Query 011688
Match_columns 479
No_of_seqs 302 out of 3070
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 13:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 2.4E-42 8.1E-47 342.7 17.4 396 57-458 33-536 (606)
2 3t6q_A CD180 antigen; protein- 100.0 3E-42 1E-46 342.0 13.8 399 55-459 55-561 (606)
3 3rgz_A Protein brassinosteroid 100.0 1.5E-43 5.3E-48 358.6 3.2 416 32-458 179-717 (768)
4 3rgz_A Protein brassinosteroid 100.0 2.4E-42 8E-47 349.9 8.3 415 53-478 174-711 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-40 1.5E-44 330.8 12.7 180 297-478 427-616 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-40 7.7E-45 328.6 8.3 396 56-458 31-558 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-39 5.5E-44 326.7 14.1 418 57-478 25-543 (680)
8 2z81_A CD282 antigen, TOLL-lik 100.0 7E-38 2.4E-42 307.1 23.6 398 56-459 25-511 (549)
9 2z63_A TOLL-like receptor 4, v 100.0 1.9E-40 6.5E-45 327.0 2.6 397 56-459 27-532 (570)
10 4eco_A Uncharacterized protein 100.0 1.3E-40 4.5E-45 329.5 1.3 399 49-459 73-601 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-39 6.2E-44 332.2 4.9 397 55-458 22-517 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-39 4.8E-44 320.8 2.4 395 32-435 29-532 (570)
13 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-39 1.6E-43 319.1 5.5 409 59-478 13-552 (606)
14 4ecn_A Leucine-rich repeat pro 100.0 9.9E-39 3.4E-43 320.8 5.1 400 49-459 315-841 (876)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-36 5.2E-41 295.3 17.7 387 57-459 21-482 (520)
16 1z7x_W Ribonuclease inhibitor; 100.0 6.9E-34 2.4E-38 272.6 30.4 396 56-476 2-460 (461)
17 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-38 3.3E-42 319.4 3.3 394 55-459 46-540 (844)
18 3v47_A TOLL-like receptor 5B a 100.0 2.6E-36 8.8E-41 288.9 12.9 365 57-458 30-408 (455)
19 4eco_A Uncharacterized protein 100.0 2.2E-37 7.5E-42 306.5 5.6 383 81-478 81-594 (636)
20 2z81_A CD282 antigen, TOLL-lik 100.0 4E-36 1.4E-40 294.5 13.7 408 59-478 7-504 (549)
21 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.8E-40 283.8 12.3 356 32-406 31-405 (455)
22 4ecn_A Leucine-rich repeat pro 100.0 1.6E-35 5.4E-40 297.6 9.3 382 81-478 323-834 (876)
23 1z7x_W Ribonuclease inhibitor; 100.0 6E-33 2E-37 266.1 26.1 362 81-466 3-419 (461)
24 1o6v_A Internalin A; bacterial 100.0 9.1E-33 3.1E-37 264.2 26.0 346 56-436 45-390 (466)
25 2p1m_B Transport inhibitor res 100.0 1.5E-31 5.1E-36 264.9 35.1 465 1-474 8-534 (594)
26 1o6v_A Internalin A; bacterial 100.0 1.6E-32 5.4E-37 262.6 26.5 344 80-458 45-388 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-34 1E-38 281.3 14.9 389 56-459 51-511 (562)
28 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-33 1.1E-37 272.0 19.6 389 31-435 21-482 (520)
29 3ogk_B Coronatine-insensitive 100.0 2.3E-32 7.9E-37 270.5 25.9 463 2-475 16-542 (592)
30 4fmz_A Internalin; leucine ric 100.0 2.3E-31 7.8E-36 245.1 25.6 306 103-458 41-346 (347)
31 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-33 2.2E-37 277.2 15.4 399 56-459 51-581 (635)
32 2id5_A Lingo-1, leucine rich r 100.0 3.6E-33 1.2E-37 268.4 11.5 320 109-434 14-333 (477)
33 4fmz_A Internalin; leucine ric 100.0 5.1E-30 1.7E-34 236.1 28.1 301 56-406 43-343 (347)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-32 4.7E-37 269.5 10.4 388 32-435 53-511 (562)
35 2id5_A Lingo-1, leucine rich r 100.0 5E-32 1.7E-36 260.5 12.9 299 106-406 32-330 (477)
36 2p1m_B Transport inhibitor res 100.0 9.4E-30 3.2E-34 252.0 27.7 425 43-478 32-513 (594)
37 3o6n_A APL1; leucine-rich repe 100.0 3.3E-31 1.1E-35 247.8 16.0 318 104-466 43-360 (390)
38 3ogk_B Coronatine-insensitive 100.0 3.1E-30 1.1E-34 255.3 23.1 418 32-455 74-548 (592)
39 3o6n_A APL1; leucine-rich repe 100.0 6.7E-30 2.3E-34 238.9 16.5 312 79-436 43-354 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.2E-30 1.4E-34 253.1 15.4 309 105-434 50-358 (597)
41 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-31 1.6E-35 263.8 4.6 406 61-478 35-574 (635)
42 3oja_B Anopheles plasmodium-re 100.0 4.3E-29 1.5E-33 245.9 16.3 315 79-415 49-363 (597)
43 3bz5_A Internalin-J, INLJ; leu 100.0 2E-28 6.7E-33 232.0 19.5 339 56-458 41-387 (457)
44 3bz5_A Internalin-J, INLJ; leu 100.0 5E-29 1.7E-33 236.1 15.2 342 32-441 43-394 (457)
45 1xku_A Decorin; proteoglycan, 100.0 3.8E-28 1.3E-32 221.6 12.8 269 180-456 52-330 (330)
46 1xku_A Decorin; proteoglycan, 99.9 5.7E-27 1.9E-31 213.8 12.7 289 107-432 32-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 8E-28 2.7E-32 219.6 6.1 290 132-456 34-331 (332)
48 1jl5_A Outer protein YOPM; leu 99.9 1.1E-27 3.9E-32 226.6 7.0 350 55-459 32-410 (454)
49 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-28 1.1E-32 219.6 0.1 249 180-456 50-302 (313)
50 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-27 1.9E-31 214.0 8.2 244 107-363 34-279 (332)
51 2z80_A TOLL-like receptor 2, v 99.9 2.7E-26 9.2E-31 211.3 9.4 255 180-459 52-315 (353)
52 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-27 4.1E-32 215.9 0.3 259 48-311 38-302 (313)
53 1jl5_A Outer protein YOPM; leu 99.9 2.4E-24 8.2E-29 203.9 19.2 344 57-460 71-431 (454)
54 2z80_A TOLL-like receptor 2, v 99.9 3.8E-24 1.3E-28 197.0 16.3 255 56-312 51-313 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 208.9 8.0 227 204-433 64-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.9E-29 207.3 9.1 226 204-432 75-301 (452)
57 2z66_A Variable lymphocyte rec 99.9 3.4E-25 1.2E-29 199.9 4.8 228 229-458 29-261 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-25 1.4E-29 199.8 4.1 237 178-429 32-270 (317)
59 1ozn_A Reticulon 4 receptor; N 99.9 5.3E-25 1.8E-29 196.4 3.8 203 204-406 32-235 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-24 9.1E-29 191.8 8.2 224 207-434 14-238 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.9 8.7E-25 3E-29 197.8 3.5 260 181-455 11-272 (317)
62 2ca6_A RAN GTPase-activating p 99.9 1.7E-22 5.9E-27 188.3 18.7 239 198-437 26-319 (386)
63 3zyi_A Leucine-rich repeat-con 99.9 1.6E-23 5.3E-28 199.5 11.9 227 57-311 75-301 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 198.1 12.1 227 57-287 64-290 (440)
65 2ast_B S-phase kinase-associat 99.9 5.8E-22 2E-26 181.4 20.5 249 182-438 49-310 (336)
66 2ca6_A RAN GTPase-activating p 99.9 3E-21 1E-25 179.9 24.0 256 174-430 26-339 (386)
67 2z66_A Variable lymphocyte rec 99.9 1.5E-23 5.1E-28 189.1 7.1 227 155-406 28-258 (306)
68 4fcg_A Uncharacterized protein 99.9 6.4E-24 2.2E-28 192.6 3.8 235 202-457 79-313 (328)
69 2ast_B S-phase kinase-associat 99.9 9.9E-22 3.4E-26 179.8 18.2 249 204-459 47-307 (336)
70 3goz_A Leucine-rich repeat-con 99.9 3E-22 1E-26 184.6 14.5 222 185-406 3-263 (362)
71 4fcg_A Uncharacterized protein 99.9 1E-23 3.6E-28 191.1 4.6 236 178-434 79-314 (328)
72 1wwl_A Monocyte differentiatio 99.9 5.7E-25 2E-29 198.5 -6.3 253 175-459 38-310 (312)
73 3oja_A Leucine-rich immune mol 99.9 1E-22 3.6E-27 194.6 8.8 235 204-453 34-270 (487)
74 1wwl_A Monocyte differentiatio 99.9 4.1E-24 1.4E-28 192.9 -1.4 245 151-406 39-306 (312)
75 3oja_A Leucine-rich immune mol 99.9 3.9E-23 1.3E-27 197.5 3.4 237 178-429 32-270 (487)
76 3goz_A Leucine-rich repeat-con 99.9 6.2E-21 2.1E-25 175.9 17.2 252 208-460 2-299 (362)
77 3g06_A SSPH2 (leucine-rich rep 99.9 6E-21 2.1E-25 186.0 16.0 266 131-442 40-305 (622)
78 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-21 1.3E-25 187.3 14.5 269 106-421 40-308 (622)
79 2z62_A TOLL-like receptor 4, v 99.8 3.4E-22 1.2E-26 177.2 5.3 204 228-433 28-236 (276)
80 2o6q_A Variable lymphocyte rec 99.8 8.2E-22 2.8E-26 173.9 5.8 200 229-432 17-216 (270)
81 2z62_A TOLL-like receptor 4, v 99.8 1.6E-21 5.4E-26 173.0 6.1 201 205-406 29-234 (276)
82 2o6q_A Variable lymphocyte rec 99.8 5.5E-21 1.9E-25 168.6 7.4 199 205-406 17-215 (270)
83 1h6u_A Internalin H; cell adhe 99.8 5.1E-20 1.7E-24 165.4 12.5 194 226-436 39-232 (308)
84 3rfs_A Internalin B, repeat mo 99.8 6.9E-21 2.3E-25 168.1 6.7 208 227-446 40-247 (272)
85 3rfs_A Internalin B, repeat mo 99.8 1.3E-20 4.3E-25 166.4 7.7 198 249-458 38-235 (272)
86 4glp_A Monocyte differentiatio 99.8 6.2E-21 2.1E-25 172.0 2.4 229 204-459 64-308 (310)
87 1h6u_A Internalin H; cell adhe 99.8 2.4E-19 8.2E-24 161.0 12.5 193 201-410 38-230 (308)
88 1p9a_G Platelet glycoprotein I 99.8 3E-20 1E-24 165.2 5.3 202 224-433 6-207 (290)
89 4glp_A Monocyte differentiatio 99.8 1.6E-19 5.3E-24 162.8 10.0 205 179-386 63-286 (310)
90 1p9a_G Platelet glycoprotein I 99.8 9.3E-20 3.2E-24 162.0 6.6 201 200-407 6-206 (290)
91 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.4E-25 163.2 0.4 197 229-455 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 157.4 5.9 177 253-433 15-191 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 8.2E-20 2.8E-24 158.1 2.7 197 204-406 31-236 (239)
94 3m19_A Variable lymphocyte rec 99.7 8.2E-19 2.8E-23 152.9 5.0 180 228-411 14-193 (251)
95 1h6t_A Internalin B; cell adhe 99.7 2.1E-17 7.3E-22 146.9 11.3 173 249-436 43-215 (291)
96 3sb4_A Hypothetical leucine ri 99.7 3.8E-18 1.3E-22 155.0 2.6 286 154-452 24-328 (329)
97 1h6t_A Internalin B; cell adhe 99.7 3.3E-17 1.1E-21 145.7 8.4 167 226-406 44-210 (291)
98 4ezg_A Putative uncharacterize 99.7 4.8E-17 1.6E-21 135.9 8.3 153 299-459 43-195 (197)
99 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.2E-22 149.7 4.0 102 323-427 225-327 (329)
100 1m9s_A Internalin B; cell inva 99.7 2.1E-16 7.2E-21 153.9 10.8 186 248-448 39-224 (605)
101 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.9E-21 155.1 9.5 173 224-411 39-211 (605)
102 4ezg_A Putative uncharacterize 99.6 3E-16 1E-20 131.1 8.9 149 277-434 45-194 (197)
103 2o6s_A Variable lymphocyte rec 99.6 4.2E-17 1.4E-21 137.8 2.5 162 276-445 28-189 (208)
104 2o6s_A Variable lymphocyte rec 99.6 1.7E-16 5.8E-21 134.0 5.5 153 299-459 27-179 (208)
105 2v9t_B SLIT homolog 2 protein 99.6 1.3E-16 4.6E-21 135.5 3.6 133 300-433 32-164 (220)
106 2xot_A Amphoterin-induced prot 99.6 1.9E-16 6.5E-21 145.7 4.6 175 255-433 21-201 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 2.4E-16 8E-21 134.0 4.5 151 279-433 14-165 (220)
108 4fs7_A Uncharacterized protein 99.6 1.5E-16 5E-21 148.3 2.1 335 69-450 59-393 (394)
109 3e6j_A Variable lymphocyte rec 99.6 5E-16 1.7E-20 132.9 4.8 133 324-458 40-172 (229)
110 2xot_A Amphoterin-induced prot 99.6 7.9E-16 2.7E-20 141.5 6.2 173 231-406 21-199 (361)
111 1xeu_A Internalin C; cellular 99.6 5.4E-16 1.9E-20 135.6 4.8 169 252-436 19-187 (263)
112 4ay9_X Follicle-stimulating ho 99.6 3.6E-16 1.2E-20 143.2 3.5 188 56-244 29-218 (350)
113 2v9t_B SLIT homolog 2 protein 99.6 6.2E-16 2.1E-20 131.4 4.7 149 255-406 14-162 (220)
114 4fs7_A Uncharacterized protein 99.6 4.1E-16 1.4E-20 145.3 2.6 334 95-476 60-393 (394)
115 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-15 6.8E-20 128.2 5.9 149 255-406 14-163 (220)
116 3un9_A NLR family member X1; l 99.6 2.8E-14 9.5E-19 130.8 13.9 185 275-460 71-285 (372)
117 4ay9_X Follicle-stimulating ho 99.6 1.9E-16 6.5E-21 145.0 -1.4 203 158-365 12-219 (350)
118 3un9_A NLR family member X1; l 99.6 6E-14 2E-18 128.6 15.0 185 251-436 71-285 (372)
119 3cvr_A Invasion plasmid antige 99.5 5.4E-15 1.9E-19 142.4 8.1 188 204-420 59-253 (571)
120 4fdw_A Leucine rich hypothetic 99.5 6.8E-15 2.3E-19 136.2 8.3 130 300-434 248-383 (401)
121 3e6j_A Variable lymphocyte rec 99.5 4.6E-15 1.6E-19 126.9 6.0 130 276-406 40-169 (229)
122 3cvr_A Invasion plasmid antige 99.5 4.1E-15 1.4E-19 143.2 6.3 187 228-443 59-252 (571)
123 1xeu_A Internalin C; cellular 99.5 2E-15 6.7E-20 132.0 3.6 163 229-406 20-182 (263)
124 4fdw_A Leucine rich hypothetic 99.5 2.3E-15 8E-20 139.3 4.2 218 229-456 158-381 (401)
125 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 115.2 5.4 65 370-435 62-127 (149)
126 2ell_A Acidic leucine-rich nuc 99.5 6.1E-15 2.1E-19 119.8 3.4 132 324-458 24-160 (168)
127 1dce_A Protein (RAB geranylger 99.5 3.3E-16 1.1E-20 151.7 -6.1 122 349-477 442-566 (567)
128 2je0_A Acidic leucine-rich nuc 99.5 9.4E-14 3.2E-18 110.2 8.9 109 276-386 17-127 (149)
129 1dce_A Protein (RAB geranylger 99.5 4.7E-16 1.6E-20 150.6 -5.6 196 249-452 346-567 (567)
130 2ell_A Acidic leucine-rich nuc 99.4 2.3E-14 8E-19 116.3 2.5 111 322-435 47-161 (168)
131 1a9n_A U2A', U2A'; complex (nu 99.4 6.2E-14 2.1E-18 114.6 4.8 108 349-459 43-154 (176)
132 1w8a_A SLIT protein; signaling 99.4 4.9E-14 1.7E-18 116.9 2.7 128 303-434 11-139 (192)
133 4gt6_A Cell surface protein; l 99.4 2.6E-13 9E-18 126.3 6.2 128 320-455 261-388 (394)
134 4gt6_A Cell surface protein; l 99.4 1.7E-12 5.7E-17 120.9 11.6 333 72-432 54-389 (394)
135 2o6r_A Variable lymphocyte rec 99.4 3E-13 1E-17 110.8 5.8 110 348-458 28-137 (177)
136 2wfh_A SLIT homolog 2 protein 99.4 2E-13 6.8E-18 113.1 4.2 126 303-433 13-138 (193)
137 1a9n_A U2A', U2A'; complex (nu 99.4 3.6E-13 1.2E-17 110.0 5.3 135 297-436 16-155 (176)
138 1ds9_A Outer arm dynein; leuci 99.4 9.7E-15 3.3E-19 122.0 -4.5 133 319-459 43-186 (198)
139 1w8a_A SLIT protein; signaling 99.3 3.6E-13 1.2E-17 111.6 2.4 128 279-410 11-139 (192)
140 1ds9_A Outer arm dynein; leuci 99.3 5.3E-14 1.8E-18 117.5 -3.1 129 343-477 43-180 (198)
141 2o6r_A Variable lymphocyte rec 99.3 1.5E-12 5.3E-17 106.5 5.4 110 324-434 28-137 (177)
142 2wfh_A SLIT homolog 2 protein 99.3 2.8E-12 9.5E-17 106.2 6.0 124 279-406 13-136 (193)
143 4b8c_D Glucose-repressible alc 99.2 5.8E-13 2E-17 133.2 -0.9 87 298-387 245-331 (727)
144 4b8c_D Glucose-repressible alc 99.2 9.4E-13 3.2E-17 131.7 -1.2 120 221-344 217-336 (727)
145 3g39_A Variable lymphocyte rec 99.2 1.2E-11 4.2E-16 100.0 3.9 103 327-433 12-114 (170)
146 4h09_A Hypothetical leucine ri 99.2 2.5E-11 8.5E-16 112.5 6.1 97 344-444 259-355 (379)
147 3e4g_A ATP synthase subunit S, 99.2 7.4E-11 2.5E-15 93.6 7.8 102 372-474 61-170 (176)
148 4h09_A Hypothetical leucine ri 99.1 1.1E-10 3.8E-15 108.1 9.8 122 295-421 235-356 (379)
149 3e4g_A ATP synthase subunit S, 99.1 1.2E-10 4.1E-15 92.4 8.4 90 57-146 61-154 (176)
150 2r9u_A Variable lymphocyte rec 99.1 2.3E-11 7.7E-16 98.8 3.8 104 327-434 15-118 (174)
151 2ra8_A Uncharacterized protein 99.1 6.9E-10 2.4E-14 100.7 13.0 156 295-456 167-341 (362)
152 3g39_A Variable lymphocyte rec 99.0 6.6E-11 2.3E-15 95.7 3.3 102 302-406 11-112 (170)
153 2r9u_A Variable lymphocyte rec 99.0 1.2E-10 4.2E-15 94.4 3.3 101 303-406 15-115 (174)
154 2ra8_A Uncharacterized protein 99.0 1.2E-08 4E-13 92.6 16.1 160 221-406 165-340 (362)
155 1io0_A Tropomodulin; LRR prote 98.9 9.8E-09 3.3E-13 84.0 12.5 123 318-461 30-167 (185)
156 1io0_A Tropomodulin; LRR prote 98.9 4.7E-08 1.6E-12 79.9 14.5 115 292-406 28-161 (185)
157 2ifg_A High affinity nerve gro 98.9 1.5E-09 5.1E-14 99.2 4.8 88 344-433 27-115 (347)
158 2ifg_A High affinity nerve gro 98.7 7E-09 2.4E-13 94.7 4.4 103 304-410 12-116 (347)
159 3rw6_A Nuclear RNA export fact 98.2 6.8E-07 2.3E-11 76.7 3.9 81 395-477 169-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 5.3E-06 1.8E-10 71.2 5.7 62 370-434 168-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 0.00012 4.2E-09 59.1 13.2 111 322-432 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 7.9E-05 2.7E-09 60.3 11.7 117 342-459 35-171 (197)
163 3rfe_A Platelet glycoprotein I 94.2 0.018 6.2E-07 43.2 1.9 54 376-433 12-67 (130)
164 3rfe_A Platelet glycoprotein I 94.1 0.024 8.2E-07 42.6 2.3 53 351-406 11-65 (130)
165 2lz0_A Uncharacterized protein 81.7 0.63 2.2E-05 32.7 1.8 47 68-116 7-53 (100)
166 2lz0_A Uncharacterized protein 79.4 0.41 1.4E-05 33.7 0.2 46 384-431 8-53 (100)
167 2a5y_B CED-4; apoptosis; HET: 23.6 13 0.00045 35.6 -0.8 40 2-42 426-465 (549)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-42 Score=342.73 Aligned_cols=396 Identities=21% Similarity=0.227 Sum_probs=215.0
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+.+++|+++++.++...+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....|..++.+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence 45677777777776666666777777777777763 4565556667777777777777765 344455666677777777
Q ss_pred EccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCC--EEEecCC
Q 011688 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 214 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~ 214 (479)
++++|......+..+..+++|++|+++++. +.......+..+++|+.|++++|.+....+..++.+++|+ .|+++++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 777765444445556667777777777633 4433333344466677777766666655555555555555 4555544
Q ss_pred CCCHH---------------------------------------------------------------------------
Q 011688 215 PVTAA--------------------------------------------------------------------------- 219 (479)
Q Consensus 215 ~~~~~--------------------------------------------------------------------------- 219 (479)
.+...
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 33221
Q ss_pred HHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhh-hHhhcC
Q 011688 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSG 298 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 298 (479)
.+..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.... ...+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 12224445566666666665553 2334555566666666666555544444555556666666555443221 223444
Q ss_pred CCCCCEEEccCCCCChHH--HHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCC------------------
Q 011688 299 LTNLESINLSFTGISDGS--LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA------------------ 358 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------ 358 (479)
+++|+.|++++|.+.... +..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 555555555555544332 333444555555555555444433333444444444444444
Q ss_pred -------ccchhHHHhhhcCCCCcEEEecCCCCCchh---HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeec
Q 011688 359 -------RITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 359 -------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 428 (479)
.+....+..+..+++|++|++++|.+.+.. +..+..+++|++|++++| .+....+..+.++++|++|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence 444433334444455555555555443311 123444455555555555 444444444555555555555
Q ss_pred CCCccCHHHHHcccCCCccceecccccccC
Q 011688 429 SNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 429 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
++|++....+..+..++.| .|++++|+++
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCccc
Confidence 5555555555555555555 5555555544
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-42 Score=342.02 Aligned_cols=399 Identities=21% Similarity=0.201 Sum_probs=264.0
Q ss_pred cCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCc
Q 011688 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
.+++|++|++++|.+....+..|.++++|++|++++| .+....+..++.+++|++|++++|. +....+..++++++|+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLE 132 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCC
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCccc
Confidence 4666777777777776666666777777777777763 4555555666677777777777765 3343345566666777
Q ss_pred EEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCc--EEEcccC----------------------
Q 011688 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISCS---------------------- 190 (479)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~---------------------- 190 (479)
+|++++|.........+..+++|++|+++++ .+....+..+..+++|+ .|+++++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 7777665443322233333555555555552 23322222233333333 2222222
Q ss_pred -----------------------------------------------------CCChHHHHHhhcCCCCCEEEecCCCCC
Q 011688 191 -----------------------------------------------------KVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (479)
Q Consensus 191 -----------------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~ 217 (479)
.+....+..+..+++|++|+++++.+.
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 222111222334445555555555444
Q ss_pred HHHHHHhhCCCCCcEEEccCCCCCchhhHh-------------------------hhCCCCCCEEeccCCCCChHH--HH
Q 011688 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEK-------------------------FSRLTNLESLNLDSCGIGDEG--LV 270 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~~~~~--~~ 270 (479)
. .|..+..+++|++|++++|.+....+.. +..+++|+.|++++|.+.... +.
T Consensus 292 ~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 E-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp C-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred C-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 2 2333444445555555544444433333 445556666666665554432 33
Q ss_pred HHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCCCCCcEEecCCCCCCHHHHHHHhcCCC
Q 011688 271 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTG 349 (479)
Q Consensus 271 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 349 (479)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 45566777777777776655555666777778888887776654333 23667889999999999887777777888999
Q ss_pred CCEEEcCCCccchhH---HHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCee
Q 011688 350 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426 (479)
Q Consensus 350 L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 426 (479)
|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+....+..+.++++| .|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EE
Confidence 999999999987632 245788999999999999999988888999999999999999 8999899999999999 99
Q ss_pred ecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 427 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
++++|.++...+..+..+++|+.|++++|+++.
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999999999888888889999999999998864
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-43 Score=358.57 Aligned_cols=416 Identities=21% Similarity=0.172 Sum_probs=233.2
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
+++.+.+..+....... ...+++|++|++++|.+....+. +.++++|++|++++| .+....+..+..+++|++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEE
T ss_pred CCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEE
Confidence 56677666553211100 14577888888888877665544 788888888888884 5666667778888888888
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccC-CCCCcEEeccCCCCCCccccccccCCCCCcEEEcccC
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 190 (479)
++++|.. ....|.. .+++|++|++++|......+..+.. +++|++|+++++. +.+..+..+.++++|+.|++++|
T Consensus 253 ~Ls~n~l-~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 253 NISSNQF-VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp ECCSSCC-EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCcc-cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCC
Confidence 8887763 2222211 4555555555554433333333333 2444555444422 22222333444444444444444
Q ss_pred CCChHH-HHHhhcCCCCCEEEecCC---------------------------------------------------CCCH
Q 011688 191 KVTDSG-IAYLKGLQKLTLLNLEGC---------------------------------------------------PVTA 218 (479)
Q Consensus 191 ~~~~~~-~~~l~~l~~L~~L~l~~~---------------------------------------------------~~~~ 218 (479)
.+.+.. ...+..+++|++|++++| .+..
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 333111 112333334444433333 3332
Q ss_pred HHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcC
Q 011688 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 298 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 298 (479)
..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 33334444455555555555444444444555555555555555554444444555556666666666555555555555
Q ss_pred CCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHh-----------
Q 011688 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY----------- 367 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------- 367 (479)
+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 666666666666655555555556666666666666665544455556666666666666554222111
Q ss_pred -----------------------------------------------------------hhcCCCCcEEEecCCCCCchh
Q 011688 368 -----------------------------------------------------------LRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 368 -----------------------------------------------------------~~~~~~L~~L~l~~~~~~~~~ 388 (479)
+..+++|+.|++++|.+++..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 122355666666666666666
Q ss_pred HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+..+..+++|+.|++++| .+.+.+|..++++++|+.|++++|++++..|..+..++.|++|++++|+++
T Consensus 649 p~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 666666777777777777 666666666777777777777777777666666667777777777777654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-42 Score=349.93 Aligned_cols=415 Identities=20% Similarity=0.197 Sum_probs=264.3
Q ss_pred HhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCC
Q 011688 53 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
...+++|++|+++++.+.+.. .+..+++|++|++++| .+....+. ++.+++|++|++++|. ++...+..++++++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTE 248 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSS
T ss_pred hccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCC
Confidence 456899999999999876543 3488999999999996 45554444 8899999999999998 56678999999999
Q ss_pred CcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccC-CCCCcEEEcccCCCChHHHHHhhcCCCCCEEEe
Q 011688 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (479)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (479)
|++|++++|......+.. .+++|++|+++++. +.+..+..+.. +++|+.|++++|.+.+..+..++.+++|++|++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 999999998655444433 78999999999854 44344455554 599999999999988777788999999999999
Q ss_pred cCCCCCHHHH-HHhhCCCCCcEEEccCCCCCchhhHhhhC---------------------------CCCCCEEeccCCC
Q 011688 212 EGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSR---------------------------LTNLESLNLDSCG 263 (479)
Q Consensus 212 ~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~ 263 (479)
++|.+....| ..+..+++|++|++++|.+....+..+.. +++|+.|++++|.
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 9998764334 34788888888888888655333332322 2334444444444
Q ss_pred CChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecC-----------
Q 011688 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD----------- 332 (479)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~----------- 332 (479)
+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 333333445555566666666655544444444445555555555554443333344444444444444
Q ss_pred -------------CCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHh--------
Q 011688 333 -------------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH-------- 391 (479)
Q Consensus 333 -------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------- 391 (479)
+|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 44444333334444444444444444444444444444555555555554443221111
Q ss_pred --------------------------------------------------------------hhhcCCCCEEEcCCCCCC
Q 011688 392 --------------------------------------------------------------IKDLSSLTLLNLSQNCNL 409 (479)
Q Consensus 392 --------------------------------------------------------------l~~~~~L~~L~l~~~~~~ 409 (479)
+..+++|+.|++++| .+
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l 644 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-ML 644 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CC
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cc
Confidence 111345556666666 55
Q ss_pred CHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCCCccccCC
Q 011688 410 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 410 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
.+.+|..++.+++|+.|++++|.+++..|..+..+++|+.|++++|+++...-..+ ..++.|+.|++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~l 711 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDL 711 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEEEC
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEEC
Confidence 55566667777777777777777776666777777777777777776664322222 25566665544
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-40 Score=330.84 Aligned_cols=180 Identities=23% Similarity=0.304 Sum_probs=119.1
Q ss_pred cCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCC--HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 297 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
.++++|+.|++++|.+.......+..+++|++|++++|.+. +..+..+..+++|+.|++++|.++...+..+.++++|
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 33444444444444333333333444455555555554443 1223445677788888888888887777777788888
Q ss_pred cEEEecCCCCCchhHH--------hhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCc
Q 011688 375 RSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 446 (479)
+.|++++|.+...... .+..+++|++|++++| .+....+..+.++++|+.|++++|.++.+++..+..+++
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 8888888887664322 2567788888888888 777655566788888999999888888877777788888
Q ss_pred cceecccccccCHHHHHHHHhccCCCccccCC
Q 011688 447 LRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 447 L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
|+.|++++|+++......+. ..+++|+.+++
T Consensus 586 L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l~l 616 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFG-PAFRNLTELDM 616 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHH-HHHTTCSEEEC
T ss_pred CCEEECCCCcCCccChhHhc-ccccccCEEEc
Confidence 99999999988765444332 24566666554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-40 Score=328.56 Aligned_cols=396 Identities=23% Similarity=0.225 Sum_probs=220.7
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|+++++.++......|.++++|++|++++| .+....+..|..+++|++|++++|. +....|..|+++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence 356888888888777776667788888888888874 5666666677778888888888776 44555677778888888
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCc-cccccccCCCCCcEEEcccCCCChHHHHHhh---cC--------
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK---GL-------- 203 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~l-------- 203 (479)
|++++|......+..++++++|++|+++++. +.. ..+..+.++++|+.|++++|.++...+..++ ++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 8888776555454567777888888887744 332 2355677778888888877766543322221 11
Q ss_pred ----------------CCCCEEEecCCCCCH-HHHHHhhC----------------------------------------
Q 011688 204 ----------------QKLTLLNLEGCPVTA-ACLDSLSA---------------------------------------- 226 (479)
Q Consensus 204 ----------------~~L~~L~l~~~~~~~-~~~~~l~~---------------------------------------- 226 (479)
.+|+.|+++++.+.. ..+..+..
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 246666666665431 12222222
Q ss_pred --------------------------------------CCCCcEEEccCCCCCchhhH--------------------hh
Q 011688 227 --------------------------------------LGSLFYLNLNRCQLSDDGCE--------------------KF 248 (479)
Q Consensus 227 --------------------------------------~~~L~~L~l~~~~~~~~~~~--------------------~~ 248 (479)
+++|+.|++++|.+... +. .+
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~l-p~~~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-PTLDLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSC-CCCCCSSCCEEEEESCSSCEECCC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccc-ccCCCCccceeeccCCcCccchhh
Confidence 22344444444433211 11 11
Q ss_pred hCCCCCCEEeccCCCCChHH--HHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCCCC
Q 011688 249 SRLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSS 325 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~ 325 (479)
..+++|+.|++++|.+.... +..+..+++|++|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 12233333333333322211 223344444444444444433211 333444555555555554433322 34445555
Q ss_pred CcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchh-HHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcC
Q 011688 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 404 (479)
|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 66666665555544444455556666666666655542 34445555666666666666655555555556666666666
Q ss_pred CCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCC-ccceecccccccC
Q 011688 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT 458 (479)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 458 (479)
+| .+....|..+.++++|++|++++|+++.++ ..+..++ +|+.|++++|++.
T Consensus 506 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 506 HN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEE-SCGGGSCTTCCEEECCSCCCC
T ss_pred CC-cCCCcCHHHccCCCcCCEEECCCCcCcccC-HhHhhhcccCcEEEccCCCcc
Confidence 66 555555555556666666666666655432 2344454 3666666666554
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-39 Score=326.68 Aligned_cols=418 Identities=22% Similarity=0.190 Sum_probs=227.9
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++......|.++++|++|+++++ .+....+..++.+++|++|++++|. +....+..|+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEE
Confidence 45677777776666655555666677777777663 4555555666666777777776665 333333456666677777
Q ss_pred EccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhh--cCCCCCEEEecCC
Q 011688 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK--GLQKLTLLNLEGC 214 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~ 214 (479)
++++|......+..+.++++|++|+++++ .+....+..+.++++|+.|++++|.++...+..+. .+++|+.|+++++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 77665544333455666667777776663 34444445556666666666666666554444332 3456666666665
Q ss_pred CCCHHHHHHhhC---------------------------CCCCcEEEccCCCCCchhhHhhhCCC--CCCEEeccCCCCC
Q 011688 215 PVTAACLDSLSA---------------------------LGSLFYLNLNRCQLSDDGCEKFSRLT--NLESLNLDSCGIG 265 (479)
Q Consensus 215 ~~~~~~~~~l~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~ 265 (479)
.+....+..+.. .++|+.|+++++.+....+..+..++ +|+.|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 444332222221 13444455554444443333333332 2555555555444
Q ss_pred hHHHHHHhcCCCCCEEeccCcccChhhhH---------------------------------hhcCCCCCCEEEccCCCC
Q 011688 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLR---------------------------------HLSGLTNLESINLSFTGI 312 (479)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------------------~~~~~~~L~~L~l~~~~~ 312 (479)
...+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 43333344455555555555444333332 334556666666666655
Q ss_pred ChHHHHHhhCCCCCcEEecCCCC----------------------------CCHHHHHHHhcCCCCCEEEcCCCccchh-
Q 011688 313 SDGSLRKLAGLSSLKSLNLDARQ----------------------------ITDTGLAALTSLTGLTHLDLFGARITDS- 363 (479)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 363 (479)
....+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+.
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 55444455555666666655442 2222222233344444444444444321
Q ss_pred HHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC--HHHHHHHhcCCCCCeeecCCCccCHHHHHcc
Q 011688 364 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT--DKTLELISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 441 (479)
+...+.++++|++|++++|.+.+..+..+..+++|+.|++++| .+. ...|..+..+++|+.|++++|.+..+++..+
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 1233344444455555444444443444445555555555555 332 2345567778888888888888888777778
Q ss_pred cCCCccceecccccccCHHHHHHHH------hccCCCccccCC
Q 011688 442 KPLKNLRSLTLESCKVTANDIKRLQ------SRDLPNLVSFRP 478 (479)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~~~l~------~~~~~~l~~l~~ 478 (479)
..+++|++|++++|+++...-..+. -..+++|+.|++
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 8888888999988887653211110 135677777655
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-38 Score=307.06 Aligned_cols=398 Identities=21% Similarity=0.207 Sum_probs=255.4
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|+++++.++...+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....+..++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 367999999999888777778899999999999984 6777777788899999999999987 45666777899999999
Q ss_pred EEccCccccc-cccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCC
Q 011688 136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (479)
Q Consensus 136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (479)
|++++|.... ..+..+..+++|++|+++++..+.......+.++++|+.|+++++.+.+..+..++.+++|++|+++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999876543 345678889999999999866566655567888899999999998888777777888888888888888
Q ss_pred CCCHHHHHHhhCCCCCcEEEccCCCCCchh---hHhhhCCCCCCEEeccCCCCChHHHHHH-------------------
Q 011688 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSRLTNLESLNLDSCGIGDEGLVNL------------------- 272 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------- 272 (479)
.........+..+++|+.|++++|.+.... ......+++|+.|++.++.+.+..+..+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 776654444566788888888887765421 0111123344444444333322222111
Q ss_pred --------------------------------------------hcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 273 --------------------------------------------TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 273 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
...++|+.+++++|.+.......+..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 111233333333333322222222345555555555
Q ss_pred CCCCChHHHHH---hhCCCCCcEEecCCCCCCHHHH--HHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCC
Q 011688 309 FTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 309 ~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
+|.+.+..+.. ++.+++|++|++++|.+..... ..+..+++|++|++++|+++.. +..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence 55555433222 3445555555555555544332 2344555555555555555432 2223334444444444444
Q ss_pred CCchhHH-----------------hhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCc
Q 011688 384 LTDAGVK-----------------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446 (479)
Q Consensus 384 ~~~~~~~-----------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 446 (479)
+...... .+..+++|++|++++| .+.. +|. ...+++|+.|++++|+++...+..+..+++
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKT-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSS-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCc-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 4322110 0135678888888888 6664 333 356788888888888888877777778888
Q ss_pred cceecccccccCH
Q 011688 447 LRSLTLESCKVTA 459 (479)
Q Consensus 447 L~~L~l~~~~~~~ 459 (479)
|+.|++++|+++.
T Consensus 499 L~~L~l~~N~~~~ 511 (549)
T 2z81_A 499 LQKIWLHTNPWDC 511 (549)
T ss_dssp CCEEECCSSCBCC
T ss_pred cCEEEecCCCccC
Confidence 8888888887754
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=327.01 Aligned_cols=397 Identities=23% Similarity=0.272 Sum_probs=235.0
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|+++++.++......|..+++|++|++++| .+....+..|+.+++|++|++++|. ++...+..|+.+++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence 346888888888877776667888888888888875 5666666677788888888888876 44555567778888888
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCc-cccccccCCCCCcEEEcccCCCChHHHHHhhcCCCC----CEEE
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLN 210 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~ 210 (479)
|++++|.........++.+++|++|+++++. +.. ..+..+.++++|+.|+++++.+....+..++.+++| +.++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 8888765443333457778888888888743 333 235667778888888888877765544444444444 5566
Q ss_pred ecCCCCCHHHHHH-------------------------------------------------------------------
Q 011688 211 LEGCPVTAACLDS------------------------------------------------------------------- 223 (479)
Q Consensus 211 l~~~~~~~~~~~~------------------------------------------------------------------- 223 (479)
++++.+....+..
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 6555443322222
Q ss_pred --------------hhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHH-----------------
Q 011688 224 --------------LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNL----------------- 272 (479)
Q Consensus 224 --------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------- 272 (479)
+..+++|+.|+++++.+.. .+..+..+ +|+.|++++|.+.......+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 2233455555555554442 22333344 66666666664432111000
Q ss_pred --hcCCCCCEEeccCcccChhh--hHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHH-HHHhcC
Q 011688 273 --TGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSL 347 (479)
Q Consensus 273 --~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 347 (479)
..+++|+.|++++|.+.... +..+..+++|+.|++++|.+...... +..+++|++|++++|.+....+ ..+..+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 12334444444444433222 23344455555555555544332222 4445555555555554433322 234456
Q ss_pred CCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC-chhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCee
Q 011688 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 426 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 426 (479)
++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+..+++|++|++++| .+....+..+..+++|++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEE
Confidence 66666666666665555555566666666666666654 233455566667777777776 5666556666667777777
Q ss_pred ecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 427 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 427 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
++++|.+...++..+..+++|++|++++|+++.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 777776666655566666777777777776553
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-40 Score=329.48 Aligned_cols=399 Identities=17% Similarity=0.163 Sum_probs=279.2
Q ss_pred HHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCC-----------------------------------
Q 011688 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ----------------------------------- 93 (479)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------------------------------- 93 (479)
.++.|....+++.|+++++.+.+..+..++++++|++|+++++..
T Consensus 73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~ 152 (636)
T 4eco_A 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152 (636)
T ss_dssp TTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCC
T ss_pred CCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhcc
Confidence 555554447899999999999988888999999999999998631
Q ss_pred ------------------------------------------CChhHHHHhhCCCCCcEEEcCCCCcccHH---------
Q 011688 94 ------------------------------------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQ--------- 122 (479)
Q Consensus 94 ------------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------- 122 (479)
++. .+..++++++|++|++++|. ++..
T Consensus 153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~ 230 (636)
T 4eco_A 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENE 230 (636)
T ss_dssp CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCT
T ss_pred CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-ccccccccccccc
Confidence 112 33456677777777777776 3442
Q ss_pred --------HHHHHh--CCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCc-cccccccCC------CCCcEE
Q 011688 123 --------GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL------TNLKSL 185 (479)
Q Consensus 123 --------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~------~~L~~L 185 (479)
.|..++ ++++|++|++++|......|..+.++++|++|+++++..+++ ..+..+..+ ++|+.|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 566666 777777777777666666666777777777777777443554 334444443 677777
Q ss_pred EcccCCCChHHHH--HhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCC-CCEEeccCC
Q 011688 186 QISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN-LESLNLDSC 262 (479)
Q Consensus 186 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 262 (479)
++++|.++ ..+. .++.+++|+.|++++|.+.+..| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 77777766 3333 56777777777777777664445 6666677777777777665 33445666777 888888887
Q ss_pred CCChHHHHHHhcC--CCCCEEeccCcccChhhhHhhc-------CCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCC
Q 011688 263 GIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 263 ~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
.+. ..+..+... ++|+.|++++|.+....+..+. .+++|+.|++++|.+.......+..+++|++|++++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 765 223333333 3788888888877766655555 667888888888887765555566688888888888
Q ss_pred CCCCHHHHHHHhcC-------CCCCEEEcCCCccchhHHHhhh--cCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcC
Q 011688 334 RQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404 (479)
Q Consensus 334 ~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 404 (479)
|.+...+...+... ++|++|++++|.++..+ ..+. .+++|+.|++++|.+.+ .+..+..+++|++|+++
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 88774433333222 27888888888888544 3443 78888888888888887 46667788888888885
Q ss_pred C------CCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 405 Q------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 405 ~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+ | .+....|..+..+++|++|++++|.+..+ |..+. ++|+.|++++|++..
T Consensus 545 ~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 545 NQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCE
T ss_pred CCcccccC-cccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCcc
Confidence 4 4 45666777788888899999998888554 33333 788899999987765
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=332.16 Aligned_cols=397 Identities=22% Similarity=0.214 Sum_probs=242.5
Q ss_pred cCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCc
Q 011688 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (479)
..+++++|++++|.++...+..|.++++|++|++++|..+....+..|+.+++|++|++++|. +....|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 357899999999999888888899999999999999756666667789999999999999997 4566788899999999
Q ss_pred EEEccCcccccccccc--ccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcC--CC-----
Q 011688 135 KLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QK----- 205 (479)
Q Consensus 135 ~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~----- 205 (479)
+|++++|......+.. +..+++|++|+++++..........+.++++|+.|++++|.+....+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999998655444443 88999999999998553332233568899999999999988765433333332 34
Q ss_pred -------------------------CCEEEecCCCCCHHHHHHhh-----------------------------------
Q 011688 206 -------------------------LTLLNLEGCPVTAACLDSLS----------------------------------- 225 (479)
Q Consensus 206 -------------------------L~~L~l~~~~~~~~~~~~l~----------------------------------- 225 (479)
|+.|+++++.+....+..+.
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 45555554433221111111
Q ss_pred -C--CCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCC
Q 011688 226 -A--LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 302 (479)
Q Consensus 226 -~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (479)
. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 0 1355556665555555444555556666666666665555444455566666666666666554444555566666
Q ss_pred CEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchh-------------------
Q 011688 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS------------------- 363 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------- 363 (479)
+.|++++|.+.......+..+++|++|++++|.+.... .+++|+.+.+++|+++..
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~ 415 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence 66666666555444444555666666666665544321 133333333333332211
Q ss_pred -H-HHhhhcCCCCcEEEecCCCCCchhHH-hhhhcCCCCEEEcCCCCCCC-----HHHHHHHhcCCCCCeeecCCCccCH
Q 011688 364 -G-AAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLT-----DKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 364 -~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
. ...+..+++|+.|++++|.+.+.... .+..+++|++|++++| .+. ...+..+.++++|+.|++++|.++.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcccc
Confidence 1 11233556666666666665543221 1223455555555555 332 1112234455566666666666665
Q ss_pred HHHHcccCCCccceecccccccC
Q 011688 436 AGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 436 ~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
..+..+..+++|++|++++|+++
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCS
T ss_pred cChhHccchhhhheeECCCCCCC
Confidence 55555556666666666666554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=320.82 Aligned_cols=395 Identities=20% Similarity=0.189 Sum_probs=296.4
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
.++.+.++++. +..... .....+++|++|+++++.++...+..|.++++|++|+++++ .+....+..|+.+++|++|
T Consensus 29 ~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 29 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCCEEECCSCC-CCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCc-cCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 45666666553 221111 11234788999999998888777777888999999999884 5777666788888899999
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCccccc-cccccccCCCCCcEEeccCCCCCCccccccccCCCCC----cEEE
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQ 186 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~ 186 (479)
+++++.. ....+..++++++|++|++++|.... ..+..+.++++|++|+++++ .+....+..+..+++| +.++
T Consensus 106 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccc-ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcc
Confidence 9988863 33333347888899999998876544 34677888888888888874 3444444444444444 4444
Q ss_pred cccCCCChH-----------------------------------------------------------------------
Q 011688 187 ISCSKVTDS----------------------------------------------------------------------- 195 (479)
Q Consensus 187 l~~~~~~~~----------------------------------------------------------------------- 195 (479)
++++.+...
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 444333211
Q ss_pred ----------HHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhh-----------------
Q 011688 196 ----------GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF----------------- 248 (479)
Q Consensus 196 ----------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----------------- 248 (479)
.+..+..+++|+.|+++++.+.. .+..+..+ +|+.|++++|.+.......+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 11234556789999999887664 35566677 99999999987764322111
Q ss_pred --hCCCCCCEEeccCCCCChHH--HHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCC
Q 011688 249 --SRLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGL 323 (479)
Q Consensus 249 --~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 323 (479)
..+++|+.|++++|.+.... +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ ..+..+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 35688999999988776543 45678899999999999988665544 7889999999999997765433 456789
Q ss_pred CCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccc-hhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEE
Q 011688 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 402 (479)
++|++|++++|.+....+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 99999999999988776677888999999999999987 34556778899999999999999998788899999999999
Q ss_pred cCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 403 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 403 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
+++| .+....+..+.++++|+.|++++|++..
T Consensus 501 l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 501 MASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 9999 8888777788899999999999998765
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-39 Score=319.09 Aligned_cols=409 Identities=21% Similarity=0.237 Sum_probs=269.9
Q ss_pred eeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEc
Q 011688 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
-++++.++..++.... .+ .+++++|++++ +.+....+..|.++++|++|++++|. ++...+..|+++++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~-~~--~~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD-DI--PSSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSCCT-TS--CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccCCC-CC--CCCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeEC
Confidence 3568888877765432 22 27899999999 57888777789999999999999997 56666788999999999999
Q ss_pred cCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChH-HHHHhhcCCCCCEEEecCCCCC
Q 011688 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVT 217 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 217 (479)
++|......+..+.++++|++|+++++ .+....+..+.++++|++|++++|.+... .+..++++++|++|+++++.+.
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 998766666888999999999999995 45555656789999999999999998753 3678899999999999999877
Q ss_pred HHHHHHhhCCCC----CcEEEccCCCCCchhhHhh---------------------------------------------
Q 011688 218 AACLDSLSALGS----LFYLNLNRCQLSDDGCEKF--------------------------------------------- 248 (479)
Q Consensus 218 ~~~~~~l~~~~~----L~~L~l~~~~~~~~~~~~~--------------------------------------------- 248 (479)
...+..+..+.+ +..+++++|.+....+..+
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 654433332222 2244444443332221111
Q ss_pred ---------------------------------------------------------hCCCCCCEEeccCCCCChHHH--
Q 011688 249 ---------------------------------------------------------SRLTNLESLNLDSCGIGDEGL-- 269 (479)
Q Consensus 249 ---------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~-- 269 (479)
..+++|+.|++++|.+.....
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~ 326 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCC
Confidence 112233333333333211100
Q ss_pred -----------------HHHhcCCCCCEEeccCcccChhh--hHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEe
Q 011688 270 -----------------VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 330 (479)
Q Consensus 270 -----------------~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 330 (479)
..+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.... ..+..+++|++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLD 405 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEE
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeE
Confidence 00112233333334333332221 233444455555555555443322 3344556666666
Q ss_pred cCCCCCCHHHH-HHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCch-hHHhhhhcCCCCEEEcCCCCC
Q 011688 331 LDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCN 408 (479)
Q Consensus 331 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~ 408 (479)
+++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++| .
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~ 484 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-Q 484 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-C
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-c
Confidence 66665544433 3455677777777777777666666677777888888887777652 4556677788888888888 7
Q ss_pred CCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCC-CccccCC
Q 011688 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP 478 (479)
Q Consensus 409 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~-~l~~l~~ 478 (479)
+....+..+.++++|++|++++|++....+..+..+++|++|++++|+++..... + ..+| +|+.+++
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~--~~l~~~L~~l~l 552 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L--QHFPKSLAFFNL 552 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G--GGSCTTCCEEEC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H--hhhcccCcEEEc
Confidence 7776777777888888888888888887777788888888888888877742222 1 2454 4666554
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.9e-39 Score=320.80 Aligned_cols=400 Identities=17% Similarity=0.167 Sum_probs=283.9
Q ss_pred HHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChh-------------------------------
Q 011688 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG------------------------------- 97 (479)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------------- 97 (479)
.++.|....+++.|+|+++++.+..+..++++++|++|+|++++.+...
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~ 394 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence 4444443468999999999999888899999999999999333322111
Q ss_pred ---------------------------------------------HHHHhhCCCCCcEEEcCCCCcccH-----------
Q 011688 98 ---------------------------------------------GLEHLRGLSNLTSLSFRRNNAITA----------- 121 (479)
Q Consensus 98 ---------------------------------------------~~~~~~~~~~L~~L~l~~~~~~~~----------- 121 (479)
.+..++++++|++|++++|. ++.
T Consensus 395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDAN 473 (876)
T ss_dssp CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTT
T ss_pred CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccc
Confidence 34457777888888888877 344
Q ss_pred ------HHHHHHh--CCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCc-ccccc-------ccCCCCCcEE
Q 011688 122 ------QGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKP-------LSGLTNLKSL 185 (479)
Q Consensus 122 ------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~-------~~~~~~L~~L 185 (479)
..|..++ ++++|++|++++|......|..+.++++|++|+++++..+++ ..+.. +..+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 3666665 788888888888766666777778888888888887543554 23332 3344588888
Q ss_pred EcccCCCChHHHH--HhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCC-CCEEeccCC
Q 011688 186 QISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTN-LESLNLDSC 262 (479)
Q Consensus 186 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 262 (479)
++++|.+.. .+. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 554 ~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 888887773 333 6777888888888888777 334 6777788888888888777 44455667777 888888888
Q ss_pred CCChHHHHHHhcC--CCCCEEeccCcccChhhhHh---hc--CCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCC
Q 011688 263 GIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLRH---LS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 335 (479)
Q Consensus 263 ~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (479)
.+. ..+..+... ++|+.|++++|.+....+.. +. .+++|+.|++++|.+.......+..+++|+.|++++|.
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 766 223333333 34888888888775533211 11 34578889998888876555556678899999999888
Q ss_pred CCHHHHHHHh-------cCCCCCEEEcCCCccchhHHHhhh--cCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 336 ITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 336 ~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+...+...+. ++++|+.|++++|.++..+ ..+. .+++|+.|++++|.+.+. +..+..+++|+.|+|++|
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCC
Confidence 7754433222 1238899999999888554 4444 788999999999988874 666778899999999763
Q ss_pred C-----CCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 407 C-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 407 ~-----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
. .+....|..+..+++|+.|++++|.+..+ |..+. ++|+.|++++|++..
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCc
Confidence 1 56666777888899999999999988554 33433 689999999998765
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=295.28 Aligned_cols=387 Identities=16% Similarity=0.147 Sum_probs=286.9
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.+....+..|.++++|++|++++| .+....+..|+.+++|++|++++|.. +. .|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-VK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-CE-EECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-ee-cCcc--ccCCccEE
Confidence 67999999999888777777888999999999984 67777778888899999999999874 32 3333 78899999
Q ss_pred EccCccccc-cccccccCCCCCcEEeccCCCCCCccccccccCCCCC--cEEEcccCCC--ChHHHHHhhc---------
Q 011688 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG--------- 202 (479)
Q Consensus 137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~~--------- 202 (479)
++++|.... ..+..++.+++|++|+++++. +.. ..+..+++| +.|++++|.+ ....+..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999876554 345778888999999998843 443 345666777 9999888877 3333333333
Q ss_pred -----------------CCCCCEEEecCCC-------CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhh---hCCCCCC
Q 011688 203 -----------------LQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SRLTNLE 255 (479)
Q Consensus 203 -----------------l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~ 255 (479)
+++|+.++++++. +.... ..+..+++|+.|++.++.+.......+ ...++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 5567777777664 33333 367778888888888776654332211 1246888
Q ss_pred EEeccCCCCChHHHHHH-----hcCC--------------------------CCCEEeccCcccChhhhHhhcCCCCCCE
Q 011688 256 SLNLDSCGIGDEGLVNL-----TGLC--------------------------NLKCLELSDTQVGSSGLRHLSGLTNLES 304 (479)
Q Consensus 256 ~L~l~~~~~~~~~~~~~-----~~~~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (479)
.|++++|.+.+..+..+ ..++ +|+.|+++++.+.... .+..+++|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 88888775442222222 2333 3555555554443221 1257889999
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHH--HHHHHhcCCCCCEEEcCCCccch-hHHHhhhcCCCCcEEEecC
Q 011688 305 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 381 (479)
|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.. .+...+..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 99999999887777888899999999999999863 34668899999999999999987 5555577889999999999
Q ss_pred CCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
|.+++..+..+. ++|++|++++| .+.. +|..+..+++|++|++++|++..++...+..+++|++|++++|+++.
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999876555443 79999999999 7874 66666699999999999999998665568889999999999999875
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6.9e-34 Score=272.62 Aligned_cols=396 Identities=24% Similarity=0.338 Sum_probs=262.3
Q ss_pred CCCeeEEEeeCCCCCcchhhc-ccCCCCCCEEecCCCCCCChhH----HHHhhCCCCCcEEEcCCCCcccHHHHHHHh-C
Q 011688 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAFA-G 129 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~ 129 (479)
.+++++|+++++++++..+.. +..+++|++|++++| .+.+.. +..+..+++|++|++++|. +.+..+..+. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 356888888888877666555 778888888888886 466543 3455677888888888876 4454444443 3
Q ss_pred CC----CCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhh----
Q 011688 130 LI----NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK---- 201 (479)
Q Consensus 130 l~----~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---- 201 (479)
++ +|++|++++|....... ...+..+..+++|+.|++++|.+....+..+.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~---------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGC---------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGH---------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred HhhCCCceeEEEccCCCCCHHHH---------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 44 46666666654322110 01123344455555555555555443333222
Q ss_pred -cCCCCCEEEecCCCCCHH----HHHHhhCCCCCcEEEccCCCCCchhhHhhh-----CCCCCCEEeccCCCCChH----
Q 011688 202 -GLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----RLTNLESLNLDSCGIGDE---- 267 (479)
Q Consensus 202 -~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~---- 267 (479)
..++|++|++++|.+... .+..+..+++|++|++++|.+.......+. ..++|+.|++++|.++..
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 134566666666655542 234445566777777776665544333332 245777777777766653
Q ss_pred HHHHHhcCCCCCEEeccCcccChhhhHh-----hcCCCCCCEEEccCCCCChHH----HHHhhCCCCCcEEecCCCCCCH
Q 011688 268 GLVNLTGLCNLKCLELSDTQVGSSGLRH-----LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITD 338 (479)
Q Consensus 268 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 338 (479)
.+..+..+++|++|++++|.+....... +..+++|++|++++|.++... +..+..+++|++|++++|.+.+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 2445566788888888887765544322 235788999999988888753 4445568999999999998877
Q ss_pred HHHHHHhc-----CCCCCEEEcCCCccchhH----HHhhhcCCCCcEEEecCCCCCchhHHhhhh-----cCCCCEEEcC
Q 011688 339 TGLAALTS-----LTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLS 404 (479)
Q Consensus 339 ~~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~ 404 (479)
.....+.. .++|++|++++|.++... +..+..+++|++|++++|.+.+.++..+.. .++|++|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 66554442 368999999999888653 445567899999999999988776665543 5799999999
Q ss_pred CCCCCCH----HHHHHHhcCCCCCeeecCCCccCHHHHHccc-----CCCccceecccccccCH---HHHHHHHhccCCC
Q 011688 405 QNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTA---NDIKRLQSRDLPN 472 (479)
Q Consensus 405 ~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~---~~~~~l~~~~~~~ 472 (479)
+| .+.+ ..+..+..+++|++|++++|++...+...+. ..+.|+.|.+.++.+.. ..++.+. ...|+
T Consensus 379 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~~p~ 456 (461)
T 1z7x_W 379 DC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KDKPS 456 (461)
T ss_dssp TS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HHCTT
T ss_pred CC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-ccCCC
Confidence 99 8886 6778888899999999999999887664432 23467777777776654 4455554 67888
Q ss_pred cccc
Q 011688 473 LVSF 476 (479)
Q Consensus 473 l~~l 476 (479)
++.+
T Consensus 457 l~i~ 460 (461)
T 1z7x_W 457 LRVI 460 (461)
T ss_dssp SEEE
T ss_pred cEee
Confidence 8754
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-38 Score=319.36 Aligned_cols=394 Identities=21% Similarity=0.174 Sum_probs=261.1
Q ss_pred cCCCeeEEEeeCCCC-CcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHH--HhCCC
Q 011688 55 QGSSLLSVDLSGSDV-TDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA--FAGLI 131 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~l~ 131 (479)
.+++|+.|+++++.. ....+..|.++++|++|++++| .+....+..|+.+++|++|++++|.. ....+.. +++++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCC-CcccccCccccccC
Confidence 456677777777633 2333455677777777777763 45655566667777777777777653 3222222 56677
Q ss_pred CCcEEEccCcccccccc-ccccCCCCCcEEeccCCCCCCccc--------------------------cccccCCC----
Q 011688 132 NLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSD--------------------------MKPLSGLT---- 180 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~~~~~~~---- 180 (479)
+|++|++++|......+ ..++++++|++|+++++. +.... +..+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 77777777665433322 356666777777766632 22211 11222223
Q ss_pred --CCcEEEcccCCCChHHHHHh------------------------------------hc--CCCCCEEEecCCCCCHHH
Q 011688 181 --NLKSLQISCSKVTDSGIAYL------------------------------------KG--LQKLTLLNLEGCPVTAAC 220 (479)
Q Consensus 181 --~L~~L~l~~~~~~~~~~~~l------------------------------------~~--l~~L~~L~l~~~~~~~~~ 220 (479)
.|+.|++++|.+....+..+ .. .++|+.|+++++.+....
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 38888888875543222221 11 268999999999888776
Q ss_pred HHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCC
Q 011688 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 300 (479)
+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..++
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 77788999999999999999988778899999999999999988766666788999999999999998777777788899
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCC--------------------CCHH-HHHHHhcCCCCCEEEcCCCc
Q 011688 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ--------------------ITDT-GLAALTSLTGLTHLDLFGAR 359 (479)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------------------~~~~-~~~~~~~~~~L~~L~l~~~~ 359 (479)
+|+.|++++|.+... ..+++|+.|.+++|. +... ....+..+++|+.|++++|.
T Consensus 363 ~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 363 KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 999999999977642 224555555544443 3332 12334577888888888887
Q ss_pred cchhHHH-hhhcCCCCcEEEecCCCCCch-----hHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 360 ITDSGAA-YLRNFKNLRSLEICGGGLTDA-----GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 360 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
++..... .+..+++|+.|++++|.+... .+..+..+++|++|+|++| .+....+..+.++++|+.|++++|.+
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCC
Confidence 7754322 234467777777777776532 2234556677777777777 66665666666677777777777777
Q ss_pred CHHHHHcccCCCccceecccccccCH
Q 011688 434 TSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 434 ~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+..++..+. ++|+.|++++|+++.
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred CccChhhhh--ccccEEECCCCcCCC
Confidence 665554443 556666666665543
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-36 Score=288.88 Aligned_cols=365 Identities=20% Similarity=0.209 Sum_probs=182.0
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
+++++|+++++.++...+..|.++++|++|++++|.......+..|..+++|++|++++|. +....|..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEE
Confidence 4566666666666655555566666666666666432223334455666666666666665 333445555556666666
Q ss_pred EccCcccccccccc--ccCCCCCcEEeccCCCCCCcccccc-ccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecC
Q 011688 137 DLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (479)
Q Consensus 137 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 213 (479)
++++|......+.. +..+++|++|+++++. +....+.. +.++++|++|++++|.+....+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------- 177 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF---------- 177 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG----------
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcc----------
Confidence 66655432222222 4555555555555532 33222222 4445555555555554443333333222
Q ss_pred CCCCHHHHHHhhCCCCCcEEEccCCCCCchhhH--------hhhCCCCCCEEeccCCCCChHHHHHHhc---CCCCCEEe
Q 011688 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE--------KFSRLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLE 282 (479)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~ 282 (479)
...+++.++++++.+...... .+..+++|+.|++++|.+.+..+..+.. .++|+.++
T Consensus 178 ------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 178 ------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp ------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 013444555555444332211 1224466777777777776665555443 26777777
Q ss_pred ccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch
Q 011688 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (479)
++++......... ..++.+.. ..+ .. ...++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 246 l~~~~~~~~~~~~-~~~~~~~~-----~~~-----~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 246 LSNSYNMGSSFGH-TNFKDPDN-----FTF-----KG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp CTTCTTTSCCTTC-CSSCCCCT-----TTT-----GG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred eccccccccccch-hhhccCcc-----ccc-----cc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 7765432211100 00000000 000 00 012455555555555544444444455555555555555555
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHccc
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 442 (479)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+....+..+.++++|++|++++|+++..++..+.
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 44444555555555555555555544455555555555555555 45554455555555555555555555554444455
Q ss_pred CCCccceecccccccC
Q 011688 443 PLKNLRSLTLESCKVT 458 (479)
Q Consensus 443 ~~~~L~~L~l~~~~~~ 458 (479)
.+++|++|++++|+++
T Consensus 393 ~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TCTTCCEEECCSSCBC
T ss_pred cCCcccEEEccCCCcc
Confidence 5555555555555544
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-37 Score=306.46 Aligned_cols=383 Identities=17% Similarity=0.191 Sum_probs=312.1
Q ss_pred CCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCc------------------------------------------
Q 011688 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------------------------------------------ 118 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------ 118 (479)
.+++.|+++++ .+....+..++.+++|++|++++|..
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 47999999994 67777788999999999999998842
Q ss_pred -----------------------------------ccHHHHHHHhCCCCCcEEEccCcccccc-----------------
Q 011688 119 -----------------------------------ITAQGMKAFAGLINLVKLDLERCTRIHG----------------- 146 (479)
Q Consensus 119 -----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 146 (479)
++. +|..++++++|++|++++|.....
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 122 566789999999999999764332
Q ss_pred cccccc--CCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC-CCh-HHHHHhhcC------CCCCEEEecCCCC
Q 011688 147 GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCPV 216 (479)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~ 216 (479)
.|..+. ++++|++|++++|. +....+..+.++++|+.|++++|. +++ ..+..++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788888 99999999999955 444566788999999999999998 887 677777766 9999999999998
Q ss_pred CHHHHH--HhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCC-CCEEeccCcccChhhh
Q 011688 217 TAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGL 293 (479)
Q Consensus 217 ~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 293 (479)
. ..|. .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 8 4566 89999999999999999885555 7888899999999999776 33445778888 999999999987 444
Q ss_pred HhhcCC--CCCCEEEccCCCCChHHHHHhh-------CCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhH
Q 011688 294 RHLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364 (479)
Q Consensus 294 ~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (479)
..+... ++|+.|++++|.+....+..+. .+++|++|++++|.+...+...+..+++|++|++++|.++..+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 455443 4899999999998876666666 6789999999999998776666777999999999999998665
Q ss_pred HHhhhcC-------CCCcEEEecCCCCCchhHHhhh--hcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeec------C
Q 011688 365 AAYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV------S 429 (479)
Q Consensus 365 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l------~ 429 (479)
...+... ++|+.|++++|.+... +..+. .+++|++|++++| .+.. +|..+..+++|+.|++ +
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred HHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 5444433 3999999999999864 45554 8999999999999 7887 6778889999999999 4
Q ss_pred CCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCCCccccCC
Q 011688 430 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 430 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
+|.+....|..+..+++|++|++++|+++.. ...-+++|+.|++
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~L 594 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKV-----NEKITPNISVLDI 594 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCTTCCEEEC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcCCcc-----CHhHhCcCCEEEC
Confidence 5677777778888999999999999998532 1122367777665
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4e-36 Score=294.55 Aligned_cols=408 Identities=19% Similarity=0.138 Sum_probs=287.2
Q ss_pred eeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEc
Q 011688 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (479)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (479)
....+.+++.++.... .+ .++|++|++++| .++...+..+..+++|++|++++|. +....+..|+.+++|++|++
T Consensus 7 ~~~c~~~~~~l~~ip~-~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPS-GL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TSEEECTTSCCSSCCS-CC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCccccccc-cC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEEC
Confidence 3345666666654432 22 379999999995 6887777789999999999999997 55666788999999999999
Q ss_pred cCccccccccccccCCCCCcEEeccCCCCCCc-cccccccCCCCCcEEEcccCC-CChHHHHHhhcCCCCCEEEecCCCC
Q 011688 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (479)
++|......+..++.+++|++|+++++. +.. ..+..+.++++|+.|++++|. +....+..+..+++|++|+++++.+
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9987665555669999999999999954 443 234578899999999999987 4544445788999999999999999
Q ss_pred CHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHH---HHHHhcCCCCCEEeccCcccChhhh
Q 011688 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG---LVNLTGLCNLKCLELSDTQVGSSGL 293 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (479)
....+..+..+++|+.|++.++.........+..+++|+.|++++|.+.+.. ......+++|+.+++.++.+.+..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 8877888999999999999999887665555567999999999999776431 1112346788999888877654333
Q ss_pred Hhh----cC-----------------------------------------------------------CCCCCEEEccCC
Q 011688 294 RHL----SG-----------------------------------------------------------LTNLESINLSFT 310 (479)
Q Consensus 294 ~~~----~~-----------------------------------------------------------~~~L~~L~l~~~ 310 (479)
..+ .. .++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 221 11 134555555555
Q ss_pred CCChHHHHHhhCCCCCcEEecCCCCCCHHHHHH---HhcCCCCCEEEcCCCccchhHH--HhhhcCCCCcEEEecCCCCC
Q 011688 311 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 385 (479)
.+.......+..+++|++|++++|.+.+..+.. ++.+++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 554433333456888999999988888765432 4577889999999988887653 45778889999999988887
Q ss_pred chhHHhhhhcCCCCEEEcCCCCCCCHHHHHH-----------------HhcCCCCCeeecCCCccCHHHHHcccCCCccc
Q 011688 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL-----------------ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448 (479)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 448 (479)
.. +..+..+++|++|++++| .+....... ...+++|++|++++|++..++. ...+++|+
T Consensus 401 ~l-p~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~ 476 (549)
T 2z81_A 401 PM-PDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLL 476 (549)
T ss_dssp CC-CSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCC
T ss_pred cC-ChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCC
Confidence 54 445556677777777777 444311100 1245566666666666654322 23456666
Q ss_pred eecccccccCHHHHHHHHhccCCCccccCC
Q 011688 449 SLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
.|++++|+++......+ ..+++|+.+++
T Consensus 477 ~L~Ls~N~l~~~~~~~~--~~l~~L~~L~l 504 (549)
T 2z81_A 477 VMKISRNQLKSVPDGIF--DRLTSLQKIWL 504 (549)
T ss_dssp EEECCSSCCCCCCTTGG--GGCTTCCEEEC
T ss_pred EEecCCCccCCcCHHHH--hcCcccCEEEe
Confidence 77777666654322222 25566665554
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=283.77 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=224.1
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCC-cchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 110 (479)
.++.+.++++. +....... ...+++|++|+++++.+. ......|..+++|++|++++| .+....+..++.+++|++
T Consensus 31 ~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 31 HVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCE
T ss_pred ccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCE
Confidence 46777777663 22211111 245889999999999876 344566999999999999995 677777888999999999
Q ss_pred EEcCCCCcccHHHHHH--HhCCCCCcEEEccCcccccccccc-ccCCCCCcEEeccCCCCCCccccccccCC--CCCcEE
Q 011688 111 LSFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKSL 185 (479)
Q Consensus 111 L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L 185 (479)
|++++|. ++...+.. +..+++|++|++++|......+.. +..+++|++|+++++. +....+..+..+ .+++.+
T Consensus 108 L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 108 LTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEE
T ss_pred EeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccccc
Confidence 9999998 45555555 889999999999998765555554 7899999999999854 555555555544 689999
Q ss_pred EcccCCCChHHHH--------HhhcCCCCCEEEecCCCCCHHHHHHhhCC---CCCcEEEccCCCCCchhhHhhhCCCCC
Q 011688 186 QISCSKVTDSGIA--------YLKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSRLTNL 254 (479)
Q Consensus 186 ~l~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L 254 (479)
+++++.+...... .+..+++|++|++++|.+....+..+... ++|+.|+++++........ ...+
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 261 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNF 261 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----CCSS
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc----hhhh
Confidence 9998877653221 12345678888888888777666665433 6777777776654332100 0000
Q ss_pred CEEeccCCCCChHHHHHHh--cCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecC
Q 011688 255 ESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (479)
..+ ....+. ..++|+.+++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 262 ~~~----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 262 KDP----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp CCC----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccC----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 000 000011 23566666666666655555555566666666666666555444455555555555555
Q ss_pred CCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 55555444444445555555555555555544444555555555555555555444444444555555555555
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-35 Score=297.64 Aligned_cols=382 Identities=16% Similarity=0.152 Sum_probs=301.8
Q ss_pred CCCCEEecCCCCCCChhHHHHhhCCCCCcEEEc-CCCCcccHH-------------------------------------
Q 011688 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 122 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~------------------------------------- 122 (479)
.++..|+|++ ..+....+..++.+++|++|+| +++. +...
T Consensus 323 ~~V~~L~Ls~-~~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAG-FGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTT-TCCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECcc-CCCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 5799999999 4677777889999999999999 5442 1111
Q ss_pred ---------------------------------------HHHHHhCCCCCcEEEccCccccc-----------------c
Q 011688 123 ---------------------------------------GMKAFAGLINLVKLDLERCTRIH-----------------G 146 (479)
Q Consensus 123 ---------------------------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 146 (479)
+|..++++++|++|++++|.... .
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 56678899999999999976443 1
Q ss_pred cccccc--CCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC-CCh-HHHHHhhcC-------CCCCEEEecCCC
Q 011688 147 GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEGCP 215 (479)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~ 215 (479)
.|..+. ++++|++|++++|.. ....+..+.++++|+.|++++|. +++ ..+..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 677776 999999999998654 44456788999999999999998 887 566666555 499999999999
Q ss_pred CCHHHHH--HhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCC-CCEEeccCcccChhh
Q 011688 216 VTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG 292 (479)
Q Consensus 216 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 292 (479)
+. .+|. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 88 4566 8999999999999999988 344 7888999999999999887 44455778888 999999999987 44
Q ss_pred hHhhcCCC--CCCEEEccCCCCChHHHH---Hhh--CCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHH
Q 011688 293 LRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 293 ~~~~~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (479)
+..+...+ +|+.|++++|.+....+. .+. ..++|+.|++++|.+...+...+..+++|+.|++++|.+...+.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 45555444 499999999988653221 112 34589999999999987766666789999999999999986654
Q ss_pred Hhhh-------cCCCCcEEEecCCCCCchhHHhhh--hcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCC------
Q 011688 366 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------ 430 (479)
Q Consensus 366 ~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~------ 430 (479)
..+. ++++|+.|++++|.+... +..+. .+++|+.|+|++| .+.. +|..+..+++|+.|++++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred HHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 4443 234999999999999854 55555 8899999999999 7877 577788999999999976
Q ss_pred CccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCCCccccCC
Q 011688 431 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 478 (479)
Q Consensus 431 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l~~ 478 (479)
|.+....|..+..+++|+.|++++|+++.. ...-+++|+.|++
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-----p~~l~~~L~~LdL 834 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKV-----DEKLTPQLYILDI 834 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCSSSCEEEC
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCCcc-----CHhhcCCCCEEEC
Confidence 677777788888999999999999998432 2123467777665
No 23
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=6e-33 Score=266.10 Aligned_cols=362 Identities=22% Similarity=0.225 Sum_probs=271.7
Q ss_pred CCCCEEecCCCCCCChhHHHH-hhCCCCCcEEEcCCCCcccH----HHHHHHhCCCCCcEEEccCccccccccccccCCC
Q 011688 81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 155 (479)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (479)
++|++|++++ +.+++..... +..+++|++|++++|. +.. ..+..+..+++|++|++++|......+..+.
T Consensus 3 ~~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~--- 77 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL--- 77 (461)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH---
T ss_pred ccceehhhhh-cccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH---
Confidence 4677888877 4566655444 6677888888888887 343 2345566667777777766542221111110
Q ss_pred CCcEEeccCCCCCCccccccccC-CCCCcEEEcccCCCCh----HHHHHhhcCCCCCEEEecCCCCCHHHHHHhh-----
Q 011688 156 KLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS----- 225 (479)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----- 225 (479)
..+.. .++|++|++++|.++. ..+..+..+++|++|++++|.+....+..+.
T Consensus 78 ------------------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 139 (461)
T 1z7x_W 78 ------------------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139 (461)
T ss_dssp ------------------HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred ------------------HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence 01111 1268888888887774 3467788999999999999998765555443
Q ss_pred CCCCCcEEEccCCCCCchh----hHhhhCCCCCCEEeccCCCCChHHHHHHh-----cCCCCCEEeccCcccChhh----
Q 011688 226 ALGSLFYLNLNRCQLSDDG----CEKFSRLTNLESLNLDSCGIGDEGLVNLT-----GLCNLKCLELSDTQVGSSG---- 292 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---- 292 (479)
..++|++|++++|.+.... +..+..+++|+.|++++|.+.+.....+. ..++|+.|++++|.++...
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 2568999999999988744 45566789999999999988766555443 3679999999999987753
Q ss_pred hHhhcCCCCCCEEEccCCCCChHHHHHh-----hCCCCCcEEecCCCCCCHHH----HHHHhcCCCCCEEEcCCCccchh
Q 011688 293 LRHLSGLTNLESINLSFTGISDGSLRKL-----AGLSSLKSLNLDARQITDTG----LAALTSLTGLTHLDLFGARITDS 363 (479)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~ 363 (479)
+..+..+++|++|++++|.+.+.....+ ..+++|++|++++|.++... +..+..+++|++|++++|.++..
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 4556778999999999999877654333 25899999999999999864 34556799999999999999876
Q ss_pred HHHhhhc-----CCCCcEEEecCCCCCchh----HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhc-----CCCCCeeecC
Q 011688 364 GAAYLRN-----FKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-----LTGLVSLNVS 429 (479)
Q Consensus 364 ~~~~~~~-----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~ 429 (479)
+...+.. .++|+.|++++|.+++.. +..+..+++|++|++++| .+.+..+..+.. .++|++|+++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 6555532 379999999999998764 345567799999999999 888876665553 7899999999
Q ss_pred CCccCH----HHHHcccCCCccceecccccccCHHHHHHHH
Q 011688 430 NSRITS----AGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 430 ~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (479)
+|.++. ..+..+..+++|++|++++|+++..++..+.
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence 999996 4556777899999999999999998887766
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.1e-33 Score=264.20 Aligned_cols=346 Identities=28% Similarity=0.362 Sum_probs=264.6
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
+++++.|++.++.+... ..+..+++|++|++++| .+....+ +..+++|++|++++|.. ....+ ++++++|++
T Consensus 45 l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence 45699999999887653 34788999999999995 5666544 88999999999999874 33333 889999999
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|++++|.... .+ .+..+++|++|+++++. +... ..+..+++|+.|++.+ .+... ..+..+++|+.|+++++.
T Consensus 117 L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITD-ID-PLKNLTNLNRLELSSNT-ISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCC-CG-GGTTCTTCSEEEEEEEE-ECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-Ch-HHcCCCCCCEEECCCCc-cCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence 9999875433 33 27889999999998854 4432 3578889999999864 33332 237888899999999988
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 7654 347788899999999888776543 66788899999998877654 246778889999998888765543
Q ss_pred hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc
Q 011688 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 6778888888888887776443 6778888888888888776543 6678888888888888877654 56788888
Q ss_pred EEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHH
Q 011688 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 376 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 436 (479)
.|++++|.+.+. ..+..+++|+.|++++| .+.+..| +..+++|+.|++++|+++..
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence 888888888775 45677888888888888 6776655 77788888888888877663
No 25
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.5e-31 Score=264.89 Aligned_cols=465 Identities=21% Similarity=0.235 Sum_probs=329.1
Q ss_pred CCcHHHHHHHHHHhh-hcCcccHHHH--Hhh--ccCccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCC-Ccch-
Q 011688 1 MLPRDISQQIFNELV-YSRCLTEVSL--EAF--RDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV-TDSG- 73 (479)
Q Consensus 1 ~~~~~v~~~~~~~l~-~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~~~- 73 (479)
.+|+||+..+|..|- .+....-..+ ... ..-..+++.+..+.... ...+...+++++.|+++++.. .+..
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhccc
Confidence 379999999998776 3221110000 000 01123455555554333 234455689999999999642 1111
Q ss_pred -------------hhcccCCCCCCEEecCCCCCCChhHHHHhh-CCCCCcEEEcCCCCcccHHHH-HHHhCCCCCcEEEc
Q 011688 74 -------------LIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDL 138 (479)
Q Consensus 74 -------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l 138 (479)
......+++|++|++++| .+++..+..+. .+++|++|++++|..++.... ..+..+++|++|++
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 011357899999999996 58888787776 799999999999965665544 44458999999999
Q ss_pred cCcccccccccc----ccCCCCCcEEeccCCC-CCCccccc-cccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEec
Q 011688 139 ERCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212 (479)
Q Consensus 139 ~~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 212 (479)
++|......+.. ...+++|++|+++++. .++..... .+..+++|+.|++.++......+..+..+++|+.|++.
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 998744333322 3367899999999865 23322222 23457999999999883333356677889999999987
Q ss_pred CCCC--C----HHHHHHhhCCCCCcEE-EccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHH-HHhcCCCCCEEecc
Q 011688 213 GCPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELS 284 (479)
Q Consensus 213 ~~~~--~----~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~ 284 (479)
.+.. . ...+..+..+++|+.+ .+..... ...+..+..+++|++|++++|.+++.... .+..+++|+.|++.
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 6642 1 2234577889999999 4433221 22333444689999999999988765544 35689999999999
Q ss_pred CcccChhhhHhh-cCCCCCCEEEccC---------CCCChHHHHHhh-CCCCCcEEecCCCCCCHHHHHHHh-cCCCCCE
Q 011688 285 DTQVGSSGLRHL-SGLTNLESINLSF---------TGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTH 352 (479)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~L~~L~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~ 352 (479)
++ +.......+ ..+++|+.|++.+ +.+++.....+. .+++|++|.+..+.+++.....+. .+++|+.
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 88 444443333 4589999999933 467766666665 489999999988899887776665 6899999
Q ss_pred EEcC--C----Cccch-----hHHHhhhcCCCCcEEEecCCCCCchhHHhhhh-cCCCCEEEcCCCCCCCHHHHHHH-hc
Q 011688 353 LDLF--G----ARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SG 419 (479)
Q Consensus 353 L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l-~~ 419 (479)
|+++ + +.++. .....+..+++|+.|++++ .+++.....+.. +++|++|++++| .+++..+..+ .+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHH
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhc
Confidence 9998 3 35552 2233357889999999987 777776666665 899999999999 7888777666 67
Q ss_pred CCCCCeeecCCCccCHHHHH-cccCCCccceecccccccCHHHHHHHHhccCCCcc
Q 011688 420 LTGLVSLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 474 (479)
Q Consensus 420 ~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~ 474 (479)
+++|++|++++|.+++.+.. ....+++|++|++++|+++..+++.+. ..+|+++
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence 99999999999999877665 345689999999999999988888874 5778774
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-32 Score=262.57 Aligned_cols=344 Identities=30% Similarity=0.371 Sum_probs=175.5
Q ss_pred CCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcE
Q 011688 80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (479)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (479)
+++++.|++.++ .+... ..+..+++|++|++++|.. ....+ +.++++|++|++++|.... .+. +..+++|++
T Consensus 45 l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred hccccEEecCCC-CCccC--cchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCcccc-Chh-hcCCCCCCE
Confidence 445555555553 23321 2245555666666665542 22222 5555666666665543222 222 555556666
Q ss_pred EeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCC
Q 011688 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (479)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 239 (479)
|+++++. +.... .+..+++|++|++++|.+... ..+..+++|+.|++.+. +... ..+..+++|+.|++++|.
T Consensus 117 L~L~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQ-ITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSC-CCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcCCc
Confidence 6665532 33222 255555666666655555432 13455555666655432 2211 124555566666665555
Q ss_pred CCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHH
Q 011688 240 LSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 319 (479)
+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 5443 224455556666665555443322 44555566666655555432 234455556666666555544322
Q ss_pred hhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCC
Q 011688 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399 (479)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 399 (479)
+..+++|++|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 4555566666666555554332 4455556666666655554432 4455566666666665555432 44555666
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 400 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+|++++| .+.+. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|+++
T Consensus 335 ~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 335 RLFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp EEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred EeECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 6666655 44442 234555566666666665555443 455555666666665544
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-34 Score=281.29 Aligned_cols=389 Identities=16% Similarity=0.142 Sum_probs=277.8
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|++++|.+....+..|.++++|++|++++| .++...+..|..+++|++|++++|.. + ..|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCE
Confidence 478999999999998877778999999999999984 67877778889999999999999874 3 33333 7899999
Q ss_pred EEccCcccccc-ccccccCCCCCcEEeccCCCCCCccccccccCCCCC--cEEEcccCCC--ChHHHHHhh---------
Q 011688 136 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK--------- 201 (479)
Q Consensus 136 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--------- 201 (479)
|++++|..... .+..++++++|++|++++ +.+... .+..+++| +.|+++++.+ ....+..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCC-CccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 99999765442 346788999999999998 445433 34444555 9999988877 333222222
Q ss_pred -----------------cCCCCCEEEecCCCCC----HHHHHHhhCCC---------------------------CCcEE
Q 011688 202 -----------------GLQKLTLLNLEGCPVT----AACLDSLSALG---------------------------SLFYL 233 (479)
Q Consensus 202 -----------------~l~~L~~L~l~~~~~~----~~~~~~l~~~~---------------------------~L~~L 233 (479)
.+++|+.++++++... ......+..++ +|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 2335555555554311 11122333444 45555
Q ss_pred EccCCCCCchhhHhh-----hCCCCCCEEeccCCCC--ChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEE
Q 011688 234 NLNRCQLSDDGCEKF-----SRLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306 (479)
Q Consensus 234 ~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (479)
++++|.+.+..+..+ ..++.|+.+++..+.+ .......+....+|+.|+++++.+.... ....+++|++|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 555544433222222 2233333333333322 1112222223367899999888764332 126789999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEecCCCCCCHH--HHHHHhcCCCCCEEEcCCCccch-hHHHhhhcCCCCcEEEecCCC
Q 011688 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 383 (479)
+++|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.++. .+...+..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 999999887777888999999999999998863 34567889999999999999987 555557788999999999999
Q ss_pred CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 384 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+++..+..+. ++|++|++++| .+.. +|..+.++++|++|++++|.++.+++..+..+++|+.|++++|++..
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCcchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9876554432 79999999999 7885 55555689999999999999998665558899999999999999875
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=271.99 Aligned_cols=389 Identities=17% Similarity=0.173 Sum_probs=286.0
Q ss_pred CccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcE
Q 011688 31 CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTS 110 (479)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 110 (479)
..++.+.++++. +.......+ ..+++|++|++++|.++...+..|..+++|++|++++| .++.... . .+++|++
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISC-H--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHH-TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEEC-C--CCCCCSE
T ss_pred ccccEEECCCCc-ccccChhhc-cccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCc-c--ccCCccE
Confidence 357788888774 222222233 45899999999999999888888999999999999995 6665332 2 7999999
Q ss_pred EEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCC--cEEeccCCCCC-Cccccc-------------
Q 011688 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMK------------- 174 (479)
Q Consensus 111 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~------------- 174 (479)
|++++|.......|..++++++|++|++++|.... ..+..+++| ++|+++++... ....+.
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 99999985332457889999999999999976443 346667777 99999885430 111222
Q ss_pred -------------cccCCCCCcEEEcccCC-------CChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhh---CCCCCc
Q 011688 175 -------------PLSGLTNLKSLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---ALGSLF 231 (479)
Q Consensus 175 -------------~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~ 231 (479)
.+.++++|+.+++++|. +.+. ...+..+++|+.|+++++.+....+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI-LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH-HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecc-hhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 22346777777777765 3332 23677788888888887766554333221 245777
Q ss_pred EEEccCCCCCchhhHhh-----hCCCCCCEEeccC--------------------------CCCChHHHHHHhcCCCCCE
Q 011688 232 YLNLNRCQLSDDGCEKF-----SRLTNLESLNLDS--------------------------CGIGDEGLVNLTGLCNLKC 280 (479)
Q Consensus 232 ~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~--------------------------~~~~~~~~~~~~~~~~L~~ 280 (479)
+|++++|.+.+..+..+ ..++.|+.+++++ +.+..... ...+++|++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccE
Confidence 77777776553333333 4444455554444 43322110 157899999
Q ss_pred EeccCcccChhhhHhhcCCCCCCEEEccCCCCCh--HHHHHhhCCCCCcEEecCCCCCCH-HHHHHHhcCCCCCEEEcCC
Q 011688 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 357 (479)
|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+ .+...+..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 9999999988777888999999999999999987 445778899999999999999987 5444567789999999999
Q ss_pred CccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
|.+++..+..+. ++|+.|++++|.+... +..+..+++|++|++++| .+....+..+..+++|++|++++|++..
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999866554433 7999999999999854 555568999999999999 7886444458889999999999998764
No 29
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.3e-32 Score=270.48 Aligned_cols=463 Identities=17% Similarity=0.162 Sum_probs=324.4
Q ss_pred CcHHHHHHHHHHh-hhc-----CcccHHHHHhhccCccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCc-c--
Q 011688 2 LPRDISQQIFNEL-VYS-----RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD-S-- 72 (479)
Q Consensus 2 ~~~~v~~~~~~~l-~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-- 72 (479)
+|+|++..+|..| -.+ +.+-..=.... ...-..+.+..+... ....+...++++++|+++++.... .
T Consensus 16 LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~-~~~~~~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 91 (592)
T 3ogk_B 16 TVDDVIEQVMTYITDPKDRDSASLVCRRWFKID-SETREHVTMALCYTA---TPDRLSRRFPNLRSLKLKGKPRAAMFNL 91 (592)
T ss_dssp CGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH-HHHCCEEEESCGGGS---CHHHHHHHCTTCSEEEEECSCGGGGGTC
T ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh-hccccEEEEeecccc---ChHHHHHhCCCCeEEEecCCcchhhccc
Confidence 7999999999877 211 11111000000 001123333322111 234455668889999998743210 0
Q ss_pred -----------hhhc-ccCCCCCCEEecCCCCCCChhHHHHhhC-CCC-CcEEEcCCCCcccHHHH-HHHhCCCCCcEEE
Q 011688 73 -----------GLIH-LKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLSFRRNNAITAQGM-KAFAGLINLVKLD 137 (479)
Q Consensus 73 -----------~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~ 137 (479)
.... ...+++|++|++++| .+++..+..+.. +++ |++|++++|..+..... .....+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (592)
T 3ogk_B 92 IPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170 (592)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred ccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence 0111 237899999999996 688877777765 444 99999999875444433 3445899999999
Q ss_pred ccCccccccc----cccccCCCCCcEEeccCCCCCCc----cccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEE
Q 011688 138 LERCTRIHGG----LVNLKGLMKLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209 (479)
Q Consensus 138 l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 209 (479)
+++|...... ......+++|++|+++++. ++. .....+.++++|+.|++.++.+.+ .+..+..+++|+.|
T Consensus 171 L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEF 248 (592)
T ss_dssp CTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEE
T ss_pred CccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhh
Confidence 9998644332 2234568999999998844 331 122344578999999999988776 34678889999999
Q ss_pred EecCCCCC---HHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHH-HHHhcCCCCCEEeccC
Q 011688 210 NLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSD 285 (479)
Q Consensus 210 ~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 285 (479)
++++.... ...+..+..+++|+.+++.++.. ...+..+..+++|++|++++|.+++... ..+..+++|+.|++.
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-
T ss_pred cccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-
Confidence 99864322 11233556778999999987533 3344566778999999999998776655 446789999999998
Q ss_pred cccChhhhH-hhcCCCCCCEEEccC-----------CCCChHHHHH-hhCCCCCcEEecCCCCCCHHHHHHHhc-CCCCC
Q 011688 286 TQVGSSGLR-HLSGLTNLESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLT 351 (479)
Q Consensus 286 ~~~~~~~~~-~~~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~ 351 (479)
+.+...... ....+++|++|++.+ +.++...... ...+++|++|++..+.+++.....+.. +++|+
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 444444433 346789999999994 4666655544 345899999999888999887777765 99999
Q ss_pred EEEcC----CCccchh-----HHHhhhcCCCCcEEEecCCC--CCchhHHhhh-hcCCCCEEEcCCCCCCCHHH-HHHHh
Q 011688 352 HLDLF----GARITDS-----GAAYLRNFKNLRSLEICGGG--LTDAGVKHIK-DLSSLTLLNLSQNCNLTDKT-LELIS 418 (479)
Q Consensus 352 ~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~-~~~l~ 418 (479)
+|+++ .+.++.. ....+.++++|++|+++.|. +++.....+. .+++|++|++++| .+++.. +..+.
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~ 485 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR 485 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT
T ss_pred EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh
Confidence 99996 4566642 34446779999999997654 6766666664 4899999999999 787754 45567
Q ss_pred cCCCCCeeecCCCccCHHHHHc-ccCCCccceecccccccCHHHHHHHHhccCCCccc
Q 011688 419 GLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 475 (479)
Q Consensus 419 ~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~ 475 (479)
++++|++|++++|.++..+... +..+++|++|++++|+++..+++.+. ..+|.+..
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~ 542 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNI 542 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEE
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEE
Confidence 8999999999999988765433 45789999999999999998887765 66776643
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-31 Score=245.05 Aligned_cols=306 Identities=27% Similarity=0.354 Sum_probs=189.1
Q ss_pred hCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCC
Q 011688 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL 182 (479)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 182 (479)
..+++|++|+++++... .. ..+..+++|++|++++|... ..+. +..+++|++|+++++ .+... ..+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITDI--SALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCC--GGGTTCTTC
T ss_pred hhcccccEEEEeCCccc-cc--hhhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccCc--hHHcCCCcC
Confidence 34566677777766532 11 22555666666666665322 2222 555555666655553 23321 234455555
Q ss_pred cEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCC
Q 011688 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSC 262 (479)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (479)
++|+++++.+..... +.. +++|+.|++++|...... ..+..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~------------------------l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LAN------------------------LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165 (347)
T ss_dssp SEEECTTSCCCCCGG--GTT------------------------CTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS
T ss_pred CEEECcCCcccCchh--hcc------------------------CCceeEEECCCCCCcccc-cchhhCCCCcEEEecCC
Confidence 555555554443221 344 444555555444322221 22445555555555555
Q ss_pred CCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHH
Q 011688 263 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 342 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (479)
.+..... +..+++|+.|++++|.+..... +..+++|+.+++++|.+..... +..+++|++|++++|.+.....
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 4433222 4455666666666655543322 5556677777777766654333 5667777777777777766543
Q ss_pred HHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCC
Q 011688 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422 (479)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 422 (479)
+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++| .+....+..+..+++
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTN 312 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTT
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhcccc
Confidence 66778888888888877764 3467788889999988888775 34677889999999998 788888888888999
Q ss_pred CCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 423 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 423 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
|++|++++|+++...+ +..+++|++|++++|+++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999998888665 678889999999999876
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-33 Score=277.18 Aligned_cols=399 Identities=22% Similarity=0.232 Sum_probs=275.5
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+.+++|++++|.++......|.++++|++|++++| .+....+.+|..+++|++|+|++|. ++...+..|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 457999999999999888888999999999999995 6888777889999999999999997 55666678899999999
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCC----CCEEE-
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLN- 210 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~- 210 (479)
|++++|......+..|+++++|++|+++++.......+..+..+++|+.|++++|.++...+..+..+.+ ...++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999986555555678999999999999854333334567788999999999999887544333322211 11223
Q ss_pred ----------------------ecCCCCCH-HHHHHhhCCCCCcEEEcc-------------------------------
Q 011688 211 ----------------------LEGCPVTA-ACLDSLSALGSLFYLNLN------------------------------- 236 (479)
Q Consensus 211 ----------------------l~~~~~~~-~~~~~l~~~~~L~~L~l~------------------------------- 236 (479)
+.++.... .....+..+..++...+.
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 32222111 112223333333322211
Q ss_pred --------------------------CCCCCchhhHhhhCCCCCCEEeccCCCCChHH-------------------HHH
Q 011688 237 --------------------------RCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG-------------------LVN 271 (479)
Q Consensus 237 --------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------~~~ 271 (479)
++.+.. ...+.....++.|++.++.+.... ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 110000 011122233444444333211000 000
Q ss_pred HhcCCCCCEEeccCcccChh-------------------------hhHhhcCCCCCCEEEccCCCCCh-HHHHHhhCCCC
Q 011688 272 LTGLCNLKCLELSDTQVGSS-------------------------GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSS 325 (479)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~ 325 (479)
...+++|+.++++.|.+... ....+..+++|+.+++..+.... .....+..+++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 12345555555555443211 11223445666666666553222 12234556788
Q ss_pred CcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccc-hhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcC
Q 011688 326 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 404 (479)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 404 (479)
++.++++.+.+....+..+..++.++.|++++|... ...+..+..+++|+.|++++|.+.+..+..|..+++|++|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 899999988877666666778899999999999754 3456677889999999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCC-CccceecccccccCH
Q 011688 405 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 459 (479)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 459 (479)
+| .+....+..+.++++|+.|++++|++....+..+..+ ++|+.|++++|++..
T Consensus 527 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 527 HN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99 8888878889999999999999999999888888887 689999999998865
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=268.40 Aligned_cols=320 Identities=20% Similarity=0.214 Sum_probs=236.8
Q ss_pred cEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcc
Q 011688 109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188 (479)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 188 (479)
+.++.++... + ..|..+ .+++++|++++|......+..|..+++|++|++++ +.+....+..+.++++|+.|+++
T Consensus 14 ~~v~c~~~~l-~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRF-V-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCC-S-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCc-C-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECC
Confidence 4566555542 1 223222 35788888888765555566788888888888887 45666666778888888888888
Q ss_pred cCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHH
Q 011688 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG 268 (479)
Q Consensus 189 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (479)
+|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88887666566778888888888888887766677788888888888888887776677778888888888888777666
Q ss_pred HHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCC
Q 011688 269 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 348 (479)
Q Consensus 269 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 348 (479)
...+..+++|+.|++.+|.+.......+..+++|+.|++++|......+.......+|++|++++|.+...+...+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 66777888888888888887766666677788888888887755443333334445788888888777766666677777
Q ss_pred CCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeec
Q 011688 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 428 (479)
+|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc
Confidence 8888888888777766666777778888888887777766667777777888888777 666655566667777778888
Q ss_pred CCCccC
Q 011688 429 SNSRIT 434 (479)
Q Consensus 429 ~~~~~~ 434 (479)
++|++.
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 777654
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.1e-30 Score=236.06 Aligned_cols=301 Identities=26% Similarity=0.326 Sum_probs=177.8
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
++++++|+++++.+... ..+..+++|++|++++| .+.+... +..+++|++|++++|.. +.. ..+..+++|++
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i-~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKI-TDI--SALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCC--GGGTTCTTCSE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcc-cCc--hHHcCCCcCCE
Confidence 46677788877776543 34677777888887774 4554433 67777777777777753 221 34667777777
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|++++|.... .+. +..+++|++|+++++..... ...+..+++|+.|+++++.+..... +..+++|+.|++++|.
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 7777654332 222 56667777777766544442 2235566666666666665544322 4555555555555555
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+....+ +..+++|+.++++++.+.... + +..+++|+.|++++|.+.....
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~------------------------~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDIT------------------------P--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCG------------------------G--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCCc------------------------h--hhcCCcCCEEEccCCccCCCcc--
Confidence 443211 444455555555554444332 2 3444445555555444433222
Q ss_pred hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc
Q 011688 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.++...+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44555566666665555442 2355566666666666665554 2355667777777777777766666677777777
Q ss_pred EEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 376 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 376 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
.|++++|.+++..+ +..+++|++|++++|
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred EEEccCCccccccC--hhhhhccceeehhhh
Confidence 77777777766544 566777777777777
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.4e-32 Score=269.52 Aligned_cols=388 Identities=17% Similarity=0.140 Sum_probs=272.5
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
.++.+.+.++.- ...... ....+++|++|++++|.++...+..|..+++|++|++++| .++..... .+++|++|
T Consensus 53 ~L~~L~Ls~N~i-~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L 126 (562)
T 3a79_B 53 RTKALSLSQNSI-SELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHL 126 (562)
T ss_dssp TCCEEECCSSCC-CCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEE
T ss_pred CcCEEECCCCCc-cccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEE
Confidence 355666655531 111111 1245789999999999999888888999999999999995 56654322 79999999
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCC--cEEeccCCCCC-Cccccccc------------
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKPL------------ 176 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~~~------------ 176 (479)
++++|.......|..++++++|++|++++|..... .+..+++| ++|+++++... ....+..+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 99999853323457899999999999999765443 34445555 99999985430 22222222
Q ss_pred --------------cCCCCCcEEEcccCCCCh----HHHHHhhc---------------------------CCCCCEEEe
Q 011688 177 --------------SGLTNLKSLQISCSKVTD----SGIAYLKG---------------------------LQKLTLLNL 211 (479)
Q Consensus 177 --------------~~~~~L~~L~l~~~~~~~----~~~~~l~~---------------------------l~~L~~L~l 211 (479)
..+++|+.++++++.... .....+.. .++|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 234456666666553110 00111222 246777777
Q ss_pred cCCCCCHHHHHHh-----hCCCCCcEEEccCCCCCchhhH---hhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 212 EGCPVTAACLDSL-----SALGSLFYLNLNRCQLSDDGCE---KFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 212 ~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
+++.+.+..|..+ ..++.|+.+++..+.+ ..... .+....+|+.|+++++.+..... ...+++|++|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEEC
Confidence 7776554444444 4445555555555544 11111 12223679999999997653221 157889999999
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCCCCCh--HHHHHhhCCCCCcEEecCCCCCCH-HHHHHHhcCCCCCEEEcCCCcc
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 360 (479)
++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.. .+...+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999988777888999999999999999886 345668889999999999999876 4434566789999999999999
Q ss_pred chhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
++..+..+. ++|+.|++++|.++.. +..+..+++|++|++++| .+....+..+..+++|+.|++++|++..
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 865444332 6999999999999865 444458999999999999 7886444448889999999999998764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5e-32 Score=260.46 Aligned_cols=299 Identities=23% Similarity=0.253 Sum_probs=263.4
Q ss_pred CCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEE
Q 011688 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (479)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (479)
+++++|+++++. ++...+..|.++++|++|++++|......+..|.++++|++|++++ +.+.......+.++++|+.|
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEE
Confidence 589999999998 5566677899999999999999876666678899999999999998 45666666778899999999
Q ss_pred EcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCC
Q 011688 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265 (479)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (479)
++++|.+....+..+..+++|+.|+++++.+....+..+..+++|+.|++++|.+.......+..+++|+.|+++++.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999998877778899999999999999988777778889999999999999998877778899999999999999887
Q ss_pred hHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh
Q 011688 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345 (479)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (479)
......+..+++|+.|+++++......+.......+|+.|++++|.++......+..+++|++|++++|.+.......+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 76666678899999999999876555554445556999999999999887777889999999999999999887777788
Q ss_pred cCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
.+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|++++|
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 8999999999999999988888899999999999999999887778888999999999999
No 36
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=9.4e-30 Score=251.96 Aligned_cols=425 Identities=20% Similarity=0.193 Sum_probs=310.9
Q ss_pred CCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhH--------------HHHhhCCCCC
Q 011688 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGG--------------LEHLRGLSNL 108 (479)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~L 108 (479)
.+...|...... ..+.+++...... .....+.++++|++|++++|..+.+.. ......+++|
T Consensus 32 ~vck~W~~~~~~---~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 32 LVCKSWYEIERW---CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp TSCHHHHHHHHH---HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhhh---hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 456778776332 2456677664322 223457889999999999976543321 2234578999
Q ss_pred cEEEcCCCCcccHHHHHHHh-CCCCCcEEEccCcccccc--ccccccCCCCCcEEeccCCCCCCccccc----cccCCCC
Q 011688 109 TSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK----PLSGLTN 181 (479)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~ 181 (479)
++|++++|. +++..+..+. .+++|++|++++|..... .+.....+++|++|++++|. +++.... ....+++
T Consensus 108 ~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 108 EEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp CEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCC
T ss_pred CeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCc
Confidence 999999997 6777777776 799999999999854443 33344578999999999865 4433322 2337789
Q ss_pred CcEEEcccCC--CChHHHHH-hhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCC------chhhHhhhCCC
Q 011688 182 LKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS------DDGCEKFSRLT 252 (479)
Q Consensus 182 L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~ 252 (479)
|+.|+++++. +....... ...+++|++|++++|......+..+..+++|+.|++..+... ...+..+.+++
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence 9999999886 54443333 366899999999999554556778889999999998766421 11234678899
Q ss_pred CCCEE-eccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh-hcCCCCCCEEEccCCCCChHHHHHhh-CCCCCcEE
Q 011688 253 NLESL-NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH-LSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSL 329 (479)
Q Consensus 253 ~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L 329 (479)
+|+.+ .+.+... ...+..+..+++|++|++++|.++...... +..+++|+.|++.+| +.+.....+. .+++|++|
T Consensus 266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 99999 4544321 222333446799999999999876655443 578999999999988 5444444443 48999999
Q ss_pred ec---------CCCCCCHHHHHHHh-cCCCCCEEEcCCCccchhHHHhhh-cCCCCcEEEec--C----CCCCc----hh
Q 011688 330 NL---------DARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLR-NFKNLRSLEIC--G----GGLTD----AG 388 (479)
Q Consensus 330 ~l---------~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~----~~ 388 (479)
++ ..+.+++.....+. .+++|++|.+..+.++......+. .+++|+.|+++ + +.+++ .+
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 99 33567776665554 589999999888888877666664 68999999999 4 45652 22
Q ss_pred -HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhc-CCCCCeeecCCCccCHHHHHcc-cCCCccceecccccccCHHHHHHH
Q 011688 389 -VKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRL 465 (479)
Q Consensus 389 -~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l 465 (479)
...+..+++|++|++++ .+.+..+..+.. +++|+.|++++|.+++.++..+ ..+++|++|++++|++++..+..+
T Consensus 424 ~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 23356789999999977 588877777776 9999999999999988777665 679999999999999988887766
Q ss_pred HhccCCCccccCC
Q 011688 466 QSRDLPNLVSFRP 478 (479)
Q Consensus 466 ~~~~~~~l~~l~~ 478 (479)
. ..+|+|+.|++
T Consensus 502 ~-~~l~~L~~L~l 513 (594)
T 2p1m_B 502 A-SKLETMRSLWM 513 (594)
T ss_dssp G-GGGGGSSEEEE
T ss_pred H-HhCCCCCEEee
Confidence 5 56889988764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.3e-31 Score=247.78 Aligned_cols=318 Identities=18% Similarity=0.166 Sum_probs=189.5
Q ss_pred CCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCc
Q 011688 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (479)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (479)
.++++++|+++++. +....+..+..+++|++|++++|......+..+..+++|++|+++++ .+....+..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 35788888888876 34444555677888888888887654444556777788888888773 45555556677777777
Q ss_pred EEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCC
Q 011688 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG 263 (479)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (479)
.|++++|.+.......+..+++|++|+++++.+....+..+..+++|+.|++++|.+.... +..+++|+.++++++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 7777777776544444566677777777777665554555666666666666666655432 3345556666665554
Q ss_pred CChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHH
Q 011688 264 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 343 (479)
Q Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 343 (479)
+.. +...++|+.|++++|.+ ..... ..+++|++|++++|.+.+. ..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l------------------------~~~~~---~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSI------------------------NVVRG---PVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCC------------------------CEEEC---CCCSSCCEEECCSSCCCCC--GG
T ss_pred ccc-----cCCCCcceEEECCCCee------------------------eeccc---cccccccEEECCCCCCccc--HH
Confidence 432 12233455555554444 32211 1134555555555555443 23
Q ss_pred HhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCC
Q 011688 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 423 (479)
+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+. +..+..+++|++|++++| .+.. .+..+..+++|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~l~~L 320 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRL 320 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTC
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-ccee-cCccccccCcC
Confidence 44556666666666666555555555666666666666666553 222344566666666666 4553 33334556666
Q ss_pred CeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHHH
Q 011688 424 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 466 (479)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (479)
+.|++++|++.... +..+++|++|++++|+++......+.
T Consensus 321 ~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 321 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred CEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 66666666665542 44566667777777766665555443
No 38
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=3.1e-30 Score=255.25 Aligned_cols=418 Identities=20% Similarity=0.195 Sum_probs=309.4
Q ss_pred ccceeecCCCC-------------CCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccC-CCC-CCEEecCCCCCCCh
Q 011688 32 ALQDLCLGQYP-------------GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISD 96 (479)
Q Consensus 32 ~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~ 96 (479)
.++.+.+..++ .....|...+...+++|++|+++++.+++.....+.. ++. |++|++++|..+..
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~ 153 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH
Confidence 47777775543 2234577777778999999999999888777776665 555 99999999876665
Q ss_pred hHHHHh-hCCCCCcEEEcCCCCcccHH----HHHHHhCCCCCcEEEccCcccc----ccccccccCCCCCcEEeccCCCC
Q 011688 97 GGLEHL-RGLSNLTSLSFRRNNAITAQ----GMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNC 167 (479)
Q Consensus 97 ~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~ 167 (479)
.....+ ..+++|++|++++|.. ++. .+.....+++|++|+++++... ...+..+..+++|++|++++|.
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~- 231 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE- 231 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-
T ss_pred HHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-
Confidence 555443 4899999999999963 322 5556678999999999987543 2233445678999999999854
Q ss_pred CCccccccccCCCCCcEEEcccCCCC---hHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchh
Q 011688 168 ITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244 (479)
Q Consensus 168 ~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 244 (479)
+.. .+..+..+++|+.|.+...... ......+..+++|+.+++.++.... .+..+..+++|++|++++|.+....
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT-GGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH-HHHHHhhcCCCcEEecCCCcCCHHH
Confidence 333 3466778899999999753222 1223345778899999998864333 3666778899999999999976654
Q ss_pred h-HhhhCCCCCCEEeccCCCCChHH-HHHHhcCCCCCEEeccC-----------cccChhhhHh-hcCCCCCCEEEccCC
Q 011688 245 C-EKFSRLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLESINLSFT 310 (479)
Q Consensus 245 ~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~ 310 (479)
. ..+..+++|+.|++.++ +.+.. ......+++|++|++.+ +.++...... ...+++|++|++..+
T Consensus 310 ~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 4 44678999999999844 43333 33446789999999993 4565554433 456899999999888
Q ss_pred CCChHHHHHhhC-CCCCcEEecC----CCCCCH-----HHHHHHhcCCCCCEEEcCCCc--cchhHHHhh-hcCCCCcEE
Q 011688 311 GISDGSLRKLAG-LSSLKSLNLD----ARQITD-----TGLAALTSLTGLTHLDLFGAR--ITDSGAAYL-RNFKNLRSL 377 (479)
Q Consensus 311 ~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~-----~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L 377 (479)
.+++..+..+.. +++|++|++. .+.+++ .....+..+++|++|++++|. ++......+ ..+++|+.|
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 999888888876 9999999996 455654 233445679999999998764 666555555 458999999
Q ss_pred EecCCCCCchhHH-hhhhcCCCCEEEcCCCCCCCHHHHH-HHhcCCCCCeeecCCCccCHHHHHcc-cCCCccceecccc
Q 011688 378 EICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLES 454 (479)
Q Consensus 378 ~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~ 454 (479)
++++|.+++.... .+..+++|++|++++| .+++.... ....+++|+.|++++|+++..+...+ ..+|.+....+..
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999875544 4477899999999999 57766444 44679999999999999888665444 3577777666665
Q ss_pred c
Q 011688 455 C 455 (479)
Q Consensus 455 ~ 455 (479)
+
T Consensus 548 ~ 548 (592)
T 3ogk_B 548 R 548 (592)
T ss_dssp C
T ss_pred c
Confidence 4
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.7e-30 Score=238.92 Aligned_cols=312 Identities=16% Similarity=0.150 Sum_probs=215.7
Q ss_pred CCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCc
Q 011688 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (479)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (479)
.+++++.|+++++ .+.......+..+++|++|+++++. +....+..++.+++|++|++++|......+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4689999999994 6777777778999999999999997 4566667899999999999999876666667789999999
Q ss_pred EEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCC
Q 011688 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (479)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (479)
+|+++++ .+...+...+.++++|++|++++|.+....+..+..+++|++|+++++.+... .+..+++|+.++++++
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999994 56655556678999999999999999887777789999999999999988764 3567899999999999
Q ss_pred CCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHH
Q 011688 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (479)
.+... ...+.|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|+.|++++|.+....+.
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 87653 345789999999997754321 2345677777777666443 3445556666666666655544444
Q ss_pred HhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCC
Q 011688 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 398 (479)
.+..+++|++|++++|.+.... ..+..+++|+.|++++|.+... +..+..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L 320 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALN-------------------------LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRL 320 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEE-------------------------CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTC
T ss_pred HccccccCCEEECCCCcCcccC-------------------------cccCCCCCCCEEECCCCcceec-CccccccCcC
Confidence 4555555555555555444321 1123344555555555554433 2233444555
Q ss_pred CEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHH
Q 011688 399 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 436 (479)
++|++++| .+.... +..+++|+.|++++|++...
T Consensus 321 ~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 321 ENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCC-ccceeC---chhhccCCEEEcCCCCccch
Confidence 55555555 343321 33455555555555555443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.2e-30 Score=253.09 Aligned_cols=309 Identities=15% Similarity=0.159 Sum_probs=180.1
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcE
Q 011688 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 184 (479)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 184 (479)
+.+++.++++++. +....+..++.+++|++|++++|......+..+..+++|++|+++++ .+....+..+.++++|+.
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 5788999998886 44555566778888999999887655555557788888888888874 466666666778888888
Q ss_pred EEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCC
Q 011688 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGI 264 (479)
Q Consensus 185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (479)
|++++|.+....+..++.+++|++|++++|.+....+..+..+++|+.|++++|.+.... +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 888888777655555677777888888777776665666777777777777777666542 33456677777776655
Q ss_pred ChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHH
Q 011688 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344 (479)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (479)
.. +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 42 23345566666666655332211 124555555555554431 334444555555555555444433444
Q ss_pred hcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCC
Q 011688 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 424 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 424 (479)
..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|++|++++| .+.... +..+++|+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLK 348 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCS
T ss_pred cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCCC
Confidence 4444555555555444443 11223344444444444444432 223344444444444444 333221 23344444
Q ss_pred eeecCCCccC
Q 011688 425 SLNVSNSRIT 434 (479)
Q Consensus 425 ~L~l~~~~~~ 434 (479)
.|++++|++.
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 4444444443
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.6e-31 Score=263.80 Aligned_cols=406 Identities=20% Similarity=0.210 Sum_probs=278.9
Q ss_pred EEEeeCCCCCcchhhcccCC-CCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEcc
Q 011688 61 SVDLSGSDVTDSGLIHLKDC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (479)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (479)
+.+.++.+++.+ | ..+ +.+++|+|++ +.++...+..|..+++|++|++++|. ++...+.+|+++++|++|+++
T Consensus 35 ~~~c~~~~l~~v-P---~~lp~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 35 TYQCMELNFYKI-P---DNLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EEECTTSCCSSC-C---SSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCcCcc-C---CCCCcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEcc
Confidence 345555444432 2 233 3799999999 67888878889999999999999997 556667789999999999999
Q ss_pred CccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChH-HHHHhhcCCCCCEEEecCCCCCH
Q 011688 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTA 218 (479)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 218 (479)
+|......+..|..+++|++|+++++ .+.......++++++|++|++++|.+... .+..+..+++|++|+++++.+..
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 98655555567899999999999994 56666667789999999999999988653 35567889999999999998876
Q ss_pred HHHHHhhCCC----CCcEEEccCCCCCchh------------------------hHhhhCCCCCCEE-------------
Q 011688 219 ACLDSLSALG----SLFYLNLNRCQLSDDG------------------------CEKFSRLTNLESL------------- 257 (479)
Q Consensus 219 ~~~~~l~~~~----~L~~L~l~~~~~~~~~------------------------~~~~~~~~~L~~L------------- 257 (479)
..+..+..+. ....++++.+.+.... ...+..++.++..
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 5444443222 2234555554433211 1112222222221
Q ss_pred --------------------------------------------eccCCCCChHHHHHHhcCCCCCEEeccCcccChhhh
Q 011688 258 --------------------------------------------NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 293 (479)
Q Consensus 258 --------------------------------------------~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 293 (479)
.+.++.+.. ...+.....++.+++.++.+.....
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCc
Confidence 111111100 0113344566777776655432111
Q ss_pred -------------------HhhcCCCCCCEEEccCCCCChH--HHHHhhCCCCCcE-----------------------E
Q 011688 294 -------------------RHLSGLTNLESINLSFTGISDG--SLRKLAGLSSLKS-----------------------L 329 (479)
Q Consensus 294 -------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~-----------------------L 329 (479)
.....+++|+.++++.+.+... .+.....+.+|+. +
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL 425 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence 1113467899999988865421 1222333444444 4
Q ss_pred ecCCCCCCHH-HHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC-chhHHhhhhcCCCCEEEcCCCC
Q 011688 330 NLDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 330 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 407 (479)
++..+..... ....+..+++++.++++.|.+....+..+..++.++.|++++|.+. ...+..+..+++|++|+|++|
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N- 504 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 504 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-
Confidence 4444322111 1123456778888888888887777777788899999999998743 344567788999999999999
Q ss_pred CCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccC-CCccccCC
Q 011688 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP 478 (479)
Q Consensus 408 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-~~l~~l~~ 478 (479)
.+....+..|.++++|++|++++|.+....+..+..+++|+.|++++|+++...-..+. .+ ++|+.|++
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence 89988888999999999999999999998888899999999999999998865433332 34 46777665
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.3e-29 Score=245.92 Aligned_cols=315 Identities=17% Similarity=0.139 Sum_probs=261.9
Q ss_pred CCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCc
Q 011688 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (479)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (479)
.+++++.++++++ .+.......+..+++|++|++++|. +....+..|+.+++|++|++++|......+..++.+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678999999984 6777777788999999999999997 5666677899999999999999876666666789999999
Q ss_pred EEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCC
Q 011688 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (479)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (479)
+|+++++ .+...+...+.++++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 9999995 56666666678999999999999999887777889999999999999988764 3567889999999999
Q ss_pred CCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHH
Q 011688 239 QLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 318 (479)
.+... ...+.|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 87653 345789999999997764322 1346899999999998753 5678899999999999999988888
Q ss_pred HhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCC
Q 011688 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 398 (479)
.+..+++|++|++++|.+...+ ..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.... +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccC-cccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 8999999999999999988753 33456899999999999998654 44577899999999999998763 5668999
Q ss_pred CEEEcCCCCCCCHHHHH
Q 011688 399 TLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~~ 415 (479)
+.|++++| .+......
T Consensus 348 ~~L~l~~N-~~~~~~~~ 363 (597)
T 3oja_B 348 KNLTLSHN-DWDCNSLR 363 (597)
T ss_dssp SEEECCSS-CEEHHHHH
T ss_pred CEEEeeCC-CCCChhHH
Confidence 99999999 66655443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2e-28 Score=232.04 Aligned_cols=339 Identities=19% Similarity=0.119 Sum_probs=199.5
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
++++++|+++++.+++. ..+..+++|++|++++| .++.. .++.+++|++|++++|.. +.. + ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence 46677788877777654 25677777888887774 45553 166777777777777763 332 1 667777777
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|++++|.... .+ +..+++|++|+++++. ++.. .+..+++|+.|++++|...+.. .+..+++|+.|+++++.
T Consensus 111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCe-ec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 7777764332 22 6667777777777633 4432 2566677777777766322211 35566777777777776
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+....
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---
Confidence 6553 2 55666777777777666553 2556667777777766665532 556666777777666665432
Q ss_pred hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHH--------h
Q 011688 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA--------Y 367 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~ 367 (479)
+..+++|+.|+++.+ +|+.|++++|......+ +..+++|+.|++++|...+..+. .
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 344556666655432 34555555554333221 24566777777777653322111 1
Q ss_pred hhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCcc
Q 011688 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 447 (479)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 447 (479)
+..+++|+.|++++|.+++. .+..+++|+.|++++| .+.+ ++.|..|++++|.+... ..+..|
T Consensus 314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 34445666666666665553 2455566666666665 4443 34555555555555442 234566
Q ss_pred ceecccccccC
Q 011688 448 RSLTLESCKVT 458 (479)
Q Consensus 448 ~~L~l~~~~~~ 458 (479)
+.+++++|.++
T Consensus 377 ~~l~l~~N~l~ 387 (457)
T 3bz5_A 377 PKETLTNNSLT 387 (457)
T ss_dssp CCBCCBTTBEE
T ss_pred CccccccCcEE
Confidence 77777777655
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=5e-29 Score=236.10 Aligned_cols=342 Identities=18% Similarity=0.152 Sum_probs=251.7
Q ss_pred ccceeecCCCCCCCchHHHHHHhcCCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEE
Q 011688 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (479)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 111 (479)
+++.+.+..+....- . . ...+++|++|+++++.+++. .+..+++|++|++++| .++.. .++.+++|++|
T Consensus 43 ~L~~L~Ls~n~l~~~--~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM--T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp TCCEEECCSSCCCCC--T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEE
T ss_pred CCCEEEccCCCcccC--h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEE
Confidence 577777776632221 1 1 34588999999999998875 2889999999999995 56664 28889999999
Q ss_pred EcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCC
Q 011688 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191 (479)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 191 (479)
++++|.. +.. + ++.+++|++|++++|.... . .+..+++|++|+++++..+... .+..+++|+.|++++|.
T Consensus 112 ~L~~N~l-~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKL-TKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCC-SCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred ECCCCcC-Cee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence 9999974 332 2 8899999999999975443 2 3778999999999997666543 47788999999999999
Q ss_pred CChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHH
Q 011688 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVN 271 (479)
Q Consensus 192 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (479)
++... +..+++|+.|++++|.+... .+..+++|+.|++++|.+... + +..+++|+.|++++|.+.+..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 88743 78889999999999988764 478889999999999998874 2 778999999999999887643
Q ss_pred HhcCCCCCEEeccCcccC----------hhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHH
Q 011688 272 LTGLCNLKCLELSDTQVG----------SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 341 (479)
Q Consensus 272 ~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (479)
+..+++|+.+++.++.+. ...+ +..+++|+.|++++|......+ ...++|+.|+++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~l~--------- 315 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELDLS--------- 315 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCCCT---------
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEechh---------
Confidence 345677776666554321 1111 2345666666666554322111 122344444433
Q ss_pred HHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCC
Q 011688 342 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 421 (479)
.+++|++|++++|++++. .+..+++|+.|++++|.+.+ ++.|..|.+++| .+.+. ..+.
T Consensus 316 ----~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n-~l~g~-----~~~~ 374 (457)
T 3bz5_A 316 ----QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN-NFEAE-----GQTI 374 (457)
T ss_dssp ----TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT-SEEEE-----EEEE
T ss_pred ----hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC-cEEec-----ceee
Confidence 447899999999999885 27889999999999999876 256677777777 55543 3567
Q ss_pred CCCeeecCCCccCHHHHHcc
Q 011688 422 GLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~l 441 (479)
.|+.+++++|.++...|..+
T Consensus 375 ~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 375 TMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ECCCBCCBTTBEEEECCTTC
T ss_pred ecCccccccCcEEEEcChhH
Confidence 78899999999887655443
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.8e-28 Score=221.62 Aligned_cols=269 Identities=20% Similarity=0.206 Sum_probs=170.0
Q ss_pred CCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEec
Q 011688 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
++++.|+++++.++......+..+++|++|+++++.+....+..+..+++|++|++++|.+...... + .++|+.|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~--~~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-M--PKTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-C--CTTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-h--cccccEEEC
Confidence 4556666666655554444555666666666666655554455566666666666666665543211 1 256777777
Q ss_pred cCCCCChHHHHHHhcCCCCCEEeccCcccCh--hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCC
Q 011688 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..... ...++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCC
Confidence 7776665555566667777777777766643 233455667777777777776654211 11267777777777776
Q ss_pred HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHH
Q 011688 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417 (479)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 417 (479)
...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+... +..+..+++|++|++++| .+....+..+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 66556666777777777777777766665667777788888877777643 445666777888888777 6666554444
Q ss_pred hc------CCCCCeeecCCCccCH--HHHHcccCCCccceecccccc
Q 011688 418 SG------LTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 418 ~~------~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~ 456 (479)
.. .++|+.+++++|++.. +.+..+..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 32 3677788888887754 445667777888888887763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.7e-27 Score=213.83 Aligned_cols=289 Identities=16% Similarity=0.163 Sum_probs=152.3
Q ss_pred CCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEE
Q 011688 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (479)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (479)
+++.++++++.. + ..|..+ .+++++|++++|......+..+..+++|++|++++ +.+....+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l-~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGL-E-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCC-C-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCc-c-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEE
Confidence 456666665542 1 112111 24555555555443333333455555555555555 223333344455555555555
Q ss_pred cccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCCh
Q 011688 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGD 266 (479)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (479)
+++|.++.. +..+ .++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 107 Ls~n~l~~l-------------------------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 107 LSKNQLKEL-------------------------PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCSSCCSBC-------------------------CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCCcCCcc-------------------------Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 555544421 1111 1344445554444444444444444555555555444432
Q ss_pred --HHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHH
Q 011688 267 --EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344 (479)
Q Consensus 267 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (479)
..+..+..+++|+.|++++|.+..... . ..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 122234445555555555554432211 1 12566666666666665555556666677777777766665554456
Q ss_pred hcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhh------cCCCCEEEcCCCCCCCH--HHHHH
Q 011688 345 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLTD--KTLEL 416 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~~~--~~~~~ 416 (479)
..+++|++|++++|.++.. +..+..+++|++|++++|.+++.....+.. .++++.+++++| .+.. ..+..
T Consensus 237 ~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~ 314 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPST 314 (330)
T ss_dssp GGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGG
T ss_pred cCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC-cccccccCccc
Confidence 6677777777777776643 334566777777777777777655544422 367778888887 3432 34456
Q ss_pred HhcCCCCCeeecCCCc
Q 011688 417 ISGLTGLVSLNVSNSR 432 (479)
Q Consensus 417 l~~~~~L~~L~l~~~~ 432 (479)
+..+++++.+++++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 6677788888887763
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=8e-28 Score=219.56 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=151.4
Q ss_pred CCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEe
Q 011688 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (479)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 211 (479)
+++.++++++. +...|..+ .++|++|++++ +.+....+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45666665543 22333322 24566666665 2344444445555566666666655555544445555555555555
Q ss_pred cCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChh
Q 011688 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 291 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 291 (479)
+++.+... +..+. ++|++|++++|.+....+..+..+++|+.|++++|.+... ..
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 55554422 11111 4555555555554444333444445555555554443210 01
Q ss_pred hhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcC
Q 011688 292 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 371 (479)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 371 (479)
.+..+..+ +|+.|++++|.++.... . ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~-~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPK-D--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCS-S--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCccCc-c--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 12223333 55555555554443111 1 12456666666665555444445556666666666666666555556666
Q ss_pred CCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhc------CCCCCeeecCCCccC--HHHHHcccC
Q 011688 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP 443 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~--~~~~~~l~~ 443 (479)
++|+.|++++|.+... +..+..+++|++|++++| .+....+..+.. .++|+.|++++|++. ...+..+..
T Consensus 241 ~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 6666666666666543 344566666777777666 555544444433 356777777777766 445566677
Q ss_pred CCccceecccccc
Q 011688 444 LKNLRSLTLESCK 456 (479)
Q Consensus 444 ~~~L~~L~l~~~~ 456 (479)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7777777777663
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.1e-27 Score=226.62 Aligned_cols=350 Identities=16% Similarity=0.053 Sum_probs=221.1
Q ss_pred cCCCeeEEEeeCCCCCcchhhcccCCCC-------------CCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccH
Q 011688 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121 (479)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 121 (479)
.+++|+.|+++++.+.+..+..++++.+ ++.|++++| .++.... ..++|++|+++++.. +.
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l-~~ 105 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSL-TE 105 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCC-SS
T ss_pred cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcC-Cc
Confidence 4667777777777666555555665554 477777774 3443211 236788888887763 22
Q ss_pred HHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhh
Q 011688 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 201 (479)
Q Consensus 122 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 201 (479)
.|. .+++|++|++++|... ..+.. .++|++|+++++ .+...+ .+.++++|++|++++|.++... .
T Consensus 106 -lp~---~~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n-~l~~lp--~~~~l~~L~~L~l~~N~l~~lp----~ 170 (454)
T 1jl5_A 106 -LPE---LPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNN-QLEKLP--ELQNSSFLKIIDVDNNSLKKLP----D 170 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSSCCSCCC----C
T ss_pred -ccc---ccCCCcEEECCCCccC-cccCC---CCCCCEEECcCC-CCCCCc--ccCCCCCCCEEECCCCcCcccC----C
Confidence 221 3467888888776432 22111 157888888874 344432 4778888888888888776421 1
Q ss_pred cCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEE
Q 011688 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281 (479)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (479)
..++|++|++++|.+... + .+..+++|+.|++++|.+.... . ..++|+.|++++|.+.... .+..+++|++|
T Consensus 171 ~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L 242 (454)
T 1jl5_A 171 LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILEELP--ELQNLPFLTTI 242 (454)
T ss_dssp CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEE
T ss_pred CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC-C---CcCcccEEECcCCcCCccc--ccCCCCCCCEE
Confidence 235788888888877663 3 5777888888888888776522 1 1357888888888766322 26678888888
Q ss_pred eccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccc
Q 011688 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (479)
++++|.+.... ...++|+.|++++|.+.... ..+++|++|++++|.+.+.. ...++|+.|++++|.++
T Consensus 243 ~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 243 YADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIR 310 (454)
T ss_dssp ECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCC
Confidence 88888775422 12477888888888766421 12478888888888776532 12267888888888877
Q ss_pred hhHHHhhhcC-CCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH--HHH
Q 011688 362 DSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGL 438 (479)
Q Consensus 362 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~ 438 (479)
... .+ ++|+.|++++|.+.+. +. .+++|++|++++| .+.. +|. .+++|++|++++|++.. ..|
T Consensus 311 ~i~-----~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N-~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 311 SLC-----DLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFN-HLAE-VPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp EEC-----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSS-CCSC-CCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred ccc-----CCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCC-cccc-ccc---hhhhccEEECCCCCCCcCCCCh
Confidence 532 23 5899999999988763 22 2588999999998 6765 333 47889999999998887 344
Q ss_pred HcccCC-------------CccceecccccccCH
Q 011688 439 RHLKPL-------------KNLRSLTLESCKVTA 459 (479)
Q Consensus 439 ~~l~~~-------------~~L~~L~l~~~~~~~ 459 (479)
..+..+ ++|+.|++++|+++.
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TTCCEEECCC------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 555544 789999999998875
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=3.2e-28 Score=219.65 Aligned_cols=249 Identities=19% Similarity=0.195 Sum_probs=155.5
Q ss_pred CCCcEEEcccCCCCh--HHHHHhhcCCCCCEEEecC-CCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCE
Q 011688 180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLES 256 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 256 (479)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+....|..+..+++|++|++++|.+....+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--------- 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH---------
Confidence 355566666655554 3344555555555555553 4443333444444555555555554444333333
Q ss_pred EeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCC-CCcEEecCCCC
Q 011688 257 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQ 335 (479)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 335 (479)
+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..++ +|++|++++|.
T Consensus 121 ---------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 121 ---------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------------HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 44455555555555555444444555566666666666655544445555555 66667776666
Q ss_pred CCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHH
Q 011688 336 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 415 (479)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 415 (479)
+....+..+..++ |+.|++++|.++...+..+..+++|+.|++++|.+.+..+. +..+++|++|++++| .+.+..|.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~ 262 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCCh
Confidence 5544445555555 78888888877766666777788888888888877755443 566788888888888 67766777
Q ss_pred HHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccc
Q 011688 416 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 456 (479)
Q Consensus 416 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 456 (479)
.+..+++|+.|++++|++++..|.. ..+++|+.+++++|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7788888888888888887655543 677888888888886
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=5.5e-27 Score=214.03 Aligned_cols=244 Identities=20% Similarity=0.176 Sum_probs=164.2
Q ss_pred CCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEE
Q 011688 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (479)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (479)
+++.++++++.. + ..|..+ .++|++|++++|......+..+..+++|++|++++ +.+....+..+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l-~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL-K-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC-S-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc-c-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEE
Confidence 689999999874 2 334333 47999999999876555566899999999999998 457777778899999999999
Q ss_pred cccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCc--hhhHhhhCCCCCCEEeccCCCC
Q 011688 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD--DGCEKFSRLTNLESLNLDSCGI 264 (479)
Q Consensus 187 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 264 (479)
+++|.+...... + .++|++|+++++.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+
T Consensus 109 L~~n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVEIPPN-L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCSCCSS-C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCccCcc-c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999988743322 2 2799999999999887766678899999999999998864 334555555 888888888866
Q ss_pred ChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHH
Q 011688 265 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344 (479)
Q Consensus 265 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (479)
..... .-.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...+ ..+
T Consensus 185 ~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l 260 (332)
T 2ft3_A 185 TGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGL 260 (332)
T ss_dssp SSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTG
T ss_pred CccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhh
Confidence 54211 11246666666666665544445555566666666665555444434444555555555555444221 223
Q ss_pred hcCCCCCEEEcCCCccchh
Q 011688 345 TSLTGLTHLDLFGARITDS 363 (479)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~ 363 (479)
..+++|++|++++|.++..
T Consensus 261 ~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp GGCTTCCEEECCSSCCCBC
T ss_pred hcCccCCEEECCCCCCCcc
Confidence 3444444444444444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.7e-26 Score=211.34 Aligned_cols=255 Identities=23% Similarity=0.267 Sum_probs=142.5
Q ss_pred CCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEec
Q 011688 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNL 259 (479)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 259 (479)
++|+.|+++++.++......+..+++|++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 35666666666555444444555555555555555554443344444555555555555444433333444444555554
Q ss_pred cCCCCChHHHHHHhcCCCCCEEeccCcccChhhh-HhhcCCCCCCEEEccCC-CCChHHHHHhhCCCCCcEEecCCCCCC
Q 011688 260 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
+ +|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.
T Consensus 132 ~------------------------~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 132 L------------------------GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp T------------------------TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred C------------------------CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 4 444432222 23444555555555555 234333344455555566666555555
Q ss_pred HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhh---hhcCCCCEEEcCCCCCCCHH--
Q 011688 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDK-- 412 (479)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~-- 412 (479)
...+..+..+++|++|++++|.+...+...+..+++|+.|++++|.+.+.....+ .....++.+++.++ .+.+.
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l 266 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESL 266 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcch
Confidence 5444445556666666666666655555445556666666666666655332222 23456677777776 55552
Q ss_pred --HHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 413 --TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 413 --~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
.|..+..+++|++|++++|.+..++...+..+++|++|++++|+++.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 45567777888888888887776555556777888888888887664
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.2e-27 Score=215.88 Aligned_cols=259 Identities=16% Similarity=0.123 Sum_probs=191.9
Q ss_pred HHHHHHhcC---CCeeEEEeeCCCCCc--chhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHH
Q 011688 48 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122 (479)
Q Consensus 48 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 122 (479)
|.++.|... .+++.|+++++.+.+ ..+..+.++++|++|++++++.+....+..++.+++|++|++++|. +...
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ 116 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc
Confidence 555555432 689999999999987 6778899999999999996456666667788999999999999987 4556
Q ss_pred HHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCC-CCcEEEcccCCCChHHHHHhh
Q 011688 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLK 201 (479)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~ 201 (479)
.|..+.++++|++|++++|......+..+..+++|++|+++++ .+.+..+..+..++ +|+.|++++|.+.+..+..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 6778899999999999997766567778888899999999884 45545566677777 888888888887766666677
Q ss_pred cCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEE
Q 011688 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281 (479)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (479)
.++ |+.|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 666 88888888876655566777778888888887777654433 5566777777777776665555556667777777
Q ss_pred eccCcccChhhhHhhcCCCCCCEEEccCCC
Q 011688 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTG 311 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (479)
++++|.+.+..+.. ..+++|+.+++.+|.
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77777665443332 455666666666553
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-24 Score=203.87 Aligned_cols=344 Identities=17% Similarity=0.092 Sum_probs=199.3
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCC-CCCcE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK 135 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~ 135 (479)
.++++|+++++.+++... -.++|++|+++++ .+... + ...++|++|++++|.. +. +... ++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n-~l~~l-p---~~~~~L~~L~l~~n~l-~~-----l~~~~~~L~~ 135 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPE----LPPHLESLVASCN-SLTEL-P---ELPQSLKSLLVDNNNL-KA-----LSDLPPLLEY 135 (454)
T ss_dssp HTCSEEECTTSCCSCCCS----CCTTCSEEECCSS-CCSSC-C---CCCTTCCEEECCSSCC-SC-----CCSCCTTCCE
T ss_pred cCCCEEEecCCccccCCC----CcCCCCEEEccCC-cCCcc-c---cccCCCcEEECCCCcc-Cc-----ccCCCCCCCE
Confidence 347888888877664321 2367888888774 45542 2 1346788888888763 22 2222 57888
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCC
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 215 (479)
|++++|... ..+ .+..+++|++|+++++. +...+ . ...+|++|++++|.+... + .++.+++|+.|++++|.
T Consensus 136 L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~-l~~lp-~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 136 LGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS-LKKLP-D---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSCCC-C---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSC
T ss_pred EECcCCCCC-CCc-ccCCCCCCCEEECCCCc-CcccC-C---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCc
Confidence 888886433 344 57788888888888743 44321 1 235788888888877663 2 57778888888888887
Q ss_pred CCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHh
Q 011688 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 295 (479)
Q Consensus 216 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 295 (479)
+... +. ..++|+.|++++|.+... + .+..+++|+.|++++|.+.... ..+++|+.|++++|.+....
T Consensus 207 l~~l-~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~--- 273 (454)
T 1jl5_A 207 LKKL-PD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP--- 273 (454)
T ss_dssp CSSC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC---
T ss_pred CCcC-CC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC---
Confidence 6542 11 235788888888877643 2 3677888888888888665421 13467888888887765421
Q ss_pred hcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcC-CCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 296 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 296 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
...++|+.|++++|.+.... ...++|++|++++|.+... ... ++|++|++++|++++.+. .+++|
T Consensus 274 -~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L 339 (454)
T 1jl5_A 274 -ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPA----LPPRL 339 (454)
T ss_dssp -CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred -cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccccc----cCCcC
Confidence 12467888888888766421 1136788888888877652 223 478888888887775322 25778
Q ss_pred cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCH--HHHHHHhcC-------------CCCCeeecCCCccCHHHHH
Q 011688 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTLELISGL-------------TGLVSLNVSNSRITSAGLR 439 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~~~~~~~ 439 (479)
+.|++++|.+..... .+++|++|++++| .+.. ..|..+..+ ++|+.|++++|++...+.
T Consensus 340 ~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~- 413 (454)
T 1jl5_A 340 ERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD- 413 (454)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC----------------------------
T ss_pred CEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc-
Confidence 888888887775432 3578888888887 5555 344444444 889999999999886321
Q ss_pred cccCCCccceecccccccCHH
Q 011688 440 HLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 440 ~l~~~~~L~~L~l~~~~~~~~ 460 (479)
+ -++++.|.+.+|.+...
T Consensus 414 -i--P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 414 -I--PESVEDLRMNSERVVDP 431 (454)
T ss_dssp ---------------------
T ss_pred -c--hhhHhheeCcCcccCCc
Confidence 1 14677888888876653
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=197.00 Aligned_cols=255 Identities=23% Similarity=0.198 Sum_probs=182.0
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.+++++|+++++.++......|.++++|++|++++| .+....+..+..+++|++|++++|. ++...+..++.+++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 457999999999988777777899999999999984 6777767778899999999999987 45555666889999999
Q ss_pred EEccCcccccccc-ccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCC
Q 011688 136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (479)
Q Consensus 136 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 214 (479)
|++++|....... ..+..+++|++|+++++..+....+..+.++++|+.|++++|.+....+..+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999875443332 367888999999999866677666677888899999999998888776777888889999999998
Q ss_pred CCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhh---hCCCCCCEEeccCCCCChH----HHHHHhcCCCCCEEeccCcc
Q 011688 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SRLTNLESLNLDSCGIGDE----GLVNLTGLCNLKCLELSDTQ 287 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 287 (479)
.+.......+..+++|+.|++++|.+.......+ ...+.++.+++.++.+.+. .+..+..+++|+.|++++|.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 8876655555668888999988887765432221 2345566666666655543 22334455555555555555
Q ss_pred cChhhhHhhcCCCCCCEEEccCCCC
Q 011688 288 VGSSGLRHLSGLTNLESINLSFTGI 312 (479)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (479)
+.......+..+++|+.|++++|.+
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 5433222234445555555554443
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5.2e-25 Score=208.87 Aligned_cols=227 Identities=24% Similarity=0.267 Sum_probs=137.8
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
++++.|+++++.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777777777776665566777777777777777776666666677777777777777665544445566667777777
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCC-CCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (479)
++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+.... .+..+++|++|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 776665555555666666676666663 333333334555666666666666555432 23445556666666665555
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
..+..+..+++|+.|++++|.+....+..+..+++|++|+|++| .+....+..+..+++|+.|++++|++
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 55555555556666666666555555555555555666666555 45544444455555555555555543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.1e-24 Score=207.30 Aligned_cols=226 Identities=24% Similarity=0.261 Sum_probs=125.4
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
++++.|+++++.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46777777777776665666777777777777777776665566666777777777777665544444556666666666
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCC-CCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (479)
++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+.... .+..+++|++|++++|.++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence 666665544445556666666666653 333333333444555555555555544321 23344445555555554444
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCc
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 432 (479)
..+..+.++++|+.|++++|.+....+..+..+++|++|+|++| .+....+..+..+++|+.|++++|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 44444444455555555555444444444444444555555444 4444333334444444444444443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.4e-25 Score=199.88 Aligned_cols=228 Identities=24% Similarity=0.261 Sum_probs=124.4
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHH--HHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEE
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (479)
+++.|+++++.+.......|..+++|+.|++++|.+.... +..+..+++|++|++++|.+.. .+..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 4444444444444333333444455555555554443211 1223345555555555554432 222244555566666
Q ss_pred ccCCCCChHHH-HHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch-hHHHhhhcCCCCcEEEecCCCC
Q 011688 307 LSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGL 384 (479)
Q Consensus 307 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 384 (479)
+++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 65554443222 334555666666666665554444445556666666666666554 2344455666666666666666
Q ss_pred CchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCC-ccceecccccccC
Q 011688 385 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT 458 (479)
Q Consensus 385 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 458 (479)
.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+....+..+..++ +|++|++++|+++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 6655555666666666666666 55554444555666677777776666665555565553 6677777776654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.2e-25 Score=199.82 Aligned_cols=237 Identities=19% Similarity=0.177 Sum_probs=105.6
Q ss_pred CCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEE
Q 011688 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257 (479)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (479)
.+++|+.|+++++.++...+..+..+++|++|++++|.+....+ +..+++|++|++++|.+.... ..++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 34455555555555554444455555555555555555443221 444555555555555443221 22455555
Q ss_pred eccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHh-hCCCCCcEEecCCCCC
Q 011688 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQI 336 (479)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 336 (479)
++++|.+..... ..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 555554433221 123445555555554444333334444445555555544444333332 2344455555544444
Q ss_pred CHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC-HHHHH
Q 011688 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLE 415 (479)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~ 415 (479)
..... ...+++|++|++++|.++..++. +..+++|+.|++++|.+... +..+..+++|+.|++++| .+. ...+.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~ 256 (317)
T 3o53_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRD 256 (317)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHH
T ss_pred ccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHH
Confidence 33311 11244444444444444443222 33444444444444444432 223334444444444444 333 33344
Q ss_pred HHhcCCCCCeeecC
Q 011688 416 LISGLTGLVSLNVS 429 (479)
Q Consensus 416 ~l~~~~~L~~L~l~ 429 (479)
++..+++|+.+++.
T Consensus 257 ~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 257 FFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhccccceEEECC
Confidence 44444444444444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=5.3e-25 Score=196.37 Aligned_cols=203 Identities=22% Similarity=0.260 Sum_probs=109.0
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCC-CChHHHHHHhcCCCCCEEe
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLE 282 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 282 (479)
++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 466777777666665544556666666666666666665555556666666666666664 4443344455555666666
Q ss_pred ccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccch
Q 011688 283 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (479)
+++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|++++|.++.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66655554444445555555555555555544333334445555555555555444333334444555555555554444
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 44444444445555555555444444444444445555555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.7e-24 Score=191.81 Aligned_cols=224 Identities=23% Similarity=0.255 Sum_probs=175.6
Q ss_pred CEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCc
Q 011688 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 286 (479)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 286 (479)
++++.++..+... |. ...++++.|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5667766665543 32 23468999999999888877677888889999999988887666666778888999999888
Q ss_pred c-cChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHH
Q 011688 287 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 287 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (479)
. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.++..++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556677888888888888888877666667778888888888888777665566778888888888888887766
Q ss_pred HhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccC
Q 011688 366 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 366 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66777888888888888888776777778888888888888 777777777888888888888888765
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=8.7e-25 Score=197.76 Aligned_cols=260 Identities=17% Similarity=0.181 Sum_probs=202.1
Q ss_pred CCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEecc
Q 011688 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLD 260 (479)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (479)
.++..++..+.+.......+..+++|++|+++++.+....+..+..+++|+.|++++|.+....+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34455566666655555556677899999999998888777889999999999999998876543 7788999999999
Q ss_pred CCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHH
Q 011688 261 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 340 (479)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (479)
+|.+.. +...++|+.|++++|.+..... ..+++|+.|++++|.+....+..+..+++|++|++++|.+....
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 987653 2345889999999988865543 34678999999999888776667777889999999998888765
Q ss_pred HHHH-hcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhc
Q 011688 341 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 419 (479)
Q Consensus 341 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 419 (479)
+..+ ..+++|++|++++|.++... ....+++|++|++++|.+.+..+ .+..+++|++|++++| .+.. +|..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~-l~~~~~~ 235 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL-IEKALRF 235 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE-ECTTCCC
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccc-hhhHhhc
Confidence 5554 36788999999999887662 22347889999999998887644 3777889999999998 7775 4566777
Q ss_pred CCCCCeeecCCCccC-HHHHHcccCCCccceeccccc
Q 011688 420 LTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 420 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 455 (479)
+++|+.|++++|++. ...+..+..++.|+.++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 889999999999888 556677778888888888755
No 62
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.7e-22 Score=188.28 Aligned_cols=239 Identities=19% Similarity=0.223 Sum_probs=157.3
Q ss_pred HHhhcCCCCCEEEecCCCCCHHHHHH----hhCCCCCcEEEccCCCCCc---hhhH-------hhhCCCCCCEEeccCCC
Q 011688 198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLSD---DGCE-------KFSRLTNLESLNLDSCG 263 (479)
Q Consensus 198 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~---~~~~-------~~~~~~~L~~L~l~~~~ 263 (479)
..+..+++|++|++++|.+....+.. +..+++|+.|++++|.+.. ..+. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34567889999999999888765544 5578899999998875432 2222 23577888888888887
Q ss_pred CCh----HHHHHHhcCCCCCEEeccCcccChhhhHhhc----CC---------CCCCEEEccCCCCChHHH----HHhhC
Q 011688 264 IGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL---------TNLESINLSFTGISDGSL----RKLAG 322 (479)
Q Consensus 264 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~~~~----~~l~~ 322 (479)
+.. ..+..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++.... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 776 3455667788888888888877654443332 22 777788887777763322 24556
Q ss_pred CCCCcEEecCCCCCCHHH----HH-HHhcCCCCCEEEcCCCccc----hhHHHhhhcCCCCcEEEecCCCCCchhHH---
Q 011688 323 LSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK--- 390 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 390 (479)
+++|++|++++|.+.... .. .+..+++|++|++++|.++ ...+..+..+++|+.|++++|.+.+.+..
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 777777777777776432 12 4456677777777777765 33344556677777777777777665332
Q ss_pred -hhhh--cCCCCEEEcCCCCCCCH----HHHHHH-hcCCCCCeeecCCCccCHHH
Q 011688 391 -HIKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAG 437 (479)
Q Consensus 391 -~l~~--~~~L~~L~l~~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~~ 437 (479)
.+.. +++|++|+|++| .+.. .++..+ .++++|+.|++++|++....
T Consensus 266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3322 667777777777 5666 345554 44677777777777766544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.6e-23 Score=199.47 Aligned_cols=227 Identities=19% Similarity=0.168 Sum_probs=111.4
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|++++|.++...+..|.++++|+.|++++ +.+....+..|..+++|++|++++|. ++...+..+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 3455555555555544444555555555555555 24444444445555555555555554 233333334455555555
Q ss_pred EccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCC
Q 011688 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (479)
++++|.........+..+++|++|++++++.+.......+.++++|+.|++++|.++.. ..
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~----------------- 213 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PN----------------- 213 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CC-----------------
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--cc-----------------
Confidence 55554433323334445555555555554444444434444555555555555544432 12
Q ss_pred CHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhh
Q 011688 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 296 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 296 (479)
+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+
T Consensus 214 -------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 214 -------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp -------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred -------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 3344455555555555544444445555555555555554444434444455555555555555544444444
Q ss_pred cCCCCCCEEEccCCC
Q 011688 297 SGLTNLESINLSFTG 311 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~ 311 (479)
..+++|+.|++++|.
T Consensus 287 ~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 287 TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEccCCC
Confidence 555555555555553
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=198.13 Aligned_cols=227 Identities=21% Similarity=0.197 Sum_probs=118.0
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEE
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (479)
++++.|+++++.+.......|.++++|++|++++| .+....+..|..+++|++|++++|. ++...+..|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCcee
Confidence 45666666666665555555666666666666663 4555555555666666666666654 233333445556666666
Q ss_pred EccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCC
Q 011688 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (479)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 216 (479)
++++|.........+..+++|++|++++++.+.......+.++++|+.|++++|.++.. ..+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCcc
Confidence 66655433333344555566666666655555544444555555666666655555432 1244445555555555554
Q ss_pred CHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcc
Q 011688 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 287 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 287 (479)
....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++......+..+++|+.|++++|.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 44444444445555555555555444444444444455555555444443333333444444444444443
No 65
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.8e-22 Score=181.41 Aligned_cols=249 Identities=17% Similarity=0.199 Sum_probs=125.4
Q ss_pred CcEEEcccCCCChHHHHHhhcC--CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCch-hhHhhhCCCCCCEEe
Q 011688 182 LKSLQISCSKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSRLTNLESLN 258 (479)
Q Consensus 182 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 258 (479)
++.++++++.+.. ..+..+ ++++.+++.++.+....+ .+..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5566666665552 223333 566666666654443322 233455666666666655443 334455556666666
Q ss_pred ccCCCCChHHHHHHhcCCCCCEEeccCc-ccChh-hhHhhcCCCCCCEEEccCC-CCChH-HHHHhhCCC-CCcEEecCC
Q 011688 259 LDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLDA 333 (479)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~ 333 (479)
+++|.+.+..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .+++. ....+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666555555555555666666666655 34432 2233455556666666665 55543 233344455 666666655
Q ss_pred C--CCCH-HHHHHHhcCCCCCEEEcCCCc-cchhHHHhhhcCCCCcEEEecCC-CCCchhHHhhhhcCCCCEEEcCCCCC
Q 011688 334 R--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCN 408 (479)
Q Consensus 334 ~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~ 408 (479)
| .+.+ ..+..+..+++|++|++++|. ++...+..+..+++|+.|++++| .+.......+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--
Confidence 5 3432 222334455566666665555 44444444555556666666555 233333334455555666666555
Q ss_pred CCHHHHHHHhcCCCCCeeecCCCccCHHHH
Q 011688 409 LTDKTLELISGLTGLVSLNVSNSRITSAGL 438 (479)
Q Consensus 409 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 438 (479)
+.......+. ..++.|++++|.++...+
T Consensus 283 i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 283 VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 3332222222 123334455555555444
No 66
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3e-21 Score=179.87 Aligned_cols=256 Identities=17% Similarity=0.200 Sum_probs=175.6
Q ss_pred ccccCCCCCcEEEcccCCCChHHHHH----hhcCCCCCEEEecCCCCC---HHHHH-------HhhCCCCCcEEEccCCC
Q 011688 174 KPLSGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVT---AACLD-------SLSALGSLFYLNLNRCQ 239 (479)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~~~ 239 (479)
..+..+++|+.|++++|.+....+.. +..+++|++|+++++.+. ...|. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34556788888888888887765544 557888888888886332 22232 34678888888888888
Q ss_pred CCc----hhhHhhhCCCCCCEEeccCCCCChHHHHHHh----cC---------CCCCEEeccCcccChhhh----HhhcC
Q 011688 240 LSD----DGCEKFSRLTNLESLNLDSCGIGDEGLVNLT----GL---------CNLKCLELSDTQVGSSGL----RHLSG 298 (479)
Q Consensus 240 ~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~~~~----~~~~~ 298 (479)
+.. ..+..+..+++|+.|++++|.++...+..+. .+ ++|++|++++|.++.... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 876 3455677788888888888887654444333 33 788888888888764333 34567
Q ss_pred CCCCCEEEccCCCCChHH----HH-HhhCCCCCcEEecCCCCCCH----HHHHHHhcCCCCCEEEcCCCccchhHH----
Q 011688 299 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITD----TGLAALTSLTGLTHLDLFGARITDSGA---- 365 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~---- 365 (479)
+++|++|++++|.+.... .. .+..+++|++|++++|.+++ ..+..+..+++|++|++++|.++..+.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 788888888888887532 22 56678888888888888863 334556678888888888888876633
Q ss_pred Hhhh--cCCCCcEEEecCCCCCch----hHHhh-hhcCCCCEEEcCCCCCCCHHHH--HHHh-cCCCCCeeecCC
Q 011688 366 AYLR--NFKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELIS-GLTGLVSLNVSN 430 (479)
Q Consensus 366 ~~~~--~~~~L~~L~l~~~~~~~~----~~~~l-~~~~~L~~L~l~~~~~~~~~~~--~~l~-~~~~L~~L~l~~ 430 (479)
..+. .+++|+.|++++|.+... .+..+ ..+++|++|++++| .+....+ ..+. .++.++.+.+..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 3332 278888888888888872 34444 55788888888888 5665442 2222 244444444443
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-23 Score=189.12 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=121.3
Q ss_pred CCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHH--HHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcE
Q 011688 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG--IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (479)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 232 (479)
++|++|+++++ .+.......+.++++|+.|+++++.+.... +..+..+++|++|+++++.+... +..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCE
Confidence 35555555552 233333333455555555555555544221 12233345555555555443321 222334444444
Q ss_pred EEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCC
Q 011688 233 LNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 312 (479)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (479)
|++++|.+..... ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 106 L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 106 LDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp EECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred EECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 4444444333221 02233444555555555444433344444555555555555544
Q ss_pred Ch-HHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHh
Q 011688 313 SD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 391 (479)
Q Consensus 313 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 391 (479)
.. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 33 22334455666666666666666554455566677777777777776665555667777777888777777766666
Q ss_pred hhhcC-CCCEEEcCCC
Q 011688 392 IKDLS-SLTLLNLSQN 406 (479)
Q Consensus 392 l~~~~-~L~~L~l~~~ 406 (479)
+..++ +|++|++++|
T Consensus 243 ~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCCCTTCCEEECTTC
T ss_pred HHhhhccCCEEEccCC
Confidence 66664 7888888877
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=6.4e-24 Score=192.55 Aligned_cols=235 Identities=17% Similarity=0.141 Sum_probs=149.9
Q ss_pred cCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEE
Q 011688 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 281 (479)
Q Consensus 202 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 281 (479)
..++++.|+++++.+... |..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 346778888888776633 555666777888888777776 34455667777777777777665 334446667777777
Q ss_pred eccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccc
Q 011688 282 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 361 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (479)
++++|......+..+.. ..+. ..+..+++|++|++++|.+... +..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC
Confidence 77765544333322211 0000 0123356666666666665532 234556677777777777666
Q ss_pred hhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcc
Q 011688 362 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 441 (479)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 441 (479)
..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+....|..+..+++|+.|++++|++....|..+
T Consensus 220 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred cCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 5433 4566777777777777766666666677777777777777 4555566667777777777777777776667777
Q ss_pred cCCCccceeccccccc
Q 011688 442 KPLKNLRSLTLESCKV 457 (479)
Q Consensus 442 ~~~~~L~~L~l~~~~~ 457 (479)
..+++|+.+++..+.+
T Consensus 298 ~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGSCTTCEEECCGGGS
T ss_pred hhccCceEEeCCHHHH
Confidence 7777777777776644
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9.9e-22 Score=179.85 Aligned_cols=249 Identities=22% Similarity=0.240 Sum_probs=178.4
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCC--CCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChH-HHHHHhcCCCCCE
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDE-GLVNLTGLCNLKC 280 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 280 (479)
..++.++++++.+.. ..+..+ ++++.+++.++.+....+. +..+++|+.|++++|.+.+. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 347788888877663 334444 6888888888876655433 44678888888888877655 5566778888888
Q ss_pred EeccCcccChhhhHhhcCCCCCCEEEccCC-CCChH-HHHHhhCCCCCcEEecCCC-CCCHH-HHHHHhcCC-CCCEEEc
Q 011688 281 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDT-GLAALTSLT-GLTHLDL 355 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l 355 (479)
|++++|.+....+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888887777777778888888888888 67764 4444677888888888888 77765 345566788 8888888
Q ss_pred CCC--ccc-hhHHHhhhcCCCCcEEEecCCC-CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCC
Q 011688 356 FGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431 (479)
Q Consensus 356 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 431 (479)
++| .++ ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|..+.......+.++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 888 454 3334556778888888888888 666666677788888888888886555554456777888888888888
Q ss_pred ccCHHHHHcccCCCccceecccccccCH
Q 011688 432 RITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 432 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+.......+. ..++.|++++|+++.
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred -cCHHHHHHHH--hhCcceEEecccCcc
Confidence 4443333222 246666678877764
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3e-22 Score=184.63 Aligned_cols=222 Identities=19% Similarity=0.242 Sum_probs=113.5
Q ss_pred EEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHH----HHhhCCC-CCcEEEccCCCCCchhhHhhhCC-----CCC
Q 011688 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSRL-----TNL 254 (479)
Q Consensus 185 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 254 (479)
+.++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666666655555555567777777776655444 5556666 67777777776655444434332 666
Q ss_pred CEEeccCCCCChHHHH----HHhcC-CCCCEEeccCcccChhhhHhh----cC-CCCCCEEEccCCCCChHH----HHHh
Q 011688 255 ESLNLDSCGIGDEGLV----NLTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDGS----LRKL 320 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~l 320 (479)
++|++++|.+++..+. .+..+ ++|++|++++|.++......+ .. .++|++|++++|.+++.. ...+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 6777766655443332 23333 566666666666554443332 22 245666666666554322 2223
Q ss_pred hCCC-CCcEEecCCCCCCHHHHHH----HhcC-CCCCEEEcCCCccchhH----HHhhhc-CCCCcEEEecCCCCCchhH
Q 011688 321 AGLS-SLKSLNLDARQITDTGLAA----LTSL-TGLTHLDLFGARITDSG----AAYLRN-FKNLRSLEICGGGLTDAGV 389 (479)
Q Consensus 321 ~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~ 389 (479)
..++ +|++|++++|.+.+..... +..+ ++|++|++++|.++..+ +..+.. .++|++|++++|.+.+.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 5555555555554433222 2233 35555555555554421 112222 2355555555555544333
Q ss_pred Hh----hhhcCCCCEEEcCCC
Q 011688 390 KH----IKDLSSLTLLNLSQN 406 (479)
Q Consensus 390 ~~----l~~~~~L~~L~l~~~ 406 (479)
.. +..+++|++|++++|
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhcCCCccEEEeccC
Confidence 22 223355555555555
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1e-23 Score=191.15 Aligned_cols=236 Identities=21% Similarity=0.211 Sum_probs=168.0
Q ss_pred CCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEE
Q 011688 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257 (479)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (479)
..++++.|+++++.+.. .+..+..+++|++|+++++.+. ..|..+..+++|++|++++|.+. ..+..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 35789999999998874 3455778999999999999988 55778899999999999999988 446778899999999
Q ss_pred eccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCC
Q 011688 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 337 (479)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (479)
++++|......+..+. ...+. ..+..+++|+.|++++|.++. .+..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~------~~~~~---------~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLA------STDAS---------GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSE------EEC-C---------CCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHh------hccch---------hhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCC
Confidence 9999755433222221 11111 123445666666666665552 3344556666667776666665
Q ss_pred HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHH
Q 011688 338 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 417 (479)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l 417 (479)
... ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+...+|..+
T Consensus 220 ~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~iP~~l 297 (328)
T 4fcg_A 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC-VNLSRLPSLI 297 (328)
T ss_dssp CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC-TTCCCCCGGG
T ss_pred cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC-CchhhccHHH
Confidence 433 24566777777777777766666666777788888888887777666667777888888888887 5555677777
Q ss_pred hcCCCCCeeecCCCccC
Q 011688 418 SGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 418 ~~~~~L~~L~l~~~~~~ 434 (479)
..+++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 88888888887765443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=5.7e-25 Score=198.48 Aligned_cols=253 Identities=18% Similarity=0.181 Sum_probs=135.4
Q ss_pred cccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCH-HHHH-------HhhCCCCCcEEEccCCCCCchhhH
Q 011688 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD-------SLSALGSLFYLNLNRCQLSDDGCE 246 (479)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-------~l~~~~~L~~L~l~~~~~~~~~~~ 246 (479)
.+...++|+.++++++.+ . .+..+... |+.|+++++.+.. ..+. .+..+++|++|++++|.+....+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 344556777787777776 2 22222211 4555555543311 1111 222577888888888877655444
Q ss_pred hh--hCCCCCCEEeccCCCCChHHHHHHhcC-----CCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChH--HH
Q 011688 247 KF--SRLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG--SL 317 (479)
Q Consensus 247 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 317 (479)
.+ ..+++|+.|++++|.+.+. +..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+... .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 43 6677788888887766554 3333333 6666666666666555555555566666666666654432 12
Q ss_pred HHh--hCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhH-Hhhhh
Q 011688 318 RKL--AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKD 394 (479)
Q Consensus 318 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~ 394 (479)
..+ ..+++|++|++++|.+.... ......+..+++|+.|++++|.+.+..+ ..+..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 222 34455555555554444111 1112223344555555555555544331 22333
Q ss_pred cCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 395 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+++|++|++++| .+.. +|..+. ++|++|++++|+++.. +. +..+++|++|++++|++++
T Consensus 252 l~~L~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 456666666665 4442 232222 5666667766666665 22 6666777777777776654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1e-22 Score=194.58 Aligned_cols=235 Identities=18% Similarity=0.193 Sum_probs=153.3
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
++|+.|+++++.+....+..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ...++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEEC
Confidence 377888888777776656677777778888887777765443 66777777777777755432 23467777777
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh-cCCCCCEEEcCCCccch
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITD 362 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 362 (479)
++|.+..... ..+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..+. .+++|+.|++++|.++.
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7776655433 2356677777777777666555666677777777777777665444443 56777777777777665
Q ss_pred hHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccC-HHHHHcc
Q 011688 363 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHL 441 (479)
Q Consensus 363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l 441 (479)
... ...+++|+.|++++|.+++.++. +..+++|+.|++++| .+.. +|..+..+++|+.|++++|++. ...+..+
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 522 23466777777777777665333 566677777777777 5554 4444566677777777777666 3344555
Q ss_pred cCCCccceeccc
Q 011688 442 KPLKNLRSLTLE 453 (479)
Q Consensus 442 ~~~~~L~~L~l~ 453 (479)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 566666666554
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=4.1e-24 Score=192.91 Aligned_cols=245 Identities=20% Similarity=0.168 Sum_probs=165.9
Q ss_pred ccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCCh-HHH-------HHhhcCCCCCEEEecCCCCCHHHHH
Q 011688 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI-------AYLKGLQKLTLLNLEGCPVTAACLD 222 (479)
Q Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~ 222 (479)
+...++|++|+++++.. . .+..+... |+.|+++++.+.. ..+ ..+..+++|++|+++++.+....|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 44567899999988554 2 23333322 7777777776632 111 1223789999999999988765566
Q ss_pred Hh--hCCCCCcEEEccCCCCCchhhHhhhCC-----CCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChh--hh
Q 011688 223 SL--SALGSLFYLNLNRCQLSDDGCEKFSRL-----TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GL 293 (479)
Q Consensus 223 ~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 293 (479)
.+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 55 7899999999999998876 4555554 8999999999998877777788999999999999987654 23
Q ss_pred Hhh--cCCCCCCEEEccCCCCCh---HHHHHhhCCCCCcEEecCCCCCCHHHH-HHHhcCCCCCEEEcCCCccchhHHHh
Q 011688 294 RHL--SGLTNLESINLSFTGISD---GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAY 367 (479)
Q Consensus 294 ~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 367 (479)
..+ ..+++|++|++++|.+.. .....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++..+. .
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-G 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS-S
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh-h
Confidence 344 789999999999999883 333444567788888888877665431 223345566666666666553322 1
Q ss_pred hhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 368 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 368 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+. ++|+.|++++|.+++. +. +..+++|++|++++|
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 21 4555555555555544 22 444555555555555
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=3.9e-23 Score=197.54 Aligned_cols=237 Identities=19% Similarity=0.177 Sum_probs=194.7
Q ss_pred CCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEE
Q 011688 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESL 257 (479)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 257 (479)
.+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.... ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44589999999999988777788999999999999998876544 888999999999999876533 34889999
Q ss_pred eccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhh-CCCCCcEEecCCCCC
Q 011688 258 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQI 336 (479)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 336 (479)
++++|.+....+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999998765443 3568899999999999887777788899999999999998876666665 689999999999998
Q ss_pred CHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC-HHHHH
Q 011688 337 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLE 415 (479)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~ 415 (479)
.+... ...+++|+.|++++|.+++.++. +..+++|+.|++++|.+.+. +..+..+++|+.|++++| .+. ...+.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~~ 256 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRD 256 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchHH
Confidence 77632 33588999999999999887554 77889999999999999875 555777899999999999 566 56777
Q ss_pred HHhcCCCCCeeecC
Q 011688 416 LISGLTGLVSLNVS 429 (479)
Q Consensus 416 ~l~~~~~L~~L~l~ 429 (479)
++..++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 88888888888875
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.2e-21 Score=175.86 Aligned_cols=252 Identities=18% Similarity=0.222 Sum_probs=194.5
Q ss_pred EEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhh----HhhhCCC-CCCEEeccCCCCChHHHHHHhcC-----CC
Q 011688 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSRLT-NLESLNLDSCGIGDEGLVNLTGL-----CN 277 (479)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 277 (479)
.++++.+.+....+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888878777777789999999999887665 6777888 89999999998877655555443 89
Q ss_pred CCEEeccCcccChhhhHh----hcCC-CCCCEEEccCCCCChHHHHHhh----C-CCCCcEEecCCCCCCHHHH----HH
Q 011688 278 LKCLELSDTQVGSSGLRH----LSGL-TNLESINLSFTGISDGSLRKLA----G-LSSLKSLNLDARQITDTGL----AA 343 (479)
Q Consensus 278 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~----~~ 343 (479)
|++|++++|.++...+.. +..+ ++|+.|++++|.++......+. . .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987665543 4455 8999999999988776554443 3 3699999999999885433 34
Q ss_pred HhcCC-CCCEEEcCCCccchhHHHh----hhcC-CCCcEEEecCCCCCchhH----Hhhhh-cCCCCEEEcCCCCCCCHH
Q 011688 344 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGV----KHIKD-LSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 344 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~ 412 (479)
+...+ +|++|++++|.++..++.. +..+ ++|+.|++++|.+.+.+. ..+.. .++|++|++++| .+...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence 45555 9999999999998765543 3455 599999999999987433 34444 469999999999 77765
Q ss_pred HHH----HHhcCCCCCeeecCCCccCHHH-------HHcccCCCccceecccccccCHH
Q 011688 413 TLE----LISGLTGLVSLNVSNSRITSAG-------LRHLKPLKNLRSLTLESCKVTAN 460 (479)
Q Consensus 413 ~~~----~l~~~~~L~~L~l~~~~~~~~~-------~~~l~~~~~L~~L~l~~~~~~~~ 460 (479)
.+. .+..+++|+.|++++|.+..+. ...+..+++|++|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 443 3456899999999999843322 24567889999999999998875
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=6e-21 Score=185.98 Aligned_cols=266 Identities=20% Similarity=0.125 Sum_probs=203.5
Q ss_pred CCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEE
Q 011688 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210 (479)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 210 (479)
.++++|+++++. +...|..+. ++|++|+++++. ++..+. .+++|+.|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 469999999865 445555554 799999999854 553332 57899999999998875332 678999999
Q ss_pred ecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccCh
Q 011688 211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 290 (479)
Q Consensus 211 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 290 (479)
+++|.+... +. .+++|+.|++++|.+..... .+++|++|++++|.+.... ..+++|+.|++.+|.+..
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 999987764 22 56899999999998876432 3588999999999776432 245789999999988865
Q ss_pred hhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhc
Q 011688 291 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 370 (479)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 370 (479)
.. ..+++|+.|++++|.+.... ..+++|+.|++++|.+.... ..+++|+.|++++|.++..+ ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 33 55788999999999876522 13588999999998877543 13578999999999888754 45
Q ss_pred CCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHccc
Q 011688 371 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 442 (479)
Q Consensus 371 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 442 (479)
+++|+.|++++|.++.... .+++|+.|++++| .+.. +|..+.++++|+.|++++|++....+..+.
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 6889999999998876533 4688999999998 7774 567788899999999999999887776554
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3.9e-21 Score=187.29 Aligned_cols=269 Identities=20% Similarity=0.100 Sum_probs=211.3
Q ss_pred CCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCCCCcEE
Q 011688 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (479)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (479)
.+++.|+++++.. + ..|..+. ++|++|++++|.. ...+. .+++|++|+++++. ++..+. .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L-~-~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGL-T-TLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCC-S-CCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCc-C-ccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEE
Confidence 4699999999874 3 3344443 7999999999753 34443 57899999999954 554332 67999999
Q ss_pred EcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCC
Q 011688 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIG 265 (479)
Q Consensus 186 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (479)
++++|.++.... .+++|+.|++++|.+... |. .+++|++|++++|.+.... . ..++|+.|++++|.+.
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCC
Confidence 999998876432 568999999999987763 22 3589999999999887642 1 3578999999999876
Q ss_pred hHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh
Q 011688 266 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 345 (479)
Q Consensus 266 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (479)
... ..+++|+.|++++|.+.... ...++|+.|++++|.++... ..+++|++|++++|.+...+ .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred CCc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence 533 46789999999999886532 23589999999999877532 23589999999999987744 4
Q ss_pred cCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCC
Q 011688 346 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 421 (479)
.+++|+.|++++|.++..+. .+++|+.|++++|.+... +..+..+++|+.|++++| .+....+..+..++
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhcc
Confidence 67899999999999987544 578999999999999855 667889999999999999 79988888776543
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.4e-22 Score=177.24 Aligned_cols=204 Identities=24% Similarity=0.240 Sum_probs=108.2
Q ss_pred CCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEc
Q 011688 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
+++++|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777776655556666777777777777665544444566666666666666665555555566666666666
Q ss_pred cCCCCChHHHHHhhCCCCCcEEecCCCCCCHHH-HHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc----EEEecCC
Q 011688 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR----SLEICGG 382 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 382 (479)
++|.+.......+..+++|++|++++|.+.... +..+..+++|++|++++|.++...+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666555433333445555555555555544321 23344455555555555555444333333333333 4455555
Q ss_pred CCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 383 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
.+.+..+..+. ..+|++|++++| .+....+..+..+++|+.|++++|++
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 54443322222 224555555544 34433333334444455555544443
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.2e-22 Score=173.95 Aligned_cols=200 Identities=19% Similarity=0.205 Sum_probs=90.5
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
..+.++++++.+.... ..+ .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3455555555544321 111 1345555555555444333334455555555555555543333334445555555555
Q ss_pred CCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchh
Q 011688 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
+|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+...++..+..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 55444433333444444555555444444433333344444444444444444443333444444444444444444433
Q ss_pred HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCc
Q 011688 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 432 (479)
+..+..+++|++|++++| .+....+..+..+++|+.|++++|+
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 333444444444444444 3333333333344444444444443
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.6e-21 Score=172.99 Aligned_cols=201 Identities=21% Similarity=0.225 Sum_probs=118.2
Q ss_pred CCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEecc
Q 011688 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284 (479)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (479)
+|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666655544456666666666666666665554556666666666666666655444455566666666666
Q ss_pred CcccChhhhHhhcCCCCCCEEEccCCCCChHH-HHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCC----EEEcCCCc
Q 011688 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT----HLDLFGAR 359 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~ 359 (479)
+|.+.......+..+++|++|++++|.+.... +..+..+++|++|++++|.+.......+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 66665544444556666666666666655422 44555666666666666666554333333333333 56666666
Q ss_pred cchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+....+..+. ..+|+.|++++|.++......+..+++|++|++++|
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 6655443332 235666666666666554445556666666666666
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.5e-21 Score=168.64 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=151.3
Q ss_pred CCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEecc
Q 011688 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 284 (479)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 284 (479)
..++++++++.+... |..+ .++++.|+++++.+....+..|..+++|++|+++++.+.......|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 467788877766643 3222 2578888888888777666677788888888888887765555556678888888888
Q ss_pred CcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhH
Q 011688 285 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 364 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (479)
+|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88877666666777888888888888777766666777888888888888877766555677888888888888888776
Q ss_pred HHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 365 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 666777888888888888887766666777888888888887
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=5.1e-20 Score=165.44 Aligned_cols=194 Identities=28% Similarity=0.391 Sum_probs=150.4
Q ss_pred CCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEE
Q 011688 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456889999998887764 257778899999999887766544 77888999999998887654 357778888999
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC
Q 011688 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
++++|.+.... .+..+++|++|++++|.+..... +..+++|+.|++++|.++...+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99888877643 37778888888888888776543 6678888888888888876544 677888888888888887
Q ss_pred chhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHH
Q 011688 386 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 436 (479)
+..+ +..+++|++|++++| .+....+ +..+++|+.|++++|++...
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred cChh--hcCCCCCCEEEccCC-ccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 6543 677888888888888 6766543 67788888888888887653
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=6.9e-21 Score=168.15 Aligned_cols=208 Identities=21% Similarity=0.201 Sum_probs=139.0
Q ss_pred CCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEE
Q 011688 227 LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 306 (479)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (479)
+++|+.|.+.++.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 44555555555554432 2344556666666666655432 2355666666666666666555555566677777777
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCc
Q 011688 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 77776665555556667777777777777766555556677888888888888777666667778888888888888877
Q ss_pred hhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCc
Q 011688 387 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 446 (479)
Q Consensus 387 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 446 (479)
..+..+..+++|++|++++| .+. +.+++|+.++++.|.+.+..|..+..++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 76666777888888888888 343 34677888888888777766655554443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.3e-20 Score=166.44 Aligned_cols=198 Identities=21% Similarity=0.210 Sum_probs=149.3
Q ss_pred hCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcE
Q 011688 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 328 (479)
..+++|+.|++.++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.......+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45678888888888665432 366788888888888877653 36677888888888888877666666777888888
Q ss_pred EecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCC
Q 011688 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408 (479)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 408 (479)
|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-Q 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-c
Confidence 888888877666556677788888888888887776666777888888888888887766666677788888888888 6
Q ss_pred CCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 409 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 409 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+....+..+..+++|+.|++++|++.. .+++|+.+++..|.++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 235 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCC
Confidence 777666667778888888888887653 4667777777777554
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=6.2e-21 Score=171.98 Aligned_cols=229 Identities=18% Similarity=0.119 Sum_probs=129.0
Q ss_pred CCCCEEEecCCCCCHHHHHH---hhCCCCCcEEEccCCCCCchhhHhh--hCCCCCCEEeccCCCCChH----HHHHHhc
Q 011688 204 QKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SRLTNLESLNLDSCGIGDE----GLVNLTG 274 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~ 274 (479)
..++.+.+.++.+....... +...++|++|++++|.+....+..+ ..+++|++|++++|.+... ....+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 46788888888776542222 2234679999999988877666655 6788888898888877642 1233445
Q ss_pred CCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH----HHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCC
Q 011688 275 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 350 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 350 (479)
+++|++|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+......
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------- 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-------- 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH--------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH--------
Confidence 6777777777776655555556666666666666665543211 1112345555555555544322111
Q ss_pred CEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhc---CCCCEEEcCCCCCCCHHHHHHHhcCCCCCeee
Q 011688 351 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 427 (479)
....+..+++|++|++++|.+.+..+..+..+ ++|++|++++| .+.. +|..+ .++|+.|+
T Consensus 216 -------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~ 278 (310)
T 4glp_A 216 -------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-VPKGL--PAKLRVLD 278 (310)
T ss_dssp -------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-CCSCC--CSCCSCEE
T ss_pred -------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCc-hhhhh--cCCCCEEE
Confidence 00112344555555555555544433323222 45555666555 4442 23222 25666666
Q ss_pred cCCCccCHHHHHcccCCCccceecccccccCH
Q 011688 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 428 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 459 (479)
+++|.++..+ .+..+++|+.|++++|++++
T Consensus 279 Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSNRLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred CCCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 6666665531 24556667777777776654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.4e-19 Score=161.04 Aligned_cols=193 Identities=28% Similarity=0.412 Sum_probs=154.2
Q ss_pred hcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCE
Q 011688 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 280 (479)
Q Consensus 201 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 280 (479)
..+++|+.|+++++.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 3457888999998877663 2 57788999999999998877554 778899999999998776542 4778889999
Q ss_pred EeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCcc
Q 011688 281 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 360 (479)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (479)
|++++|.+.... .+..+++|+.|++++|.+..... +..+++|++|++++|.+.+... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999998886543 37888999999999998876543 7788999999999988877543 67888999999999988
Q ss_pred chhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC
Q 011688 361 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (479)
+...+ +..+++|+.|++++|.+.+.. .+..+++|++|++++| .+.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eee
Confidence 87654 678889999999999888764 3778899999999988 443
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3e-20 Score=165.18 Aligned_cols=202 Identities=20% Similarity=0.173 Sum_probs=113.5
Q ss_pred hhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCC
Q 011688 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (479)
+..+++++.+++.++.+...... + .+.++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 34566777777777666543321 1 2567777777776665555556666777777777766644322 14566666
Q ss_pred EEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCC
Q 011688 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
.|++++|.+... +..+..+++|++|++++|.+....+..+..+++|++|++++|+++..++..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 666666655432 2233445566666666665555444445555566666666665555544445555566666666655
Q ss_pred CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 384 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
+.......+..+++|++|++++| .+.. +|..+..+++|+.+++++|++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCc
Confidence 55544444455555666666555 4443 333344445555555555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=162.79 Aligned_cols=205 Identities=17% Similarity=0.108 Sum_probs=139.1
Q ss_pred CCCCcEEEcccCCCChHHHHH---hhcCCCCCEEEecCCCCCHHHHHHh--hCCCCCcEEEccCCCCCchhh----Hhhh
Q 011688 179 LTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGC----EKFS 249 (479)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~ 249 (479)
...++.+.+..+.+....... ...+++|++|++++|.+....+..+ ..+++|+.|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 346788888888776543322 2345779999999998877666666 789999999999999876322 3445
Q ss_pred CCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhh----HhhcCCCCCCEEEccCCCCChHHHH---HhhC
Q 011688 250 RLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLR---KLAG 322 (479)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~ 322 (479)
.+++|++|++++|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 78999999999998877777778899999999999998754321 2236789999999999998743321 2455
Q ss_pred CCCCcEEecCCCCCCHHHHHHHhcC---CCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCc
Q 011688 323 LSSLKSLNLDARQITDTGLAALTSL---TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
+++|++|++++|.+.+..+..+..+ ++|++|++++|.++..+. .+ .++|+.|++++|.+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-GL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-CC--CSCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-hh--cCCCCEEECCCCcCCC
Confidence 6777777777777655432223332 455555555555543211 11 1344444444444443
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=9.3e-20 Score=162.01 Aligned_cols=201 Identities=23% Similarity=0.197 Sum_probs=170.1
Q ss_pred hhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCC
Q 011688 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLK 279 (479)
Q Consensus 200 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 279 (479)
+.+++++++++++++.+... |..+ .++++.|++++|.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 45678999999999887754 3333 3689999999999988877889999999999999998875433 26789999
Q ss_pred EEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCc
Q 011688 280 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 359 (479)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (479)
.|++++|.+.. .+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999998863 34456789999999999999987776778889999999999999988777777889999999999999
Q ss_pred cchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCC
Q 011688 360 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 407 (479)
++..+...+..+++|+.|++++|.+... +..+...++|+.+++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9988777788899999999999999865 4555667899999999983
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.3e-20 Score=163.20 Aligned_cols=197 Identities=19% Similarity=0.203 Sum_probs=112.0
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCC-CChHHHHHHhcCCCCCEEeccC-cccChhhhHhhcCCCCCCEEE
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCG-IGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESIN 306 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 306 (479)
+++.|+++++.+....+..|..+++|+.|++++|. +.......|..+++|++|++++ |.+.......+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66667776666665555556666666666666664 5444433445555555555555 555443334444555555555
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCC---EEEcCCC-ccchhHHHhhhcCCCCc-EEEecC
Q 011688 307 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICG 381 (479)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~ 381 (479)
+++|.+. ..+. +..+++|+ +|++++| .++...+..+..+++|+ .|++++
T Consensus 112 l~~n~l~------------------------~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLK------------------------MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCC------------------------SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCc------------------------cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 5555443 3211 33444444 6666666 55555555556666666 666666
Q ss_pred CCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcC-CCCCeeecCCCccCHHHHHcccCCCccceeccccc
Q 011688 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 455 (479)
|.+.......+.. ++|++|++++|..+....+..+.++ ++|+.|++++|++..+++. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6666544434433 5667777776633555545556666 6777777777766654332 4556667766665
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.6e-19 Score=157.45 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=86.1
Q ss_pred CCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecC
Q 011688 253 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 332 (479)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 332 (479)
..+.++++++.+..... . -.++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~-~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-G--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCS-C--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCC-C--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34556665554432211 0 11355566666555554444445555555555555555554444444445555555555
Q ss_pred CCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHH
Q 011688 333 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 412 (479)
+|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCcc
Confidence 55554443334444455555555555554444444444455555555555554443334444455555555554 44443
Q ss_pred HHHHHhcCCCCCeeecCCCcc
Q 011688 413 TLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 413 ~~~~l~~~~~L~~L~l~~~~~ 433 (479)
.+..+..+++|+.|++++|++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 333444444555555554444
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=8.2e-20 Score=158.11 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=141.4
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCC-CCchhhHhhhCCCCCCEEeccC-CCCChHHHHHHhcCCCCCEE
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSRLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCL 281 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 281 (479)
+++++|+++++.+....+..+..+++|+.|++++|. +....+..|..+++|+.|++++ +.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999988766688899999999999997 8777767888999999999998 88877666678899999999
Q ss_pred eccCcccChhhhHhhcCCCCCC---EEEccCC-CCChHHHHHhhCCCCCc-EEecCCCCCCHHHHHHHhcCCCCCEEEcC
Q 011688 282 ELSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLF 356 (479)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (479)
++++|.+.... .+..+++|+ .|++++| .+.......+..+++|+ +|++++|.+...+...+.. ++|++|+++
T Consensus 111 ~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 99999886532 266777777 8888888 77665555566667777 7777766665443333333 556666666
Q ss_pred CCc-cchhHHHhhhcC-CCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 357 GAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 357 ~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+|+ ++..++..+..+ ++|+.|++++|.+...... .+++|+.|.++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 663 555545555555 6666666666665543222 3455666655554
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=8.2e-19 Score=152.89 Aligned_cols=180 Identities=20% Similarity=0.236 Sum_probs=134.9
Q ss_pred CCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEc
Q 011688 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
...+.++++++.+..... .+ .+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345677777776655332 22 257888888888776666556777888888888888877766666777888888888
Q ss_pred cCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCch
Q 011688 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
++|.+.......+..+++|++|++++|.+.......+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88887766666677788888888888887766655566778888888888888877666677788888888888888777
Q ss_pred hHHhhhhcCCCCEEEcCCCCCCCH
Q 011688 388 GVKHIKDLSSLTLLNLSQNCNLTD 411 (479)
Q Consensus 388 ~~~~l~~~~~L~~L~l~~~~~~~~ 411 (479)
.+..+..+++|++|++++| .+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N-~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGN-QFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSC-CBCT
T ss_pred CHHHHhCCCCCCEEEeeCC-ceeC
Confidence 6667777888888888888 4443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.1e-17 Score=146.92 Aligned_cols=173 Identities=25% Similarity=0.318 Sum_probs=123.8
Q ss_pred hCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcE
Q 011688 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 328 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 328 (479)
..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 34677888888888765442 36677888888888887765443 67788888888888877653 33677788888
Q ss_pred EecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCC
Q 011688 329 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 408 (479)
Q Consensus 329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 408 (479)
|++++|.+.+. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++| .
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-c
Confidence 88888777664 3456777888888888877765 456677788888888877776543 667778888888877 6
Q ss_pred CCHHHHHHHhcCCCCCeeecCCCccCHH
Q 011688 409 LTDKTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 409 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 436 (479)
+.... .+..+++|+.|++++|++...
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCCh--hhccCCCCCEEECcCCcccCC
Confidence 66532 366777788888877776553
No 96
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=3.8e-18 Score=155.04 Aligned_cols=286 Identities=14% Similarity=0.123 Sum_probs=168.7
Q ss_pred CCCCcEEeccCCCCCCccccccccC-CCCCcEEEcccCCCC--hHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhC----
Q 011688 154 LMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVT--DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---- 226 (479)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---- 226 (479)
++++++|.+++. +.......+.. +++|+.|+++++.+. .... +.++.+..+....+.+. ..+|..
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhcccccc
Confidence 356666666642 22222223333 566777777666655 1111 11111223333333221 234555
Q ss_pred ----CCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCccc----ChhhhHhhcC
Q 011688 227 ----LGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSG 298 (479)
Q Consensus 227 ----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~ 298 (479)
+++|+.+.+.. .+.......|..|++|+.|+++++.+.......|.++.++..+....... .......|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 67777777766 55555556666777777777776655544444555555555555443211 1111222344
Q ss_pred CCCCC-EEEccCCCC-ChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh-cCCCCCEEEcCCCccchhHHHhhhcCCCCc
Q 011688 299 LTNLE-SINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 299 ~~~L~-~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
+..|+ .+.+..... .......-....+++.+.+.+. +.......+. .|++|+.+++.+|+++.++...|.+|++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 55555 333332211 1111111112456667777654 3333333333 478888888888888888888888888888
Q ss_pred EEEecCCCCCchhHHhhhhcCCCC-EEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecc
Q 011688 376 SLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 452 (479)
Q Consensus 376 ~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 452 (479)
.+++.++ +...+..+|..|++|+ .+.+.+ .+..+.+.+|.+|++|+.++++++.+..++..+|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888876 7777777888888888 888887 477767778888888888888888888888888888888888764
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=3.3e-17 Score=145.69 Aligned_cols=167 Identities=29% Similarity=0.365 Sum_probs=127.9
Q ss_pred CCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEE
Q 011688 226 ALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (479)
.+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 456788888888877654 346678888888888887765544 77888888888888877553 347778888888
Q ss_pred EccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCC
Q 011688 306 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 385 (479)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 385 (479)
++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.++...+ +..+++|+.|++++|.+.
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 8888877754 4567788888888888887765 456778888888888888877654 777888888888888887
Q ss_pred chhHHhhhhcCCCCEEEcCCC
Q 011688 386 DAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 386 ~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+.. .+..+++|+.|++++|
T Consensus 192 ~l~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 192 DLR--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp BCG--GGTTCTTCSEEEEEEE
T ss_pred CCh--hhccCCCCCEEECcCC
Confidence 752 3677888888888887
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=4.8e-17 Score=135.94 Aligned_cols=153 Identities=21% Similarity=0.308 Sum_probs=108.5
Q ss_pred CCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEE
Q 011688 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (479)
+++|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456667777766665322 456677777777777755443 2456777888888888887776666677788888888
Q ss_pred ecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 379 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+++|.+.+..+..+..+++|++|++++|..+... + .+..+++|+.|++++|.+.+.. .+..+++|++|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 8888887766777778888888888888325553 2 4777888888888888887743 6677888888888888865
Q ss_pred H
Q 011688 459 A 459 (479)
Q Consensus 459 ~ 459 (479)
.
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 99
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2.4e-17 Score=149.72 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=57.7
Q ss_pred CCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc-EEEecCCCCCchhHHhhhhcCCCCEE
Q 011688 323 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLL 401 (479)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L 401 (479)
+++|+++++.+|.+...+..+|..|++|+.+.+.++ +..++...|.+|++|+ .+.+.+ .++.....+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555554455555556666665554 5455555555566665 666655 4555545555666666666
Q ss_pred EcCCCCCCCHHHHHHHhcCCCCCeee
Q 011688 402 NLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 402 ~l~~~~~~~~~~~~~l~~~~~L~~L~ 427 (479)
+++++ .+..+...+|.++++|+.++
T Consensus 303 ~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EeCCC-ccCccchhhhcCCcchhhhc
Confidence 66555 45555555566666666554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.1e-16 Score=153.94 Aligned_cols=186 Identities=25% Similarity=0.300 Sum_probs=141.3
Q ss_pred hhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCc
Q 011688 248 FSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 327 (479)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 327 (479)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 345678899999988776542 47788999999999988866544 77889999999999887753 3577788899
Q ss_pred EEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCC
Q 011688 328 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 407 (479)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 407 (479)
+|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N- 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN- 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-
Confidence 999988887764 3467788888888888888775 467788888888888888877654 777888888888888
Q ss_pred CCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccc
Q 011688 408 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 448 (479)
Q Consensus 408 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 448 (479)
.+... ..+..+++|+.|++++|++...+...+..+..+.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecc
Confidence 67664 3477788888888888887765444333333333
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.4e-16 Score=155.11 Aligned_cols=173 Identities=28% Similarity=0.362 Sum_probs=142.9
Q ss_pred hhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCC
Q 011688 224 LSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 303 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (479)
+..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 34567899999999887764 357789999999999998876554 78899999999999988653 3678899999
Q ss_pred EEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCC
Q 011688 304 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988763 4577899999999999988876 457789999999999999887755 7889999999999999
Q ss_pred CCchhHHhhhhcCCCCEEEcCCCCCCCH
Q 011688 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 411 (479)
Q Consensus 384 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (479)
+.+. ..+..+++|+.|+|++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 9875 35788899999999998 4443
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=3e-16 Score=131.13 Aligned_cols=149 Identities=22% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcC
Q 011688 277 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 356 (479)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (479)
+|+.|+++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3444444444433211 234444555555554433321 234445555555555555544333444555566666666
Q ss_pred CCccchhHHHhhhcCCCCcEEEecCCC-CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccC
Q 011688 357 GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
+|.++...+..+..+++|+.|++++|. +... + .+..+++|++|++++| .+.+.. .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcccC
Confidence 666555445555556666666666665 4443 2 3555666666666666 454422 4555666666666666543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=4.2e-17 Score=137.79 Aligned_cols=162 Identities=18% Similarity=0.171 Sum_probs=105.4
Q ss_pred CCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEc
Q 011688 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355 (479)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (479)
+++++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554444444555666666666666655444444556667777777776666554444566777777777
Q ss_pred CCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCH
Q 011688 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
++|.++...+..+..+++|+.|++++|.+.+.....+..+++|++|++++| .+. +.+++|+.|+++.|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCc
Confidence 777777666666677778888888888777665555677788888888887 333 346677788887777776
Q ss_pred HHHHcccCCC
Q 011688 436 AGLRHLKPLK 445 (479)
Q Consensus 436 ~~~~~l~~~~ 445 (479)
..|..+..++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665554443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-16 Score=134.04 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=124.8
Q ss_pred CCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEE
Q 011688 299 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 378 (479)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 378 (479)
.++|++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46799999999988876666677889999999999988876666677888999999999988877776778889999999
Q ss_pred ecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 379 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 379 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|++.. .++.|++|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 9999888776666788899999999998 7777666667788999999999987643 5677888888887666
Q ss_pred H
Q 011688 459 A 459 (479)
Q Consensus 459 ~ 459 (479)
.
T Consensus 179 g 179 (208)
T 2o6s_A 179 G 179 (208)
T ss_dssp T
T ss_pred c
Confidence 4
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1.3e-16 Score=135.50 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEe
Q 011688 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 379 (479)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 379 (479)
++++.|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.++..+...+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666665544445555666666666666655554455555566666666666665555444555566666666
Q ss_pred cCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 380 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 380 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666655555555555566666666665 45554444455555566666655554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=1.9e-16 Score=145.65 Aligned_cols=175 Identities=21% Similarity=0.224 Sum_probs=97.6
Q ss_pred CEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhc-CCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCC
Q 011688 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
+.++++++.+..... .-.+.++.|++++|.+.......+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~---~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS---SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc---cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666665543211 1123466677777666555554454 566666666666666655555555666666666666
Q ss_pred CCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhh---hhcCCCCEEEcCCCCCCC
Q 011688 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 410 (479)
|.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|+|++| .+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence 66655544445556666666666666655555555556666666666666555433333 34555666666655 455
Q ss_pred HHHHHHHhcCCC--CCeeecCCCcc
Q 011688 411 DKTLELISGLTG--LVSLNVSNSRI 433 (479)
Q Consensus 411 ~~~~~~l~~~~~--L~~L~l~~~~~ 433 (479)
...+..+..++. ++.|++++|++
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 544445555554 25555555544
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2.4e-16 Score=133.97 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=86.0
Q ss_pred CEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHH-HHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCC
Q 011688 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (479)
+.++++++.+.... ..+ .+.++.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666554321 111 2345666666666654422 2345566666666666666555444555566666666666
Q ss_pred CccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6666555555555666666666666665555555555666666666666 55554455555566666666666654
No 108
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.5e-16 Score=148.33 Aligned_cols=335 Identities=16% Similarity=0.162 Sum_probs=188.8
Q ss_pred CCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCcccccccc
Q 011688 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (479)
Q Consensus 69 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (479)
++.....+|..|.+|+.+.+.. .++.....+|..|.+|+.++++++ ++.....+|..+.+|+.+.+... ......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 4455556788888888888864 466666677788888888888654 34444556666777766665542 222222
Q ss_pred ccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCC
Q 011688 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (479)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 228 (479)
.+|..+..++...... .......++.++++|+.+.+..+ +.......|..+.+|+.+.+.
T Consensus 134 ~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~---------------- 193 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP---------------- 193 (394)
T ss_dssp TTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC----------------
T ss_pred eeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC----------------
Confidence 3344443332222211 22223344555556665555432 222223334444444444443
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
.+ +.......|..+..|+.+.+..+... .. .......+|+.+.+... ........+..+..++.+.+.
T Consensus 194 --------~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 194 --------RN-LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp --------TT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC
T ss_pred --------CC-ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEECCC-ceecccccccccccceeEEcC
Confidence 22 22222234445555555555443110 00 00122345555555432 122223345556666666665
Q ss_pred CCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchh
Q 011688 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
.+. .......+..++.++.+......+.+ ..+..+.+|+.+.+..+ +..++...|.+|++|+.+++.. .++..+
T Consensus 262 ~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~ 335 (394)
T 4fs7_A 262 NNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIG 335 (394)
T ss_dssp CTT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred CCc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEh
Confidence 442 22223344556666666665543222 34567788888887654 5556666778888888888864 366666
Q ss_pred HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCcccee
Q 011688 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 450 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 450 (479)
..+|..|.+|+.+.+..+ +..+...+|.+|++|+.+++..+ +... ..+|.+|++|+.+
T Consensus 336 ~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 778888889999988765 66666778888999999988754 3333 3578888888875
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.59 E-value=5e-16 Score=132.90 Aligned_cols=133 Identities=22% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEc
Q 011688 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 403 (479)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555544443344445555555555555555444444455555555555555555544444455555555555
Q ss_pred CCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccC
Q 011688 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
++| .+.. +|..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 120 s~N-~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCN-KLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSS-CCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCC-cccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555 4442 3444455556666666666555554444555556666666666554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=7.9e-16 Score=141.50 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=132.1
Q ss_pred cEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHh-cCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccC
Q 011688 231 FYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 309 (479)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (479)
+.++.+++.+.... ..+ .+.++.|++++|.+.......+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777665533 222 34588888888887766655565 788888888888888776667778888888888888
Q ss_pred CCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhh---hcCCCCcEEEecCCCCCc
Q 011688 310 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 386 (479)
|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.++..+...+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877666667788888888888888887766677788888888888888887766555 567888888888888887
Q ss_pred hhHHhhhhcCC--CCEEEcCCC
Q 011688 387 AGVKHIKDLSS--LTLLNLSQN 406 (479)
Q Consensus 387 ~~~~~l~~~~~--L~~L~l~~~ 406 (479)
.....+..++. ++.|++++|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 76667777776 478888888
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=5.4e-16 Score=135.58 Aligned_cols=169 Identities=23% Similarity=0.282 Sum_probs=120.2
Q ss_pred CCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEec
Q 011688 252 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 331 (479)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (479)
.++..++++++.+.+.. .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666666655433 3556788888888888775433 56778888888888887776544 777888888888
Q ss_pred CCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCH
Q 011688 332 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 411 (479)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 411 (479)
++|.+.+... +.. ++|++|++++|.++.. ..+..+++|+.|++++|.+++.. .+..+++|++|++++| .+.+
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCB
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcc
Confidence 8887766432 223 7788888888877765 24677788888888888877652 5677788888888887 6666
Q ss_pred HHHHHHhcCCCCCeeecCCCccCHH
Q 011688 412 KTLELISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 412 ~~~~~l~~~~~L~~L~l~~~~~~~~ 436 (479)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5566778888888888876654
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=3.6e-16 Score=143.21 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=110.5
Q ss_pred CCCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcE
Q 011688 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (479)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (479)
.++++.|++++|+++......|.++++|++|+|++|..........|..+++++++...++..+....+..|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 35677888888777766666677788888888877533333334456677776654433322245555666777777777
Q ss_pred EEccCccccccccccccCCCCCcEEeccCCCCCCccccccccCCC-CCcEEEcccCCCChHHHHHhhcCCCCCEEEecC-
Q 011688 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG- 213 (479)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 213 (479)
|++++|.........+....++..+++.++..+.......+..+. .++.|++++|.++......+ ...+|+.+++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 777776544333344445556667777665555555544555443 46667777776664433322 234566666654
Q ss_pred CCCCHHHHHHhhCCCCCcEEEccCCCCCchh
Q 011688 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244 (479)
Q Consensus 214 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 244 (479)
+.+....+..|..+++|+.|++++|.+....
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 3343333344556666666666666655443
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=6.2e-16 Score=131.38 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=114.9
Q ss_pred CEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCC
Q 011688 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (479)
+.++++++.++.... . -.++++.|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~-~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-N--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-S--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-c--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666665543221 1 1257888888888887666667778888888888888887776777788888888888888
Q ss_pred CCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 887766666677888888888888888877777788888888888888888776667777888888888888
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=4.1e-16 Score=145.28 Aligned_cols=334 Identities=15% Similarity=0.174 Sum_probs=209.0
Q ss_pred ChhHHHHhhCCCCCcEEEcCCCCcccHHHHHHHhCCCCCcEEEccCccccccccccccCCCCCcEEeccCCCCCCccccc
Q 011688 95 SDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174 (479)
Q Consensus 95 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (479)
+.++..+|..|.+|+.+.++.. ++.....+|.+|++|+.+++..+ ........|..+.+|+.+.+.. .+......
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIGVE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeecce
Confidence 3344455666666777766543 33444455556666666665442 1122223444455554444332 12222222
Q ss_pred cccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCC
Q 011688 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNL 254 (479)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 254 (479)
++.++ ..+........ ......+|..+.+|+.+.+..+ ........|..+.+|
T Consensus 135 aF~~~------------------------~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L 187 (394)
T 4fs7_A 135 AFKGC------------------------DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKL 187 (394)
T ss_dssp TTTTC------------------------CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecc------------------------cccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCc
Confidence 33332 22211111111 1111235666777777777543 233444678889999
Q ss_pred CEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCC
Q 011688 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 334 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (479)
+.+.+..+ +.......|.++..|+.+.+..+... .. .....+.+|+.+.+... +.......+..+..++.+.+..+
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 99999765 44344455778889998888764321 11 22334578888888643 33334445677899999999765
Q ss_pred CCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHH
Q 011688 335 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 414 (479)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 414 (479)
. .......+..+..++.+......+. ...+..+.+|+.+.+.++ +...+..+|..|.+|+.+++.++ +..+..
T Consensus 264 ~-~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~ 336 (394)
T 4fs7_A 264 K-LRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK 336 (394)
T ss_dssp T-CEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT
T ss_pred c-ceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH
Confidence 3 2333355678889998887765433 345678899999999764 66666778999999999999864 777778
Q ss_pred HHHhcCCCCCeeecCCCccCHHHHHcccCCCccceecccccccCHHHHHHHHhccCCCcccc
Q 011688 415 ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 476 (479)
Q Consensus 415 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~l~~l 476 (479)
.+|.+|++|+.+++..+ +..++..+|..|++|+.+++..+ ++.... .+ .+|++|+.+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~-~F--~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRY-DF--EDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGG-GB--CTTCEEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhh-ee--cCCCCCcEE
Confidence 88999999999999876 78888899999999999999765 222111 22 367777765
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=128.25 Aligned_cols=149 Identities=20% Similarity=0.208 Sum_probs=112.0
Q ss_pred CEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhh-HhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCC
Q 011688 255 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 333 (479)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (479)
+.++++++.++.... .-.+.++.|++++|.+....+ ..+..+++|+.|++++|.++......+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~---~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc---CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777776654221 113457788888887765532 3467788888888888888776666777788888888888
Q ss_pred CCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 334 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 8887776666777888888888888888777777777888888888888888776777777888888888888
No 116
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=130.83 Aligned_cols=185 Identities=22% Similarity=0.286 Sum_probs=138.3
Q ss_pred CCCCCEEeccCcccChhhhHhhc-----CCCCCCEEEccCCCCChHHHHHhh-CCCCCcEEecCCCCCCHHHHHHHh---
Q 011688 275 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 345 (479)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~--- 345 (479)
.+.|+.+++++|.++......+. ..++|+.|++++|.+++.....+. .+++|++|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999998776655442 337999999999999877665554 367899999999999887665553
Q ss_pred --cCCCCCEEEcCCCccchhHHHh----hhcCCCCcEEEecCCCCCchhH----HhhhhcCCCCEEEcCCCCCCCHHHH-
Q 011688 346 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL- 414 (479)
Q Consensus 346 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~- 414 (479)
..++|++|++++|.++..+... +..+++|++|++++|.+.+.+. ..+...++|++|+|++| .+.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4688999999999988655433 3678899999999999887653 34566789999999999 8887644
Q ss_pred ---HHHhcCCCCCeeecCCCccCHHHHHcccCC---C--ccceec--ccccccCHH
Q 011688 415 ---ELISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 460 (479)
Q Consensus 415 ---~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~L~--l~~~~~~~~ 460 (479)
..+..+++|++|++++|.+...+...+... . .|+.+. +.++.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 344567999999999999998777655332 2 277777 777777654
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.9e-16 Score=145.04 Aligned_cols=203 Identities=19% Similarity=0.150 Sum_probs=114.9
Q ss_pred cEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHH-HHHHhhCCCCCcE-EEc
Q 011688 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFY-LNL 235 (479)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~-L~l 235 (479)
++++.++ +.++..+ ..+ .+++++|++++|.++......|..+++|++|++++|.+... .+..|..++++.. +.+
T Consensus 12 ~~v~C~~-~~Lt~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455554 3344332 222 25788899988888876666788888888888888876443 2345667777665 444
Q ss_pred cCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccC-cccChhhhHhhcCC-CCCCEEEccCCCCC
Q 011688 236 NRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGL-TNLESINLSFTGIS 313 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 313 (479)
..+.+....+..|..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+ ..++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55677666666777778888888877766543333333444555666644 23333223333333 24555666666555
Q ss_pred hHHHHHhhCCCCCcEEecCC-CCCCHHHHHHHhcCCCCCEEEcCCCccchhHH
Q 011688 314 DGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGA 365 (479)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 365 (479)
......+ ..++|+++.+.+ +.+.......|..+++|++|++++|+++..+.
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 4322222 234555555543 33444333444555555555555555554433
No 118
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=6e-14 Score=128.61 Aligned_cols=185 Identities=23% Similarity=0.364 Sum_probs=141.2
Q ss_pred CCCCCEEeccCCCCChHHHHHHhcC-----CCCCEEeccCcccChhhhHhh-cCCCCCCEEEccCCCCChHHHHHhh---
Q 011688 251 LTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA--- 321 (479)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~--- 321 (479)
.+.|+.|++++|.++......+... ++|+.|++++|.++......+ ..+++|+.|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999987766655433 699999999999877665544 3467899999999999887666653
Q ss_pred --CCCCCcEEecCCCCCCHHHHHHH----hcCCCCCEEEcCCCccchhH----HHhhhcCCCCcEEEecCCCCCchhHHh
Q 011688 322 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 391 (479)
Q Consensus 322 --~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 391 (479)
..++|++|++++|.+++.+...+ ..+++|++|++++|.++..+ ...+..+++|+.|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46899999999999987654443 57899999999999998765 344567889999999999998765544
Q ss_pred ----hhhcCCCCEEEcCCCCCCCHHHHHHHhcCCC-----CCeee--cCCCccCHH
Q 011688 392 ----IKDLSSLTLLNLSQNCNLTDKTLELISGLTG-----LVSLN--VSNSRITSA 436 (479)
Q Consensus 392 ----l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-----L~~L~--l~~~~~~~~ 436 (479)
+...++|++|+|++| .+.+.....+..+.. |+.+. +..+.+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 345699999999999 899888877765422 66666 666665543
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=5.4e-15 Score=142.35 Aligned_cols=188 Identities=19% Similarity=0.120 Sum_probs=120.8
Q ss_pred CCCCEEEecCCCCCHHHHHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEec
Q 011688 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 283 (479)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 283 (479)
.+++.|+++++.+... |..+ .++|+.|++++|.+.... ..+++|+.|++++|.++.... +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 3788888888877652 3333 367888888888776432 346778888888877665222 322 7888888
Q ss_pred cCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchh
Q 011688 284 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 363 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 363 (479)
++|.++.... .+++|+.|++++|.++.... .+++|++|++++|.+...+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 8877765222 46777888887777664222 45677777777777666432 33 6777777777777654
Q ss_pred HHHhhhcCCCC-------cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcC
Q 011688 364 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 420 (479)
Q Consensus 364 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 420 (479)
+. +.. +| +.|++++|.++.. +..+..+++|+.|++++| .+....|..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHh
Confidence 33 322 45 7777777777654 444455777777777777 6777666666553
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=6.8e-15 Score=136.20 Aligned_cols=130 Identities=11% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCC-----HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 300 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-----DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
.+|+.+.+. +.+.......|..+++|+.+.+.++... .....+|..|++|+.+.+.. .+..++...|.+|++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 344444442 2233333334444555555555443322 23334556666777777663 3555556666677777
Q ss_pred cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCC-CCCeeecCCCccC
Q 011688 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSRIT 434 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 434 (479)
+.+.+..+ +......+|..+ +|+.+.+.+| .........|.+++ +++.|++..+.+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence 77777443 555555666666 7777777776 44443444455553 5677777665543
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=4.6e-15 Score=126.89 Aligned_cols=130 Identities=23% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCCCEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEc
Q 011688 276 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 355 (479)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (479)
++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|++++|.+.......+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45556666555555444444555555555555555554433333444455555555555444433333344444455555
Q ss_pred CCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 356 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
++|.+... +..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 44444432 222344444444444444444433333444444444444444
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=4.1e-15 Score=143.17 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=139.7
Q ss_pred CCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEc
Q 011688 228 GSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 307 (479)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (479)
.+++.|+++++.+... +..+ .++|+.|++++|.+.... ..+++|+.|++++|.++.. +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 4899999999988763 3323 378999999999877433 4578999999999988763 22 433 8999999
Q ss_pred cCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCch
Q 011688 308 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 387 (479)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 387 (479)
++|.++.... .+++|++|++++|.+...+. .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 9998776322 57889999999988876432 56789999999998887544 43 7899999999988754
Q ss_pred hHHhhhhcCCC-------CEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccC
Q 011688 388 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 443 (479)
Q Consensus 388 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 443 (479)
.. +.. +| +.|++++| .+.. +|..+..+++|+.|++++|+++...+..+..
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 332 66 88999988 7775 5666667888999999999888877766544
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2e-15 Score=132.04 Aligned_cols=163 Identities=22% Similarity=0.322 Sum_probs=120.9
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
++..+++.++.+.... .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3445556666655432 3556788888888888776543 46778888888888888766544 7788888888888
Q ss_pred CCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchh
Q 011688 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
+|.+.... .+.. ++|++|++++|.+.+.. .+..+++|+.|++++|.++... .+..+++|+.|++++|.+.+.
T Consensus 94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCT--TCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcC--cccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 88776532 2233 78888888888877653 4677888888888888887763 567788888888888888775
Q ss_pred HHhhhhcCCCCEEEcCCC
Q 011688 389 VKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~ 406 (479)
..+..+++|+.|++++|
T Consensus 166 -~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -TTSTTCCCCCEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCC
Confidence 55777888888888888
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=2.3e-15 Score=139.31 Aligned_cols=218 Identities=13% Similarity=0.150 Sum_probs=156.3
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
+|+.+.+.. .+.......|..|++|+.+++.++.+.......|. +.+|+.+.+..+ +.......|.+|++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555543 33333344556666666666665555444333444 466777777633 444555667778888888887
Q ss_pred CCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccc-----hhHHHhhhcCCCCcEEEecCCC
Q 011688 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGG 383 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~ 383 (479)
.+ +.......|.. .+|+.+.+.. .+......+|..|++|+.+.+.++... .++...|.+|++|+.+.+.+ .
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 54 44444445555 7899999954 466666678889999999999887654 46677889999999999984 5
Q ss_pred CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCC-ccceecccccc
Q 011688 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK 456 (479)
Q Consensus 384 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 456 (479)
+...+...|..|.+|+.+.|..+ +..+...+|.++ +|+.+++.+|.........|..++ .++.|++-.+.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 77777888999999999999775 777777888899 999999999987777667777774 78889888765
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.3e-14 Score=115.23 Aligned_cols=65 Identities=29% Similarity=0.395 Sum_probs=25.1
Q ss_pred cCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHH-HHHHHhcCCCCCeeecCCCccCH
Q 011688 370 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 435 (479)
.+++|+.|++++|.+.+..+..+..+++|++|++++| .+... .+..+..+++|++|++++|++..
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 3344444444444443322333333444444444444 33332 12333334444444444444433
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=6.1e-15 Score=119.77 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=82.2
Q ss_pred CCCcEEecCCCCCC-HHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEE
Q 011688 324 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 402 (479)
Q Consensus 324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 402 (479)
++|++|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555544 11122234556666666666666654 4456667777777777777664455555677777777
Q ss_pred cCCCCCCCHHH-HHHHhcCCCCCeeecCCCccCHHHH---HcccCCCccceecccccccC
Q 011688 403 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 403 l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 458 (479)
+++| .+.... +..+..+++|+.|++++|++...++ ..+..+++|+.|++++|++.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777 565532 2556667777777777777766544 45667777777777777654
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=3.3e-16 Score=151.70 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=80.4
Q ss_pred CCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeec
Q 011688 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 428 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 428 (479)
.|+.|++++|.++..+ . ++.+++|+.|++++|.+... |..+..+++|+.|+|++| .++. +| .+.++++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCC-Cc-ccCCCCCCcEEEC
Confidence 4677777777776643 2 66677777777777777643 456677777777777777 5665 33 5667777777777
Q ss_pred CCCccCHHH-HHcccCCCccceecccccccCHHH--HHHHHhccCCCccccC
Q 011688 429 SNSRITSAG-LRHLKPLKNLRSLTLESCKVTAND--IKRLQSRDLPNLVSFR 477 (479)
Q Consensus 429 ~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~~l~~l~ 477 (479)
++|.+.... |..+..+++|+.|++++|+++... ...+. ..+|+|+.|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-EMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-HHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-HHCcccCccC
Confidence 777777765 666777777777777777765431 11221 3467776654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=9.4e-14 Score=110.24 Aligned_cols=109 Identities=24% Similarity=0.320 Sum_probs=49.0
Q ss_pred CCCCEEeccCcccC-hhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEE
Q 011688 276 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 354 (479)
Q Consensus 276 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 354 (479)
++++.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555543 22233334455555555555544433 3334444555555554444442233333344444444
Q ss_pred cCCCccchhH-HHhhhcCCCCcEEEecCCCCCc
Q 011688 355 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 355 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
+++|.++... +..+..+++|+.|++++|.+.+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 4444444421 2333444444444444444433
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=4.7e-16 Score=150.57 Aligned_cols=196 Identities=19% Similarity=0.187 Sum_probs=152.0
Q ss_pred hCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcc-------------cChhhhHhhcCCCCCCEEE-ccCCCCCh
Q 011688 249 SRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------VGSSGLRHLSGLTNLESIN-LSFTGISD 314 (479)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 314 (479)
..+++|+.|+++++.+. ..+..++.+++|+.|+++++. .....+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45789999999998774 567778899999999987654 2334445666778888887 45443222
Q ss_pred HH--------HHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCc
Q 011688 315 GS--------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 386 (479)
Q Consensus 315 ~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 386 (479)
.. ...+. ...|+.|++++|.+...+ . ++.+++|+.|++++|.++.. |..++.+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccC-ccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC
Confidence 11 11111 247999999999988754 3 78899999999999999955 5578899999999999999988
Q ss_pred hhHHhhhhcCCCCEEEcCCCCCCCHHH-HHHHhcCCCCCeeecCCCccCHHHH---HcccCCCccceecc
Q 011688 387 AGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 452 (479)
Q Consensus 387 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l 452 (479)
. + .+..+++|++|++++| .+.... |..+..+++|+.|++++|++...++ ..+..+|+|+.|++
T Consensus 501 l-p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 V-D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 4 7889999999999999 888865 8889999999999999999987644 22334788888753
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.3e-14 Score=116.32 Aligned_cols=111 Identities=23% Similarity=0.256 Sum_probs=61.8
Q ss_pred CCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhH-HhhhhcCCCCE
Q 011688 322 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTL 400 (479)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~ 400 (479)
.+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+... ..+..+++|++
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 334444444444444333 233445556666666665555434444556666666666666655422 45556666777
Q ss_pred EEcCCCCCCCHHHH---HHHhcCCCCCeeecCCCccCH
Q 011688 401 LNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 435 (479)
Q Consensus 401 L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~ 435 (479)
|++++| .+....+ ..+..+++|+.|++++|.+..
T Consensus 125 L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 125 LDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 777666 4444333 456667777777777776544
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=6.2e-14 Score=114.64 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred CCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHH-HHHhcCCCCCeee
Q 011688 349 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN 427 (479)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~ 427 (479)
+|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+..... ..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence 555566655555543 34455666666666666666544344455666666666666 4544221 2455666666666
Q ss_pred cCCCccCHHHHH---cccCCCccceecccccccCH
Q 011688 428 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 428 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~ 459 (479)
+++|++...+.. .+..+++|+.|++++|+..+
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666666543322 35566677777777766544
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=4.9e-14 Score=116.87 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=75.5
Q ss_pred CEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHH-HHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecC
Q 011688 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
+.++++++.++... ..+ .+++++|++++|.+...... .+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666554321 111 23666666666666554432 245566666666666666665555566666666666666
Q ss_pred CCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccC
Q 011688 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
|.+.+..+..+..+++|++|++++| .+....+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666655555556666666666666 555555555556666666666666554
No 133
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=2.6e-13 Score=126.32 Aligned_cols=128 Identities=18% Similarity=0.251 Sum_probs=67.8
Q ss_pred hhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCC
Q 011688 320 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 399 (479)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 399 (479)
|..++.|+.+.+... +......++..|+.|+.+.+. ..+..++...|.+|.+|+.+.+.++ ++..+..+|..|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 344455555555432 122223345556666666664 3344444556666677777776542 4445555666677777
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCccCHHHHHcccCCCccceeccccc
Q 011688 400 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 455 (479)
Q Consensus 400 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 455 (479)
.+.+..+ +..+...+|.+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 7777553 55555566677777777777665321 245556667777766554
No 134
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=1.7e-12 Score=120.89 Aligned_cols=333 Identities=14% Similarity=0.124 Sum_probs=162.5
Q ss_pred chhhcccCCC-CCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCC--CcccHHHHHHHhCCCCCcEEEccCcccccccc
Q 011688 72 SGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--NAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (479)
Q Consensus 72 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (479)
....+|.+|. .|+.+.+.. .++.++..+|..|.+|+.+.+..+ ..++.....+|..|.+|+.+.+... ......
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 3344566663 466666654 355555666666666766666543 1123333445555566655555431 222223
Q ss_pred ccccCCCCCcEEeccCCCCCCccccccccCCCCCcEEEcccCCCChHHHHHhhcCCCCCEEEecCCCCCHHHHHHhhCCC
Q 011688 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (479)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 228 (479)
..|..+.+|+.+.+.. .+.......+..+..|+.+.+..+ +......+|.. ..|+.+.+.... ......++..+.
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcc
Confidence 3455556666666542 233334445555666666655432 22222223322 345555554321 111122334444
Q ss_pred CCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCCCCCEEEcc
Q 011688 229 SLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 308 (479)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (479)
++.................+..........+. +.....+..+.+.. .+.......|.+|..|+.+.+.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIR-----------YPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEE-----------CCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECC
T ss_pred ccceecccccccccccceeecccccccccccc-----------cccccccceEEcCC-cceEcccceeeecccccEEecc
Confidence 44444433222111000000000000000000 01112233333322 1222233455666777777665
Q ss_pred CCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchh
Q 011688 309 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 388 (479)
... .......+.+++.|+.+.+.. .+...+..+|..|.+|+.+.+..+ ++.++...|.+|.+|+.+.+..+ ++..+
T Consensus 274 ~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 274 DSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred ccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 432 223344455677777777753 344444566777888888888654 55566677888888888888643 66666
Q ss_pred HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCc
Q 011688 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 432 (479)
..+|.+|.+|+.+.+.++ . .....+..+.+|+.+.+..+.
T Consensus 350 ~~aF~~C~~L~~i~~~~~-~---~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGS-R---SQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp GGGGTTCTTCCEEEESSC-H---HHHHTCBCCCCC---------
T ss_pred HhHhhCCCCCCEEEECCc-e---eehhhhhccCCCCEEEeCCCC
Confidence 777888888888888876 1 122445667788888776553
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=3e-13 Score=110.76 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred CCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeee
Q 011688 348 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 427 (479)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 427 (479)
++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 34444444444444433333444455555555555544443333444455555555555 44443333344455555555
Q ss_pred cCCCccCHHHHHcccCCCccceecccccccC
Q 011688 428 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT 458 (479)
Q Consensus 428 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 458 (479)
+++|.+...++..+..+++|++|++++|+++
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555555444434444555555555555443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=113.10 Aligned_cols=126 Identities=22% Similarity=0.243 Sum_probs=69.2
Q ss_pred CEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCC
Q 011688 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (479)
+.++++++.++... .. -.++|++|++++|.+.... ..+..+++|+.|++++|.++...+..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34566555544321 11 1245666666666655433 34555566666666666665555555555666666666666
Q ss_pred CCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 383 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 383 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 665555555555566666666665 45544444455555666666655544
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=3.6e-13 Score=110.05 Aligned_cols=135 Identities=19% Similarity=0.251 Sum_probs=90.6
Q ss_pred cCCCCCCEEEccCCCCChHHHHHhhC-CCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCc
Q 011688 297 SGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 375 (479)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 375 (479)
..+++|+.|++++|.+... ..+.. .++|++|++++|.+.+. ..+..+++|++|++++|.++..++..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456666666666665532 22333 33777777777776654 3456677888888888877766555557778888
Q ss_pred EEEecCCCCCchhH-HhhhhcCCCCEEEcCCCCCCCHHHHH---HHhcCCCCCeeecCCCccCHH
Q 011688 376 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 376 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~ 436 (479)
.|++++|.+..... ..+..+++|++|++++| .+...... .+..+++|+.|++++|.....
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 88888888766432 35677888888888888 55543222 477788888888888876553
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=9.7e-15 Score=121.98 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=96.3
Q ss_pred HhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCC
Q 011688 319 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 398 (479)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 398 (479)
.+..+++|++|++++|.+.... .+..+++|++|++++|.++.. +..+..+++|+.|++++|.+.+.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5566677777777777665533 556677888888888877754 334555678888888888887742 57778888
Q ss_pred CEEEcCCCCCCCHHHH-HHHhcCCCCCeeecCCCccCHHHHH----------cccCCCccceecccccccCH
Q 011688 399 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 399 ~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~~~~ 459 (479)
++|++++| .+..... ..+..+++|++|++++|++....+. .+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999888 6766433 5677888899999998888665432 366788888886 666654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3.6e-13 Score=111.65 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=99.9
Q ss_pred CEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHH-HhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCC
Q 011688 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 357 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (479)
+.++++++.+.... ..+ .++++.|++++|.+...... .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888887764332 222 24788899988887765443 367788999999999888877667778888899999999
Q ss_pred CccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCC
Q 011688 358 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (479)
|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++| .+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 9888877777788889999999999888877777888889999999988 444
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=5.3e-14 Score=117.50 Aligned_cols=129 Identities=26% Similarity=0.278 Sum_probs=105.7
Q ss_pred HHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCC
Q 011688 343 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422 (479)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 422 (479)
.+..+++|++|++++|.+...+ .+..+++|+.|++++|.+... +..+..+++|++|++++| .+... + .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcC-C-ccccCCC
Confidence 6778999999999999988854 778899999999999998854 455667799999999999 78773 3 6788999
Q ss_pred CCeeecCCCccCHHHH-HcccCCCccceecccccccCHH--------HHHHHHhccCCCccccC
Q 011688 423 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAN--------DIKRLQSRDLPNLVSFR 477 (479)
Q Consensus 423 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--------~~~~l~~~~~~~l~~l~ 477 (479)
|+.|++++|.+...+. ..+..+++|++|++++|+++.. .........+|+|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999998654 6788999999999999988654 12222235788888775
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.5e-12 Score=106.46 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEc
Q 011688 324 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL 403 (479)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 403 (479)
++|++|++++|.+.......+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34444444444444333333344445555555555554444444444555555555555555444444444555555555
Q ss_pred CCCCCCCHHHHHHHhcCCCCCeeecCCCccC
Q 011688 404 SQNCNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
++| .+....+..+..+++|+.|++++|++.
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 555 444433333444555555555555544
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=106.19 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=91.5
Q ss_pred CEEeccCcccChhhhHhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCC
Q 011688 279 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 358 (479)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (479)
+.++.+++.+.... ..+ .++|+.|++++|.+.... ..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677776664322 111 357888888888776433 56777888888888888887766666777888888888888
Q ss_pred ccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 359 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 888777777777888888888888887766666777788888888887
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=5.8e-13 Score=133.20 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=35.1
Q ss_pred CCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEE
Q 011688 298 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 377 (479)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 377 (479)
.+++|+.|++++|.++ ..+..+..+++|++|+|++|.+... +..+..+++|++|++++|.++.+ +..+..+++|+.|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L 321 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFL 321 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEE
Confidence 3444444444444443 1223333444444444444444322 22333444444444444444332 1223444444444
Q ss_pred EecCCCCCch
Q 011688 378 EICGGGLTDA 387 (479)
Q Consensus 378 ~l~~~~~~~~ 387 (479)
++++|.+.+.
T Consensus 322 ~L~~N~l~~~ 331 (727)
T 4b8c_D 322 GVEGNPLEKQ 331 (727)
T ss_dssp ECTTSCCCSH
T ss_pred eCCCCccCCC
Confidence 4444444433
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=9.4e-13 Score=131.68 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=67.4
Q ss_pred HHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHhcCCCCCEEeccCcccChhhhHhhcCCC
Q 011688 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 300 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 300 (479)
+..+..++.|+.|++++|.+.... ..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 445556666666666666665332 23335666666666666655 23344566666666666666665 3344556666
Q ss_pred CCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHH
Q 011688 301 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 344 (479)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (479)
+|+.|++++|.+... +..+..+++|++|++++|.+....+..+
T Consensus 294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666666666665532 3335666666666666666665444433
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1.2e-11 Score=100.00 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=49.6
Q ss_pred cEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
++++++++.+...+. . -.++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~-~--~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-G--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCc-c--CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555554443221 1 1244555555555555544444445555555555555555444444444555555555555
Q ss_pred CCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 407 CNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 407 ~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
.+....+..+..+++|+.|++++|++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 44443333444455555555555544
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=2.5e-11 Score=112.49 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=45.6
Q ss_pred HhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCC
Q 011688 344 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 423 (479)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 423 (479)
+..+.+|+.+.+... +...+...+.+|++|+.+.+.++.++..+...|..|.+|+.+.|..+ +..+...+|.+|++|
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCC
Confidence 334444444444322 23333334445555555555544444444445555555555555432 444444455555555
Q ss_pred CeeecCCCccCHHHHHcccCC
Q 011688 424 VSLNVSNSRITSAGLRHLKPL 444 (479)
Q Consensus 424 ~~L~l~~~~~~~~~~~~l~~~ 444 (479)
+.+.+..+ ++.++..+|.++
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEECCc-cCEEchhHhhCC
Confidence 55555432 444444445444
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.15 E-value=7.4e-11 Score=93.61 Aligned_cols=102 Identities=20% Similarity=0.408 Sum_probs=83.1
Q ss_pred CCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcC----CCCCeeecCCC-ccCHHHHHcccCCCc
Q 011688 372 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNS-RITSAGLRHLKPLKN 446 (479)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~-~~~~~~~~~l~~~~~ 446 (479)
..|+.|++++|.+++.+...+..+++|++|+|++|..+++.....+..+ ++|++|++++| ++++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688899998888888888888889999999999978888888888764 47999999998 588888888888999
Q ss_pred cceeccccc-ccCHHH--HHHHHhccCCCcc
Q 011688 447 LRSLTLESC-KVTAND--IKRLQSRDLPNLV 474 (479)
Q Consensus 447 L~~L~l~~~-~~~~~~--~~~l~~~~~~~l~ 474 (479)
|+.|++++| .+++.+ ...++ ..+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 999999999 477765 34444 6778765
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=1.1e-10 Score=108.10 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=71.5
Q ss_pred hhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCC
Q 011688 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 374 (479)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 374 (479)
.+..+..|+.+.+..+ ++......+..+.+|+.+.+... +......+|..|.+|+.+.+.++.++.++...|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555555555432 23333334445555666655432 333333455667777777777666666666677777777
Q ss_pred cEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCC
Q 011688 375 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 421 (479)
Q Consensus 375 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 421 (479)
+.+.+..+ ++..+..+|.+|.+|+.+.+..+ +..+...+|.+++
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 77777543 55555667777777887777654 5555555666554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.14 E-value=1.2e-10 Score=92.44 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCeeEEEeeCCCCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCC----CCCcEEEcCCCCcccHHHHHHHhCCCC
Q 011688 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (479)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (479)
-.|+.|+++++.+++.....+..|++|+.|+|++|..+++.+...++.+ ++|++|++++|..+++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3589999999888888888888999999999999988999888888874 579999999998888888888888888
Q ss_pred CcEEEccCcccccc
Q 011688 133 LVKLDLERCTRIHG 146 (479)
Q Consensus 133 L~~L~l~~~~~~~~ 146 (479)
|++|++++|..+..
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888875554
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.3e-11 Score=98.77 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred cEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 327 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+.++++++.+...+. .+ .++|++|++++|.+....+..+..+++|+.|++++|.+.+.....+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455555555543321 11 245566666666655555555555556666666666555544444455555666666555
Q ss_pred CCCCHHHHHHHhcCCCCCeeecCCCccC
Q 011688 407 CNLTDKTLELISGLTGLVSLNVSNSRIT 434 (479)
Q Consensus 407 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 434 (479)
.+....+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 455443334555555555555555544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=6.9e-10 Score=100.69 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=81.4
Q ss_pred hhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh--cCCCCCEEEcCCC--cc-chh----HH
Q 011688 295 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGA--RI-TDS----GA 365 (479)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~----~~ 365 (479)
.+..+|+|+.|.++++.-... ..+ ..++|++|.+..+.+.......+. .+|+|++|+|+.+ .. ... ..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345566666666665521110 011 256677777766666665544443 5667777766421 10 000 00
Q ss_pred Hhh--hcCCCCcEEEecCCCCCchhHHhhh---hcCCCCEEEcCCCCCCCHHHHHHH----hcCCCCCeeecCCCccCHH
Q 011688 366 AYL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNLTDKTLELI----SGLTGLVSLNVSNSRITSA 436 (479)
Q Consensus 366 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~ 436 (479)
..+ ..+|+|+.|.+.+|.+.+.....+. .+++|++|+|+.| .+.+.....+ ..+++|+.|++++|.+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 111 2356777777776666544333332 3566777777666 5666543333 3356677777777766665
Q ss_pred HHHcccC-CCccceecccccc
Q 011688 437 GLRHLKP-LKNLRSLTLESCK 456 (479)
Q Consensus 437 ~~~~l~~-~~~L~~L~l~~~~ 456 (479)
+...+.. + ..+++++.++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 5544432 2 2345565554
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=6.6e-11 Score=95.71 Aligned_cols=102 Identities=24% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecC
Q 011688 302 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
.+.++++++.++... ..+ .++|++|++++|.+....+..+..+++|++|++++|+++...+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666655422 111 36677777777777666555566677777777777777766666666677777777777
Q ss_pred CCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 382 GGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
|.+....+..+..+++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 7776665555666777777777777
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.2e-10 Score=94.43 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=69.2
Q ss_pred CEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecCC
Q 011688 303 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 382 (479)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 382 (479)
+.++++++.+.... ..+ .++|++|++++|.+....+..+..+++|++|++++|+++..++..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677766654322 112 367777777777777665566667777777777777777766656667777777777777
Q ss_pred CCCchhHHhhhhcCCCCEEEcCCC
Q 011688 383 GLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 383 ~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
.+....+..+..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 777665555667777777777777
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.2e-08 Score=92.62 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=82.2
Q ss_pred HHHhhCCCCCcEEEccCCCCCchhhHhhhCCCCCCEEeccCCCCChHHHHHHh--cCCCCCEEeccCc--cc-Chhhh--
Q 011688 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSRLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--QV-GSSGL-- 293 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~-~~~~~-- 293 (479)
...+..+|+|+.|.++++...... . + ..++|+.|++..+.+.......+. .+|+|+.|++..+ .. .....
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLSIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCBCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCceec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345566777777777665211111 1 2 267788888877777666555554 5777777776421 11 00000
Q ss_pred --HhhcCCCCCCEEEccCCCCChHHHHHhhCCCCCcEEecCCCCCCHHHHHHHh---cCCCCCEEEcCCCccchhHHHh-
Q 011688 294 --RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAY- 367 (479)
Q Consensus 294 --~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~- 367 (479)
..+. ...+|+|++|.+.+|.+.+.....+. .+++|++|+++.|.++..+...
T Consensus 242 l~~~l~----------------------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 242 FRPLFS----------------------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp TGGGSC----------------------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred HHHHHh----------------------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 0111 01245555555555544433222222 3455666666666555543222
Q ss_pred ---hhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 368 ---LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 368 ---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
+..+++|+.|+++.|.+++.....+...- ...++++++
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred HhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence 23456677777776666665555554311 345666665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=9.8e-09 Score=84.02 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=58.1
Q ss_pred HHhhCCCCCcEEecCCC-CCCHHHHHHH----hcCCCCCEEEcCCCccchhHHHh----hhcCCCCcEEEecCCCCCchh
Q 011688 318 RKLAGLSSLKSLNLDAR-QITDTGLAAL----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAG 388 (479)
Q Consensus 318 ~~l~~~~~L~~L~l~~~-~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~ 388 (479)
..+...+.|++|++++| .+.+.+...+ ...+.|++|++++|.+...+... +...++|++|++++|.+.+.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34445666666666666 6665443322 23455555555555554433222 233344555555555444433
Q ss_pred HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeec--CCCccCHHHH----HcccCCCccceecccccccCHHH
Q 011688 389 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND 461 (479)
Q Consensus 389 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l--~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~ 461 (479)
...+ ...+...++|++|++ ++|.+...+. ..+...++|++|++++|.+...+
T Consensus 110 ~~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 ILAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 2211 122233445555555 4455544332 22334455666666666555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=4.7e-08 Score=79.94 Aligned_cols=115 Identities=21% Similarity=0.163 Sum_probs=84.5
Q ss_pred hhHhhcCCCCCCEEEccCC-CCChHHHHH----hhCCCCCcEEecCCCCCCHHHHHH----HhcCCCCCEEEcCCCccch
Q 011688 292 GLRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITD 362 (479)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~ 362 (479)
....+...+.|++|++++| .+.+..... +...++|++|++++|.+.+.+... +...+.|++|++++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455678899999999999 998765544 445799999999999999876544 4466899999999999987
Q ss_pred hHHH----hhhcCCCCcEEEe--cCCCCCchhHHhh----hhcCCCCEEEcCCC
Q 011688 363 SGAA----YLRNFKNLRSLEI--CGGGLTDAGVKHI----KDLSSLTLLNLSQN 406 (479)
Q Consensus 363 ~~~~----~~~~~~~L~~L~l--~~~~~~~~~~~~l----~~~~~L~~L~l~~~ 406 (479)
.+.. .+...++|++|++ ++|.+.+.+...+ ...++|++|++++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 6543 3455677888888 6677776544333 33466666666666
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=1.5e-09 Score=99.18 Aligned_cols=88 Identities=27% Similarity=0.318 Sum_probs=42.4
Q ss_pred HhcCCCCCEEEcCC-CccchhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCC
Q 011688 344 LTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 422 (479)
Q Consensus 344 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 422 (479)
+..+++|++|+|++ |.+....+..+..+++|+.|+|++|.+.+..+..|..+++|++|+|++| .+....+..+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-
Confidence 44444555555553 5555444444455555555555555555544444455555555555555 44443333333333
Q ss_pred CCeeecCCCcc
Q 011688 423 LVSLNVSNSRI 433 (479)
Q Consensus 423 L~~L~l~~~~~ 433 (479)
|+.|++.+|++
T Consensus 105 L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 LQELVLSGNPL 115 (347)
T ss_dssp CCEEECCSSCC
T ss_pred ceEEEeeCCCc
Confidence 55555555443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=7e-09 Score=94.72 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=82.2
Q ss_pred EEEccCC-CCChHHHHHhhCCCCCcEEecCC-CCCCHHHHHHHhcCCCCCEEEcCCCccchhHHHhhhcCCCCcEEEecC
Q 011688 304 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 381 (479)
Q Consensus 304 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (479)
.++.+++ .++.. +. +..+++|++|+|++ |.+....+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577766 66653 33 77888899999986 888887777788899999999999999888888888899999999999
Q ss_pred CCCCchhHHhhhhcCCCCEEEcCCCCCCC
Q 011688 382 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 410 (479)
Q Consensus 382 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 410 (479)
|.+....+..+..++ |+.|++.+| .+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 998877655555554 999999988 554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=6.8e-07 Score=76.71 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=34.6
Q ss_pred cCCCCEEEcCCCCCCCH--HHHHHHhcCCCCCeeecCCCccCHHH-HHcccCCCccceecccccccCH-----HHHHHHH
Q 011688 395 LSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA-----NDIKRLQ 466 (479)
Q Consensus 395 ~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-----~~~~~l~ 466 (479)
+++|+.|+|++| .+.. .++..+..+++|+.|++++|.+.... ...+..+ +|++|++++|++.. ...+...
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 344444444444 3333 12233344455555555555444431 1222222 55555555555542 2222222
Q ss_pred hccCCCccccC
Q 011688 467 SRDLPNLVSFR 477 (479)
Q Consensus 467 ~~~~~~l~~l~ 477 (479)
...+|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 24556555543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.03 E-value=5.3e-06 Score=71.17 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=27.2
Q ss_pred cCCCCcEEEecCCCCCchh--HHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCC--CCCeeecCCCccC
Q 011688 370 NFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT--GLVSLNVSNSRIT 434 (479)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~ 434 (479)
++++|+.|++++|.+.+.. +..+..+++|+.|+|++| .+.+. ..+..+. +|++|++++|++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 3445555555555444421 123334455555555555 44432 1122222 5555555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=0.00012 Score=59.14 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCCCcEEecCCC-CCCHHHHH----HHhcCCCCCEEEcCCCccchhHH----HhhhcCCCCcEEEecCCCCCchhHHhh
Q 011688 322 GLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI 392 (479)
Q Consensus 322 ~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l 392 (479)
.-+.|++|+++++ .+.+.+.. ++..-..|+.|+|++|.+...+. ..+..-+.|++|+|+.|.+.+.+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455555555553 45443322 22334456666666665554432 223344566666666666665544433
Q ss_pred ----hhcCCCCEEEcCCCC--CCCHH----HHHHHhcCCCCCeeecCCCc
Q 011688 393 ----KDLSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR 432 (479)
Q Consensus 393 ----~~~~~L~~L~l~~~~--~~~~~----~~~~l~~~~~L~~L~l~~~~ 432 (479)
..-.+|++|+|++|. .+... +...+..-++|+.|+++.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223556666666541 23332 22334445556666665443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.00 E-value=7.9e-05 Score=60.29 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=88.0
Q ss_pred HHHhcCCCCCEEEcCCC-ccchhHH----HhhhcCCCCcEEEecCCCCCchhHHhhh----hcCCCCEEEcCCCCCCCHH
Q 011688 342 AALTSLTGLTHLDLFGA-RITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDK 412 (479)
Q Consensus 342 ~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~ 412 (479)
..+..-+.|++|+++++ .+...+. ..+..-+.|+.|+|++|.+.+.+...++ .-.+|++|+|++| .+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHH
Confidence 34456789999999986 8876543 3446668999999999999887665553 4589999999999 89887
Q ss_pred HHHHH----hcCCCCCeeecCCC---ccCHHHH----HcccCCCccceecccccccCH
Q 011688 413 TLELI----SGLTGLVSLNVSNS---RITSAGL----RHLKPLKNLRSLTLESCKVTA 459 (479)
Q Consensus 413 ~~~~l----~~~~~L~~L~l~~~---~~~~~~~----~~l~~~~~L~~L~l~~~~~~~ 459 (479)
....+ ..-+.|++|++++| .+...+. ..+...+.|++|+++.+.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 66544 44678999999875 4555332 456677899999998886543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.21 E-value=0.018 Score=43.21 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=37.4
Q ss_pred EEEecCCCCC--chhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCCcc
Q 011688 376 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 433 (479)
Q Consensus 376 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 433 (479)
.++-+++.++ .+ +..+ .++|++|+|++| .+....+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4555666655 33 2222 247888888888 77776677777888888888888865
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.07 E-value=0.024 Score=42.55 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=42.3
Q ss_pred CEEEcCCCccc--hhHHHhhhcCCCCcEEEecCCCCCchhHHhhhhcCCCCEEEcCCC
Q 011688 351 THLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 406 (479)
Q Consensus 351 ~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 406 (479)
..++.++..++ ..+ ..+ .++|+.|+|++|.++......|..+++|+.|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36777777776 443 222 257999999999999888888889999999999999
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.72 E-value=0.63 Score=32.70 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=28.7
Q ss_pred CCCcchhhcccCCCCCCEEecCCCCCCChhHHHHhhCCCCCcEEEcCCC
Q 011688 68 DVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116 (479)
Q Consensus 68 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 116 (479)
.++......|..|..|+.+.+.. .++.++..+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34444455677777777777764 355555566666666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.40 E-value=0.41 Score=33.69 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=25.0
Q ss_pred CCchhHHhhhhcCCCCEEEcCCCCCCCHHHHHHHhcCCCCCeeecCCC
Q 011688 384 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 431 (479)
Q Consensus 384 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 431 (479)
++......|..|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 34444445555666666666553 44444555556666666666543
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=23.64 E-value=13 Score=35.58 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHhhhcCcccHHHHHhhccCccceeecCCCC
Q 011688 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYP 42 (479)
Q Consensus 2 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (479)
.++++++ |+++|+.++++++........|++|++......
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~ 465 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLK 465 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHH
Confidence 3688888 999999999999765433345788888765544
Done!