BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011688
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 45/244 (18%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 186
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ L L+ L SL N Q+SD LTNL+ L+L+ + D G L
Sbjct: 187 -----ISVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG--TL 234
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+
Sbjct: 235 ASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 290
Query: 333 ARQI 336
Q+
Sbjct: 291 ENQL 294
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 340
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 118/244 (48%), Gaps = 45/244 (18%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 96 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ LN + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 186
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ L L+ L SL N Q+SD LTNL+ L+L+ + D G L
Sbjct: 187 -----ISVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG--TL 234
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+
Sbjct: 235 ASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 290
Query: 333 ARQI 336
Q+
Sbjct: 291 ENQL 294
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 287 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 340
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 117/244 (47%), Gaps = 45/244 (18%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 191
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ L L+ L SL N Q+SD LTNL+ L+L+ + D G L
Sbjct: 192 -----ISVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG--TL 239
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+
Sbjct: 240 ASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 295
Query: 333 ARQI 336
Q+
Sbjct: 296 ENQL 299
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 292 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 345
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 117/244 (47%), Gaps = 45/244 (18%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D + L L+NLT L+ NN IT + L NL +L+L T + L
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
GL L+ L + N +TD +KPL+ LT L+ L IS +KV+D
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSD------------------ 190
Query: 213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL 272
+ L L+ L SL N Q+SD LTNL+ L+L+ + D G L
Sbjct: 191 -----ISVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG--TL 238
Query: 273 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332
L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +L L+
Sbjct: 239 ASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELN 294
Query: 333 ARQI 336
Q+
Sbjct: 295 ENQL 298
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 231 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L + +KV+D
Sbjct: 291 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFANNKVSD 344
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 43/264 (16%)
Query: 76 HLKDCSNLQSLDFNFCIQI-SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134
++ D S L +L + + + ++ L L LSN T L++ +T +K + NL
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYL---TVTESKVKDVTPIANLT 177
Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNI--KWCNCITDSDMKPLSGLTNLKSLQISCSKV 192
DL + + + ++ L L SL+ + N ITD + P++ T L SL+I +K+
Sbjct: 178 --DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANXTRLNSLKIGNNKI 233
Query: 193 TDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLT 252
TD L L+ L L +L + Q+SD K LT
Sbjct: 234 TD--------------------------LSPLANLSQLTWLEIGTNQISDINAVK--DLT 265
Query: 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312
L+ LN+ S I D ++N L L L L++ Q+G+ + GLTNL ++ LS I
Sbjct: 266 KLKXLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 313 SDGSLRKLAGLSSLKSLNLDARQI 336
+D +R LA LS S + A Q+
Sbjct: 324 TD--IRPLASLSKXDSADF-ANQV 344
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 42/199 (21%)
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
E+ I G ++ L LE LN+ N ITD + PLS L L +L I +K+TD
Sbjct: 54 EKVASIQG----IEYLTNLEYLNLN-GNQITD--ISPLSNLVKLTNLYIGTNKITD---- 102
Query: 199 YXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLN 258
+ L +L+ L L+ LN +SD + LT SLN
Sbjct: 103 -------------------ISALQNLTNLRELY---LNEDNISD--ISPLANLTKXYSLN 138
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLE-LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 317
L + L +L+ L N L L+ T+ + ++ LT+L S++L++ I D +
Sbjct: 139 LG----ANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--I 192
Query: 318 RKLAGLSSLKSLNLDARQI 336
LA L+SL QI
Sbjct: 193 SPLASLTSLHYFTAYVNQI 211
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 44/260 (16%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG---LVNLKGLMKLE 158
++G+ LT+L + + + + L NLVKL T ++ G + ++ L L
Sbjct: 59 IQGIEYLTNLEYLN---LNGNQITDISPLSNLVKL-----TNLYIGTNKITDISALQNLT 110
Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCS-KVTD-------SGIAYXXXXXXXXXXX 210
+L + N SD+ PL+ LT SL + + ++D +G+ Y
Sbjct: 111 NLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDV 170
Query: 211 XEGCPVT-----------AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259
+T + L++L SL Y Q++D + + N LN
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD-----ITPVANXTRLN- 224
Query: 260 DSCGIGDEGLVNLTGLCNLK---CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 316
S IG+ + +L+ L NL LE+ Q+ S + + LT L+ +N+ ISD S
Sbjct: 225 -SLKIGNNKITDLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDIS 281
Query: 317 LRKLAGLSSLKSLNLDARQI 336
+ L LS L SL L+ Q+
Sbjct: 282 V--LNNLSQLNSLFLNNNQL 299
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L T + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYXXXXXXXXX 208
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD +A
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 209 XXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+ + + L L+ L SL N Q+SD LTNL+ L+L+ + D G
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG 233
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +
Sbjct: 234 --TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 329 LNLDARQI 336
L L+ Q+
Sbjct: 288 LELNENQL 295
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 341
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L T + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYXXXXXXXXX 208
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD +A
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 209 XXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+ + + L L+ L SL N Q+SD LTNL+ L+L+ + D G
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG 233
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +
Sbjct: 234 --TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 329 LNLDARQI 336
L L+ Q+
Sbjct: 288 LELNENQL 295
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFYNNKVSD 341
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 115/248 (46%), Gaps = 23/248 (9%)
Query: 92 IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
I S+ L + L NLT L NN I + A L NL L T + +
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYXXXXXXXXX 208
++ L L +LN + T SD+ LSGLT+L+ L S ++VTD +A
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 209 XXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268
+ + + L L+ L SL N Q+SD LTNL+ L+L+ + D G
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATN---NQISD--ITPLGILTNLDELSLNGNQLKDIG 233
Query: 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328
L L NL L+L++ Q+ S L LSGLT L + L IS+ + LAGL++L +
Sbjct: 234 --TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 329 LNLDARQI 336
L L+ Q+
Sbjct: 288 LELNENQL 295
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
LKD L SL + +++ + +L LS LT L+ + A + AGL L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 136 LDL-ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
L+L E + NLK L L + N I SD+ P+S LT L+ L S +KV+D
Sbjct: 288 LELNENQLEDISPISNLKNLTYLT----LYFNNI--SDISPVSSLTKLQRLFFSNNKVSD 341
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 31/188 (16%)
Query: 170 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 225
+SD+K + G L NL SL +S +++TD S I Y + + L +L
Sbjct: 53 NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 226 ALGSLFYLNLNRCQL---------------SDDGCEKFS---RLTNLESLNLDSCGIGDE 267
LG LF L+ N+ + +G + L LESL L + I D
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD- 168
Query: 268 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327
+ L+ L L L L D Q+ S + L+GLT L+++ LS ISD LR LAGL +L
Sbjct: 169 -ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLD 223
Query: 328 SLNLDARQ 335
L L +++
Sbjct: 224 VLELFSQE 231
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 129 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 184
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 185 NHISD--LRALAGLKNLDVLELFSQE 208
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 187
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 188 NHISD--LRALAGLKNLDVLELFSQE 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 130 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 185
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 186 NHISD--LRALAGLKNLDVLELFSQE 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 187
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 188 NHISD--LRALAGLKNLDVLELFSQE 211
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGC-EKFSRLTNLE----SLNLDSCG-IGDEGLVNLTG 274
D + L + + L +C +DGC E+ S+L NL+ + + SCG + D+G++ L
Sbjct: 78 FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
NLK L LSD L G+ E I +F
Sbjct: 138 FRNLKYLFLSD----------LPGVKEKEKIVQAF 162
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 335
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 336 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 377
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 205
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 206 NHISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 205
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 206 NHISD--LRALAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 150 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 205
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 206 NHISD--LRALAGLKNLDVLELFSQE 229
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGC-EKFSRLTNLE----SLNLDSCG-IGDEGLVNLTG 274
D + L + + L +C +DGC E+ S+L NL+ + + SCG + D+G++ L
Sbjct: 78 FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137
Query: 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
NLK L LSD L G+ E I +F
Sbjct: 138 FRNLKYLFLSD----------LPGVKEKEKIVQAF 162
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNLDARQ 335
++ ++ +D+ + S G H+ GL +E I L I DG L +L+ L +L+ L+
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 336 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSL 377
I +TD G L +F+NL+ L
Sbjct: 122 ISC-------------------GNVTDKGIIALHHFRNLKYL 144
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 147 GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ-----ISCSKVTDSGI 197
G +++GL +E + + C+ I D ++ LS L NL+ ISC VTD GI
Sbjct: 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309
L LESL L + I D + L+ L L L L D Q+ S + L+GLT L+++ LS
Sbjct: 127 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSK 182
Query: 310 TGISDGSLRKLAGLSSLKSLNLDARQ 335
ISD LR LAGL +L L L +++
Sbjct: 183 NHISD--LRALAGLKNLDVLELFSQE 206
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 12/175 (6%)
Query: 89 NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL---ERCTRIH 145
N+ I G E+L L L + RNN I + AF + +L++LDL ++ I
Sbjct: 133 NWLTVIPSGAFEYLSKLREL----WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXX 205
G +GL L+ LN+ CN DM L+ L L+ L++S + +
Sbjct: 189 EGA--FEGLFNLKYLNLGMCNI---KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 206 XXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260
V+ ++ L SL LNL LS + F+ L L L+L
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
F L NL+ LNL C I D + NLT L L+ LE+S GL++L+ + +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 308 SFTGISDGSLRKLAGLSSLKSLNL 331
+ +S GL+SL LNL
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNL 273
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
FS T+LE L L I GL +L L LS +GS R L LE ++L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQI 336
S+ I + GL +LK L LD Q+
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 74 QITD--LAPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 126
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V+D
Sbjct: 127 GLSNLQVLYLD-LNQITN--ISPLAGLTNLQYLSIGNAQVSD 165
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 259 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSL 317
L + G G + + L NL LEL D Q+ + L++L+ +T LE +G ++
Sbjct: 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELE-----LSGNPLKNV 100
Query: 318 RKLAGLSSLKSLNLDARQI 336
+AGL S+K+L+L + QI
Sbjct: 101 SAIAGLQSIKTLDLTSTQI 119
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-- 133
+ D + L++L +++S L+++ ++ L S+ + + AGL NL
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
+ LDL + T I L GL L+ L+I SD+ PL+ L+ L +L+ +K++
Sbjct: 134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKADDNKIS 186
Query: 194 D 194
D
Sbjct: 187 D 187
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 4/182 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 210
K L LE L + N + ++ +GL +L +L++ +++T
Sbjct: 55 FKHLRHLEILQLS-KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSRLTNLESLNLDSCGIGDEGL 269
P+ + + + + SL L+L + + E F L NL LNL C + D +
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--I 171
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
NLT L L+ LELS ++ GLT+L + L ++ L SL+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 330 NL 331
NL
Sbjct: 232 NL 233
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
QI+D L L+ L+ +T L N + + A AGL ++ LDL T+I + L
Sbjct: 80 QITD--LTPLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDL-TSTQITD-VTPLA 132
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
GL L+ L + N IT+ + PL+GLTNL+ L I ++V D
Sbjct: 133 GLSNLQVLYLDL-NQITN--ISPLAGLTNLQYLSIGNNQVND 171
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 275 LCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333
L NL LEL D Q+ + L++L+ +T LE +G ++ +AGL S+K+L+L +
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELE-----LSGNPLKNVSAIAGLQSIKTLDLTS 122
Query: 334 RQI 336
QI
Sbjct: 123 TQI 125
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 4/182 (2%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 210
K L LE L + N + ++ +GL +L +L++ +++T
Sbjct: 55 FKHLRHLEILQLS-KNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELW 113
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSRLTNLESLNLDSCGIGDEGL 269
P+ + + + + SL L+L + + E F L NL LNL C + D +
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD--I 171
Query: 270 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329
NLT L L+ LELS ++ GLT+L + L ++ L SL+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 330 NL 331
NL
Sbjct: 232 NL 233
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXX 210
++G+ L ++ + N +D+KPL+ L NL L + +KV D
Sbjct: 59 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 118
Query: 211 XEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV 270
G + ++ L L L L L +++D SRLT L++L+L+ I +V
Sbjct: 119 HNGI----SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--RRIV 170
Query: 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
L L L+ L LS + S LR L GL NL+ + L
Sbjct: 171 PLARLTKLQNLYLSKNHI--SDLRALRGLKNLDVLEL 205
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 83/209 (39%), Gaps = 15/209 (7%)
Query: 117 NAITAQGMKAFAGLINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
N ++A AF L NL L L R I G+ GL L L+I + D
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV--FTGLSNLTKLDISENKIVILLDYM 123
Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLN 234
L NLKSL++ + + E C +T+ ++LS L L L
Sbjct: 124 -FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182
Query: 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSD---TQVGS 290
L ++ F RL L+ L + D N L GL NL L ++ T V
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY 241
Query: 291 SGLRHLSGLTNLESINLSFTGIS--DGSL 317
+RHL L +NLS+ IS +GS+
Sbjct: 242 LAVRHL---VYLRFLNLSYNPISTIEGSM 267
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
QL F L L +L+LD CG+ + G GL L+ L L D + +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L NL + L IS R GL SL L L ++
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%)
Query: 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298
QL F L L +L+LD CG+ + G GL L+ L L D + +
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 150
Query: 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L NL + L IS R GL SL L L ++
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
SL A L LNL + ++S + FS L +LE L+L IG E
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 425
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 48 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLR 294
+ LS F L++L+ LNL G+ +L L NL+ L + + + S R
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 167
Query: 295 -HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+GLT+L + + + + + L + + L L
Sbjct: 168 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 205
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
SL A L LNL + ++S + FS L +LE L+L IG E
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 430
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 177 SGLTN-LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNL 235
SGLT +KSL +S +K+T G + + D+ +LGSL +L+L
Sbjct: 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLR 294
+ LS F L++L+ LNL G+ +L L NL+ L + + + S R
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 295 -HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331
+GLT+L + + + + + L + + L L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 32/165 (19%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
F N I + GL N+ L+L+R ++L L K++ + +W C+ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
M+ P +GL NLK L +S S + + T
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE 267
SL A L LNL + ++S + FS L +LE L+L IG E
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%)
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 282
+ S L +L +L+L RCQ++ + F L ++ L + +LTG LK L
Sbjct: 51 TFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLF 110
Query: 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 336
L+ T + + + L NLES++L IS +L + +LK L+ I
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAI 164
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 81 SNLQSLDF--NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
+NL +L+ N I +G +L L L + RNN I + AF + +L +LDL
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKEL----WLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 139 ---ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182
+R + I G +GL L LN+ CN ++ PL L L
Sbjct: 168 GELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL---DSCGIGDEGLVNLTGLCNL 278
DS S+LGSL +L+L+ LS+ F L++L LNL +G+ L + L L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKL 125
Query: 279 KCLELSDTQVGSSGLRH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+ L + + + R +GLT LE + + + + + L + ++ L L +Q
Sbjct: 126 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
+ C++L S+D + ++ + G RG ++L++++F ++ G AF G INL K+
Sbjct: 316 FESCTSLVSIDLPYLVE--EIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371
Query: 137 DLER 140
+L +
Sbjct: 372 ELPK 375
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
F L +L +L+LD CG+ + G GL L+ L L D + + L NL + L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 308 SFTGISDGSLRKLAGLSSLKSLNLDARQI 336
I GL SL L L +
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 54/229 (23%)
Query: 253 NLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGSSGLRHL-SGLTN----LE 303
++ L+L +CG+ + G L G L L+ L L+D +G +GL+ L GL + LE
Sbjct: 82 KIQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLE 141
Query: 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQIXXXXXXXXXXXXXXXXXDLF--GARIT 361
+ L + ++ S LA + +K+ D +++ DL G RI
Sbjct: 142 KLQLEYCNLTATSCEPLASVLRVKA---DFKELVLSNN------------DLHEPGVRIL 186
Query: 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXXXXXXXXXXXXXXXTDKTLELISGLT 421
G + L SL++ G+T A K + D +++
Sbjct: 187 CQGLK--DSACQLESLKLENCGITAANCKDLCD---------------------VVASKA 223
Query: 422 GLVSLNVSNSRITSAGLRH-----LKPLKNLRSLTLESCKVTANDIKRL 465
L L++S++++ +AG+ L P LR+L L C +TA K L
Sbjct: 224 SLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDL 272
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL---DSCGIGDEGLVNLTGLCNL 278
DS S+LGSL +L+L+ LS+ F L++L LNL +G+ L + L L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKL 151
Query: 279 KCLELSDTQVGSSGLRH-LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335
+ L + + + R +GLT LE + + + + + L + ++ L L +Q
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
+ +L L +L YL L QL F +LTNL+ L L + L NL
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFT---GISDGSLRKLAGLSSLK 327
L L+ Q+ S LTNL ++LS+ + +G KL L L+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 176 LSGL--TNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYL 233
SGL TNL L +S + + D G E + S L +L YL
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Query: 234 NLNRCQL-------SDDGCEKFS--RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284
+L R S + FS L LE LN+D I TGL +LK L LS
Sbjct: 302 SLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 285 DT 286
T
Sbjct: 362 KT 363
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S + L L+L+RC++ +DG + L++L +L L I L +GL +L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQI 336
L +T + S + L L+ +N++ I L + + L++L+ L+L + +I
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S + L L+L+RC++ +DG + L++L +L L I L +GL +L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQI 336
L +T + S + L L+ +N++ I L + + L++L+ L+L + +I
Sbjct: 107 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4EZG|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
pdb|4EZG|B Chain B, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Lmof2365_1307) From Listeria Monocytogenes Str. Li 2 At
1.50 A Resolution
Length = 197
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
+ GLSNL L + +T+ + +GL +L LD+ L + L K+ S++
Sbjct: 84 ISGLSNLERLRIXGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
+ + IT D+ PL L LKSL I V D
Sbjct: 143 LSYNGAIT--DIXPLKTLPELKSLNIQFDGVHD 173
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307
S L+NLE L + + + + NL+GL +L L++S + S L ++ L + SI+L
Sbjct: 84 ISGLSNLERLRIXGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 308 SFTG-ISDGSLRKLAGLSSLKSLNL 331
S+ G I+D + L L LKSLN+
Sbjct: 144 SYNGAITD--IXPLKTLPELKSLNI 166
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLE-SLNIK--WCNCITDSDMKPLSGLTNLKSLQIS 188
N+ + T I +N+ L +E + NIK N I ++ P+SGL+NL+ L+I
Sbjct: 37 NITEAQXNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIX 96
Query: 189 CSKVTDSGIA 198
VT I
Sbjct: 97 GKDVTSDKIP 106
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S + L L+L+RC++ +DG + L++L +L L I L +GL +L+
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQI 336
L +T + S + L L+ +N++ I L + + L++L+ L+L + +I
Sbjct: 106 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S + L L+L+RC++ +DG + L++L +L L I L +GL +L+
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQI 336
L +T + S + L L+ +N++ I L + + L++L+ L+L + +I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
N GL +LE L+ + N S+ L NL L IS + +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 210 XXEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDS 261
G L D + L +L +L+L++CQL F+ L++L+ LN+ S
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRI 144
L FN I +S L GL L L F+ +N F L NL+ LD+ TR+
Sbjct: 380 LSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 145 -HGGLVNLKGLMKLESLNI 162
G+ N GL LE L +
Sbjct: 436 AFNGIFN--GLSSLEVLKM 452
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRI 144
L FN I +S L GL L L F+ +N F L NL+ LD+ TR+
Sbjct: 404 LSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 145 -HGGLVNLKGLMKLESLNI 162
G+ N GL LE L +
Sbjct: 460 AFNGIFN--GLSSLEVLKM 476
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 423 LVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLV 474
L LN+S ++I + + LK L+NL+SL L +C+VT ND + + LP L
Sbjct: 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELS 284
L +L YL L QL F +LTNL L+LD+ + EG+ + L LK L L+
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD--KLTQLKQLSLN 189
Query: 285 DTQVGSSGLRHLSGLTNLESINL 307
D Q+ S LT+L I L
Sbjct: 190 DNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRI 144
L FN I +S L GL L L F+ +N F L NL+ LD+ TR+
Sbjct: 85 LSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 145 -HGGLVNLKGLMKLESLNI 162
G+ N GL LE L +
Sbjct: 141 AFNGIFN--GLSSLEVLKM 157
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 223 SLSALGSLFYLNLNRCQLS--DDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280
S + L L+L+RC++ +DG + L++L +L L I L +GL +L+
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 106
Query: 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQI 336
L +T + S + L L+ +N++ I L + + L++L+ L+L + +I
Sbjct: 107 LVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 86 LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC-TRI 144
L FN I +S L GL L L F+ +N F L NL+ LD+ TR+
Sbjct: 380 LSFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 145 -HGGLVNLKGLMKLESLNI 162
G+ N GL LE L +
Sbjct: 436 AFNGIFN--GLSSLEVLKM 452
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK----FSRLTNLESLNLDSCGIGDEGL 269
C V AA L S +L +NL CQL G F R L L L+S +G E
Sbjct: 89 CTVVAAVLGS--GRHALDEVNLASCQLDPAGLRTLLPVFLRARKL-GLQLNS--LGPEAC 143
Query: 270 VNLTGL-----CNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKL 320
+L L C + L LS+ + ++G + L+G T++ ++L TG+ D L L
Sbjct: 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203
Query: 321 AG 322
A
Sbjct: 204 AA 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,822,127
Number of Sequences: 62578
Number of extensions: 352460
Number of successful extensions: 1057
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 244
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)