + A L L L + + +AG + ++L LNLS
Sbjct: 309 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSN 368
Query: 406 N 406
N
Sbjct: 369 N 369
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 4/284 (1%)
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
+ L+ L++ C DS + L+G L +L + + + D+G+A +KLT LN+
Sbjct: 167 LPLDRLDVSGCELNADS-ARLLAGHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVSSN 225
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
+ + +L+A ++ L+++ ++ D+G + T L L+ CGIG EG L
Sbjct: 226 GIGPVGVRALAANTTITTLDISNNEIGDEGARALASNTALTRLDASDCGIGPEGTQALAT 285
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334
L L+LS + + G+ L T L +++ + LA ++L LNL +
Sbjct: 286 STTLTSLDLSYNAIEAEGVEALGRNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSN 345
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
I + G A + T L L+L I + + N K L +L++ + D + +
Sbjct: 346 AIGNAGARAFGANTTLVELNLSNNGI-ERVPEWADNGK-LTTLDLSNNQIGDTAAQVLAA 403
Query: 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
+LT LN+ N + D ++G T L +LNVS +RI AG+
Sbjct: 404 SHTLTTLNVGSN-RIGDTGACALAGNTTLTTLNVSLNRIGKAGM 446
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 140/316 (44%), Gaps = 18/316 (5%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 133 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 185
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I ++ L+ T + +L
Sbjct: 186 LLAGHPTLTTLNLRRNAIGDAGVAAFARNKKLTTLNVS-SNGIGPVGVRALAANTTITTL 244
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 245 DISNNEIGDEGARALASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 304
Query: 246 EKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E R T L +L+ +CG +G L L L LS +G++G R T L
Sbjct: 305 EALGRNTTLRTLH--ACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLV 362
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NLS GI + + A L +L+L QI DT L + LT L++ RI D+
Sbjct: 363 ELNLSNNGIE--RVPEWADNGKLTTLDLSNNQIGDTAAQVLAASHTLTTLNVGSNRIGDT 420
Query: 364 GAAYLRNFKNLRSLEI 379
GA L L +L +
Sbjct: 421 GACALAGNTTLTTLNV 436
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 136/323 (42%), Gaps = 32/323 (9%)
Query: 58 SLLSVDLS--GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SL +DLS +T G+ HL L LD + C +++ L G LT+L+ RR
Sbjct: 143 SLRELDLSLCEGPITAVGIAHLLALP-LDRLDVSGC-ELNADSARLLAGHPTLTTLNLRR 200
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N AI G+ AFA L L++ G+ L + +L+I N I D +
Sbjct: 201 N-AIGDAGVAAFARNKKLTTLNVSSNGIGPVGVRALAANTTITTLDIS-NNEIGDEGARA 258
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL----------- 224
L+ T L L S + G L LT L+L + A +++L
Sbjct: 259 LASNTALTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHA 318
Query: 225 -------------SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271
+A +L LNL+ + + G F T L LNL + GI E +
Sbjct: 319 CGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGI--ERVPE 376
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L L+LS+ Q+G + + L+ L ++N+ I D LAG ++L +LN+
Sbjct: 377 WADNGKLTTLDLSNNQIGDTAAQVLAASHTLTTLNVGSNRIGDTGACALAGNTTLTTLNV 436
Query: 332 DARQITDTGLAALTSLTGLTHLD 354
+I G+ AL + T L L+
Sbjct: 437 SLNRIGKAGMLALATNTTLEKLE 459
>gi|85679222|gb|ABC72027.1| InlA [Listeria monocytogenes]
Length = 791
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 176/365 (48%), Gaps = 65/365 (17%)
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
+ LKD + L + N QI+D + L L+NLT L+ NN IT + A L NL
Sbjct: 112 ITPLKDLTKLVDIVMNNN-QITD--ISPLANLTNLTGLTLF-NNQIT--DIDALKNLTNL 165
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+L++ T + L GL L+ L+ N +TD +KPL+ LT L+ L IS +KV+
Sbjct: 166 NRLEITGNTI--SDISVLSGLTSLQQLSF--GNQVTD--LKPLANLTTLERLDISSNKVS 219
Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN 253
D + L KLT NLE T + ++ LG LTN
Sbjct: 220 DISV-----LAKLT--NLERLIATNNQISDITPLG---------------------ILTN 251
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L+L+ + D G L L NL L++++ Q+ S L LSGLT L + L + IS
Sbjct: 252 LDELSLNGNQLKDIG--TLASLTNLTSLDVANNQI--SNLAPLSGLTKLTELELGYNQIS 307
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
+ + + GL++L SL L Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 308 N--ISPIEGLTALTSLELHENQLED--ISPISNLKNLTYLALYFNNISD--ISPVSSLTK 361
Query: 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
L+ L ++D V + +L+++ L+ + N IS LT L +L +RI
Sbjct: 362 LQRLFFYNNKVSD--VSSLANLTNINWLSAAHNQ---------ISDLTPLANL----TRI 406
Query: 434 TSAGL 438
+ GL
Sbjct: 407 SELGL 411
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 151/341 (44%), Gaps = 84/341 (24%)
Query: 121 AQGMKAFAGLINLV----KLDLERCTRIHGGLVNLKGLMKLESLN----IKW-CNCITDS 171
A+ MK G N+ + DL++ T + + +K + LE LN I + N +TD
Sbjct: 53 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFGFNQLTD- 111
Query: 172 DMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ PL LT L + ++ +++TD S +A L L LTL N
Sbjct: 112 -ITPLKDLTKLVDIVMNNNQITDISPLANLTNLTGLTLFN-------------------- 150
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
Q++D + LTNL L + I D + L+GL +L+ L + QV
Sbjct: 151 -------NQITD--IDALKNLTNLNRLEITGNTISDISV--LSGLTSLQQLSFGN-QV-- 196
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ L+ L+ LT LE +++S +SD S+ LA L++L+ L QI+D + L LT L
Sbjct: 197 TDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLERLIATNNQISD--ITPLGILTNL 252
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
L L G ++ D G L + NL SL++ I +L+ L
Sbjct: 253 DELSLNGNQLKDIGT--LASLTNLTSLDVANN--------QISNLAPL------------ 290
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
SGLT L L + ++I+ ++ P++ L +LT
Sbjct: 291 -------SGLTKLTELELGYNQIS-----NISPIEGLTALT 319
>gi|34785062|gb|AAH20572.2| FBXL13 protein, partial [Homo sapiens]
Length = 569
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 196/428 (45%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 81 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 140
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 141 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 200
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 201 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 260
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 261 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 297
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 298 IGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 357
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 358 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 417
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 418 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCV 477
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 478 LLTDQILE 485
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 30/266 (11%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + CL LS+T + +
Sbjct: 60 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 119
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 120 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 179
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLS---- 396
S TG+ HL + +TD+ L +E C L G HI D +
Sbjct: 180 ANSCTGIMHLTINDMPTLTDNCVKAL--------VEKCSRITSLVFTGAPHISDCTFRAL 231
Query: 397 ---SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 451
L + N +TD + + I L + +++ + IT + LR L PLK L L
Sbjct: 232 SACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLN 291
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
L +C V D+ Q D P + R
Sbjct: 292 LANC-VRIGDMGLKQFLDGPASMRIR 316
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 365 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 413
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 414 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 460
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 461 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 502
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD--------GCEKF------------ 248
LN GC + S+S +L LN++ C D GC
Sbjct: 60 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 119
Query: 249 -------SRLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 120 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 179
Query: 297 S----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
+ G+ +L +IN ++D ++ L S + SL A I+D AL++ L
Sbjct: 180 ANSCTGIMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA-CKL 236
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 237 RKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 296
Query: 408 NLTDKTL-ELISGLTGL--VSLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA
Sbjct: 297 RIGDMGLKQFLDGPASMRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 356
Query: 462 I 462
I
Sbjct: 357 I 357
>gi|343421641|emb|CCD18751.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 518
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 150/337 (44%), Gaps = 18/337 (5%)
Query: 39 GQYPGVNDKWMDVIASQGS--SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
G +PGV +A+ GS L ++L + VTD L L L L C +++D
Sbjct: 188 GSFPGVRG-----LAALGSLPRLRELNLKHTAVTDDCLKTLSASKTLVRLFLVDCRRLTD 242
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
+ L +S+L + + IT +GM F L L L L L L
Sbjct: 243 --VTPLVKISSLQVVDLSDCSGIT-KGMGGFGTLSGLYALSLTGTALTDEQLQELCASQS 299
Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
LESL+IK C +TD + L +T L+ L +S G L++L L + V
Sbjct: 300 LESLSIKRCKLLTDVGV--LGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTCV 357
Query: 217 TAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
T CL +S L L++ C+ L+D C S++ LE LN++ C ++GL L GL
Sbjct: 358 TNECLCEISKCPQLVKLSVAGCKKLTDISC--LSQVHTLEDLNVNMCEHIEDGLGVLGGL 415
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDAR 334
L+ L +S T VG+ LR + LE L I+D S LA SL LNLD
Sbjct: 416 EELRTLRMSFTAVGNDELRLVCKSKTLERSELEGCERITDVS--ALAVAQSLMFLNLDRC 473
Query: 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
Q TG+ L L L + L G +T+ L+ +
Sbjct: 474 QKVVTGVGELGKLPALRVVSLQGVSVTEDDMKSLKMY 510
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 163/362 (45%), Gaps = 35/362 (9%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+S+L ++ +AI G F + L L L R L +L L LN+
Sbjct: 108 MSSLEEVALHNASAIVHIG--KFGRMPCLRVLTLHRVGVTDDFLCSLTTSGSLTHLNLTE 165
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C+ +TD ++PL+ + L+ + +S S G+A L L +L LNL+ VT CL +L
Sbjct: 166 CSRLTD--VEPLASIKTLEQVNLSGSFPGVRGLAALGSLPRLRELNLKHTAVTDDCLKTL 223
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
SA +L L L C+ RLT+ + L + +L+ ++LS
Sbjct: 224 SASKTLVRLFLVDCR----------RLTD---------------VTPLVKISSLQVVDLS 258
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAA 343
D + G+ L+ L +++L+ T ++D L++L SL+SL++ + +TD G+
Sbjct: 259 DCSGITKGMGGFGTLSGLYALSLTGTALTDEQLQELCASQSLESLSIKRCKLLTDVGV-- 316
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
L +T L LD+ G + LRSL + +T+ + I L L++
Sbjct: 317 LGFVTTLRELDMSECDGVARGFCSFSALRELRSLYMTFTCVTNECLCEISKCPQLVKLSV 376
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ LTD + +S + L LNV+ GL L L+ LR+L + S ND
Sbjct: 377 AGCKKLTD--ISCLSQVHTLEDLNVNMCEHIEDGLGVLGGLEELRTLRM-SFTAVGNDEL 433
Query: 464 RL 465
RL
Sbjct: 434 RL 435
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 150/323 (46%), Gaps = 12/323 (3%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL-QISCSKVTDSGIAYLKGLQK 205
GL L L +L LN+K +TD +K LS L L + C ++TD + L +
Sbjct: 195 GLAALGSLPRLRELNLKH-TAVTDDCLKTLSASKTLVRLFLVDCRRLTD--VTPLVKISS 251
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI- 264
L +++L C + L L+ L+L L+D+ ++ +LESL++ C +
Sbjct: 252 LQVVDLSDCSGITKGMGGFGTLSGLYALSLTGTALTDEQLQELCASQSLESLSIKRCKLL 311
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
D G++ L+ L++S+ + G S L L S+ ++FT +++ L +++
Sbjct: 312 TDVGVLGFVT--TLRELDMSECDGVARGFCSFSALRELRSLYMTFTCVTNECLCEISKCP 369
Query: 325 SLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L L++ +++TD ++ L+ + L L++ + G L + LR+L +
Sbjct: 370 QLVKLSVAGCKKLTD--ISCLSQVHTLEDLNVNMCEHIEDGLGVLGGLEELRTLRMSFTA 427
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ + ++ + +L L +TD + ++ L+ LN+ + G+ L
Sbjct: 428 VGNDELRLVCKSKTLERSELEGCERITD--VSALAVAQSLMFLNLDRCQKVVTGVGELGK 485
Query: 444 LKNLRSLTLESCKVTANDIKRLQ 466
L LR ++L+ VT +D+K L+
Sbjct: 486 LPALRVVSLQGVSVTEDDMKSLK 508
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 54/314 (17%)
Query: 168 ITDSDMKPLSGLTNLKSLQ-ISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
++ +D++PL G T + SL+ + C V + ++ + L+ L + +LEG L +L
Sbjct: 27 LSSADLEPLRGCTAVDSLKFLKCRGVMNVEALSTVHSLRDLHV-DLEGELHNLPALQNLP 85
Query: 226 ALGSLFYLNLNR--------CQLSD------------DGCEKFSRLTNLESLNLDSCGIG 265
L LF N N C +S KF R+ L L L G+
Sbjct: 86 YLKRLFIDNENLHDCDVLPLCDMSSLEEVALHNASAIVHIGKFGRMPCLRVLTLHRVGVT 145
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS--FTGISDGSLRKLAGL 323
D+ L +LT +L L L++ + + L+ + LE +NLS F G+ L L L
Sbjct: 146 DDFLCSLTTSGSLTHLNLTECS-RLTDVEPLASIKTLEQVNLSGSFPGVR--GLAALGSL 202
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L+ LNL +TD L L++ L L L R
Sbjct: 203 PRLRELNLKHTAVTDDCLKTLSASKTLVRLFLVDCR-----------------------R 239
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
LTD V + +SSL +++LS +C+ K + L+GL +L+++ + +T L+ L
Sbjct: 240 LTD--VTPLVKISSLQVVDLS-DCSGITKGMGGFGTLSGLYALSLTGTALTDEQLQELCA 296
Query: 444 LKNLRSLTLESCKV 457
++L SL+++ CK+
Sbjct: 297 SQSLESLSIKRCKL 310
>gi|242057027|ref|XP_002457659.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
gi|241929634|gb|EES02779.1| hypothetical protein SORBIDRAFT_03g011312 [Sorghum bicolor]
Length = 81
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
L+K++GLSS+K LNLD RQIT+TGLA+L SLTGLTHLDLFGARI DSG R
Sbjct: 29 LKKISGLSSMKPLNLDNRQITNTGLASLASLTGLTHLDLFGARIIDSGMNCFR 81
>gi|300868028|ref|ZP_07112666.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
gi|300333948|emb|CBN57844.1| Small GTP-binding protein (fragment) [Oscillatoria sp. PCC 6506]
Length = 376
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 163/317 (51%), Gaps = 28/317 (8%)
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184
+A A L L +LDL+ C ++ + L +L+ LN+ N +T+ + ++ L+ L++
Sbjct: 37 EAIATLTQLQRLDLD-CNQLTKVPEAIASLSQLQILNLS-NNKLTEVP-EAIASLSQLQT 93
Query: 185 LQISCSKVTD--SGIAYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
L + +K+T+ IA L LQKL L N L P +++++L L LNLN QL
Sbjct: 94 LNLIYNKLTEVPEAIATLTQLQKLYLSNNQLTQVP------EAIASLSQLQTLNLNFNQL 147
Query: 241 SDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300
++ E + L+ L LNL S E + L L+ L L++ Q+ ++ LT
Sbjct: 148 TE-VPEAIASLSQLRRLNL-SYNQLTEVPETIASLTQLEWLYLNNNQLRKVP-EAIASLT 204
Query: 301 NLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L+ ++LS T + + +A LS L+SLNL Q+T+ A+ SLT L L L G
Sbjct: 205 QLQRLSLSDNELTAVPEA----IASLSQLRSLNLSNNQLTELP-EAIASLTQLQELYLVG 259
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
++T+ A + + L+ L + G LT A + I L+ L L+LS N LT E I
Sbjct: 260 NQLTELPEA-IASLTQLQELYLVGNELT-AVPEAIASLTQLQRLSLSDN-ELT-AVPEAI 315
Query: 418 SGLTGLVSLNVSNSRIT 434
+ LT L L++S +++T
Sbjct: 316 ASLTHLQGLDLSYNQLT 332
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 44/274 (16%)
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
K CI + + G T L + ++V + IA L LQ+L L C +
Sbjct: 9 KAEQCIEKAQQE---GATKLDLGYMELTEVPE-AIATLTQLQRLDL----DCNQLTKVPE 60
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKC 280
++++L L LNL+ +L++ E + L+ L++LNL + + E + LT L+
Sbjct: 61 AIASLSQLQILNLSNNKLTE-VPEAIASLSQLQTLNLIYNKLTEVPEAIATLT---QLQK 116
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340
L LS+ Q+ ++ L+ L+++NL+F +++ +A LS L+ LNL Q+T+
Sbjct: 117 LYLSNNQLTQVP-EAIASLSQLQTLNLNFNQLTEVP-EAIASLSQLRRLNLSYNQLTEVP 174
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
++ LT L+ YL N LR + + I L+ L
Sbjct: 175 ----ETIASLTQLEWL----------YLNN-NQLRKVP-----------EAIASLTQLQR 208
Query: 401 LNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434
L+LS N LT E I+ L+ L SLN+SN+++T
Sbjct: 209 LSLSDN-ELT-AVPEAIASLSQLRSLNLSNNQLT 240
>gi|290974240|ref|XP_002669854.1| predicted protein [Naegleria gruberi]
gi|284083406|gb|EFC37110.1| predicted protein [Naegleria gruberi]
Length = 357
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 22/238 (9%)
Query: 189 CSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTA--ACLDSLSALG------------- 228
C + + YL L++L L+ LE V A L+SLS +G
Sbjct: 89 CPYSFEEFVKYLDECQFDSLKRLNLIGLEVSNVVARFGSLESLSLIGMGAEIGNSIGNLS 148
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
L YLNLN ++ + C+ + +++LNL IG+E + LT L NL L L D +
Sbjct: 149 RLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNI 208
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
G+ HLS + L +N+S I D + L +L S L A + + +T+L
Sbjct: 209 SEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTS--LKAASCSVESIKNITNLI 266
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L+L I + G + NL++L + V+++ LSS+ +L+L N
Sbjct: 267 KLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQYLTKLSSMEVLDLRDN 324
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
+K+L +S +K+ + YL L+ LT+L LE C ++ ++ LS + +L LN+++ ++
Sbjct: 174 IKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHLSQIETLTILNVSKNRIE 233
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
DDG +L NL SL SC + E + N+T L L L L + + G++ + LTN
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQNSIDNEGVKIIGELTN 291
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L+++ L +++ L LSS++ L+L
Sbjct: 292 LKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
++ +L+ LT+L+L + +T Y++ + +++L + + + ++ L +LT+L
Sbjct: 143 SIGNLSRLTYLNLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILR 202
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
L ++CN+++K +E +S + L LNVS +RI G ++ LKNL SL SC V +
Sbjct: 203 L-EDCNISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLKAASCSVES 258
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-------------GLTNLESI 305
LD C +NL GL E+S+ L LS L+ L +
Sbjct: 100 LDECQFDSLKRLNLIGL------EVSNVVARFGSLESLSLIGMGAEIGNSIGNLSRLTYL 153
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365
NL+ + ++ S + + +K+LNL +I + LT L LT L L I++ G
Sbjct: 154 NLNASSVTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGV 213
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 425
+L + L L + + D G +I L +LT L + +C++ ++++ I+ L L S
Sbjct: 214 EHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLK-AASCSV--ESIKNITNLIKLTS 270
Query: 426 LNVSNSRITSAGLRHLKPLKNLRSLTLES 454
LN+ + I + G++ + L NL++LTLE+
Sbjct: 271 LNLGQNSIDNEGVKIIGELTNLKTLTLEN 299
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+++LS + + + ++L NL L C IS+ G+EHL + LT L+ + N I
Sbjct: 176 NLNLSDNKIGNESCLYLTKLKNLTILRLEDC-NISEKGVEHLSQIETLTILNVSK-NRIE 233
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
G L NL L C+ + N+ L+KL SLN+ N I + +K + LT
Sbjct: 234 DDGFVNICKLKNLTSLKAASCSV--ESIKNITNLIKLTSLNLGQ-NSIDNEGVKIIGELT 290
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
NLK+L + + + YL L + +L+L
Sbjct: 291 NLKTLTLENNVFQPEAVQYLTKLSSMEVLDL 321
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L L L ++ CN I++ ++ LS + L L +S +++ D G + L+ LT L
Sbjct: 192 LTKLKNLTILRLEDCN-ISEKGVEHLSQIETLTILNVSKNRIEDDGFVNICKLKNLTSLK 250
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
C V + + +++ L L LNL + + ++G + LTNL++L L++ E +
Sbjct: 251 AASCSVES--IKNITNLIKLTSLNLGQNSIDNEGVKIIGELTNLKTLTLENNVFQPEAVQ 308
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
LT L +++ L+L D + ++ L+ TNL
Sbjct: 309 YLTKLSSMEVLDLRDNNLSFDNVKCLNA-TNL 339
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
L L+L G +++ A F +L SL + G G + G I +LS LT LNL+ + +
Sbjct: 107 SLKRLNLIGLEVSNVVAR----FGSLESLSLIGMG-AEIG-NSIGNLSRLTYLNLNAS-S 159
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+T ++ + I + +LN+S+++I + +L LKNL L LE C ++ ++ L
Sbjct: 160 VTSESCQYIQKCELIKNLNLSDNKIGNESCLYLTKLKNLTILRLEDCNISEKGVEHL 216
>gi|77556733|gb|ABA99529.1| Leucine Rich Repeat family protein, expressed [Oryza sativa
Japonica Group]
Length = 488
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 70/424 (16%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
C L+ L +C +ISD G++ L + L SL I+ +K+
Sbjct: 10 CPRLEKLSLKWCREISDIGIDLLSKKCHELRSLD------------------ISYLKVGN 51
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSG 196
E L ++ L KLE L + C+CI D ++ L G +L+S+ +S C VT G
Sbjct: 52 E-------SLRSISSLEKLEELAMVCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQG 104
Query: 197 IA------------------------YLKGLQKL----TLLNLEGCPVTAACLDSLSALG 228
+A +L L KL T+L L+G V+++ L ++
Sbjct: 105 LASLIDGHNFLQKLNAADSLHEMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCN 164
Query: 229 SLFYLNLNRCQ-LSDDGCEKF-SRLTNLESLNLDSCGI-GDEGLVNLTGLCNL-KCLEL- 283
+L + L++C ++D+G ++ ++L ++L C + + L ++ C + + L L
Sbjct: 165 NLVEIGLSKCNGVTDEGISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLE 224
Query: 284 SDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGL 341
S + + GL ++ NL+ I+L+ G++D +L+ LA S L L L I+D GL
Sbjct: 225 SCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGL 284
Query: 342 AALTSLTG-LTHLDLFGAR-ITDSGAAYLRN-FKNLRSLEICG-GGLTDAGVKHIKDLSS 397
A ++S G L LDL+ ITD G A L N K ++ L +C +TD+G+ H+ L
Sbjct: 285 AFISSSCGKLIELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEE 344
Query: 398 LTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSR-ITSAGLRHLKPLK-NLRSLTLES 454
LT L L +T + ++ G L+ +++ + AGL L NLR LT+
Sbjct: 345 LTNLELRCLVRITGIGISSVAIGCKNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISY 404
Query: 455 CKVT 458
C+VT
Sbjct: 405 CQVT 408
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 127/290 (43%), Gaps = 61/290 (21%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL- 102
+++K ++ IA+ +L +DL+ V D+ L HL CS L L C ISD GL +
Sbjct: 229 ISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFIS 288
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L L R N+IT G+ A A G K++ LN+
Sbjct: 289 SSCGKLIELDLYRCNSITDDGLAALA-----------------------NGCKKIKMLNL 325
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
+CN ITDS + L L L +L++ C ++T GI+ V C
Sbjct: 326 CYCNKITDSGLGHLGSLEELTNLELRCLVRITGIGIS----------------SVAIGC- 368
Query: 222 DSLSALGSLFYLNLNRCQLSDD-GCEKFSRLT-NLESLNLDSCGIGDEGLVNLTGLCNLK 279
+L ++L RC DD G +R NL L + C + GL +L L +L+
Sbjct: 369 ------KNLIEIDLKRCYSVDDAGLWALARYALNLRQLTISYCQVTGLGLCHL--LSSLR 420
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
CL+ D + + HLS ++ +E ++ + G L+KL LS LKS+
Sbjct: 421 CLQ--DVK-----MVHLSWVS-IEGFEMALRA-ACGRLKKLKMLSGLKSV 461
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 164/348 (47%), Gaps = 35/348 (10%)
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
G +LE L++KWC I+D + LS + L+SL IS KV + + + L+KL L +
Sbjct: 9 GCPRLEKLSLKWCREISDIGIDLLSKKCHELRSLDISYLKVGNESLRSISSLEKLEELAM 68
Query: 212 EGCPVTAACLDS--LSALG----SLFYLNLNRCQLSD--------DGCEKFSRLTNLESL 257
V +C+D L LG SL ++++RC DG +L +SL
Sbjct: 69 ----VCCSCIDDDGLELLGKGSNSLQSVDVSRCDHVTSQGLASLIDGHNFLQKLNAADSL 124
Query: 258 NLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDG 315
+ + L NL L + L L L +V SS L + G NL I LS G++D
Sbjct: 125 H----EMRQSFLSNLAKLKDTLTVLRLDGLEVSSSVLLAIGGCNNLVEIGLSKCNGVTDE 180
Query: 316 SLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSLTGLT-HLDLFG-ARITDSGAAYLR-N 370
+ L S L+ ++L +T+ L ++ + HL L + I++ G + +
Sbjct: 181 GISSLVTQCSHLRVIDLTCCNLLTNNALDSIAENCKMVEHLRLESCSSISEKGLEQIATS 240
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG-LVSLNVS 429
NL+ +++ G+ DA ++H+ S L +L L +++DK L IS G L+ L++
Sbjct: 241 CPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSISDKGLAFISSSCGKLIELDLY 300
Query: 430 N-SRITSAGLRHLK-PLKNLRSLTLESC-KVTANDIKRLQS-RDLPNL 473
+ IT GL L K ++ L L C K+T + + L S +L NL
Sbjct: 301 RCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGHLGSLEELTNL 348
>gi|405954703|gb|EKC22070.1| F-box/LRR-repeat protein 14 [Crassostrea gigas]
Length = 403
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 163/301 (54%), Gaps = 26/301 (8%)
Query: 178 GLTNLKSLQIS-CSKVTDS--GIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFY 232
G+ N+++L +S C VTD G A+ + L +T+LNL C +T L ++ L +L
Sbjct: 95 GIPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLGRIAQYLTNLEV 154
Query: 233 LNLNRC-QLSDDGCEKFSR-LTNLESLNLDSC-GIGDEGLVNLTG--------LCNLKCL 281
L L C +++ G + L L++LNL SC I D G+ +L G ++ L
Sbjct: 155 LELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEIENL 214
Query: 282 ELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQIT 337
L D Q + L+HLS GL NL+++NLSF G ++D ++ L+ + +++ +NL + I+
Sbjct: 215 GLQDCQKLTDLSLKHLSCGLVNLKTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNIS 274
Query: 338 DTGLAALTSL-TGLTHLDL-FGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKH-IK 393
D GL L + +T LD+ F ++ D G +L + +LR++ + ++D G+ +
Sbjct: 275 DVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVN 334
Query: 394 DLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLT 451
L +T LN+ Q +TDK L LI+ L L S+++ +RIT+ GL + L+ L +L
Sbjct: 335 TLQDITTLNIGQCVRITDKGLSLIADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLN 394
Query: 452 L 452
L
Sbjct: 395 L 395
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 144/280 (51%), Gaps = 33/280 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEH 101
+ D + IA ++L ++L G S++T++GL+ + L++L+ C ISD G+ H
Sbjct: 137 ITDNSLGRIAQYLTNLEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGH 196
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK----GLMKL 157
L G S A AG + + L L+ C ++ ++LK GL+ L
Sbjct: 197 LAGNSP-----------------NAAAGTLEIENLGLQDCQKLTD--LSLKHLSCGLVNL 237
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYL-KGLQKLTLLNLEGCP 215
++LN+ +C +TDS +K LS + ++ + + SC ++D G+ YL +G ++T L++ C
Sbjct: 238 KTLNLSFCGSVTDSGVKFLSKMQTMREINLRSCDNISDVGLGYLAEGGSRITSLDVSFCD 297
Query: 216 VTA--ACLDSLSALGSLFYLNLNRCQLSDDGCEKF-SRLTNLESLNLDSC-GIGDEGLVN 271
+ L SL ++L+ C +SD+G + + L ++ +LN+ C I D+GL
Sbjct: 298 KVGDEGLVHLAQGLFSLRNISLSACNISDEGLNRLVNTLQDITTLNIGQCVRITDKGLSL 357
Query: 272 LT-GLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSF 309
+ L NL+ ++L T++ + GL + L L ++NL
Sbjct: 358 IADHLKNLQSIDLYGCTRITTVGLERIMQLRGLTTLNLGL 397
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCL---------ELSDTQVGSSGLRHLSGLTN 301
+ N+E+LNL C + + + +L C+ +++D +G R LTN
Sbjct: 96 IPNVETLNLSGCFVVTDHALGHAFSQDLPCMTVLNLSLCKQITDNSLG----RIAQYLTN 151
Query: 302 LESINLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALT-----SLTGLTHL 353
LE + L + I++ L +A GL LK+LNL + R I+D G+ L + G +
Sbjct: 152 LEVLELGGCSNITNTGLLLIAWGLRKLKTLNLRSCRHISDVGIGHLAGNSPNAAAGTLEI 211
Query: 354 DLFG----ARITDSGAAYLR----NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
+ G ++TD +L N K L +L CG +TD+GVK + + ++ +NL
Sbjct: 212 ENLGLQDCQKLTDLSLKHLSCGLVNLKTL-NLSFCGS-VTDSGVKFLSKMQTMREINLRS 269
Query: 406 NCNLTDKTL-ELISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDI 462
N++D L L G + + SL+VS ++ GL HL + L +LR+++L +C ++ +
Sbjct: 270 CDNISDVGLGYLAEGGSRITSLDVSFCDKVGDEGLVHLAQGLFSLRNISLSACNISDEGL 329
Query: 463 KRL 465
RL
Sbjct: 330 NRL 332
>gi|332238073|ref|XP_003268227.1| PREDICTED: F-box/LRR-repeat protein 13 isoform 1 [Nomascus
leucogenys]
Length = 735
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/428 (26%), Positives = 196/428 (45%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCLGVLYLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + A G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H K L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFKALSTCKLRKIRFEGNRRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 463
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 464 IGDMGLKQFLDGPASIRIRELNLSNCVQLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 524 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 583
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHI-KDLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 584 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMETLSAKCHYLHILDISGCV 643
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 644 LLTDQILE 651
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMET 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 30/266 (11%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + L LS+T + +
Sbjct: 226 LNFRACLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCLGVLYLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLS---- 396
S TG+ HL + +TD+ L +E C L G HI D +
Sbjct: 346 ANSCTGIMHLTINDMPTLTDNCVKAL--------VEKCSRITSLVFTGAPHISDCTFKAL 397
Query: 397 ---SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 451
L + N +TD + + I L + +++ + IT + LR L PLK L L
Sbjct: 398 STCKLRKIRFEGNRRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLN 457
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
L +C V D+ Q D P + R
Sbjct: 458 LANC-VRIGDMGLKQFLDGPASIRIR 482
>gi|312372215|gb|EFR20228.1| hypothetical protein AND_20473 [Anopheles darlingi]
Length = 1701
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 178/420 (42%), Gaps = 35/420 (8%)
Query: 57 SSLLSVDLSGSDVTDSGLI--HLKDCSNLQ--SLDFNFCIQISDGGLEHLRGLSNLTSLS 112
SL ++ LSG+ +TD+G+I +KD LQ LD N ++ +G L L L
Sbjct: 313 PSLKTMQLSGNKITDAGMIGRAIKDLHTLQILKLDRNMISKLGEGSFVDLPSLKEL---- 368
Query: 113 FRRNNAITAQGMKAF--AGLINLVKLDLERCTRIH--------GGLVNLKGLMKLESLNI 162
+ +N IT AF + LV L+ R+H G V + L + E +
Sbjct: 369 YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHPESFLQASGSGVEMMHLQQNEIGRV 428
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ + D+ L L+ L +S +K+ L+G L L L + D
Sbjct: 429 EELRSLLDA-------LPMLRFLDLSYNKLEAIPFGALRGHGTLEQLYLNQNRIRMIERD 481
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+ A+ L L L LSD F L L+ +++ L G+ +L+ L+
Sbjct: 482 AFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGIDISYNNFRRMDPSLLVGVPSLRRLD 541
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDT 339
+S + + LE++N+SF T I G+ R L + L + + ++
Sbjct: 542 ISGNALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLHHMFELDAGDNRLQEFI-P 600
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
GL L + A S + L + NLR L++ G LT K L
Sbjct: 601 GLPLAVERINLQR-NKISALPQPSTGSKLWDLPNLRMLDVSGNELTRLPRAVFKPAPQLR 659
Query: 400 LLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
+L+L++N ++ D +L SGLT L LN+ ++R+ + R PL+NLR L L+ ++
Sbjct: 660 VLSLARNQLQSIDDGSL---SGLTRLEVLNLQDNRVLALHERCFNPLENLRELNLQGNRI 716
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 162/402 (40%), Gaps = 65/402 (16%)
Query: 117 NAITAQGMKAFAG--LINLVKLDLERCTRIHGGLVN------------------LKGL-M 155
NA++A AF ++ V + T IH G + GL +
Sbjct: 545 NALSAIEPSAFGNTPMLETVNISFNELTHIHPGTFRDLHHMFELDAGDNRLQEFIPGLPL 604
Query: 156 KLESLNI---KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+E +N+ K S L L NL+ L +S +++T A K +L +L+L
Sbjct: 605 AVERINLQRNKISALPQPSTGSKLWDLPNLRMLDVSGNELTRLPRAVFKPAPQLRVLSLA 664
Query: 213 GCPVTAACLDSLSALGSLFYLNL--NRCQLSDDGCEKFSRLTNLESLNLDSCGI------ 264
+ + SLS L L LNL NR + C F+ L NL LNL I
Sbjct: 665 RNQLQSIDDGSLSGLTRLEVLNLQDNRVLALHERC--FNPLENLRELNLQGNRIEVLVDN 722
Query: 265 -------------GDEGLVNLTGLC-----NLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+V ++ +L+ L+LS Q+ LSGL L S++
Sbjct: 723 LLDGNALLEQFDASRNSIVEISAKAFRNSRSLQTLDLSSNQLHELP-ESLSGLAELRSLD 781
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
LSF +++ S L +L+ L ++ +L +L L + DL +T
Sbjct: 782 LSFNQLTELSPNLLVSWRNLEELKASNNKVNQLHQGSLRNLPLLQYFDLSSNELTQLEHG 841
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
LRN L+ L + +T+ + +DL +L ++L QN NL + +V L
Sbjct: 842 SLRNLPELQELVLADNRITELKERVFEDLPNLQAVHLQQN-NLRYISPYSFYRSPSIVYL 900
Query: 427 NVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
N+S ++ S GLR ++ LE +TAN I+++
Sbjct: 901 NLSANQFRSLDNVGLRSIR--------NLEVLDLTANGIRKI 934
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 52/293 (17%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + + + FA L N+++L L H GL E L+ W N + S ++
Sbjct: 155 NNFLPSLPGRTFAPL-NVLRLMLR-----HNGL---------ERLSSGWLNDVDSSLVEI 199
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+L+S+ + L GL+KL + ++ + L S L L Y+N+
Sbjct: 200 FIVERSLRSIPVDS----------LSGLRKLEAVTIQSEHLKR--LPDFSGLSKLRYINV 247
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
L + F L +LE+ V++TG +L LE +GL
Sbjct: 248 QSGSLIELAPPYFRGLISLET-------------VHVTGSASLTRLE--------AGL-- 284
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHL 353
L+ L L I+LS GIS LR GL SLK++ L +ITD G+ A+ L L L
Sbjct: 285 LNDLPKLTLIDLSENGISWVHLRTFVGLPSLKTMQLSGNKITDAGMIGRAIKDLHTLQIL 344
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
L I+ G + +L+ L + G+T+ SL L++L N
Sbjct: 345 KLDRNMISKLGEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 397
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 139/330 (42%), Gaps = 37/330 (11%)
Query: 114 RRNNAITAQG-----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--- 165
R+ A+T Q + F+GL L ++++ + I +GL+ LE++++
Sbjct: 218 RKLEAVTIQSEHLKRLPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLETVHVTGSASL 277
Query: 166 ---------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKG 202
N I+ ++ GL +LK++Q+S +K+TD+G+ +K
Sbjct: 278 TRLEAGLLNDLPKLTLIDLSENGISWVHLRTFVGLPSLKTMQLSGNKITDAGMIGRAIKD 337
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
L L +L L+ ++ S L SL L LN +++ F R +L+ ++L++
Sbjct: 338 LHTLQILKLDRNMISKLGEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 397
Query: 263 ---GIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRH-LSGLTNLESINLSFTGISDGSL 317
+ E + +G ++ + L ++G LR L L L ++LS+ +
Sbjct: 398 YLRRVHPESFLQASG-SGVEMMHLQQNEIGRVEELRSLLDALPMLRFLDLSYNKLEAIPF 456
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
L G +L+ L L+ +I A ++ GL L L ++D N L+ +
Sbjct: 457 GALRGHGTLEQLYLNQNRIRMIERDAFMAMPGLRELRLQNNSLSDQLPMPFWNLPGLKGI 516
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
+I + + SL L++S N
Sbjct: 517 DISYNNFRRMDPSLLVGVPSLRRLDISGNA 546
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
L+GL L+++ + + + L + L+ L ++++ + + Y R +L ++ +
Sbjct: 214 LSGLRKLEAVTIQSEHLKR--LPDFSGLSKLRYINVQSGSLIELAPPYFRGLISLETVHV 271
Query: 380 CGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
G LT + DL LTL++LS+N ++ L GL L ++ +S ++IT AG+
Sbjct: 272 TGSASLTRLEAGLLNDLPKLTLIDLSEN-GISWVHLRTFVGLPSLKTMQLSGNKITDAGM 330
Query: 439 --RHLKPLKNLRSLTLESCKVT 458
R +K L L+ L L+ ++
Sbjct: 331 IGRAIKDLHTLQILKLDRNMIS 352
>gi|255524523|ref|ZP_05391478.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296186022|ref|ZP_06854427.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
gi|255511819|gb|EET88104.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|296049290|gb|EFG88719.1| leucine Rich repeat protein [Clostridium carboxidivorans P7]
Length = 683
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 149/316 (47%), Gaps = 59/316 (18%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
Q + L NL LDL + ++I + LK L KL++L N SD+ PL LT+
Sbjct: 371 QDISGIENLTNLQFLDLSQ-SKI-SDISELKNLTKLQTL---LLNDNEISDISPLQNLTD 425
Query: 182 LKSLQISCSKVTD-SGIAYLKGLQKLTLLN-----------LEGCPVTAACLDSLSALGS 229
LK L + ++++D + + YL L +L L N L + + +S
Sbjct: 426 LKQLDLEENRISDITPLQYLSDLNELYLKNNRITNISKLEWLTNLKILYLSQNQISDYSP 485
Query: 230 L--FYLNL--------------NRCQLSDDGCEKFSR--------------LTNLESLNL 259
+ +Y NL + D+ EK R + N+ SLN
Sbjct: 486 VKRYYDNLTDKDFNMTNSTDSKDIVTFKDENLEKAVRDKINKETGDIYITDVKNIVSLNA 545
Query: 260 DSCGIGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
I D G+ NLT L+ L+L + QV S + LS LTNLE++NLS+ SD +
Sbjct: 546 SHKNIKDISGIENLTS---LQTLDLGNNQV--SDISVLSSLTNLETLNLSYNEFSD--IS 598
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
KL GLS L++LNL++ +I D ++A+ +L L L+L +I++ L+ NL++L
Sbjct: 599 KLKGLSKLETLNLNSNEIGD--ISAIQTLNNLKSLNLSNCKISNINP--LKGLNNLKTLW 654
Query: 379 ICGGGLTDAGVKHIKD 394
+ ++D+ + +KD
Sbjct: 655 LNNNEMSDSDKEALKD 670
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 168/391 (42%), Gaps = 60/391 (15%)
Query: 97 GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI-------------NLV---KLDLER 140
+ LRGL+NL L +N + +++ I N+V ++LE+
Sbjct: 280 NNINALRGLTNLNLLYLGQNEILDYSPTRSYYAKILNKDFDLIDSNDDNIVTFKDINLEK 339
Query: 141 CTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
R G + + K+ SL N D+ + LTNL+ L +S SK++D
Sbjct: 340 AVRSEINKPSGDIYKSDVEKIVSLQPYHENI---QDISGIENLTNLQFLDLSQSKISD-- 394
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
I+ LK L KL L L ++ + L L L L+L ++SD L++L
Sbjct: 395 ISELKNLTKLQTLLLNDNEISD--ISPLQNLTDLKQLDLEENRISD--ITPLQYLSDLNE 450
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG--SSGLRHLSGLTNLESINLSFTGISD 314
L L + I + L L NLK L LS Q+ S R+ LT+ + + T +D
Sbjct: 451 LYLKNNRIT--NISKLEWLTNLKILYLSQNQISDYSPVKRYYDNLTDKD---FNMTNSTD 505
Query: 315 GSLRKLAGLSSLKSLNLDA----RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ + K NL+ + +TG +T + + L+ I D +
Sbjct: 506 S-----KDIVTFKDENLEKAVRDKINKETGDIYITDVKNIVSLNASHKNIKD-----ISG 555
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLN 427
+NL SL+ D G + D+S L+ L + NL+ IS GL+ L +LN
Sbjct: 556 IENLTSLQTL-----DLGNNQVSDISVLSSLTNLETLNLSYNEFSDISKLKGLSKLETLN 610
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
++++ I + ++ L NL+SL L +CK++
Sbjct: 611 LNSNEI--GDISAIQTLNNLKSLNLSNCKIS 639
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 33/153 (21%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR--NNAITAQGMKAFA 128
++G I++ D N+ SL+ S ++ + G+ NLTSL NN ++ + +
Sbjct: 528 ETGDIYITDVKNIVSLN------ASHKNIKDISGIENLTSLQTLDLGNNQVS--DISVLS 579
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------------ 170
L NL L+L + LKGL KLE+LN+ N I D
Sbjct: 580 SLTNLETLNLSYNE--FSDISKLKGLSKLETLNLN-SNEIGDISAIQTLNNLKSLNLSNC 636
Query: 171 --SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
S++ PL GL NLK+L ++ ++++DS LK
Sbjct: 637 KISNINPLKGLNNLKTLWLNNNEMSDSDKEALK 669
>gi|226223039|ref|YP_002757146.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|386731175|ref|YP_006204671.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406703195|ref|YP_006753549.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
gi|225875501|emb|CAS04202.1| Putative internalin, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|384389933|gb|AFH79003.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes 07PF0776]
gi|406360225|emb|CBY66498.1| internalin F (LPXTG motif) [Listeria monocytogenes L312]
Length = 823
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|320168558|gb|EFW45457.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 828
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 120/271 (44%), Gaps = 6/271 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHGGLVN 150
QI+ GL+ LT L NN I++ A+A L L+ L L R T I+ +
Sbjct: 120 QITSISANAFVGLTALTQL-LLYNNQISSIPASAWADLNTLINLSLYQNRITSINDA--S 176
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L L L++L I N IT +GLT+L L + + +T L LT L
Sbjct: 177 LTSLTALKTL-ILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLY 235
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
L + + D+ + L +L LNL QL+ F+ L L L L I
Sbjct: 236 LSSNQLVSIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAAD 295
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
TGL L L+L+ Q S L+GL L ++ L I+ AG+++L+++
Sbjct: 296 AFTGLNALSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVV 355
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L QIT +A T LT +T+L L G +T
Sbjct: 356 LSTNQITSIAASAFTGLTAVTYLVLDGNPVT 386
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 108/251 (43%), Gaps = 7/251 (2%)
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS---CG 263
T L+L+G + + + + L +L L+L QL+ F+ LT L+ L LD+
Sbjct: 64 TRLSLQGNLIPSIAAGAFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLDNNQITS 123
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
I V LT L L + + +S L+ L NL T I+D SL L
Sbjct: 124 ISANAFVGLTALTQLLLYNNQISSIPASAWADLNTLINLSLYQNRITSINDASLTSL--- 180
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
++LK+L LD QIT A LT LT+L + IT A + L L +
Sbjct: 181 TALKTLILDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQ 240
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
L DL++LTLLNL N LT + +GL L L + ++ITS
Sbjct: 241 LVSIPADAFTDLTALTLLNLRDN-QLTSISANAFTGLVALTQLQLPGNQITSIAADAFTG 299
Query: 444 LKNLRSLTLES 454
L L L L S
Sbjct: 300 LNALSFLDLTS 310
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 129/326 (39%), Gaps = 12/326 (3%)
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ N I + AF GL L L L N L L+ L + N IT
Sbjct: 69 QGNLIPSIAAGAFTGLTALTTLHLYANQLTSIPAYNFTVLTALKDLRLD-NNQITSISAN 127
Query: 175 PLSGLTNLKSL-----QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
GLT L L QIS + S A L L L+L + A L SL+AL +
Sbjct: 128 AFVGLTALTQLLLYNNQIS--SIPASAWADLNTLINLSLYQNRITSINDASLTSLTALKT 185
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L+ Q++ F+ LT+L L + S I L L CL LS Q+
Sbjct: 186 LI---LDNNQITSVPANAFAGLTSLTYLTVQSNPITSISAGAFASLSALTCLYLSSNQLV 242
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349
S + LT L +NL ++ S GL +L L L QIT A T L
Sbjct: 243 SIPADAFTDLTALTLLNLRDNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNA 302
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L+ LDL + + ++ L L +L + +T +++L + LS N +
Sbjct: 303 LSFLDLTSNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTN-QI 361
Query: 410 TDKTLELISGLTGLVSLNVSNSRITS 435
T +GLT + L + + +T+
Sbjct: 362 TSIAASAFTGLTAVTYLVLDGNPVTT 387
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
Q++ GL LT L N IT+ AF GL L LDL L
Sbjct: 264 QLTSISANAFTGLVALTQLQLPGNQ-ITSIAADAFTGLNALSFLDLTSNQFSSIPSSALT 322
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
GL L +L I + N IT +G+T L+++ +S +++T + GL +T L L+
Sbjct: 323 GLPALSTL-ILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAFTGLTAVTYLVLD 381
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
G PVT L + YL++++ +S +
Sbjct: 382 GNPVTTLPPGLFQGLPNGLYLSVSQQYMSPN 412
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 2/209 (0%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+ GL++LT L+ + +N IT+ AFA L L L L +
Sbjct: 192 QITSVPANAFAGLTSLTYLTVQ-SNPITSISAGAFASLSALTCLYLSSNQLVSIPADAFT 250
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L LN++ N +T +GL L LQ+ +++T GL L+ L+L
Sbjct: 251 DLTALTLLNLR-DNQLTSISANAFTGLVALTQLQLPGNQITSIAADAFTGLNALSFLDLT 309
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
++ +L+ L +L L L ++ F+ +T L+++ L + I
Sbjct: 310 SNQFSSIPSSALTGLPALSTLILYTNSITSIPANAFAGMTALQAVVLSTNQITSIAASAF 369
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
TGL + L L V + GL N
Sbjct: 370 TGLTAVTYLVLDGNPVTTLPPGLFQGLPN 398
>gi|443316011|ref|ZP_21045475.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
gi|442784393|gb|ELR94269.1| Leucine Rich Repeat (LRR)-containing protein [Leptolyngbya sp. PCC
6406]
Length = 437
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 166/348 (47%), Gaps = 43/348 (12%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
++L S+ LSG+ ++D + L + L+SL F QI++ ++ L GL NLT LS N
Sbjct: 102 TNLTSLVLSGNQISD--IQPLASLTKLESL-FLESNQITN--IQSLGGLHNLTWLSLSGN 156
Query: 117 NAITAQGMKAFAGL----------INLVKL----DLERCTRIHGGLVNLKGLMKLESLNI 162
+ Q + GL +++ L +LER + +V + L LE L
Sbjct: 157 QVVDVQPLSNLTGLEWLFLDDNQIVDVAPLATLQNLERLLLSYNQIVEIGALSALEKLQN 216
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
+ N D++PLSGL NL L++ ++V + I L L+ L L L+ + +
Sbjct: 217 LYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGLDDNQIVD--VQ 272
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC---NLK 279
L+AL +L L LN Q++D + LTNLESL L GD +V++ L NL
Sbjct: 273 PLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVL-----GDNQIVDIQSLSLLENLT 325
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
L LS Q+ + LS L LE + L+ I D ++ LA L++L L L QI D
Sbjct: 326 FLVLSGNQI--VNVSPLSALVRLERLGLNDNQIQD--VQPLATLTNLSVLVLSNNQIVDV 381
Query: 340 -GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
LAAL ++ GL LD +I D L L L + G L+D
Sbjct: 382 EPLAALENV-GLLSLD--HNQIVD--IQPLSQLSRLGLLHLAGNPLSD 424
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 153/314 (48%), Gaps = 43/314 (13%)
Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
D++PLS LTNL SL +S ++++D I L L KL L LE +T + SL L +L
Sbjct: 94 DVRPLSTLTNLTSLVLSGNQISD--IQPLASLTKLESLFLESNQITN--IQSLGGLHNLT 149
Query: 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291
+L+L+ Q+ D + S LT LE L LD I D + L L NL+ L LS Q+
Sbjct: 150 WLSLSGNQVVD--VQPLSNLTGLEWLFLDDNQIVD--VAPLATLQNLERLLLSYNQIVEI 205
Query: 292 G--------------------LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
G ++ LSGL NL + L + + ++ LA L +L+ L L
Sbjct: 206 GALSALEKLQNLYLNGNQIEDVQPLSGLRNLAWLELKENQVMN--IQPLADLENLRWLGL 263
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
D QI D + L +L+ L +L L G +ITD + L NL SL + + D ++
Sbjct: 264 DDNQIVD--VQPLAALSTLKNLYLNGNQITD--VSSLAALTNLESLVLGDNQIVD--IQS 317
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+ L +LT L LS N + L S L L L +++++I ++ L L NL L
Sbjct: 318 LSLLENLTFLVLSGNQIVNVSPL---SALVRLERLGLNDNQIQD--VQPLATLTNLSVLV 372
Query: 452 LESCKVTANDIKRL 465
L + ++ D++ L
Sbjct: 373 LSNNQIV--DVEPL 384
>gi|46906647|ref|YP_013036.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|405751633|ref|YP_006675098.1| internalin F [Listeria monocytogenes SLCC2378]
gi|424713287|ref|YP_007014002.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
gi|46879912|gb|AAT03213.1| internalin [Listeria monocytogenes serotype 4b str. F2365]
gi|404220833|emb|CBY72196.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2378]
gi|424012471|emb|CCO63011.1| Internalin-A [Listeria monocytogenes serotype 4b str. LL195]
Length = 823
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|320167410|gb|EFW44309.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 702
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 124/295 (42%), Gaps = 1/295 (0%)
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
+ N IT + LT L L + +++T GL LTLL+L P+T+ +
Sbjct: 67 YTNNITSIPANAFASLTRLTILTLDVNQITSIPATAFTGLSALTLLSLGSNPITSMSASA 126
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+ L L L+L+ ++ F+ L+ L + L I L +L+ L L
Sbjct: 127 FTDLTKLTQLSLDNTPITSISANAFAGLSALTQMFLYQTQITSISASAFADLRSLQKLYL 186
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
++ S +GLT L ++LS+ I+ S A LSSL L L Q++
Sbjct: 187 YGNRITSISANAFTGLTKLAYLDLSYNQITSISANAFADLSSLTDLRLYFNQMSSLAANT 246
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
T L+ LT L L +IT A L+ L + +T L SLT+L +
Sbjct: 247 FTGLSALTQLSLLNNQITAISANAFTGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQV 306
Query: 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
N +T + +GL+ L ++ ++ITS L L+ L L++ T
Sbjct: 307 YNNT-ITSISANAFTGLSALTMFLLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 117/271 (43%), Gaps = 1/271 (0%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N IT +GL+ L L + + +T + L KLT L+L+ P+T+ ++
Sbjct: 92 VNQITSIPATAFTGLSALTLLSLGSNPITSMSASAFTDLTKLTQLSLDNTPITSISANAF 151
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ L +L + L + Q++ F+ L +L+ L L I TGL L L+LS
Sbjct: 152 AGLSALTQMFLYQTQITSISASAFADLRSLQKLYLYGNRITSISANAFTGLTKLAYLDLS 211
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344
Q+ S + L++L + L F +S + GLS+L L+L QIT A
Sbjct: 212 YNQITSISANAFADLSSLTDLRLYFNQMSSLAANTFTGLSALTQLSLLNNQITAISANAF 271
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
T L L L L IT A +L L++ +T LS+LT+ L+
Sbjct: 272 TGLNALKLLYLHNNLITTIAANSFAGLPSLTVLQVYNNTITSISANAFTGLSALTMFLLN 331
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITS 435
N +T + LT L L + N+ T+
Sbjct: 332 YN-QITSIPASAFTELTTLQVLALDNNPFTT 361
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 14 LVYSRCLTEVSLEAFRDC-ALQDLCLGQYPGVNDKWMDVIASQG-SSLLSVDLSGSDVTD 71
+Y +T +S AF D +LQ L L G + A G + L +DLS + +T
Sbjct: 161 FLYQTQITSISASAFADLRSLQKLYLY---GNRITSISANAFTGLTKLAYLDLSYNQITS 217
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
D S+L L F Q+S GLS LT LS NN ITA AF GL
Sbjct: 218 ISANAFADLSSLTDLRLYFN-QMSSLAANTFTGLSALTQLSLL-NNQITAISANAFTGL- 274
Query: 132 NLVKLDLERCTRIHGGLV------NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
N +KL +H L+ + GL L L + + N IT +GL+ L
Sbjct: 275 NALKL-----LYLHNNLITTIAANSFAGLPSLTVLQV-YNNTITSISANAFTGLSALTMF 328
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
++ +++T + L L +L L+ P T
Sbjct: 329 LLNYNQITSIPASAFTELTTLQVLALDNNPFT 360
>gi|254825773|ref|ZP_05230774.1| internalin [Listeria monocytogenes FSL J1-194]
gi|293595017|gb|EFG02778.1| internalin [Listeria monocytogenes FSL J1-194]
Length = 823
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|290991662|ref|XP_002678454.1| leucine rich repeat protein-like protein [Naegleria gruberi]
gi|284092066|gb|EFC45710.1| leucine rich repeat protein-like protein [Naegleria gruberi]
Length = 429
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 166/356 (46%), Gaps = 30/356 (8%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ----ISDGGL 99
V+ +W +VI + S D+ +I K+ L S F I+ + D L
Sbjct: 77 VSKQWFNVIR---------NYSKLDIEFKKVISAKNVKLLASSQFLESIRSVRIVFDTLL 127
Query: 100 EHLRGLSNLTSLS--FRRNNAITAQ----GMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
E R + + +L+ F N I + ++ A + L+K++ I VN G
Sbjct: 128 EFWRTIEKMKNLTKLFLSENIIFGELLFDTLRPLAPRLKLLKIE---NNTIRYNAVNFIG 184
Query: 154 -LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
++ LE L I+ N I S + P+ L +L +L I +++ G + + +Q+LT LN+E
Sbjct: 185 EMINLEELYIQ-RNMI--SLILPIKELKHLHTLDIGNNEIGMIGASVIGEMQQLTRLNVE 241
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG--LV 270
+T S+ L +L LN+ + + +G + L L LNL+ IGD+G L+
Sbjct: 242 NNSITTDGARSIGKLKNLTELNIKKNSIGQEGVQHLCELVKLTRLNLNYNQIGDKGALLI 301
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
+L + +L L++++ + +G+R +S L L S+++ F ++ + + L L L+
Sbjct: 302 SL-NMKHLTDLDITENHITVAGIRSISNLKTLTSLSIGFNRLNSKCVEWICELDQLVHLD 360
Query: 331 LDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
+I D G+ ++ + LT ++L ++ GA + L SLEI LT
Sbjct: 361 AKFNEIDDEGVLLISERMKQLTSVNLMSNYLSMKGAIAIGELPELISLEIDNAFLT 416
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LK L++ + + + + + + NLE + + IS + + L L +L++ +I
Sbjct: 165 LKLLKIENNTIRYNAVNFIGEMINLEELYIQRNMIS--LILPIKELKHLHTLDIGNNEIG 222
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
G + + + LT L++ IT GA + KNL L I + GV+H+ +L
Sbjct: 223 MIGASVIGEMQQLTRLNVENNSITTDGARSIGKLKNLTELNIKKNSIGQEGVQHLCELVK 282
Query: 398 LTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
LT LNL+ N + DK LIS + L L+++ + IT AG+R + LK L SL++
Sbjct: 283 LTRLNLNYN-QIGDKGALLISLNMKHLTDLDITENHITVAGIRSISNLKTLTSLSI 337
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 7/258 (2%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
+L LL +E + ++ + + +L L + R +S L +L +L++ + I
Sbjct: 164 RLKLLKIENNTIRYNAVNFIGEMINLEELYIQRNMIS--LILPIKELKHLHTLDIGNNEI 221
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 324
G G + + L L + + + + G R + L NL +N+ I ++ L L
Sbjct: 222 GMIGASVIGEMQQLTRLNVENNSITTDGARSIGKLKNLTELNIKKNSIGQEGVQHLCELV 281
Query: 325 SLKSLNLDARQITDTGLAALTSLT--GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L LNL+ QI D G A L SL LT LD+ IT +G + N K L SL I
Sbjct: 282 KLTRLNLNYNQIGDKG-ALLISLNMKHLTDLDITENHITVAGIRSISNLKTLTSLSIGFN 340
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHL 441
L V+ I +L L L+ N + D+ + LIS + L S+N+ ++ ++ G +
Sbjct: 341 RLNSKCVEWICELDQLVHLDAKFN-EIDDEGVLLISERMKQLTSVNLMSNYLSMKGAIAI 399
Query: 442 KPLKNLRSLTLESCKVTA 459
L L SL +++ +T
Sbjct: 400 GELPELISLEIDNAFLTV 417
>gi|47091555|ref|ZP_00229352.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|254932714|ref|ZP_05266073.1| internalin [Listeria monocytogenes HPB2262]
gi|405748772|ref|YP_006672238.1| internalin F [Listeria monocytogenes ATCC 19117]
gi|417314456|ref|ZP_12101155.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|424822145|ref|ZP_18247158.1| Internalin [Listeria monocytogenes str. Scott A]
gi|47020232|gb|EAL10968.1| internalin [Listeria monocytogenes str. 4b H7858]
gi|293584270|gb|EFF96302.1| internalin [Listeria monocytogenes HPB2262]
gi|328467702|gb|EGF38754.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1816]
gi|332310825|gb|EGJ23920.1| Internalin [Listeria monocytogenes str. Scott A]
gi|404217972|emb|CBY69336.1| internalin F (LPXTG motif) [Listeria monocytogenes ATCC 19117]
Length = 823
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|290975616|ref|XP_002670538.1| predicted protein [Naegleria gruberi]
gi|284084098|gb|EFC37794.1| predicted protein [Naegleria gruberi]
Length = 333
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 11/252 (4%)
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 219
LNI+ N I + ++ LSGLT L SL IS +K+ + L +LT+LN+ V
Sbjct: 63 LNIEH-NQIGNEGLELLSGLTRLDSLDISTNKI--DKFNSICNLNQLTILNVSNNIVGNE 119
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN-- 277
+ +S L L L + C + ++G + L NL + N+ + I +EG++ +CN
Sbjct: 120 GVKFISKLKHLTELVMQSCNVKEEGMKSICELKNLTNFNISNNFIRNEGMI---LICNSF 176
Query: 278 --LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
LKCL S ++ + G++ ++ L L +N+ IS+ ++ ++GL L L++
Sbjct: 177 PLLKCLRASSNKISNEGVQDITKLERLTDLNICRNEISNNGMKSISGLKKLTCLDVSGNN 236
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK-D 394
I+D G +++ L+ L+ L + +I D G + NL L I + + G K I +
Sbjct: 237 ISDEGATSISQLSQLSSLYINDNQIGDEGMESISEMNNLSKLWINDNQIGNIGAKAISVN 296
Query: 395 LSSLTLLNLSQN 406
+ LT L ++ N
Sbjct: 297 MHQLTFLFIANN 308
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 135/261 (51%), Gaps = 13/261 (4%)
Query: 43 GVND---KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL 99
G ND + + +I +SL +++ + + + GL L + L SLD IS +
Sbjct: 41 GFNDIGGEGLKLIKELSNSLTILNIEHNQIGNEGLELLSGLTRLDSLD------ISTNKI 94
Query: 100 EHLRGLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
+ + NL L+ NN + +G+K + L +L +L ++ C G+ ++ L L
Sbjct: 95 DKFNSICNLNQLTILNVSNNIVGNEGVKFISKLKHLTELVMQSCNVKEEGMKSICELKNL 154
Query: 158 ESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
+ NI N I + M + + LK L+ S +K+++ G+ + L++LT LN+ +
Sbjct: 155 TNFNIS-NNFIRNEGMILICNSFPLLKCLRASSNKISNEGVQDITKLERLTDLNICRNEI 213
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
+ + S+S L L L+++ +SD+G S+L+ L SL ++ IGDEG+ +++ +
Sbjct: 214 SNNGMKSISGLKKLTCLDVSGNNISDEGATSISQLSQLSSLYINDNQIGDEGMESISEMN 273
Query: 277 NLKCLELSDTQVGSSGLRHLS 297
NL L ++D Q+G+ G + +S
Sbjct: 274 NLSKLWINDNQIGNIGAKAIS 294
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 111/222 (50%), Gaps = 4/222 (1%)
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTN-LE 303
E +L L+ L L+ IG+E L+ ++ + L L + +G GL+ + L+N L
Sbjct: 2 EFICKLNQLKILELELSDIGNEQLIQISQSMKQLTKLSVGFNDIGGEGLKLIKELSNSLT 61
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+N+ I + L L+GL+ L SL++ +I ++ +L LT L++ + +
Sbjct: 62 ILNIEHNQIGNEGLELLSGLTRLDSLDISTNKIDK--FNSICNLNQLTILNVSNNIVGNE 119
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G ++ K+L L + + + G+K I +L +LT N+S N + + + + L
Sbjct: 120 GVKFISKLKHLTELVMQSCNVKEEGMKSICELKNLTNFNISNNFIRNEGMILICNSFPLL 179
Query: 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
L S+++I++ G++ + L+ L L + +++ N +K +
Sbjct: 180 KCLRASSNKISNEGVQDITKLERLTDLNICRNEISNNGMKSI 221
>gi|356506506|ref|XP_003522022.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]
Length = 669
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 139/476 (29%), Positives = 214/476 (44%), Gaps = 80/476 (16%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD------- 79
L+ LCL G+ D +D++A + L ++DLS +T+ L HL+D
Sbjct: 182 LRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGCF 241
Query: 80 ---------------CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124
C L+ LD + C IS H+ GLS LTS+S I A G
Sbjct: 242 GIDDDSLDVDLLKQGCKTLKRLDISGCQNIS-----HV-GLSKLTSISGGLEKLILADGS 295
Query: 125 KAFAGLIN-LVKLDLERCTRIHGGLVNLKGL-------MKLESLNIKWCNCITDSDMKPL 176
L + L KL + + + G V +GL + L L++ C +TD + L
Sbjct: 296 PVTLSLADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFL 355
Query: 177 -SGLTNLKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGCPVTAACLDSLSALGS---- 229
S +L+ L I+ C K+TD IA + LT L +E C + + ++ +G
Sbjct: 356 VSKHKDLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPS--EAFVLIGQKCHY 413
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCN-LKCLEL-SDT 286
L L+L ++ D+G S + L SL + C I D GL + C+ LK L+L T
Sbjct: 414 LEELDLTDNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYVGMRCSKLKELDLYRST 473
Query: 287 QVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAA 343
V G+ ++ G LE IN S+ T I+D +L L+ S+L++L + +T GLAA
Sbjct: 474 GVDDLGISAIAGGCPGLEMINTSYCTSITDRALIALSKCSNLETLEIRGCLLVTSIGLAA 533
Query: 344 LT-SLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSS 397
+ + L+ LD+ I DSG L +F +NLR + + +TD G + +I L S
Sbjct: 534 IAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQINLSYSSVTDVGLLSLANISCLQS 593
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 453
TLL+L GLV ++ + + GL +K +LRSL E
Sbjct: 594 FTLLHLQ-----------------GLVPGGLAAALLACGGLTKVKLHLSLRSLLPE 632
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 153/397 (38%), Gaps = 96/397 (24%)
Query: 117 NAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNL----------------------KG 153
+ A+ + A A N+ +LDL C R+ G + L G
Sbjct: 61 RPLRAEHLPALAARYPNVTELDLSLCPRVGDGALGLVAGAYAATLRRMDLSRSRRFTATG 120
Query: 154 LMKLES-------LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLK-GLQ 204
L+ L + L++ + D+ + ++ NL+ L ++ C VTD GI + G +
Sbjct: 121 LLSLGARCEHLVELDLSNATELRDAGVAAVARARNLRKLWLARCKMVTDMGIGCIAVGCR 180
Query: 205 KLTLLNLEGC--------------------------PVTAACLDSLSALGSLFYLNLNRC 238
KL LL L+ C P+T CL S+ L L L L C
Sbjct: 181 KLRLLCLKWCVGIGDLGVDLVAIKCKELTTLDLSYLPITEKCLPSIFKLQHLEDLVLEGC 240
Query: 239 ----------QLSDDGCEKFSRLTNLESLNLDSCGI--------GDEGLV---------- 270
L GC+ RL N+ G+ G E L+
Sbjct: 241 FGIDDDSLDVDLLKQGCKTLKRLDISGCQNISHVGLSKLTSISGGLEKLILADGSPVTLS 300
Query: 271 ---NLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLS-FTGISDGSLRKLAGLSS 325
L L L+ + L V S GLR + L +L ++LS G++D +L L
Sbjct: 301 LADGLNKLSMLQSIVLDGCPVTSEGLRAIGNLCISLRELSLSKCLGVTDEALSFLVSKHK 360
Query: 326 -LKSLNLD-ARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYL--RNFKNLRSLEIC 380
L+ L++ R+ITD +A++ S TGLT L + + S A L + L L++
Sbjct: 361 DLRKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVPSEAFVLIGQKCHYLEELDLT 420
Query: 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+ D G+ I S LT L + N+TD+ L +
Sbjct: 421 DNEIDDEGLMSISSCSWLTSLKIGICLNITDRGLAYV 457
>gi|417316691|ref|ZP_12103332.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
gi|328476023|gb|EGF46741.1| internalin, peptidoglycan bound protein (LPXTG motif) [Listeria
monocytogenes J1-220]
Length = 830
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|302767392|ref|XP_002967116.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
gi|300165107|gb|EFJ31715.1| hypothetical protein SELMODRAFT_87311 [Selaginella moellendorffii]
Length = 637
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 198/432 (45%), Gaps = 55/432 (12%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI 92
LQ + L G++D + +AS L ++D+S +++TD G+ L + +L+ L+ C
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 93 QISDGGLEH------------LRGLSNL-------TSLSF---------RRNNAITAQGM 124
+ D GL R ++N+ SL F ++ + IT Q +
Sbjct: 231 NVGDAGLTRTSTSLLELDLSCCRSVTNVGISFLSKRSLQFLKLGFCSPVKKRSQITGQLL 290
Query: 125 KAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPL-SGLTN 181
+A L + L L C I G + G ++L L++ C +TDS M + G N
Sbjct: 291 EAVGKLTQIQTLKLAGC-EIAGDGLRFVGSCCLQLSDLSLSKCRGVTDSGMASIFHGCKN 349
Query: 182 LKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYL 233
L+ L ++C +++T IA + L L +E C + +++ L L L
Sbjct: 350 LRKLDLTCCLDLTEITAYNIA--RSSAGLVSLKIEACRILTE--NNIPLLMERCSCLEEL 405
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDT-QVGSS 291
++ C + D G E ++ L++L L C + D G+ ++ C +L L+L + VG +
Sbjct: 406 DVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHVGRNCSDLIELDLYRSGNVGDA 465
Query: 292 GLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLT 348
G+ + +G L +NLS+ I+D S+ ++ LS L+ L + R GL L
Sbjct: 466 GVASIAAGCRKLRILNLSYCPNITDASIVSISQLSHLQQLEI--RGCKRVGLEKKLPEFK 523
Query: 349 GLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L LDL I D G + + F NL+ L + +++AG+ + +L L + L Q
Sbjct: 524 NLVELDLKHCGIGDRGMTSIVYCFPNLQQLNLSYCRISNAGLVMLGNLRCLQNVKLVQ-- 581
Query: 408 NLTDKTLELISG 419
+ D ++E+++
Sbjct: 582 -IGDVSIEVLAA 592
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 201/420 (47%), Gaps = 54/420 (12%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLS--NLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+ ++SLD + CI+I+D L + L+ L SL R T G+ A A
Sbjct: 65 TGIESLDLSSCIKITDEDLALVGELAGTRLRSLGLARMGGFTVAGIVALA---------- 114
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
+ L L+++ CN + D ++ + L +L+ L ++ C ++D+G+
Sbjct: 115 -------------RNCSALVELDLRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGL 161
Query: 198 AYLK-GLQKLTLLNLEGCP-VTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
L G +KL ++ L+GC ++ A L L++ L ++++ +++DDG S L +L
Sbjct: 162 GCLAAGCKKLQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSL 221
Query: 255 ESLNLDSCG-IGDEGLVNL-TGLC--NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 309
LNL +C +GD GL T L +L C S T VG S L S L+ + L F
Sbjct: 222 RVLNLAACSNVGDAGLTRTSTSLLELDLSCCR-SVTNVGISFLSKRS----LQFLKLGFC 276
Query: 310 ------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGAR-IT 361
+ I+ L + L+ +++L L +I GL + S L+ L L R +T
Sbjct: 277 SPVKKRSQITGQLLEAVGKLTQIQTLKLAGCEIAGDGLRFVGSCCLQLSDLSLSKCRGVT 336
Query: 362 DSG-AAYLRNFKNLRSLEI-CGGGLTDAGVKHIKDLSSLTLLNLS-QNCN-LTDKTLEL- 416
DSG A+ KNLR L++ C LT+ +I SS L++L + C LT+ + L
Sbjct: 337 DSGMASIFHGCKNLRKLDLTCCLDLTEITAYNIAR-SSAGLVSLKIEACRILTENNIPLL 395
Query: 417 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
+ + L L+V++ I AGL + K L++L L CKV+ N I+ + R+ +L+
Sbjct: 396 MERCSCLEELDVTDCNIDDAGLECIAKCKFLKTLKLGFCKVSDNGIEHV-GRNCSDLIEL 454
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 34/229 (14%)
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
+R T +ESL+L SC I DE L L G EL+ T++ S GL + G T +
Sbjct: 61 LARHTGIESLDLSSCIKITDEDLA-LVG-------ELAGTRLRSLGLARMGGFTVAGIVA 112
Query: 307 LS-------------FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTH 352
L+ + D L + L SL+ L+L I+D GL L + G
Sbjct: 113 LARNCSALVELDLRCCNSLGDLELAAVCQLGSLRKLDLTGCYMISDAGLGCLAA--GCKK 170
Query: 353 LDLFGAR----ITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L + + I+D+G +L N K L ++++ +TD GV+ + +L SL +LNL+
Sbjct: 171 LQVVVLKGCVGISDAGLCFLASNCKELTTIDVSYTEITDDGVRCLSNLPSLRVLNLAACS 230
Query: 408 NLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC 455
N+ D L S T L+ L++S R +T+ G+ L ++L+ L L C
Sbjct: 231 NVGDAGLTRTS--TSLLELDLSCCRSVTNVGISFLSK-RSLQFLKLGFC 276
>gi|300765671|ref|ZP_07075649.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404279969|ref|YP_006680867.1| internalin F [Listeria monocytogenes SLCC2755]
gi|404285784|ref|YP_006692370.1| internalin F [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|300513659|gb|EFK40728.1| internalin [Listeria monocytogenes FSL N1-017]
gi|404226604|emb|CBY48009.1| internalin F (LPXTG motif) [Listeria monocytogenes SLCC2755]
gi|404244713|emb|CBY02938.1| internalin F (LPXTG motif) [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 823
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|47219755|emb|CAG03382.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 43/326 (13%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
++G+ +ESLN+ C +TD+ + + + +L+ L +S C ++TDS + + + L+ L
Sbjct: 89 IQGMPHIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRIAQYLKNL 148
Query: 207 TLLNLEGCP--VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCG 263
+L L GC L L L LNL C+ +SD G S +T +
Sbjct: 149 EVLELGGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAA------- 201
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFT-GISDGSLRKLA 321
EG ++L L C +L+D L+H+S GL L+ +NLSF GISDG + L+
Sbjct: 202 ---EGCLSLEKLTLQDCQKLTDLS-----LKHVSKGLNKLKVLNLSFCGGISDGGMIHLS 253
Query: 322 GLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYLRNFKNLRSL 377
++ L SLNL + I+DTG+ A+ SL L+ LD+ F +I D A++
Sbjct: 254 HMTHLCSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKIGDQSLAHIAQ------- 305
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVSN-SRITS 435
GL D + ++ + L LN+ Q +TDK LELI+ LT L +++ ++IT
Sbjct: 306 -----GLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKITK 360
Query: 436 AGLRHLKPLKNLRSLTLESCKVTAND 461
GL + L L+ L L ++T ++
Sbjct: 361 RGLERITQLPCLKVLNLGLWQMTESE 386
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 152/319 (47%), Gaps = 56/319 (17%)
Query: 82 NLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLI-NLVKLDL 138
+++SL+ C ++D GL H ++ + +L L+ IT + A + NL L+L
Sbjct: 94 HIESLNLCGCFNLTDNGLGHAFVQDIPSLRVLNLSLCKQITDSSLGRIAQYLKNLEVLEL 153
Query: 139 ERCTRIH--GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--------NLKSLQIS 188
C+ I G L+ GL +L+SLN++ C ++D + LSG+T +L+ L +
Sbjct: 154 GGCSNITNTGLLLVAWGLHRLKSLNLRSCRHVSDVGIGHLSGMTRSAAEGCLSLEKLTLQ 213
Query: 189 -CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
C K+TD + ++ KGL KL +LNL C +SD G
Sbjct: 214 DCQKLTDLSLKHVSKGLNKLKVLNLSFCG-----------------------GISDGGMI 250
Query: 247 KFSRLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLSGLTNLE 303
S +T+L SLNL SC I D G+++L G L L++S ++G L H++
Sbjct: 251 HLSHMTHLCSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKIGDQSLAHIA------ 304
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT-SLTGLTHLDLFG-ARI 360
G+ DG R + + LK+LN+ +ITD GL + LT LT +DL+G +I
Sbjct: 305 ------QGLDDGINRMVRQMHELKTLNIGQCGRITDKGLELIADHLTQLTGIDLYGCTKI 358
Query: 361 TDSGAAYLRNFKNLRSLEI 379
T G + L+ L +
Sbjct: 359 TKRGLERITQLPCLKVLNL 377
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 17/160 (10%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
+TD L H+ K + L+ L+ +FC ISDGG+ HL +++L SL+ R + I+ G+
Sbjct: 218 LTDLSLKHVSKGLNKLKVLNLSFCGGISDGGMIHLSHMTHLCSLNLRSCDNISDTGIMHL 277
Query: 128 A-GLINLVKLDLERCTR--------IHGGL---VN--LKGLMKLESLNIKWCNCITDSDM 173
A G + L LD+ C + I GL +N ++ + +L++LNI C ITD +
Sbjct: 278 AMGSLRLSGLDVSFCDKIGDQSLAHIAQGLDDGINRMVRQMHELKTLNIGQCGRITDKGL 337
Query: 174 KPLS-GLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNL 211
+ ++ LT L + + C+K+T G+ + L L +LNL
Sbjct: 338 ELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLNL 377
>gi|421888174|ref|ZP_16319282.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
gi|378966463|emb|CCF96030.1| leucine-rich-repeat type III effector protein (GALA5) [Ralstonia
solanacearum K60-1]
Length = 468
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 176/403 (43%), Gaps = 20/403 (4%)
Query: 40 QYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLD-FNFCIQISDG 97
+ P + + + ++ + + D+ VT+ +GL K N +L+ + +D
Sbjct: 8 RSPPLTVQRLRAVSKSVKAAVEADIRQLVVTNRAGLAGAKRTGNYPALEKLTLAVPFTDA 67
Query: 98 GLEHLRGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
L+ L L L R ITA G+ A + LV+L+L +G + L G +
Sbjct: 68 DLKGL--PPTLKELDLSRCRGGITAAGI-AHLNRLPLVRLNL------NGNRIGLAGAQR 118
Query: 157 LE------SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
L +L++ C I + + L+ L +L +S +++ G+ L + LT L+
Sbjct: 119 LANHPTLTALDVGRCR-IGPEEARELAASARLTTLNVSRNRIGGEGVRALADCKTLTSLD 177
Query: 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
+ + A L A L LN+NR ++ G + L SL++ IGDEG+
Sbjct: 178 VSENGLGDAEAQRLGASERLTTLNVNRNRIDVPGARALAACKTLTSLDIGGNSIGDEGVD 237
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L L L + VG+ G++ L+ L S+ + I D LA SL +L+
Sbjct: 238 ALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSNNIGDEGANTLAASISLTTLH 297
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ I G AL + T LT L+L + D+GA L L L + GL+DAG
Sbjct: 298 SEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFANTTLVWLSVRRNGLSDAGAI 357
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433
+ +LT L++ N + D ++ L +LNVS++ I
Sbjct: 358 RLAASRTLTTLDIGDNA-IKDAGARALAANRTLTTLNVSSNEI 399
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 160/349 (45%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++L+G+ + +G L + L +LD C +I L + LT+L+ RN
Sbjct: 101 LVRLNLNGNRIGLAGAQRLANHPTLTALDVGRC-RIGPEEARELAASARLTTLNVSRNR- 158
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
I +G++A A L LD+ L +L +LN+ N I + L+
Sbjct: 159 IGGEGVRALADCKTLTSLDVSENGLGDAEAQRLGASERLTTLNVNR-NRIDVPGARALAA 217
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 218 CKTLTSLDIGGNSIGDEGVDALVANAQLTTLNVERAGVGAHGVQALADCKTLTSLRIDSN 277
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + +L +L+ + GIG G L L L L VG +G + L
Sbjct: 278 NIGDEGANTLAASISLTTLHSEGNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQALFA 337
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L +++ G+SD +LA +L +L++ I D G AL + LT L++
Sbjct: 338 NTTLVWLSVRRNGLSDAGAIRLAASRTLTTLDIGDNAIKDAGARALAANRTLTTLNVSSN 397
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L+SL++ + + GV+ + +L+ L +S NC
Sbjct: 398 EIGNAGARALAANARLKSLDLRNNRMLEGGVRALLANRTLSSLGVSFNC 446
>gi|254854137|ref|ZP_05243485.1| internalin [Listeria monocytogenes FSL R2-503]
gi|258607527|gb|EEW20135.1| internalin [Listeria monocytogenes FSL R2-503]
Length = 824
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 164/347 (47%), Gaps = 59/347 (17%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 87 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 135
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ LQ LT +L L LN +SD + LT + SLN
Sbjct: 136 -ISALQNLT---------------------NLRELYLNEDNISD--ISPLANLTKMYSLN 171
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + + L +L+ L N+ L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 172 LGA----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 225
Query: 318 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377
LA L+SL QITD + + ++T L L + +ITD L N L L
Sbjct: 226 SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL 281
Query: 378 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
EI ++D + +KDL+ L +LN+ N ++D + +++ L+ L SL ++N+++ +
Sbjct: 282 EIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQLNSLFLNNNQLGNED 336
Query: 438 LRHLKPLKNLRSLTLESCKVTANDIK------RLQSRDLPNLVSFRP 478
+ + L NL +L L +T DI+ ++ S D N V +P
Sbjct: 337 MEVIGGLTNLTTLFLSQNHIT--DIRPLASLSKMDSADFANQVIKKP 381
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN+T L++ +T +K + NL
Sbjct: 154 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL---TVTESKVKDVTPIANLT 210
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ +T L SL+I +K+
Sbjct: 211 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 266
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 267 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 298
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + + GLTNL ++ LS I
Sbjct: 299 KLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 356
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS + S + A Q+
Sbjct: 357 TD--IRPLASLSKMDSADF-ANQV 377
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Query: 302 LESIN-LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360
LESI L G S++ + L++L+ LNL+ QITD ++ L++L LT+L + +I
Sbjct: 76 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI 133
Query: 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420
TD A L+N NLR L + ++D + + +L+ + LNL N NL+D L +S +
Sbjct: 134 TDISA--LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD--LSPLSNM 187
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
TGL L V+ S++ + + P+ NL L
Sbjct: 188 TGLNYLTVTESKV-----KDVTPIANLTDL 212
>gi|290980195|ref|XP_002672818.1| predicted protein [Naegleria gruberi]
gi|284086397|gb|EFC40074.1| predicted protein [Naegleria gruberi]
Length = 350
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 144/303 (47%), Gaps = 37/303 (12%)
Query: 48 WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHL-RG 104
W +VI ++ LSVDL D ++ N+ L N +I G + + +
Sbjct: 64 WHEVIKNRAK--LSVDLEVEDKIVENIVKSGIIGNIVELKLVGNSVCRIRTKGAQLISQN 121
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT-RI-HGGLVNLKGLMKLESLNI 162
L+ LT+L N +I +G K + + NL L++ C+ RI + G ++ G+ L SL++
Sbjct: 122 LTQLTNLDLSYN-SIGDEGAKHISTMANLTSLNI--CSNRIGYSGSFSVFGMKNLISLDL 178
Query: 163 KWCNCITDSD----MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
+ ++D M +S LKSL++ S + D + + +++LT L++ CP
Sbjct: 179 SYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNCP--- 235
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNL 278
+LS +G F S++ NL +LN+ IGDEG ++ + L
Sbjct: 236 ----NLSVVGVKF----------------ISQMENLNNLNISCNYIGDEGAKIISEMSQL 275
Query: 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
L +S +++G++G ++S L L ++N+S I + L+ LS L LN++A I
Sbjct: 276 TDLNISYSKIGNTGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIET 335
Query: 339 TGL 341
G
Sbjct: 336 EGF 338
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 9/235 (3%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI-QISDGGLEHL 102
+ K +I+ + L ++DLS + + D G H+ +NL SL N C +I G +
Sbjct: 110 IRTKGAQLISQNLTQLTNLDLSYNSIGDEGAKHISTMANLTSL--NICSNRIGYSGSFSV 167
Query: 103 RGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G+ NL SL +F N T Q M + L L + + + + +L
Sbjct: 168 FGMKNLISLDLSYSAFSLENDETFQ-MNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQL 226
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
L++ C ++ +K +S + NL +L ISC+ + D G + + +LT LN+ +
Sbjct: 227 TKLDVSNCPNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIG 286
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+S LG L LN++ + +G + S L+ L LN+++ I EG +N+
Sbjct: 287 NTGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGFLNI 341
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 55/235 (23%)
Query: 238 CQLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
C++ G + S+ LT L +L+L IGDEG +++ + NL L + ++G SG +
Sbjct: 108 CRIRTKGAQLISQNLTQLTNLDLSYNSIGDEGAKHISTMANLTSLNICSNRIGYSGSFSV 167
Query: 297 SGLTNLESINLSFTGIS-----------------------------DGSLRKLA------ 321
G+ NL S++LS++ S D S+ K++
Sbjct: 168 FGMKNLISLDLSYSAFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLT 227
Query: 322 -------------------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ +L +LN+ I D G ++ ++ LT L++ ++I +
Sbjct: 228 KLDVSNCPNLSVVGVKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKIGN 287
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417
+GA Y+ L +L I + G K + LS LT LN++ N T+ L +I
Sbjct: 288 TGAMYISQLGKLTTLNISTNNIGAEGAKSLSHLSQLTDLNINANNIETEGFLNII 342
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL-FG 357
LT L +++LS+ I D + ++ +++L SLN+ + +I +G ++ + L LDL +
Sbjct: 122 LTQLTNLDLSYNSIGDEGAKHISTMANLTSLNICSNRIGYSGSFSVFGMKNLISLDLSYS 181
Query: 358 ARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
A ++ + N K L+SL + L D V+ I ++ LT L++S NL+
Sbjct: 182 AFSLENDETFQMNVISQSKTLKSLRVRYSDLNDRSVEKISEIKQLTKLDVSNCPNLSVVG 241
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ IS + L +LN+S + I G + + + L L + K+
Sbjct: 242 VKFISQMENLNNLNISCNYIGDEGAKIISEMSQLTDLNISYSKI 285
>gi|340057619|emb|CCC51965.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 872
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 195/417 (46%), Gaps = 40/417 (9%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD GL+ ++ C++LQ L + C+++ + L L L +L+ RN + ++G K A
Sbjct: 289 ITDEGLLPVRKCTSLQHLTLDNCVRLR--SINCLGSLHRLHTLTVSRNR-MPSEGFKGLA 345
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L RI L ++ G+ L L++ N +TD L+ + L+ L+++
Sbjct: 346 NLRGLEVLRFAVLNRILT-LESIAGIQCLRELDLTD-NWLTDEGCAFLAHCSQLEHLKLA 403
Query: 189 -CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
C V+D + +++ L L L+L V LDSL + SL L+L C+ D
Sbjct: 404 YCRSVSD--VRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCKDVVD-ISF 460
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L L+SL++ + + GL ++ L L L + + +GL+ + L L ++N
Sbjct: 461 VVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECR-QVAGLKFVGALKQLINLNA 519
Query: 308 SFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
TG+ DG++ + L+ L+ + +TD + L L GL LDL GA +TD G +
Sbjct: 520 EGTGMLDGNIDHITCCQKLEVLSFRNCPFLTD--VRCLKDLGGLKALDLAGAYVTDEGVS 577
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCN--------LTDKTLELI 417
L + +L S+++ G L + H L LT L N+ N L ++E +
Sbjct: 578 TLSHCTSLESIDVSGCCL----ITHFGFLIGLTKLRNVVANGMNVVNVDGLLKSPSMERV 633
Query: 418 S-------------GLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTAN 460
S L L+V NS I++ G+ L+ +L+ L+L+ C ++
Sbjct: 634 SLVESRRLSFVGHVAAARLTELSVENSNISNVGINAVLEGCYSLQRLSLQQCPAISD 690
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 211/495 (42%), Gaps = 97/495 (19%)
Query: 33 LQDLCLGQYPGVND-KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC 91
L+ L L V+D +W+ + +SL ++DLS + V + L L+ CS+L+ L +C
Sbjct: 397 LEHLKLAYCRSVSDVRWVRAL----TSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYC 452
Query: 92 IQISD----------------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ D GL + LT+LS R + G+K
Sbjct: 453 KDVVDISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA--GLKFVGA 510
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L+ L+ E + G + ++ KLE L+ + NC +D++ L L LK+L ++
Sbjct: 511 LKQLINLNAEGTGMLDGNIDHITCCQKLEVLSFR--NCPFLTDVRCLKDLGGLKALDLAG 568
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGC----------------PVTAACLDSLSALGSLFYL 233
+ VTD G++ L L +++ GC V A ++ ++ G L
Sbjct: 569 AYVTDEGVSTLSHCTSLESIDVSGCCLITHFGFLIGLTKLRNVVANGMNVVNVDGLLKSP 628
Query: 234 NLNRCQLSDD------GCEKFSRLTNL--ESLNLDSCGIGD--EGLVNLTGLCNLKCLEL 283
++ R L + G +RLT L E+ N+ + GI EG +L L +C +
Sbjct: 629 SMERVSLVESRRLSFVGHVAAARLTELSVENSNISNVGINAVLEGCYSLQRLSLQQCPAI 688
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLA 342
SD L+ +S L L+ + L T +S S+ ++A +L+ L + D +TD +
Sbjct: 689 SD-------LQGVSLLPKLQELLLRSTAVSRESVAQIAACENLRRLQISDCADVTDVNI- 740
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L SL L LDL +T GVK + S+L LN
Sbjct: 741 -LCSLQSLVDLDLSKTNVTT------------------------GGVKGLAQCSALKKLN 775
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVTAND 461
LS +C + + L L L + + +T G+ L+ + L +LTL C +VT D
Sbjct: 776 LS-DCRFVTN-INCLGKLPVLRELYLCRTSVTDRGIAGLQHCRQLETLTLTKCSRVTKVD 833
Query: 462 IKRLQSRDLPNLVSF 476
LQ+ LP+L +F
Sbjct: 834 --GLQN-SLPHLETF 845
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 141/289 (48%), Gaps = 6/289 (2%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
S L LT+L SL++ +++ + Y L L ++ C A+ L+ L+A+ L
Sbjct: 221 SGTTALGVLTHLHSLELHSVPLSNELMLYFSQCLSLRHLIIDSCRGLAS-LECLTAIPGL 279
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L+L ++D+G + T+L+ L LD+C + + L L L L +S ++ S
Sbjct: 280 LNLSLLNSPITDEGLLPVRKCTSLQHLTLDNC-VRLRSINCLGSLHRLHTLTVSRNRMPS 338
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
G + L+ L LE + + +L +AG+ L+ L+L +TD G A L + L
Sbjct: 339 EGFKGLANLRGLEVLRFAVLN-RILTLESIAGIQCLRELDLTDNWLTDEGCAFLAHCSQL 397
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
HL L R + S ++R +L++L++ + + + ++ SSL L+L+ ++
Sbjct: 398 EHLKLAYCR-SVSDVRWVRALTSLQTLDLSYTSVLNCFLDSLRSCSSLEELSLAYCKDVV 456
Query: 411 DKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
D + + GL L SL+VS + + +GL + L +L+L C+ A
Sbjct: 457 D--ISFVVGLNCLKSLDVSGTCVDESGLSSVGKCPALTNLSLRECRQVA 503
>gi|434386116|ref|YP_007096727.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
gi|428017106|gb|AFY93200.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
Length = 365
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 143/302 (47%), Gaps = 49/302 (16%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L S+DLS S V D L L + NLQS I IS + L+ L+ LT L
Sbjct: 95 NLQSIDLSESAVVD--LQPLAELVNLQS------ISISRTSVSDLQPLAKLTKLKQVSAA 146
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ A L N+ L+L + +VN++ L KL L I + +++PL+
Sbjct: 147 ETPLSNIQPLANLTNIEFLNLSK-----SKVVNIEPLAKLTKLRIIFLEQTGVENLQPLA 201
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
LTNL SL + +K I L GL LT NL+ YL+ NR
Sbjct: 202 NLTNLSSLYLKKNK-----IGNLTGLNNLT--NLKE-----------------LYLSENR 237
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
D + + LTNL+ L LDS I D L+ LT L + L L ++ S L L
Sbjct: 238 I----DNIQPLANLTNLQLLWLDSNQIDD--LLPLTNLKKINFLILDKNKI--SNLEPLV 289
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L NLE++ LS IS+ ++ L+ L +LK+L + QI+D +++L +L L ++L G
Sbjct: 290 DLNNLETLYLSNNKISN--VKPLSKLVNLKTLLIRNNQISD--ISSLVNLPKLEGIELNG 345
Query: 358 AR 359
R
Sbjct: 346 NR 347
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 125/265 (47%), Gaps = 21/265 (7%)
Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
+ ++ A +NL +DL + L L L+ L+S++I + SD++PL+ LT
Sbjct: 85 KNIEPIADFVNLQSIDLSESAVV--DLQPLAELVNLQSISISRTSV---SDLQPLAKLTK 139
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK Q+S ++ S I L L + LNL V ++ L+ L L + L + +
Sbjct: 140 LK--QVSAAETPLSNIQPLANLTNIEFLNLSKSKV--VNIEPLAKLTKLRIIFLEQTGV- 194
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ + + LTNL SL L IG+ L L L NLK L LS+ ++ ++ L+ LTN
Sbjct: 195 -ENLQPLANLTNLSSLYLKKNKIGN--LTGLNNLTNLKELYLSENRID--NIQPLANLTN 249
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
L+ + L I D L L L + L LD +I++ L L L L L L +I
Sbjct: 250 LQLLWLDSNQIDD--LLPLTNLKKINFLILDKNKISN--LEPLVDLNNLETLYLSNNKI- 304
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTD 386
S L NL++L I ++D
Sbjct: 305 -SNVKPLSKLVNLKTLLIRNNQISD 328
>gi|430746594|ref|YP_007205723.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
gi|430018314|gb|AGA30028.1| hypothetical protein Sinac_5912 [Singulisphaera acidiphila DSM
18658]
Length = 170
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LK L + +T+VG +G+ L+ + ++L T I+D L+ L G+ SL L+L A IT
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D GLA L + L LDL +I+D AG++H+K L
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISD------------------------AGIEHLKGLKG 118
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
L ++ N+TD+++ +I G L ++N S+IT AG L+ +
Sbjct: 119 LDIV----ETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
NL+GCP LSA+ L L + ++ D G + + + L+L I D GL
Sbjct: 6 NLQGCPNANGI--RLSAV-VLKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGL 62
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L G+ +L L L T + +GL HL+G+ LE ++L +T ISD + L G LK L
Sbjct: 63 KPLKGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGL 119
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++ +TD + + L ++ G++IT++G LR K L L+I G
Sbjct: 120 DIVETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR--KMLPKLDIDHG 170
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 254 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L+ L +++ +GD G+ L + L+L T++ +GL+ L G+ +L ++L TGI+
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 314 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 373
D L LAG+ L+ L+L +I+D G+ L L G LD+ +TD + F+
Sbjct: 83 DAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG---LDIVETNVTDRSIPIIGGFER 139
Query: 374 LRSLEICGGGLTDAGVKHIKDL 395
L ++ G +T+AG + ++ +
Sbjct: 140 LEAINPRGSKITEAGEEQLRKM 161
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
LK L I ++V D+G+A L + L+L G +T A L L + SL +L+L
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR----- 77
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+ GI D GL +L G+ L+ L+L T++ +G+ HL GL
Sbjct: 78 -------------------ATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKGLKG 118
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
L+ + T ++D S+ + G L+++N +IT+ G L + L LD+
Sbjct: 119 LDIVE---TNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM--LPKLDI 167
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 25/122 (20%)
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
LK L ++ ++ D G+A L S G+ LDL G +ITD+G L+ K+L L + G+T
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGIT 82
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
DAG+ H+ +G+ L L++ ++I+ AG+ HLK LK
Sbjct: 83 DAGLAHL-------------------------AGMDRLERLDLGYTKISDAGIEHLKGLK 117
Query: 446 NL 447
L
Sbjct: 118 GL 119
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 77 LKDCSNLQSLDFNFCI---------QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127
L+ C N + + + ++ D G+ L + L IT G+K
Sbjct: 7 LQGCPNANGIRLSAVVLKRLAIENTRVGDAGMAQLASHPGIAELDLH-GTKITDAGLKPL 65
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
G+ +LV L L GL +L G+ +LE L++ + I+D+ ++ L G LK L I
Sbjct: 66 KGMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTK-ISDAGIEHLKG---LKGLDI 121
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ VTD I + G ++L +N G +T A + L +
Sbjct: 122 VETNVTDRSIPIIGGFERLEAINPRGSKITEAGEEQLRKM 161
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N + GM A + +LDL GL LKG+ L L+++ ITD+ +
Sbjct: 30 NTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLR-ATGITDAGLAH 88
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L+G+ L+ L + +K++D+GI +LKGL+ L ++ VT + + L +N
Sbjct: 89 LAGMDRLERLDLGYTKISDAGIEHLKGLKGLDIVETN---VTDRSIPIIGGFERLEAINP 145
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLD 260
++++ G E+ ++ L L++D
Sbjct: 146 RGSKITEAGEEQLRKM--LPKLDID 168
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D+ M L+ + L + +K+TD+G+ LKG++ L L+L +T A L L+ +
Sbjct: 33 VGDAGMAQLASHPGIAELDLHGTKITDAGLKPLKGMKSLVHLSLRATGITDAGLAHLAGM 92
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L+L ++SD G E L L+ L++ + D + + G L+ + ++
Sbjct: 93 DRLERLDLGYTKISDAGIE---HLKGLKGLDIVETNVTDRSIPIIGGFERLEAINPRGSK 149
Query: 288 VGSSGLRHL 296
+ +G L
Sbjct: 150 ITEAGEEQL 158
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V D M +AS + +DL G+ +TD+ GL+ L+
Sbjct: 33 VGDAGMAQLASH-PGIAELDLHGTKITDA-------------------------GLKPLK 66
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
G+ +L LS R IT G+ AG+ L +LDL G+ +LKG L+ L+I
Sbjct: 67 GMKSLVHLSL-RATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLKG---LKGLDIV 122
Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
N +TD + + G L+++ SK+T++G L+
Sbjct: 123 ETN-VTDRSIPIIGGFERLEAINPRGSKITEAGEEQLR 159
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 409
L L + R+ D+G A L + + L++ G +TDAG+K +K
Sbjct: 23 LKRLAIENTRVGDAGMAQLASHPGIAELDLHGTKITDAGLKPLK---------------- 66
Query: 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
G+ LV L++ + IT AGL HL + L L L K++ I+ L+
Sbjct: 67 ---------GMKSLVHLSLRATGITDAGLAHLAGMDRLERLDLGYTKISDAGIEHLK 114
>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134]
gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]
Length = 1165
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 174/369 (47%), Gaps = 71/369 (19%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
LL +DLS + + D L LK ++LQSL QISD L L+ L +L L R+N
Sbjct: 226 LLKLDLSNNQLDD--LHPLKSLNSLQSLVLRNN-QISD--LTPLQALHSL-QLIVLRDNP 279
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-------- 170
+T + L NL LDL R +I L L+ L L+S++++ N I D
Sbjct: 280 VT--DLTPLQSLRNLQSLDL-RNNQI-SDLTPLQNLSSLQSIDLR-HNPINDLLPLQNLP 334
Query: 171 ------------SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
+D+ PL L NL+S+ +S ++++D + + L LQ + L N
Sbjct: 335 NLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDLTPLQNLSNLQSIDLSN------- 387
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN 277
+ ++ L SL YL NLES++L I D L L L +
Sbjct: 388 ----NQVNHLASLQYL------------------PNLESIDLSDNQIND--LAPLQNLGD 423
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
L+ ++LS+ Q+ L L L NLESI+LS ISD L L L SL+S+NL Q++
Sbjct: 424 LQSIDLSNNQI--HDLTPLQNLPNLESIDLSDNQISD--LTPLQNLGSLQSINLRNNQVS 479
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
D L+ L +L L ++L +I+D A L+ +L+S+++ + I +
Sbjct: 480 D--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSIDLRDNQIEVFPEHLITNCPQ 535
Query: 398 LTLLNLSQN 406
LT L+L N
Sbjct: 536 LTSLHLYHN 544
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 207/444 (46%), Gaps = 66/444 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT---SLSF 113
L ++DLS + ++D L L++ +NLQ LD +SD + L L NL S+
Sbjct: 114 PELRAIDLSDNRISD--LKPLQNLANLQMLD------MSDNRVADLTPLQNLPGLQSIVL 165
Query: 114 RRNNAITAQGMKA----------FAGLINLVKLDLERCTRI----HGGLVNLKGLMKLES 159
+N ++ + + +L L C + H + +L L KL
Sbjct: 166 SKNKVRDLTPLQHLTGLHTLLLHYNKIGDLAPLQHLTCLTMLSLHHNKISDLAPLQKLRG 225
Query: 160 L-NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
L + N D D+ PL L +L+SL + ++++D + L+ L L L+ L PVT
Sbjct: 226 LLKLDLSNNQLD-DLHPLKSLNSLQSLVLRNNQISD--LTPLQALHSLQLIVLRDNPVTD 282
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL--- 275
L L +L +L L+L Q+SD L++L+S++L I D +
Sbjct: 283 --LTPLQSLRNLQSLDLRNNQISD--LTPLQNLSSLQSIDLRHNPINDLLPLQNLPNLQS 338
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+LK ++D L L L NLESI+LS ISD L L LS+L+S++L Q
Sbjct: 339 IDLKYNHIND-------LAPLQNLPNLESIDLSDNQISD--LTPLQNLSNLQSIDLSNNQ 389
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
+ LA+L L L +DL +I D A L+N +L+S+++ I DL
Sbjct: 390 VN--HLASLQYLPNLESIDLSDNQIND--LAPLQNLGDLQSIDLSNN--------QIHDL 437
Query: 396 SSLTLLNLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ L L ++ +L+D L + L L S+N+ N++++ L L+ L +L+++ L
Sbjct: 438 TPLQNLPNLESIDLSDNQISDLTPLQNLGSLQSINLRNNQVSD--LSPLQALHDLQAINL 495
Query: 453 ESCKVTANDIKRLQSRDLPNLVSF 476
+++ D+ LQ LP+L S
Sbjct: 496 SDNQIS--DLAPLQK--LPHLKSI 515
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 49/271 (18%)
Query: 57 SSLLSVDLSGSDVTDSGLI--------------HLKDCSNLQSLDFNFCIQISDGGLEHL 102
SSL S+DL + + D + H+ D + LQ+L I +SD + L
Sbjct: 312 SSLQSIDLRHNPINDLLPLQNLPNLQSIDLKYNHINDLAPLQNLPNLESIDLSDNQISDL 371
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
L NL+ NL +DL H L +L+ L LES+++
Sbjct: 372 TPLQNLS----------------------NLQSIDLSNNQVNH--LASLQYLPNLESIDL 407
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
N I +D+ PL L +L+S+ +S +++ D + L+ L L ++L ++ L
Sbjct: 408 S-DNQI--NDLAPLQNLGDLQSIDLSNNQIHD--LTPLQNLPNLESIDLSDNQISD--LT 460
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L LGSL +NL Q+SD L +L+++NL I D L L L +LK ++
Sbjct: 461 PLQNLGSLQSINLRNNQVSD--LSPLQALHDLQAINLSDNQISD--LAPLQKLPHLKSID 516
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGIS 313
L D Q+ ++ L S++L I
Sbjct: 517 LRDNQIEVFPEHLITNCPQLTSLHLYHNPIQ 547
>gi|283779449|ref|YP_003370204.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
gi|283437902|gb|ADB16344.1| hypothetical protein Psta_1669 [Pirellula staleyi DSM 6068]
Length = 633
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+L R ++D G + + L+ L+L + D GL L L L L L T + S+
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ ++ L NLE ++LS I+D L K+A L LK L L +TD GLA L SL L
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 353 LDLFGARITDSGAAYLRN 370
LDL G R++ A L++
Sbjct: 598 LDLRGTRVSADAAEKLKS 615
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%)
Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
+TD + L LK L +S +KVTD+G+ L L +L L LEG +++A + +++
Sbjct: 483 TTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSASIPAIA 542
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L +L L+L++ ++DD K + L L+ L L + D GL L L NL+ L+L
Sbjct: 543 RLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEMLDLRG 602
Query: 286 TQVGSSGLRHL 296
T+V + L
Sbjct: 603 TRVSADAAEKL 613
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
L+L + D+GL L LK L+LS T+V +GL L LT L + L T IS S
Sbjct: 478 LSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQLDQLTQLNQLFLEGTAISSAS 537
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ +A L +L+ L+L I D LA + +L L L L G +TD+G A L + +NL
Sbjct: 538 IPAIARLRNLEELDLSKVNIADDDLAKIATLKQLKVLYLVGTPVTDAGLAKLVSLQNLEM 597
Query: 377 LEICGGGLT-DAGVK---HIKDLSSLTL 400
L++ G ++ DA K IK L+++ L
Sbjct: 598 LDLRGTRVSADAAEKLKSRIKSLANVLL 625
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
F +SD L ++ +L+L +TD GLA L L LDL ++TD+G L
Sbjct: 458 FLDVSDQDLLACVSPATTINLSLGRTTVTDQGLAQLGQFKRLKWLDLSLTKVTDTGLEQL 517
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
L L + G ++ A + I L +L L+LS+ N+ D L I+ L L L +
Sbjct: 518 DQLTQLNQLFLEGTAISSASIPAIARLRNLEELDLSK-VNIADDDLAKIATLKQLKVLYL 576
Query: 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
+ +T AGL L L+NL L L +V+A+ ++L+SR
Sbjct: 577 VGTPVTDAGLAKLVSLQNLEMLDLRGTRVSADAAEKLKSR 616
>gi|386333502|ref|YP_006029672.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
gi|334195951|gb|AEG69136.1| type III effector gala6 protein [Ralstonia solanacearum Po82]
Length = 535
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 159/349 (45%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 168 LVRLNLSGNRIGTVEARLLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNASRN-G 225
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L LN+ N I + L+
Sbjct: 226 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNR-NRIDVPGARALAA 284
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 285 CKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNN 344
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + + T+L +L+ +S GIG G L L L L VG +G +
Sbjct: 345 NIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDAGAQAWLA 404
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L++ I DTG A + LT L+L
Sbjct: 405 NTKLVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNAIKDTGARAFAANRTLTTLNLSSN 464
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 465 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 513
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 141/296 (47%), Gaps = 5/296 (1%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+L S + V G+ L + LT L+L + A L A L LN+NR ++
Sbjct: 218 TLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNRIDVP 277
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G + L SL++ IGD G+ L L L + VG+ G+R L+ L
Sbjct: 278 GARALAACKTLTSLDIGGNSIGDAGVEALLAHTQLTTLNVERAGVGAHGVRALADCKTLT 337
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
S+ + I D + LA +SL +L+ ++ I G AL + T LT L+L + D+
Sbjct: 338 SLRIDNNNIGDEGAKTLAASTSLTALHSESNGIGLAGAKALAANTMLTTLNLGHNSVGDA 397
Query: 364 GA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
GA A+L N K L SL + GL+DAG + +LT L++ N + D +
Sbjct: 398 GAQAWLANTK-LVSLSVRRNGLSDAGAIRLAASKTLTTLDVGDNA-IKDTGARAFAANRT 455
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR-LQSRDLPNL-VSF 476
L +LN+S++ I +AG R L L SL L + ++ ++ L +R L +L VSF
Sbjct: 456 LTTLNLSSNEIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSF 511
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 5/257 (1%)
Query: 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
AS+ ++L+V+ + DV G L C L SLD I D G+E L + LT+L+
Sbjct: 260 ASERLTMLNVNRNRIDV--PGARALAACKTLTSLDIGGN-SIGDAGVEALLAHTQLTTLN 316
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
R + A G++A A L L ++ G L L +L+ + N I +
Sbjct: 317 VERA-GVGAHGVRALADCKTLTSLRIDNNNIGDEGAKTLAASTSLTALHSE-SNGIGLAG 374
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K L+ T L +L + + V D+G KL L++ ++ A L+A +L
Sbjct: 375 AKALAANTMLTTLNLGHNSVGDAGAQAWLANTKLVSLSVRRNGLSDAGAIRLAASKTLTT 434
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L++ + D G F+ L +LNL S IG+ G L L L+L + ++ +G
Sbjct: 435 LDVGDNAIKDTGARAFAANRTLTTLNLSSNEIGNAGARALAANTRLASLDLRNNRMLEAG 494
Query: 293 LRHLSGLTNLESINLSF 309
+R L L S+ +SF
Sbjct: 495 VRALLVNRTLSSLGVSF 511
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 98/252 (38%), Gaps = 50/252 (19%)
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
+TAA + LS L L LNL+ ++ + L L++ CGIG E L
Sbjct: 155 ITAAGIAHLSRL-PLVRLNLSGNRIGTVEARLLANHPTLTELDVSRCGIGPEEARALAAS 213
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
L L S VG G+R L L S++LS G+ D ++L L LN++ +
Sbjct: 214 ARLTTLNASRNGVGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTMLNVNRNR 273
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
I D+ GAR L K L SL+I G + DAGV
Sbjct: 274 I-----------------DVPGAR-------ALAACKTLTSLDIGGNSIGDAGV------ 303
Query: 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455
E + T L +LNV + + + G+R L K L SL +++
Sbjct: 304 -------------------EALLAHTQLTTLNVERAGVGAHGVRALADCKTLTSLRIDNN 344
Query: 456 KVTANDIKRLQS 467
+ K L +
Sbjct: 345 NIGDEGAKTLAA 356
>gi|196229410|ref|ZP_03128275.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
gi|196226642|gb|EDY21147.1| hypothetical protein CfE428DRAFT_1440 [Chthoniobacter flavus
Ellin428]
Length = 299
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
D+ G+ D + GL +LK L + +GL+ L+GL LE ++ + SD +R
Sbjct: 57 DNKGLTDADYRQIRGLDHLKMLGCG-AGLDDAGLKALAGLPALEQLSTNGMTASDEGVRT 115
Query: 320 LAGLSSLKSLNL--DARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRS 376
LA +L+S+ + T TGLAAL ++ L L + G+ D G A + +L+
Sbjct: 116 LAACKALRSIAFFHPGKSFTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKE 175
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQN------CNLTDKTLELISGLTGLVSLNVSN 430
G T G++ ++ L L L + Q ++D T+ ++G+ L L++
Sbjct: 176 FRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQE 235
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN 472
+R+T L LK L NL+ LTL+ + I L+ ++LP
Sbjct: 236 ARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELR-QELPK 276
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 31/223 (13%)
Query: 157 LESLNIKWCNC-ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
L+ L + C + D+ +K L+GL L+ L + +D G+ L
Sbjct: 72 LDHLKMLGCGAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTL--------------- 116
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL-DSCGIGDEGLVNLTG 274
AAC AL S+ + + + + G + + NLE L + S GD+GL +
Sbjct: 117 --AAC----KALRSIAFFHPGKS-FTGTGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQ 169
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESI-------NLSFTGISDGSLRKLAGLSSLK 327
+ +LK G+R L L L+S+ N +SD ++ +AG+ SL+
Sbjct: 170 IAHLKEFRTWHAGATVEGIRKLQALKELKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLE 229
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
L+L ++T L L L L L L G I ++ A LR
Sbjct: 230 MLSLQEARLTLPALGKLKQLPNLKRLTLDGIDIPEAQIAELRQ 272
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 20/281 (7%)
Query: 52 IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
A + + ++ G+ VT++ + L F ++D +RGL +L L
Sbjct: 26 FAGDPAVVAALQAKGAQVTET-------AGEITGLAFKDNKGLTDADYRQIRGLDHLKML 78
Query: 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITD 170
+ G+KA AGL L +L T G+ L L S+ T
Sbjct: 79 GC--GAGLDDAGLKALAGLPALEQLSTNGMTASDEGVRTLAACKALRSIAFFHPGKSFTG 136
Query: 171 SDMKPLSGLTNLKSLQISCS-KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+ + L+ + NL+ L ++ S + D G+A + + L T + L AL
Sbjct: 137 TGLAALAAIPNLERLTVAGSTEFGDDGLAAVAQIAHLKEFRTWHAGATVEGIRKLQALKE 196
Query: 230 LFYLNLNR-------CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
L L + + +SDD + + +LE L+L + L L L NLK L
Sbjct: 197 LKSLTIGQRLANKPPVMVSDDTVAAVAGMPSLEMLSLQEARLTLPALGKLKQLPNLKRLT 256
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
L + + + L L ++ +T ++ + +++ GL
Sbjct: 257 LDGIDIPEAQIAELR--QELPKADIKWTAPNEAARKRIDGL 295
>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa]
gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]
Length = 1126
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 204/423 (48%), Gaps = 62/423 (14%)
Query: 53 ASQG-SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI---QISDGGLEHLRGLSNL 108
AS G S+L S+DLS + +T SGL L S LQ L+ N + Q +D + G S+L
Sbjct: 131 ASTGFSALKSLDLSDNQLTGSGLKVLS--SRLQKLE-NLHLSGNQCNDSIFSSITGFSSL 187
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
SL N +T G+K + L KLE+L++ C
Sbjct: 188 KSLDLSY-NELTGSGLKVLS-----------------------SRLQKLENLHLSGNQC- 222
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSAL 227
DS ++G ++LKSL +S ++VT SG+ L L+KL L+L + SLS
Sbjct: 223 NDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGF 282
Query: 228 GSLFYLNLNRCQL--SDDGCEKF----SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
SL YLNL++ QL S G F S L NLE L+L S + + L +L+G LK L
Sbjct: 283 SSLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSL 342
Query: 282 ELSDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDT 339
+LSD GS+G L+GL NLE++ L T + L L L SLK+L+ T
Sbjct: 343 DLSDNMFTGSTG---LNGLRNLETLYLGNTDFKESILIESLGALPSLKTLDASYSNFTHF 399
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK------ 393
G L + + L + L + + A++LRN L +L++ L+ AGV
Sbjct: 400 G-KGLCNSSSLEEVFLDDSSLP---ASFLRNIGPLSTLKV----LSLAGVDFNSTLPAQG 451
Query: 394 --DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSL 450
+L +L L LS N NL + L+ L L++S++++ + +L LK LRSL
Sbjct: 452 WCELKNLEELYLSGN-NLKGVLPPCLGNLSFLQILDLSHNQLEGNIAFSYLSHLKQLRSL 510
Query: 451 TLE 453
+++
Sbjct: 511 SIK 513
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 13/252 (5%)
Query: 211 LEGCPVTA-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-RLTNLESLNLDSCGIGDEG 268
E P A A + + +L L+L+ QL+ G + S RL LE+L+L D
Sbjct: 118 FEVLPSKAGAFFHASTGFSALKSLDLSDNQLTGSGLKVLSSRLQKLENLHLSGNQCNDSI 177
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAGLSSLK 327
++TG +LK L+LS ++ SGL+ LS L LE+++LS +D + G SSLK
Sbjct: 178 FSSITGFSSLKSLDLSYNELTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLK 237
Query: 328 SLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
SL+L ++T +GL L+S L L +LDL + DS + L F +L+ L + LT
Sbjct: 238 SLDLSYNEVTGSGLKVLSSKLKKLENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTG 297
Query: 387 A--GVKHIKDLSS----LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 440
+ G+ + L S L L+L N L + L +SG + L SL++S++ T G
Sbjct: 298 SSTGINSFQVLVSGLRNLEELHLYSN-KLNNNILSSLSGFSTLKSLDLSDNMFT--GSTG 354
Query: 441 LKPLKNLRSLTL 452
L L+NL +L L
Sbjct: 355 LNGLRNLETLYL 366
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 155/345 (44%), Gaps = 48/345 (13%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN 107
+ V++S+ L ++ LSG+ DS + S+L+SLD ++ +++ GL+ L L
Sbjct: 202 LKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSYN-EVTGSGLKVLSSKLKK 260
Query: 108 LTSLSFRRNN----AITAQGMKAFAGLINLVKLDLE-RCTRIHGGLVNLKGLMKLESLNI 162
L +L N ++ + +NL + L T I+ V + GL LE L++
Sbjct: 261 LENLDLSDNQCNDSIFSSLSGFSSLKYLNLSQNQLTGSSTGINSFQVLVSGLRNLEELHL 320
Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACL 221
+ N + ++ + LSG + LKSL +S + T S G+ L+ L+ L L N + + +
Sbjct: 321 -YSNKLNNNILSSLSGFSTLKSLDLSDNMFTGSTGLNGLRNLETLYLGNTDF--KESILI 377
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+SL AL SL L+ + + G GLCN L
Sbjct: 378 ESLGALPSLKTLDASYSNFTHFG----------------------------KGLCNSSSL 409
Query: 282 E---LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQ 335
E L D+ + +S LR++ L+ L+ LS G+ S G L +L+ L L
Sbjct: 410 EEVFLDDSSLPASFLRNIGPLSTLKV--LSLAGVDFNSTLPAQGWCELKNLEELYLSGNN 467
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEI 379
+ L +L+ L LDL ++ + A +YL + K LRSL I
Sbjct: 468 LKGVLPPCLGNLSFLQILDLSHNQLEGNIAFSYLSHLKQLRSLSI 512
>gi|290979200|ref|XP_002672322.1| predicted protein [Naegleria gruberi]
gi|284085898|gb|EFC39578.1| predicted protein [Naegleria gruberi]
Length = 318
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 16/241 (6%)
Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
++SL +S S++T SGI+ L+ L L+L + + + LS+L +L L LN ++
Sbjct: 1 MESLNLSNSEITSSGISQFGILKNLQELDLSSNLINSEGANYLSSLYNLTSLALNDNSIT 60
Query: 242 DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 301
+G FS LTNL L LD+ IG G L+ N+K L LS+ + GL + L +
Sbjct: 61 GEGLRNFSNLTNLTELFLDNNNIGSVGANYLSSNTNIKFLTLSNNSIADEGLENFGNLKS 120
Query: 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARI 360
L +NL+F + G L L+ LK L++ +TD L + LDL
Sbjct: 121 LIHLNLNFNNVQRG-LIYLSECKLLKQLDIQHNNLTDQELIDFFDKELSIEELDL----- 174
Query: 361 TDSGAAYLRNFKNL---RSLEICGGG----LTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
+++ ++FKN+ R L I G L D + H+ L+ LTL + NC +TDK
Sbjct: 175 SENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLASLNLLTL--RANNCGITDKG 232
Query: 414 L 414
L
Sbjct: 233 L 233
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 36/289 (12%)
Query: 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
S++LS S++T SG+ NLQ LD + + I+ G +L L NLTSL+ +N+IT
Sbjct: 3 SLNLSNSEITSSGISQFGILKNLQELDLSSNL-INSEGANYLSSLYNLTSLAL-NDNSIT 60
Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
+G++ F+ L NL +L L+ N I LS T
Sbjct: 61 GEGLRNFSNLTNLTELFLDN-------------------------NNIGSVGANYLSSNT 95
Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
N+K L +S + + D G+ L+ L LNL V + LS L L++ L
Sbjct: 96 NIKFLTLSNNSIADEGLENFGNLKSLIHLNLNFNNVQRGLI-YLSECKLLKQLDIQHNNL 154
Query: 241 SDDG-CEKFSRLTNLESLNL-DSCGIGDEGLVNLTGLCNLKCLEL-SDTQVGSSGLRHLS 297
+D + F + ++E L+L ++ + + N+ L L + S+ ++G L HL+
Sbjct: 155 TDQELIDFFDKELSIEELDLSENKKLSGKSFKNICKQRKLSILNIGSNPKLGDLSLSHLA 214
Query: 298 GLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLA 342
L NL ++ + GI+D L K + +S K LNL + T +A
Sbjct: 215 SL-NLLTLRANNCGITDKGLVKFLQENSNRNSSKRLNLYLEETPFTNIA 262
>gi|421897504|ref|ZP_16327872.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
gi|206588710|emb|CAQ35673.1| type III effector protein gala5 [Ralstonia solanacearum MolK2]
Length = 533
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 3/349 (0%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 166 LVRLNLSGNRIGPVEARLLANHPTLTELDVSRC-GIGPEEARALAASARLTTLNASRN-G 223
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 224 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALAD 282
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 283 CKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNN 342
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + + T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 343 NIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLA 402
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 403 NTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN 462
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 463 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 511
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 170/382 (44%), Gaps = 7/382 (1%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+ L L L+ LD + C I+ G+ HL L L L+ N I + A
Sbjct: 130 TDADLAGLPPT--LKELDLSRCRGGITAAGIAHLSHLP-LVRLNLS-GNRIGPVEARLLA 185
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LD+ RC L +L +LN N + ++ L L SL +S
Sbjct: 186 NHPTLTELDVSRCGIGPEEARALAASARLTTLNASR-NGVGGEGVRALVDCKTLTSLDLS 244
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D+ L ++LT LN+ + +L+ +L L++ + D G E
Sbjct: 245 ENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEAL 304
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
L +LN++ G+G G+ L L L + + +G G + L+ T+L +++
Sbjct: 305 LANAQLTTLNVERAGVGAHGVQALADSKTLTSLRIDNNNIGDEGAKTLAASTSLTTLHSE 364
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI + LA + L +LNL I D G A + T L L + ++D+GA L
Sbjct: 365 SNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRL 424
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L+ + DAG + + +LT L++S N + + ++ T L SL++
Sbjct: 425 AASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDL 483
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
N+R+ AG+R L + L SL
Sbjct: 484 RNNRMLEAGVRALLVNRTLSSL 505
>gi|326201424|ref|ZP_08191295.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
gi|325988024|gb|EGD48849.1| Dockerin type 1 [Clostridium papyrosolvens DSM 2782]
Length = 1098
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 214/477 (44%), Gaps = 69/477 (14%)
Query: 10 IFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV 69
I +L + + F D L+ + G +N D++ + SS+ S+ ++
Sbjct: 18 ILTQLFVHNAFADSDIVTFADPNLEAVVRG---AINKPTGDILKTDVSSITSIIAENKNI 74
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
+ L ++ +NL L + +ISD + L GL++L L+ ++N + A AG
Sbjct: 75 NN--LTGIECLTNLTMLSLSKN-KISD--VTPLAGLTSLKYLALYQSNI---SNINALAG 126
Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LINL LDL + + LK + KL L + W N +D+ LS LTNL+ LQ+ C
Sbjct: 127 LINLEYLDLGMNSV--SDISALKNMTKLTYLELSWNNI---TDISALSKLTNLQYLQLGC 181
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+++ D I+ + L KL L+L ++ + LS L +L YL+LN +S+ +
Sbjct: 182 NRIVD--ISPISNLTKLKTLHLFYNRISD--ISGLSGLKTLTYLHLNSNNVSN--INPLN 235
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
LT L L+L I D +N L + L+LS ++ + + LS LT+L + L
Sbjct: 236 GLTMLSYLDLGFNKITDISALN--KLTKITDLDLSYNKI--TNINVLSNLTSLNDLKLEN 291
Query: 310 TGISDGSLRKLAGLSS---LKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGA 365
I++ S + G+ S K NL+ D LA A+ G D+
Sbjct: 292 NPINNYS--PITGIISKLTKKDFNLEPISFPDADLAKAVCHQLGKNSEDM---------- 339
Query: 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--------KTLELI 417
+ +E + DAG IK LS + Q CNL D + I
Sbjct: 340 --------IYKIEAPQITVLDAGNMEIKSLSG-----IEQLCNLKDLYLAGNELDNINPI 386
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA----NDIKRLQSRDL 470
S LT L +LN+ ++I+ L L+ L NL+ L L K++ +D+ L++ DL
Sbjct: 387 SALTSLEALNLEKNQISD--LNVLRNLHNLKYLILRDNKISDITPLSDLSSLKTLDL 441
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 180/377 (47%), Gaps = 47/377 (12%)
Query: 71 DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130
D G+ + D S L+++ +++S + + LS LT+L + + + + + +
Sbjct: 134 DLGMNSVSDISALKNMTKLTYLELSWNNITDISALSKLTNLQYLQ---LGCNRIVDISPI 190
Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
NL KL + + + ++ GL L++L N S++ PL+GLT L L + +
Sbjct: 191 SNLTKL--KTLHLFYNRISDISGLSGLKTLTYLHLNSNNVSNINPLNGLTMLSYLDLGFN 248
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
K+TD I+ L L K+T L+L +T ++ LS L S LN +L ++ +S
Sbjct: 249 KITD--ISALNKLTKITDLDLSYNKITN--INVLSNLTS-----LNDLKLENNPINNYSP 299
Query: 251 LTNLES------LNLDSCGIGDEGLVNLTGLCN------------LKCLELSDTQVGSSG 292
+T + S NL+ D L +C+ ++ +++ G+
Sbjct: 300 ITGIISKLTKKDFNLEPISFPDADLAK--AVCHQLGKNSEDMIYKIEAPQITVLDAGNME 357
Query: 293 LRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 351
++ LSG+ L ++ +L G ++ ++ L+SL++LNL+ QI+D L L +L L
Sbjct: 358 IKSLSGIEQLCNLKDLYLAGNELDNINPISALTSLEALNLEKNQISD--LNVLRNLHNLK 415
Query: 352 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+L L +I+D L + +L++L++ LT+ K+LS L+NL + +L D
Sbjct: 416 YLILRDNKISD--ITPLSDLSSLKTLDLSYNSLTNT-----KNLSK--LVNLYE-LHLDD 465
Query: 412 KTLELISGLTGLVSLNV 428
+ I+GL + L +
Sbjct: 466 NEINDINGLQNITKLKI 482
>gi|290976022|ref|XP_002670740.1| predicted protein [Naegleria gruberi]
gi|284084302|gb|EFC37996.1| predicted protein [Naegleria gruberi]
Length = 213
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 102/201 (50%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT LN+ + +S + L L++ ++ +G + S + L SL++
Sbjct: 1 MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
IG EG ++ + L L++ Q+G G +++S + L S+++ + I + ++
Sbjct: 61 EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
++ L SL++ + QI G ++ + LT LD+ I G+ Y+ K+L SL+I
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
Query: 383 GLTDAGVKHIKDLSSLTLLNL 403
+ G K+I +++ LT L++
Sbjct: 181 EIGVEGAKYISEMNQLTSLDM 201
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 104/211 (49%), Gaps = 1/211 (0%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L SLN+ IG EG ++ + L L++ ++G G +++S + L S+++ +
Sbjct: 1 MKQLTSLNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN 60
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I + ++ ++ L SL++ + QI G ++ + LT LD+ I G+ Y+
Sbjct: 61 EIGVEGSKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISE 120
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L SL+I + G K I ++ SLT L++ N + + + IS + L SL++ +
Sbjct: 121 MNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYN-EIGVEGSKYISEMKSLTSLDIYS 179
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTAND 461
+ I G +++ + L SL + K+ +
Sbjct: 180 NEIGVEGAKYISEMNQLTSLDMLPIKLVQKE 210
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 89/174 (51%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
LN+ ++ +G + S + L SL++ S IG EG ++ + L L++ ++G G
Sbjct: 7 LNIGYNEIGVEGSKFISEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYNEIGVEG 66
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+++S + L S+++ I + ++ + L SL++ +I G ++ + LT
Sbjct: 67 SKYISEMNQLTSLDIHSNQIGVEGAKYISEMKQLTSLDIHYNEIGVEGSKYISEMNQLTS 126
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LD+ +I GA ++ K+L SL+I + G K+I ++ SLT L++ N
Sbjct: 127 LDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSLDIYSN 180
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
S+ L S+D+ +++ G ++ + L SLD ++ +I G +++ ++ LTSL
Sbjct: 23 SEMKQLTSLDIYSNEIGVEGAKYISEMKQLTSLDIHYN-EIGVEGSKYISEMNQLTSLDI 81
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+N I +G K + + L LD IH + ++G
Sbjct: 82 -HSNQIGVEGAKYISEMKQLTSLD------IHYNEIGVEG-------------------S 115
Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
K +S + L SL I +++ G ++ ++ LT L++ + +S + SL L
Sbjct: 116 KYISEMNQLTSLDIHSNQIGVEGAKFISEMKSLTSLDIHYNEIGVEGSKYISEMKSLTSL 175
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNL 259
++ ++ +G + S + L SL++
Sbjct: 176 DIYSNEIGVEGAKYISEMNQLTSLDM 201
>gi|290980890|ref|XP_002673164.1| predicted protein [Naegleria gruberi]
gi|284086746|gb|EFC40420.1| predicted protein [Naegleria gruberi]
Length = 287
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
++G S++ L L++ + I ++G + + L+ L +S TQ+GS G + +SGL
Sbjct: 77 FDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAISGL 136
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359
NL ++N+ ++ I + + G+ L L + +I + L LT L + G
Sbjct: 137 PNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEGNN 196
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELIS 418
I D GA Y+ K L+ L I G + G ++I L LT L++S CN D IS
Sbjct: 197 IGDEGAKYISEAK-LKKLVISNGRIGGEGAQYIAKLHQLTNLDIS--CNNVDTAGARSIS 253
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
L L L++S ++I S G R +K + L
Sbjct: 254 KLPNLTILDISVNKIGSGGARLIKGMTQL 282
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 1/211 (0%)
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+G EG + L L L +S+ Q+G G + +S L L+ + I + + ++ L
Sbjct: 5 LGVEGAKLIGKLSQLTILNISNNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQL 64
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383
L L+L + G+ +++ + LT LD+ +I + GA Y+ K LR L I G
Sbjct: 65 KQLLKLSLMGNYFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQ 124
Query: 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443
+ G K I L +LT LN+ + + + + G+ L L + NSRI + +
Sbjct: 125 IGSEGAKAISGLPNLTNLNIGY-SQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQ 183
Query: 444 LKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
LK+L L +E + K + L LV
Sbjct: 184 LKHLTFLVIEGNNIGDEGAKYISEAKLKKLV 214
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 24/269 (8%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
L +L LNI N I D + +S L LK L +++ ++G++++ L++L L+L G
Sbjct: 16 LSQLTILNIS-NNQIGDLGAQSISELKLLKELFADNNQIGNTGVSFISQLKQLLKLSLMG 74
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ S+S + L L++ ++ + G + + L L + IG EG ++
Sbjct: 75 NYFDNEGVYSISKMDQLTELDIGTNKIDEKGAQYIGEMKQLRKLFISGTQIGSEGAKAIS 134
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL--SFTGISD----GSLRKLAGL---- 323
GL NL L + +Q+G G +++ G+ L + + S G+ G L+ L L
Sbjct: 135 GLPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQLKHLTFLVIEG 194
Query: 324 -------------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ LK L + +I G + L LT+LD+ + +GA +
Sbjct: 195 NNIGDEGAKYISEAKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNNVDTAGARSISK 254
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
NL L+I + G + IK ++ LT
Sbjct: 255 LPNLTILDISVNKIGSGGARLIKGMTQLT 283
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
I K +SGL NL +L I S++ G Y+ G+ +LT L + + + L
Sbjct: 125 IGSEGAKAISGLPNLTNLNIGYSQIGIEGAKYVCGMHQLTQLGIGNSRIGVETAKLIGQL 184
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG---------LVNL------ 272
L +L + + D+G + S L+ L + + IG EG L NL
Sbjct: 185 KHLTFLVIEGNNIGDEGAKYISE-AKLKKLVISNGRIGGEGAQYIAKLHQLTNLDISCNN 243
Query: 273 ---------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ L NL L++S ++GS G R + G+T L +
Sbjct: 244 VDTAGARSISKLPNLTILDISVNKIGSGGARLIKGMTQLTKV 285
>gi|290975572|ref|XP_002670516.1| predicted protein [Naegleria gruberi]
gi|284084076|gb|EFC37772.1| predicted protein [Naegleria gruberi]
Length = 269
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 106/223 (47%)
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+K L + L +L IS K+ D+G + L KLT L + G +++ S+ L +L Y
Sbjct: 38 IKSLILMKELITLDISYQKIGDAGSNTIGQLIKLTKLYVCGNEISSEGAKSIGQLKNLTY 97
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L++ L +G + +L L +L + IGDEG+ +++ L L L Q+GS G
Sbjct: 98 LSVRINHLGSEGAKSIGQLEKLRTLYIAHNQIGDEGIKSISQLKELTTLYTDYNQIGSGG 157
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+ + + L + +S I D + + L L+ L+ +I D G +++ L LT
Sbjct: 158 AKSIGEMKQLTELGISENNIEDEGAKSIGQLIYLRKLSASRCRIGDEGAESISKLINLTK 217
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 395
L + I D GA ++ L+ L+I + G K + ++
Sbjct: 218 LSINTNPIKDEGALHIIKLPQLKKLDITRCSIKSEGKKVLTEM 260
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 5/232 (2%)
Query: 179 LTNLKSLQISCSKVTDSG-----IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
L N+ L S +T SG I L +++L L++ + A +++ L L L
Sbjct: 15 LGNIIELSFSNQTLTQSGVLSNVIKSLILMKELITLDISYQKIGDAGSNTIGQLIKLTKL 74
Query: 234 NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293
+ ++S +G + +L NL L++ +G EG ++ L L+ L ++ Q+G G+
Sbjct: 75 YVCGNEISSEGAKSIGQLKNLTYLSVRINHLGSEGAKSIGQLEKLRTLYIAHNQIGDEGI 134
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +S L L ++ + I G + + + L L + I D G ++ L L L
Sbjct: 135 KSISQLKELTTLYTDYNQIGSGGAKSIGEMKQLTELGISENNIEDEGAKSIGQLIYLRKL 194
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
RI D GA + NL L I + D G HI L L L++++
Sbjct: 195 SASRCRIGDEGAESISKLINLTKLSINTNPIKDEGALHIIKLPQLKKLDITR 246
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 38/258 (14%)
Query: 59 LLSVDLSGSDVTDSG--------LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
++ + S +T SG LI +K+ L +LD ++ +I D G + L LT
Sbjct: 18 IIELSFSNQTLTQSGVLSNVIKSLILMKE---LITLDISYQ-KIGDAGSNTIGQLIKLTK 73
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L + N I+++G K+ L NL L + RI N +
Sbjct: 74 L-YVCGNEISSEGAKSIGQLKNLTYLSV----RI---------------------NHLGS 107
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
K + L L++L I+ +++ D GI + L++LT L + + + S+ + L
Sbjct: 108 EGAKSIGQLEKLRTLYIAHNQIGDEGIKSISQLKELTTLYTDYNQIGSGGAKSIGEMKQL 167
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
L ++ + D+G + +L L L+ C IGDEG +++ L NL L ++ +
Sbjct: 168 TELGISENNIEDEGAKSIGQLIYLRKLSASRCRIGDEGAESISKLINLTKLSINTNPIKD 227
Query: 291 SGLRHLSGLTNLESINLS 308
G H+ L L+ ++++
Sbjct: 228 EGALHIIKLPQLKKLDIT 245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 6/246 (2%)
Query: 132 NLVKLDLERCTRIHGGLVN--LKGLM---KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
N+++L T G+++ +K L+ +L +L+I + I D+ + L L L
Sbjct: 17 NIIELSFSNQTLTQSGVLSNVIKSLILMKELITLDISY-QKIGDAGSNTIGQLIKLTKLY 75
Query: 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+ ++++ G + L+ LT L++ + + S+ L L L + Q+ D+G +
Sbjct: 76 VCGNEISSEGAKSIGQLKNLTYLSVRINHLGSEGAKSIGQLEKLRTLYIAHNQIGDEGIK 135
Query: 247 KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306
S+L L +L D IG G ++ + L L +S+ + G + + L L ++
Sbjct: 136 SISQLKELTTLYTDYNQIGSGGAKSIGEMKQLTELGISENNIEDEGAKSIGQLIYLRKLS 195
Query: 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
S I D ++ L +L L+++ I D G + L L LD+ I G
Sbjct: 196 ASRCRIGDEGAESISKLINLTKLSINTNPIKDEGALHIIKLPQLKKLDITRCSIKSEGKK 255
Query: 367 YLRNFK 372
L K
Sbjct: 256 VLTEMK 261
>gi|430743420|ref|YP_007202549.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
gi|430015140|gb|AGA26854.1| hypothetical protein Sinac_2547 [Singulisphaera acidiphila DSM
18658]
Length = 356
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 169 TDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSA 226
T++ M + L+ L+ L + SK+T++G+ +L+ L +L +++L P VT L L+
Sbjct: 121 TNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAE 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD 285
L SL LNL+ D GI DEGL NL GL L+ L L +
Sbjct: 181 LTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRN 240
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+QV +GL L G+ + + L + + +L L ++ LKSL + + D GL +
Sbjct: 241 SQVTGTGLTALQGMIAMADLKLINSHLE--TLEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
+L L +L L RITD G L + + LR ++ G G+T G
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGVTIMG 341
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 106/250 (42%), Gaps = 58/250 (23%)
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCG---IGDEGLVNLTGLCNLKCLELSD-TQVGSSGL 293
Q ++ RL+ LE LD+ G + + GLV+L L L+ ++LS V GL
Sbjct: 118 SQATNATMSHVGRLSQLE--ELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGL 175
Query: 294 RHLSGLTNLESINLSFT-------------------------GISDGSLRKLAGLSSLKS 328
HL+ LT+LE +NLS GI+D L L GL+ L+
Sbjct: 176 IHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRE 235
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L L Q+T TGL AL + + L L + + L+ L+SL I L D G
Sbjct: 236 LILRNSQVTGTGLTALQGMIAMADLKLINSHLET--LEPLQRMTGLKSLWIHRSPLDDRG 293
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+KH+++L SL L+L ++RIT GL+ L L+ LR
Sbjct: 294 LKHVENLKSLQYLSLE-------------------------DTRITDDGLKSLLDLRGLR 328
Query: 449 SLTLESCKVT 458
+ VT
Sbjct: 329 EVDARGTGVT 338
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
GS +T++GL+HL+ + L+ +D + ++ GL HL L++L L+
Sbjct: 142 GSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELTSLERLNL--------SSPV 193
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
A A L+NL +L R R++GG N ITD + L GLT L+ L
Sbjct: 194 ADADLVNLSRLTNLRLLRLNGG-----------------GNGITDEGLANLKGLTELREL 236
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
+ S+VT +G+ L+G+ + L L + L+ L + L L ++R L D G
Sbjct: 237 ILRNSQVTGTGLTALQGMIAMADLKLINSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGL 294
Query: 246 EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+ L +L+ L+L+ I D+GL +L L L+ ++ T V
Sbjct: 295 KHVENLKSLQYLSLEDTRITDDGLKSLLDLRGLREVDARGTGV 337
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 11/203 (5%)
Query: 270 VNLTGLCNLKCLELSDTQVGS----SGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS 324
++ + L LE D GS +GL HL LT L ++LS G++ L LA L+
Sbjct: 123 ATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGLIHLAELT 182
Query: 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR--ITDSGAAYLRNFKNLRSLEICGG 382
SL+ LNL + + D L L+ LT L L L G ITD G A L+ LR L +
Sbjct: 183 SLERLNLSS-PVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRELILRNS 241
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+T G+ ++ + ++ L L N +L +TLE + +TGL SL + S + GL+H++
Sbjct: 242 QVTGTGLTALQGMIAMADLKLI-NSHL--ETLEPLQRMTGLKSLWIHRSPLDDRGLKHVE 298
Query: 443 PLKNLRSLTLESCKVTANDIKRL 465
LK+L+ L+LE ++T + +K L
Sbjct: 299 NLKSLQYLSLEDTRITDDGLKSL 321
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
G++ T++ +++ L L+ GG LT+AG+ H++ L+ L +++LS +T K L
Sbjct: 116 LGSQATNATMSHVGRLSQLEELDATGGSKLTNAGLVHLQSLTRLRMVDLSLLPGVTGKGL 175
Query: 415 ELISGLTGLVSLNVSNS-------------------------RITSAGLRHLKPLKNLRS 449
++ LT L LN+S+ IT GL +LK L LR
Sbjct: 176 IHLAELTSLERLNLSSPVADADLVNLSRLTNLRLLRLNGGGNGITDEGLANLKGLTELRE 235
Query: 450 LTLESCKVTANDIKRLQ 466
L L + +VT + LQ
Sbjct: 236 LILRNSQVTGTGLTALQ 252
>gi|290991352|ref|XP_002678299.1| predicted protein [Naegleria gruberi]
gi|284091911|gb|EFC45555.1| predicted protein [Naegleria gruberi]
Length = 383
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 149/311 (47%), Gaps = 18/311 (5%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
NL+SLD +I +E++ L NLT+ S R +N I + ++ + L L+
Sbjct: 65 NLKSLDVGLVQEICYENVEYISELQNLTTFSIRYSN-IGRKHLQIIGEMSQLTDLN---- 119
Query: 142 TRIHGGLVN----LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
I G +N ++ L ++ SL+ C+ + D + P+ L+ L +S + +T G
Sbjct: 120 --ISGNPINSLLPIRPLTRITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGC 177
Query: 198 AYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSDDGCEKFS-RLTNL 254
++ + L+ L+L + + LS + L YL++ N +++ +G + S LTNL
Sbjct: 178 MFISEKFPNLSHLSLNETRICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNL 237
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGI 312
LN+ S + DEGL+ L L+ L + Q+ SG+ S L+ ++LS I
Sbjct: 238 THLNISSNNVTDEGLMMACDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNI 297
Query: 313 SDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRN 370
+ + L L++LK L L ITD + + + L +LD+ +TD Y+
Sbjct: 298 TSLCTQYLCTKLTNLKKLYLAGVSITDEDVKLICQCMKLLIYLDVSWNNVTDKSLEYVIA 357
Query: 371 FKNLRSLEICG 381
++LR +++ G
Sbjct: 358 SESLREVDVNG 368
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 156/353 (44%), Gaps = 46/353 (13%)
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
TSLS+R +A ++ LI V ++E LV+ L L+SL++ I
Sbjct: 29 TSLSYR--DACLIAKFESLEELIGEVGDEME-------ALVDY--LPNLKSLDVGLVQEI 77
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
+++ +S L NL + I S + + + + +LT LN+ G P+ + L + L
Sbjct: 78 CYENVEYISELQNLTTFSIRYSNIGRKHLQIIGEMSQLTDLNISGNPINS--LLPIRPLT 135
Query: 229 SLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDT 286
+ L+ C L DDG L+ LNL S GI EG + ++ NL L L++T
Sbjct: 136 RITSLSAADCSFLGDDGIYPIVNFKGLQKLNLSSNGITWEGCMFISEKFPNLSHLSLNET 195
Query: 287 QVGSSGLRHLS--------------------------GLTNLESINLSFTGISDGSLRKL 320
++ ++ LS LTNL +N+S ++D L
Sbjct: 196 RICDGAIKRLSKMKQLTYLDVGNNAKITMEGIKLISNNLTNLTHLNISSNNVTDEGLMMA 255
Query: 321 AGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL-RNFKNLRSL 377
L L+ L + QITD+G+ + G L L L IT YL NL+ L
Sbjct: 256 CDLPKLQELFVGHNQITDSGINEFSEKIGNKLKILSLSRNNITSLCTQYLCTKLTNLKKL 315
Query: 378 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ G +TD VK I + + L L++S N N+TDK+LE + L ++V+
Sbjct: 316 YLAGVSITDEDVKLICQCMKLLIYLDVSWN-NVTDKSLEYVIASESLREVDVN 367
>gi|114615213|ref|XP_001157967.1| PREDICTED: F-box/LRR-repeat protein 13 isoform 2 [Pan troglodytes]
gi|397466177|ref|XP_003804844.1| PREDICTED: F-box/LRR-repeat protein 13 isoform 1 [Pan paniscus]
Length = 735
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 112/428 (26%), Positives = 196/428 (45%), Gaps = 68/428 (15%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + P D+ M I+ +L ++LS + +T+ + L + NLQ+L +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306
Query: 92 IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG + + G+++L
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYISNSCTGIMHLTINDMPTLTDN 366
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C+RI H + L KL + + +TD+ K +
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
NL + ++ C +TDS + L L++LT+LNL C +
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC-----------------------VR 463
Query: 240 LSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGL 293
+ D G ++F + LNL +C + D ++ L+ C NL L L + + + + G+
Sbjct: 464 IGDMGLKQFLDGPASIKIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGI 523
Query: 294 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAAL-TSLTGLT 351
++ + +L SI+LS T IS+ L L+ LK L++ + +ITD G+ A S L
Sbjct: 524 GYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQAFCKSSLILE 583
Query: 352 HLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNC 407
HLD+ + ++++D L + NL SL I G +TD+ ++ + L +L++S
Sbjct: 584 HLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEMLSAKCHYLHILDISGCV 643
Query: 408 NLTDKTLE 415
LTD+ LE
Sbjct: 644 LLTDQILE 651
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 30/266 (11%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCN-LKCLELSDTQVGS 290
LN C L S NL+ LN+ C DE + +++ C + CL LS+T + +
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 291 SGLRHLS-GLTNLESINLSF-TGISDGSLRKL---AGLSSLKSLNLDA-RQITDTGLAAL 344
+R L NL++++L++ +D L+ L G L L+L QI+ G +
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 345 T-SLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICG--GGLTDAGVKHIKDLS---- 396
+ S TG+ HL + +TD+ L +E C L G HI D +
Sbjct: 346 SNSCTGIMHLTINDMPTLTDNCVKAL--------VEKCSRITSLVFTGAPHISDCTFRAL 397
Query: 397 ---SLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLT 451
L + N +TD + + I L + +++ + IT + LR L PLK L L
Sbjct: 398 SACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLN 457
Query: 452 LESCKVTANDIKRLQSRDLPNLVSFR 477
L +C V D+ Q D P + R
Sbjct: 458 LANC-VRIGDMGLKQFLDGPASIKIR 482
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+S+DLSG+D+++ GL L L+ L + C +I+D G++ +F +++
Sbjct: 531 SLVSIDLSGTDISNEGLNVLSRHKKLKELSVSECYRITDDGIQ-----------AFCKSS 579
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKP 175
I L LD+ C+++ ++ + + L SL+I C ITDS M+
Sbjct: 580 LI-------------LEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDSAMEM 626
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + L L IS C +TD + L+ G ++L +L ++ C
Sbjct: 627 LSAKCHYLHILDISGCVLLTDQILEDLQIGCKQLRILKMQYC 668
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 50/301 (16%)
Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFS------------------ 249
LN GC + S+S +L LN++ C +D+ S
Sbjct: 226 LNFRGCLLRPKTFRSVSHCRNLQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITN 285
Query: 250 --------RLTNLESLNLDSC-GIGDEGL--VNLTGLCN-LKCLELSD-TQVGSSGLRHL 296
NL++L+L C D+GL +NL C+ L L+LS TQ+ G R++
Sbjct: 286 RTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYI 345
Query: 297 S----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD-ARQITDTGLAALTSLTGL 350
S G+ +L +IN ++D ++ L S + SL A I+D AL++ L
Sbjct: 346 SNSCTGIMHL-TIN-DMPTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA-CKL 402
Query: 351 THLDLFG-ARITDSGAAYL-RNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC 407
+ G R+TD+ ++ +N+ NL + + G+TD+ ++ + L LT+LNL+
Sbjct: 403 RKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCV 462
Query: 408 NLTDKTL-ELISGLTGLV--SLNVSNS-RITSAGLRHL-KPLKNLRSLTLESCK-VTAND 461
+ D L + + G + LN+SN R++ A + L + NL L+L +C+ +TA
Sbjct: 463 RIGDMGLKQFLDGPASIKIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQG 522
Query: 462 I 462
I
Sbjct: 523 I 523
>gi|428225640|ref|YP_007109737.1| hypothetical protein GEI7407_2206 [Geitlerinema sp. PCC 7407]
gi|427985541|gb|AFY66685.1| leucine-rich repeat-containing protein [Geitlerinema sp. PCC 7407]
Length = 504
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 153/321 (47%), Gaps = 28/321 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
GL +L L+ L L + SD++PLS L NL++L +S + +TD + L L L
Sbjct: 85 GLTDLSPLVSLPQLTGLSLYNSSLSDLRPLSSLPNLRALDLSYANLTD--VTVLGTLGTL 142
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266
LNL G PV L L L L L L ++D L NL L+L +GD
Sbjct: 143 QALNLRGNPVRD--LRPLQGLQRLHTLTLGWSTVTD--LSTLPTLPNLHQLDLSGSQVGD 198
Query: 267 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 326
+ +L L+ L LS ++ S L + L +L+ N + T ++ A + L
Sbjct: 199 --IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLDLENNALTRVTIP-----ASMGKL 251
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386
+SLNL I + L L L ++T+ A + + L+ L++ +TD
Sbjct: 252 ESLNLANNAIASLQFGG--QIPALRRLSLASNQLTEVRA--IASQPQLQELDLSFNQITD 307
Query: 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446
G + L ++ +L +S N ++D L ++GLT L +L++S A +R + PL+
Sbjct: 308 LG--PLASLGAIRVLKISGNRPISD--LRPLAGLTTLQALDLSE-----ASIRDITPLRG 358
Query: 447 LRSLTLESCKVTANDIKRLQS 467
LR+ LE+ ++ N I++L+S
Sbjct: 359 LRN--LETLVLSGNQIQQLES 377
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 149/320 (46%), Gaps = 37/320 (11%)
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAI 119
+DLSGS V D + L L++L+ N I+ + LR L NNA+
Sbjct: 189 LDLSGSQVGD--IRSLAPQPRLETLNLSANRISSIALPAMPSLRSLD-------LENNAL 239
Query: 120 TAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
T + A G + + L + GG + + L S N +T+ ++ ++
Sbjct: 240 TRVTIPASMGKLESLNLANNAIASLQFGGQIPALRRLSLAS------NQLTE--VRAIAS 291
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNR 237
L+ L +S +++TD G L L + +L + G P++ L L+ L +L L+L+
Sbjct: 292 QPQLQELDLSFNQITDLG--PLASLGAIRVLKISGNRPISD--LRPLAGLTTLQALDLSE 347
Query: 238 CQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
+ D L NLE+L L I + L +L+GL L L + Q+ S LR ++
Sbjct: 348 ASIRD--ITPLRGLRNLETLVLSGNQI--QQLESLSGLNRLSYLAIGGNQI--SDLRAIA 401
Query: 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
L +L+++ L I+ S+R LA L LK L L QITD A L +LTGLT L L
Sbjct: 402 ALYSLQTLMLDSNRIT--SVRPLASLGQLKVLTLGNNQITDP--APLAALTGLTVLQLPQ 457
Query: 358 ARITDSGAAYLRNFKNLRSL 377
RIT+ A L NLR L
Sbjct: 458 NRITNFDA--LATLTNLRIL 475
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSG---------------------LIHLKDCSNLQSLDFN 89
IASQ L +DLS + +TD G L L + LQ+LD +
Sbjct: 288 AIASQ-PQLQELDLSFNQITDLGPLASLGAIRVLKISGNRPISDLRPLAGLTTLQALDLS 346
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-- 147
+ S + LRGL NL +L N Q +++ +GL L L + GG
Sbjct: 347 ---EASIRDITPLRGLRNLETLVLSGNQI---QQLESLSGLNRLSYLAI-------GGNQ 393
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
+ +L+ + L SL + + ++PL+ L LK L + +++TD A L L LT
Sbjct: 394 ISDLRAIAALYSLQTLMLDSNRITSVRPLASLGQLKVLTLGNNQITDP--APLAALTGLT 451
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
+L L +T D+L+ L +L L L +S C
Sbjct: 452 VLQLPQNRIT--NFDALATLTNLRILGLWENPVSPPVCP 488
>gi|290992602|ref|XP_002678923.1| predicted protein [Naegleria gruberi]
gi|284092537|gb|EFC46179.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 89/162 (54%), Gaps = 7/162 (4%)
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ ++ + L SL++ I G +++ + LT LD+ G RI D GA ++ K L+S
Sbjct: 122 INEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKS 181
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L I + G+K I ++ LT L++ +N ++ D+ + IS + L SL V+N+RI
Sbjct: 182 LNIYNDWIGIDGIKPISEMKQLTSLDIGRN-HIGDEVAKFISDMKQLTSLTVNNNRIGVE 240
Query: 437 GLRHLKPLKNLRSLTLESCKVTA------NDIKRLQSRDLPN 472
G + + +K L+SL + + ++ A +++K+L S D+ +
Sbjct: 241 GAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISD 282
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+T + L L++S + + G + +S + L S+++ I D + ++ L LKSLN+
Sbjct: 125 MTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNI 184
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
I G+ ++ + LT LD+ I D A ++ + K L SL + + G K
Sbjct: 185 YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKF 244
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
I ++ L L ++ N + + + IS + L SL++S+++I + G + +
Sbjct: 245 ISEMKQLKSLGINNN-QIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 88/179 (49%)
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
S+ T I + +++LT L++ + A S+S + L L++ ++ D G + S
Sbjct: 115 SEETPKFINEMTKMKQLTSLDISYNLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFIS 174
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L L+SLN+ + IG +G+ ++ + L L++ +G + +S + L S+ ++
Sbjct: 175 ELKQLKSLNIYNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNN 234
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
I + ++ + LKSL ++ QI G ++ + LT LD+ +I GA ++
Sbjct: 235 NRIGVEGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAEGAKFI 293
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SL+I + N I K +S + L SL I +++ D G ++ L++L LN+
Sbjct: 128 MKQLTSLDISY-NLIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLKSLNIYN 186
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
+ + +S + L L++ R + D+ + S + L SL +++ IG EG ++
Sbjct: 187 DWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGVEGAKFIS 246
Query: 274 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ LK L +++ Q+ + G + +S + L S+++S
Sbjct: 247 EMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDIS 281
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + + LTSL N I A+G K+ + + L LD+ G + L +L+
Sbjct: 122 INEMTKMKQLTSLDISYN-LIYAEGAKSISEMKQLTSLDIGGNRIYDKGAKFISELKQLK 180
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
SLNI + + I +KP+S + L SL I + + D ++ +++LT L + +
Sbjct: 181 SLNI-YNDWIGIDGIKPISEMKQLTSLDIGRNHIGDEVAKFISDMKQLTSLTVNNNRIGV 239
Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+S + L L +N Q+ +G + S + L SL++ I EG
Sbjct: 240 EGAKFISEMKQLKSLGINNNQIYAEGAKFISEMKQLTSLDISDNQIYAEG 289
>gi|345310405|ref|XP_001520129.2| PREDICTED: insulin-like growth factor-binding protein complex acid
labile subunit-like [Ornithorhynchus anatinus]
Length = 604
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 158/378 (41%), Gaps = 27/378 (7%)
Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT------RIHGGLVNLK------- 152
NL SLS N +G AFAGL L +L+L T + GL +L+
Sbjct: 143 PNLASLSLANNRLGQLEG-AAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLAGN 201
Query: 153 -----------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201
GL +L+ L++ N + +GL L+ L + ++++
Sbjct: 202 RLAYLQPPLFAGLGELQELDLS-TNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFL 260
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
GL+ L L+L + D+ L SL L L+ ++ + F L +LE L L
Sbjct: 261 GLRALRWLDLSHNRLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAH 320
Query: 262 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 321
+G GL L+ L L+D + G +GL L +NLS ++ +
Sbjct: 321 NRLGALAAGAFEGLARLEVLALNDNHIREIGPGAFAGLARLAVVNLSGNCLAALPAQTFR 380
Query: 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
GL++L SL+L+ + A L L L L IT L + L L++ G
Sbjct: 381 GLAALHSLHLERACLGRVPAGAFAGLVALRRLSLGHNGITAIEEQGLHDLTGLLELDLTG 440
Query: 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441
LT + +DL+ L L L+ N L D E + L L L+++++R+ +
Sbjct: 441 NRLTHLPTRAFRDLARLEYLLLAGN-QLADLAPEALLPLRRLSWLDLAHNRLGAVAAGLF 499
Query: 442 KPLKNLRSLTLESCKVTA 459
PL +LR L+L + + A
Sbjct: 500 APLASLRFLSLRNNSLRA 517
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 112/297 (37%), Gaps = 14/297 (4%)
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
C C D D + L + CS S Q L L+G +TA +
Sbjct: 41 CACSYDDDYG--------EELSVFCSARNLSSPPEGVPCQARALW-LDGNNLTALPAAAF 91
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL--CNLKCLE 282
L L +LNL +L + F L L L+L+ + GL T L NL L
Sbjct: 92 GNLSGLDFLNLQGSRLGQLEAQAFRGLARLAHLHLERNQL--RGLAPGTFLHTPNLASLS 149
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
L++ ++G +GL L +NL + ++ GL L+ L L ++
Sbjct: 150 LANNRLGQLEGAAFAGLCQLGELNLGWNTLAVLPDAVFRGLPHLRELVLAGNRLAYLQPP 209
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L L LDL + A L+ L + G L+ + L +L L+
Sbjct: 210 LFAGLGELQELDLSTNSLRSVKAHVFAGLPRLQKLFLRGNQLSAVAPRAFLGLRALRWLD 269
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
LS N L + GL L L +S + ITS + + L +L L L ++ A
Sbjct: 270 LSHN-RLAVLFEDTFLGLPSLHVLRLSANVITSLRPQAFRDLPHLEELQLAHNRLGA 325
>gi|290970032|ref|XP_002668015.1| predicted protein [Naegleria gruberi]
gi|284081037|gb|EFC35271.1| predicted protein [Naegleria gruberi]
Length = 224
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 102/197 (51%), Gaps = 2/197 (1%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
+ L L++ + IG+EG + + L L++ + S GL H++ L L+ + + +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
+ DG+ + ++ + L +LN++ I + G ++ L +T+L++ I + G ++
Sbjct: 61 SVGDGA-KYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
K L L I + D GV + L LT L++S++ + +K +L+S + L L++S
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHI-IGEKGTKLLSEMEQLTHLDISE 178
Query: 431 SRITSAGLRHLKPLKNL 447
I G++H+ +KNL
Sbjct: 179 CCIQYEGVKHISEMKNL 195
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 1/223 (0%)
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ L L +S + + + G ++ +++LT L++ + + L+ ++ L L L +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D G + S + L +LN+++ I ++G ++ L + L +S ++G+ GL H+S
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ L +N+ I D + L GL L +L++ I + G L+ + LTHLD+
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISEC 179
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
I G ++ KNL IC G K + ++ +L L
Sbjct: 180 CIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+++LT L++ + + + L YL++ R ++ G + L L+ L +
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG 322
+GD G ++ + L L ++ + G + +S L + ++N+SF I + L ++
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHISR 119
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L LN+ + I DTG+ L L LT LD+ I + G L + L L+I
Sbjct: 120 MKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDISEC 179
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNC 407
+ GVKHI ++ +LT N+ NC
Sbjct: 180 CIQYEGVKHISEMKNLTYPNICLNC 204
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
+ LT LS NN I +G K + L LD+ R GL ++ L KL+ L I +
Sbjct: 1 MRQLTCLSVSNNN-IGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYY 59
Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSL 224
N + D K +S + L +L ++ + + + G ++ L +T LN+ + L+ +
Sbjct: 60 -NSVGDG-AKYISEMKQLTNLNVNTACINEKGAKFISELPLVTNLNISFNEIGNQGLEHI 117
Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
S + L +LN+ + D G L L +L++ IG++G L+ + L L++S
Sbjct: 118 SRMKQLTHLNIQSNNIDDTGVYFLHGLDQLTTLDISKHIIGEKGTKLLSEMEQLTHLDIS 177
Query: 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
+ + G++H+S + NL N+ G + L + +L L
Sbjct: 178 ECCIQYEGVKHISEMKNLTYPNICLNCFGKGGAKCLCEMKNLIKL 222
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
+ L L++ I + G + + LT+LD+ I G ++ N L+ L I
Sbjct: 1 MRQLTCLSVSNNNIGNEGFKFICEMKQLTYLDVGRNDINSKGLNHITNLDKLKDLRIYYN 60
Query: 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ D G K+I ++ LT LN++ C + +K + IS L + +LN+S + I + GL H+
Sbjct: 61 SVGD-GAKYISEMKQLTNLNVNTAC-INEKGAKFISELPLVTNLNISFNEIGNQGLEHIS 118
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRD 469
+K L L ++S + + L D
Sbjct: 119 RMKQLTHLNIQSNNIDDTGVYFLHGLD 145
>gi|300704108|ref|YP_003745710.1| leucine-rich-repeat type III effector protein (gala4) [Ralstonia
solanacearum CFBP2957]
gi|299071771|emb|CBJ43095.1| leucine-rich-repeat type III effector protein (GALA4) [Ralstonia
solanacearum CFBP2957]
Length = 461
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 8/292 (2%)
Query: 168 ITDSDMKPLSGLTNLKSLQISC--SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
TD+D++ L +L+ L +S +T GIA+L L L L++ GC + A L+
Sbjct: 133 FTDADLQRLP--PSLRELDLSLCEGPITAVGIAHLLAL-PLDRLDVSGCELNADSARLLA 189
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
+L LNL R + D G F+R L +LN+ S GIG G+ L + L++S+
Sbjct: 190 GHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISN 249
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
++G G L+ T L ++ S GI + LA ++L SL+L I G+ AL
Sbjct: 250 NEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG 309
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405
T L L G + A L L L + + +AG + ++L LNLS
Sbjct: 310 RNTTLRTLHACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSN 369
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457
N ++ E L +L++SN++I + L + L +L + S ++
Sbjct: 370 NG--IERVPEWADN-GKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRI 418
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 13/311 (4%)
Query: 133 LVKLDLERCTRIHGGLVNLKGL-----MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
L +LDL C G + G+ + L+ L++ C DS + L+G L +L +
Sbjct: 145 LRELDLSLCE----GPITAVGIAHLLALPLDRLDVSGCELNADS-ARLLAGHPTLTTLNL 199
Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + D+G+A +KLT LN+ + A + +L+A ++ L+++ ++ D+G
Sbjct: 200 RRNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALA 259
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+ T L L+ CGIG EG L L L+LS + + G+ L T L +++
Sbjct: 260 LASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGVEALGRNTTLRTLHA 319
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
+ LA ++L LNL + I + G A + T L L+L I + +
Sbjct: 320 CGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGI-ERVPEW 378
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
N K L +L++ + D + + +LT LN+ N + D ++G T L +LN
Sbjct: 379 ADNGK-LTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSN-RIGDTGACALAGNTTLTTLN 436
Query: 428 VSNSRITSAGL 438
VS +RI AG+
Sbjct: 437 VSLNRIGKAGM 447
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 18/316 (5%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA----ITAQGMK 125
TD+ L L +L+ LD + C +G + + G+++L +L R + + A +
Sbjct: 134 TDADLQRLP--PSLRELDLSLC----EGPITAV-GIAHLLALPLDRLDVSGCELNADSAR 186
Query: 126 AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185
AG L L+L R G+ KL +LN+ N I + ++ L+ T + +L
Sbjct: 187 LLAGHPTLTTLNLRRNAIDDAGVAAFARNKKLTTLNVS-SNGIGPAGVRALAANTTITTL 245
Query: 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
IS +++ D G L LT L+ C + +L+ +L L+L+ + +G
Sbjct: 246 DISNNEIGDEGALALASNTTLTRLDASDCGIGPEGTQALATSTTLTSLDLSYNAIEAEGV 305
Query: 246 EKFSRLTNLESLNLDSCG--IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
E R T L +L+ +CG +G L L L LS +G++G R T L
Sbjct: 306 EALGRNTTLRTLH--ACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLV 363
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+NLS GI + + A L +L+L QI DT L + LT L++ RI D+
Sbjct: 364 ELNLSNNGIE--RVPEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDT 421
Query: 364 GAAYLRNFKNLRSLEI 379
GA L L +L +
Sbjct: 422 GACALAGNTTLTTLNV 437
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 134/325 (41%), Gaps = 34/325 (10%)
Query: 57 SSLLSVDLS--GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
SL +DLS +T G+ HL L LD + C +++ L G LT+L+ R
Sbjct: 143 PSLRELDLSLCEGPITAVGIAHLLALP-LDRLDVSGC-ELNADSARLLAGHPTLTTLNLR 200
Query: 115 RN-----------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151
RN N I G++A A + LD+ G + L
Sbjct: 201 RNAIDDAGVAAFARNKKLTTLNVSSNGIGPAGVRALAANTTITTLDISNNEIGDEGALAL 260
Query: 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211
L L+ C I + L+ T L SL +S + + G+ L + TL L
Sbjct: 261 ASNTTLTRLDASDCG-IGPEGTQALATSTTLTSLDLSYNAIEAEGVEALG--RNTTLRTL 317
Query: 212 EGCPVTAACLDS--LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
C ++ L+A +L LNL+ + + G F T L LNL + GI E +
Sbjct: 318 HACGNELGHREAELLAANTTLTVLNLSSNAIGNAGARAFGANTTLVELNLSNNGI--ERV 375
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
L L+LS+ Q+G + + L+ L ++N+ I D LAG ++L +L
Sbjct: 376 PEWADNGKLTTLDLSNNQIGDTAAQVLAASRTLTTLNVGSNRIGDTGACALAGNTTLTTL 435
Query: 330 NLDARQITDTGLAALTSLTGLTHLD 354
N+ +I G+ AL + T L L+
Sbjct: 436 NVSLNRIGKAGMLALAANTTLEKLE 460
>gi|157866007|ref|XP_001681710.1| putative surface antigen protein [Leishmania major strain Friedlin]
gi|68125008|emb|CAJ02922.1| putative surface antigen protein [Leishmania major strain Friedlin]
Length = 760
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 177/405 (43%), Gaps = 36/405 (8%)
Query: 6 ISQQIF---NELVYSRCLTEVSLEA-FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
+S +F N Y+ L E+ + +R ++DL P ++ D + G LLS
Sbjct: 78 VSVDVFVGLNVSTYAGTLPEIPVNVDYRHVMIRDLGFWNMPLLSGTLPDSWSKLGG-LLS 136
Query: 62 VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR---NNA 118
V SG V+ + L++L C ++ L N L R+ +
Sbjct: 137 VTFSGCGVSGTLPASWGLMVRLRALTVGNCRHLTGSLPSEWSWLPNFQILVLRQLQLSGT 196
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ A+ ++ + +L++L++ I G +L KW S
Sbjct: 197 LPAE----WSRVTSLLELEIVAAGDITG------------TLPAKW------------SS 228
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
+ +L++L + ++V+ + + ++ LT L LEG V+ S++ SL LNL
Sbjct: 229 IKSLRTLNLEGTQVSGTLPSGWSEMKSLTSLELEGTQVSGTLPPGWSSIKSLRTLNLEGT 288
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
Q+S ++ + +L +LNL+ + + + +L LEL TQV + S
Sbjct: 289 QVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTSLELEGTQVSGTLPLGWSE 348
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
+ +L ++NL T +S + ++SL++LNL+ Q++ T + + LT+L L G
Sbjct: 349 MKSLRTLNLEGTQVSGSLPPQWVSMASLRTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGT 408
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403
+++ S R K+L +L + G ++ + L+SL L+L
Sbjct: 409 QLSGSLPTEWRGIKSLTNLYLKGTQVSGSLPPQWSSLTSLRTLDL 453
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 140/331 (42%), Gaps = 27/331 (8%)
Query: 54 SQGSSLLSVDL-SGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+ +SLL +++ + D+T + +L++L+ Q+S + +LTSL
Sbjct: 202 SRVTSLLELEIVAAGDITGTLPAKWSSIKSLRTLNLEG-TQVSGTLPSGWSEMKSLTSLE 260
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDS 171
++ ++ + +L L+LE T++ G L + L +LN++
Sbjct: 261 LE-GTQVSGTLPPGWSSIKSLRTLNLEG-TQVSGSLPPQWVSMASLRTLNLE--GTQVSG 316
Query: 172 DMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
+ P S + +L SL++ ++V+ + ++ L LNLEG V+ + ++ SL
Sbjct: 317 TLPPGWSEMKSLTSLELEGTQVSGTLPLGWSEMKSLRTLNLEGTQVSGSLPPQWVSMASL 376
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LNL Q+S +S + +L +L L+ + G+ +L L L TQV
Sbjct: 377 RTLNLEGTQVSGTLPPGWSEMKSLTNLYLEGTQLSGSLPTEWRGIKSLTNLYLKGTQVSG 436
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S S LT+L +++L T +S + + + S ++L L+
Sbjct: 437 SLPPQWSSLTSLRTLDLEGTQVSGRLPPEWSRMLSAENLQLE------------------ 478
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICG 381
H DL G+ + A LR CG
Sbjct: 479 -HCDLSGSLPPEWSAMPRLRLVGLRGNRFCG 508
>gi|220932817|ref|YP_002509725.1| hypothetical protein Hore_19830 [Halothermothrix orenii H 168]
gi|219994127|gb|ACL70730.1| leucine-rich repeat protein [Halothermothrix orenii H 168]
Length = 531
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 136/486 (27%), Positives = 220/486 (45%), Gaps = 92/486 (18%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
LTE S+ +FR + + G +N K + + G + +S D+T L HL D
Sbjct: 66 LTEFSIPSFRHYEINSIK-GLEAFLNIKTLRI----GPNYIS------DLT--PLAHLTD 112
Query: 80 CSNLQSLDFNFCIQISD----GGLEHLRGLSNLTSLSFRR---NNAITAQGMKAFAGLIN 132
L + F I D G L+ LR L +++ + + ++ + L
Sbjct: 113 LERL----YIFENHIEDLSPLGKLKELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAG 168
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKL---ESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
LVKL+ + + H + NL+ L +L ++LN+ + N I SD+KPL+ LT L L +
Sbjct: 169 LVKLEYLKLS--HQKISNLETLTQLPNLKTLNVAY-NSI--SDLKPLTALTGLSHLDLEA 223
Query: 190 SKVTDSGIAYLKGLQKLTLLNL--------------EGCPVTAACLDSLSALGSLFYL-N 234
+ + D I+ L+GL+KLT LNL EG V + L + SL L N
Sbjct: 224 NNIKD--ISPLRGLKKLTYLNLIRNELTGVKHLSSLEGLQVLLLSGNDLRNIASLTRLVN 281
Query: 235 LNRCQLSDDG---CEKFSRLTNLESLNLDSCGIGDEGLVN-------------------- 271
L + +SD+ L+ LN+ I D ++
Sbjct: 282 LEKLDISDNNISVAPGLKEFKGLKELNISGNPIDDINFISECRKLERLLAFNCEIRDISP 341
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L G +LK L L + ++ + + L GL LE ++LS I + S+ ++GL+ LK L+L
Sbjct: 342 LRGHNSLKELFLHNNRI--TDISPLEGLNTLERLDLSGNSIENVSV--ISGLNKLKYLDL 397
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ +T + L L L +L+L RI S L+ NL++L +
Sbjct: 398 EGCGLT--AIEFLKDLGSLEYLELENNRI--SQIEPLKKHINLKTLVLDNN--------Q 445
Query: 392 IKDLSSL-TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
IKD+S+L L+NL + +L D +E I LTGL L V I+ +R++KPL L +L
Sbjct: 446 IKDISTLGELMNL-KVLSLNDNQIENIDSLTGLNQLEV--LYISGNRIRNIKPLLKLNNL 502
Query: 451 TLESCK 456
++ + K
Sbjct: 503 SVVAIK 508
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 158/333 (47%), Gaps = 41/333 (12%)
Query: 145 HGGLVNLKGLMKLESLNIKWCNCITD--SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
H + ++KGL LNIK + SD+ PL+ LT+L+ L I + + D S + LK
Sbjct: 76 HYEINSIKGLEAF--LNIKTLRIGPNYISDLTPLAHLTDLERLYIFENHIEDLSPLGKLK 133
Query: 202 GLQKLTLLNL----EGCP---VTAACLDSLSALGSLF---YLNLNRCQLSDDGCEKFSRL 251
L++L + L +G P + ++ +S L L YL L+ ++S+ E ++L
Sbjct: 134 ELRELIIRGLPPYKKGLPSGKYSGHYIEDISPLAGLVKLEYLKLSHQKISN--LETLTQL 191
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFT 310
NL++LN+ I D L LT L L L+L + S LR L LT L I T
Sbjct: 192 PNLKTLNVAYNSISD--LKPLTALTGLSHLDLEANNIKDISPLRGLKKLTYLNLIRNELT 249
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
G+ + L+ L L+ L L + + +A+LT L L LD+ I S A L+
Sbjct: 250 GV-----KHLSSLEGLQVLLLSGNDLRN--IASLTRLVNLEKLDISDNNI--SVAPGLKE 300
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
FK L+ L I G + D + I + L L L+ NC + D + + G L L + N
Sbjct: 301 FKGLKELNISGNPIDD--INFISECRKLERL-LAFNCEIRD--ISPLRGHNSLKELFLHN 355
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+RIT + PL+ L TLE ++ N I+
Sbjct: 356 NRITD-----ISPLEGLN--TLERLDLSGNSIE 381
>gi|290991093|ref|XP_002678170.1| predicted protein [Naegleria gruberi]
gi|284091781|gb|EFC45426.1| predicted protein [Naegleria gruberi]
Length = 156
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%)
Query: 278 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
LK L++ ++ +G G + +S +T+LE+++LS + D L + L L++ ++T
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVT 63
Query: 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 397
G +++SL L L++ I D+GA ++ N KNL L G G+++ GV+ I + S
Sbjct: 64 SIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMES 123
Query: 398 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
LT L+L +N + + T LIS + L SL++SN
Sbjct: 124 LTALSLQKNDDFEENTPLLISTMKQLTSLDLSN 156
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
L +DG + S +T+LE+L+L +GD+G V L + L L + +V S G +S L
Sbjct: 14 LGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPCNRVTSIGAESISSL 73
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
NL ++N+S I+D + ++ L +L L D I++ G+ +TS+ LT L L
Sbjct: 74 QNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L++L I + + + + K +S +T+L++L +S + V D G L + +L L++
Sbjct: 1 MKRLKTLKI-YNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIPC 59
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
VT+ +S+S+L +L LN+++ ++D G + S L NL L D GI ++G+ +T
Sbjct: 60 NRVTSIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFIT 119
Query: 274 GLCNLKCLEL 283
+ +L L L
Sbjct: 120 SMESLTALSL 129
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN- 408
L L ++ + + + GA + +L +L + G + D G + + L + LS CN
Sbjct: 4 LKTLKIYNSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQL--VKLSIPCNR 61
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 468
+T E IS L L++LN+S + I G + + LKNL L + ++ + ++ + S
Sbjct: 62 VTSIGAESISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSM 121
Query: 469 D 469
+
Sbjct: 122 E 122
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
N+ + G K + + +L L L + G V L + +L L+I CN +T +
Sbjct: 11 NSFLGEDGAKVISTMTSLENLHLSGASVGDKGAVLLGSMHQLVKLSIP-CNRVTSIGAES 69
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
+S L NL +L IS + + D+G ++ L+ L L +G ++ ++ ++++ SL L+L
Sbjct: 70 ISSLQNLITLNISQNIIADTGAKFISNLKNLNELIADGIGISNDGVEFITSMESLTALSL 129
Query: 236 NRCQLSDDGCEK----FSRLTNLESLNL 259
Q +DD E S + L SL+L
Sbjct: 130 ---QKNDDFEENTPLLISTMKQLTSLDL 154
>gi|320168281|gb|EFW45180.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 164/385 (42%), Gaps = 11/385 (2%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL--ERCTRIHG-GLV 149
QI+ GL+ L +L N IT+ AFA L L LDL + + I
Sbjct: 90 QITSIPANAFSGLTALNTLQLFSNQ-ITSIPANAFADLAALTSLDLFVNQISSIPANAFT 148
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
L L +L LN I D+ + LT+L L +S +++T GL LT L
Sbjct: 149 GLSALTQLR-LNTNQITSIPDNV---FADLTSLNGLGLSSNQLTVISANAFNGLTALTSL 204
Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL 269
L P+T + ++L +L L + Q++ + F LT L S+NL I
Sbjct: 205 MLGLNPMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSINLRDNPITTIAA 264
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
TGL LK + L + + S +GLT L +++LS I+ S +GL++L +
Sbjct: 265 NAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSANTFSGLTALLYV 324
Query: 330 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
+L A ++T AL L +DL I+ A L L + +T
Sbjct: 325 HLGANRLTSIPADALARLPAGAGVDLSKNLISSVSADEFAGLTALGGLVLSSNLITTIPA 384
Query: 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+++L LL L N +T + +GLT L L + ++ITS + L L+
Sbjct: 385 GAFASMNALILLALDNN-TITSISANAFTGLTALQYLYLGLNQITSIPVDAFTSLTALQY 443
Query: 450 LTLESCKVTANDIKRLQSRDLPNLV 474
L L+ ++T+ + DL LV
Sbjct: 444 LRLDGNQITS--VPATAFADLTALV 466
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 119/283 (42%), Gaps = 8/283 (2%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
GL+ LTSL N +T AFA L L L +E L L S+N
Sbjct: 195 FNGLTALTSLMLGLN-PMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSIN 253
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
++ N IT +GL+ LK + + + +T GL LT L+L + +
Sbjct: 254 LRD-NPITTIAANAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSA 312
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
++ S L +L Y++L +L+ + +RL ++L I GL L L
Sbjct: 313 NTFSGLTALLYVHLGANRLTSIPADALARLPAGAGVDLSKNLISSVSADEFAGLTALGGL 372
Query: 282 ELSD---TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
LS T + + ++ L L N + T IS + GL++L+ L L QIT
Sbjct: 373 VLSSNLITTIPAGAFASMNALILLALDNNTITSISANAFT---GLTALQYLYLGLNQITS 429
Query: 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381
+ A TSLT L +L L G +IT A + L L + G
Sbjct: 430 IPVDAFTSLTALQYLRLDGNQITSVPATAFADLTALVGLTLNG 472
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 155/389 (39%), Gaps = 59/389 (15%)
Query: 103 RGLSNL--------TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL 154
RGL+ + T+LS N IT+ AF+GL L L +HG
Sbjct: 44 RGLTTIPSGIPVETTTLSLYSNQ-ITSIPANAFSGLTALATL------MLHG-------- 88
Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214
N IT SGLT L +LQ+ +++T L LT L+L
Sbjct: 89 -----------NQITSIPANAFSGLTALNTLQLFSNQITSIPANAFADLAALTSLDLFVN 137
Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI------GDEG 268
+++ ++ + L +L L LN Q++ F+ LT+L L L S + G
Sbjct: 138 QISSIPANAFTGLSALTQLRLNTNQITSIPDNVFADLTSLNGLGLSSNQLTVISANAFNG 197
Query: 269 LVNLT------------------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L LT L L+ L++ Q+ S LT L SINL
Sbjct: 198 LTALTSLMLGLNPMTVFPSAAFASLTALESLQMEAGQIASISADTFPDLTALTSINLRDN 257
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+ + GLS+LK + L IT A T LT LT LDL +I A
Sbjct: 258 PITTIAANAFTGLSALKMIYLQNNLITSISATAFTGLTALTALDLSVNQINSLSANTFSG 317
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
L + + LT + L + ++LS+N ++ + + +GLT L L +S+
Sbjct: 318 LTALLYVHLGANRLTSIPADALARLPAGAGVDLSKNL-ISSVSADEFAGLTALGGLVLSS 376
Query: 431 SRITSAGLRHLKPLKNLRSLTLESCKVTA 459
+ IT+ + L L L++ +T+
Sbjct: 377 NLITTIPAGAFASMNALILLALDNNTITS 405
>gi|343413825|emb|CCD21196.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]
Length = 510
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 51/360 (14%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
S+L++LD + C I+D + L LS+L +L IT + + L +L L L
Sbjct: 43 SSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSHCTGIT--DVPPLSVLSSLRTLGLSH 98
Query: 141 CTRIHGGLVNLKGLMKLESLNIKW-CNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIA 198
CT G+ ++ L SL + + +C +D+ PLS L++L++L +S C+ +TD ++
Sbjct: 99 CT----GITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLSSLRTLDLSHCTGITD--VS 152
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
L L L L L C + LS L SL L+L+ C D S L++L +L
Sbjct: 153 PLSKLSSLHTLGLSHC-TGITDVSPLSKLSSLHTLDLSHCTGITD-VPPLSVLSSLRTLG 210
Query: 259 LDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGS 316
L C GI D + L+ L +L+ L+LS G + + LS L++L ++ LS TGI+D S
Sbjct: 211 LSHCTGITD--VSPLSVLSSLRMLDLSHCT-GITDVSPLSKLSSLRTLGLSHCTGITDVS 267
Query: 317 LRKLAGLSSLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGAR-ITD------------ 362
L+ LSSL L L ITD ++ LT++ G L L ITD
Sbjct: 268 --PLSKLSSLHILGLSHCTGITD--VSPLTTIIGFEKLYLSNCTGITDVSPLSKLSSLRS 323
Query: 363 ---------SGAAYLRNFKNLRSLEI--CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411
+ + L +LR+L++ C G A V + +LSSL +LNLS +TD
Sbjct: 324 LDLSHCTGITDVSPLSELSSLRTLDLSHCRG---IANVSPLSNLSSLRMLNLSHCTGITD 380
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 138/492 (28%), Positives = 222/492 (45%), Gaps = 103/492 (20%)
Query: 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHLKDCSNLQSLDFNF 90
+L+ L L G+ D S+ SSL ++DLS + +TD + L S+L +L +
Sbjct: 21 SLRTLGLSHCTGITDVSP---LSKLSSLRTLDLSHCTGITD--VSPLSKLSSLHTLGLSH 75
Query: 91 CIQISDG------------GLEHLRGLSNLTSLS-------FRRNNAITAQGMKAFAGLI 131
C I+D GL H G+++++ LS ++ + + L
Sbjct: 76 CTGITDVPPLSVLSSLRTLGLSHCTGITDVSPLSVFSSLRMLYLSHCTGITDVSPLSKLS 135
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSDMKPLSGLTNLKSLQIS-C 189
+L LDL CT G+ ++ L KL SL+ + +C +D+ PLS L++L +L +S C
Sbjct: 136 SLRTLDLSHCT----GITDVSPLSKLSSLHTLGLSHCTGITDVSPLSKLSSLHTLDLSHC 191
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
+ +TD + L L L L L C + LS L SL L+L+ C D S
Sbjct: 192 TGITD--VPPLSVLSSLRTLGLSHC-TGITDVSPLSVLSSLRMLDLSHCTGITD-VSPLS 247
Query: 250 RLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+L++L +L L C GI D + L+ L +L L LS G + + L+ + E + LS
Sbjct: 248 KLSSLRTLGLSHCTGITD--VSPLSKLSSLHILGLSHCT-GITDVSPLTTIIGFEKLYLS 304
Query: 309 -FTGISD---------------------GSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
TGI+D + L+ LSSL++L+L + G+A ++
Sbjct: 305 NCTGITDVSPLSKLSSLRSLDLSHCTGITDVSPLSELSSLRTLDLSHCR----GIANVSP 360
Query: 347 LTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLEI--CGG------------------ 382
L+ L+ L + ITD + L F +LR+L++ C G
Sbjct: 361 LSNLSSLRMLNLSHCTGITD--VSPLSVFSSLRTLDLSHCTGITNVSPLSNLSSLRSLDL 418
Query: 383 ----GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
G+TD V + +LSSL LNLS +TD + +S L+ L +L++S+ G+
Sbjct: 419 SHCTGITD--VSPLSELSSLEKLNLSHCTAITD--VSPLSELSSLHTLDLSH----CTGI 470
Query: 439 RHLKPLKNLRSL 450
+ PL L SL
Sbjct: 471 TDVSPLSKLSSL 482
>gi|398024920|ref|XP_003865621.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503858|emb|CBZ38944.1| hypothetical protein, conserved [Leishmania donovani]
Length = 1208
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E RL +L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCR-GVRSLEPLRRLEHL 480
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLK------CLELSD----TQVGSSGLRHLSGLTNLES 304
+SL+L + D L++LTG L+ C +++D + + R L T L +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 540
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 541 ANMHHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 601 RLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---C 657
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 658 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 137/311 (44%), Gaps = 53/311 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M LV+L L+ +L+ L +D+ L
Sbjct: 537 LLSNANMHHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 570
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGS 229
LT L+ L +S + VTD G + L + L LNL C C+ SL+A +
Sbjct: 571 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLASC----RCITSLAAAFTASGRCMHR 626
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQV 288
L L+++ +SD G T+L LNL CG + L L + +L+ L L T+V
Sbjct: 627 LLSLDVSHTNISDAGVLCVQECTDLRYLNL--CGCSELRRLSWLQKMSSLRWLNLGGTRV 684
Query: 289 GSSGL-RHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITDTGLAAL 344
R+L NL ++LS G S S+R L L L+ LNL++ + D+ LA L
Sbjct: 685 TDEETKRYLPCTRNLRFLSLS--GCS--SVRSLFFAVKLPQLEYLNLESTSVADSELACL 740
Query: 345 TSLTGLTHLDL 355
L +L L
Sbjct: 741 CHCRKLRYLSL 751
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 326
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECIILHRCRGVR--SLEPLRRLEHL 480
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 384
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
++A + HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMHHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 445 KNLRSLTLESCK 456
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 190 SKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S VTD+ + L ++ L+L C CL L L +L L L + + +DG
Sbjct: 1000 SSVTDAMLEQLCVTFACVSCLDLTRC-TEVQCLSGLENLYALRELTLTQSSVDNDGVRVV 1058
Query: 249 SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
S LE L L C G+ D + +L GL L+ L ++ TQV + GL + L+ +N
Sbjct: 1059 SACETLEVLRLTECRGVSD--VNSLGGLRKLRVLCVARTQVTNQGLEGIGQCLALQYLNC 1116
Query: 308 S-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
+ +SD + L+ L L L+L+ + D G+ + + L
Sbjct: 1117 AECRYLSD--VNALSSLKHLIELHLERTDVVDAGICGVMRCSAL 1158
>gi|85679238|gb|ABC72035.1| InlA [Listeria monocytogenes]
Length = 791
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 178/368 (48%), Gaps = 53/368 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ +NL ++F F Q++D + L+ L+ L + NN IT + A L NL L
Sbjct: 93 LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 146
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + T I L NL L +LE + T SD+ LSGLTNL+ L ++VTD
Sbjct: 147 TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 198
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRL 251
LK L LT LE +++ + +S L L L Q+SD L
Sbjct: 199 -----LKPLANLT--TLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGIL 249
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
TNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L + L
Sbjct: 250 TNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 305
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 306 ISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSL 359
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L+ L ++D V + +L+++ L+ N IS LT L +L +
Sbjct: 360 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----T 404
Query: 432 RITSAGLR 439
RIT GL
Sbjct: 405 RITQLGLN 412
>gi|158300725|ref|XP_320584.4| AGAP011947-PA [Anopheles gambiae str. PEST]
gi|157013299|gb|EAA00258.4| AGAP011947-PA [Anopheles gambiae str. PEST]
Length = 1233
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 187/432 (43%), Gaps = 40/432 (9%)
Query: 48 WMDVIASQG-SSLLSVDLSGSDVTDSGLI--HLKDCSNLQSL--DFNFCIQISDGGLEHL 102
W+ + G +L ++ LSG+ +TD+G+I +KD NLQ L D N ++S+G L
Sbjct: 226 WVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVLRMDRNMISKLSEGSFVDL 285
Query: 103 RGLSNLTSLSFRRNNAITAQGMKAF--AGLINLVKLDLERCTRIH--------GGLVNLK 152
L L + +N IT AF + LV L+ R+H G V +
Sbjct: 286 PSLKEL----YLNDNGITEIFHGAFHRTPSLKLVHLENNYLRRVHPESFLQASGSGVEMM 341
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L + E ++ + D+ L L+ L +S +K+ L+G L L L
Sbjct: 342 HLQQNEIGRVEELRSLLDA-------LPMLRFLDLSHNKLEAIPFGALRGHGTLEQLYLN 394
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL--DSCGIGDEGLV 270
+ D+ A+ L L L L D F L L+ +++ +S D L
Sbjct: 395 QNRIRMIERDAFMAMPGLRELRLQNNSLHDQLPMPFWNLPGLKGIDISYNSFRRMDPNL- 453
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS---DGSLRKLAGLSSLK 327
L G+ +L+ L++S + + LE++N+SF +S + R L + L
Sbjct: 454 -LVGVPSLRRLDISGNTLSVIDAGAFTHTPMLETVNISFNELSLIHSATFRDLNHMFELD 512
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+ N ++ GL L H ++ + A+ L + NLR L+I LT
Sbjct: 513 AGNNKLQEFI-PGLPVAVERVNL-HGNMITQLPPPTTASQLWDLPNLRMLDISANQLTRL 570
Query: 388 GVKHIKDLSSLTLLNLSQN--CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
K L +L+L++N ++ D +L SGL+ L LN+ ++R+ + R PL+
Sbjct: 571 PRAVFKPTPQLRVLSLARNQLQSVDDGSL---SGLSRLEILNLQDNRVLALHERCFSPLE 627
Query: 446 NLRSLTLESCKV 457
NLR L L+ ++
Sbjct: 628 NLRELNLQGNRI 639
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 139/323 (43%), Gaps = 39/323 (12%)
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
L L NL+ L IS +++T A K +L +L+L + + SLS L L LNL
Sbjct: 551 LWDLPNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSLSGLSRLEILNL 610
Query: 236 --NRCQLSDDGCEKFSRLTNLESLNL-------------DSCGIGDE------GLVNLTG 274
NR + C FS L NL LNL DS + ++ +V ++
Sbjct: 611 QDNRVLALHERC--FSPLENLRELNLQGNRIEVLVDNLLDSNALLEQFDASRNSIVEISP 668
Query: 275 LCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
L + S+ LR L SGL L +++SF +++ S L +L+ L
Sbjct: 669 KAFRNSRSLQTLDLSSNQLRELPESLSGLAELRELDVSFNQLTELSPNVLVSWRNLEELK 728
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
+ ++ +L +L L +LDL +T LRN L+ L + L++ +
Sbjct: 729 VSNNKVNQLHQGSLRNLPLLQYLDLSSNELTLLEHGSLRNLPELQELVLADNKLSELKER 788
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR---ITSAGLRHLKPLKNL 447
+DL +L ++L QN NL + +V LN+S ++ + S GLR ++
Sbjct: 789 VFEDLPNLQAVHLQQN-NLRYISPYSFFRSPSIVYLNLSANQFRSLDSVGLRSVR----- 842
Query: 448 RSLTLESCKVTANDIKRLQSRDL 470
LE +T N I+++ L
Sbjct: 843 ---NLEVLDLTGNSIRKITPSPL 862
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 122/293 (41%), Gaps = 52/293 (17%)
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
NN + + + FA L N+++L L H GL E L+ W N + S ++
Sbjct: 78 NNFLPSLPGRTFAPL-NILRLMLR-----HNGL---------ERLSNGWLNDLDKSLVEI 122
Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
NL+S+ + L GL+KL + ++ L S L L Y+N+
Sbjct: 123 FIVERNLRSIPVDS----------LTGLRKLEAVTIQS--ENLKRLPDFSGLPKLRYINV 170
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
L + + F L +LE+L++ TG +L LE +GL
Sbjct: 171 QSGSLIELAPQYFRDLASLETLHV-------------TGSSSLNRLE--------AGL-- 207
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHL 353
+ L L+ INLS GIS LR GL +LK+L L +ITD G+ A+ + L L
Sbjct: 208 FNDLPKLQLINLSENGISWVHLRTFVGLPALKTLQLSGNKITDAGMIGRAVKDIHNLQVL 267
Query: 354 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
+ I+ + +L+ L + G+T+ SL L++L N
Sbjct: 268 RMDRNMISKLSEGSFVDLPSLKELYLNDNGITEIFHGAFHRTPSLKLVHLENN 320
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 159/394 (40%), Gaps = 42/394 (10%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQ--SLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
+L +D+S + +T K L+ SL N + DG L GLS L L+ +
Sbjct: 555 PNLRMLDISANQLTRLPRAVFKPTPQLRVLSLARNQLQSVDDGSLS---GLSRLEILNLQ 611
Query: 115 RNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
+N + A + F+ L NL +L+L+ R + L++ L LE + N I +
Sbjct: 612 -DNRVLALHERCFSPLENLRELNLQGNRIEVLVDNLLDSNAL--LEQFDAS-RNSIVEIS 667
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
K +L++L +S +++ + +SLS L L
Sbjct: 668 PKAFRNSRSLQTLDLSSNQLRE-------------------------LPESLSGLAELRE 702
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+++ QL++ NLE L + + + +L L L+ L+LS ++ +
Sbjct: 703 LDVSFNQLTELSPNVLVSWRNLEELKVSNNKVNQLHQGSLRNLPLLQYLDLSSNEL--TL 760
Query: 293 LRH--LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
L H L L L+ + L+ +S+ R L +L++++L + + +
Sbjct: 761 LEHGSLRNLPELQELVLADNKLSELKERVFEDLPNLQAVHLQQNNLRYISPYSFFRSPSI 820
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--CN 408
+L+L + + LR+ +NL L++ G + ++ L L L L N C
Sbjct: 821 VYLNLSANQFRSLDSVGLRSVRNLEVLDLTGNSIRKITPSPLRGLDWLVELKLDNNKICG 880
Query: 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
+ + + L L N SR+ R L+
Sbjct: 881 IQGEPFATMPRLRVLSMRNNQMSRVPEPIFRSLR 914
>gi|149173875|ref|ZP_01852504.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
gi|148847405|gb|EDL61739.1| hypothetical protein PM8797T_05540 [Planctomyces maris DSM 8797]
Length = 525
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 184/423 (43%), Gaps = 48/423 (11%)
Query: 92 IQISDGGLEHLRGLSNLTSLSFR-----RNNAITAQGMKAFAGLINLVKLDLERCTRI-H 145
+ ++D L L+ L + +L+ R + N T G++ L L LDL ++
Sbjct: 77 LPLADDDLTVLKELPEVQTLTLRGVHTIKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTD 136
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK 205
G+ +L+ L +LE L++ C TD+ K L+ LT+L++L++ + +T + L L +
Sbjct: 137 AGMRHLESLKQLEHLDLSGCRRFTDASGKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPE 196
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS-CGI 264
L L ++ +++ L + L + D+ +++ +L+SL + I
Sbjct: 197 LKHLAVKYSKGMWLNENTIVPLEKMPLEELEGMLIKDENLPLIAQMKSLKSLPFEQDRSI 256
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGS------ 316
D+ L LT + +K L + T+ S S L L L LE++++S ++G
Sbjct: 257 KDDQLSYLTHIRQIKKLNIVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDRSG 316
Query: 317 LRKLAGLSSLKSL------------------------NLDARQITDTGLAALTSLTGLTH 352
L LA + +LK L N+D Q T LA L ++ L
Sbjct: 317 LLALAKIPALKELGIGLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKD 376
Query: 353 LDLFGARITDSGAAYLRNFKNLRSLEICGG--------GLTDAGVKHIKDLSSLTLLNLS 404
L + A ++D A L K+L + G + +K +++L L L+L+
Sbjct: 377 LTVQIALVSDDLWATLGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLN 436
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 464
+TD+ L + L L ++N+ IT+AGL L+ L L+ L+ K+ +
Sbjct: 437 -GFPVTDEGLGYLGQCRTLERLGLNNAPITNAGLLQLRHLSQLKKLSFYGSKIDREPAEE 495
Query: 465 LQS 467
L
Sbjct: 496 LHQ 498
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 151/387 (39%), Gaps = 68/387 (17%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
+ G+ TD GL ++ L+ LD + Q++D G+ HL L L L T
Sbjct: 104 IKGNHFTDDGLRYVGQLKKLRYLDLSVNYQLTDAGMRHLESLKQLEHLDLSGCRRFTDAS 163
Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK-----WCN------------ 166
K+ A L +L L L + + L L L +L+ L +K W N
Sbjct: 164 GKSLAQLTSLRTLKLRQTSLTPDVLTALSQLPELKHLAVKYSKGMWLNENTIVPLEKMPL 223
Query: 167 ------CITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNL-------- 211
I D ++ ++ + +LKSL + + D ++YL ++++ LN+
Sbjct: 224 EELEGMLIKDENLPLIAQMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLNIVLTRGTSD 283
Query: 212 ------------------------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
EG P+ + L +L+ + +L L + + E
Sbjct: 284 TSQLIQLQALPELETLSISLGNSTEGDPLDRSGLLALAKIPALKELGIGLVNVPI--LEA 341
Query: 248 FSRLTNLESLNL--DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
S T ++ LNL D+ L L + LK L + V L + +LE I
Sbjct: 342 ISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWATLGQVKSLEEI 401
Query: 306 NLSF--------TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357
+ ++ S SL++L L LK L+L+ +TD GL L L L L
Sbjct: 402 SFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQCRTLERLGLNN 461
Query: 358 ARITDSGAAYLRNFKNLRSLEICGGGL 384
A IT++G LR+ L+ L G +
Sbjct: 462 APITNAGLLQLRHLSQLKKLSFYGSKI 488
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 119/277 (42%), Gaps = 23/277 (8%)
Query: 31 CALQDLCLGQYPG--VNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLKDCSNLQSLD 87
L+ + L + G + D+ + +IA Q SL S+ + D L +L ++ L+
Sbjct: 216 VPLEKMPLEELEGMLIKDENLPLIA-QMKSLKSLPFEQDRSIKDDQLSYLTHIRQIKKLN 274
Query: 88 FNFCIQISD-GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG 146
SD L L+ L L +LS N+ + +GL+ L K+ + I
Sbjct: 275 IVLTRGTSDTSQLIQLQALPELETLSISLGNSTEGDPLDR-SGLLALAKIPALKELGI-- 331
Query: 147 GLVNLKGL------MKLESLNIKW-CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199
GLVN+ L +++ LN+ + +D+ L ++ LK L + + V+D A
Sbjct: 332 GLVNVPILEAISHCTQVQKLNLNVDTSQFQPTDLAYLKEMSRLKDLTVQIALVSDDLWAT 391
Query: 200 LKGLQKLTLLNL--------EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
L ++ L ++ E P + L L L L L+LN ++D+G +
Sbjct: 392 LGQVKSLEEISFNWGWPPQKEPPPFSMTSLKQLQNLPRLKGLDLNGFPVTDEGLGYLGQC 451
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
LE L L++ I + GL+ L L LK L +++
Sbjct: 452 RTLERLGLNNAPITNAGLLQLRHLSQLKKLSFYGSKI 488
>gi|254410000|ref|ZP_05023780.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
gi|196183036|gb|EDX78020.1| Ras family, putative [Coleofasciculus chthonoplastes PCC 7420]
Length = 1115
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 36/341 (10%)
Query: 54 SQGSSLLSVDLSGSDVTD-----SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
SQ +L + LSG+ +T S L++L S L N Q+ E + L NL
Sbjct: 111 SQLVNLTQLSLSGNQLTQFPESISQLVNLTQLS----LSRNQLTQVP----ESISQLVNL 162
Query: 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCN 166
T L+ N Q ++ + L+NL +LDL + T++ + L L +L +L+
Sbjct: 163 TQLNLSYNQL--TQVPESISQLVNLTQLDLSVNKLTQVPESISQLVNLTQL-NLSYNQLT 219
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+++S +S L NL L +S +K+T + + L LT L+L G +T +S+S
Sbjct: 220 QVSES----ISQLVNLTQLSLSGNKLTQVSES-ISQLVNLTQLSLSGNKLTQVP-ESISQ 273
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD- 285
L +L L+L+ QL+ E S+L NL L+L S + +++ L NL L+LS
Sbjct: 274 LVNLTQLSLSDNQLTQ-VSESISQLVNLTQLDLSSNQLTQVS-ESISQLVNLTQLDLSSN 331
Query: 286 --TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
TQV S +S L NL +NLS ++ ++ L +L LNL Q+T +
Sbjct: 332 QLTQVSES----ISQLVNLTQLNLSINKLTQVP-ESISQLVNLTWLNLSDNQLTQVP-ES 385
Query: 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 384
++ L LT LDLFG +IT+ +L NL+ L++ L
Sbjct: 386 ISQLVNLTQLDLFGNKITEI-PDWLEELPNLKELDLRQNPL 425
>gi|115741868|ref|XP_793918.2| PREDICTED: F-box/LRR-repeat protein 20-like [Strongylocentrotus
purpuratus]
Length = 431
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 17/250 (6%)
Query: 64 LSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITA 121
+S + +TD+ L L D C L L+ ++C QISD G+E L RG S++ L + ++IT
Sbjct: 146 VSCTAITDNALKSLSDGCHLLSHLNISWCDQISDNGIEALVRGCSHIKVLILKGCHSITD 205
Query: 122 QGMKAFAGLI-NLVKLDLERCTRIH-GGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSG 178
+G+ NL L+++ C I G++ L KG L+SL + C +TD+ + S
Sbjct: 206 EGITHIGSHCKNLTTLNVQGCVLISDDGMIALAKGCRTLQSLCVSGCTHLTDNTLSAFSQ 265
Query: 179 L-TNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGS--LFYL 233
+K+L++S CS+ TD+G A + L ++LE C + S ALG L L
Sbjct: 266 FCPKIKTLEVSGCSQFTDNGFQALARTCIDLERMDLEECVLITDTALSYLALGCPMLQKL 325
Query: 234 NLNRCQL-SDDGCEKFS----RLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQ 287
L+ C+L +D+G +L+ + LD+C I D L +L G L+ +EL D Q
Sbjct: 326 TLSHCELITDEGIRHIGTSGCSTEHLQVIELDNCPLITDSSLEHLMGCQGLQRIELYDCQ 385
Query: 288 -VGSSGLRHL 296
+ +G+R L
Sbjct: 386 LITRAGIRRL 395
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 183/438 (41%), Gaps = 97/438 (22%)
Query: 67 SDVTDSGLIHLKDCSNLQSLD-FNFCIQISDGGLEHL--RGLSNLTSLSFRRNNAITAQG 123
+ V+ S I D SN Q +D FNF I +EH+ R L +LS ++T
Sbjct: 44 AQVSKSWNILALDGSNWQKVDLFNFQTDIEGPVVEHISKRCGGFLKNLSLHGCKSVTDDA 103
Query: 124 MKAFA-GLINLVKLDLERCTRI--HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GL 179
+ FA N+ L+LE C RI H + KL LN+ C ITD+ +K LS G
Sbjct: 104 LNTFADNCRNIEVLNLEDCKRITDHTAQSLSRYSKKLSQLNMVSCTAITDNALKSLSDGC 163
Query: 180 TNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
L L IS C +++D+GI A ++G + +L L+GC
Sbjct: 164 HLLSHLNISWCDQISDNGIEALVRGCSHIKVLILKGCH---------------------- 201
Query: 238 CQLSDDGCEKF-SRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295
++D+G S NL +LN+ C I D+G++ L
Sbjct: 202 -SITDEGITHIGSHCKNLTTLNVQGCVLISDDGMIALA---------------------- 238
Query: 296 LSGLTNLESINLS-FTGISDGSLRKLAGL-SSLKSLNLD-ARQITDTGLAALT-SLTGLT 351
G L+S+ +S T ++D +L + +K+L + Q TD G AL + L
Sbjct: 239 -KGCRTLQSLCVSGCTHLTDNTLSAFSQFCPKIKTLEVSGCSQFTDNGFQALARTCIDLE 297
Query: 352 HLDLFGAR-ITDSGAAYLR-NFKNLRSLEICGGGL-TDAGVKHIK----DLSSLTLLNLS 404
+DL ITD+ +YL L+ L + L TD G++HI L ++ L
Sbjct: 298 RMDLEECVLITDTALSYLALGCPMLQKLTLSHCELITDEGIRHIGTSGCSTEHLQVIELD 357
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIK 463
NC L IT + L HL + L+ + L C+ +T I+
Sbjct: 358 -NCPL-----------------------ITDSSLEHLMGCQGLQRIELYDCQLITRAGIR 393
Query: 464 RLQSRDLPNL---VSFRP 478
RL+++ LPN+ F P
Sbjct: 394 RLRTQ-LPNVKVHAYFAP 410
>gi|320165161|gb|EFW42060.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 641
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 105/233 (45%), Gaps = 5/233 (2%)
Query: 131 INLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
+N L+L + T I G GL L LN+ N I +GLT LK L +
Sbjct: 62 VNTTSLELNNNQITSISAGA--FTGLTALTYLNLN-SNSIRSISANAFTGLTALKHLPLG 118
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+++ D GL L L+L+ +T+ + ++L +L YL L+ QL++ F
Sbjct: 119 YNELADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVF 178
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
+ L+ L LNL+S I T L L L L Q+ S +GLT L+ + L
Sbjct: 179 AGLSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELF 238
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
I+ + +GLS+L L L + QIT A T L LT L L G R T
Sbjct: 239 NNQITAIAANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 104/261 (39%), Gaps = 25/261 (9%)
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
P + N SL+++ +++T GL LT YLN
Sbjct: 57 PTAVPVNTTSLELNNNQITSISAGAFTGLTALT------------------------YLN 92
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
LN + F+ LT L+ L L + D GL L L L Q+ S
Sbjct: 93 LNSNSIRSISANAFTGLTALKHLPLGYNELADISATAFAGLTALNALHLQSNQITSISAS 152
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+ LT L + L +++ + AGLS+L LNL++ QIT A T LT LT L
Sbjct: 153 AFASLTTLTYLRLDSNQLTNFAANVFAGLSALALLNLESNQITSISANAFTDLTALTLLY 212
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L +IT + L+ LE+ +T LS+LT L L N +T
Sbjct: 213 LQRNQITSIPTSAFTGLTALKDLELFNNQITAIAANTFSGLSALTQLYLFSN-QITSIAA 271
Query: 415 ELISGLTGLVSLNVSNSRITS 435
+GL L +L + +R T+
Sbjct: 272 NAFTGLPALTALALDGNRFTT 292
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 2/231 (0%)
Query: 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
N TSL NN IT+ AF GL L L+L + GL L+ L + + N
Sbjct: 63 NTTSLELN-NNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGY-N 120
Query: 167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
+ D +GLT L +L + +++T + L LT L L+ +T + +
Sbjct: 121 ELADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAG 180
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286
L +L LNL Q++ F+ LT L L L I TGL LK LEL +
Sbjct: 181 LSALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNN 240
Query: 287 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337
Q+ + SGL+ L + L I+ + GL +L +L LD + T
Sbjct: 241 QITAIAANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 23/229 (10%)
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
N SL L++ I TGL L L L+ + S +GLT L+ + L + +
Sbjct: 63 NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122
Query: 313 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 372
+D S AGL++L +L+L + QIT +A SLT LT+L L ++T+ A
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182
Query: 373 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------CNLTD-KTLELI---- 417
L L + +T DL++LTLL L +N LT K LEL
Sbjct: 183 ALALLNLESNQITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQI 242
Query: 418 --------SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
SGL+ L L + +++ITS L L +L L+ + T
Sbjct: 243 TAIAANTFSGLSALTQLYLFSNQITSIAANAFTGLPALTALALDGNRFT 291
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 1/183 (0%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
N LEL++ Q+ S +GLT L +NL+ I S GL++LK L L ++
Sbjct: 63 NTTSLELNNNQITSISAGAFTGLTALTYLNLNSNSIRSISANAFTGLTALKHLPLGYNEL 122
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
D A LT L L L +IT A+ + L L + LT+ LS
Sbjct: 123 ADISATAFAGLTALNALHLQSNQITSISASAFASLTTLTYLRLDSNQLTNFAANVFAGLS 182
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456
+L LLNL N +T + + LT L L + ++ITS L L+ L L + +
Sbjct: 183 ALALLNLESN-QITSISANAFTDLTALTLLYLQRNQITSIPTSAFTGLTALKDLELFNNQ 241
Query: 457 VTA 459
+TA
Sbjct: 242 ITA 244
>gi|343418611|emb|CCD19670.1| hypothetical protein, conserved in T. vivax [Trypanosoma vivax
Y486]
Length = 840
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 186/399 (46%), Gaps = 19/399 (4%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT--AQGMKAFAGLINLVKLDL 138
L+ L N C +I++ + L+ + SL N T +G+ GL L +L L
Sbjct: 405 ERLRRLSLNSCTRITN-----VSPLARMRSLEILNLNGCTGIVRGLHVLCGLTTLQELYL 459
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGI 197
+ L +L +L L++ C IT D+ PL+ + +L+ L ++ C+ + G+
Sbjct: 460 WQLCVDDAFLRDLTCHERLRRLSLNSCTRIT--DVSPLARMRSLEMLDLNGCTGIV-RGL 516
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L GL L L L PV A L L+ L L+LN C D +R+ +LE L
Sbjct: 517 HVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSLNSCTRITDV-SPLARMRSLEML 575
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 316
+L+ C GL L GL L+ L L V ++ LR L+ L ++L S T I+D S
Sbjct: 576 DLNDCTGIVRGLHELCGLTTLQELCLWQLCVDNAFLRDLTCHERLRRLSLNSCTRITDVS 635
Query: 317 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
LA + SL+ L+L+ GL L LT L L L+ + ++ L + LR
Sbjct: 636 --PLARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYLWQLCVDNAFLRDLTCHERLRR 693
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
L + V + + SL +L+L+ +C + L + GLT L L + + A
Sbjct: 694 LSL-NSCTRITDVSPLARMRSLEMLDLN-DCTGIVRGLHELCGLTTLQELYLWQLCVDDA 751
Query: 437 GLRHLKPLKNLRSLTLESC-KVT-ANDIKRLQSRDLPNL 473
LR L + LR L+L SC ++T + + R++S ++ +L
Sbjct: 752 FLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDL 790
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 218/493 (44%), Gaps = 64/493 (12%)
Query: 32 ALQDLCLGQYPGVNDKWM-DVIASQGSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFN 89
LQ+LCL V+D ++ D+ + LS++ S + +TD S L ++ +L+ L+ N
Sbjct: 98 TLQELCLANV-NVDDAFVRDLTCHERLRRLSLN-SCTRITDVSPLARMR---SLEMLNLN 152
Query: 90 FCIQISDGGLEHLRGLSNLTSL-------------------SFRR---NNAITAQGMKAF 127
C I GL L GL+ L L RR N+ +
Sbjct: 153 DCTGIV-RGLHELCGLTTLQELYLPKVYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPL 211
Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
A + +L LDL C I GL L GL L+ L + W C+ ++ ++ L+ L+ L +
Sbjct: 212 ARMRSLEMLDLNGCIGIVRGLHELCGLTTLQELYL-WQLCVDNAFLRDLTCHERLRRLSL 270
Query: 188 -SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
SC+++TD ++ L ++ L +L+L C L L L +L L L + + D
Sbjct: 271 NSCTRITD--VSPLARMRSLEMLDLNDCTGIVRGLHELCGLTTLQELYLWQLCVDDAFLR 328
Query: 247 KFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305
+ L L+L+SC I D + L + +L+ L+L+D GL L GLT L+ +
Sbjct: 329 DLTCHERLRRLSLNSCTRITD--VSPLARMRSLENLDLNDCTGIVRGLHVLCGLTTLQEL 386
Query: 306 NLSFTGISDGSLR-----------------------KLAGLSSLKSLNLDARQITDTGLA 342
L + D +R LA + SL+ LNL+ GL
Sbjct: 387 CLWQLCVDDAFVRDLTCHERLRRLSLNSCTRITNVSPLARMRSLEILNLNGCTGIVRGLH 446
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402
L LT L L L+ + D+ L + LR L + V + + SL +L+
Sbjct: 447 VLCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEMLD 505
Query: 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT-AN 460
L+ C + L ++ GLT L L ++ + A LR L + LR L+L SC ++T +
Sbjct: 506 LN-GCTGIVRGLHVLCGLTTLQELCLAEVPVNDALLRDLTCHERLRELSLNSCTRITDVS 564
Query: 461 DIKRLQSRDLPNL 473
+ R++S ++ +L
Sbjct: 565 PLARMRSLEMLDL 577
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 161/367 (43%), Gaps = 32/367 (8%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCS 190
+L LDL CT I GL L GL L+ L + W C+ D+ ++ L+ L+ L + SC+
Sbjct: 3 SLEMLDLNDCTGIVRGLHVLCGLTTLQELCL-WQLCVDDALLRDLTCHERLRELSLNSCT 61
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
++TD ++ L ++ L +LNL C L L L +L L L + D +
Sbjct: 62 RITD--VSPLARMRSLEILNLNDCTGIVRGLHVLCGLTTLQELCLANVNVDDAFVRDLTC 119
Query: 251 LTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L L+L+SC I D + L + +L+ L L+D GL L GLT L+ + L
Sbjct: 120 HERLRRLSLNSCTRITD--VSPLARMRSLEMLNLNDCTGIVRGLHELCGLTTLQELYLPK 177
Query: 310 TGISDGSLRKLAGLSSLKSLNLDA-RQITDT----------------------GLAALTS 346
+ D LR L L+ L+L++ +ITD GL L
Sbjct: 178 VYVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLARMRSLEMLDLNGCIGIVRGLHELCG 237
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L L L+ + ++ L + LR L + V + + SL +L+L+ +
Sbjct: 238 LTTLQELYLWQLCVDNAFLRDLTCHERLRRLSL-NSCTRITDVSPLARMRSLEMLDLN-D 295
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466
C + L + GLT L L + + A LR L + LR L+L SC + +
Sbjct: 296 CTGIVRGLHELCGLTTLQELYLWQLCVDDAFLRDLTCHERLRRLSLNSCTRITDVSPLAR 355
Query: 467 SRDLPNL 473
R L NL
Sbjct: 356 MRSLENL 362
>gi|321455314|gb|EFX66450.1| hypothetical protein DAPPUDRAFT_302690 [Daphnia pulex]
Length = 397
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 162/324 (50%), Gaps = 46/324 (14%)
Query: 152 KGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYLKGL-QKLT 207
+GL +ESL++ C +TD + + + LK L +S C ++TDS ++ L ++L
Sbjct: 91 QGLPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQ 150
Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCG-IG 265
L+L GC C +++ G + L +L+SLNL SC +
Sbjct: 151 ELDLGGC-----------------------CNVTNAGLLLIAWGLKSLKSLNLRSCWHVS 187
Query: 266 DEGLVNLTGLCN-------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFT-GISDG 315
D G+ +L GL + L+ L L D Q + L H+S GL L+SINLSF ISD
Sbjct: 188 DLGIASLAGLGSDAEGNLALEHLGLQDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDS 247
Query: 316 SLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGARITDSGAAYL-RNF 371
L+ LA + SL LNL + I+D G+A L + +T LD+ F RI D ++ +
Sbjct: 248 GLKYLAKMPSLAELNLRSCDNISDVGMAYLAEGGSRITSLDVSFCDRIDDQAVVHVAQGL 307
Query: 372 KNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLNVS 429
+L+ L + ++D G+ + L L LN+ Q +TD++++ ++ L L +++
Sbjct: 308 VHLKQLSLSACHVSDEGLIRVALSLLDLQTLNIGQCSRITDRSIQAVADHLRKLRCIDLY 367
Query: 430 N-SRITSAGLRHLKPLKNLRSLTL 452
++IT++GL + L L L L
Sbjct: 368 GCTKITTSGLEKIMKLPELSVLNL 391
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 146/299 (48%), Gaps = 23/299 (7%)
Query: 61 SVDLSGS-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRN 116
S+DLSG +VTD G+ H D L+ L+ + C QI+D L L + L L
Sbjct: 98 SLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQELDLGGC 157
Query: 117 NAITAQGMKAFA-GLINLVKLDLERCTRIHG-GLVNLKGL-------MKLESLNIKWCNC 167
+T G+ A GL +L L+L C + G+ +L GL + LE L ++ C
Sbjct: 158 CNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGLQDCQK 217
Query: 168 ITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
+TD + +S GL LKS+ +S C ++DSG+ YL + L LNL C ++ + L
Sbjct: 218 LTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNISDVGMAYL 277
Query: 225 SALGS-LFYLNLNRCQLSDDGC--EKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKC 280
+ GS + L+++ C DD L +L+ L+L +C + DEGL+ + L +L+
Sbjct: 278 AEGGSRITSLDVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRVALSLLDLQT 337
Query: 281 LELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L + +++ ++ ++ L L I+L T I+ L K+ L L LNL I
Sbjct: 338 LNIGQCSRITDRSIQAVADHLRKLRCIDLYGCTKITTSGLEKIMKLPELSVLNLGLWHI 396
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 251 LTNLESLNLDSC-GIGDEGLVN-LTG-LCNLKCLELS-DTQVGSSGLRHLSGL-TNLESI 305
L N+ESL+L C + D G+ + LT + LK L LS Q+ S L L+ L+ +
Sbjct: 93 LPNIESLDLSGCFNVTDIGIAHALTADVPTLKRLNLSLCKQITDSSLSKLAQYCRQLQEL 152
Query: 306 NLS-FTGISDGSLRKLA-GLSSLKSLNLDA-RQITDTGLAALTSL-------TGLTHLDL 355
+L +++ L +A GL SLKSLNL + ++D G+A+L L L HL L
Sbjct: 153 DLGGCCNVTNAGLLLIAWGLKSLKSLNLRSCWHVSDLGIASLAGLGSDAEGNLALEHLGL 212
Query: 356 FG-ARITDSGAAYLRN-FKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
++TD ++ K L+S+ + ++D+G+K++ + SL LNL N++D
Sbjct: 213 QDCQKLTDDALMHVSTGLKQLKSINLSFCLSISDSGLKYLAKMPSLAELNLRSCDNISDV 272
Query: 413 TLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
+ L G + + SL+VS RI + H+ + L +L+ L+L +C V+ + R+
Sbjct: 273 GMAYLAEGGSRITSLDVSFCDRIDDQAVVHVAQGLVHLKQLSLSACHVSDEGLIRV 328
>gi|219821258|gb|ACL37750.1| internalin A [Listeria monocytogenes]
Length = 739
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 178/368 (48%), Gaps = 53/368 (14%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L+ +NL ++F F Q++D + L+ L+ L + NN IT + A L NL L
Sbjct: 36 LEYLNNLTQINFGFN-QLTD--ITPLKDLTKLVDI-VMNNNQIT--DISPLANLTNLTGL 89
Query: 137 DL--ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L + T I L NL L +LE + T SD+ LSGLTNL+ L ++VTD
Sbjct: 90 TLFNNQITDIDA-LKNLTNLNRLE------LSSNTISDISALSGLTNLQQLSFG-NQVTD 141
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN---LNRCQLSDDGCEKFSRL 251
LK L LT LE +++ + +S L L L Q+SD L
Sbjct: 142 -----LKPLANLT--TLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGIL 192
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
TNL+ L+L+ + D G L L NL L+L++ Q+ S L LSGLT L + L
Sbjct: 193 TNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQ 248
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
IS+ + LAGL++L +L L+ Q+ D ++ +++L LT+L L+ I+D + + +
Sbjct: 249 ISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSL 302
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
L+ L ++D V + +L+++ L+ N IS LT L +L +
Sbjct: 303 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ---------ISDLTPLANL----T 347
Query: 432 RITSAGLR 439
RIT GL
Sbjct: 348 RITQLGLN 355
>gi|255567047|ref|XP_002524506.1| grr1, plant, putative [Ricinus communis]
gi|223536294|gb|EEF37946.1| grr1, plant, putative [Ricinus communis]
Length = 648
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 217/459 (47%), Gaps = 59/459 (12%)
Query: 18 RCLTEVSLEAF-RDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGL 74
R +T + L A R C +L+ L L P V D+ + +A + L +DL +T+ GL
Sbjct: 179 RGVTNLGLMAIARGCPSLRSLSLWDVPSVADEGLFEVAKECHLLEKLDLCNCPSITNKGL 238
Query: 75 IHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSN-LTSLSFRRNNAITAQGMKAF----A 128
I + ++CSNL SL+ C +I + G++ + N L S+S + + G+ +
Sbjct: 239 IAIAENCSNLISLNIESCPKIGNEGIQAIGKFCNKLQSISIKDCRLVGDHGVSSLLSSAT 298
Query: 129 GLINLVKL------DLERCTRIHGGLV---------------------NLKGLMKLESLN 161
+++ VKL D H G V N +GL KL SL
Sbjct: 299 NVLSKVKLQALNVTDFSLAVIGHYGKVVTNLVLSNLQHVSEKGFWVMGNAQGLQKLMSLT 358
Query: 162 IKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSG-IAYLKGLQKLTLLNLEGC--PV 216
I C ITD ++ ++ G TNLK + + C V+D+G +++ + L L LE C
Sbjct: 359 ISSCRGITDVSIEAIAKGCTNLKQMCLRKCCFVSDNGLVSFARAAGSLESLQLEECNRVT 418
Query: 217 TAACLDSLSALGS-LFYLNLNRCQLSDDGCEKF---SRLTNLESLNLDSC-GIGDEGLVN 271
+ + ++S G+ L L+L +C D + S ++L SL++ +C G G L
Sbjct: 419 QSGIVGAISNCGTKLKALSLVKCMGIRDVASQMVVSSPCSSLRSLSIRNCPGFGSASLAL 478
Query: 272 LTGLC-NLKCLELSD-TQVGSSGLRHL--SGLTNLESINLS-FTGISDGSLRKLAGL--S 324
+ LC L+ ++LS + SGL L S L +NLS ++D + LA +
Sbjct: 479 VGKLCPQLQHVDLSGLCAITDSGLLPLLESSEAGLVKVNLSGCMNLTDEVISALARIHGG 538
Query: 325 SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
SL+ LNLD R+ITD L A+T + L+ LD+ +TDSG A L + L +
Sbjct: 539 SLELLNLDGCRKITDASLKAITHNCLFLSDLDVSKCAVTDSGIATLSSADRLNLQVLSLS 598
Query: 383 GLTDAGVKHIKDLSSL--TLLNLS-QNC-NLTDKTLELI 417
G ++ K L L TL+ L+ QNC +++ T+EL+
Sbjct: 599 GCSEVSNKSFPFLKKLGRTLMGLNLQNCSSISSNTVELL 637
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 130/438 (29%), Positives = 201/438 (45%), Gaps = 59/438 (13%)
Query: 69 VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAITAQGMKA 126
VT+ GL+ + + C +L+SL ++D GL E + L L +IT +G+ A
Sbjct: 181 VTNLGLMAIARGCPSLRSLSLWDVPSVADEGLFEVAKECHLLEKLDLCNCPSITNKGLIA 240
Query: 127 FA-GLINLVKLDLERCTRIHGGLVNLKGLM--KLESLNIKWCNCITDSDMKPL-SGLTN- 181
A NL+ L++E C +I + G KL+S++IK C + D + L S TN
Sbjct: 241 IAENCSNLISLNIESCPKIGNEGIQAIGKFCNKLQSISIKDCRLVGDHGVSSLLSSATNV 300
Query: 182 LKSLQISCSKVTDSGIA----YLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLN 236
L +++ VTD +A Y K + L L NL+ + + L L L ++
Sbjct: 301 LSKVKLQALNVTDFSLAVIGHYGKVVTNLVLSNLQHVSEKGFWVMGNAQGLQKLMSLTIS 360
Query: 237 RCQ-LSDDGCEKFSR-LTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSD----TQV 288
C+ ++D E ++ TNL+ + L C + D GLV+ +L+ L+L + TQ
Sbjct: 361 SCRGITDVSIEAIAKGCTNLKQMCLRKCCFVSDNGLVSFARAAGSLESLQLEECNRVTQS 420
Query: 289 GSSGLRHLSGLTNLESINL-SFTGISDGSLRKL--AGLSSLKSLNLDARQITDTGLAALT 345
G G G T L++++L GI D + + + + SSL+SL++ R G A+L
Sbjct: 421 GIVGAISNCG-TKLKALSLVKCMGIRDVASQMVVSSPCSSLRSLSI--RNCPGFGSASL- 476
Query: 346 SLTG-----LTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+L G L H+DL G ITDSG L L S E + L
Sbjct: 477 ALVGKLCPQLQHVDLSGLCAITDSGLLPL-----LESSE-----------------AGLV 514
Query: 400 LLNLSQNCNLTDKTLELISGLTG--LVSLNVSNSR-ITSAGLRHLKP-LKNLRSLTLESC 455
+NLS NLTD+ + ++ + G L LN+ R IT A L+ + L L + C
Sbjct: 515 KVNLSGCMNLTDEVISALARIHGGSLELLNLDGCRKITDASLKAITHNCLFLSDLDVSKC 574
Query: 456 KVTANDIKRLQSRDLPNL 473
VT + I L S D NL
Sbjct: 575 AVTDSGIATLSSADRLNL 592
>gi|335427390|ref|ZP_08554321.1| Rab family protein [Haloplasma contractile SSD-17B]
gi|334895063|gb|EGM33243.1| Rab family protein [Haloplasma contractile SSD-17B]
Length = 1451
Score = 75.1 bits (183), Expect = 8e-11, Method: Composition-based stats.
Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 39/324 (12%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTL 208
+L L +++L W +D+ L+ L+NL SL +S ++V+D + + L LQ + L
Sbjct: 1097 DLSSLQNIKTLKNLWLENNNITDLSVLANLSNLDSLYLSNNQVSDLTPLINLANLQNVYL 1156
Query: 209 ---------------LNLEGCPVTAACLDSLSALGS---LFYLNLNRCQLSDDGCEKFSR 250
LNL G ++ + ++ L + L L+L+ Q++D +
Sbjct: 1157 SNNQVTTLPENFSNMLNLNGLHLSGNQITDVTPLSTAPALIELDLSNNQITD--LTNYDL 1214
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
LT L SLNL+ I D L L L L L L++ Q+ S L L GLTNL +
Sbjct: 1215 LTYLFSLNLNDNSISD--LTPLANLTKLSSLRLNNNQI--SDLTPLGGLTNLTHLYAENN 1270
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
ISD L L L+ + L L+ QI+D L AL+SLT L++L + +ITD L
Sbjct: 1271 AISD--LTPLTNLNKIWYLVLNGNQISD--LTALSSLTDLSYLRMNNNQITD-----LSP 1321
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+NLR ++ + + ++ + +S++ L L+ N ++D + +IS TGL +L + +
Sbjct: 1322 LQNLRLSDLQLNNNLISDLSYLANSTSISKLLLNNN-QISD--ISVISNFTGLRTLELDD 1378
Query: 431 SRITSAGLRHLKPLKNLRSLTLES 454
+ I+ L L NL L L +
Sbjct: 1379 NMISD--LSALSSQTNLELLYLRN 1400
>gi|87309591|ref|ZP_01091725.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
gi|87287355|gb|EAQ79255.1| probable G protein-coupled receptor [Blastopirellula marina DSM
3645]
Length = 328
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 6/236 (2%)
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
G++ L N +++D+ L +L+ LNL+ G+ D+ L + L L+ L L T
Sbjct: 68 GAVVELRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTA 127
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V S+G+ L+ LE + L+ I D +L + L +L L+L ITD G+ L SL
Sbjct: 128 VTSAGVAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSL 187
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L L L +T G A L++ +LR +++ + + ++ ++ +L L L +
Sbjct: 188 PHLKTLYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGR-T 246
Query: 408 NLTDKTL-ELISGL----TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
+LTD+ L E I L L L + IT L LK L L L + + T
Sbjct: 247 SLTDELLPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRET 302
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 84/171 (49%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ L L +L+ L ++ S VTD + + L +L L LE VT+A + +L++
Sbjct: 80 MTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAGVAALASC 139
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287
L L L C + DD E +L L L+L I D G+ +L L +LK L L DT
Sbjct: 140 EKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLRDTA 199
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338
V G L T+L I+LS I+ ++ L +L+ L L +TD
Sbjct: 200 VTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTD 250
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 5/219 (2%)
Query: 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
L+ + +++TD+ ++L LQ L LNL VT L+ + AL L L L R ++ G
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 245 CEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
+ LE L L C I D+ L + L L L LS+T + +G+ HL L +L++
Sbjct: 133 VAALASCEKLEELMLTECAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKT 192
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364
+ L T ++ L + L+ ++L I + + L S L L L +TD
Sbjct: 193 LYLRDTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDEL 252
Query: 365 AA-----YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398
+R +LR L I +TD + +K L+ L
Sbjct: 253 LPEFIDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAEL 291
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 103/236 (43%), Gaps = 10/236 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
+++D HL L +L L+ ++ +T + ++ L L L LER G+ L
Sbjct: 79 RMTDNAASHLVMLQSLQRLNLNQSG-VTDKSLEIMGALPELRSLYLERTAVTSAGVAALA 137
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
KLE L + C I D ++ + L L L +S + +TD+G+ +L+ L L L L
Sbjct: 138 SCEKLEELMLTEC-AIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLKTLYLR 196
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
VT L + L ++L+ ++ E NLE L L + DE L
Sbjct: 197 DTAVTGEGFAMLKSSTDLRLIDLSDNSINRSTIETLRSFPNLERLYLGRTSLTDELLPEF 256
Query: 273 --------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 320
L L +E+ T + L+ L+ L +L ++ TG++ G+ ++L
Sbjct: 257 IDTLIRFNPHLRGLAIMEVPITDNSLTPLKRLAELPDLAVVDFRETGVTRGAFQEL 312
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L ++ ++TD + L L L L+L + +TD + LRSL + +T AG
Sbjct: 73 LRANSARMTDNAASHLVMLQSLQRLNLNQSGVTDKSLEIMGALPELRSLYLERTAVTSAG 132
Query: 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
V + L L L++ C + D LE I L L L++S + IT AG+ HL+ L +L+
Sbjct: 133 VAALASCEKLEELMLTE-CAIQDDALETIGQLPALTLLSLSETPITDAGMFHLQSLPHLK 191
Query: 449 SLTLESCKVTANDIKRLQS 467
+L L VT L+S
Sbjct: 192 TLYLRDTAVTGEGFAMLKS 210
>gi|146104641|ref|XP_001469881.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134074251|emb|CAM72995.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 1208
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 33/290 (11%)
Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254
SG+ L L++L L++ P+ L +L+ SL + L+RC+ E RL +L
Sbjct: 422 SGVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCR-GVRSLEPLRRLEHL 480
Query: 255 ESLNLDSCGIGDEGLVNLTGLCNLK------CLELSD----TQVGSSGLRHLSGLTNLES 304
+SL+L + D L++LTG L+ C +++D + + R L T L +
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRGTLERLLMPRTLLSN 540
Query: 305 INLSFTGISDG-------SLRKLAG------LSSLKSLNLDARQITDTGLAALTSLTGLT 351
N+ G+ D SLR+L L++L+ LNL +TD G +AL + L
Sbjct: 541 ANMQHIGLCDKLVELHLQSLRQLTDIGVLKDLTALRVLNLSDNLVTDEGCSALHCMPSLQ 600
Query: 352 HLDLFGAR-ITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
L+L R IT AA+ R L SL++ ++DAGV +++ + L LNL C
Sbjct: 601 RLNLASCRCITSLAAAFTASGRCMHRLLSLDVSHTNISDAGVLCVQECTDLRYLNL---C 657
Query: 408 NLTD-KTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESC 455
++ + L + ++ L LN+ +R+T R+L +NLR L+L C
Sbjct: 658 GCSELRRLSWLQKMSSLRWLNLGGTRVTDEETKRYLPCTRNLRFLSLSGC 707
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 138/311 (44%), Gaps = 53/311 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD-GGLEHLRGLSNLTSLSFRRNN 117
L S+ L G VTD+ L+ L C+ L+ L + C QI+D L +LRG L L R
Sbjct: 480 LQSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITDLSFLANLRG--TLERLLMPR-T 536
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
++ M+ LV+L L+ +L+ L +D+ L
Sbjct: 537 LLSNANMQHIGLCDKLVELHLQ----------SLRQL----------------TDIGVLK 570
Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGS 229
LT L+ L +S + VTD G + L + L LNL C C+ SL+A +
Sbjct: 571 DLTALRVLNLSDNLVTDEGCSALHCMPSLQRLNLASC----RCITSLAAAFTASGRCMHR 626
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQV 288
L L+++ +SD G T+L LNL CG + L L + +L+ L L T+V
Sbjct: 627 LLSLDVSHTNISDAGVLCVQECTDLRYLNL--CGCSELRRLSWLQKMSSLRWLNLGGTRV 684
Query: 289 GSSGL-RHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITDTGLAAL 344
R+L NL ++LS G S S+R L L L+ LNL++ + D+ LA L
Sbjct: 685 TDEETKRYLPCTRNLRFLSLS--GCS--SVRSLFFAVKLPQLEYLNLESTSVADSELACL 740
Query: 345 TSLTGLTHLDL 355
L +L L
Sbjct: 741 CHCRKLRYLSL 751
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSL 326
G+ +L L L+CL + T + + L+ L+ ++LE I L G+ SL L L L
Sbjct: 423 GVRSLGSLKQLRCLHILHTPLHETFLQALTTCSSLECILLHRCRGVR--SLEPLRRLEHL 480
Query: 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFK-NLRSLEICGGGL 384
+SL+L +TDT L +LT T L L L R ITD ++L N + L L + L
Sbjct: 481 QSLSLHGLSVTDTDLLSLTGCTQLRQLVLDECRQITD--LSFLANLRGTLERLLMPRTLL 538
Query: 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
++A ++HI L L+L LTD + ++ LT L LN+S++ +T G L +
Sbjct: 539 SNANMQHIGLCDKLVELHLQSLRQLTD--IGVLKDLTALRVLNLSDNLVTDEGCSALHCM 596
Query: 445 KNLRSLTLESCK 456
+L+ L L SC+
Sbjct: 597 PSLQRLNLASCR 608
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 8/167 (4%)
Query: 190 SKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S VTD+ + L ++ L+L C CL L L +L L L + + +DG
Sbjct: 1000 SSVTDAMLEQLCVTFACVSCLDLTRC-TEVQCLSGLENLYALRELTLTQSSVDNDGVRVV 1058
Query: 249 SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
S LE L L C G+ D + +L GL L+ L ++ TQV + GL + L+ +N
Sbjct: 1059 SACETLEVLRLTECRGVSD--VNSLGGLRKLRVLCVARTQVTNQGLEGIGQCLALQYLNC 1116
Query: 308 S-FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 353
+ +SD + L+ L L L+L+ + D G+ + + L +
Sbjct: 1117 AECRYLSD--VNALSSLKHLIELHLERTDVVDAGICGVMRCSALQRV 1161
>gi|406833864|ref|ZP_11093458.1| hypothetical protein SpalD1_19557 [Schlesneria paludicola DSM
18645]
Length = 310
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 97/173 (56%)
Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
D+++K ++GL +L+S+ + S+VTD G+ L+ + +L L L +T A L L L
Sbjct: 123 DAELKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALSSTKITDAGLRHLLRLKK 182
Query: 230 LFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289
L L L + +SD+G + S L +L L+L I D+GL +L L L+ L+L T +
Sbjct: 183 LSRLQLAQTAVSDEGLKTISSLHSLSLLDLYGTRITDQGLKSLELLRKLEYLDLGGTAIS 242
Query: 290 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
++GL HL L NL ++ + T I D L +L +SSL+ L L+ Q T G A
Sbjct: 243 NAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLYLNMAQTTKEGRA 295
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 11/225 (4%)
Query: 162 IKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDS--GIAYLK---GLQKLTLLNLEGCP 215
+++ +C ++ P L+ L +L+ L SK+ DS G A LK GL+ L +N+
Sbjct: 85 VQFIDCKIPGEVFPVLASLNHLEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSINVVLSQ 144
Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGL 275
VT L L ++ L L L+ +++D G RL L L L + DEGL ++ L
Sbjct: 145 VTDDGLKELESMDRLESLALSSTKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTISSL 204
Query: 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+L L+L T++ GL+ L L LE ++L T IS+ L L L +L ++ + Q
Sbjct: 205 HSLSLLDLYGTRITDQGLKSLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQ 264
Query: 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380
I D+GL LTS++ L +L L A+ T G A R R+L C
Sbjct: 265 IGDSGLEQLTSISSLRYLYLNMAQTTKEGRADFR-----RALPKC 304
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 5/195 (2%)
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSD----DGCEK-FSRLTNLESLNLDSCGIGDEG 268
C + L++L L +L+ ++ D D K + L +L S+N+ + D+G
Sbjct: 90 CKIPGEVFPVLASLNHLEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSINVVLSQVTDDG 149
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L + L+ L LS T++ +GLRHL L L + L+ T +SD L+ ++ L SL
Sbjct: 150 LKELESMDRLESLALSSTKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTISSLHSLSL 209
Query: 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388
L+L +ITD GL +L L L +LDL G I+++G A+L NL ++ + G + D+G
Sbjct: 210 LDLYGTRITDQGLKSLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSG 269
Query: 389 VKHIKDLSSLTLLNL 403
++ + +SSL L L
Sbjct: 270 LEQLTSISSLRYLYL 284
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
F R+ ++ ++ C I E L L +L+ L+ ++++G S
Sbjct: 79 FFRVNGVQFID---CKIPGEVFPVLASLNHLEHLDFYNSKIGDSRF-------------- 121
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
D L+ +AGL SL+S+N+ Q+TD GL L S+ L L L +ITD+G +
Sbjct: 122 -----GDAELKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALSSTKITDAGLRH 176
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L K L L++ ++D G+K I L +TD+ L+ + L L L+
Sbjct: 177 LLRLKKLSRLQLAQTAVSDEGLKTIS-SLHSLSLLDLYGTRITDQGLKSLELLRKLEYLD 235
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ + I++AGL HL L NL ++ + ++ + +++L S
Sbjct: 236 LGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTS 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 59 LLSVDLSGSDVTDS--GLIHLKDCSNLQSL-DFNFCI-QISDGGLEHLRGLSNLTSLSFR 114
L +D S + DS G LK + L+SL N + Q++D GL+ L + L SL+
Sbjct: 106 LEHLDFYNSKIGDSRFGDAELKLMAGLKSLRSINVVLSQVTDDGLKELESMDRLESLALS 165
Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
+ IT G++ L L +L L + GL + + SL + ITD +K
Sbjct: 166 -STKITDAGLRHLLRLKKLSRLQLAQTAVSDEGLKTIS-SLHSLSLLDLYGTRITDQGLK 223
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
L L L+ L + + ++++G+A+L L L + + G + + L+ L+++ SL YL
Sbjct: 224 SLELLRKLEYLDLGGTAISNAGLAHLGVLPNLVTVGVRGTQIGDSGLEQLTSISSLRYLY 283
Query: 235 LNRCQLSDDGCEKFSR 250
LN Q + +G F R
Sbjct: 284 LNMAQTTKEGRADFRR 299
>gi|397563975|gb|EJK44014.1| hypothetical protein THAOC_37488 [Thalassiosira oceanica]
Length = 1585
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 143/451 (31%), Positives = 217/451 (48%), Gaps = 55/451 (12%)
Query: 38 LGQYPGV-NDKWMDVIASQGSSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQIS 95
L Q+ V D+ + I+ ++ ++LSG+D VTD G+ L CS LQ L+ + ++
Sbjct: 585 LSQWSLVATDECIHTISCHNHDIIHLNLSGADAVTDEGIQSLSKCSQLQELNLDNIFRLQ 644
Query: 96 DGGLEHLRGLSNLTSL--SFRRNNAITAQGMKA--FAGL----INLVKLDLERCTRIHGG 147
G LS +T + R + G+KA FA L LV L L C +I
Sbjct: 645 TG-------LSLVTERCCAIRDLSLCGCLGLKAPQFASLGQNARGLVSLKLSGCRQITPW 697
Query: 148 LVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYL-KG 202
+GL LE L+I +C+ +TD ++K LS T L+ L + C V+D G+ +L +G
Sbjct: 698 AFTKLFEGLKLLEILDISYCSLVTDQEIKLLSESATGLRCLNLRECKLVSDIGLTFLSQG 757
Query: 203 LQKLTLLNLEGCPVTAACLD-SLSALG----SLFYLNLNRCQL-SDDGCEKF-SRLTNLE 255
+L LNL + D +L +G SL LNL+ C+L SD G S L
Sbjct: 758 CTELVDLNLRRSELPFRVTDVALLQIGQGCRSLRALNLHGCELISDTGLSWLASWAKQLR 817
Query: 256 SLNLDSC-GIGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLS-GLTNLESINLS-FT 310
+NL +C I + G +L C NL L++ + V GLR L+ G + LE++N S
Sbjct: 818 HVNLANCTKITNAGARHLGDGCPNLISAVLTNVKRVSDVGLRCLANGCSKLETLNCSGLA 877
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLR 369
+SDG R+ GL L++ L A + T L +L++ G I+ +
Sbjct: 878 MLSDGVDREF-GLEGLQA------------LGASSCSTTLKNLNIRGCTLISTLSMRAIS 924
Query: 370 NFKNLRSLEICGGG-LTDAGVKHI-KDLSSLTLLNLSQ--NCNLTDKTLELISGLTGLVS 425
F NL L++ +T AG K I K LT L+LS +C LI+G LVS
Sbjct: 925 KFANLERLDLSSNNKVTIAGAKFIGKACRRLTHLSLSSCGDCICNGIVDALITGQINLVS 984
Query: 426 LNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
N+S+ +ITS L+ L ++L+S+ L +C
Sbjct: 985 ANLSSCKKITS--LKALATCRSLQSVDLTNC 1013
>gi|194755888|ref|XP_001960211.1| GF13252 [Drosophila ananassae]
gi|190621509|gb|EDV37033.1| GF13252 [Drosophila ananassae]
Length = 492
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 62/316 (19%)
Query: 7 SQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
S +FN LV R + +V + + R +L+DL LG +L S++LSG
Sbjct: 208 SPSLFNCLV-KRGIKKVQILSLRR-SLKDLVLGV----------------PALTSLNLSG 249
Query: 67 S-DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAI 119
+V D L H D NL++LD + C QI+D L +HLR NL +L I
Sbjct: 250 CFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLR---NLETLELGGCCNI 306
Query: 120 TAQGMKAFA-GLINLVKLDLERCTRIH-GGLVNLKGL--------MKLESLNIKWCNCIT 169
T G+ A GL L L+L C I G+ +L G ++LE L ++ C ++
Sbjct: 307 TNTGLLLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLS 366
Query: 170 DSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
D + ++ GLT+LKS+ +S C VTDSG+ +L + KL LNL C D++S +
Sbjct: 367 DEALGHIAQGLTSLKSINLSFCVSVTDSGLKHLARMPKLEQLNLRSC-------DNISDI 419
Query: 228 GSLFY---------LNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLVNLTGLC 276
G + L+++ C ++SD ++ L L SL+L+ C I D G++ +
Sbjct: 420 GMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKAL 479
Query: 277 NLKCLELSDTQVGSSG 292
+ EL + +G +
Sbjct: 480 H----ELENLNIGHAA 491
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 34/240 (14%)
Query: 254 LESLNLDSC------GIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLE- 303
L SLNL C +G V+L L L C +++DT +G +HL L LE
Sbjct: 242 LTSLNLSGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIA-QHLRNLETLEL 300
Query: 304 --SINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLT-----GLTHLDL 355
N++ TG+ L GL LK LNL + I+D G+ L + G L+
Sbjct: 301 GGCCNITNTGL----LLIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEY 356
Query: 356 FG----ARITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
G R++D ++ + +L+S L C +TD+G+KH+ + L LNL N
Sbjct: 357 LGLQDCQRLSDEALGHIAQGLTSLKSINLSFCVS-VTDSGLKHLARMPKLEQLNLRSCDN 415
Query: 409 LTDKTLE-LISGLTGLVSLNVSN-SRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465
++D + L G +G+ SL+VS +I+ L H+ + L LRSL+L C++T + + ++
Sbjct: 416 ISDIGMAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKI 475
>gi|290995979|ref|XP_002680560.1| predicted protein [Naegleria gruberi]
gi|284094181|gb|EFC47816.1| predicted protein [Naegleria gruberi]
Length = 263
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
++ + L L +++ Q+ G++++S + L S+N+S I D + ++ + L SLN+
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+I++ G+ L+ + LT L++ RI+D A Y+ K L SL I + D GVK+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245
Query: 392 IKDLSSLTLLNLSQNCN 408
I ++ LT L++ N N
Sbjct: 246 ISEMKQLTSLDIGDNPN 262
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379
++ + L SLN+ QI G+ ++ + L L++ I D GA Y+ K L SL I
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439
+++ GVK++ ++ LT LN+ N ++D+ + IS + L+SLN+ + I G++
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVN-RISDEEAKYISEMKQLISLNIGYNEIGDKGVK 244
Query: 440 HLKPLKNLRSLTL 452
++ +K L SL +
Sbjct: 245 YISEMKQLTSLDI 257
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%)
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
+S + L LN+ Q+ +G + S + L SLN+ IGD+G ++ + L L +
Sbjct: 126 ISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNI 185
Query: 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343
D ++ + G+++LS + L S+N+ ISD + ++ + L SLN+ +I D G+
Sbjct: 186 YDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKY 245
Query: 344 LTSLTGLTHLDL 355
++ + LT LD+
Sbjct: 246 ISEMKQLTSLDI 257
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 1/141 (0%)
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
V ++ + +S + L S+N++ I ++ ++ + L SLN+ +I D G ++ +
Sbjct: 118 VKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEM 177
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
LT L+++ I++ G YL K L SL I ++D K+I ++ L LN+ N
Sbjct: 178 KQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYN- 236
Query: 408 NLTDKTLELISGLTGLVSLNV 428
+ DK ++ IS + L SL++
Sbjct: 237 EIGDKGVKYISEMKQLTSLDI 257
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%)
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S + L SLN+ + I EG+ ++ + L L +S+ ++G G +++S + L S+N+
Sbjct: 127 SEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIY 186
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
IS+ ++ L+ + L SLN+ +I+D ++ + L L++ I D G Y+
Sbjct: 187 DNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYI 246
Query: 369 RNFKNLRSLEI 379
K L SL+I
Sbjct: 247 SEMKQLTSLDI 257
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
+ +L SLNI N I +K +S + L SL IS +++ D G Y+ +++LT LN+
Sbjct: 129 MKQLTSLNIT-NNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYISEMKQLTSLNIYD 187
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT 273
++ + LS + L LN+ ++SD+ + S + L SLN+ IGD+G+ ++
Sbjct: 188 NEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYIS 247
Query: 274 GLCNLKCLELSD 285
+ L L++ D
Sbjct: 248 EMKQLTSLDIGD 259
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 71/143 (49%)
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
S V + ++ +++LT LN+ + + +S + L LN++ ++ D G +
Sbjct: 115 ASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKGAKYI 174
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
S + L SLN+ I +EG+ L+ + L L + ++ +++S + L S+N+
Sbjct: 175 SEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLISLNIG 234
Query: 309 FTGISDGSLRKLAGLSSLKSLNL 331
+ I D ++ ++ + L SL++
Sbjct: 235 YNEIGDKGVKYISEMKQLTSLDI 257
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 355 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414
L + + + ++ K L SL I + GVK+I ++ L LN+S+N + DK
Sbjct: 113 LLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISEN-EIGDKGA 171
Query: 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474
+ IS + L SLN+ ++ I++ G+++L +K L SL + +++ + K + ++ L+
Sbjct: 172 KYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYIS--EMKQLI 229
Query: 475 S 475
S
Sbjct: 230 S 230
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 163 KW--CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
+W + + + K +S + L SL I+ +++ G+ Y+ +++L LN+ +
Sbjct: 111 RWLLASLVKTNQTKFISEMKQLTSLNITNNQICVEGVKYISEMKQLLSLNISENEIGDKG 170
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
+S + L LN+ ++S++G + S + L SLN+ I DE ++ + L
Sbjct: 171 AKYISEMKQLTSLNIYDNEISNEGVKYLSEMKQLTSLNIGVNRISDEEAKYISEMKQLIS 230
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINL 307
L + ++G G++++S + L S+++
Sbjct: 231 LNIGYNEIGDKGVKYISEMKQLTSLDI 257
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI G++++ + L SL+ N I +G K + + L L++ + G+ L
Sbjct: 141 QICVEGVKYISEMKQLLSLNISEN-EIGDKGAKYISEMKQLTSLNIYDNEISNEGVKYLS 199
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
+ +L SLNI N I+D + K +S + L SL I +++ D G+ Y+ +++LT L++
Sbjct: 200 EMKQLTSLNIG-VNRISDEEAKYISEMKQLISLNIGYNEIGDKGVKYISEMKQLTSLDIG 258
Query: 213 GCP 215
P
Sbjct: 259 DNP 261
>gi|124009437|ref|ZP_01694114.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
gi|123984985|gb|EAY24943.1| leucine-rich-repeat protein [Microscilla marina ATCC 23134]
Length = 966
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 263 GIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
G GD E L L GL L+ L LS + S ++ L+ +E +NLS I+D L
Sbjct: 92 GYGDLWGIEDLQPLVGLTQLQTLNLSSNHI--SDIKVLANFPTMEKLNLSQNTIAD--LS 147
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
LAGL SLK+LNL+ Q D G L SL LT L L +++D A L+ KNLRSL
Sbjct: 148 PLAGLESLKTLNLNWNQTLDLG--TLPSLPNLTTLYLNSCQLSDIQA--LKQHKNLRSLY 203
Query: 379 ICGGGLTDAGV--------------KHIKDLSSL----TLLNLSQNCNLTDKTLELISGL 420
+ L D HI+D S L TL LS N N K L ++GL
Sbjct: 204 LRSNQLADLSPLTNLETLAYLRLDENHIEDFSPLASLQTLEALSLNKNRI-KDLAPLAGL 262
Query: 421 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
L L ++ ++I S LKPL L+ LT+ +T N I+ +Q+
Sbjct: 263 ITLRKLYLNENKIIS-----LKPLAKLQKLTV--LTLTDNKIQDVQA 302
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 126/259 (48%), Gaps = 30/259 (11%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
D++PL GLT L++L +S + ++D I L + LNL T A L L+ L SL
Sbjct: 100 EDLQPLVGLTQLQTLNLSSNHISD--IKVLANFPTMEKLNLSQN--TIADLSPLAGLESL 155
Query: 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290
LNLN Q D G L NL +L L+SC + D + L NL+ L L Q+
Sbjct: 156 KTLNLNWNQTLDLGT--LPSLPNLTTLYLNSCQLSD--IQALKQHKNLRSLYLRSNQLAD 211
Query: 291 SGLRHLSGLTNLESI---NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 347
LS LTNLE++ L I D S LA L +L++L+L+ +I D LA L L
Sbjct: 212 -----LSPLTNLETLAYLRLDENHIEDFS--PLASLQTLEALSLNKNRIKD--LAPLAGL 262
Query: 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL---TLLNLS 404
L L L +I L+ L+ L + LTD ++ ++ L SL L+LS
Sbjct: 263 ITLRKLYLNENKIIS-----LKPLAKLQKLTVLT--LTDNKIQDVQALHSLLQLDTLDLS 315
Query: 405 QNCNLTDKTLELISGLTGL 423
QN + L+ ++ LTGL
Sbjct: 316 QNQIMDVSPLQSLARLTGL 334
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 131/292 (44%), Gaps = 49/292 (16%)
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
T +D+ PL+GL +LK+L ++ ++ D G +L +L
Sbjct: 142 TIADLSPLAGLESLKTLNLNWNQTLDLG--------------------------TLPSLP 175
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 288
+L L LN CQLSD + + NL SL L S + D L LT L L L L + +
Sbjct: 176 NLTTLYLNSCQLSD--IQALKQHKNLRSLYLRSNQLAD--LSPLTNLETLAYLRLDENHI 231
Query: 289 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348
L+ L LE+++L+ I D L LAGL +L+ L L+ +I L L L
Sbjct: 232 --EDFSPLASLQTLEALSLNKNRIKD--LAPLAGLITLRKLYLNENKI--ISLKPLAKLQ 285
Query: 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408
LT L L +I D A L + L +L++ + D V ++ L+ LT L L N
Sbjct: 286 KLTVLTLTDNKIQDVQA--LHSLLQLDTLDLSQNQIMD--VSPLQSLARLTGLGLGVN-- 339
Query: 409 LTDKTLELISGLTGLVSLNV---SNSRITSAGLRHLKPLKNLRSLTLESCKV 457
++ I L GL+ L + +N++IT + L L L LE+ +
Sbjct: 340 ----QIQDICPLAGLIELKILVLANNQITELPVHFFDKLHQLLVLELENNPI 387
>gi|366165824|ref|ZP_09465579.1| internalin A [Acetivibrio cellulolyticus CD2]
Length = 614
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 177/406 (43%), Gaps = 71/406 (17%)
Query: 83 LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
L+ LD N+ + S L L GL NLT L+ NA + + + L NL L L
Sbjct: 160 LEYLDLNYYVTTS-SDLICLEGLDNLTELNL---NAYKIRDLSHLSNLSNLQILKLNNGP 215
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLK 201
I + L GL KL +L I + N +T+ + +NL +L+I + D SGI+ +K
Sbjct: 216 DIK--MKPLCGLEKLHTL-IVYSNLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIK 272
Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLF---YLNL------------NRCQLSD---- 242
L KLTL ++ L +SA+G+L YLNL N LS+
Sbjct: 273 SLTKLTL-------ISNINLSDISAIGNLTNLSYLNLCNNNIVDTTPIGNLTNLSELYLY 325
Query: 243 ----DGCEKFSRLTNLESLNLDSCGIGD-----------------EGLVNLTGLCNLK-- 279
F+ LTNL +L L + I D +V++ LCNLK
Sbjct: 326 ENNISDVSSFASLTNLSTLYLHNNNIVDVSSLSNLTKLSDLTIDNNKIVDIAPLCNLKLG 385
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
C++ S + + +S +TN+ S+NL+ I D + L+ L+ L +LNL ITD
Sbjct: 386 CIDFSFNNI--VDISPISKVTNIYSVNLNNNNIVD--ISPLSNLTMLYTLNLSNNLITD- 440
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399
+ L +L ++HL+L ITD A L N + L + +TD V + +L
Sbjct: 441 -ITPLGNLNSVSHLNLINNPITDVSA--LGNMSRVFQLWLSKTKVTD--VSALSKCPNLK 495
Query: 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 445
L LS L TL+ VS+ + N I H P+K
Sbjct: 496 YLYLSDIPELDRTTLD---SFASDVSVYLDN-YIAPTPTPHYYPIK 537
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 153/330 (46%), Gaps = 57/330 (17%)
Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI 197
LE+C R G K+ I D+K NL+SL++ S GI
Sbjct: 92 LEKCIRYATG---------------KFTGDIYYGDVK------NLESLEVD-SAFDFEGI 129
Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
+L L+KLT ++E + L ++S+L L YL+LN + L NL L
Sbjct: 130 QFLTSLKKLTAKSIEES--YSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNLTEL 187
Query: 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-----------------VGSSGLRHLSGLT 300
NL++ I D L +L+ L NL+ L+L++ V S+ L +L+ +
Sbjct: 188 NLNAYKIRD--LSHLSNLSNLQILKLNNGPDIKMKPLCGLEKLHTLIVYSNLLTNLNNYS 245
Query: 301 NLESINLSFTGISDGSLRKLAGLSSLKSLN--LDARQITDTGLAALTSLTGLTHLDLFGA 358
L + NLS I G+L ++G+S++KSL I + ++A+ +LT L++L+L
Sbjct: 246 ELSASNLSTLEILSGNLNDISGISNIKSLTKLTLISNINLSDISAIGNLTNLSYLNLCNN 305
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
I D+ + N NL L + ++D V L++L+ L L N N+ D + +S
Sbjct: 306 NIVDTTP--IGNLTNLSELYLYENNISD--VSSFASLTNLSTLYLHNN-NIVD--VSSLS 358
Query: 419 GLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
LT L L + N++I + PL NL+
Sbjct: 359 NLTKLSDLTIDNNKIVD-----IAPLCNLK 383
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 43/324 (13%)
Query: 150 NLKGLMKLESLNIKWCNCITDS---DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206
+ +G+ L SL I +S D+ +S L L+ L ++ T S + L+GL L
Sbjct: 125 DFEGIQFLTSLKKLTAKSIEESYSLDLSAISSLKQLEYLDLNYYVTTSSDLICLEGLDNL 184
Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE-KFSRLTNLESLNLDSCGIG 265
T LNL + L LS L +L L LN +G + K L LE L+ + +
Sbjct: 185 TELNLNAYKIRD--LSHLSNLSNLQILKLN------NGPDIKMKPLCGLEKLH--TLIVY 234
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG--- 322
L NL L LS ++ S L +SG++N++S+ T IS+ +L ++
Sbjct: 235 SNLLTNLNNYSELSASNLSTLEILSGNLNDISGISNIKSLT-KLTLISNINLSDISAIGN 293
Query: 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382
L++L LNL I DT + +LT L+ L L+ I+D + + NL +L +
Sbjct: 294 LTNLSYLNLCNNNIVDT--TPIGNLTNLSELYLYENNISDVSS--FASLTNLSTLYLHNN 349
Query: 383 GLTD-AGVKHIKDLSSLT-----LLNLSQNCNLTDKTLEL----------ISGLTGLVSL 426
+ D + + ++ LS LT +++++ CNL ++ IS +T + S+
Sbjct: 350 NIVDVSSLSNLTKLSDLTIDNNKIVDIAPLCNLKLGCIDFSFNNIVDISPISKVTNIYSV 409
Query: 427 NVSNSRITSAGLRHLKPLKNLRSL 450
N++N+ I + PL NL L
Sbjct: 410 NLNNNNIVD-----ISPLSNLTML 428
>gi|440802726|gb|ELR23655.1| leucine rich repeat domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 634
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 180/393 (45%), Gaps = 79/393 (20%)
Query: 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSL-----SFRRNNAITAQGMKAFAGLINLVK 135
LQ+L+ ++C I++ GL++LRGL++LTSL SFR +T++G+K+ +L
Sbjct: 280 PQLQTLNLSYCPNITNHGLKYLRGLTSLTSLDLCSPSFR----VTSEGLKSLPS--SLRS 333
Query: 136 LDLERCTRI-HGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKV 192
LD+ ++ G+ L+ + L+ LNI CN +T+ M+ L L+++ +S C +
Sbjct: 334 LDISYMDKLTDEGIKALRAVCPDLQVLNISKCNKVTNDGMRFLPA--KLRTIFLSHCYNI 391
Query: 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD GIA L V L++ + + L+DDG R
Sbjct: 392 TDEGIANLA--------------VAVPLLEN---------FHFSYSSLTDDGVRHLPR-- 426
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L++LNL C ++ + G+RHL + ++ S+ I
Sbjct: 427 ALKALNLSFC-----------------------PKLTNEGMRHLPPHLHTLLLSYSYK-I 462
Query: 313 SDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDL-FGARITDSGAAYLRN 370
+D LR L S+ +L L +ITD GL L L LDL R++D G + L
Sbjct: 463 TDEGLRALP--PSIATLKLSRFFEITDDGLQHLP--PALRSLDLSLCDRVSDQGMSRLPP 518
Query: 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430
+L C G+TDAGV + SL L+LS ++TD L + L SLN+S+
Sbjct: 519 TLAELNLSRC-DGITDAGVAQLP--RSLGKLDLSFTKHVTDACLRSLP--KALTSLNLSS 573
Query: 431 -SRITSAGLRHLKPLKNLRSLTLESCKVTANDI 462
IT L L PL +L L L C+ + I
Sbjct: 574 CPEITGEALADL-PL-SLSHLFLSHCEKVTDKI 604
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 40/270 (14%)
Query: 28 FRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 87
F L+ + L + D+ + +A L + S S +TD G+ HL L++L+
Sbjct: 375 FLPAKLRTIFLSHCYNITDEGIANLAVAVPLLENFHFSYSSLTDDGVRHLPRA--LKALN 432
Query: 88 FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI-HG 146
+FC ++++ G+ HL + LS+ + IT +G++A I +K L R I
Sbjct: 433 LSFCPKLTNEGMRHLPPHLHTLLLSY--SYKITDEGLRALPPSIATLK--LSRFFEITDD 488
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAY------ 199
GL +L L SL++ C+ ++D M L L L +S C +TD+G+A
Sbjct: 489 GLQHLPP--ALRSLDLSLCDRVSDQGMSRLP--PTLAELNLSRCDGITDAGVAQLPRSLG 544
Query: 200 --------------LKGLQK-LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDD 243
L+ L K LT LNL CP +T L L SL +L L+ C+ D
Sbjct: 545 KLDLSFTKHVTDACLRSLPKALTSLNLSSCPEITGEALADLPL--SLSHLFLSHCEKVTD 602
Query: 244 GCEKFSRLTN-LESLNLDSC-GIGDEGLVN 271
F+ L LE+L++ SC G+ ++ L++
Sbjct: 603 KI--FTSLPRPLETLDISSCSGVVEKYLLD 630
>gi|46445832|ref|YP_007197.1| F-box protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399473|emb|CAF22922.1| putative F-box protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 329
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
+TD+ L+ LK+C NL+ L C ++D GL HL L L L+ + +T G+
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 129 GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
LI L LDL+ C ++ GL L+ L+ L+ LN+K C+ +TD + L L L+ L +
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQHLDL 316
Query: 188 S-CSKVTDSGIAY 199
C+ +TD+G+A+
Sbjct: 317 DGCNNLTDAGLAH 329
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSL 317
D+ + D L+ L NLK L+L + + GL HL+ L L+ +NLS ++D L
Sbjct: 193 DNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGL 252
Query: 318 RKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLR 375
L L +L+ L+L ++TD GLA L L L HL+L G +TD G A+LR L+
Sbjct: 253 AHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAHLRPLVALQ 312
Query: 376 SLEICG-GGLTDAGVKH 391
L++ G LTDAG+ H
Sbjct: 313 HLDLDGCNNLTDAGLAH 329
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 293 LRHLSGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGL 350
L H S +E+I+ S ++D L L +LK L L A R +TD GLA L L L
Sbjct: 179 LNHFSN--EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEAL 236
Query: 351 THLDLFGA-RITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCN 408
HL+L +TD+G A+L L+ L++ G LTDAG+ ++ L +L LNL N
Sbjct: 237 KHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDN 296
Query: 409 LTDKTLELISGLTGLVSLNVSN-SRITSAGLRH 440
LTD L + L L L++ + +T AGL H
Sbjct: 297 LTDIGLAHLRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 5/145 (3%)
Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQI-SCSKVTDSGIAYLKGLQKLTLLNLEGC 214
++E+++ +TD+ + L NLK LQ+ +C +TD G+A+L L+ L LNL C
Sbjct: 185 EIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSEC 244
Query: 215 P-VTAACLDSLSALGSLFYLNLNRC-QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVN 271
+T A L L+ L +L YL+L C +L+D G + L L+ LNL C + D GL +
Sbjct: 245 DNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLTDIGLAH 304
Query: 272 LTGLCNLKCLELSD-TQVGSSGLRH 295
L L L+ L+L + +GL H
Sbjct: 305 LRPLVALQHLDLDGCNNLTDAGLAH 329
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 360 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
+TD+ L+N KNL+ L++ LTD G+ H+ L +L LNLS+ NLTD L ++
Sbjct: 197 LTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKHLNLSECDNLTDAGLAHLT 256
Query: 419 GLTGLVSLNVSN-SRITSAGLRHLKPLKNLRSLTLESC 455
L L L++ +++T AGL L+PL L+ L L+ C
Sbjct: 257 LLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGC 294
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Query: 102 LRGLSN-LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLES 159
L SN + ++ F N +T + NL L L+ C + GL +L L L+
Sbjct: 179 LNHFSNEIEAIHFSDNVYLTDAHLLTLKNCKNLKVLQLQACRNLTDVGLAHLAPLEALKH 238
Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VT 217
LN+ C+ +TD+ + L+ L L+ L + C+K+TD+G+A L+ L L LNL+GC +T
Sbjct: 239 LNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKGCDNLT 298
Query: 218 AACLDSLSALGSLFYLNLNRC-QLSDDG 244
L L L +L +L+L+ C L+D G
Sbjct: 299 DIGLAHLRPLVALQHLDLDGCNNLTDAG 326
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 57 SSLLSVDLSGSD-VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
+L ++LS D +TD+GL HL LQ LD C +++D GL LR L L L+ +
Sbjct: 234 EALKHLNLSECDNLTDAGLAHLTLLIALQYLDLKGCAKLTDAGLARLRPLVALQHLNLKG 293
Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRI 144
+ +T G+ L+ L LDL+ C +
Sbjct: 294 CDNLTDIGLAHLRPLVALQHLDLDGCNNL 322
>gi|326436437|gb|EGD82007.1| hypothetical protein PTSG_11905 [Salpingoeca sp. ATCC 50818]
Length = 1127
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 27/454 (5%)
Query: 23 VSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT---------DSG 73
V L FR + ++ + Y GV ++ + + +++ ++DL+G+D+T D+
Sbjct: 262 VWLLQFRWDTVTNITIRGYEGV--EFPLAVLNAMTNVHTIDLAGNDITRLVPTNAAVDNK 319
Query: 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
L D ++ +LD +S+ L + NLT L++ N + FA NL
Sbjct: 320 NFTLGD--SITTLDVTRN-SLSELPQATLAAMPNLTHLTWD-GNQLAEIEPGVFAATTNL 375
Query: 134 VKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
L L R RI G +L L L+ + N I+ + +GL ++ L ++
Sbjct: 376 TTLSL-RDNRILNVVAGTFAHLNSLRDLDLSD----NRISSVAVDAFAGLFSVVVLHLND 430
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
++++ L L L+L +++ + + L SL L+L + + + F+
Sbjct: 431 NRISSVVAHTFADLVSLRELDLSNNRISSIAAFAFAGLTSLVELHLGNNTVFEVVADAFA 490
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L++L L+L + I + + L +L L LS+ ++ S SGLT+L ++++ F
Sbjct: 491 DLSSLPKLDLSNNRISNVSALAFADLTSLTELRLSNNRISSIVENAFSGLTSLMTLDVHF 550
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 369
IS L L+SLNLD + +LT L+HL L R T +
Sbjct: 551 NRISTLDENALISTFKLESLNLDHNPVDTFPPRLFVNLTRLSHLRLTSTRATTLPTSLFE 610
Query: 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429
+ LR L + T+ V L+ L L L+ N ++T L + LT L L +S
Sbjct: 611 HNTRLRELWLFHNRFTEIEVGTFDKLTRLVFLTLTGN-DITHLPSMLFARLTRLKELYIS 669
Query: 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
N+ + + + L++L +LTL ++ ND+
Sbjct: 670 NNDVRTVDPNAFRGLESLTTLTLVRNRI--NDLH 701
>gi|290980573|ref|XP_002673006.1| predicted protein [Naegleria gruberi]
gi|284086587|gb|EFC40262.1| predicted protein [Naegleria gruberi]
Length = 361
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
L G+ +LK + + G G++ + L L +++S+ I G ++ L LS L L +
Sbjct: 110 LQGMKDLKEVWIYKQLKGVKGIKKIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRI 169
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---- 387
I D + ++ + LT LDL RI D G YL +NL SL +CG LTD
Sbjct: 170 GNNSIFDDDIKMISEMKQLTKLDLSNCRIMD-GVQYLSKLENLTSLRLCGNRLTDERVES 228
Query: 388 --------------------GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
G K I +++ LT LN+ QN + ++ + L L LN
Sbjct: 229 ISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQQNR--ISQGVKYLEKLDRLTDLN 286
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+S ++I G+ + + L LT+ K++ K L
Sbjct: 287 ISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTL 324
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 39/312 (12%)
Query: 149 VNLKGLMKLESLN----IKWCNCITDSDM------KPLSGLTNLKSLQISCSKVTDSGIA 198
+NLK L K + LN +K N S + + L G+ +LK + I GI
Sbjct: 73 INLKSLAKSQYLNRIVSLKTVNSFDGSIIDNVELCEILQGMKDLKEVWIYKQLKGVKGIK 132
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ L++LT+L++ + + L+ L L L + + DD + S + L L+
Sbjct: 133 KIGSLKQLTILDVSYNDIGYGGVKWLTQLSQLTELRIGNNSIFDDDIKMISEMKQLTKLD 192
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
L +C I D G+++LS L NL S+ L ++D +
Sbjct: 193 LSNCRIMD-------------------------GVQYLSKLENLTSLRLCGNRLTDERVE 227
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
++ L L L + Q+ G ++ ++T LT L++ RI+ G YL L L
Sbjct: 228 SISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQQNRIS-QGVKYLEKLDRLTDLN 286
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I + D GV I +++ LT L + N ++++ + + L L L++S++ +++
Sbjct: 287 ISKNKIGDTGVIIISEMNQLTKLTIRDN-KISEEGAKTLGLLQKLTYLDISDNSVSNVTA 345
Query: 439 RHLKPLKNLRSL 450
++ KN++SL
Sbjct: 346 NSMQ--KNMKSL 355
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 6/196 (3%)
Query: 94 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153
I GG++ L LS LT L NN+I +K + + L KLDL C RI G+ L
Sbjct: 150 IGYGGVKWLTQLSQLTELRIG-NNSIFDDDIKMISEMKQLTKLDLSNC-RIMDGVQYLSK 207
Query: 154 LMKLESLNIKWC-NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
L L SL + C N +TD ++ +S L L L I +++ G + + +LT LN++
Sbjct: 208 LENLTSL--RLCGNRLTDERVESISNLKQLTELYIGENQLGTEGAKSIGNMTQLTRLNIQ 265
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
++ + L L L LN+++ ++ D G S + L L + I +EG L
Sbjct: 266 QNRISQG-VKYLEKLDRLTDLNISKNKIGDTGVIIISEMNQLTKLTIRDNKISEEGAKTL 324
Query: 273 TGLCNLKCLELSDTQV 288
L L L++SD V
Sbjct: 325 GLLQKLTYLDISDNSV 340
>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa]
gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]
Length = 1228
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 146/320 (45%), Gaps = 49/320 (15%)
Query: 83 LQSLD--FNFCIQISDG-GLEHLRG-LSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137
LQSLD +N + S+ G E L L L L RN +G + F GL L LD
Sbjct: 97 LQSLDLSYNGLVGCSENEGFEVLSSKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLD 156
Query: 138 LERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
L GL L L KLE+L++ C DS ++G ++LKSL +S ++VT SG
Sbjct: 157 LSDNQLTGSGLKVLSSRLKKLENLHLSANQC-NDSIFSSITGFSSLKSLDLSYNEVTGSG 215
Query: 197 IAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS--------DDGCEK 247
+ L L++L L+L + SL+ SL LNL+ QL+ +G
Sbjct: 216 LKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYS 275
Query: 248 F------------------------SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
F S L NLE L+L S + + L +L+G LK L+L
Sbjct: 276 FLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDL 335
Query: 284 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
S + GS+GL+ GL NLE + L F ++ L L+G S+LKSL+L + T +
Sbjct: 336 SYNKFTGSTGLK---GLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGS--- 389
Query: 343 ALTSLTGLTHLDLFGARITD 362
L GL +L+ TD
Sbjct: 390 --IGLKGLRNLETLNLEYTD 407
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 147/309 (47%), Gaps = 17/309 (5%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR 115
SSL S+DLS ++VT SGL L L++LD + Q +D L G S+L SL+
Sbjct: 199 SSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLS-DNQCNDSIFSSLTGFSSLKSLNLSY 257
Query: 116 NN-------AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI 168
N +I G +F + + G V + GL LE L++ + N +
Sbjct: 258 NQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHL-YSNKL 316
Query: 169 TDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
++ + LSG + LKSL +S +K T G LKGL+ L L L + L SLS
Sbjct: 317 NNNILSSLSGFSTLKSLDLSYNKFT--GSTGLKGLRNLEELYLGFNKFNNSILSSLSGFS 374
Query: 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQ 287
+L L+L+ + + G L NLE+LNL+ + L+ +L L +LK L S ++
Sbjct: 375 TLKSLDLSNNKFT--GSIGLKGLRNLETLNLEYTDFKESILIESLGALPSLKTLYASYSK 432
Query: 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTS 346
G + LS ++LE + L ++ + LR + LS+LK L+L + T A
Sbjct: 433 FKHFG-KGLSNSSSLEEVFLYYSYLPASFLRNIGHLSTLKVLSLAGVDFSSTLPAEGWCE 491
Query: 347 LTGLTHLDL 355
L L HL L
Sbjct: 492 LKNLEHLFL 500
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 249 SRLTNLESLNLDSCGIG-DEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESI 305
S+L LE L+L D+G+++ GL LK L+LSD Q+ SGL+ LS L LE++
Sbjct: 121 SKLRKLEVLDLTRNRFNNDKGILSCFNGLSALKSLDLSDNQLTGSGLKVLSSRLKKLENL 180
Query: 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSG 364
+LS +D + G SSLKSL+L ++T +GL L+S L L +LDL + DS
Sbjct: 181 HLSANQCNDSIFSSITGFSSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSI 240
Query: 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-------NLTDKTLELI 417
+ L F +L+SL + LT + + I+ + L ++ N L+
Sbjct: 241 FSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLV 300
Query: 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459
SGL L L++ ++++ + L L L+SL L K T
Sbjct: 301 SGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTG 342
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 160/348 (45%), Gaps = 34/348 (9%)
Query: 57 SSLLSVDLSGSDVTDSGLI----HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
S+L S+DLS + +T SGL LK NL L N C +D + G S+L SL
Sbjct: 150 SALKSLDLSDNQLTGSGLKVLSSRLKKLENLH-LSANQC---NDSIFSSITGFSSLKSLD 205
Query: 113 FRRNNAITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
N +T G+K + L L LDL +L G L+SLN+ + N +T S
Sbjct: 206 LSY-NEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSY-NQLTGS 263
Query: 172 DMKPLSGLTNLKSLQIS-------CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDS 223
M + LQ + S SG L GL+ L L+L + L S
Sbjct: 264 SMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNNNILSS 323
Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
LS +L L+L+ + + G L NLE L L + L +L+G LK L+L
Sbjct: 324 LSGFSTLKSLDLSYNKFT--GSTGLKGLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDL 381
Query: 284 SDTQV-GSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL 341
S+ + GS GL+ GL NLE++NL +T + L L L SLK+L + G
Sbjct: 382 SNNKFTGSIGLK---GLRNLETLNLEYTDFKESILIESLGALPSLKTLYASYSKFKHFG- 437
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389
L++ + L + L+ + + A++LRN +L +L++ L+ AGV
Sbjct: 438 KGLSNSSSLEEVFLYYSYLP---ASFLRNIGHLSTLKV----LSLAGV 478
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 18/295 (6%)
Query: 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL 108
V+ S +L + L + + ++ L L S L+SLD ++ GL+ LR L L
Sbjct: 296 FQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEEL 355
Query: 109 TSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
L F + NN+I + + +G L LDL G + LKGL LE+LN+++ +
Sbjct: 356 Y-LGFNKFNNSI----LSSLSGFSTLKSLDLS--NNKFTGSIGLKGLRNLETLNLEYTDF 408
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK---LTLLNLEGCPVTAACLDSL 224
++ L L +LK+L S SK G KGL L + L + A+ L ++
Sbjct: 409 KESILIESLGALPSLKTLYASYSKFKHFG----KGLSNSSSLEEVFLYYSYLPASFLRNI 464
Query: 225 SALGSLFYLNLNRCQLSDD-GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283
L +L L+L S E + L NLE L L + L L +L+ L+L
Sbjct: 465 GHLSTLKVLSLAGVDFSSTLPAEGWCELKNLEHLFLSRNNLKGVLPPCLGNLSSLRSLDL 524
Query: 284 SDTQV-GSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQI 336
SD Q+ G+ L HLS L LE +++S+ S LS+LK D ++
Sbjct: 525 SDNQLEGNIALSHLSHLPQLEYLSVSYNHFQVPKSFGSFMNLSNLKFFACDNNEL 579
>gi|87307225|ref|ZP_01089370.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
gi|87289965|gb|EAQ81854.1| hypothetical protein DSM3645_16920 [Blastopirellula marina DSM
3645]
Length = 378
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+NR S D + + +L + DE L L + N+ + L T+V +GL
Sbjct: 239 INRVAQSSDA--------KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLE 290
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
HL+GL LE +NL+ T ++D LR LA L LNL A +++D G+ L SL L HL
Sbjct: 291 HLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLY 350
Query: 355 LFGARITDSGAAYL 368
L+ + T A L
Sbjct: 351 LWQTKATPESAKQL 364
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%)
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342
LSD V L L + N+ INL T ++D L LAGL L+ LNL ++TD+GL
Sbjct: 255 LSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLR 314
Query: 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 392
L + L++L+L+ ++D+G +L + +LR L + T K +
Sbjct: 315 YLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL 364
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ +LS + D +L L + ++ +NL ++TD GL L L L L+L ++TDS
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G YL + L L + ++DAG+ H+ L SL L L Q + +L + + GL
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGL 371
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419
+ D A LR N+ + + G +TDAG++H+ L L LNL++ +TD L ++
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKT-KVTDSGLRYLAA 318
Query: 420 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 473
L LN+ + ++ AG+ HL L +LR L L K T K+L S +P L
Sbjct: 319 CEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQL-SAAIPGL 371
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+TD+ ++ L+GL L+ L ++ +KVTDSG+ YL +KL+ LNL V+ A +D L +L
Sbjct: 284 VTDAGLEHLAGLKQLERLNLAKTKVTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSL 343
Query: 228 GSLFYLNLNRCQLSDDGCEKFS 249
SL +L L + + + + ++ S
Sbjct: 344 PSLRHLYLWQTKATPESAKQLS 365
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264
K+ +L PV L L +G++ +NL +++D G E + L LE LNL +
Sbjct: 249 KVVTYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKV 308
Query: 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGL 323
D GL L L L L T+V +G+ HL L +L + L T + S ++L A +
Sbjct: 309 TDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAI 368
Query: 324 SSLK 327
LK
Sbjct: 369 PGLK 372
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
+ D + PL + N+ + + ++VTD+G+ +L GL++L LNL VT + L L+A
Sbjct: 260 VHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDSGLRYLAAC 319
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTG 274
L YLNL ++SD G + L +L L L E L+
Sbjct: 320 EKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSA 366
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S V D +A L+ + + +NL G VT A L+ L+ L L LNL + +++D
Sbjct: 252 TYHLSDKPVHDEALAPLRKIGNVVEINLMGTEVTDAGLEHLAGLKQLERLNLAKTKVTDS 311
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303
G + L LNL + + D G+ +L L +L+ L L T+ + LS
Sbjct: 312 GLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYLWQTKATPESAKQLSAAIPGL 371
Query: 304 SINL 307
+NL
Sbjct: 372 KVNL 375
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L ++L+ + VTDSGL +L C L L+ + ++SD G++HL L +L L + A
Sbjct: 298 LERLNLAKTKVTDSGLRYLAACEKLSYLNL-YATEVSDAGIDHLYSLPSLRHLYLWQTKA 356
Query: 119 ITAQGMKAFAGLINLVKLDL 138
T + K + I +K++L
Sbjct: 357 -TPESAKQLSAAIPGLKVNL 375
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110
V S + +++ LS V D L L+ N+ ++ +++D GLEHL GL L
Sbjct: 242 VAQSSDAKVVTYHLSDKPVHDEALAPLRKIGNVVEINL-MGTEVTDAGLEHLAGLKQLER 300
Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
L+ + +T G++ A L L+L G+ +L L L L + W T
Sbjct: 301 LNLAKTK-VTDSGLRYLAACEKLSYLNLYATEVSDAGIDHLYSLPSLRHLYL-WQTKATP 358
Query: 171 SDMKPLSG 178
K LS
Sbjct: 359 ESAKQLSA 366
>gi|374293090|ref|YP_005040125.1| hypothetical protein AZOLI_2723 [Azospirillum lipoferum 4B]
gi|357425029|emb|CBS87910.1| Conserved protein of unknown function; Leucine-rich repeat domain
[Azospirillum lipoferum 4B]
Length = 1026
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 167/339 (49%), Gaps = 40/339 (11%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL ++ SG+ V+D L L LQ LD C S L L GLS+L LS +
Sbjct: 19 SLQQLNCSGTSVSD--LSPLNGLRGLQQLD---CSLTSVSDLSPLSGLSDLQQLSC---S 70
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+ + + +GL L +LD C+ L L GL L+ L+ C+ + SD+ PL
Sbjct: 71 STSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLS---CSSTSVSDLFPL 124
Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLN 234
SGL+ L+ L S + V+D S ++ L GLQ+L C +T+ L LS L L L+
Sbjct: 125 SGLSGLQELSCSGTSVSDLSPLSGLNGLQQLD------CSLTSVSDLSPLSGLSGLQELS 178
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 294
+ +SD S L+ L+ L+ + D L L+GL L+ L S T V S L
Sbjct: 179 CSGTSVSD--LSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSV--SDLS 232
Query: 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
LSGL+ L+ ++ S T ++D L L+GLS L+ L ++D L+ L+ L+GL L
Sbjct: 233 PLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSVSD--LSPLSGLSGLQELS 288
Query: 355 LFGARITD----SGAAYLRNFKNLRSLEICGGGLTDAGV 389
++D SG + L+ L ++EI G+ AGV
Sbjct: 289 CSDTSVSDLFPLSGLSSLQELY-LYNVEI--PGIPTAGV 324
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 148/307 (48%), Gaps = 37/307 (12%)
Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKL 206
L L GL L+ L+ C+ + SD+ PLSGL+ L+ L S + V+D ++ L GLQ+L
Sbjct: 55 LSPLSGLSDLQQLS---CSSTSVSDLSPLSGLSGLQQLDCSSTSVSDLFPLSGLSGLQQL 111
Query: 207 TLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
+ C T+ L LS L L L+ + +SD S L L+ L+ +
Sbjct: 112 S------CSSTSVSDLFPLSGLSGLQELSCSGTSVSD--LSPLSGLNGLQQLDCSLTSVS 163
Query: 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSS 325
D L L+GL L+ L S T V S L LSGL+ L+ ++ S T +SD L L+GLS
Sbjct: 164 D--LSPLSGLSGLQELSCSGTSV--SDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSG 217
Query: 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385
L+ L ++D L+ L+ L+GL L G + D + L L+ L C
Sbjct: 218 LQQLYCSGTSVSD--LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQL-YC----- 267
Query: 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL------NVSNSRITSAGLR 439
V + DLS L+ L+ Q + +D ++ + L+GL SL NV I +AG+
Sbjct: 268 --SVTSVSDLSPLSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVL 325
Query: 440 HLKPLKN 446
+P N
Sbjct: 326 SQEPDDN 332
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 136/284 (47%), Gaps = 25/284 (8%)
Query: 64 LSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG 123
LS S + S L L S LQ LD C S L L GLS L LS ++ +
Sbjct: 67 LSCSSTSVSDLSPLSGLSGLQQLD---CSSTSVSDLFPLSGLSGLQQLSC---SSTSVSD 120
Query: 124 MKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+ +GL L +L C+ L L GL L+ L+ C+ + SD+ PLSGL+ L
Sbjct: 121 LFPLSGLSGLQELS---CSGTSVSDLSPLSGLNGLQQLD---CSLTSVSDLSPLSGLSGL 174
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
+ ++SCS + S ++ L GL L L+ G V+ L LS L L L + +SD
Sbjct: 175 Q--ELSCSGTSVSDLSPLSGLSGLQELSCSGTSVSD--LSPLSGLSGLQQLYCSGTSVSD 230
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
S L+ L+ L+ + D L L+GL L+ L S T V S L LSGL+ L
Sbjct: 231 --LSPLSGLSGLQQLSCSGTSVND--LSPLSGLSGLQQLYCSVTSV--SDLSPLSGLSGL 284
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ ++ S T +SD L L+GLSSL+ L L +I A + S
Sbjct: 285 QELSCSDTSVSD--LFPLSGLSSLQELYLYNVEIPGIPTAGVLS 326
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + SG+ V+D L L S LQ L C S L L GLS L L
Sbjct: 172 SGLQELSCSGTSVSD--LSPLSGLSGLQELS---CSGTSVSDLSPLSGLSGLQQLYC--- 223
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP 175
+ + + +GL L +L C+ G VN L L L L +C+ + SD+ P
Sbjct: 224 SGTSVSDLSPLSGLSGLQQLS---CS---GTSVNDLSPLSGLSGLQQLYCSVTSVSDLSP 277
Query: 176 LSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLE--GCPVTAA--------CLDSL 224
LSGL+ L+ L S + V+D ++ L LQ+L L N+E G P CLD L
Sbjct: 278 LSGLSGLQELSCSDTSVSDLFPLSGLSSLQELYLYNVEIPGIPTAGVLSQEPDDNCLDRL 337
Query: 225 SA 226
A
Sbjct: 338 RA 339
>gi|17227620|ref|NP_484168.1| hypothetical protein alr0124 [Nostoc sp. PCC 7120]
gi|17135102|dbj|BAB77648.1| leucine-rich-repeat protein [Nostoc sp. PCC 7120]
Length = 1119
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 156/336 (46%), Gaps = 42/336 (12%)
Query: 125 KAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+A A L NL +L L + T I L L L +L N+ + N IT+ + L+ LTNL
Sbjct: 120 EALAKLTNLTQLILSDNQITEIPEALAKLTNLTQL---NLSY-NQITEIP-EALAKLTNL 174
Query: 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
L +S +++T+ A L L LT LNL G T ++L+ L +L LNL+ Q ++
Sbjct: 175 TQLNLSYNQITEIPEA-LAKLTNLTQLNLRGNQRTEIP-EALAKLTNLTRLNLSYNQRTE 232
Query: 243 DGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
E ++LTNL L L I E + L NL L LS Q+ ++ LTNL
Sbjct: 233 I-PEALAKLTNLTQLILSDNQI-KEIPETIAKLTNLTHLILSGNQIKEIP-ETIAKLTNL 289
Query: 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362
+ L I + +A L++L L LD QI + A+T LT LTHL L G +I +
Sbjct: 290 TQLGLDGNQIKEIP-EAIAKLTNLTQLGLDGNQIKEIP-EAITKLTNLTHLILSGNQIKE 347
Query: 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422
I L++LT L LS N + E+++ LT
Sbjct: 348 IPET-------------------------IAKLTNLTQLALS--SNQITEIPEVLAQLTN 380
Query: 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L L +S+++IT L PL NL +L L ++T
Sbjct: 381 LTQLFLSSNQITQIP-EALAPLTNLTTLHLRVNQIT 415
>gi|345480032|ref|XP_003424075.1| PREDICTED: F-box/LRR-repeat protein 14-like [Nasonia vitripennis]
Length = 567
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 50/305 (16%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ L SL+ + C +SD G+ N+A++ + F+ +L +L
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGI----------------NSALS----QPFS---SLTQL 296
Query: 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKV 192
+L C I + + L LE+L++ C IT+S + ++ GL +L+ L + SC V
Sbjct: 297 NLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHV 356
Query: 193 TDSGIAYLKG----------LQKLTLLNLEGCPVTAACLDSLSALG---SLFYLNLNRC- 238
+D GI YL G L+ L L +++ +T L S+S LG SL +NL+ C
Sbjct: 357 SDQGIGYLAGINSDAGGNLALEHLGLQDVQR--LTDEGLRSIS-LGLATSLQSINLSFCV 413
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD-TQVGSSGLRHL 296
Q++D+G + +++T+L L+L +C I + + NL G + L++S +VG L+H+
Sbjct: 414 QITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSRISSLDVSFCDKVGDQALQHI 473
Query: 297 S-GLTNLESINLSFTGISDGSLRKLAGLSS-LKSLNL-DARQITDTG-LAALTSLTGLTH 352
S GL NL+S+ LS ISD + K+A L++L + ++TD L + S+ L
Sbjct: 474 SQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQCSRLTDKSILTIVESMPRLRS 533
Query: 353 LDLFG 357
+DL+G
Sbjct: 534 IDLYG 538
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 39/292 (13%)
Query: 57 SSLLSVDLSG-SDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSF 113
SSL ++LS +TD+ L + C NL++LD C I++ GL + GL +L L
Sbjct: 291 SSLTQLNLSYCKHITDASLGKIAQCLKNLETLDLGGCTNITNSGLHVIAWGLKSLRRLDV 350
Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
+ ++ QG+ AG+ + + G + LE L ++ +TD +
Sbjct: 351 KSCWHVSDQGIGYLAGINS-----------------DAGGNLALEHLGLQDVQRLTDEGL 393
Query: 174 KPLS-GL-TNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS- 229
+ +S GL T+L+S+ +S C ++TD+G+ ++ + L L+L C ++ + + +L+ GS
Sbjct: 394 RSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDISESAMANLAEGGSR 453
Query: 230 LFYLNLNRC-QLSDDGCEKFSR-LTNLESLNLDSCGIGDEGL-------VNLTGLCNLKC 280
+ L+++ C ++ D + S+ L NL+SL L +C I DEG+ +L L +C
Sbjct: 454 ISSLDVSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIAKTQQDLETLLIGQC 513
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 331
L+D + L + + L SI+L T IS SL K+ L L SLNL
Sbjct: 514 SRLTDKSI----LTIVESMPRLRSIDLYGCTKISKFSLEKILKL-PLISLNL 560
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 48/277 (17%)
Query: 200 LKGLQKLTLLNLEGC-PVTAACLDSL--SALGSLFYLNLNRCQ-LSDDGCEKFSR-LTNL 254
+G+ KL LNL GC ++ A ++S SL LNL+ C+ ++D K ++ L NL
Sbjct: 260 FRGIPKLHSLNLSGCFNMSDAGINSALSQPFSSLTQLNLSYCKHITDASLGKIAQCLKNL 319
Query: 255 ESLNLDSC-GIGDEGL-VNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN-------LES 304
E+L+L C I + GL V GL +L+ L++ V G+ +L+G+ + LE
Sbjct: 320 ETLDLGGCTNITNSGLHVIAWGLKSLRRLDVKSCWHVSDQGIGYLAGINSDAGGNLALEH 379
Query: 305 INLS-FTGISDGSLRKLA-GLS-SLKSLNLD-ARQITDTGLAALTSLTGLTHLDLFGARI 360
+ L ++D LR ++ GL+ SL+S+NL QITD G+ + +T L LDL I
Sbjct: 380 LGLQDVQRLTDEGLRSISLGLATSLQSINLSFCVQITDNGMKHIAKITSLRELDLRNCDI 439
Query: 361 TDSGAAYL---------------------------RNFKNLRSLEICGGGLTDAGVKHI- 392
++S A L + NL+SL + ++D G+ I
Sbjct: 440 SESAMANLAEGGSRISSLDVSFCDKVGDQALQHISQGLFNLKSLGLSACPISDEGIDKIA 499
Query: 393 KDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 428
K L L + Q LTDK+ L ++ + L S+++
Sbjct: 500 KTQQDLETLLIGQCSRLTDKSILTIVESMPRLRSIDL 536
>gi|434385223|ref|YP_007095834.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
gi|428016213|gb|AFY92307.1| Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus
PCC 6605]
Length = 362
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 144/297 (48%), Gaps = 58/297 (19%)
Query: 171 SDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
SD++P++ LTNL+ L + +TD + +A LK L L + + L L LGS
Sbjct: 98 SDLRPIASLTNLRKLSLYSHNITDLTPLANLKQLDALV--------INSNKLTDLKPLGS 149
Query: 230 LFYLNLNRCQLSD-DGCEKFSRLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQ 287
L LN + + ++LTNL+ L L I D + + NLT L + + DT+
Sbjct: 150 LNNLNDLGLLGRNIVNIKPIAKLTNLKKLTLWYSSIQDIKAVKNLTQLTEVSFI---DTK 206
Query: 288 VGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 346
+ S L +L LT LE N T I R L+GL++LK + L+ QI++ + L
Sbjct: 207 IADLSPLANLKSLTTLEVTNSKVTDI-----RALSGLTNLKRIVLNNNQISN--IQPLAR 259
Query: 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406
LT L L+L NF + +L G L+SLT +NLS N
Sbjct: 260 LTNLKSLNL--------------NFNRISNLTPLAG------------LTSLTGINLSDN 293
Query: 407 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463
+ D ++ I+ LT LV LN++N++IT ++KPL L+ LE+ V+ N +K
Sbjct: 294 -QIVD--IQPIAALTQLVGLNLNNNKIT-----NIKPLAKLQK--LETLVVSKNKVK 340
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 36/227 (15%)
Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-------- 194
R L NL+ L L S NI +D+ PL+ L L +L I+ +K+TD
Sbjct: 101 RPIASLTNLRKL-SLYSHNI--------TDLTPLANLKQLDALVINSNKLTDLKPLGSLN 151
Query: 195 ---------SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
I +K + KLT NL+ + + + + A+ +L L D
Sbjct: 152 NLNDLGLLGRNIVNIKPIAKLT--NLKKLTLWYSSIQDIKAVKNLT--QLTEVSFIDTKI 207
Query: 246 EKFSRLTNLESLN-LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 304
S L NL+SL L+ + L+GL NLK + L++ Q+ S ++ L+ LTNL+S
Sbjct: 208 ADLSPLANLKSLTTLEVTNSKVTDIRALSGLTNLKRIVLNNNQI--SNIQPLARLTNLKS 265
Query: 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGL 350
+NL+F IS+ L LAGL+SL +NL QI D +AALT L GL
Sbjct: 266 LNLNFNRISN--LTPLAGLTSLTGINLSDNQIVDIQPIAALTQLVGL 310
>gi|290992631|ref|XP_002678937.1| predicted protein [Naegleria gruberi]
gi|284092552|gb|EFC46193.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 7/192 (3%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281
+ +S L L YLN+ Q+ G + L L + N+ + I + L+ L L+ L
Sbjct: 8 EHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQLQTL 67
Query: 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG- 340
E+ + S+G+ +LS + + ++ I ++ L L L L++ Q+ G
Sbjct: 68 EIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGD 127
Query: 341 ------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394
+ LT + L +LD+ G I D GA L K L+ L + +++ G +HI
Sbjct: 128 DINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISK 187
Query: 395 LSSLTLLNLSQN 406
L LT LN++ N
Sbjct: 188 LEKLTFLNIANN 199
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 9/216 (4%)
Query: 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 299
L + G E S+L L LN+ + IG G L L L + + S +LS L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD----- 354
L+++ + + I + L+ + L + A +I G+ L +L LT+LD
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 355 --LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412
+ G I L + L+ L+I G + D G K + L L LN+ +N ++++
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNA-ISEE 180
Query: 413 TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448
+ IS L L LN++N+ I G+ +L +K L
Sbjct: 181 GAQHISKLEKLTFLNIANNDIGYQGI-YLSKMKQLH 215
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 8/196 (4%)
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 323
+G+ G +++ L L L + + Q+GS+G ++L L L + N+ I L+ L
Sbjct: 2 LGNIGAEHISKLKQLTYLNIQNNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSEL 61
Query: 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE----- 378
L++L + I G+ L+S+ +HL + I G +L N K L L+
Sbjct: 62 KQLQTLEIGYNNIESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQ 121
Query: 379 --ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436
I G + V+ + + L L++ N + D+ + +S L L LNV + I+
Sbjct: 122 VFIIGDDINSEEVEILTGMQQLQYLDIGGNY-IDDEGAKCLSKLKELKHLNVLRNAISEE 180
Query: 437 GLRHLKPLKNLRSLTL 452
G +H+ L+ L L +
Sbjct: 181 GAQHISKLEKLTFLNI 196
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 103/212 (48%), Gaps = 10/212 (4%)
Query: 98 GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157
G EH+ L LT L+ + NN I + G K L L ++ L L +L
Sbjct: 6 GAEHISKLKQLTYLNIQ-NNQIGSTGAKYLRELKQLTNPNIHTNDIDSKRAEYLSELKQL 64
Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE----- 212
++L I + N I + ++ LS + L ++ +++ G+ +L L++LT L++
Sbjct: 65 QTLEIGYNN-IESAGVEYLSSIEQFSHLGVAANEIVTEGVKWLGNLKQLTYLDISCNQVF 123
Query: 213 --GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
G + + ++ L+ + L YL++ + D+G + S+L L+ LN+ I +EG
Sbjct: 124 IIGDDINSEEVEILTGMQQLQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQ 183
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302
+++ L L L +++ +G G+ +LS + L
Sbjct: 184 HISKLEKLTFLNIANNDIGYQGI-YLSKMKQL 214
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI G ++LR L LT+ + N+ I ++ + + L L L++ G+ L
Sbjct: 25 QIGSTGAKYLRELKQLTNPNIHTND-IDSKRAEYLSELKQLQTLEIGYNNIESAGVEYLS 83
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG-------IAYLKGLQK 205
+ + L + N I +K L L L L ISC++V G + L G+Q+
Sbjct: 84 SIEQFSHLGVA-ANEIVTEGVKWLGNLKQLTYLDISCNQVFIIGDDINSEEVEILTGMQQ 142
Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265
L L++ G + LS L L +LN+ R +S++G + S+L L LN+ + IG
Sbjct: 143 LQYLDIGGNYIDDEGAKCLSKLKELKHLNVLRNAISEEGAQHISKLEKLTFLNIANNDIG 202
Query: 266 DEGL 269
+G+
Sbjct: 203 YQGI 206
>gi|4972088|emb|CAB43884.1| putative protein [Arabidopsis thaliana]
gi|7269233|emb|CAB81302.1| putative protein [Arabidopsis thaliana]
Length = 364
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 27/245 (11%)
Query: 232 YLNLNRCQLSDDGCEKFSRLT---NLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDT 286
YL++++ L + FS L NLE L+L S GD+ G V G NLK L +SDT
Sbjct: 46 YLDVSKTSLKN-----FSFLETMFNLEHLDLSSTAFGDDSVGFVACVG-ENLKNLNVSDT 99
Query: 287 QVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAAL 344
Q+ SG+ +L+G + LE++++S T + D S+ ++ + +K+L+L +
Sbjct: 100 QITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALDL-----------GM 148
Query: 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404
S G +L + + A L++ +L +L + L D + + L+ LT L+L+
Sbjct: 149 NSTLGFYYL-ISPQEEKEKSLAALQSLTSLETLSLEHPYLGDKALSGLSSLTGLTHLSLT 207
Query: 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK-VTANDIK 463
+ +LTD TL +S L LVSL V + +TS GL +P LR+L L+ C +T +DI
Sbjct: 208 -STSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTLDLQGCWLLTKDDIA 266
Query: 464 RLQSR 468
L R
Sbjct: 267 GLCKR 271
>gi|290979250|ref|XP_002672347.1| predicted protein [Naegleria gruberi]
gi|284085923|gb|EFC39603.1| predicted protein [Naegleria gruberi]
Length = 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 28/258 (10%)
Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256
+ +L+ ++KLT L+++ V + + +L L++ + +G + S+L NL S
Sbjct: 94 VRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLSILFNGIGPEGAKSISKLENLTS 153
Query: 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES------------ 304
L ++ +G EG +++ L L CL++S +G G +++ LT L
Sbjct: 154 LFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTKYIGKLTQLTQLIICNNEIYSER 213
Query: 305 ------------INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 352
+N+S+ I + L+ + L +L +D+ I G ++ +L LT+
Sbjct: 214 LKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLRIDSNNIGPEGAKSICTLQNLTN 273
Query: 353 LDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN-LT 410
L++ I D G + KNL+ L G+ D G + I ++ LT LN+S CN +
Sbjct: 274 LNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGAQSILSMTQLTNLNIS--CNKIG 331
Query: 411 DKTLELISGLTGLVSLNV 428
+ L+L G+ LV L +
Sbjct: 332 ENVLKLFGGMKQLVILEI 349
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 121/265 (45%), Gaps = 4/265 (1%)
Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+L + ++T+ N P A + L A+ L L+++ ++ +G + NL SL+
Sbjct: 76 FLDNIMEVTVEN----PGLIADVRFLQAVKKLTRLSIDYNRVGVEGASFIGEMKNLTSLS 131
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318
+ GIG EG +++ L NL L ++ Q+GS G + +S L L +++S + +
Sbjct: 132 ILFNGIGPEGAKSISKLENLTSLFINVNQLGSEGTKSISELKQLTCLDISGNHLGPEGTK 191
Query: 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
+ L+ L L + +I L + L LT L++ I GA YL K L +L
Sbjct: 192 YIGKLTQLTQLIICNNEIYSERLKFIGELRQLTILNVSYNYIDSEGAKYLSEMKQLTTLR 251
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 438
I + G K I L +LT LN+ N + L + + L LN S + I G
Sbjct: 252 IDSNNIGPEGAKSICTLQNLTNLNVDSNAIGDEGILSISEKMKNLKYLNASMNGIGDEGA 311
Query: 439 RHLKPLKNLRSLTLESCKVTANDIK 463
+ + + L +L + K+ N +K
Sbjct: 312 QSILSMTQLTNLNISCNKIGENVLK 336
>gi|392397216|ref|YP_006433817.1| hypothetical protein Fleli_1606 [Flexibacter litoralis DSM 6794]
gi|390528294|gb|AFM04024.1| hypothetical protein Fleli_1606 [Flexibacter litoralis DSM 6794]
Length = 492
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 176/413 (42%), Gaps = 91/413 (22%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
LKD L+ ++F++C LE L+ NL KL
Sbjct: 85 LKDLPFLEEVNFSYC---PVSSLEPLQNAKNLR-------------------------KL 116
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDS 195
D ER + + + KLE+L W C + + LS L NLK L +S + VTD
Sbjct: 117 DAERTL-----VSDFAPISKLETLEEIWVQKCAGINSVTSLSSLKNLKKLSLSATGVTD- 170
Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLE 255
+ LS++ SL L L ++ D K LTNLE
Sbjct: 171 -------------------------ISPLSSVSSLERLYLAYTKVKDISTLK--NLTNLE 203
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
++ + GI D L L NLK + T V S + LS L NLE + L++T + D
Sbjct: 204 KVSFTATGIKD--FSPLANLQNLKSILAWRTPV--SDISPLSKLVNLEQLYLNWTQVEDI 259
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
S + L +L+ + L +++D ++AL+++T LT + L +ITD A L N KNL
Sbjct: 260 S--PIKNLVNLRVIGLGHTKVSD--ISALSAMTQLTEVQLNNTKITDIEA--LTNAKNLE 313
Query: 376 SLEICGGGLTD----AGVKHIKD--LSSLTLLNLSQNCNLTDKTLEL-------ISGLTG 422
L I + G+ H+K L+ + N+S N T LEL I+ L G
Sbjct: 314 ILSISETEVEKIDVLEGLFHLKKVFLNKTQIKNISSLKNATK--LELLEVGETQINSLKG 371
Query: 423 LVSL-NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNL 473
+ +L N+ + + L+ LKPL L L C T IK L+ + PNL
Sbjct: 372 IENLINLKDLYVYQTQLKTLKPLSKLIKLEKLFCGETP--IKTLEGLENKPNL 422
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 32/306 (10%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
+L + LS + VTD + L S+L+ L + ++ D + L+ L+NL +SF
Sbjct: 157 NLKKLSLSATGVTD--ISPLSSVSSLERLYLAYT-KVKD--ISTLKNLTNLEKVSF---- 207
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
TA G+K F+ L NL L R + L L+ LE L + W D+ P+
Sbjct: 208 --TATGIKDFSPLANLQNLKSILAWRTPVSDISPLSKLVNLEQLYLNWTQV---EDISPI 262
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
L NL+ + + +KV+D I+ L + +LT + L +T + AL + NL
Sbjct: 263 KNLVNLRVIGLGHTKVSD--ISALSAMTQLTEVQLNNTKIT-----DIEALTNA--KNLE 313
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296
+S+ EK L L +L + + N++ L N LEL +VG + + L
Sbjct: 314 ILSISETEVEKIDVLEGL--FHLKKVFLNKTQIKNISSLKNATKLEL--LEVGETQINSL 369
Query: 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356
G+ NL INL + L+ L LS L + L+ +T + L L +L++
Sbjct: 370 KGIENL--INLKDLYVYQTQLKTLKPLSKL--IKLEKLFCGETPIKTLEGLENKPNLEIL 425
Query: 357 GARITD 362
A+ T+
Sbjct: 426 DAQKTE 431
>gi|386052609|ref|YP_005970167.1| internalin-I [Listeria monocytogenes Finland 1998]
gi|346645260|gb|AEO37885.1| internalin-I [Listeria monocytogenes Finland 1998]
Length = 1778
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 120/457 (26%), Positives = 190/457 (41%), Gaps = 111/457 (24%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD--------------------------------------------- 170
L+ LN+ + D
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 171 -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+++ L+ L LK+L I + S +A L G KL L++ C L LG
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKS-LATLNGATKLQLIDASNC-------TDLETLGD 339
Query: 230 LFYLN-LNRCQLSDDGCEKFSRLTNLESL-NL-----DSCGIGDEGLVNLTGLCNLKCLE 282
+ L+ L QLS GC K +T+L++L NL DSC I D G +N L L+ L
Sbjct: 340 ISGLSELEMIQLS--GCSKLKEITSLKNLPNLVNITADSCAIEDLGTLN--NLPKLQTLV 395
Query: 283 LSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
LSD + L +++ +T+L + L+ G S+ L L L+ L+L QIT +
Sbjct: 396 LSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITS--I 449
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ +T L L++LD+ +T G L+ L L + L+D V + + SL +
Sbjct: 450 SEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYI 505
Query: 402 NLSQNC-------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
N+S N N + + +I + L ++ SN+ IT+ G
Sbjct: 506 NISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGT--FD 563
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L L+SL + S ++T+ + DLP+L +F +
Sbjct: 564 NLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 43.9 bits (102), Expect = 0.20, Method: Composition-based stats.
Identities = 118/482 (24%), Positives = 196/482 (40%), Gaps = 114/482 (23%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ +T I LK L L LN+ ++ + +L+ SL Y+N++ + G K
Sbjct: 465 VNNLTT--IGDLKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINISNNVIRTVG--KM 518
Query: 249 SRLTNLESLNLDSCGIGDEGLVN--------------------LTGLCNLKCLELSDTQV 288
+ L +L+ + I D +++ L L+ L++ ++
Sbjct: 519 TELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRI 578
Query: 289 GSSGLRH--------------------LSGLTNLESINLSFTGI---------------- 312
S+ + H + L +L +NLSF I
Sbjct: 579 TSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLI 638
Query: 313 -SDG-----SLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITD 362
SD SL + G+ L+ L+L + TG L++L+ LT LT L+L D
Sbjct: 639 VSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVYID 698
Query: 363 --SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
SG + L + NL S I+D+S+L+ L Q L + +E IS
Sbjct: 699 DISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIENIS 745
Query: 419 GLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP ++S
Sbjct: 746 ALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTVLS 793
Query: 476 FR 477
++
Sbjct: 794 YQ 795
Score = 38.9 bits (89), Expect = 6.3, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 351 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 396
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 397 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+LT L NL N + K+L ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 450 LTLESCKVTANDIKRLQS-RDLPNLVS 475
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|254829631|ref|ZP_05234318.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N3-165]
gi|258602049|gb|EEW15374.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
N3-165]
Length = 1778
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 120/457 (26%), Positives = 190/457 (41%), Gaps = 111/457 (24%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---LM 155
+E L+ L NLTSL+ NN + L+NLV L+L + LVNL G L+
Sbjct: 175 IEGLQYLENLTSLNLSENN---ISDLAPLKDLVNLVSLNLSS----NRTLVNLSGVEDLV 227
Query: 156 KLESLNIKWCNCITD--------------------------------------------- 170
L+ LN+ + D
Sbjct: 228 NLQELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQEND 287
Query: 171 -SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
+++ L+ L LK+L I + S +A L G KL L++ C L LG
Sbjct: 288 LTNLTSLAKLPKLKNLYIKGNASLKS-LATLNGATKLQLIDASNC-------TDLETLGD 339
Query: 230 LFYLN-LNRCQLSDDGCEKFSRLTNLESL-NL-----DSCGIGDEGLVNLTGLCNLKCLE 282
+ L+ L QLS GC K +T+L++L NL DSC I D G +N L L+ L
Sbjct: 340 ISGLSELEMIQLS--GCSKLKEITSLKNLPNLVNITADSCAIEDLGTLN--NLPKLQTLV 395
Query: 283 LSDTQVGSSGLRHLSGLTNLESI-NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341
LSD + L +++ +T+L + L+ G S+ L L L+ L+L QIT +
Sbjct: 396 LSDNE----NLTNITAITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLDLKENQITS--I 449
Query: 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401
+ +T L L++LD+ +T G L+ L L + L+D V + + SL +
Sbjct: 450 SEITDLPRLSYLDVSVNNLTTIGD--LKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYI 505
Query: 402 NLSQNC-------------------NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442
N+S N N + + +I + L ++ SN+ IT+ G
Sbjct: 506 NISNNVIRTVGKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGT--FD 563
Query: 443 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 479
L L+SL + S ++T+ + DLP+L +F +
Sbjct: 564 NLPKLQSLDVHSNRITSTSV----IHDLPSLETFNAQ 596
Score = 43.9 bits (102), Expect = 0.20, Method: Composition-based stats.
Identities = 118/482 (24%), Positives = 196/482 (40%), Gaps = 114/482 (23%)
Query: 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNL---TSLSFRRNNAITAQGMKAFA 128
SG LK+ ++L++L I +E L L+NL +L N +T + A
Sbjct: 352 SGCSKLKEITSLKNLPNLVNITADSCAIEDLGTLNNLPKLQTLVLSDNENLT--NITAIT 409
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L L L L+ C G L L KLE L++K N IT + ++ L L L +S
Sbjct: 410 DLPQLKTLTLDGCGITSIG--TLDNLPKLEKLDLKE-NQITS--ISEITDLPRLSYLDVS 464
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ +T I LK L L LN+ ++ + +L+ SL Y+N++ + G K
Sbjct: 465 VNNLTT--IGDLKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINISNNVIRTVG--KM 518
Query: 249 SRLTNLESLNLDSCGIGDEGLVN--------------------LTGLCNLKCLELSDTQV 288
+ L +L+ + I D +++ L L+ L++ ++
Sbjct: 519 TELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRI 578
Query: 289 GSSGLRH--------------------LSGLTNLESINLSFTGI---------------- 312
S+ + H + L +L +NLSF I
Sbjct: 579 TSTSVIHDLPSLETFNAQTNLIANIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLI 638
Query: 313 -SDG-----SLRKLAGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITD 362
SD SL + G+ L+ L+L + TG L++L+ LT LT L+L D
Sbjct: 639 VSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSLSDLTNLTELNLRNNVYID 698
Query: 363 --SGAAYLRN--FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 418
SG + L + NL S I+D+S+L+ L Q L + +E IS
Sbjct: 699 DISGLSTLSRLIYLNLDS-------------NKIEDISALSNLTNLQELTLENNKIENIS 745
Query: 419 GLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475
L+ L +LN VS ++I + P+ N+ + VTA++ Q+ LP ++S
Sbjct: 746 ALSDLENLNKLVVSKNKIID-----ISPVANMVN---RGAIVTASN----QTYTLPTVLS 793
Query: 476 FR 477
++
Sbjct: 794 YQ 795
Score = 38.9 bits (89), Expect = 6.3, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S + L L NL S+NLS ISD L L L +L SLNL + + T L+ + L L
Sbjct: 173 SNIEGLQYLENLTSLNLSENNISD--LAPLKDLVNLVSLNLSSNR-TLVNLSGVEDLVNL 229
Query: 351 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 396
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 230 QELNVSANKALEDISQVASLPVLKEISAQGCNIKTLELKNPAGAVLPELETFYLQENDLT 289
Query: 397 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
+LT L NL N + K+L ++G T L ++ SN L + L L
Sbjct: 290 NLTSLAKLPKLKNLYIKGNASLKSLATLNGATKLQLIDASNCTDLET-LGDISGLSELEM 348
Query: 450 LTLESCKVTANDIKRLQS-RDLPNLVS 475
+ L C + +K + S ++LPNLV+
Sbjct: 349 IQLSGC----SKLKEITSLKNLPNLVN 371
>gi|357619268|gb|EHJ71912.1| hypothetical protein KGM_06037 [Danaus plexippus]
Length = 453
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 10/240 (4%)
Query: 9 QIFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG 66
Q+ EL + C +TE L A + L L + D+ + +A SL L
Sbjct: 192 QVLFELELTGCNEITEAGLWACLTPRIVSLTLTDCINIADEAVGAVAQLLPSLYEFSLQA 251
Query: 67 SDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQG 123
VTD+ L + K ++L L + C ++++ G+ ++ L NLT LS + +T +G
Sbjct: 252 YHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSLPNLTVLSLSGCSKVTDEG 311
Query: 124 MKAFA-GLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDMKPLSGLT 180
++ A L L LDL C R+ + L +LE L + C ITD + +S +
Sbjct: 312 VELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTLDRCVHITDIGVGYISTMQ 371
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRC 238
+L +L + CS+V D G+ +L G++ L LL+L GCP +T+ L SL L L L L C
Sbjct: 372 SLAALFLRWCSQVRDFGVQHLCGMRSLQLLSLAGCPLLTSGGLSSLIQLRQLRELELTNC 431
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 183/442 (41%), Gaps = 101/442 (22%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
V KW DV+ S S +GL+ + DC L+S + C+Q
Sbjct: 95 VCTKWRDVLYS------------SPRWWNGLVAVLDCRELRS-ETGCCMQ---------- 131
Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 163
R N++ +G++ F LI+ D+ + + ++ +K
Sbjct: 132 ----------RFYNSVVRRGIRGFV-LISATDDDINELIKQFP-----LSAHHIHAIGLK 175
Query: 164 WCNCITDSDMKP-LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--A 219
C ITD ++ L L L L+++ C+++T++G+ + ++ L L C A A
Sbjct: 176 GCT-ITDRGLESILDHLQVLFELELTGCNEITEAGL-WACLTPRIVSLTLTDCINIADEA 233
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFS--RLTNLESLNLDSCG-IGDEGLVNLT-GL 275
L SL+ +L ++D FS + +L L L SC + + G+VN+ L
Sbjct: 234 VGAVAQLLPSLYEFSLQAYHVTDAALGYFSPKQSASLSILRLHSCWELTNHGVVNIVHSL 293
Query: 276 CNLKCLELSD-TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLA-GLSSLKSLNL 331
NL L LS ++V G+ L+ L L S++LS+ ++D +L +A L+ L+ L L
Sbjct: 294 PNLTVLSLSGCSKVTDEGVELLAENLPRLRSLDLSWCPRVTDNALEYIACDLNQLEELTL 353
Query: 332 D-ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
D ITD G+ ++++ L A +LR +R D GV+
Sbjct: 354 DRCVHITDIGVGYISTMQSL-------------AALFLRWCSQVR----------DFGVQ 390
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
H+ + SL LL+L+ C L +TS GL L L+ LR L
Sbjct: 391 HLCGMRSLQLLSLA-GCPL-----------------------LTSGGLSSLIQLRQLREL 426
Query: 451 TLESCKVTANDIKRLQSRDLPN 472
L +C + ++ LP
Sbjct: 427 ELTNCPGASPELFDYLHEHLPR 448
>gi|149178243|ref|ZP_01856836.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
gi|148842892|gb|EDL57262.1| leucine-rich repeat domain protein [Planctomyces maris DSM 8797]
Length = 254
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%)
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363
+ +LS I+D +L+ LAGLS + SLNL ++T GLA L L LTHL L ++ D+
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423
G +L+ NL L + G +TDAG+ + L L L + Q L L +TGL
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD 243
+ +S K+TD + L GL K+ LNL G VT+A L L L +L +L+L + +++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 244 GCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGLRHLSGLTNL 302
G + +L NLE LNL I D GL L+ L LK L + T+V +GL +T L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 303 ESINLS 308
E I L
Sbjct: 178 EVIGLP 183
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 339
LSD ++ L+ L+GL+ ++S+NL T ++ L +L L +L L+L+ ++ D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 340 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSL 398
GL L L L +L+L+G ITD+G + L + K L+ L + +T AG+ + ++ L
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Query: 399 TLLNLSQNCN 408
++ L +
Sbjct: 178 EVIGLPEEPK 187
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 256 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315
+ +L I DE L L GL + L L T+V S+GL L L L ++L T ++D
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375
L+ L L +L+ LNL +ITD GL+ L+SL L L ++ ++T L+ +
Sbjct: 118 GLKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQE--QIT 175
Query: 376 SLEICG 381
LE+ G
Sbjct: 176 GLEVIG 181
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
+L+ +++D+ + + L+ ++SLNL + GL L L L L L T+V +G
Sbjct: 59 FHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAG 118
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-DTGLAALTSLTGL 350
L+HL L NLE +NL T I+D L +L+ L LK L + ++T GLA +TGL
Sbjct: 119 LKHLQQLPNLEYLNLYGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGL 177
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
ITD +K L+GL+ + SL + ++VT +G+A L+ L+ LT L+LE V A L L L
Sbjct: 66 ITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQL 125
Query: 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
+L YLNL +++D G + S L L+ L
Sbjct: 126 PNLEYLNLYGTEITDAGLSQLSSLKKLKRL 155
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387
+ +L ++ITD L L L+ + L+L G +T +G A L++ K L L + + DA
Sbjct: 58 AFHLSDQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDA 117
Query: 388 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447
G+KH++ L +L LNL + IT AGL L LK L
Sbjct: 118 GLKHLQQLPNLEYLNLY-------------------------GTEITDAGLSQLSSLKKL 152
Query: 448 RSLTLESCKVT 458
+ L + KVT
Sbjct: 153 KRLYVWQTKVT 163
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 42 PGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH 101
P +IA+ GS L +L+ +D HL D +I+D L+
Sbjct: 29 PATEQAKAKIIAAGGSVL---ELAQNDDRLEIAFHLSDQ------------KITDETLKT 73
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
L GLS + SL+ R +T+ G+ L L L LE+ GL +L+ L LE LN
Sbjct: 74 LAGLSKVDSLNLR-GTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLN 132
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVT-DSGIAYLKGLQKLTLLNL--EGCPVTA 218
+ + ITD+ + LS L LK L + +KVT +G+A + + L ++ L E PV A
Sbjct: 133 L-YGTEITDAGLSQLSSLKKLKRLYVWQTKVTRPAGLALQEQITGLEVIGLPEEPKPVAA 191
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 406 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465
+ +TD+TL+ ++GL+ + SLN+ + +TSAGL L+ LK L L LE KV +K L
Sbjct: 63 DQKITDETLKTLAGLSKVDSLNLRGTEVTSAGLAQLQHLKALTHLHLEKTKVNDAGLKHL 122
Query: 466 QSRDLPNL 473
Q LPNL
Sbjct: 123 QQ--LPNL 128
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 358 ARITDSGAAYLRNFKNLRSLEIC----GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 413
A+I +G + L +N LEI +TD +K + LS + LNL + +T
Sbjct: 36 AKIIAAGGSVLELAQNDDRLEIAFHLSDQKITDETLKTLAGLSKVDSLNL-RGTEVTSAG 94
Query: 414 LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L + L L L++ +++ AGL+HL+ L NL L L ++T
Sbjct: 95 LAQLQHLKALTHLHLEKTKVNDAGLKHLQQLPNLEYLNLYGTEIT 139
>gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa]
gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 188/412 (45%), Gaps = 57/412 (13%)
Query: 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDS------GLIHLKD----------------- 79
GV+D + +IA + + S+DLS +T+ L HL+D
Sbjct: 192 GVSDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAAL 251
Query: 80 ---CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
C ++++LD + C IS GL L G +L L+ + +T + L L
Sbjct: 252 KHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALANSLKRLSMLQS 311
Query: 136 LDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISC-SKV 192
+ L+ C GL + + L L++ C +TD + L + +LK L I+C K+
Sbjct: 312 VKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKI 371
Query: 193 TDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRCQLSDDGCEK 247
TD IAY+ LT L +E C + + ++ +G L L+L ++ D+G +
Sbjct: 372 TDVSIAYITNSCTNLTSLRMESCTLVPS--EAFVLIGQRCQFLEELDLTDNEIDDEGLKS 429
Query: 248 FSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVG-SSGLRHL------SGL 299
SR + L SL L C I DEGL ++ +KC +L++ + S+G+ L G
Sbjct: 430 ISRCSKLSSLKLGICLNISDEGLSHV----GMKCSKLTELDLYRSAGITDLGILAISRGC 485
Query: 300 TNLESINLSF-TGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAAL-TSLTGLTHLDLF 356
LE IN+S+ I+D SL L+ S L + + IT GLAA+ L LD+
Sbjct: 486 PGLEMINMSYCIDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIK 545
Query: 357 GAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL 403
I D+ L +F +NLR + + +TD G + I L S+T+L+L
Sbjct: 546 KCHNIGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLALASISCLQSMTVLHL 597
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 33/196 (16%)
Query: 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109
+I + L +DL+ +++ D GL + CS L SL C+ ISD GL H+ S LT
Sbjct: 404 LIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGLSHVGMKCSKLT 463
Query: 110 SLSFRRNNAITAQGMKAFA------GLINLVK-LDLE--------RCTRIHG-------- 146
L R+ IT G+ A + +IN+ +D+ +C+R++
Sbjct: 464 ELDLYRSAGITDLGILAISRGCPGLEMINMSYCIDITDSSLLSLSKCSRLNTFESRGCPL 523
Query: 147 ----GLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---I 197
GL + G +L L+IK C+ I D+ M PL+ + NL+ + +S S VTD G +
Sbjct: 524 ITSLGLAAIAVGCKQLIKLDIKKCHNIGDAAMLPLAHFSQNLRQITLSYSSVTDVGLLAL 583
Query: 198 AYLKGLQKLTLLNLEG 213
A + LQ +T+L+L+G
Sbjct: 584 ASISCLQSMTVLHLKG 599
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 114/421 (27%), Positives = 186/421 (44%), Gaps = 57/421 (13%)
Query: 42 PGVNDKWMDVIASQ-GSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFNFCIQISDGG 98
P +ND ++VI++ SL S+DLS S + +GL+ L +C NL S+D + ++ D
Sbjct: 87 PRINDNSLNVISNTCKDSLNSIDLSRSRFFSYNGLMSLASNCKNLVSIDLSNATELRDAA 146
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFA----------------------GLI----- 131
+ + NL L R IT G+ A GLI
Sbjct: 147 AAAVAEVKNLERLWLGRCKLITDMGIGCIAVGCKKLRLISLKWCIGVSDLGVGLIAVKCK 206
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SC 189
+ LDL + L ++ L LE + ++ C I D + L G ++K+L I SC
Sbjct: 207 EIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAALKHGCKSMKALDISSC 266
Query: 190 SKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
++ G++ L LQ+LTL CPVT A +SL L L + L+ C ++ G
Sbjct: 267 QHISHVGLSSLISGAGSLQQLTL--SYSCPVTLALANSLKRLSMLQSVKLDGCAVTSAGL 324
Query: 246 EKFSRL-TNLESLNLDSC-GIGDEGLVNL-TGLCNLK------CLELSDTQVGSSGLRHL 296
L L+L C G+ DEGL +L T +LK C +++D +
Sbjct: 325 TAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKITDVSIAYIT---- 380
Query: 297 SGLTNLESINLSFTGISDGSLRKLAG--LSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354
+ TNL S+ + + L G L+ L+L +I D GL +++ + L+ L
Sbjct: 381 NSCTNLTSLRMESCTLVPSEAFVLIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLK 440
Query: 355 L-FGARITDSGAAYL-RNFKNLRSLEIC-GGGLTDAGVKHI-KDLSSLTLLNLSQNCNLT 410
L I+D G +++ L L++ G+TD G+ I + L ++N+S ++T
Sbjct: 441 LGICLNISDEGLSHVGMKCSKLTELDLYRSAGITDLGILAISRGCPGLEMINMSYCIDIT 500
Query: 411 D 411
D
Sbjct: 501 D 501
>gi|18421172|ref|NP_568502.1| F-box protein [Arabidopsis thaliana]
gi|26449578|dbj|BAC41915.1| unknown protein [Arabidopsis thaliana]
gi|29028992|gb|AAO64875.1| At5g27920 [Arabidopsis thaliana]
gi|332006361|gb|AED93744.1| F-box protein [Arabidopsis thaliana]
Length = 642
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 216/427 (50%), Gaps = 38/427 (8%)
Query: 80 CSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
CSNL + +C++ISD G++ L +GL +L +S+ + IT +++ A L+ L
Sbjct: 171 CSNLNKISLKWCMEISDLGIDLLCKICKGLKSL-DVSYLK---ITNDSIRSIALLVKLEV 226
Query: 136 LDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS--CS 190
LD+ C I GGL L+ G L+ +++ C+ ++ S + + G +++ L+ S S
Sbjct: 227 LDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVS 286
Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPV-TAACLDSLSALGSLFYLNLNRC-QLSDDGCEKF 248
+V+ S + Y+KGL+ L + ++G V ++ + S+ SL + L+RC ++D G
Sbjct: 287 EVSGSFLKYIKGLKHLKTIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISL 346
Query: 249 SR-LTNLESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQ-VGSSGLRHLSGLTNL-E 303
+R NL++LNL CG + D + + C NL L+L + GL+ L + L +
Sbjct: 347 ARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQ 406
Query: 304 SINLS-FTGISDGSLRKLAGLSSLKSLNLD-ARQITDTGLAALTS-LTGLTHLDLFG-AR 359
++L+ G++D L ++ S+L+ L L I+D G+ + S + L LDL+ A
Sbjct: 407 ELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAG 466
Query: 360 ITDSGAAYL-RNFKNLRS--LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 416
D G A L R K+L L C LTD GV+ I+ L L+ L L N+T L
Sbjct: 467 FGDDGLAALSRGCKSLNRLILSYC-CELTDTGVEQIRQLELLSHLELRGLKNITGVGLAA 525
Query: 417 I-SGLTGLVSLNVS-NSRITSAGLRHLKPL-KNLRSLTLESCKVT-------ANDIKRLQ 466
I SG L L+V I +G L KNLR + L +C V+ +++ R+Q
Sbjct: 526 IASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTALCMLMSNLSRVQ 585
Query: 467 SRDLPNL 473
DL +L
Sbjct: 586 DVDLVHL 592
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 177/391 (45%), Gaps = 46/391 (11%)
Query: 44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR 103
++D +D++ L S+D+S +T+ + + L+ LD C I DGGL+ L
Sbjct: 185 ISDLGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQFLE 244
Query: 104 -GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERC-TRIHGGLVN-LKGLMKLES 159
G +L + R + ++ G+ + G ++ L C + + G + +KGL L++
Sbjct: 245 NGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLKT 304
Query: 160 LNI-------------------------KWCNCITDSDMKPLS-GLTNLKSLQISCSK-V 192
+ I C +TD M L+ NLK+L ++C V
Sbjct: 305 IWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFV 364
Query: 193 TDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFY-LNLNRCQ-LSDDGCEKF 248
TD I A + + L L LE C +T L SL L L+L C ++D G E
Sbjct: 365 TDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEYI 424
Query: 249 SRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ---VGSSGLRHLS-GLTNLE 303
S+ +NL+ L L C I D+G+ ++ C+ K LEL + G GL LS G +L
Sbjct: 425 SKCSNLQRLKLGLCTNISDKGIFHIGSKCS-KLLELDLYRCAGFGDDGLAALSRGCKSLN 483
Query: 304 SINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTS-LTGLTHLDL-FGAR 359
+ LS+ ++D + ++ L L L L + IT GLAA+ S L +LD+
Sbjct: 484 RLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCEN 543
Query: 360 ITDSGAAYLRNF-KNLRSLEICGGGLTDAGV 389
I DSG L F KNLR + +C ++D +
Sbjct: 544 IDDSGFWALAYFSKNLRQINLCNCSVSDTAL 574
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 25 LEAFRDCA-LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSGLIHL-KDCS 81
LE C+ LQ L LG ++DK + I S+ S LL +DL + D GL L + C
Sbjct: 421 LEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCK 480
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLER 140
+L L ++C +++D G+E +R L L+ L R IT G+ A A G L LD++
Sbjct: 481 SLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKL 540
Query: 141 CTRI-HGGLVNLKGLMK-LESLNIKWCNC-ITDSDMKPLSGLTNLKSLQ----ISCSKVT 193
C I G L K L +N+ CNC ++D+ + L ++NL +Q + S+VT
Sbjct: 541 CENIDDSGFWALAYFSKNLRQINL--CNCSVSDTALCML--MSNLSRVQDVDLVHLSRVT 596
Query: 194 DSGIAY 199
G +
Sbjct: 597 VEGFEF 602
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF 127
V D GL ++ CSNLQ L C ISD G+ H+ S L L R G+ A
Sbjct: 416 VNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAAL 475
Query: 128 A-GLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKS 184
+ G +L +L L C + G+ ++ L L L ++ IT + + SG L
Sbjct: 476 SRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGY 535
Query: 185 LQIS-CSKVTDSGIAYLKGLQK-LTLLNLEGCPV--TAACL 221
L + C + DSG L K L +NL C V TA C+
Sbjct: 536 LDVKLCENIDDSGFWALAYFSKNLRQINLCNCSVSDTALCM 576
>gi|395818901|ref|XP_003782849.1| PREDICTED: F-box/LRR-repeat protein 13 [Otolemur garnettii]
Length = 784
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 190/423 (44%), Gaps = 78/423 (18%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
LQ+L + + D+ M I+ +L ++LS +++T+ + L + NLQ+L +C
Sbjct: 293 LQELNVSDCSTLTDESMRQISEGCPGVLYLNLSNTNITNRTMRLLPRYFHNLQNLSLAYC 352
Query: 92 IQISDGGLEHL---RGLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
+ +D GL++L G L L I+ QG K A G+++L
Sbjct: 353 RKFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFKNIASSCSGIMHLTINDMPTLTDN 412
Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
VK +E+C RI H K L L + + ITD+ K +
Sbjct: 413 CVKALVEKCLRITSVIFIGAPHISDSTFKALSICSLRKIRFEGNKRITDTCFKLMDKNYP 472
Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-----ACLDSLSALGSLFYLN 234
N+ + ++ C +TDS + L L++LT+LNL C LD +++ S+ LN
Sbjct: 473 NISHIYMADCKGITDSSLKPLSHLRRLTVLNLANCMRIGDIGIKHFLDGPASI-SIRELN 531
Query: 235 LNRC-QLSDDGCEKFS-RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 292
L+ C QL+D K S R NL L+L +C +G G
Sbjct: 532 LSNCVQLTDFSAMKLSDRCYNLNYLSLRNCEHLTDG-----------------------G 568
Query: 293 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT-GL 350
L ++ + +L S++LS T ISD L L+ LK L+L + +ITD G+ A + L
Sbjct: 569 LEYIVNILSLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKITDIGIQAFCRFSLTL 628
Query: 351 THLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDAGVK---------HIKDLSSL 398
+LD+ + +R++D L + ++ SL I G +TD+G++ HI D+S
Sbjct: 629 EYLDVSYCSRLSDGIIKALAIYCTDITSLIIAGCPKITDSGIEMLSAKCHYVHILDVSGC 688
Query: 399 TLL 401
LL
Sbjct: 689 VLL 691
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 180/420 (42%), Gaps = 73/420 (17%)
Query: 87 DFNFCIQISDGGLEHLRGLSNLTSLSFRR-NNAITAQGMKAF--AGLINLVKLDLERCTR 143
D C QIS L + S ++ F N IT + + + +N+++L+ C
Sbjct: 220 DTVVCSQISHAWLSMTQMSSLWNAIDFSAVKNIITEKYVVSTLQKWRLNVLRLNFRGCLF 279
Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG------------------------- 178
++ L+ LN+ C+ +TD M+ +S
Sbjct: 280 RPKTFKSVSACKNLQELNVSDCSTLTDESMRQISEGCPGVLYLNLSNTNITNRTMRLLPR 339
Query: 179 -LTNLKSLQIS-CSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDSLSALGS---- 229
NL++L ++ C K TD G+ YL G KL L+L GC T + + S
Sbjct: 340 YFHNLQNLSLAYCRKFTDKGLQYLNLGNGCHKLIYLDLSGC--TQISVQGFKNIASSCSG 397
Query: 230 LFYLNLNRCQLSDDGC-----EKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+ +L +N D C EK R+T++ + + + I D L+ +C+L+ +
Sbjct: 398 IMHLTINDMPTLTDNCVKALVEKCLRITSV--IFIGAPHISDSTFKALS-ICSLRKIRFE 454
Query: 285 -DTQVGSSGLRHL-SGLTNLESINLS-FTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 340
+ ++ + + + N+ I ++ GI+D SL+ L+ L L LNL + +I D G
Sbjct: 455 GNKRITDTCFKLMDKNYPNISHIYMADCKGITDSSLKPLSHLRRLTVLNLANCMRIGDIG 514
Query: 341 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 400
+ L G + + + S L +F ++ + C +L+ L+L
Sbjct: 515 IKHF--LDGPASISI--RELNLSNCVQLTDFSAMKLSDRC------------YNLNYLSL 558
Query: 401 LNLSQNC-NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC-KVT 458
+NC +LTD LE I + LVS+++S ++I+ GL L K L+ L+L C K+T
Sbjct: 559 ----RNCEHLTDGGLEYIVNILSLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKIT 614
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 50/299 (16%)
Query: 20 LTEVSLEAFRDCALQDLCLGQYPGVND---KWMDVIASQGSSLLSVDLSGSDVTDSGLIH 76
+++ + +A C+L+ + + D K MD S + D G +TDS L
Sbjct: 435 ISDSTFKALSICSLRKIRFEGNKRITDTCFKLMDKNYPNISHIYMADCKG--ITDSSLKP 492
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
L L L+ C++I D G++H L S+S R N + F+ + KL
Sbjct: 493 LSHLRRLTVLNLANCMRIGDIGIKHF--LDGPASISIRELNLSNCVQLTDFSAM----KL 546
Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
+RC L L+++ C +TD ++ + + +L S+ +S +K++D G
Sbjct: 547 S-DRC-------------YNLNYLSLRNCEHLTDGGLEYIVNILSLVSVDLSGTKISDEG 592
Query: 197 IAYLKGLQKLTLLNLEGCP------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSR 250
+ L +KL L+L C + A C SL +L YL+++ C DG K
Sbjct: 593 LLILSKHKKLKELSLSECYKITDIGIQAFCRFSL----TLEYLDVSYCSRLSDGIIKALA 648
Query: 251 L--TNLESLNLDSCG-IGDEGLVNLTGLCNLK-------CLELSDT-----QVGSSGLR 294
+ T++ SL + C I D G+ L+ C+ C+ L+D Q+G LR
Sbjct: 649 IYCTDITSLIIAGCPKITDSGIEMLSAKCHYVHILDVSGCVLLTDQMLQSLQIGCKQLR 707
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
SL+SVDLSG+ ++D GL+ L L+ L + C +I+D G++ S
Sbjct: 577 SLVSVDLSGTKISDEGLLILSKHKKLKELSLSECYKITDIGIQAFCRFS----------- 625
Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM--KLESLNIKWCNCITDSDMKP 175
+ L LD+ C+R+ G++ + + SL I C ITDS ++
Sbjct: 626 -------------LTLEYLDVSYCSRLSDGIIKALAIYCTDITSLIIAGCPKITDSGIEM 672
Query: 176 LSGLTN-LKSLQIS-CSKVTDSGIAYLK-GLQKLTLLNLEGC 214
LS + + L +S C +TD + L+ G ++L +L ++ C
Sbjct: 673 LSAKCHYVHILDVSGCVLLTDQMLQSLQIGCKQLRILKMQYC 714
>gi|406832962|ref|ZP_11092556.1| hypothetical protein SpalD1_15024 [Schlesneria paludicola DSM
18645]
Length = 236
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355
+ GL L S++L T I D L+++A L +L +L L ITD GL L S L+ LDL
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415
G RITD G L +LR L++ +T G+K + L +L LNL +N + D LE
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNL-ENTKVNDTGLE 186
Query: 416 LISGLTGLVSLNVSNSRITSAG 437
+ L+ +N+ + +T AG
Sbjct: 187 CVHEFKHLIRINLRRTSVTDAG 208
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 133 LVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
+V + +R +G ++L KGL +L SL+++ + I D+ +K ++ L NL +L++S
Sbjct: 49 VVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTD-IGDTHLKEIAELENLTTLRLSNVP 107
Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
+TD+G+ L+ +KL+ L+L G +T L LS SL YL+L+ ++ G + S L
Sbjct: 108 ITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGL 167
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 297
NL SLNL++ + D GL + +L + L T V +G + S
Sbjct: 168 PNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFS 213
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 211 LEGCPVTAAC-----------LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
L G PV + L + L L L+L + + D ++ + L NL +L L
Sbjct: 44 LPGTPVVSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRL 103
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
+ I D GL+ L L L+L+ T++ GL+ LS +L ++LS T I+ L+
Sbjct: 104 SNVPITDAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKD 163
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE 378
L+GL +L SLNL+ ++ DTGL + L ++L +TD+G A+ + N R +
Sbjct: 164 LSGLPNLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVTDAGQKAFSVSMPNTRIYD 223
Query: 379 ICGGGLTDAGV 389
G + G+
Sbjct: 224 SGSGPAFNVGM 234
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 305 INLSFTGIS--DGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361
+++SF G S +G L GL L SL+L I DT L + L LT L L IT
Sbjct: 50 VSVSFYGSSRFNGKFLHLVKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPIT 109
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421
D+G LR+ K L +L++ G +TD G+K + SL L+LS+ +T L+ +SGL
Sbjct: 110 DAGLIELRSQKKLSTLDLAGTRITDDGLKELSVHHSLRYLDLSETT-ITGMGLKDLSGLP 168
Query: 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458
L+SLN+ N+++ GL + K+L + L VT
Sbjct: 169 NLLSLNLENTKVNDTGLECVHEFKHLIRINLRRTSVT 205
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+KGL +LT L+L + L ++ L +L L L+ ++D G + L +L+L
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319
I D+GL L+ +L+ L+LS+T + GL+ LSGL NL S+NL T ++D L
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLEC 187
Query: 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 366
+ L +NL +TD G A + + + RI DSG+
Sbjct: 188 VHEFKHLIRINLRRTSVTDAGQKAFS-------VSMPNTRIYDSGSG 227
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 73/140 (52%)
Query: 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310
L L SL+L IGD L + L NL L LS+ + +GL L L +++L+ T
Sbjct: 71 LDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDLAGT 130
Query: 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370
I+D L++L+ SL+ L+L IT GL L+ L L L+L ++ D+G +
Sbjct: 131 RITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLECVHE 190
Query: 371 FKNLRSLEICGGGLTDAGVK 390
FK+L + + +TDAG K
Sbjct: 191 FKHLIRINLRRTSVTDAGQK 210
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 272 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+ GL L L+L T +G + L+ ++ L NL ++ LS I+D L +L L +L+L
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLSNVPITDAGLIELRSQKKLSTLDL 127
Query: 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391
+ITD GL L+ L +LDL IT G L NL SL + + D G++
Sbjct: 128 AGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTKVNDTGLEC 187
Query: 392 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 437
+ + L +NL + ++TD +G S+++ N+RI +G
Sbjct: 188 VHEFKHLIRINL-RRTSVTD------AGQKAF-SVSMPNTRIYDSG 225
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L S+DL +D+ D+ L + + NL +L + + I+D GL LR L++L
Sbjct: 74 LTSLDLRKTDIGDTHLKEIAELENLTTLRLS-NVPITDAGLIELRSQKKLSTLDLA-GTR 131
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
IT G+K + +L LDL T GL +L GL L SLN++ + D+ ++ +
Sbjct: 132 ITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSGLPNLLSLNLENTK-VNDTGLECVHE 190
Query: 179 LTNLKSLQISCSKVTDSG 196
+L + + + VTD+G
Sbjct: 191 FKHLIRINLRRTSVTDAG 208
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
++ L SL++ + D +K I +L +LT L LS N +TD L + L +L+
Sbjct: 68 VKGLDQLTSLDLRKTDIGDTHLKEIAELENLTTLRLS-NVPITDAGLIELRSQKKLSTLD 126
Query: 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
++ +RIT GL+ L +LR L L +T +K L LPNL+S
Sbjct: 127 LAGTRITDDGLKELSVHHSLRYLDLSETTITGMGLKDLSG--LPNLLSL 173
>gi|343414400|emb|CCD21001.1| leucine-rich repeat protein [Trypanosoma vivax Y486]
Length = 511
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 126/382 (32%), Positives = 173/382 (45%), Gaps = 43/382 (11%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
LD + C I+D + L L L L IT + + LI L KL+L CT I
Sbjct: 2 LDLSHCTGITD--VSPLTTLIELKELDLNDCTGIT--DVSPLSTLIRLEKLNLSDCTGIT 57
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQ 204
+ L L++LE LN+ C IT D+ PL+ L LK L ++ C+++TD ++ L L
Sbjct: 58 D-VSPLSTLIRLEKLNLSGCTGIT--DVSPLTTLIELKELDLNDCTRITD--VSPLSTLI 112
Query: 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC-G 263
+L L L GC + L+ L L L L+ C D + L L+ L L C G
Sbjct: 113 RLEKLCLSGC-TGITDVSPLTTLIELKELCLSGCTGITD-VSPLTTLIELKELGLSGCTG 170
Query: 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF----TGISDGSLRK 319
I D + LT L LK L LS G +G+ +S LT L + + + TGI+D S
Sbjct: 171 ITD--VSPLTTLIELKELGLS----GCTGITDVSPLTTLIRLKVLYLIGCTGITDVS--P 222
Query: 320 LAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378
L L LK L+L D ITD ++ LT+L L L L G +G + L LE
Sbjct: 223 LTTLIELKELDLHDCTGITD--VSPLTTLIELKELGLSGC----TGITDVSPLTTLIRLE 276
Query: 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLN----VSNSRI 433
+ L G I D+S LT L + +L D T + +S LT L+ L +RI
Sbjct: 277 V----LYLIGCTGITDVSPLTTLIELKELDLHDCTGITDVSPLTTLIELKELALYGCTRI 332
Query: 434 TSAGLRHLKPLKNLRSLTLESC 455
T L L L L L C
Sbjct: 333 TDV--SPLSALIRLEKLCLSGC 352
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 106/238 (44%), Gaps = 17/238 (7%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
L+ L C I+D + L L L L IT + LI L +L L C
Sbjct: 274 RLEVLYLIGCTGITD--VSPLTTLIELKELDLHDCTGIT--DVSPLTTLIELKELALYGC 329
Query: 142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-ISCSKVTDSGIAYL 200
TRI + L L++LE L + C IT D+ PL+ L L+ L I C+ +TD ++ L
Sbjct: 330 TRITD-VSPLSALIRLEKLCLSGCTGIT--DVSPLTTLIRLEVLYLIGCTGITD--VSPL 384
Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
L +L L L GC + L+ L L L L+ C D + L LE L L
Sbjct: 385 TTLIELKELGLSGC-TGITDVSPLTTLIELKELGLSGCTGITD-VSPLTTLIRLEVLYLI 442
Query: 261 SC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGS 316
C GI D + LT L LK L+L D G S + L + E + + TGISD S
Sbjct: 443 GCTGITD--VSPLTTLIELKELDLHDCT-GISDVSPLPMMIRPEVLYMIGCTGISDVS 497
>gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera]
gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 167/358 (46%), Gaps = 26/358 (7%)
Query: 69 VTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKA 126
+ D L+ LK C +L+ LD + C +S GL L +L L+ + +T +
Sbjct: 239 IDDDSLVALKHGCKSLKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAYGSPVTHALADS 298
Query: 127 FAGLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKS 184
L L + L+ C + GL + L +++ C +TD + L +L+
Sbjct: 299 LQDLSMLQSIKLDGCAVTYAGLKGIGNSCALLREVSLSKCLGVTDEGLSSLVMKHRDLRK 358
Query: 185 LQISC-SKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLNLNRC 238
L ++C K+T IAY+ LT L +E C + + ++ +G L L+L
Sbjct: 359 LDVTCCRKITQVSIAYITNSCPALTSLKMESCTLVPS--EAFVLIGQRCLCLEELDLTDN 416
Query: 239 QLSDDGCEKFSRLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQ---VGSSGLR 294
++ D+G + SR L SL L C I DEGL ++ G+C K +EL + + SG+
Sbjct: 417 EIDDEGLKSISRCFKLTSLKLGICLNITDEGLGHV-GMCCSKLIELDLYRCVGITDSGIL 475
Query: 295 HLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSL-NLDARQITDTGLAAL-TSLTGL 350
++ G LE IN+++ I+D SL L+ L + + IT GLAA+ L
Sbjct: 476 AIAHGCPGLEMINVAYCKDITDSSLISLSKCPRLNTFESRGCPSITSLGLAAIAVGCKQL 535
Query: 351 THLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNL 403
LD+ I D+G L +F +NLR + + +TD G + I L S+T+L+L
Sbjct: 536 AKLDIKKCHNINDAGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQSMTILHL 593
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNN 117
L +DL+ +++ D GL + C L SL C+ I+D GL H+ S L L R
Sbjct: 408 LEELDLTDNEIDDEGLKSISRCFKLTSLKLGICLNITDEGLGHVGMCCSKLIELDLYRCV 467
Query: 118 AITAQGMKAFAG------LINLVK---------LDLERCTRIHG------------GLVN 150
IT G+ A A +IN+ + L +C R++ GL
Sbjct: 468 GITDSGILAIAHGCPGLEMINVAYCKDITDSSLISLSKCPRLNTFESRGCPSITSLGLAA 527
Query: 151 LK-GLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSG---IAYLKGLQK 205
+ G +L L+IK C+ I D+ M PL+ + NL+ + +S S VTD G +A + LQ
Sbjct: 528 IAVGCKQLAKLDIKKCHNINDAGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQS 587
Query: 206 LTLLNLEG 213
+T+L+L+G
Sbjct: 588 MTILHLKG 595
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 134/520 (25%), Positives = 214/520 (41%), Gaps = 103/520 (19%)
Query: 33 LQDLCLGQYPGVNDKWMDVIASQ-GSSLLSVDLSGSDV-TDSGLIHLK-DCSNLQSLDFN 89
L+ L L P + D + +I+ S+L S+DLS S + GL +L +CS L +D +
Sbjct: 74 LEHLDLSLCPRITDNSLTIISVLCKSTLRSIDLSQSRFFSHVGLWNLATNCSGLVEIDLS 133
Query: 90 FCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG-- 146
++ D G + NL L R IT G+ A G L + L+ C +
Sbjct: 134 NATELRDAGAAAIAEAKNLERLWLARCKLITDMGIGCIAVGCKKLRSISLKWCLGVGDLG 193
Query: 147 -GLVNLK-----------------------GLMKLESLNIKWCNCITDSDMKPLS-GLTN 181
GL+ +K L LE L + C I D + L G +
Sbjct: 194 VGLIAVKCKQIRHLDLSYLPITNKCLPCILQLQYLEDLILVGCFSIDDDSLVALKHGCKS 253
Query: 182 LKSLQI-SCSKVTDSGIAYL----KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
LK L + SC V+ G++ L + LQ+L L G PVT A DSL L L + L+
Sbjct: 254 LKKLDMSSCQNVSHVGLSSLTSDARSLQQLALAY--GSPVTHALADSLQDLSMLQSIKLD 311
Query: 237 RCQ--------------------------LSDDG------------------CEKFSR-- 250
C ++D+G C K ++
Sbjct: 312 GCAVTYAGLKGIGNSCALLREVSLSKCLGVTDEGLSSLVMKHRDLRKLDVTCCRKITQVS 371
Query: 251 ---LTN----LESLNLDSCG-IGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTN 301
+TN L SL ++SC + E V + C L+ L+L+D ++ GL+ +S
Sbjct: 372 IAYITNSCPALTSLKMESCTLVPSEAFVLIGQRCLCLEELDLTDNEIDDEGLKSISRCFK 431
Query: 302 LESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQ---ITDTGLAALTS-LTGLTHLDL- 355
L S+ L I+D L + G+ K + LD + ITD+G+ A+ GL +++
Sbjct: 432 LTSLKLGICLNITDEGLGHV-GMCCSKLIELDLYRCVGITDSGILAIAHGCPGLEMINVA 490
Query: 356 FGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK-DLSSLTLLNLSQNCNLTDKT 413
+ ITDS L L + E G +T G+ I L L++ + N+ D
Sbjct: 491 YCKDITDSSLISLSKCPRLNTFESRGCPSITSLGLAAIAVGCKQLAKLDIKKCHNINDAG 550
Query: 414 LELISGLT-GLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452
+ ++ + L +N+S S +T GL L + L+S+T+
Sbjct: 551 MIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQSMTI 590
>gi|154330999|ref|XP_001561939.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059261|emb|CAM36960.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 535
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 23/307 (7%)
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
G+ + + L L C R+H + L G C+ PL+ LT+L L +S
Sbjct: 221 GVTSDIVLALSSCHRVHT--LTLSG-------------CVGIDCFAPLTALTHLSRLDVS 265
Query: 189 CSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
+ + ++ + +L + +L L L C L+ L +L YL++ R + E+
Sbjct: 266 HTHLDNAELLHLCRSCSQLRFLALNSCNHITD-FSPLALLENLTYLHVARTRFRTSDLER 324
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L LE +++ SC + D L L L+ L+L DT + +G+ ++ L+ +NL
Sbjct: 325 IKALPELEEVHMSSCRVVD-TFTPLADLRTLRVLDLRDTWMDDAGIEAIARCCQLKRLNL 383
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITDSGAA 366
S + + LA LS L LNL +TDT LA L + L + L G R+ S
Sbjct: 384 S-SCPAIEHFSPLAQLSMLDELNLSCSPVTDTCLAMLCAFALSLRVILLHGCRLV-SDFT 441
Query: 367 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426
LR +L + +C D ++ + L L+L +T +L ++ LV L
Sbjct: 442 PLRKLSSLEEVGVCDTAFNDDALEAVAQCPQLAKLHLHVCTGVT--SLSPLAACAHLVYL 499
Query: 427 NVSNSRI 433
+ +R
Sbjct: 500 GIGGTRF 506
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 62 VDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
+D+S + + ++ L+HL + CS L+ L N C I+D L L NLT L R T
Sbjct: 262 LDVSHTHLDNAELLHLCRSCSQLRFLALNSCNHITD--FSPLALLENLTYLHVARTRFRT 319
Query: 121 A--QGMKAF--------------------AGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+ + +KA A L L LDL G+ + +L+
Sbjct: 320 SDLERIKALPELEEVHMSSCRVVDTFTPLADLRTLRVLDLRDTWMDDAGIEAIARCCQLK 379
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLLNLEGCPVT 217
LN+ C I PL+ L+ L L +SCS VTD+ +A L L ++ L GC +
Sbjct: 380 RLNLSSCPAI--EHFSPLAQLSMLDELNLSCSPVTDTCLAMLCAFALSLRVILLHGCRLV 437
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262
+ L L SL + + +DD E ++ L L+L C
Sbjct: 438 SD-FTPLRKLSSLEEVGVCDTAFNDDALEAVAQCPQLAKLHLHVC 481
>gi|254992878|ref|ZP_05275068.1| internalin proteins, peptidoglycan bound protein (LPXTG motif)
[Listeria monocytogenes FSL J2-064]
Length = 1775
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 116/452 (25%), Positives = 188/452 (41%), Gaps = 107/452 (23%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L R L ++GL+ L+
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS-NRTLVNLSGVEGLVNLQ 227
Query: 159 SLNIKWCNCITD----------------------------------------------SD 172
LN+ + D +D
Sbjct: 228 ELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLTD 287
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L+ L LK+L I + S +A LKG KL L++ C L LG +
Sbjct: 288 LTSLAKLPKLKNLYIKGNASLKS-LATLKGATKLQLIDASNC-------TDLETLGDISG 339
Query: 233 LN-LNRCQLSDDGCEKFSRLT------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L+ L QLS GC K +T NL ++ DSC I D G +N L L+ L LSD
Sbjct: 340 LSELEMIQLS--GCSKLKEITSLKDLPNLVNITADSCAIEDLGTLN--NLPKLQTLILSD 395
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ + + ++ + L+++ L GI+ S+ L L L+ L+L Q+T ++ +
Sbjct: 396 NK-DLTNINAITDMPQLKTLALDGCGIT--SIGTLDNLPKLEKLDLKENQLTS--ISEIN 450
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS- 404
L L++LD+ +T G L+ L L + L+D V + + SL +N+S
Sbjct: 451 DLPRLSYLDVSVNYLTTIGE--LKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVSN 506
Query: 405 --------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
QN N++D + +I + L ++ SN+ IT+ G L
Sbjct: 507 NVIRTVGKMTELPSLKEFYAQNNNISD--ISMIHDMPNLRKVDASNNLITNIGT--FDNL 562
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
L++L + S ++T + DLP+L +F
Sbjct: 563 PKLQNLDVHSNRITNTSV----IHDLPSLETF 590
Score = 44.7 bits (104), Expect = 0.10, Method: Composition-based stats.
Identities = 119/490 (24%), Positives = 198/490 (40%), Gaps = 107/490 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN--------------------LTGLC 276
+ G K + L +L+ + I D +++ L
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIHDMPNLRKVDASNNLITNIGTFDNLP 563
Query: 277 NLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGISD-- 314
L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 564 KLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLA 623
Query: 315 --GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTSLTGL 350
G L KL G+S L++L L + TG L+AL+ LT L
Sbjct: 624 PIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSDLTNL 683
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L+L D+G Y+ + L +L D+ IKD+S+L+ L Q L
Sbjct: 684 TELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQELTLE 734
Query: 411 DKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +E IS L+ L +LN +S ++I + P N+ + VTA++ Q+
Sbjct: 735 NNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN----QT 782
Query: 468 RDLPNLVSFR 477
LP ++S++
Sbjct: 783 YTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 4.8, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 351 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 396
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 397 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 450 LTLESCKVTANDIKRLQS-RDLPNLVS 475
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|254825619|ref|ZP_05230620.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-194]
gi|293594862|gb|EFG02623.1| cell wall surface anchor family protein [Listeria monocytogenes FSL
J1-194]
Length = 1775
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 116/452 (25%), Positives = 188/452 (41%), Gaps = 107/452 (23%)
Query: 99 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
+E L+ L NLTSL+ NN + L+NLV L+L R L ++GL+ L+
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS-NRTLVNLSGVEGLVNLQ 227
Query: 159 SLNIKWCNCITD----------------------------------------------SD 172
LN+ + D +D
Sbjct: 228 ELNVSANKALEDISQVAVLPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLTD 287
Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
+ L+ L LK+L I + S +A LKG KL L++ C L LG +
Sbjct: 288 LTSLAKLPKLKNLYIKGNASLKS-LATLKGATKLQLIDASNC-------TDLETLGDISG 339
Query: 233 LN-LNRCQLSDDGCEKFSRLT------NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 285
L+ L QLS GC K +T NL ++ DSC I D G +N L L+ L LSD
Sbjct: 340 LSELEMIQLS--GCSKLKEITSLKDLPNLVNITADSCAIEDLGTLN--NLPKLQTLILSD 395
Query: 286 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345
+ + + ++ + L+++ L GI+ S+ L L L+ L+L Q+T ++ +
Sbjct: 396 NK-DLTNINAITDMPQLKTLALDGCGIT--SIGTLDNLPKLEKLDLKENQLTS--ISEIN 450
Query: 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS- 404
L L++LD+ +T G L+ L L + L+D V + + SL +N+S
Sbjct: 451 DLPRLSYLDVSVNYLTTIGE--LKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVSN 506
Query: 405 --------------------QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 444
QN N++D + +I + L ++ SN+ IT+ G L
Sbjct: 507 NVIRTVGKMTELPSLKEFYAQNNNISD--ISMIHDMPNLRKVDASNNLITNIGT--FDNL 562
Query: 445 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476
L++L + S ++T + DLP+L +F
Sbjct: 563 PKLQNLDVHSNRITNTSV----IHDLPSLETF 590
Score = 44.7 bits (104), Expect = 0.10, Method: Composition-based stats.
Identities = 119/490 (24%), Positives = 198/490 (40%), Gaps = 107/490 (21%)
Query: 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
S L + LSG + LKD NL ++ + C I D G L L L +L N
Sbjct: 341 SELEMIQLSGCSKLKE-ITSLKDLPNLVNITADSC-AIEDLGT--LNNLPKLQTLILSDN 396
Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
+T + A + L L L+ C G L L KLE L++K + S+ +
Sbjct: 397 KDLT--NINAITDMPQLKTLALDGCGITSIG--TLDNLPKLEKLDLKENQLTSISE---I 449
Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
+ L L L +S + +T I LK L L LN+ ++ + +L+ SL Y+N++
Sbjct: 450 NDLPRLSYLDVSVNYLTT--IGELKKLPLLEWLNVSSNRLSD--VSTLTNFPSLNYINVS 505
Query: 237 RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN--------------------LTGLC 276
+ G K + L +L+ + I D +++ L
Sbjct: 506 NNVIRTVG--KMTELPSLKEFYAQNNNISDISMIHDMPNLRKVDASNNLITNIGTFDNLP 563
Query: 277 NLKCLELSDTQVGSSGLRH--------------------LSGLTNLESINLSFTGISD-- 314
L+ L++ ++ ++ + H + L L ++LSF I
Sbjct: 564 KLQNLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLA 623
Query: 315 --GSLRKLA------------------GLSSLKSLNLDARQITDTG----LAALTSLTGL 350
G L KL G+S L++L L + TG L+AL+ LT L
Sbjct: 624 PIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYTGTEGNLSALSDLTNL 683
Query: 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410
T L+L D+G Y+ + L +L D+ IKD+S+L+ L Q L
Sbjct: 684 TELNL-----RDNG--YISDISGLSTLSRLIYLNLDS--NKIKDISALSNLTTLQELTLE 734
Query: 411 DKTLELISGLTGLVSLN---VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 467
+ +E IS L+ L +LN +S ++I + P N+ + VTA++ Q+
Sbjct: 735 NNQIEDISALSDLDNLNKLALSKNKIID-----ISPAANMVN---RGASVTASN----QT 782
Query: 468 RDLPNLVSFR 477
LP ++S++
Sbjct: 783 YTLPTVLSYQ 792
Score = 39.3 bits (90), Expect = 4.2, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 30/207 (14%)
Query: 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350
S + L L NL S+NLS ISD L + L +L SLNL + + T L+ + L L
Sbjct: 170 SNIEGLQYLENLTSLNLSENNISD--LAPIKDLVNLVSLNLSSNR-TLVNLSGVEGLVNL 226
Query: 351 THLDLFGARITD--SGAAYLRNFK-------NLRSLEI---CGGGLTDAGVKHIK--DLS 396
L++ + + S A L K N+++LE+ G L + +++ DL+
Sbjct: 227 QELNVSANKALEDISQVAVLPVLKEISAQGCNIKTLELDNPAGAILPELETFYLQENDLT 286
Query: 397 SLT-------LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS 449
LT L NL N + K+L + G T L ++ SN L + L L
Sbjct: 287 DLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLET-LGDISGLSELEM 345
Query: 450 LTLESCKVTANDIKRLQS-RDLPNLVS 475
+ L C + +K + S +DLPNLV+
Sbjct: 346 IQLSGC----SKLKEITSLKDLPNLVN 368
>gi|83629995|gb|ABC26659.1| internalin F [Listeria monocytogenes]
Length = 820
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 162/323 (50%), Gaps = 32/323 (9%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITD--SDMKPLSGLTNLKSLQISC 189
+ K +LE T++ + + LE L N+K+ N + +D+ PLS LT L + I
Sbjct: 70 VTKEELESITQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGD 129
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSD-DGCEK 247
+K++D I+ L+ L +T L L + + L L+ L ++ L L +SD +
Sbjct: 130 NKISD--ISPLQNLTNVTDLYLVDNDI--SDLRPLANLTQMYSLRLGGNSNISDLNPVRN 185
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+RL NLE G + L L + +L L LSD Q+ L L+GLT L++I
Sbjct: 186 MTRLNNLE-----VTGSILKDLTPLADVTSLTRLTLSDNQI--EDLSPLAGLTKLDNIAA 238
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
I+D + + L+ L+ L+L + +ITD L+ + +L LT L L +IT+ +
Sbjct: 239 YSNKITD--ITPVTNLTRLQYLDLGSNEITD--LSPVANLQKLTSLHLANNQITN--ISM 292
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L + NL SL + ++D V +K+L+ +T L L N + D +++I GLT L SL
Sbjct: 293 LEDLTNLTSLGLQNNKISDISV--LKNLTHVTYLQLGYN-QIVD--VKIIGGLTNLTSLQ 347
Query: 428 VSNSRITSAGLRHLKPLKNLRSL 450
++ + IT + PL NL +
Sbjct: 348 LTQNHITD-----ISPLANLTKI 365
>gi|83749483|ref|ZP_00946473.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
gi|83723837|gb|EAP71025.1| Leucine-rich repeat family protein [Ralstonia solanacearum UW551]
Length = 546
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 4/349 (1%)
Query: 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
L+ ++LSG+ + L + L LD + C I L + LT+L+ RN
Sbjct: 180 LVRLNLSGNRIGPVEARLLANHPTLTELDVSHC-GIGPEEARALAASARLTTLNASRN-G 237
Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
+ +G++A L LDL L +L +LN+ N I + L+
Sbjct: 238 VGGEGVRALVDCKTLTSLDLSENGLGDAEAQRLGASERLTTLNVNR-NRIDVQGARALAD 296
Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
L SL I + + D+G+ L +LT LN+E V A + +L+ +L L ++
Sbjct: 297 CKTLTSLDIGGNSIGDAGVEALLANAQLTTLNVERAAVGAHGVRALADSKTLTSLRIDN- 355
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
+ D+G + + T+L +L+ +S GIG G L L L L +G +G +
Sbjct: 356 NIGDEGAKTLAASTSLTTLHSESNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLA 415
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358
T L S+++ G+SD +LA +L +L+ I D G AL + LT LD+
Sbjct: 416 NTTLVSLSVRRNGLSDAGATRLAASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN 475
Query: 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407
I ++GA L L SL++ + +AGV+ + +L+ L +S NC
Sbjct: 476 EIGNAGARALAANTRLASLDLRNNRMLEAGVRALLVNRTLSSLGVSFNC 524
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 168/382 (43%), Gaps = 8/382 (2%)
Query: 70 TDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFA 128
TD+ L L L+ LD + C I+ G+ HL L L L+ N I + A
Sbjct: 144 TDADLAGLPPT--LKELDLSRCRGCITAAGIAHLSRLP-LVRLNLS-GNRIGPVEARLLA 199
Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
L +LD+ C L +L +LN N + ++ L L SL +S
Sbjct: 200 NHPTLTELDVSHCGIGPEEARALAASARLTTLNASR-NGVGGEGVRALVDCKTLTSLDLS 258
Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
+ + D+ L ++LT LN+ + +L+ +L L++ + D G E
Sbjct: 259 ENGLGDAEAQRLGASERLTTLNVNRNRIDVQGARALADCKTLTSLDIGGNSIGDAGVEAL 318
Query: 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308
L +LN++ +G G+ L L L + D +G G + L+ T+L +++
Sbjct: 319 LANAQLTTLNVERAAVGAHGVRALADSKTLTSLRI-DNNIGDEGAKTLAASTSLTTLHSE 377
Query: 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 368
GI + LA + L +LNL I D G A + T L L + ++D+GA L
Sbjct: 378 SNGIGLAGAKALAANTRLTTLNLGHNGIGDAGAQAWLANTTLVSLSVRRNGLSDAGATRL 437
Query: 369 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428
K L +L+ + DAG + + +LT L++S N + + ++ T L SL++
Sbjct: 438 AASKTLTTLDAGDNAIKDAGARALAANRTLTTLDVSSN-EIGNAGARALAANTRLASLDL 496
Query: 429 SNSRITSAGLRHLKPLKNLRSL 450
N+R+ AG+R L + L SL
Sbjct: 497 RNNRMLEAGVRALLVNRTLSSL 518
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 109/262 (41%), Gaps = 52/262 (19%)
Query: 193 TDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251
TD+ +A L L++L L GC +TAA + LS L L LNL+ ++ +
Sbjct: 144 TDADLAGLPPTLKELDLSRCRGC-ITAAGIAHLSRL-PLVRLNLSGNRIGPVEARLLANH 201
Query: 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311
L L++ CGIG E L L L S VG G+R L L S++LS G
Sbjct: 202 PTLTELDVSHCGIGPEEARALAASARLTTLNASRNGVGGEGVRALVDCKTLTSLDLSENG 261
Query: 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371
+ D ++L L +LN++ +I D+ GAR L +
Sbjct: 262 LGDAEAQRLGASERLTTLNVNRNRI-----------------DVQGAR-------ALADC 297
Query: 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431
K L SL+I G + DAGV+ L N LT +LNV +
Sbjct: 298 KTLTSLDIGGNSIGDAGVEA-----------LLANAQLT--------------TLNVERA 332
Query: 432 RITSAGLRHLKPLKNLRSLTLE 453
+ + G+R L K L SL ++
Sbjct: 333 AVGAHGVRALADSKTLTSLRID 354
>gi|224089259|ref|XP_002308665.1| ein3-binding f-box protein 3 [Populus trichocarpa]
gi|222854641|gb|EEE92188.1| ein3-binding f-box protein 3 [Populus trichocarpa]
Length = 646
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 131/460 (28%), Positives = 206/460 (44%), Gaps = 78/460 (16%)
Query: 17 SRCLTEVSLEAF-RDC-ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG-SDVTDSG 73
S+ +T+V L A R C +L+ L L P V D+ + IA+ L +DLS +TD G
Sbjct: 176 SQGVTKVGLRAIARGCPSLKVLSLWNLPSVGDEGLSEIANGCHKLEKLDLSQCPAITDKG 235
Query: 74 LIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAG-- 129
L+ + K C NL L C I + GL+ + + +NL S+S + AI QG+ A
Sbjct: 236 LLAIAKSCPNLTDLVIESCTNIGNEGLQAVGQHCTNLKSISIKNCPAIGDQGIAALVSSA 295
Query: 130 --LINLVKLDLERCTRIHGGLV---------------------------NLKGLMKLESL 160
++ VKL T + +V N +GL KL+S+
Sbjct: 296 TNVLTKVKLQALNITDVSLAVVGHYGKAVTDLFLTSLSNVSERGFWVMGNGQGLQKLKSM 355
Query: 161 NIKWCNCITDSDMKPL-SGLTNLKSLQI-SCSKVTDSG-IAYLKGLQKLTLLNLEGCPVT 217
+ C +TD+ ++ + G NLK + CS ++D+G +++ K L L LE C
Sbjct: 356 TVASCVGLTDTGLEAVGKGCPNLKQFNLHKCSFLSDNGLVSFAKSAVSLESLLLEECHR- 414
Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGC----------EKFSRLTNLESLNLDSC-GIGD 266
+ GSL N S C + S +L SL++ +C G GD
Sbjct: 415 ---ITQFGFFGSLLNCGANLKAASLVNCFGIKDLKLDLPELSPCKSLRSLSIRNCPGFGD 471
Query: 267 EGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLES--INLSFTGISDGSLRKLAGL 323
L L LC L+ +ELS Q G + L L N E+ + ++ +G + S + ++ +
Sbjct: 472 GSLALLGKLCPQLQNVELSGLQ-GVTDAGFLPVLENCEAGLVKVNLSGCVNLSDKVVSVM 530
Query: 324 S-----SLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRS 376
+ +L+ LNLD R+ITD L A+ + L+ LD+ TDSG A + L +
Sbjct: 531 TEQHGWTLEVLNLDGCRRITDASLVAIAENCFLLSDLDVSKCATTDSGIAAVARSNQL-N 589
Query: 377 LEICGGGLTDAGVKHIKDLSSLTLLNLS--------QNCN 408
L++ L+ +G I D S L L+ L Q+CN
Sbjct: 590 LQV----LSMSGCSMISDKSLLALIKLGRTLLGLNLQHCN 625
>gi|83629993|gb|ABC26658.1| internalin F [Listeria monocytogenes]
gi|83630007|gb|ABC26665.1| internalin F [Listeria monocytogenes]
Length = 820
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 162/323 (50%), Gaps = 32/323 (9%)
Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESL-NIKWCNCITD--SDMKPLSGLTNLKSLQISC 189
+ K +LE T++ + + LE L N+K+ N + +D+ PLS LT L + I
Sbjct: 70 VTKEELESITQLSVYAKKIASIEGLEYLTNLKFLNLNGNQITDLSPLSNLTKLTEIYIGD 129
Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL-NRCQLSD-DGCEK 247
+K++D I+ L+ L +T L L + + L L+ L ++ L L +SD +
Sbjct: 130 NKISD--ISPLQNLTNVTDLYLVDNDI--SDLRPLANLTQMYSLRLGGNSNISDLNPVRN 185
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
+RL NLE G + L L + +L L LSD Q+ L L+GLT L++I
Sbjct: 186 MTRLNNLE-----VTGSILKDLTPLADVTSLTRLTLSDNQI--EDLSPLAGLTKLDNIAA 238
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 367
I+D + + L+ L+ L+L + +ITD L+ + +L LT L L +IT+ +
Sbjct: 239 YSNKITD--ITPVTNLTRLQYLDLGSNEITD--LSPVANLQKLTSLHLANNQITN--ISM 292
Query: 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427
L + NL SL + ++D V +K+L+ +T L L N + D +++I GLT L SL
Sbjct: 293 LEDLTNLTSLGLQNNKISDISV--LKNLTHVTYLQLGYN-QIVD--VKIIGGLTNLTSLQ 347
Query: 428 VSNSRITSAGLRHLKPLKNLRSL 450
++ + IT + PL NL +
Sbjct: 348 LTQNHITD-----ISPLANLTKI 365
>gi|255523038|ref|ZP_05390010.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
gi|255513153|gb|EET89421.1| leucine-rich repeat protein [Clostridium carboxidivorans P7]
Length = 421
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 22/235 (9%)
Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276
T ++ + L +L L L CQ+ D LTNL+ L L I D + L GL
Sbjct: 179 TIKYINGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELMLYDDNITD--ISPLKGLT 234
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
NL+ LEL Q+ + + L GLT L+ I+L I D +L L LS+L+ LNL +I
Sbjct: 235 NLEFLELYGNQI--TDIPSLEGLTKLKDIDLGNNKIHDITL--LRELSNLQELNLVYNKI 290
Query: 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 396
TD +++L LT L LDL I+D + L NL+SL + +TD + +K L+
Sbjct: 291 TD--ISSLKELTNLNSLDLDNNNISD--ISPLEKLSNLKSLSLGSNKITD--ISSLKGLT 344
Query: 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 451
+L L L N N+TD IS L GL +LN N + S + + PL+ L +L+
Sbjct: 345 NLNSLVLDDN-NITD-----ISPLKGLTNLNFLN--LGSNKISDISPLEGLTNLS 391
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 17/196 (8%)
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330
N+T L C SD + + + GL NL+S+ L++ I D + L GL++LK L
Sbjct: 163 NITELMEQNCGIKSDNTIKY--INGIEGLVNLQSLTLTYCQIED--ISPLKGLTNLKELM 218
Query: 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 390
L ITD ++ L LT L L+L+G +ITD + L L+ +++ + D +
Sbjct: 219 LYDDNITD--ISPLKGLTNLEFLELYGNQITDIPS--LEGLTKLKDIDLGNNKIHDITL- 273
Query: 391 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450
+++LS+L LNL N +TD + + LT L SL++ N+ I + + L+ L NL+SL
Sbjct: 274 -LRELSNLQELNLVYN-KITD--ISSLKELTNLNSLDLDNNNI--SDISPLEKLSNLKSL 327
Query: 451 TLESCKVTANDIKRLQ 466
+L S K+T DI L+
Sbjct: 328 SLGSNKIT--DISSLK 341
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 96/215 (44%), Gaps = 51/215 (23%)
Query: 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK---------------- 125
NLQSL +C QI D + L+GL+NL L +N +K
Sbjct: 191 NLQSLTLTYC-QIED--ISPLKGLTNLKELMLYDDNITDISPLKGLTNLEFLELYGNQIT 247
Query: 126 ---AFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD------------ 170
+ GL L +DL +IH + L+ L L+ LN+ + N ITD
Sbjct: 248 DIPSLEGLTKLKDIDLGN-NKIHD-ITLLRELSNLQELNLVY-NKITDISSLKELTNLNS 304
Query: 171 --------SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
SD+ PL L+NLKSL + +K+TD I+ LKGL L L L+ +T +
Sbjct: 305 LDLDNNNISDISPLEKLSNLKSLSLGSNKITD--ISSLKGLTNLNSLVLDDNNITD--IS 360
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257
L L +L +LNL ++SD LTNL +L
Sbjct: 361 PLKGLTNLNFLNLGSNKISD--ISPLEGLTNLSTL 393
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,681,978,253
Number of Sequences: 23463169
Number of extensions: 263090729
Number of successful extensions: 856167
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5162
Number of HSP's successfully gapped in prelim test: 18016
Number of HSP's that attempted gapping in prelim test: 692138
Number of HSP's gapped (non-prelim): 92777
length of query: 479
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 333
effective length of database: 8,933,572,693
effective search space: 2974879706769
effective search space used: 2974879706769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)