Query 011688
Match_columns 479
No_of_seqs 302 out of 3070
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.5E-41 1.2E-45 349.7 21.1 418 32-458 119-560 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-41 1.3E-45 349.3 20.0 420 51-478 112-554 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-37 2.5E-42 277.9 3.1 392 58-455 53-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.2E-36 1.3E-40 266.9 4.1 377 48-430 69-448 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.1E-28 2.4E-33 223.0 -4.1 345 100-455 26-372 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 6.9E-28 1.5E-32 217.9 -7.0 345 105-459 6-353 (1255)
7 KOG0618 Serine/threonine phosp 99.9 6.8E-27 1.5E-31 220.3 -2.6 382 59-457 47-488 (1081)
8 KOG0472 Leucine-rich repeat pr 99.9 5.7E-28 1.2E-32 206.8 -10.5 393 59-466 47-549 (565)
9 PLN03210 Resistant to P. syrin 99.9 7.4E-22 1.6E-26 206.5 18.3 357 58-432 533-904 (1153)
10 KOG0618 Serine/threonine phosp 99.9 8.8E-25 1.9E-29 206.2 -3.5 408 32-459 46-514 (1081)
11 KOG0472 Leucine-rich repeat pr 99.9 2.2E-25 4.7E-30 191.1 -10.2 364 56-435 113-542 (565)
12 PLN03210 Resistant to P. syrin 99.9 4.8E-21 1E-25 200.4 18.6 342 98-456 550-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 1.2E-18 2.5E-23 159.3 24.3 255 201-456 20-318 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 9.2E-18 2E-22 153.4 23.6 257 176-433 19-319 (319)
15 KOG4237 Extracellular matrix p 99.8 3.8E-21 8.2E-26 164.9 -3.3 137 53-191 63-199 (498)
16 KOG4237 Extracellular matrix p 99.7 8.4E-20 1.8E-24 156.7 -2.3 275 156-432 68-357 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 3.1E-15 6.7E-20 146.1 12.7 265 131-441 201-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 6.9E-15 1.5E-19 143.7 11.9 265 155-465 201-465 (788)
19 KOG4341 F-box protein containi 99.5 2.9E-14 6.4E-19 124.0 9.6 87 56-142 137-227 (483)
20 PRK15370 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 136.5 10.8 203 156-386 179-381 (754)
21 KOG1909 Ran GTPase-activating 99.5 3.7E-13 8.1E-18 114.7 12.6 193 273-466 89-321 (382)
22 KOG4341 F-box protein containi 99.5 1.5E-13 3.2E-18 119.8 7.8 297 155-475 138-456 (483)
23 PRK15370 E3 ubiquitin-protein 99.4 6.3E-13 1.4E-17 130.9 11.1 247 132-410 179-428 (754)
24 KOG1909 Ran GTPase-activating 99.4 2.1E-12 4.5E-17 110.2 11.7 231 176-406 26-308 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.4 2E-14 4.4E-19 143.6 -0.8 208 2-214 451-678 (889)
26 KOG2120 SCF ubiquitin ligase, 99.3 4E-12 8.7E-17 106.0 7.4 256 2-262 101-373 (419)
27 PF14580 LRR_9: Leucine-rich r 99.2 4E-12 8.8E-17 101.6 3.3 106 324-434 19-126 (175)
28 KOG2120 SCF ubiquitin ligase, 99.2 1.8E-11 3.9E-16 102.2 7.0 179 253-431 186-373 (419)
29 KOG3207 Beta-tubulin folding c 99.2 1.8E-12 3.9E-17 113.8 0.6 209 226-435 119-340 (505)
30 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.6E-18 104.7 -6.3 135 102-241 52-186 (264)
31 KOG3207 Beta-tubulin folding c 99.2 1.1E-11 2.3E-16 109.0 2.3 207 32-240 122-338 (505)
32 KOG4658 Apoptotic ATPase [Sign 99.1 1.8E-11 4E-16 122.7 2.1 182 55-242 543-731 (889)
33 KOG0617 Ras suppressor protein 99.1 6.9E-13 1.5E-17 101.3 -7.6 158 251-437 32-189 (264)
34 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-10 1.2E-14 89.4 5.8 125 300-429 19-148 (175)
35 KOG1259 Nischarin, modulator o 99.0 1.7E-10 3.7E-15 96.7 1.6 130 323-459 283-413 (490)
36 COG5238 RNA1 Ran GTPase-activa 99.0 1.1E-08 2.3E-13 84.8 11.8 189 247-435 87-317 (388)
37 COG5238 RNA1 Ran GTPase-activa 98.8 1.3E-07 2.9E-12 78.5 14.0 207 248-455 26-282 (388)
38 KOG1259 Nischarin, modulator o 98.7 4.1E-09 9E-14 88.5 2.3 129 204-338 284-413 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 1.4E-09 3.1E-14 71.4 -0.7 59 397-456 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 6.1E-09 1.3E-13 68.3 0.6 59 348-406 1-59 (61)
41 KOG3665 ZYG-1-like serine/thre 98.6 1.4E-07 3E-12 92.8 8.8 127 346-476 146-280 (699)
42 PLN03150 hypothetical protein; 98.5 1.1E-07 2.5E-12 93.7 6.0 105 350-455 420-525 (623)
43 COG4886 Leucine-rich repeat (L 98.5 1.6E-07 3.4E-12 88.5 5.8 149 301-457 141-289 (394)
44 KOG2982 Uncharacterized conser 98.5 1.1E-07 2.3E-12 80.2 3.8 203 250-453 69-287 (418)
45 PLN03150 hypothetical protein; 98.5 3E-07 6.4E-12 90.8 7.0 106 326-432 420-526 (623)
46 KOG0532 Leucine-rich repeat (L 98.5 3.4E-09 7.4E-14 96.8 -6.2 108 350-463 145-252 (722)
47 KOG3665 ZYG-1-like serine/thre 98.4 2E-07 4.4E-12 91.7 5.3 106 32-140 123-229 (699)
48 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.4E-13 94.5 -4.5 197 227-434 83-292 (1096)
49 COG4886 Leucine-rich repeat (L 98.3 7.7E-07 1.7E-11 83.8 5.5 194 184-386 97-291 (394)
50 KOG1947 Leucine rich repeat pr 98.3 5.7E-07 1.2E-11 87.5 4.5 139 49-187 180-328 (482)
51 KOG2982 Uncharacterized conser 98.3 2.9E-07 6.2E-12 77.6 2.0 205 254-459 47-263 (418)
52 KOG1859 Leucine-rich repeat pr 98.3 5.3E-08 1.2E-12 91.8 -3.5 196 202-407 82-290 (1096)
53 KOG0531 Protein phosphatase 1, 98.2 6.4E-08 1.4E-12 91.2 -3.3 219 226-458 70-290 (414)
54 KOG1947 Leucine rich repeat pr 98.2 2.7E-06 5.8E-11 82.8 7.6 131 226-356 186-329 (482)
55 KOG0531 Protein phosphatase 1, 98.2 1.1E-07 2.3E-12 89.7 -2.8 243 202-459 70-319 (414)
56 KOG1644 U2-associated snRNP A' 98.0 7.5E-06 1.6E-10 65.3 4.3 103 350-455 44-150 (233)
57 KOG3864 Uncharacterized conser 97.9 8.8E-06 1.9E-10 65.0 3.4 82 374-455 103-186 (221)
58 KOG4579 Leucine-rich repeat (L 97.9 3.4E-06 7.3E-11 62.7 0.2 113 324-439 27-141 (177)
59 KOG0532 Leucine-rich repeat (L 97.9 3.2E-07 6.9E-12 84.3 -6.4 166 232-406 79-244 (722)
60 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.5E-10 47.4 2.5 36 422-458 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 4E-10 47.2 2.3 38 396-435 1-38 (44)
62 KOG4579 Leucine-rich repeat (L 97.7 9E-06 1.9E-10 60.5 0.9 107 302-411 29-137 (177)
63 KOG2123 Uncharacterized conser 97.7 6.2E-06 1.3E-10 69.1 -0.5 101 323-427 18-123 (388)
64 PF13306 LRR_5: Leucine rich r 97.7 1.8E-05 3.9E-10 61.3 2.0 13 392-404 77-89 (129)
65 KOG1644 U2-associated snRNP A' 97.7 1.5E-05 3.3E-10 63.6 1.2 103 372-477 42-146 (233)
66 PF13306 LRR_5: Leucine rich r 97.6 2.6E-05 5.6E-10 60.4 1.9 122 295-423 7-128 (129)
67 KOG2123 Uncharacterized conser 97.6 1.8E-05 3.9E-10 66.4 0.2 110 347-463 18-133 (388)
68 KOG3864 Uncharacterized conser 97.5 5.9E-05 1.3E-09 60.4 1.9 82 59-140 103-185 (221)
69 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.4E-09 61.5 1.4 104 180-285 43-152 (260)
70 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 59.4 1.8 85 345-429 62-151 (260)
71 PRK15386 type III secretion pr 97.0 0.0019 4E-08 59.2 6.7 56 249-310 49-104 (426)
72 PRK15386 type III secretion pr 96.9 0.0017 3.6E-08 59.4 5.5 159 271-455 47-210 (426)
73 KOG4308 LRR-containing protein 96.2 0.00067 1.5E-08 64.3 -1.6 184 254-438 89-307 (478)
74 KOG4308 LRR-containing protein 95.5 0.0018 3.8E-08 61.6 -1.9 187 278-465 89-310 (478)
75 smart00367 LRR_CC Leucine-rich 95.4 0.02 4.3E-07 29.5 2.7 24 80-103 1-24 (26)
76 PF13516 LRR_6: Leucine Rich r 94.1 0.034 7.3E-07 28.0 1.5 21 445-465 2-22 (24)
77 smart00367 LRR_CC Leucine-rich 93.5 0.11 2.5E-06 26.7 2.8 24 105-128 1-24 (26)
78 PF00560 LRR_1: Leucine Rich R 93.0 0.027 5.9E-07 27.6 -0.0 14 422-435 1-14 (22)
79 PF13504 LRR_7: Leucine rich r 92.3 0.067 1.4E-06 24.3 0.7 12 422-433 2-13 (17)
80 PF13516 LRR_6: Leucine Rich r 91.8 0.12 2.5E-06 26.0 1.4 13 373-385 3-15 (24)
81 smart00368 LRR_RI Leucine rich 89.9 0.37 8E-06 25.3 2.3 22 445-466 2-23 (28)
82 smart00369 LRR_TYP Leucine-ric 88.7 0.3 6.6E-06 25.0 1.4 21 421-441 2-22 (26)
83 smart00370 LRR Leucine-rich re 88.7 0.3 6.6E-06 25.0 1.4 21 421-441 2-22 (26)
84 KOG3763 mRNA export factor TAP 85.9 0.93 2E-05 43.1 3.8 66 369-435 215-284 (585)
85 smart00365 LRR_SD22 Leucine-ri 66.4 4 8.6E-05 21.0 1.2 14 421-434 2-15 (26)
86 KOG3763 mRNA export factor TAP 58.0 7.9 0.00017 37.2 2.4 60 346-407 216-281 (585)
87 smart00364 LRR_BAC Leucine-ric 54.0 6.3 0.00014 20.2 0.6 14 422-435 3-16 (26)
88 PF14162 YozD: YozD-like prote 45.5 25 0.00054 21.3 2.2 18 4-21 11-28 (57)
89 KOG0473 Leucine-rich repeat pr 38.0 0.98 2.1E-05 37.9 -5.9 88 344-435 38-125 (326)
90 KOG0473 Leucine-rich repeat pr 36.2 1.6 3.5E-05 36.6 -4.9 86 74-164 35-120 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-41 Score=349.67 Aligned_cols=418 Identities=20% Similarity=0.196 Sum_probs=221.6
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
.++.+.++++..... ......++|++|++++|.+....+..+..+++|++|++++| .+....+..++++++|++|
T Consensus 119 ~L~~L~Ls~n~l~~~----~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 119 SLRYLNLSNNNFTGS----IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCEEECcCCccccc----cCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCee
Confidence 566666665532110 00123566777777777666555666677777777777764 4444455666677777777
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 191 (479)
++++|. +....|..++++++|++|++++|......+..+.++++|++|+++++. +....+..+.++++|+.|++++|.
T Consensus 194 ~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 194 TLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCe
Confidence 777665 344556666667777777776665544555566666666666666633 333344455666666666666665
Q ss_pred CChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHH
Q 011688 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271 (479)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (479)
+.+..+..+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 55544555555666666666666555444555555555666666555555444444555555555555555544444444
Q ss_pred HhcCCCCCEEeccCcccCh------------------------hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCc
Q 011688 272 LTGLCNLKCLELSDTQVGS------------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327 (479)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (479)
+..+++|+.|++++|.+.. ..+..+..+++|+.|++.+|.+....+..+..+++|+
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 4445555555555444433 3333344444555555555444433334444445555
Q ss_pred EEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCC
Q 011688 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 407 (479)
.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 509 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN- 509 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC-
Confidence 55555444443333333334444444444444332222221 1234444444444444444444444555555555555
Q ss_pred CCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 408 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
.+....|..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 444444445555555555555555555444444555555555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-41 Score=349.33 Aligned_cols=420 Identities=21% Similarity=0.211 Sum_probs=329.5
Q ss_pred HHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCC
Q 011688 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130 (479)
Q Consensus 51 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 130 (479)
.+...+++|++|++++|++.+..+. ..+++|++|++++| .+....+..++.+++|++|++++|. +....|..++++
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l 187 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNL 187 (968)
T ss_pred HHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc-ccccCChhhhhC
Confidence 3444688999999999988754433 56899999999995 5666677889999999999999997 456778899999
Q ss_pred CCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEE
Q 011688 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (479)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (479)
++|++|++++|......+..+.++++|++|+++++. +....+..+.++++|+.|++++|.+.+..+..++++++|+.|+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 999999999987766778889999999999999854 5555667789999999999999998877788899999999999
Q ss_pred ecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccCh
Q 011688 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290 (479)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (479)
+++|.+....|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+..
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 99998887778889999999999999999888778888899999999999998887777888999999999999999887
Q ss_pred hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhc
Q 011688 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+++..+..+..
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 77788888999999999988776555555555666666666666655544455555666666666666555444444455
Q ss_pred CCCCcEEEecCCCCCchhHHhhhh-----------------------cCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeee
Q 011688 371 FKNLRSLEICGGGLTDAGVKHIKD-----------------------LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~l~~-----------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 427 (479)
++.|+.|++++|.+.+..+..+.. .++|+.|++++| .+....|..+..+++|+.|+
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~ 505 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLK 505 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC-ccCCccChhhhhhhccCEEE
Confidence 555555555555444433332222 356666777776 66666777788888889999
Q ss_pred cCCCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCCCccccCC
Q 011688 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 428 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
+++|.+....|..+..+++|++|++++|+++......+. .+++|+.|++
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L 554 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLDL 554 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh--CcccCCEEEC
Confidence 998888877777888888999999999988765444443 6677777665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=277.91 Aligned_cols=392 Identities=24% Similarity=0.283 Sum_probs=316.6
Q ss_pred CeeEEEeeCCCCCcchhhcccCC--CCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 58 SLLSVDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.-+.|+.++..+....+..+..+ +.-+.|++++ +++.+..+..|.++++|+.+++..|.. ..+|...+...+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccc-cccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence 35666777776665555544433 3456688888 678888888888888888888888863 455665556667888
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|++.+|.+.....+++..++.||.|+++. +.++......+..-.++++|++++|.++......|..+.+|.+|.++.|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 88888766666667778888888998887 55666666666666788999999998888888888888888889999988
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
++...+..|.++++|+.|++..|.+.....-.|.++++|+.|.+..|++.......|..+.+++.|++..|++....-.+
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 88887888888899999999888877665566788888999988888776555556778888999999988887766677
Q ss_pred hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc
Q 011688 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
+.++..|+.|++++|.+.......+.-+++|++|+++.|.++......|..+..|++|.+++|.+..+....|..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 78889999999999988887777778889999999999988888888888888999999999999888888888889999
Q ss_pred EEEecCCCCCch---hHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecc
Q 011688 376 SLEICGGGLTDA---GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452 (479)
Q Consensus 376 ~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 452 (479)
+|+++.|.+... ....|..+++|+.|.+.+| ++..+...+|.+++.|++|++.+|.+..+.+++|..+ .|++|-+
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 999999876542 3456777899999999999 8998888899999999999999999999889999888 8888877
Q ss_pred ccc
Q 011688 453 ESC 455 (479)
Q Consensus 453 ~~~ 455 (479)
..-
T Consensus 447 nSs 449 (873)
T KOG4194|consen 447 NSS 449 (873)
T ss_pred ccc
Confidence 543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-36 Score=266.90 Aligned_cols=377 Identities=23% Similarity=0.246 Sum_probs=327.3
Q ss_pred HHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHH
Q 011688 48 WMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAF 127 (479)
Q Consensus 48 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 127 (479)
|.......++..++|++++|.+.......|.++++|+.+.+.. +.++.+ |.......+|+.|+|.+|- ++....+.+
T Consensus 69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~I-P~f~~~sghl~~L~L~~N~-I~sv~se~L 145 (873)
T KOG4194|consen 69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRI-PRFGHESGHLEKLDLRHNL-ISSVTSEEL 145 (873)
T ss_pred ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhc-ccccccccceeEEeeeccc-cccccHHHH
Confidence 3333333467789999999999988888899999999999998 445432 3333345679999999987 567778889
Q ss_pred hCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCC
Q 011688 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207 (479)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 207 (479)
+.++.||.||++.|.........|..-.++++|++++ +.++......|.++.+|..|.++.|.++...+..|.++++|+
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 9999999999999766666667787788999999998 668888888999999999999999999999899999999999
Q ss_pred EEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcc
Q 011688 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287 (479)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 287 (479)
.|++..|++...-...|..+++|+.|.+..|.+.......|..+.++++|++..|++......++.++++|+.|+++.|.
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 99999998765545578899999999999999988777889999999999999998887777788899999999999999
Q ss_pred cChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch---hH
Q 011688 288 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD---SG 364 (479)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~ 364 (479)
+....+..+..+++|+.|++++|.++......+..+..|++|.++.|.+......+|..+++|++|+++.|.++- ..
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 988888888889999999999999998888888889999999999999988877788889999999999998763 34
Q ss_pred HHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCC
Q 011688 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 430 (479)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 430 (479)
...+.++++|++|++.+|++....-.+|..+++|++|+|.+| .+..+.+.+|..+ .|++|.+..
T Consensus 385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 556778999999999999999888889999999999999999 7888899999988 888888754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-28 Score=223.00 Aligned_cols=345 Identities=21% Similarity=0.231 Sum_probs=163.1
Q ss_pred HHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCC
Q 011688 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL 179 (479)
Q Consensus 100 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 179 (479)
.....++.++.|.|..... ...|+.++.+.+|++|.+.+| .+......+..++.||.+.++.++.-....+..+..+
T Consensus 26 ~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred hhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 3334444444444444332 333444444444444444442 2222333344444555544444332222223344445
Q ss_pred CCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEec
Q 011688 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
..|..|+++.|++.. .|..+...+++-.|+++++.+..+.-..+.++..|-.|++++|.+...+ +.+..+.+|++|.+
T Consensus 103 ~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP-PQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP-PQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC-HHHHHHhhhhhhhc
Confidence 555555555554442 2333444445555555555554443334444555555555555544332 22344555555555
Q ss_pred cCCCCChHHHHHHhcCCCCCEEeccCcccC-hhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCH
Q 011688 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
++|.+.......+..+++|+.|.+++.+-+ ...+..+..+.+|..++++.|.++. .+..+..+++|+.|++++|.++.
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceee
Confidence 555433333333334445555555543321 1223344445555555555555443 34444455556666666555544
Q ss_pred HHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCch-hHHhhhhcCCCCEEEcCCCCCCCHHHHHHH
Q 011688 339 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417 (479)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 417 (479)
... ......+|++|+++.|+++.. |..+..++.|+.|.+.+|+++-. .|.+++.+..|+++..++| .+ ...|+.+
T Consensus 260 L~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~L-ElVPEgl 335 (1255)
T KOG0444|consen 260 LNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KL-ELVPEGL 335 (1255)
T ss_pred eec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-cc-ccCchhh
Confidence 321 112334555666666655544 33444555555555555554321 2345555555665555555 22 2355555
Q ss_pred hcCCCCCeeecCCCccCHHHHHcccCCCccceeccccc
Q 011688 418 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 418 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 455 (479)
+.|+.|+.|.++.|.+... |.++.-++.|+.|++..|
T Consensus 336 cRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCC
Confidence 5666666666665555442 345555555666666555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.9e-28 Score=217.86 Aligned_cols=345 Identities=23% Similarity=0.268 Sum_probs=286.3
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcE
Q 011688 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (479)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 184 (479)
+|-.|-.++++++.-.+..|..+.+|++++.|.+.. +.+...|..++.+.+|++|.+.++...+ ..+.++.++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHH
Confidence 455677788888755577889999999999999988 6788899999999999999999855433 3466788999999
Q ss_pred EEcccCCCChHH-HHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCC
Q 011688 185 LQISCSKVTDSG-IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263 (479)
Q Consensus 185 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (479)
+.+..|++...+ |..+-.+..|+.|+++++++... |..+....++-.|++++|.+..++...|.++..|-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999988776543 55677899999999999988764 8889899999999999999998877888889999999999998
Q ss_pred CChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCC-hHHHHHhhCCCCCcEEecCCCCCCHHHHH
Q 011688 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLA 342 (479)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (479)
+... |..+..+..|++|.+++|.+.......+.++++|+.|.+++..-+ ...+..+..+.+|..++++.|.+...+ +
T Consensus 162 Le~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-e 239 (1255)
T KOG0444|consen 162 LEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-E 239 (1255)
T ss_pred hhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-H
Confidence 7543 444778899999999999887777777788888999999887433 335566777899999999999887664 6
Q ss_pred HHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCH-HHHHHHhcCC
Q 011688 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLT 421 (479)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~ 421 (479)
.+.++++|++|++++|+++.... ..+.+.+|++|+++.|+++.. |.++..++.|+.|.+.+| .+.- -+|..++++.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccC-cccccCCccchhhhh
Confidence 67789999999999999987643 335567999999999999865 788889999999999998 4433 3788899999
Q ss_pred CCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
.|+.+...+|.+.- .|.+++.|..|+.|.+++|++..
T Consensus 317 ~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 317 QLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred hhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee
Confidence 99999999987665 57899999999999999996543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=6.8e-27 Score=220.27 Aligned_cols=382 Identities=23% Similarity=0.244 Sum_probs=249.9
Q ss_pred eeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEc
Q 011688 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
|++|+++++.+.. .+..+...++|+.|.++. +.+.. .+...+++.+|+++.|.++.. ...|..+..+.+|+.|++
T Consensus 47 L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~-n~i~~-vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS-FPIQITLLSHLRQLNLSR-NYIRS-VPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeecccccccc-CCchhhhHHHHhhcccch-hhHhh-Cchhhhhhhcchhheeccchh--hcCchhHHhhhccccccc
Confidence 8888998887653 344567778888888887 44443 356777888899999988864 667888888899999999
Q ss_pred cCccccccccccccCCCCCcEEeccCC------------------CCCCccccccccCCCCCcEEEcccCCCChHHHHHh
Q 011688 139 ERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 200 (479)
++|. +...|..+..+..++.+..+++ +.+.+.....+..+++ .+++.+|.+.......+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhc
Confidence 8854 3333333333333333333321 1122222223333333 46666665542211111
Q ss_pred hc-----------------CCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCC
Q 011688 201 KG-----------------LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263 (479)
Q Consensus 201 ~~-----------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (479)
.. -++++.|...+|.+... ..-....+|++++++++.+.... +++..+.+|+.+....|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~--~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL--DVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceee--ccccccccceeeecchhhhhcch-HHHHhcccceEecccchh
Confidence 11 12333333334433311 01112346677777777666544 666777777777777776
Q ss_pred CChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHh-----------------------
Q 011688 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL----------------------- 320 (479)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----------------------- 320 (479)
+. ..+..+....+|+.+.+..|.+. ..+....+..+|++|++..|.+.......+
T Consensus 276 l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 LV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 63 33333445566666666666552 233344557788888888876553221111
Q ss_pred --hCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCC
Q 011688 321 --AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 321 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 398 (479)
..++.|+.|++.+|.+++.....+-+.++|+.|.+++|.+...+...+.+++.|+.|.++||.++.. +..++.++.|
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L 432 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRL 432 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhh
Confidence 1235688888888888887777777889999999999999888888889999999999999999876 5778889999
Q ss_pred CEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceeccccccc
Q 011688 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 457 (479)
++|...+| .+.. .| .+.+++.|+.+|++.|+++..........++|++|+++||.-
T Consensus 433 ~tL~ahsN-~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSN-QLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCC-ceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 99999988 6665 45 678899999999999998886654444448999999999963
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=5.7e-28 Score=206.77 Aligned_cols=393 Identities=21% Similarity=0.213 Sum_probs=208.3
Q ss_pred eeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEc
Q 011688 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
++.+.+++|.+.. ....+.++..|.+|++.++ ++.. .+.+++.+..++.++.+.+.. ..+|+.++.+.+|..+++
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n-~l~~-lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDN-KLSQ-LPAAIGELEALKSLNVSHNKL--SELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccc-hhhh-CCHHHHHHHHHHHhhcccchH--hhccHHHhhhhhhhhhhc
Confidence 4555555555432 2233455555555555552 2222 244444455555555555542 344555555555555555
Q ss_pred cCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHH----------------------
Q 011688 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG---------------------- 196 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------- 196 (479)
+++ .....+..++.+..|+.++..+++ +.. .+..+.++.++..+.+.++.+....
T Consensus 122 s~n-~~~el~~~i~~~~~l~dl~~~~N~-i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 122 SSN-ELKELPDSIGRLLDLEDLDATNNQ-ISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccc-ceeecCchHHHHhhhhhhhccccc-ccc-CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcC
Confidence 552 233344444455555555544422 221 2333444444444444444444333
Q ss_pred HHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCC
Q 011688 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLC 276 (479)
Q Consensus 197 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (479)
|..++.+.+|..|++..+.+... | .|..+..|+++....|.+.-...+...+++++..|++++|++.. .|..++-+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhh
Confidence 33344444444444444444332 2 44445555555555554444333444456666777777766543 334455566
Q ss_pred CCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHH-----------Hh-------------------------
Q 011688 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-----------KL------------------------- 320 (479)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----------~l------------------------- 320 (479)
+|.+|++++|.++.. +..++++ +|+.|.+.+|.+...-.. .+
T Consensus 276 sL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~ 353 (565)
T KOG0472|consen 276 SLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE 353 (565)
T ss_pred hhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence 677777777666432 3345555 666666666644321100 00
Q ss_pred -----hCCCCCcEEecCCCCCCHHHHHHHh--cCCCCCEEEcCCCccchh-----------------------HHHhhhc
Q 011688 321 -----AGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDS-----------------------GAAYLRN 370 (479)
Q Consensus 321 -----~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-----------------------~~~~~~~ 370 (479)
....+.+.|.+++-+++..+.+.|. .-.-.+..++++|++... .+..+..
T Consensus 354 ~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 354 SFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred cccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 0112344555555444443333332 111244555555544322 1233455
Q ss_pred CCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC----------------------CCCCHHHHHHHhcCCCCCeeec
Q 011688 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------------CNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~----------------------~~~~~~~~~~l~~~~~L~~L~l 428 (479)
+++|..|++++|.+.+. |..+..+-.|+.|+++.| .++....++.+.++.+|.+|++
T Consensus 434 l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 67777777777766554 444555666777777776 1344444555778889999999
Q ss_pred CCCccCHHHHHcccCCCccceecccccccCHHHHHHHH
Q 011688 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 429 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (479)
.+|.+..+ |..+.++++|++|+++||++.-+.-+.+.
T Consensus 513 ~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr~Pr~~iLm 549 (565)
T KOG0472|consen 513 QNNDLQQI-PPILGNMTNLRHLELDGNPFRQPRHQILM 549 (565)
T ss_pred CCCchhhC-ChhhccccceeEEEecCCccCCCHHHHhc
Confidence 99988885 45889999999999999998866555444
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=7.4e-22 Score=206.51 Aligned_cols=357 Identities=22% Similarity=0.197 Sum_probs=209.2
Q ss_pred CeeEEEeeCCCCCc--chhhcccCCCCCCEEecCCCC-----CCChhHHHHhhCC-CCCcEEEcCCCCcccHHHHHHHhC
Q 011688 58 SLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAG 129 (479)
Q Consensus 58 ~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 129 (479)
.++.+.+.-..+.. .....|..+++|+.|.+.... .+....+..+..+ ++|+.|.+.+++. ...|..+ .
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~ 609 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-R 609 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-C
Confidence 44555444333321 222347777888887775421 1111123334444 3577887777653 3344444 4
Q ss_pred CCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEE
Q 011688 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (479)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 209 (479)
..+|++|++.++. +...+..+..+++|+.|+++++..+... ..+..+++|+.|++.+|......+..+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 5777888887753 4445555667778888888776555433 236667778888877765444455666777778888
Q ss_pred EecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccC
Q 011688 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 289 (479)
Q Consensus 210 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 289 (479)
++++|......|..+ .+++|+.|++++|......+. ...+|+.|+++++.+... +..+ .+++|++|.+.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchh
Confidence 887765433334333 567777887777754333222 235677777777755322 2111 4566676666553211
Q ss_pred h-------hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch
Q 011688 290 S-------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 290 ~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (479)
. ..+.....+++|+.|++++|......+..++++++|+.|++++|......+... .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0 111112234677777777775544456667777788888887764332222222 56777788887774432
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCc
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 432 (479)
..+. ..++|+.|++++|.++.. |..+..+++|+.|++++|.++.. ++.....+++|+.+++++|.
T Consensus 840 ~~p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 840 TFPD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 2221 235777788887777654 55667777888888887766665 44445667777777777773
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=8.8e-25 Score=206.18 Aligned_cols=408 Identities=21% Similarity=0.183 Sum_probs=244.0
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
++..+.++....... .-.+ ...++|+.|+++.|.+... +....++.+|+.|.|.++ .....+..+..+.+|.+|
T Consensus 46 ~L~~l~lsnn~~~~f--p~~i-t~l~~L~~ln~s~n~i~~v-p~s~~~~~~l~~lnL~~n--~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSF--PIQI-TLLSHLRQLNLSRNYIRSV-PSSCSNMRNLQYLNLKNN--RLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeeccccccccC--Cchh-hhHHHHhhcccchhhHhhC-chhhhhhhcchhheeccc--hhhcCchhHHhhhccccc
Confidence 456666655432221 1111 1245577788887766533 345667777888877762 233446677777778888
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCc-------------------cccccccccccCCCCCcEEeccCCCCCCccc
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERC-------------------TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (479)
+++.+.. ...|..+..+..++.+..++| ......+..+..+.. .|+++++. +....
T Consensus 120 dlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~~~d 194 (1081)
T KOG0618|consen 120 DLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-MEVLD 194 (1081)
T ss_pred ccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccch-hhhhh
Confidence 8877753 222333333333333333322 111111111111111 24444422 11100
Q ss_pred cccc-----------------cCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEc
Q 011688 173 MKPL-----------------SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (479)
Q Consensus 173 ~~~~-----------------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 235 (479)
.... ..-++++.|+...|.+..... -..-.+|++++++.+.+... |.++..+.+|+.+.+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNA 271 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcc-hHHHHhcccceEecc
Confidence 0000 011334444444444332111 11224667777777666554 467777777777777
Q ss_pred cCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh--------------------
Q 011688 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-------------------- 295 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------- 295 (479)
.+|.+... +..+....+|+.+.+..|++.... .....++.|+.|++..|.+.......
T Consensus 272 n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 272 NHNRLVAL-PLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 77666332 233333444555555444332211 11223445555555544432211110
Q ss_pred -----hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhc
Q 011688 296 -----LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 296 -----~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
-...+.|+.|++.+|.+++.....+..+++|+.|++++|.+...+...+.+++.|+.|+++||+++.++ ..+..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~ 428 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVAN 428 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHh
Confidence 023456888899999999999999999999999999999998888788889999999999999999875 67788
Q ss_pred CCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCcccee
Q 011688 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 450 (479)
++.|++|...+|.+... | .+..++.|+.++++.| +++..........|+|++|+++||.-.......|..+..+..+
T Consensus 429 ~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQM 505 (1081)
T ss_pred hhhhHHHhhcCCceeec-h-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhe
Confidence 99999999999998765 4 7888999999999999 7777655544455899999999997555555666667777777
Q ss_pred cccccccCH
Q 011688 451 TLESCKVTA 459 (479)
Q Consensus 451 ~l~~~~~~~ 459 (479)
++.-++..+
T Consensus 506 ~i~~~~~~d 514 (1081)
T KOG0618|consen 506 DITLNNTPD 514 (1081)
T ss_pred ecccCCCCc
Confidence 666654443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2.2e-25 Score=191.11 Aligned_cols=364 Identities=23% Similarity=0.240 Sum_probs=247.1
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
..+++.++.+++... ..+..+.++..+..++-.++ .+.. .++.+..+.+|..+++.++.. ....+..+ +|+.|++
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N-~i~s-lp~~~~~~~~l~~l~~~~n~l-~~l~~~~i-~m~~L~~ 187 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNN-QISS-LPEDMVNLSKLSKLDLEGNKL-KALPENHI-AMKRLKH 187 (565)
T ss_pred hhhhhhhhcccccee-ecCchHHHHhhhhhhhcccc-cccc-CchHHHHHHHHHHhhccccch-hhCCHHHH-HHHHHHh
Confidence 566888888888765 34456778888888887763 4443 356666777777888887763 33333333 4788888
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|+... ...+..|+.++.+.+|+.|+++. +.+... ..|.+|..|+++++..|.+..........++++..|++.+++
T Consensus 188 ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 188 LDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred cccch-hhhhcCChhhcchhhhHHHHhhh-cccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc
Confidence 88776 35667777778888888888877 434422 267777777777777777766555556677777777887777
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHH-----------HHH-------------
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG-----------LVN------------- 271 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------~~~------------- 271 (479)
+... |+.+..+++|++|++++|.++... ..++++ +|+.|.+.||.+...- ...
T Consensus 264 lke~-Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 LKEV-PDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred cccC-chHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 6654 666777777777777777766543 445555 6666666666332110 000
Q ss_pred -----------------HhcCCCCCEEeccCcccChhhhHhhcCC--CCCCEEEccCCCCC-------------------
Q 011688 272 -----------------LTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGIS------------------- 313 (479)
Q Consensus 272 -----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~------------------- 313 (479)
.....+.+.|++++-+.+....+.|... .-+..++++.|++.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 0111234455555555544444444221 12445555555432
Q ss_pred ----hHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhH
Q 011688 314 ----DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 389 (479)
Q Consensus 314 ----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 389 (479)
+..+..+..+++|..|++++|.+.+.+.+ ++.+..|+.|+++.|.+... |.++.....++.+-.++|++....+
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccccccccCh
Confidence 22344566789999999999877776544 45677799999999988765 4455556678888888899998888
Q ss_pred HhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 390 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 390 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
..+..+.+|..|++.+| .+.. +|..+++|++|++|.+.+|+|..
T Consensus 499 ~~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HHhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCccCC
Confidence 88999999999999999 6665 67788999999999999999984
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.8e-21 Score=200.44 Aligned_cols=342 Identities=19% Similarity=0.181 Sum_probs=245.2
Q ss_pred HHHHhhCCCCCcEEEcCCCC-----cccHHHHHHHhCCC-CCcEEEccCccccccccccccCCCCCcEEeccCCCCCCcc
Q 011688 98 GLEHLRGLSNLTSLSFRRNN-----AITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171 (479)
Q Consensus 98 ~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (479)
....|..+++|+.|.+.... ......|..+..++ +|+.|.+.++ .....|..+ ...+|++|++.++. +..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~~- 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LEK- 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-ccc-
Confidence 35678899999999986542 11223455666654 6999999885 345556555 46899999999844 443
Q ss_pred ccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCC
Q 011688 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRL 251 (479)
Q Consensus 172 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (479)
.+..+..+++|+.++++++......+ .+..+++|++|++.+|......|..+..+++|+.|++++|......+..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 34556789999999998764332222 46788999999999997766778889999999999999986544444433 68
Q ss_pred CCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCCh-------HHHHHhhCCC
Q 011688 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-------GSLRKLAGLS 324 (479)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~ 324 (479)
++|+.|++++|......+. ..++|+.|++.++.+... +.. ..+++|+.|.+.++.... ..+.....++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 8999999999843222221 246899999999886432 222 247888888887643211 1111223357
Q ss_pred CCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcC
Q 011688 325 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404 (479)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 404 (479)
+|+.|++++|......+..++++++|+.|++++|......+... .+++|+.|++++|......+. ...+|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 99999999987666566778899999999999985433333333 688999999999865433222 24689999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccc
Q 011688 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+| .+.. +|.++..+++|+.|++++|+-....+..+..+++|+.+++++|+
T Consensus 855 ~n-~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RT-GIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CC-CCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99 7775 67888999999999999984333344556778899999999993
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=1.2e-18 Score=159.30 Aligned_cols=255 Identities=28% Similarity=0.369 Sum_probs=124.5
Q ss_pred hcCCCCCEEEecCCCCCHH----HHHHhhCCCCCcEEEccCCCCCc------hhhHhhhCCCCCCEEeccCCCCChHHHH
Q 011688 201 KGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSD------DGCEKFSRLTNLESLNLDSCGIGDEGLV 270 (479)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (479)
..+..|+.++++++.+... .+..+...+.+++++++++.+.. ..+..+..+++|+.|+++++.+......
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3334455555555544322 12223334445555555444331 1123344455566666655554433333
Q ss_pred HHhcCC---CCCEEeccCcccChhhh----HhhcCC-CCCCEEEccCCCCChH----HHHHhhCCCCCcEEecCCCCCCH
Q 011688 271 NLTGLC---NLKCLELSDTQVGSSGL----RHLSGL-TNLESINLSFTGISDG----SLRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 271 ~~~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
.+..+. +|+.|++++|.+..... ..+..+ ++|+.|++++|.++.. ....+..+++|++|++++|.+.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 333222 25566665555542221 122334 5666666666655522 12233445566666666666553
Q ss_pred HHH----HHHhcCCCCCEEEcCCCccchhHHH----hhhcCCCCcEEEecCCCCCchhHHhhhh-----cCCCCEEEcCC
Q 011688 339 TGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQ 405 (479)
Q Consensus 339 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~ 405 (479)
... ..+...++|+.|++++|.+...... .+..+++|+.|++++|.+.+.....+.. .+.|++|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 222 2233445666666666665543322 2344566666666666666543333321 25666777766
Q ss_pred CCCCCHH----HHHHHhcCCCCCeeecCCCccCHHHH----HcccCC-Cccceecccccc
Q 011688 406 NCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLKPL-KNLRSLTLESCK 456 (479)
Q Consensus 406 ~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~ 456 (479)
| .+++. ....+..+++|+.+++++|.+...+. ..+... +.|+++++.+++
T Consensus 260 n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 260 N-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 6 55421 22334445666667776666665433 222233 566666666665
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=9.2e-18 Score=153.41 Aligned_cols=257 Identities=28% Similarity=0.382 Sum_probs=168.2
Q ss_pred ccCCCCCcEEEcccCCCChHH----HHHhhcCCCCCEEEecCCCCC------HHHHHHhhCCCCCcEEEccCCCCCchhh
Q 011688 176 LSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGC 245 (479)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 245 (479)
+..+++|+.+.+.++.++... ...+...+.+++++++++.+. ...+..+..+++|+.|+++++.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344555677777666664432 223345566777777766554 2234456667788888887777765444
Q ss_pred HhhhCCC---CCCEEeccCCCCChHHH----HHHhcC-CCCCEEeccCcccChhh----hHhhcCCCCCCEEEccCCCCC
Q 011688 246 EKFSRLT---NLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGIS 313 (479)
Q Consensus 246 ~~~~~~~---~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 313 (479)
..+..+. +|+.|++++|.+.+... ..+..+ ++|+.+++.+|.++... ...+..+++|++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4443333 38888888887664222 234455 78888888888776322 334566778888888888877
Q ss_pred hHHH----HHhhCCCCCcEEecCCCCCCHHHHH----HHhcCCCCCEEEcCCCccchhHHHhh-hc----CCCCcEEEec
Q 011688 314 DGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-RN----FKNLRSLEIC 380 (479)
Q Consensus 314 ~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~-~~----~~~L~~L~l~ 380 (479)
+... ..+..+++|++|++++|.+.+.... .+..+++|++|++++|.++......+ .. .+.|+.|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 5333 3344567899999998888755433 34467889999999998876444333 22 3789999999
Q ss_pred CCCCCchhH----HhhhhcCCCCEEEcCCCCCCCHHHH----HHHhcC-CCCCeeecCCCcc
Q 011688 381 GGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----ELISGL-TGLVSLNVSNSRI 433 (479)
Q Consensus 381 ~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~ 433 (479)
+|.+++... ..+..+++|+++++++| .+..... ..+... +.|+++++.++++
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 998874333 34455688999999999 7776533 334444 6899999988764
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=3.8e-21 Score=164.91 Aligned_cols=137 Identities=25% Similarity=0.233 Sum_probs=110.9
Q ss_pred HhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCC
Q 011688 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
..-.+..+.|.|..|.|+......|..+++||+|||++ +.|+.+.+++|..++.|-.|.+-+++.+++..-..|+.+..
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 33466788999999999999999999999999999999 68999999999999999888877755577777788899999
Q ss_pred CcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC
Q 011688 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 191 (479)
|+.|.+.-|...-.....|..+++|..|.+.+ +.+..+....+..+..++.+.+..+.
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCc
Confidence 99998887666656667788889999998887 44544444567777777777776554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=8.4e-20 Score=156.75 Aligned_cols=275 Identities=22% Similarity=0.202 Sum_probs=160.5
Q ss_pred CCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecC-CCCCHHHHHHhhCCCCCcEEE
Q 011688 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLN 234 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 234 (479)
.-..+++.. +.++.++..+|..+++|++|+++.|.++.+.+.+|..++++.+|-+.+ +++.......|..+.+++.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 445666666 556767777777777777777777777777777777777776665555 677766666777777777777
Q ss_pred ccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChh------------hhHhhcCCCCC
Q 011688 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS------------GLRHLSGLTNL 302 (479)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~~~~~~L 302 (479)
+.-+++.....+.|..++++..|.+.++.+.......|..+..++.+.+..|.+... .+..++++...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 777776666666777777777777777655433333455566666666655442110 00111111111
Q ss_pred CEEEccCCCCChHHHHHhhC-CCCCcEEecCCCC-CCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEec
Q 011688 303 ESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (479)
.-..+.+..+.......+.. ...+.+=..+.+. ....+...|..+++|++|++++|+++.+....|.+...++.|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111111111111111110 0111111111121 122233445667777777777777777666667667777777777
Q ss_pred CCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCc
Q 011688 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 381 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 432 (479)
.|++..+....|.++..|+.|+|++| +++...|..|..+.+|.+|++-.|+
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCc
Confidence 77776666666667777777777777 6666666667667777777776554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.1e-15 Score=146.10 Aligned_cols=265 Identities=20% Similarity=0.114 Sum_probs=165.6
Q ss_pred CCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEE
Q 011688 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (479)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (479)
..-..|+++++ .+...|..+. ++|+.|++.+ +.++..+. ..++|++|++++|.++... . ..++|+.|+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPD-NNLTSLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccC-CcCCCCCC----CCCCCcEEEecCCccCccc-C---cccccceee
Confidence 34556777775 3344555443 4677777776 34443221 2467888888877776432 1 235777788
Q ss_pred ecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccCh
Q 011688 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290 (479)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (479)
+.+|.+... +. ...+|+.|++++|.+..... ..++|+.|++++|.+..... ...+|+.|++.+|.+..
T Consensus 269 Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhh-hh---chhhcCEEECcCCccccccc----cccccceeECCCCccccCCC----CcccccccccccCcccc
Confidence 877766543 32 12467778887777664321 24678888888876654211 12357777777777643
Q ss_pred hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhc
Q 011688 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
.. . ...+|+.|++++|.+..... ..++|+.|++++|.+...+. ...+|+.|++++|.++..+. .
T Consensus 337 LP-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~----l 400 (788)
T PRK15387 337 LP-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPV----L 400 (788)
T ss_pred cc-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCCC----c
Confidence 21 1 12467888888887764221 13567778888777665321 13568888888887775432 1
Q ss_pred CCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcc
Q 011688 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 441 (479)
.++|+.|++++|.+... +.. ..+|+.|++++| .++. +|..+.++++|+.|++++|++....+..+
T Consensus 401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 35788888888887654 222 246778888887 6764 56677788888888888888877666554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.9e-15 Score=143.67 Aligned_cols=265 Identities=22% Similarity=0.150 Sum_probs=194.5
Q ss_pred CCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEE
Q 011688 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (479)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (479)
.+-..|+++++ .++.. +..+. ++|+.|.+.+|.++... ..+++|++|++++|.+... |. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~-~LtsL-P~~l~--~~L~~L~L~~N~Lt~LP----~lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTTL-PDCLP--AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCcC-Ccchh--cCCCEEEccCCcCCCCC----CCCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 45678888884 45543 33333 47999999999887532 1357999999999988754 32 246899999
Q ss_pred ccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCCh
Q 011688 235 LNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 314 (479)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 314 (479)
+.+|.+.... . ..++|+.|++++|++..... ..++|+.|++++|.+.... . ...+|+.|++.+|.++.
T Consensus 269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhhh-h---chhhcCEEECcCCccccccc----cccccceeECCCCccccCC-C---CcccccccccccCcccc
Confidence 9999876532 2 23578999999998764321 3478999999999886432 1 13468889999988764
Q ss_pred HHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhh
Q 011688 315 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 394 (479)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 394 (479)
.. .+ .++|++|++++|.+...+. ..++|+.|++++|.+...+. ...+|+.|++++|.+.... . .
T Consensus 337 LP--~l--p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP-~---l 400 (788)
T PRK15387 337 LP--TL--PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-V---L 400 (788)
T ss_pred cc--cc--ccccceEecCCCccCCCCC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCC-C---c
Confidence 22 11 2589999999999876432 23678899999998886432 2358999999999988643 2 2
Q ss_pred cCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHH
Q 011688 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 465 (479)
.++|+.|++++| .+.. +|.. ..+|+.|++++|+++.+ |..+..+++|+.|++++|+++......+
T Consensus 401 ~s~L~~LdLS~N-~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGN-RLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCC-cCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 368999999999 6776 3432 34688999999999875 5678889999999999999998766554
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=124.05 Aligned_cols=87 Identities=31% Similarity=0.472 Sum_probs=46.6
Q ss_pred CCCeeEEEeeCCC-CCcchhhcc-cCCCCCCEEecCCCCCCChhHHHHhh-CCCCCcEEEcCCCCcccHHHHHHHh-CCC
Q 011688 56 GSSLLSVDLSGSD-VTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLI 131 (479)
Q Consensus 56 ~~~l~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~-~l~ 131 (479)
...++.|++.++. +.+.....+ .+||+++.|.+.+|.++++.....++ .|++|++|++..|..+++.....++ .|+
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 3456666666643 333333332 45666666666666666665555554 4666666666666555555555333 344
Q ss_pred CCcEEEccCcc
Q 011688 132 NLVKLDLERCT 142 (479)
Q Consensus 132 ~L~~L~l~~~~ 142 (479)
+|++++++-|.
T Consensus 217 kL~~lNlSwc~ 227 (483)
T KOG4341|consen 217 KLKYLNLSWCP 227 (483)
T ss_pred hHHHhhhccCc
Confidence 44444444443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1e-13 Score=136.48 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=93.7
Q ss_pred CCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEc
Q 011688 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 235 (479)
+...|++++ ..++..+ ..+ .++++.|++++|.++.... .+ .++|+.|++++|.+... |..+. ++|+.|++
T Consensus 179 ~~~~L~L~~-~~LtsLP-~~I--p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKI-LGLTTIP-ACI--PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCC-CCcCcCC-ccc--ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 456666665 2333222 112 2467777777776664322 22 14677777777665543 33322 35666777
Q ss_pred cCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChH
Q 011688 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 315 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 315 (479)
++|.+... +..+ ..+|+.|++++|.+... +..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.+...
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence 66665533 2222 13566666666655422 2111 135666666665554221 111 12455555555544421
Q ss_pred HHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCc
Q 011688 316 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
. ..+ .++|++|.+++|.+...+ ..+ .++|+.|++++|++...+. .+ .++|+.|++++|.+..
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTN 381 (754)
T ss_pred C-ccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCC
Confidence 1 111 244555555555444322 111 1345555555554443221 11 1345555555554443
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=3.7e-13 Score=114.66 Aligned_cols=193 Identities=23% Similarity=0.307 Sum_probs=112.0
Q ss_pred hcCCCCCEEeccCcccChhhhHhh----cCCCCCCEEEccCCCCChHHHHH-------------hhCCCCCcEEecCCCC
Q 011688 273 TGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQ 335 (479)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~ 335 (479)
..+|+|+++++++|.+....+..+ .++..|++|.+.+|.+....-.. .+.-+.|+++....|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 344566666666665554444332 45666666666666554332222 2234677777777766
Q ss_pred CCHHH----HHHHhcCCCCCEEEcCCCccchhH----HHhhhcCCCCcEEEecCCCCCchhHH----hhhhcCCCCEEEc
Q 011688 336 ITDTG----LAALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNL 403 (479)
Q Consensus 336 ~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l 403 (479)
+.+.+ ...++..+.|+.+.+..|.+...+ ...+..|++|+.|++.+|-++..+.. .+...+.|+++++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 65433 233455667777777777654332 23456777777777777776654332 3344567777777
Q ss_pred CCCCCCCHHHHH----HHh-cCCCCCeeecCCCccCHHHH----HcccCCCccceeccccccc--CHHHHHHHH
Q 011688 404 SQNCNLTDKTLE----LIS-GLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKV--TANDIKRLQ 466 (479)
Q Consensus 404 ~~~~~~~~~~~~----~l~-~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~--~~~~~~~l~ 466 (479)
++| .+...... .+. ..|+|+.+.+.+|.++.... ..+...|.|..|++++|.+ .+..+..+.
T Consensus 249 ~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 249 GDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred ccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 777 55544332 222 36777777777777665333 2234467788888888877 444454443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=119.81 Aligned_cols=297 Identities=30% Similarity=0.449 Sum_probs=140.9
Q ss_pred CCCcEEeccCCCCCCccccccc-cCCCCCcEEEcccC-CCChHHHHHh-hcCCCCCEEEecCC-CCCHHHHHHh-hCCCC
Q 011688 155 MKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSL-SALGS 229 (479)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~l-~~~~~ 229 (479)
..|+.|.+++|..........+ .++++++.|.+.++ .+++.....+ ..+++|+++++..| .++......+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3577777777776665555433 46777777777666 3444433333 45677787777775 3444333322 34677
Q ss_pred CcEEEccCCCC-Cchhh-HhhhCCCCCCEEeccCC-CCChHHHHHH-hcCCCCCEEeccCcc-cChhhhH-hhcCCCCCC
Q 011688 230 LFYLNLNRCQL-SDDGC-EKFSRLTNLESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQ-VGSSGLR-HLSGLTNLE 303 (479)
Q Consensus 230 L~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~ 303 (479)
|+++++++|.. .+... ....++..++.+...|| +......... ..++.+.++++..+. +++.... .-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777777642 22111 22334555666655555 2222221111 233444444443332 2222211 113344555
Q ss_pred EEEccCC-CCChHHHHHhh-CCCCCcEEecCCCC-CCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEec
Q 011688 304 SINLSFT-GISDGSLRKLA-GLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380 (479)
Q Consensus 304 ~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (479)
.++.+++ .+++.....++ ++++|+.+.+.+|+ +++.....++ .+++.|+.+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-----------------------rn~~~Le~l~~e 354 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-----------------------RNCPHLERLDLE 354 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----------------------cCChhhhhhccc
Confidence 5555544 23333333332 24555555555543 2333322222 334455555554
Q ss_pred CCCCCchh-HHhh-hhcCCCCEEEcCCCCCCCHHHHHHHh----cCCCCCeeecCCCc-cCHHHHHcccCCCccceeccc
Q 011688 381 GGGLTDAG-VKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLE 453 (479)
Q Consensus 381 ~~~~~~~~-~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~ 453 (479)
++...... ...+ .+|+.|+.+.++.|..+++.....+. ++..|+.+.+++|+ +++.....+..|++|+.+++.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 44322111 1111 23455555555555444443222221 23455555555553 233333445556666666666
Q ss_pred cc-ccCHHHHHHHHhccCCCccc
Q 011688 454 SC-KVTANDIKRLQSRDLPNLVS 475 (479)
Q Consensus 454 ~~-~~~~~~~~~l~~~~~~~l~~ 475 (479)
+| .++...+..+. .++|++..
T Consensus 435 ~~q~vtk~~i~~~~-~~lp~i~v 456 (483)
T KOG4341|consen 435 DCQDVTKEAISRFA-THLPNIKV 456 (483)
T ss_pred chhhhhhhhhHHHH-hhCcccee
Confidence 66 45555555555 55665543
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=6.3e-13 Score=130.91 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=124.6
Q ss_pred CCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEe
Q 011688 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (479)
+...|+++++ .+...|..+. +.|+.|+++++ .++..+. .+ .++|+.|++++|.++.. +..+. +.|+.|++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPE-NL--QGNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCCh-hh--ccCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 4556666553 2333333332 45666666663 3443222 11 24666777766665532 22221 35666777
Q ss_pred cCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChh
Q 011688 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 291 (479)
++|.+... |..+. .+|+.|++++|.+... +..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.+...
T Consensus 249 s~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC
Confidence 66665533 33332 3566777766665532 2222 245667777666554321 111 13566666666665432
Q ss_pred hhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcC
Q 011688 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371 (479)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 371 (479)
. ..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.+...+ ..+ .++|+.|++++|.+...+.. +.
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~-l~-- 387 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN-LP-- 387 (754)
T ss_pred C-ccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh-HH--
Confidence 1 111 24666666666655542 2222 256777777766665432 222 24666777777666654332 21
Q ss_pred CCCcEEEecCCCCCchh---HHhhhhcCCCCEEEcCCCCCCC
Q 011688 372 KNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~ 410 (479)
+.|+.|++++|++.... +.....++.+..+++.+| .+.
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls 428 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN-PFS 428 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC-Ccc
Confidence 24666666666665431 112222355666666666 344
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=2.1e-12 Score=110.17 Aligned_cols=231 Identities=24% Similarity=0.320 Sum_probs=120.4
Q ss_pred ccCCCCCcEEEcccCCCChHHH----HHhhcCCCCCEEEecCC---CCCHHHHH-------HhhCCCCCcEEEccCCCCC
Q 011688 176 LSGLTNLKSLQISCSKVTDSGI----AYLKGLQKLTLLNLEGC---PVTAACLD-------SLSALGSLFYLNLNRCQLS 241 (479)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~---~~~~~~~~-------~l~~~~~L~~L~l~~~~~~ 241 (479)
...+..++.+++++|.+..... ..+++.+.|+..++++. +....+|. ++..+|+|+.+++++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3455677777777776654332 23455667777776654 22222232 3445677888888888776
Q ss_pred chhh----HhhhCCCCCCEEeccCCCCChHHHHH-------------HhcCCCCCEEeccCcccChhhh----HhhcCCC
Q 011688 242 DDGC----EKFSRLTNLESLNLDSCGIGDEGLVN-------------LTGLCNLKCLELSDTQVGSSGL----RHLSGLT 300 (479)
Q Consensus 242 ~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 300 (479)
...+ ..+.++..|++|.+.+|.+....-.. ...-++|+.+....|.+..... ..+..++
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 5543 33455677888888877665432222 1233566666666655543222 2334455
Q ss_pred CCCEEEccCCCCCh----HHHHHhhCCCCCcEEecCCCCCCHHHH----HHHhcCCCCCEEEcCCCccchhHHHhh----
Q 011688 301 NLESINLSFTGISD----GSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYL---- 368 (479)
Q Consensus 301 ~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 368 (479)
.|+.+.+..|.+.. .....+..+++|++|++..|.++..+. ..++.+++|+.|++++|.+...+...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 66666666554432 122344455666666666555544332 223344555555555555543332222
Q ss_pred -hcCCCCcEEEecCCCCCchhHHh----hhhcCCCCEEEcCCC
Q 011688 369 -RNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQN 406 (479)
Q Consensus 369 -~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~ 406 (479)
...|+|+.+.+.+|.++...... ....|.|+.|+|++|
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 23455555555555554332221 122355555555555
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=2e-14 Score=143.56 Aligned_cols=208 Identities=19% Similarity=0.161 Sum_probs=140.5
Q ss_pred CcHHHHHHHHHHhhhcCcccHHHHH-hhccCccceeecCCCCCCCc------------hH---HHH-HHhcCCCeeEEEe
Q 011688 2 LPRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVND------------KW---MDV-IASQGSSLLSVDL 64 (479)
Q Consensus 2 ~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~------------~~---~~~-~~~~~~~l~~L~l 64 (479)
.++|+++.|+.+|++++++...... .+..|++||+....+..+.. .. ... -......+|.+.+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 4579999999999999999876653 44477888775442211110 00 000 0012345677777
Q ss_pred eCCCCCcchhhcccCCCCCCEEecCCCCC-CChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccc
Q 011688 65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR 143 (479)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 143 (479)
-++.+... ..-..++.|++|-+.++.. +.....+.|..++.|+.|++++|.. -..+|..++.+-+||+|++++ +.
T Consensus 531 ~~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~-t~ 606 (889)
T KOG4658|consen 531 MNNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD-TG 606 (889)
T ss_pred eccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC-CC
Confidence 77654322 2224567899998887432 5555666788899999999998764 367899999999999999998 45
Q ss_pred cccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC--CChHHHHHhhcCCCCCEEEecCC
Q 011688 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGC 214 (479)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~ 214 (479)
+...|..+.++.+|.+|++......... +.....+.+|++|.+.... .+......+..+.+|+.+.+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 6678888999999999999875554433 4445568899999987654 23334445566666666666443
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-12 Score=106.05 Aligned_cols=256 Identities=22% Similarity=0.286 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHhhhcCcccHHHH-HhhccCc-----cceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcc-hh
Q 011688 2 LPRDISQQIFNELVYSRCLTEVSL-EAFRDCA-----LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDS-GL 74 (479)
Q Consensus 2 ~~~~v~~~~~~~l~~~~~~~~~~~-~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~ 74 (479)
+|+|+..++|..|....++....+ ..|.+|. .+.++...- .+.+...+.+. ...+..+.+...-+.+. ..
T Consensus 101 lpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r-~i~p~~l~~l~--~rgV~v~Rlar~~~~~prla 177 (419)
T KOG2120|consen 101 LPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGR-NIHPDVLGRLL--SRGVIVFRLARSFMDQPRLA 177 (419)
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCC-ccChhHHHHHH--hCCeEEEEcchhhhcCchhh
Confidence 799999999998887777665443 2232331 222222222 12222222222 23455666654333222 11
Q ss_pred hcccCC-CCCCEEecCCCCCCChh-HHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCcccccccc--cc
Q 011688 75 IHLKDC-SNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL--VN 150 (479)
Q Consensus 75 ~~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 150 (479)
+.+.-+ ..|+.||++. ..++.. ....+++|.+|+.|.+.+.. +.+.....+++-.+|+.++++.|..+.... ..
T Consensus 178 e~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 178 EHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHH
Confidence 222222 2577777776 344433 33455677777777777776 466667777777777777777765443322 23
Q ss_pred ccCCCCCcEEeccCCCCCCccccccccC-CCCCcEEEcccCC--CChHHHHHh-hcCCCCCEEEecCC-CCCHHHHHHhh
Q 011688 151 LKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSK--VTDSGIAYL-KGLQKLTLLNLEGC-PVTAACLDSLS 225 (479)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~l-~~l~~L~~L~l~~~-~~~~~~~~~l~ 225 (479)
+..|..|..|++++|...+......+.. -++|..|+++++. +.......+ +++++|..|+++++ .+.......|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 4566777777777766554432222221 2456666666542 112222222 45666666666665 33344445555
Q ss_pred CCCCCcEEEccCCCCCch-hhHhhhCCCCCCEEeccCC
Q 011688 226 ALGSLFYLNLNRCQLSDD-GCEKFSRLTNLESLNLDSC 262 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 262 (479)
+++.|++|.++.|..-.. ..-.+...|.|.+|++.++
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 566666666666542111 0112233455556655555
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=4e-12 Score=101.60 Aligned_cols=106 Identities=29% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCcEEecCCCCCCHHHHHHHh-cCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEE
Q 011688 324 SSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 402 (479)
.++++|+++++.+.... .++ .+.+|+.|++++|.+... ..+..++.|+.|++++|.++.........+|+|++|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 44555555555554431 222 344555555555555543 2344455555555555555443221112345555555
Q ss_pred cCCCCCCCHH-HHHHHhcCCCCCeeecCCCccC
Q 011688 403 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 403 l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
+++| .+.+. -...+..+|+|+.|++.+|+++
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555 33221 1122334555555555555544
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-11 Score=102.21 Aligned_cols=179 Identities=26% Similarity=0.304 Sum_probs=94.1
Q ss_pred CCCEEeccCCCCChHHH-HHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCC-CCChHHHH-HhhCCCCCcEE
Q 011688 253 NLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLR-KLAGLSSLKSL 329 (479)
Q Consensus 253 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~~L~~L 329 (479)
.|+.+++++..++.... ..+..|.+|+.+.+.|+++.+.....++.-.+|+.|+++.+ .++..... .+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665544322 23456666777777776666666566666666777777665 44443333 23456777777
Q ss_pred ecCCCCCCHHHHHHH-h-cCCCCCEEEcCCCc--cchhHHHhh-hcCCCCcEEEecCCC-CCchhHHhhhhcCCCCEEEc
Q 011688 330 NLDARQITDTGLAAL-T-SLTGLTHLDLFGAR--ITDSGAAYL-RNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNL 403 (479)
Q Consensus 330 ~l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l 403 (479)
++++|.+........ . --+.|+.|+++|+. +.......+ ..||+|..|++++|. ++..-...+-+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777766544332211 1 12456666666651 211112222 456666666666553 22222334445566666666
Q ss_pred CCCCCCCHHHHHHHhcCCCCCeeecCCC
Q 011688 404 SQNCNLTDKTLELISGLTGLVSLNVSNS 431 (479)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 431 (479)
+.|..+.....-.+...|+|.+|++.+|
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6664443322223344556666666555
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.8e-12 Score=113.76 Aligned_cols=209 Identities=22% Similarity=0.267 Sum_probs=105.2
Q ss_pred CCCCCcEEEccCCCCCchhh-HhhhCCCCCCEEeccCCCCCh--HHHHHHhcCCCCCEEeccCcccChhhhH-hhcCCCC
Q 011688 226 ALGSLFYLNLNRCQLSDDGC-EKFSRLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTN 301 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 301 (479)
++.+|+.+.+.++....... .....|++++.|+++.|-+.. ........+|+|+.|+++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45666677776665544332 233446777777777664332 2223344666777777766654322111 1123556
Q ss_pred CCEEEccCCCCChHHHHHh-hCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhH-HHhhhcCCCCcEEEe
Q 011688 302 LESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEI 379 (479)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 379 (479)
|+.|.++.|.++......+ ..+|+|+.|++..|............++.|+.|+|++|++.... ....+.+|.|..|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6666666666654333322 33666666666665311111111223445666666666554432 122355666666666
Q ss_pred cCCCCCchhHHh------hhhcCCCCEEEcCCCCCCCHH-HHHHHhcCCCCCeeecCCCccCH
Q 011688 380 CGGGLTDAGVKH------IKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 380 ~~~~~~~~~~~~------l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
+.+++....... ...+++|++|++..| .+.++ ....+..+++|+.|.+..+.+..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccc
Confidence 666554321110 123466666666666 34322 23344445666666666655543
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-13 Score=104.67 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=63.0
Q ss_pred hhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCC
Q 011688 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181 (479)
Q Consensus 102 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 181 (479)
+..+.+|+.|++.+++. ..+|..++.+++|++|+++- ..+...|..|+.+|-|++|++.+++.-....++.|..++.
T Consensus 52 ia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred HHHhhhhhhhhcccchh--hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence 34444444444444442 34444455555555555543 2334444445555555555555433333333344444445
Q ss_pred CcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCC
Q 011688 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (479)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 241 (479)
|+-|++..+.+.. .+...+++++|+.|.+.++.+... |..++.+..|++|.+.+|.+.
T Consensus 129 lralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 129 LRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee
Confidence 5555555444432 233344555555555555544332 444444555555555555443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.1e-11 Score=109.02 Aligned_cols=207 Identities=19% Similarity=0.143 Sum_probs=101.9
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchh--hcccCCCCCCEEecCCCCCCChh-HHHHhhCCCCC
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGL--IHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNL 108 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L 108 (479)
+++++.+++++ +...........+++++.|+|+.|-+..-.. .....+|+|+.|+++.+ .+... ....-..+++|
T Consensus 122 kL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 122 KLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHL 199 (505)
T ss_pred hhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhh
Confidence 35555555553 2221111233446777777777654332111 12356677777777663 22211 11111245667
Q ss_pred cEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcc
Q 011688 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (479)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 188 (479)
+.|.+++|.............+|+|+.|++.+|............+..|+.|++++++.++.......+.++.|..|.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 77777777643333333444677777777766543333333344456677777776555554444455566666666666
Q ss_pred cCCCChHHHH------HhhcCCCCCEEEecCCCCCHH-HHHHhhCCCCCcEEEccCCCC
Q 011688 189 CSKVTDSGIA------YLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQL 240 (479)
Q Consensus 189 ~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 240 (479)
.+.+++.... .....++|+.|++..|.+... ....+..+++|+.|.+..+.+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 6665542211 113345555555555544221 112233344445554444433
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=1.8e-11 Score=122.67 Aligned_cols=182 Identities=23% Similarity=0.281 Sum_probs=124.7
Q ss_pred cCCCeeEEEeeCCC--CCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCC
Q 011688 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
.++.+++|-+.++. +.......|..+|.|++||+++|..+. ..|..++.+-+||+|+++++.. ..+|..++++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence 46679999999975 554555558899999999999976544 4588999999999999999974 478999999999
Q ss_pred CcEEEccCccccccccccccCCCCCcEEeccCCC-CCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCE---
Q 011688 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--- 208 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~--- 208 (479)
|.+|++..+......+.....+.+||+|.+.... ..+......+.++.+|+.+.+..... .....+..+.+|.+
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 9999999877666666666779999999998754 23333335556666777666643322 11222333333332
Q ss_pred -EEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCc
Q 011688 209 -LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242 (479)
Q Consensus 209 -L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 242 (479)
+.+.++.... .+..+..+++|+.|.+.++...+
T Consensus 698 ~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 698 SLSIEGCSKRT-LISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhhcccccce-eecccccccCcceEEEEcCCCch
Confidence 2222222211 24455667777777777776644
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.08 E-value=6.9e-13 Score=101.30 Aligned_cols=158 Identities=22% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEe
Q 011688 251 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330 (479)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (479)
+.+++.|.++.++++...+ .++.+.+|+.|++.+|++. ..+..++++++|+.|.++-+.+.. .+..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence 3455566666665543332 3455666666666666653 334445556666666665554332 344555555555555
Q ss_pred cCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC
Q 011688 331 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (479)
+..|.+.+.. .+..|-.+..|+.|.+++|.+.-. +..++.+.+|+.|.+..| ++.
T Consensus 109 ltynnl~e~~-----------------------lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdn-dll 163 (264)
T KOG0617|consen 109 LTYNNLNENS-----------------------LPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDN-DLL 163 (264)
T ss_pred cccccccccc-----------------------CCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccC-chh
Confidence 5554443321 122222334444444555444332 333444555555555555 332
Q ss_pred HHHHHHHhcCCCCCeeecCCCccCHHH
Q 011688 411 DKTLELISGLTGLVSLNVSNSRITSAG 437 (479)
Q Consensus 411 ~~~~~~l~~~~~L~~L~l~~~~~~~~~ 437 (479)
. .|..++.++.|++|.|.+|.++..+
T Consensus 164 ~-lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 164 S-LPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred h-CcHHHHHHHHHHHHhcccceeeecC
Confidence 2 3444455555555555555554433
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=5.5e-10 Score=89.42 Aligned_cols=125 Identities=29% Similarity=0.372 Sum_probs=38.4
Q ss_pred CCCCEEEccCCCCChHHHHHhh-CCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEE
Q 011688 300 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378 (479)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (479)
..++.|++.++.++.. +.++ .+.+|++|++++|.+... ..+..+++|++|++++|.++.........+|+|+.|.
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3455566665555432 2333 345666666666666553 2344566677777777766655332224566777777
Q ss_pred ecCCCCCchh-HHhhhhcCCCCEEEcCCCCCCCH---HHHHHHhcCCCCCeeecC
Q 011688 379 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTD---KTLELISGLTGLVSLNVS 429 (479)
Q Consensus 379 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~ 429 (479)
+++|.+.+.. ...+..+|+|+.|++.+|+ +.. .-...+..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 7777665422 2345566777777777773 221 123344556666666543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.7e-10 Score=96.67 Aligned_cols=130 Identities=25% Similarity=0.344 Sum_probs=93.2
Q ss_pred CCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEE
Q 011688 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 402 (479)
...|+++++++|.+.... +...-.|.++.|++++|.+..... +..+++|+.|++++|.++.. ..+-..+-+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 356788888888776554 345566788888888888776533 66778888888888877653 23334567888888
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHH-HcccCCCccceecccccccCH
Q 011688 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 403 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+++| .+.. ...+..+-+|..|++++|++..... +.+.++|.|+.+.+.+||+..
T Consensus 359 La~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8887 4433 4556677788888888888776543 667788888888888887643
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.96 E-value=1.1e-08 Score=84.84 Aligned_cols=189 Identities=23% Similarity=0.266 Sum_probs=101.6
Q ss_pred hhhCCCCCCEEeccCCCCChH----HHHHHhcCCCCCEEeccCcccChhhhH-------------hhcCCCCCCEEEccC
Q 011688 247 KFSRLTNLESLNLDSCGIGDE----GLVNLTGLCNLKCLELSDTQVGSSGLR-------------HLSGLTNLESINLSF 309 (479)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~ 309 (479)
.+.+||+|+.+++++|.+... ....++..+.|++|.+.+|.+....-. ...+-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344555666666655533322 122234445566666665554332211 113456777777776
Q ss_pred CCCChHH----HHHhhCCCCCcEEecCCCCCCHHHH-----HHHhcCCCCCEEEcCCCccchhHHH----hhhcCCCCcE
Q 011688 310 TGISDGS----LRKLAGLSSLKSLNLDARQITDTGL-----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRS 376 (479)
Q Consensus 310 ~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~ 376 (479)
|.+.... ...+....+|+++.+..|.+...+. ..+..+++|+.|++.+|.++..+.. .+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 6554322 2223333577777777776654422 2234677888888888877654433 3355677788
Q ss_pred EEecCCCCCchhHHhh------hhcCCCCEEEcCCCCC----CCHHHHHHHh--cCCCCCeeecCCCccCH
Q 011688 377 LEICGGGLTDAGVKHI------KDLSSLTLLNLSQNCN----LTDKTLELIS--GLTGLVSLNVSNSRITS 435 (479)
Q Consensus 377 L~l~~~~~~~~~~~~l------~~~~~L~~L~l~~~~~----~~~~~~~~l~--~~~~L~~L~l~~~~~~~ 435 (479)
|.+.+|-+...+...+ ...|+|..|...+|.. +..+....+. ++|-|..|.+.+|.+..
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 8888777665544332 2247777777777732 1111112222 25666666666666554
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.84 E-value=1.3e-07 Score=78.48 Aligned_cols=207 Identities=21% Similarity=0.282 Sum_probs=125.2
Q ss_pred hhCCCCCCEEeccCCCCChHHHHHHh----cCCCCCEEeccCcccCh---h-------hhHhhcCCCCCCEEEccCCCCC
Q 011688 248 FSRLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGS---S-------GLRHLSGLTNLESINLSFTGIS 313 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~---~-------~~~~~~~~~~L~~L~l~~~~~~ 313 (479)
+..+..+..+++++|.+......+++ +-.+|+..++++-.... . ..+.+-.||+|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34467888999999988766655544 44677777776532211 1 1234567889999999888665
Q ss_pred hHHH----HHhhCCCCCcEEecCCCCCCHHHHH----HH---------hcCCCCCEEEcCCCccchhHH----HhhhcCC
Q 011688 314 DGSL----RKLAGLSSLKSLNLDARQITDTGLA----AL---------TSLTGLTHLDLFGARITDSGA----AYLRNFK 372 (479)
Q Consensus 314 ~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~---------~~~~~L~~L~l~~~~~~~~~~----~~~~~~~ 372 (479)
...+ ..++.-+.|++|.+++|.+....-. ++ ..-|.|+.+.+..|.+...+. ..+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 4433 3345568888888888876543211 11 134677777777776653322 2222225
Q ss_pred CCcEEEecCCCCCchhHH-----hhhhcCCCCEEEcCCCCCCCHHHHH----HHhcCCCCCeeecCCCccCHHHHHcc--
Q 011688 373 NLRSLEICGGGLTDAGVK-----HIKDLSSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSAGLRHL-- 441 (479)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~l-- 441 (479)
.|+.+.+..|.|...+.. .+..+.+|+.|++..| .++..... .++.++.|++|.+..|-++..+...+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 677777777776644332 2345677777777777 45444332 33446677777777776655444222
Q ss_pred ----cCCCccceeccccc
Q 011688 442 ----KPLKNLRSLTLESC 455 (479)
Q Consensus 442 ----~~~~~L~~L~l~~~ 455 (479)
...|+|+.|....|
T Consensus 265 ~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HhhhhcCCCccccccchh
Confidence 23566677766666
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=4.1e-09 Score=88.52 Aligned_cols=129 Identities=24% Similarity=0.311 Sum_probs=86.5
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
+.|+++++++|.+... .++..-.|.++.|++++|.+... ..++.+++|+.|++++|.++... .+-..+.++++|.+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence 4567777777766543 45566667888888888777654 33666778888888887554322 22235667888888
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCCCCCh-HHHHHhhCCCCCcEEecCCCCCCH
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
.+|.+. ....+..+.+|..|++++|.+.. .....++++|.|+++.+.+|.+..
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777653 23345566777888888887654 245667788888888888887654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.4e-09 Score=71.35 Aligned_cols=59 Identities=36% Similarity=0.441 Sum_probs=33.0
Q ss_pred CCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccc
Q 011688 397 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
+|++|++++| .+....+..|.++++|++|++++|.+..+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555 4555444455555555555555555555555555556666666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=6.1e-09 Score=68.33 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=35.5
Q ss_pred CCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
|+|++|++++|++...+...+.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34566666666666555555566666666666666665555555566666666666655
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=92.82 Aligned_cols=127 Identities=24% Similarity=0.340 Sum_probs=66.7
Q ss_pred cCCCCCEEEcCCCccchhH-HHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCH-HHHHHHhcCCCC
Q 011688 346 SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGL 423 (479)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L 423 (479)
.+|+|++|.+.+-.+.... .....++|+|..||+++++++.. .++..+++|+.|.+.+- .+.. .-...+.++++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC-CCCchhhHHHHhcccCC
Confidence 4556666666554443222 22235556666666666665543 44555566666666554 2222 222334456666
Q ss_pred CeeecCCCccCHHH------HHcccCCCccceecccccccCHHHHHHHHhccCCCcccc
Q 011688 424 VSLNVSNSRITSAG------LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476 (479)
Q Consensus 424 ~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l 476 (479)
+.||+|........ .+.-..+|+|+.||.++..++..-++.+. ...|+|+.+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll-~sH~~L~~i 280 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL-NSHPNLQQI 280 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH-HhCccHhhh
Confidence 66666654322111 12223467777777777777766666665 455665543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.1e-07 Score=93.70 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecC
Q 011688 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 429 (479)
++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++| .+....|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 445555555555544555555556666666666555554555555566666666665 5555555555556666666666
Q ss_pred CCccCHHHHHcccC-CCccceeccccc
Q 011688 430 NSRITSAGLRHLKP-LKNLRSLTLESC 455 (479)
Q Consensus 430 ~~~~~~~~~~~l~~-~~~L~~L~l~~~ 455 (479)
+|.+....|..+.. ..++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 66555444444332 123444555544
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.6e-07 Score=88.46 Aligned_cols=149 Identities=32% Similarity=0.471 Sum_probs=60.1
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEec
Q 011688 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 380 (479)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 380 (479)
+|+.|+++++.+.... ..+..+++|+.|.++.|.+.+.... ....+.|+.|.+++|++...+.. ......|+++.++
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhc
Confidence 3444444444333211 2233344444444444444433221 11334444444444444433221 1122234444454
Q ss_pred CCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceeccccccc
Q 011688 381 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 457 (479)
Q Consensus 381 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 457 (479)
+|.+... +..+..++++..+.+.+| .+.. .+..+..+++++.|++++|.+..+.. +....+++.|+++++.+
T Consensus 218 ~N~~~~~-~~~~~~~~~l~~l~l~~n-~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 218 NNSIIEL-LSSLSNLKNLSGLELSNN-KLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred CCcceec-chhhhhcccccccccCCc-eeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence 4432111 222333444444444444 2222 13333444445555555555444332 44445555555555433
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.1e-07 Score=80.16 Aligned_cols=203 Identities=24% Similarity=0.235 Sum_probs=122.5
Q ss_pred CCCCCCEEeccCCCCChH--HHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCCCCC
Q 011688 250 RLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSL 326 (479)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 326 (479)
.++.++.+++.+|.+++- ....+..+|.|+.|+++.|++.......-....+|+.|.+.+..+.-... ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356677777777766542 22345577777777777777654332211345577777777765543333 233456777
Q ss_pred cEEecCCCCCCHHHHHH---HhcCCCCCEEEcCCCccchh--HHHhhhcCCCCcEEEecCCCCCchhH-HhhhhcCCCCE
Q 011688 327 KSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDS--GAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTL 400 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~ 400 (479)
+.|+++.|.......+. -..-+.++++....|..... ....-..+|++..+.+..|++..... .....+|.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 77777776432211100 01223455666666633211 11222457899999999888765432 34556788888
Q ss_pred EEcCCCCCCCHH-HHHHHhcCCCCCeeecCCCccCHHHHHc------ccCCCccceeccc
Q 011688 401 LNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH------LKPLKNLRSLTLE 453 (479)
Q Consensus 401 L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~------l~~~~~L~~L~l~ 453 (479)
|+|+.+ ++.++ ....+.++|+|..|.++++++.+..... +..+++++.|+=+
T Consensus 229 LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 999988 66554 5678889999999999999887633211 3457777776543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3e-07 Score=90.81 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=73.9
Q ss_pred CcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCC
Q 011688 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 405 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 405 (479)
++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777776665556666777777777777777666666667777777777777777766667777777777777777
Q ss_pred CCCCCHHHHHHHhc-CCCCCeeecCCCc
Q 011688 406 NCNLTDKTLELISG-LTGLVSLNVSNSR 432 (479)
Q Consensus 406 ~~~~~~~~~~~l~~-~~~L~~L~l~~~~ 432 (479)
| .+....|..+.. ..++..+++.+|.
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 7 666666666654 3456667777664
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=3.4e-09 Score=96.76 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=46.8
Q ss_pred CCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecC
Q 011688 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 429 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 429 (479)
|+.|.+++|+++..+ ..++..+.|..|+.+.|.+... +..+..+.+|+.|++..| .+.. +|..+. .-.|..||++
T Consensus 145 Lkvli~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn-~l~~-lp~El~-~LpLi~lDfS 219 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRN-HLED-LPEELC-SLPLIRLDFS 219 (722)
T ss_pred ceeEEEecCccccCC-cccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhh-hhhh-CCHHHh-CCceeeeecc
Confidence 444444444444332 2223344444455544444332 333444444555554444 3333 222233 2234455555
Q ss_pred CCccCHHHHHcccCCCccceecccccccCHHHHH
Q 011688 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 463 (479)
Q Consensus 430 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 463 (479)
+|++..+ |..|.+++.|++|-+.+||+..+..+
T Consensus 220 cNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 220 CNKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred cCceeec-chhhhhhhhheeeeeccCCCCCChHH
Confidence 5554443 23444555555555555555444443
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.45 E-value=2e-07 Score=91.65 Aligned_cols=106 Identities=27% Similarity=0.283 Sum_probs=62.6
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcch-hhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 110 (479)
.++++.+.+.......|...+...+|.|++|.+++-.+.... .....+||+|+.||++++ +++.. ..++++++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHHH
Confidence 355566665555566666666666777777777664443222 233466677777777763 44442 55666666666
Q ss_pred EEcCCCCcccHHHHHHHhCCCCCcEEEccC
Q 011688 111 LSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (479)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (479)
|.+.+-+.........+.++++|++||++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 666665543334445555666666666665
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=2e-08 Score=94.50 Aligned_cols=197 Identities=24% Similarity=0.282 Sum_probs=114.5
Q ss_pred CCCCcEEEccCCCCCchh-hHhhhCCCCCCEEeccCCCCChHHHHHHhcC-CCCCEEeccCcccChhhhHhhcC------
Q 011688 227 LGSLFYLNLNRCQLSDDG-CEKFSRLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSG------ 298 (479)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~------ 298 (479)
+++++.+.+-...-.+.. +-.+..+..|+.|.+.+|.+.. ...+..+ ..|++|.-.+ ... .....|..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccc
Confidence 344455544433222211 3345567889999999987643 1111111 2344442221 110 01111110
Q ss_pred ----CCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 299 ----LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 299 ----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
...|.+.+++.|.+.. ....+.-++.+++|++++|++.+.. .+..|+.|++|+|++|.+...+.....+|. |
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 1234445555554432 2233444588888899888887764 567888889999988887766554455565 8
Q ss_pred cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHH-HHHHhcCCCCCeeecCCCccC
Q 011688 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 434 (479)
+.|.+.+|.++. ...+.++.+|+.|++++| -+.+.. ...+..+..|+.|++.||++.
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888888765 456777888888888888 333321 122344667888888888764
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=7.7e-07 Score=83.84 Aligned_cols=194 Identities=27% Similarity=0.408 Sum_probs=96.5
Q ss_pred EEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCC-CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCC
Q 011688 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262 (479)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (479)
.+....+.+... ...+...+.++.+++.++.+... +....... +|+.|+++++.+.... ..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence 455554443211 22234446667777777666554 33333442 6777777766665432 23455666777777666
Q ss_pred CCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHH
Q 011688 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (479)
++.+.... ....++|+.++++++.+...... ......|+++.++++.... .+..+..++++..+.+.++.+... +.
T Consensus 174 ~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cc
Confidence 55433322 22456666666666665433221 1223346666666553111 222334445555555555444332 12
Q ss_pred HHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCc
Q 011688 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
.++.++.+++|++++|.++.... ++...+++.|+++++.+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 23444555555555555554433 4445555555555555443
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.30 E-value=5.7e-07 Score=87.50 Aligned_cols=139 Identities=29% Similarity=0.405 Sum_probs=70.2
Q ss_pred HHHHHhcCCCeeEEEeeCCC-CCcch-hhcccCCCCCCEEecCC-CCCCChhH---HHHhhCCCCCcEEEcCCCCcccHH
Q 011688 49 MDVIASQGSSLLSVDLSGSD-VTDSG-LIHLKDCSNLQSLDFNF-CIQISDGG---LEHLRGLSNLTSLSFRRNNAITAQ 122 (479)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~-~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~ 122 (479)
...+...++.++.+.+.++. +.... ......+++|+.|++++ |....... ......+++|+.|+++.+..+++.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 33334446666666666642 33222 22345666666666665 22222211 122334566666666666655555
Q ss_pred HHHHHhC-CCCCcEEEccCccc-ccccc-ccccCCCCCcEEeccCCCCCCcccccc-ccCCCCCcEEEc
Q 011688 123 GMKAFAG-LINLVKLDLERCTR-IHGGL-VNLKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQI 187 (479)
Q Consensus 123 ~~~~~~~-l~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l 187 (479)
....++. |++|++|.+.+|.. .+... .....++.|++|++++|..+++..... ..++++++.+.+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5555553 66677666666653 22222 223346667777777666554332221 234555555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.9e-07 Score=77.63 Aligned_cols=205 Identities=18% Similarity=0.172 Sum_probs=113.4
Q ss_pred CCEEeccCCCCChHH-HHHHh-cCCCCCEEeccCcccChhh--hHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEE
Q 011688 254 LESLNLDSCGIGDEG-LVNLT-GLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 329 (479)
Q Consensus 254 L~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 329 (479)
++-+.+.++.+.... ...++ .++.++.+++.+|.++++. ...+.++|.|+.|+++.|.+.......-....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 344555555443322 22232 4577888888888876543 3445778888888888876653211111245678888
Q ss_pred ecCCCCCCHHHH-HHHhcCCCCCEEEcCCCccchhH--HHhhh-cCCCCcEEEecCCCCCchh--HHhhhhcCCCCEEEc
Q 011688 330 NLDARQITDTGL-AALTSLTGLTHLDLFGARITDSG--AAYLR-NFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNL 403 (479)
Q Consensus 330 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l 403 (479)
.+.+..+.-... ..+..+|.++.|.++.|.+.... .+... .-+.+.+++...|...... ...-.-+|++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 887766543322 22345666667766666332211 11111 1235555555555432110 011123477777777
Q ss_pred CCCCCCCHH-HHHHHhcCCCCCeeecCCCccCHHH-HHcccCCCccceecccccccCH
Q 011688 404 SQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 404 ~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
..| -+... .-.....+|.+--|+++.+++.... ...+..+++|..|.++++|+.+
T Consensus 207 ~e~-PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 207 CEG-PLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ecC-cccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 776 23332 2234455677777777777765433 3566777888888888887654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=5.3e-08 Score=91.79 Aligned_cols=196 Identities=26% Similarity=0.248 Sum_probs=124.8
Q ss_pred cCCCCCEEEecCCCCCHHH-HHHhhCCCCCcEEEccCCCCCchhhHhhhC-CCCCCEEeccCCCCChHHHHHHh------
Q 011688 202 GLQKLTLLNLEGCPVTAAC-LDSLSALGSLFYLNLNRCQLSDDGCEKFSR-LTNLESLNLDSCGIGDEGLVNLT------ 273 (479)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~------ 273 (479)
-+++++.+.+-...-.+.. |-.+..+.+|++|.+.++.+... ..+.. -..|++|...+. + +.....|.
T Consensus 82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l-~Al~~v~ascggd~ 157 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-L-DALRHVFASCGGDI 157 (1096)
T ss_pred HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-H-HHHHHHHHHhcccc
Confidence 3455555555444222111 55667788999999999887652 11111 134666554432 1 11111121
Q ss_pred -c---CCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCC
Q 011688 274 -G---LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349 (479)
Q Consensus 274 -~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 349 (479)
+ ...|...+.+.|.+. .....+.-++.|++|+++.|++.+.. .+..++.|++|+++.|.+...+.-....|.
T Consensus 158 ~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 158 SNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK- 233 (1096)
T ss_pred ccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-
Confidence 1 124556666666553 33445566788999999999887544 677889999999999887665433233444
Q ss_pred CCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchh-HHhhhhcCCCCEEEcCCCC
Q 011688 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 407 (479)
|..|.+++|.++.. ..+.++.+|+.|+++.|-+.+.. ...+..+..|+.|+|.+|+
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 89999999987754 44567889999999998776532 2345667889999999984
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=6.4e-08 Score=91.17 Aligned_cols=219 Identities=32% Similarity=0.368 Sum_probs=127.2
Q ss_pred CCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEE
Q 011688 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+..++.+.+..+.+... ...+..+.+|+.+++.++.+..... .+..+++|+++++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 344555555666555441 1224556777788887776543221 1556777888888877775432 23445557777
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC
Q 011688 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
++.+|.+.. ...+..+++|+.+++++|.+..........+.+++.+.+.+|.+..... +..+..+..+++..|.+.
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccce
Confidence 777776653 2233346777777777777666543103456677777777776654321 122223333455556554
Q ss_pred chhHHhhhhcCC--CCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 386 DAGVKHIKDLSS--LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 386 ~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
... .+..... |+.+++++| .+... +..+..++.+..+++.++.+... ..+...+.+.++...++++.
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n-~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGN-RISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ecc--CcccchhHHHHHHhcccC-ccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 421 1222222 778888887 45442 24455677888888888776653 34455667777777777655
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=2.7e-06 Score=82.77 Aligned_cols=131 Identities=33% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCcEEEccCCCCCch--hhHhhhCCCCCCEEeccCC--CCChH---HHHHHhcCCCCCEEeccCcc-cChhhhHhhc
Q 011688 226 ALGSLFYLNLNRCQLSDD--GCEKFSRLTNLESLNLDSC--GIGDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 297 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 297 (479)
..+.|+.+.+.++..... .......++.|+.|+++++ ..... .......+++|+.+++..+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467788887777643332 2244456778888888762 11111 12223345677777777665 5555555443
Q ss_pred C-CCCCCEEEccCCC-CChHHHHHhh-CCCCCcEEecCCCCCC-HHHH-HHHhcCCCCCEEEcC
Q 011688 298 G-LTNLESINLSFTG-ISDGSLRKLA-GLSSLKSLNLDARQIT-DTGL-AALTSLTGLTHLDLF 356 (479)
Q Consensus 298 ~-~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~ 356 (479)
. |++|+.|.+.+|. +++.....+. .+++|++|++++|... +... .....|++++.+.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 3 6777777766665 5555554444 3666777777766543 2211 122346666555443
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=1.1e-07 Score=89.70 Aligned_cols=243 Identities=28% Similarity=0.348 Sum_probs=166.2
Q ss_pred cCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEE
Q 011688 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281 (479)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (479)
.+..++.+++..+.+... ...+..+.+++.+++.++.+..... .+..+++|+.|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 345556666666655441 3346778899999999998876532 1567899999999999876543 35567779999
Q ss_pred eccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCcc
Q 011688 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (479)
++.+|.+... ..+..++.|+.++++++.+..... . ...+.+++.+.+.++.+..... +..+..+..+.+..+.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccc
Confidence 9999988543 345558899999999998876555 3 5678999999999988765431 22223344446667766
Q ss_pred chhHHHhhhcCC--CCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHH-
Q 011688 361 TDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG- 437 (479)
Q Consensus 361 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~- 437 (479)
+.... +...+ .|+.+.+++|++.... ..+..+..+..+++.++ .+.. ...+...+.+..+....+.+....
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchhh
Confidence 64322 22222 3889999999987642 45666789999999988 4443 233445667777777777765321
Q ss_pred --H-HcccCCCccceecccccccCH
Q 011688 438 --L-RHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 438 --~-~~l~~~~~L~~L~l~~~~~~~ 459 (479)
. ......+.+..+.+..+++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1 224567888999999987654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=7.5e-06 Score=65.28 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=47.8
Q ss_pred CCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHH-HHHHhcCCCCCeeec
Q 011688 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNV 428 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l 428 (479)
...+++++|.+... ..+..++.|.+|.+.+|.|+...+..-..+|+|..|.+.+| .+.... ...+..||.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 34444444444322 22344455555555555555544433333455555555555 333321 122344555555555
Q ss_pred CCCccCHHHH---HcccCCCccceeccccc
Q 011688 429 SNSRITSAGL---RHLKPLKNLRSLTLESC 455 (479)
Q Consensus 429 ~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 455 (479)
-+|+++...- ..+..+|+|+.||+++-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5555443221 23345556666655543
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=8.8e-06 Score=64.96 Aligned_cols=82 Identities=33% Similarity=0.498 Sum_probs=42.1
Q ss_pred CcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhc-CCCCCeeecCCC-ccCHHHHHcccCCCccceec
Q 011688 374 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLT 451 (479)
Q Consensus 374 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 451 (479)
++.++.+++.|...+...+..+++++.|.+.+|..+.++..+.+++ .++|+.|+|++| +|++.+...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444445555555545555555555555555554455544444444 445555555555 45555555555555555555
Q ss_pred cccc
Q 011688 452 LESC 455 (479)
Q Consensus 452 l~~~ 455 (479)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5544
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=3.4e-06 Score=62.72 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCcEEecCCCCCCHH--HHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEE
Q 011688 324 SSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 401 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 401 (479)
..+..++++.|.+... ....+.....|+.+++++|.+...++.+-..+|.++.|++.+|.+.+. |..++.++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence 3455677777765532 223344556677778888888776666666677888888888888776 4447888888888
Q ss_pred EcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHH
Q 011688 402 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 439 (479)
+++.| .+.. .|..+..+.++..|+..+|....++..
T Consensus 106 Nl~~N-~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFN-PLNA-EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccC-cccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 88888 4444 455566677788888888776665544
No 59
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=3.2e-07 Score=84.27 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=88.7
Q ss_pred EEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCC
Q 011688 232 YLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 311 (479)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (479)
..+++.|++.... ..+..+..|+.+.+..|.+.. .+..+.++..|..++++.|+++... ..+..+| |+.|.+++|+
T Consensus 79 ~aDlsrNR~~elp-~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSELP-EEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccccCc-hHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEEEecCc
Confidence 4455555554432 233344455555555544332 2233556666777777766664322 2233333 6666666666
Q ss_pred CChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHh
Q 011688 312 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391 (479)
Q Consensus 312 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 391 (479)
++. .+..++..+.|..|+.+.|.+..... .++.+.+|+.|.+..|++...+.+. . .-.|.+||++.|++... |..
T Consensus 155 l~~-lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis~i-Pv~ 229 (722)
T KOG0532|consen 155 LTS-LPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKISYL-PVD 229 (722)
T ss_pred ccc-CCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHHH-h-CCceeeeecccCceeec-chh
Confidence 554 23334455666666666666555432 3445566666666666665543332 2 22456666666666543 455
Q ss_pred hhhcCCCCEEEcCCC
Q 011688 392 IKDLSSLTLLNLSQN 406 (479)
Q Consensus 392 l~~~~~L~~L~l~~~ 406 (479)
|..+..|++|-|.+|
T Consensus 230 fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENN 244 (722)
T ss_pred hhhhhhheeeeeccC
Confidence 666666666666666
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.6e-05 Score=47.42 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=15.8
Q ss_pred CCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 422 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+|++|++++|+++++++ .+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 34445555554444322 2444555555555555444
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=1.8e-05 Score=47.20 Aligned_cols=38 Identities=39% Similarity=0.509 Sum_probs=21.2
Q ss_pred CCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 396 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
++|++|++++| ++.+ ++..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N-~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 35666666666 5554 33345666666666666666554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=9e-06 Score=60.53 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCEEEccCCCCCh--HHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEe
Q 011688 302 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379 (479)
Q Consensus 302 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 379 (479)
+..++++.|.+.. ..+..+.....|+..++++|.+.+.+......++..+.+++++|++...+.+ +..+|.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence 4455666664431 2344555567777778888877766655555667788888888888776555 777888888888
Q ss_pred cCCCCCchhHHhhhhcCCCCEEEcCCCCCCCH
Q 011688 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411 (479)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (479)
+.|.+... +..+..+.++-.|+..+| ....
T Consensus 108 ~~N~l~~~-p~vi~~L~~l~~Lds~~n-a~~e 137 (177)
T KOG4579|consen 108 RFNPLNAE-PRVIAPLIKLDMLDSPEN-ARAE 137 (177)
T ss_pred ccCccccc-hHHHHHHHhHHHhcCCCC-cccc
Confidence 88887655 444445777777877777 4443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=6.2e-06 Score=69.11 Aligned_cols=101 Identities=23% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhH-HhhhhcCCCCEE
Q 011688 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLL 401 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 401 (479)
+.+.+.|++.||.+.++. ....++.|+.|.|+-|+++.. ..+..|++|++|.|..|.|.+... ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345566666666666643 234666777777777766654 334566777777777776655322 344566777777
Q ss_pred EcCCCCCCCHHHH----HHHhcCCCCCeee
Q 011688 402 NLSQNCNLTDKTL----ELISGLTGLVSLN 427 (479)
Q Consensus 402 ~l~~~~~~~~~~~----~~l~~~~~L~~L~ 427 (479)
+|..|+.-....+ ..+..+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777643333222 2344566666664
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.70 E-value=1.8e-05 Score=61.33 Aligned_cols=13 Identities=8% Similarity=0.347 Sum_probs=5.1
Q ss_pred hhhcCCCCEEEcC
Q 011688 392 IKDLSSLTLLNLS 404 (479)
Q Consensus 392 l~~~~~L~~L~l~ 404 (479)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3334444444443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=1.5e-05 Score=63.60 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=82.9
Q ss_pred CCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHH-HcccCCCcccee
Q 011688 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSL 450 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L 450 (479)
.+...+++++|.+.. ...|+.++.|.+|.+++| .++.+-|..-..+|+|+.|.+.+|.+...+. ..+..||.|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 467789999998765 345778899999999999 8988777766678999999999999887653 556789999999
Q ss_pred cccccccCH-HHHHHHHhccCCCccccC
Q 011688 451 TLESCKVTA-NDIKRLQSRDLPNLVSFR 477 (479)
Q Consensus 451 ~l~~~~~~~-~~~~~l~~~~~~~l~~l~ 477 (479)
.+-+|+++. ...+......+|+|+.|+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEee
Confidence 999999876 345555555678887765
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=2.6e-05 Score=60.44 Aligned_cols=122 Identities=23% Similarity=0.331 Sum_probs=52.1
Q ss_pred hhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
.|.++++|+.+.+.. .+.......+..+++|+.+.+... +.......+..+++++.+.+.+ .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555566655543 333334444555556666666553 4443344555666677777754 4444444556667777
Q ss_pred cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCC
Q 011688 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 423 (479)
+.+.+..+ +.......+..+ .|+.+.+..+ +..+....|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 77777654 444545556665 7777776653 444444555555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=1.8e-05 Score=66.39 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=80.2
Q ss_pred CCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHH-HHHHHhcCCCCCe
Q 011688 347 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVS 425 (479)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~ 425 (479)
+.+.++|++.||.+.++ .....++.|+.|.|+-|.|+. ...+..|..|++|.|..| .|.+. -...+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 44667889999988875 345678999999999999877 445778899999999998 56553 2345678999999
Q ss_pred eecCCCccCHHHH-----HcccCCCccceecccccccCHHHHH
Q 011688 426 LNVSNSRITSAGL-----RHLKPLKNLRSLTLESCKVTANDIK 463 (479)
Q Consensus 426 L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~ 463 (479)
|+|..|+...... ..+.-+|+|+.|| +-++++..++
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle 133 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELE 133 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHH
Confidence 9999887654333 3355678888664 3366665554
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=5.9e-05 Score=60.37 Aligned_cols=82 Identities=33% Similarity=0.446 Sum_probs=42.5
Q ss_pred eeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhC-CCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEE
Q 011688 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (479)
++.++-+++.|..+....+..++.++.|.+.+|..+.+...+.++. .++|+.|++++|+.+++.....+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4445555555555555555555555555555555555554444443 345555555555555555555555555555554
Q ss_pred ccC
Q 011688 138 LER 140 (479)
Q Consensus 138 l~~ 140 (479)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00011 Score=61.47 Aligned_cols=104 Identities=26% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCC--CCCHHHHHHhhCCCCCcEEEccCCCCCc-hhhHhhhCCCCCCE
Q 011688 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC--PVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSRLTNLES 256 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 256 (479)
..|+.+++.+..++. ...+..+++|++|.++.+ ++..........+|+|+++++++|++.. ........+++|..
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344444444443332 223444556666666655 3333323333344666666666666553 11233345566777
Q ss_pred EeccCCCC---ChHHHHHHhcCCCCCEEeccC
Q 011688 257 LNLDSCGI---GDEGLVNLTGLCNLKCLELSD 285 (479)
Q Consensus 257 L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~ 285 (479)
|++.+|.. .+.-...|.-+++|++++-..
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 77776632 233334455667777766544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00025 Score=59.43 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=40.1
Q ss_pred hcCCCCCEEEcCCC--ccchhHHHhhhcCCCCcEEEecCCCCCch-hHHhhhhcCCCCEEEcCCCCC--CCHHHHHHHhc
Q 011688 345 TSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCN--LTDKTLELISG 419 (479)
Q Consensus 345 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~l~~ 419 (479)
..+++|++|.++.| ............+|+|+++.+++|++... ....+..+++|..|++.+|.. +...--..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34455555555555 33222222223446666666666665531 122334455666666666621 22222233444
Q ss_pred CCCCCeeecC
Q 011688 420 LTGLVSLNVS 429 (479)
Q Consensus 420 ~~~L~~L~l~ 429 (479)
+++|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5556555543
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.02 E-value=0.0019 Score=59.17 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=25.6
Q ss_pred hCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCC
Q 011688 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 310 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (479)
..+.+++.|++++|.+.... .-.++|+.|.+.++..-...+..+ .++|+.|++.+|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34566666666666443221 112246666665533212222111 134555555554
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.90 E-value=0.0017 Score=59.44 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCC-CCCHHHHHHHhcCCC
Q 011688 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALTSLTG 349 (479)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 349 (479)
.+..+.+++.|++++|.+.... .+ .++|++|.+++|.--...+..+ .++|+.|.+++| .+.. + .++
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----L--P~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----L--PES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----c--ccc
Confidence 3556788999999988664332 11 2469999998864322223333 268999999987 3321 1 256
Q ss_pred CCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC-ch-hHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeee
Q 011688 350 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 427 (479)
|+.|.+.++...... . -.++|+.|.+.+++.. .. .+.. -.++|++|++++|..+. .|..+. .+|+.|+
T Consensus 114 Le~L~L~~n~~~~L~--~--LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~--LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIK--N--VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII--LPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccc--c--CcchHhheeccccccccccccccc--cCCcccEEEecCCCccc--Cccccc--ccCcEEE
Confidence 888888765443211 1 1246788887543311 10 0111 13689999999984332 233222 5899999
Q ss_pred cCCCccCH--HHHHcccCCCccceeccccc
Q 011688 428 VSNSRITS--AGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 428 l~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 455 (479)
++.+.... +....+. +++ .|++.+|
T Consensus 184 ls~n~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 184 LHIEQKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred ecccccccccCcccccc--ccc-Eechhhh
Confidence 98764221 1122222 344 6666665
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.23 E-value=0.00067 Score=64.32 Aligned_cols=184 Identities=30% Similarity=0.429 Sum_probs=97.0
Q ss_pred CCEEeccCCCCChHHHH----HHhcCCCCCEEeccCcccChhhhHhhc----CC-CCCCEEEccCCCCChHHH----HHh
Q 011688 254 LESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL 320 (479)
Q Consensus 254 L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~----~~l 320 (479)
+..+.+.+|.+.+.... .+...+.|..+++++|.+.......+. .. ..++.|++..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777766544333 344567888888888887755544332 11 345666666666554332 333
Q ss_pred hCCCCCcEEecCCCCCCHHHH----HHHh----cCCCCCEEEcCCCccchhHH----HhhhcCCC-CcEEEecCCCCCch
Q 011688 321 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGA----AYLRNFKN-LRSLEICGGGLTDA 387 (479)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~~~~~ 387 (479)
.....++.++++.|.+...+. ..+. ...++++|.+.+|.++.... ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 446677777777776643221 1111 24456666666666553322 12233333 45566666666544
Q ss_pred hHHhh----hhc-CCCCEEEcCCCCCCCHHHH----HHHhcCCCCCeeecCCCccCHHHH
Q 011688 388 GVKHI----KDL-SSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGL 438 (479)
Q Consensus 388 ~~~~l----~~~-~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~ 438 (479)
+...+ ..+ +.+++++++.| .+..... ..+..++.++++.+++|.+.....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 33222 222 34566666666 4444332 223335556666666665554433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.55 E-value=0.0018 Score=61.56 Aligned_cols=187 Identities=28% Similarity=0.367 Sum_probs=129.3
Q ss_pred CCEEeccCcccChhhhH----hhcCCCCCCEEEccCCCCChHHHHHhhC----C-CCCcEEecCCCCCCHHHH----HHH
Q 011688 278 LKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKLAG----L-SSLKSLNLDARQITDTGL----AAL 344 (479)
Q Consensus 278 L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~----~~~ 344 (479)
+..+.+.+|.+...... .+...+.|+.|+++++.+.+.....+.+ . ..++.|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776554443 4466789999999999888766555543 2 557778888887766443 344
Q ss_pred hcCCCCCEEEcCCCccchhH----HHhhh----cCCCCcEEEecCCCCCchhHH----hhhhcCC-CCEEEcCCCCCCCH
Q 011688 345 TSLTGLTHLDLFGARITDSG----AAYLR----NFKNLRSLEICGGGLTDAGVK----HIKDLSS-LTLLNLSQNCNLTD 411 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~----~~~~~----~~~~L~~L~l~~~~~~~~~~~----~l~~~~~-L~~L~l~~~~~~~~ 411 (479)
.....++.++++.|.+...+ ...+. ...++++|++..|.++..... .+...+. +..+++.+| .+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-Ccch
Confidence 46778888999888775332 22223 356789999999988754433 2344455 777999998 6665
Q ss_pred HHH----HHHhcC-CCCCeeecCCCccCHHHH----HcccCCCccceecccccccCHHHHHHH
Q 011688 412 KTL----ELISGL-TGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 412 ~~~----~~l~~~-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l 465 (479)
... ..+..+ +.++.++++.|.+...+. ..+..++.++++.++.|++++...+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 533 334444 677999999999877555 445678899999999999988665543
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.45 E-value=0.02 Score=29.53 Aligned_cols=24 Identities=46% Similarity=0.884 Sum_probs=15.5
Q ss_pred CCCCCEEecCCCCCCChhHHHHhh
Q 011688 80 CSNLQSLDFNFCIQISDGGLEHLR 103 (479)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~ 103 (479)
|++|+.|++++|..+++.+...++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466777777777667666655543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.13 E-value=0.034 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=12.6
Q ss_pred CccceecccccccCHHHHHHH
Q 011688 445 KNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l 465 (479)
++|+.|++++|++++.+++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566777777777776666554
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.55 E-value=0.11 Score=26.65 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHh
Q 011688 105 LSNLTSLSFRRNNAITAQGMKAFA 128 (479)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~~~ 128 (479)
|++|++|++++|..+++.....++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 578999999999888887777665
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.01 E-value=0.027 Score=27.63 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=8.5
Q ss_pred CCCeeecCCCccCH
Q 011688 422 GLVSLNVSNSRITS 435 (479)
Q Consensus 422 ~L~~L~l~~~~~~~ 435 (479)
+|++|++++|+++.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 35666666666664
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.26 E-value=0.067 Score=24.28 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=4.0
Q ss_pred CCCeeecCCCcc
Q 011688 422 GLVSLNVSNSRI 433 (479)
Q Consensus 422 ~L~~L~l~~~~~ 433 (479)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.80 E-value=0.12 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=4.2
Q ss_pred CCcEEEecCCCCC
Q 011688 373 NLRSLEICGGGLT 385 (479)
Q Consensus 373 ~L~~L~l~~~~~~ 385 (479)
+|++|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3333333333333
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.86 E-value=0.37 Score=25.27 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.7
Q ss_pred CccceecccccccCHHHHHHHH
Q 011688 445 KNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~ 466 (479)
++|++|++++|.+++.+...+-
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888887776654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.75 E-value=0.3 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=12.4
Q ss_pred CCCCeeecCCCccCHHHHHcc
Q 011688 421 TGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~l 441 (479)
++|+.|++++|.+..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666544443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.75 E-value=0.3 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=12.4
Q ss_pred CCCCeeecCCCccCHHHHHcc
Q 011688 421 TGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~l 441 (479)
++|+.|++++|.+..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666544443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.87 E-value=0.93 Score=43.05 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=37.0
Q ss_pred hcCCCCcEEEecCCCCCchhH-Hhh-hhcCCCCEEEcCCCCCCCHHHHHHHhc--CCCCCeeecCCCccCH
Q 011688 369 RNFKNLRSLEICGGGLTDAGV-KHI-KDLSSLTLLNLSQNCNLTDKTLELISG--LTGLVSLNVSNSRITS 435 (479)
Q Consensus 369 ~~~~~L~~L~l~~~~~~~~~~-~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~ 435 (479)
.+.|.+..+.+++|++..... ..+ ...|+|+.|+|++|..... ...++.+ ...|++|.+.||++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcccc
Confidence 456777888888887654321 112 3347788888887722221 1222222 3456777777776543
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.44 E-value=4 Score=20.96 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=7.1
Q ss_pred CCCCeeecCCCccC
Q 011688 421 TGLVSLNVSNSRIT 434 (479)
Q Consensus 421 ~~L~~L~l~~~~~~ 434 (479)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.96 E-value=7.9 Score=37.15 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=37.9
Q ss_pred cCCCCCEEEcCCCccchhH--HHhhhcCCCCcEEEecCC--CCCchhHHhhh--hcCCCCEEEcCCCC
Q 011688 346 SLTGLTHLDLFGARITDSG--AAYLRNFKNLRSLEICGG--GLTDAGVKHIK--DLSSLTLLNLSQNC 407 (479)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~--~~~~L~~L~l~~~~ 407 (479)
+.+.+..+++++|++-... ...-...|.|+.|+|++| .+.. ..++. ....|++|.+.+|+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCc
Confidence 5677788888888765432 112245688888888888 3332 22232 23567888888884
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.04 E-value=6.3 Score=20.21 Aligned_cols=14 Identities=57% Similarity=0.714 Sum_probs=8.7
Q ss_pred CCCeeecCCCccCH
Q 011688 422 GLVSLNVSNSRITS 435 (479)
Q Consensus 422 ~L~~L~l~~~~~~~ 435 (479)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 56666666666554
No 88
>PF14162 YozD: YozD-like protein
Probab=45.52 E-value=25 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhcCccc
Q 011688 4 RDISQQIFNELVYSRCLT 21 (479)
Q Consensus 4 ~~v~~~~~~~l~~~~~~~ 21 (479)
+++++-++++|++|..+.
T Consensus 11 EEIAefFy~eL~kRGyvP 28 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVP 28 (57)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 789999999999999985
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=38.05 E-value=0.98 Score=37.86 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=59.1
Q ss_pred HhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCC
Q 011688 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 423 (479)
+....+.+.|+++.+.+...+. .+..++.+.+|+++.|.+... +..+.+...++.+++.+| +... .|..+...|.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n-~~~~-~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKN-NHSQ-QPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhcc-chhh-CCccccccCCc
Confidence 3455677788888777655432 234456778888887776433 555566667777777776 4443 56667778888
Q ss_pred CeeecCCCccCH
Q 011688 424 VSLNVSNSRITS 435 (479)
Q Consensus 424 ~~L~l~~~~~~~ 435 (479)
++++..++.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 888888887654
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=36.25 E-value=1.6 Score=36.63 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=44.5
Q ss_pred hhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccC
Q 011688 74 LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG 153 (479)
Q Consensus 74 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (479)
...++.+...+.||++.+. +.. .-..|+.++.|..|+++.+.. ...|..+++...++.++... ...+..|.+++.
T Consensus 35 v~ei~~~kr~tvld~~s~r-~vn-~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k 109 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNR-LVN-LGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHK-NNHSQQPKSQKK 109 (326)
T ss_pred hhhhhccceeeeehhhhhH-HHh-hccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhc-cchhhCCccccc
Confidence 3456677777777777632 221 122344455666666665542 34455555555555555443 223334444555
Q ss_pred CCCCcEEeccC
Q 011688 154 LMKLESLNIKW 164 (479)
Q Consensus 154 l~~L~~L~l~~ 164 (479)
.++++.++..+
T Consensus 110 ~~~~k~~e~k~ 120 (326)
T KOG0473|consen 110 EPHPKKNEQKK 120 (326)
T ss_pred cCCcchhhhcc
Confidence 55555555444
Done!