BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011689
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 168/352 (47%), Gaps = 29/352 (8%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
++DVL +G A+VD DD FLE G+ KG L+N +R +L + G + +A+ GGS
Sbjct: 5 KYDVLTIGNAIVDIIARCDDSFLEENGIIKGAXNLIN-ADRAELLYSRXGPAVEAS-GGS 62
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG--T 239
N+ +A LGG+ A G V D LG + +R V F ++P+ DG
Sbjct: 63 AGNTAAGVASLGGR--------AAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL-DGHPP 113
Query: 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299
T + T D +R+ Y G + + ++++++ + EGYL++ P I +
Sbjct: 114 TARSXIFVTEDGERSXNTYLGACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIRE 173
Query: 300 ACEVAHRSGALVAVTASDVTCIERHYDDFWEIV-GNYADIVFANSDEARAFCHFSSKESP 358
A +AH G A T SD C+ R+ +F E+ DIVFAN EA A E
Sbjct: 174 AARIAHAHGRETAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALYE---TEDF 230
Query: 359 ESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVP-VDTCGAGDAYASGILYGI 417
+ L+ L +VT GS + E V + S VDT GAGD YA+G L+G
Sbjct: 231 DRALELLARDCKLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFLFGY 290
Query: 418 L--RGVSDLKGMGALAARIAATVVGQQGTR------LSVRHASELAESFAYR 461
R + + +G LAA I V+GQ G R + R A+ +AE+ ++
Sbjct: 291 TSGRSLEECSKLGNLAAGI---VIGQIGPRPLVSLATAARQAALVAENLYFQ 339
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 157/330 (47%), Gaps = 23/330 (6%)
Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
R+DVL +G A+VD +D FL + K L++ ER +L + G + +A+ GGS
Sbjct: 25 RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAXNLID-AERAELLYSRXGPALEAS-GGS 82
Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239
N+ +A LGGK A G+V +D LG + +R V + ++P G
Sbjct: 83 AGNTAAGVANLGGK--------AAYFGNVAADQLGDIFTHDIRAQGVHYQTKP--KGAFP 132
Query: 240 -TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTIT 298
T + T D +R+ Y G + + ++++ + EGYL++ P I
Sbjct: 133 PTARSXIFVTEDGERSXNTYLGACVELGPEDVEADVVADAKVTYFEGYLWDPPRAKEAIL 192
Query: 299 KACEVAHRSGALVAVTASDVTCIERHYDDFWEIV-GNYADIVFANSDEARAFCHFSSKES 357
+AH+ G + T SD C++R+ +F ++ DIVFAN EA + + + +
Sbjct: 193 DCARIAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSL--YQTDDF 250
Query: 358 PESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVP--VDTCGAGDAYASGILY 415
E+ R ++ + +VT G+ I +KG Y + + VDT GAGD +ASG LY
Sbjct: 251 EEALNR-IAADCKIAAVTXSENGAVI-LKGRERYYVNAIRIREVVDTTGAGDLFASGFLY 308
Query: 416 GILRGVSDLKGMGALAARIAATVVGQQGTR 445
G +G S L+ G L A V+ Q G R
Sbjct: 309 GYTQGRS-LEDCGKLGCLAAGIVIQQIGPR 337
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 105/269 (39%), Gaps = 45/269 (16%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLG---------------G 217
Y GGS +N V L+RLG K VA+ +G+D G G
Sbjct: 48 EYTRHFGGSPANIAVNLSRLGKK--------VALISRLGADAFGNYLLDVLKGEQIITDG 99
Query: 218 FYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISK 277
+ K RR + + S+ + TPD L Y+ + D + LI +
Sbjct: 100 IQQDKERRTTIVYVSKSTR-----------TPD----WLPYREADXYLQEDDIIFELIKR 144
Query: 278 TNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDD---FWEIVGN 334
+ +F + ++ T KA A G +V + DD E + +
Sbjct: 145 SKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIIS 204
Query: 335 YADIVFANSDEARAFCHFSSKESPES-TTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIP 393
AD V + D+AR H +SPE+ RYL V V +T G G E + IP
Sbjct: 205 RADFVKPSLDDAR---HLFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEIIRIP 261
Query: 394 PSPCVPVDTCGAGDAYASGILYGILRGVS 422
VD GAGDA+ SG + G+L G +
Sbjct: 262 AFSEDAVDVTGAGDAFWSGFICGLLDGYT 290
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 22/253 (8%)
Query: 171 GCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAF 230
G Y+ A GG +N VA R G N+A G D +G R +L N+
Sbjct: 33 GNHYQVAFGGKGANQAVAAGRSGA--------NIAFIACTGDDSIGESVRQQLATDNIDI 84
Query: 231 CS-EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFE 289
IK +TG ++ + + + + G ++ ++ P LV + I L +
Sbjct: 85 TPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALS--PALVEA-QRERIANASALLMQ 141
Query: 290 LPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF 349
L + ++ A ++AH++ +VA+ + + D+ +V DI+ N EA
Sbjct: 142 LESPLESVMAAAKIAHQNKTIVALNPAPARELP---DELLALV----DIITPNETEAEKL 194
Query: 350 C--HFSSKESPESTTRYLSHF-VPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAG 406
+ E + L + V +T G+RG + V GE +P VDT AG
Sbjct: 195 TGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAG 254
Query: 407 DAYASGILYGILR 419
D + ++ +L
Sbjct: 255 DTFNGALITALLE 267
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 124/310 (40%), Gaps = 31/310 (10%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
+ G+G ++D S +VD DFL++ L+ + L + + + + AGGS N
Sbjct: 9 LFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQN 68
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
S+ ++ I P G +G D G + K A+V + TGT
Sbjct: 69 SI----KVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 124
Query: 245 VLTTPDAQRAMLAYQGTSSTINYDPCL-----VNLISKTNIFIVEGYLFEL-PDTIRTIT 298
T D R+++A ++ + L L+ K + + G+ + P+++
Sbjct: 125 ACITGD-NRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESV---- 179
Query: 299 KACEVAHRSGALVAVTASDVTC--IERHYDDFWEIVGNYADIVFANSDEARAFCH---FS 353
+VAH + + +++ I + Y + V Y DI+F N EA F F
Sbjct: 180 --LKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFE 237
Query: 354 SKESPE--STTRYL----SHFVPLVSVTDGARGSYIGVKGEAV---YIPPSPCVPVDTCG 404
+K+ E T+ L S +V T G + + + E + +DT G
Sbjct: 238 TKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNG 297
Query: 405 AGDAYASGIL 414
AGDA+ G L
Sbjct: 298 AGDAFVGGFL 307
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 130/331 (39%), Gaps = 30/331 (9%)
Query: 132 MVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRV--LRAMDGCSYKAAAGGSLSNSLVAL 189
++D S V D+FL + GLE+GT L++ ++G + M Y GGS N + +
Sbjct: 17 LLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRY--VPGGSGLN-VARV 73
Query: 190 ARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTP 249
A+ + G V G + D G + + E +G V T
Sbjct: 74 AQWMQQAYKGKF--VTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCIT- 130
Query: 250 DAQRAMLAYQGTSSTINYD----PCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAH 305
+R ++A G ++ ++ + P +V + ++ IF G F L + + +AC A
Sbjct: 131 GKERTLVADLGAANHLSSEHMRSPAVVRAMDESRIFYFSG--FTLTVDVNHVLQACRKAR 188
Query: 306 RSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFSSKESP--ESTTR 363
L + S ++ E++ Y DI+ AN EA+ F + ++ E R
Sbjct: 189 EVDGLFMINLSAPFIMQFFSAQLGEVL-PYTDIIVANRHEAKEFANMMKWDTDCVEEIAR 247
Query: 364 YLSHFVP-------LVSVTDGARGSYIGVKGEAVYIPPSPCVP----VDTCGAGDAYASG 412
VP +V T + + K + V P P + +D GAGDA+ G
Sbjct: 248 RAVSEVPYTGTKGRVVVFTRDIESTVLATK-DGVETVPVPQLDQDKVIDMNGAGDAFMGG 306
Query: 413 ILYGILRGVSDLKGMGALAARIAATVVGQQG 443
L G DL+ A V+ + G
Sbjct: 307 FLSAYAVG-KDLRRCCETGHYTAQEVIQRDG 336
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 39/268 (14%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLR-----RAN 227
++ GGS +N ++ ++LG L G + D G F + R +N
Sbjct: 38 TFSKYVGGSPANIVIGSSKLG--------LKAGFIGKIADDQHGRFIESYXRGVGVDTSN 89
Query: 228 VAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVN--LISKTNIFIVEG 285
+ E K G T I +P+ + ++L Y+ + + P VN I ++ + +V G
Sbjct: 90 LVVDQEGHKTGLAFTEI--KSPE-ECSILXYRQDVADLYLSPEEVNEAYIRRSKLLLVSG 146
Query: 286 YLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDF-WE----------IVGN 334
+ + KA +A R+ V E Y + WE +V
Sbjct: 147 TALSKSPSREAVLKAIRLAKRNDVKV--------VFELDYRPYSWETPEETAVYYSLVAE 198
Query: 335 YADIVFANSDEARAFCHFSSKESPESTTRYL-SHFVPLVSVTDGARGSYIGVK-GEAVYI 392
+DIV +E + + K + T RYL H L+ + G GS+ K GEA
Sbjct: 199 QSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRG 258
Query: 393 PPSPCVPVDTCGAGDAYASGILYGILRG 420
+ T GAGD+YAS LY ++ G
Sbjct: 259 YAYKTKVLKTFGAGDSYASAFLYALISG 286
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 102/274 (37%), Gaps = 23/274 (8%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG 238
GG+ N VALARLG + V G VG D LG +LR V G
Sbjct: 33 GGAEVNVAVALARLG--------VKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPG 84
Query: 239 TTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVN--LISKTNIFIVEGYLFELPDTIRT 296
TG + P Q + Y+ S+ P + + + G L R
Sbjct: 85 FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARA 144
Query: 297 ITK-ACEVAHRSGALVA--VTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFS 353
+ A E A R G V+ V F E D++F + +EA
Sbjct: 145 FSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALPGVDLLFLSEEEAELLFG-- 202
Query: 354 SKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGI 413
E R LS P V + GA+G++ V G V VD GAGDA+A+G
Sbjct: 203 ---RVEEALRALS--APEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGY 257
Query: 414 LYGILRGV---SDLKGMGALAARIAATVVGQQGT 444
L G + G+ L+ L A +AA+ +G
Sbjct: 258 LAGAVWGLPVEERLRLANLLGASVAASRGDHEGA 291
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 44/357 (12%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V G+G ++D DD + L+K L + AGG+ N
Sbjct: 27 VFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLN 86
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA----FCSEPIKDGTT 240
++ + + KP + G +G+D G + + ++ EP+ T
Sbjct: 87 TVKMIQWIIQKP-----FVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL---MT 138
Query: 241 GTVIVLTTPDAQRAMLAYQGTSSTINY----DPCLVNLISKTNIFIVEGYLFELPDTIRT 296
G V VL + + R+M+ Y G + ++ P + +L+ K ++ + G F +
Sbjct: 139 GKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG--FVINTCYEG 195
Query: 297 ITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF--CHFSS 354
+ K + + + L S + + + E++ +Y++IVF N EA A+ H
Sbjct: 196 MLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMI-SYSNIVFGNESEAEAYGEVHGLL 254
Query: 355 KESPESTTRYLSHFVPLVSVTDGARGSYIGV----KGEAVYIPPSPC------------- 397
+++ +T RY++ + DG + + + K +Y S
Sbjct: 255 EDTVHATARYIAD----LPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDD 310
Query: 398 VPVDTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
+DT GAGDA+A+G + +RG + + A A + AA ++ + G L R + L
Sbjct: 311 QIIDTNGAGDAFAAGFIADYIRGKPMITSLHA-AVKAAAYIICRSGFSLGSRDSYSL 366
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 44/357 (12%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V G+G ++D DD + L+K L + AGG+ N
Sbjct: 29 VFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLN 88
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA----FCSEPIKDGTT 240
++ + + KP + G +G+D G + + ++ EP+ T
Sbjct: 89 TVKMIQWIIQKP-----FVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL---MT 140
Query: 241 GTVIVLTTPDAQRAMLAYQGTSSTINY----DPCLVNLISKTNIFIVEGYLFELPDTIRT 296
G V VL + + R+M+ Y G + ++ P + +L+ K ++ + G F +
Sbjct: 141 GKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG--FVINTCYEG 197
Query: 297 ITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF--CHFSS 354
+ K + + + L S + + + E++ +Y++IVF N EA A+ H
Sbjct: 198 MLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMI-SYSNIVFGNESEAEAYGEVHGLL 256
Query: 355 KESPESTTRYLSHFVPLVSVTDGARGSYIGV----KGEAVYIPPSPC------------- 397
+++ +T RY++ + DG + + + K +Y S
Sbjct: 257 EDTVHATARYIAD----LPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDD 312
Query: 398 VPVDTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
+DT GAGDA+A+G + +RG + + A A + AA ++ + G L R + L
Sbjct: 313 QIIDTNGAGDAFAAGFIADYIRGKPMITSLHA-AVKAAAYIICRSGFSLGSRDSYSL 368
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 44/357 (12%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V G+G ++D DD + L+K L + AGG+ N
Sbjct: 29 VFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLN 88
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA----FCSEPIKDGTT 240
++ + + KP + G +G+D G + + ++ EP+ T
Sbjct: 89 TVKMIQWIIQKP-----FVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL---MT 140
Query: 241 GTVIVLTTPDAQRAMLAYQGTSSTINY----DPCLVNLISKTNIFIVEGYLFELPDTIRT 296
G V VL + + R+M+ Y G + ++ P + +L+ K ++ + G F +
Sbjct: 141 GKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWSLVEKAQVYYIAG--FVINTCYEG 197
Query: 297 ITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF--CHFSS 354
+ K + + + L S + + + E++ +Y++IVF N EA A+ H
Sbjct: 198 MLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMI-SYSNIVFGNESEAEAYGEVHGLL 256
Query: 355 KESPESTTRYLSHFVPLVSVTDGARGSYIGV----KGEAVYIPPSPC------------- 397
+++ +T RY++ + DG + + + K +Y S
Sbjct: 257 EDTVHATARYIAD----LPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDD 312
Query: 398 VPVDTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
+DT GAGDA+A+G + +RG + + A A + AA ++ + G L R + L
Sbjct: 313 QIIDTNGAGDAFAAGFIADYIRGKPMITSLHA-AVKAAAYIICRSGFSLGSRDSYSL 368
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 206 MTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTI 265
+G+ G DP RA LR V G +GT I++ A+ +L G ++ +
Sbjct: 75 FSGAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTVLVAPGANAHL 134
Query: 266 NYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHY 325
P + ++ ++ + + E+P + T A A + A+V V AS
Sbjct: 135 TPVP---SAVANCDVLLTQ---LEIP--VATALAAARAAQSADAVVMVNASPAGQDRSSL 186
Query: 326 DDFWEIVGNYADIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGS-YIG 384
D I AD+V AN EA + SP +HFV +T G RG+ Y+G
Sbjct: 187 QDLAAI----ADVVIANEHEANDW------PSPP------THFV----ITLGVRGARYVG 226
Query: 385 VKGEAVYIPPSPCV-PVDTCGAGDAYASGIL 414
G V+ P+P V PVDT GAGD +A G+L
Sbjct: 227 ADG--VFEVPAPTVTPVDTAGAGDVFA-GVL 254
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 28/285 (9%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAF-CSEPIKD 237
GG +N V ARLG +M VG D G Y L++ +++ + KD
Sbjct: 61 GGKGANQCVQAARLGAM--------TSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKD 112
Query: 238 GTTGTVIVLTTPDAQRAMLAYQGTSSTINYDP--CLVNLISKTNIFIVEGYLFELPDTIR 295
TGT ++ + Q ++ G + +N + N+IS+ + + + L T
Sbjct: 113 AATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRAKVMVCQ-----LEITPA 167
Query: 296 TITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHF--- 352
T +A +A RSG V + I F+ + +D+ N EA
Sbjct: 168 TSLEALTMARRSG--VKTLFNPAPAIADLDPQFYTL----SDVFCCNESEAEILTGLTVG 221
Query: 353 SSKESPESTTRYLSHFVPLVSVTDGARGSYI--GVKGEAVYIPPSPCVPVDTCGAGDAYA 410
S+ ++ E+ L +V +T GA G + + E +IP VDT GAGD++
Sbjct: 222 SAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFV 281
Query: 411 SGI-LYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
+ Y L+ M + IAA V GT+ S + +L
Sbjct: 282 GALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDL 326
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 124/329 (37%), Gaps = 45/329 (13%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TGT
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGT 126
Query: 243 VIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACE 302
VL + +R + + G + S IF Y L T + +
Sbjct: 127 CAVLIN-EKERTLCTHLGACGSFRIPENWTTFASGALIFYATAY--TLTATPKNALEVAG 183
Query: 303 VAHR-SGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFSSKESPEST 361
AH A+ + S C+E Y D + + + +I+F N +E + + E
Sbjct: 184 YAHGIPNAIFTLNLSAPFCVEL-YKDAMQSLLLHTNILFGNEEEFAHLAKVHNLVAAEKV 242
Query: 362 TRYLSHFVPLVSVTDGA-----RGSYIGVKGEAVYIP-PSPCVP---------------- 399
+++ V V GA G G V +P +
Sbjct: 243 ALSVANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV 302
Query: 400 --------VDTCGAGDAYASGILYGILRG 420
VDT GAGDA+ G LYG+ +G
Sbjct: 303 PVVAAEKIVDTNGAGDAFVGGFLYGLSQG 331
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 125/332 (37%), Gaps = 51/332 (15%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TGT
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGT 126
Query: 243 VIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACE 302
VL + +R + + G + S IF Y L T + +
Sbjct: 127 CAVLIN-EKERTLCTHLGACGSFRIPEDWTTFASGALIFYATAY--TLTATPKNALEVAG 183
Query: 303 VAHR-SGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFS------SK 355
AH A+ + S C+E Y D + + + +I+F N +E F H + +
Sbjct: 184 YAHGIPNAIFTLNLSAPFCVEL-YKDAMQSLLLHTNILFGNEEE---FAHLAKVHNLVAA 239
Query: 356 ESPESTTRYLSHFVPLVS---------VTDGARGSYIGVKGEAVYIPPSPCVP------- 399
+ +T H V + + GA + +G I
Sbjct: 240 DKTALSTANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHE 299
Query: 400 -----------VDTCGAGDAYASGILYGILRG 420
VDT GAGDA+ G LYG+ +G
Sbjct: 300 VGVPVVAAEKIVDTNGAGDAFVGGFLYGLSQG 331
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 121/317 (38%), Gaps = 35/317 (11%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
++GLG ++D S +V+ D L + ++ L + ++ + AGGS+ N
Sbjct: 26 LVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQN 85
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
SL + +P G VG D + V + TGT
Sbjct: 86 SLRVAQWILQRP-----RTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCA 140
Query: 245 VLTTPDAQRAMLAYQGTSSTINYDPCLVN----LISKTNIFIVEGYLFELPDTIRTITKA 300
VL T QR++ A ++ + + + F V G+ F + + A
Sbjct: 141 VLVT-GTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTV-----SFESA 194
Query: 301 CEVAHRSGALVAVTASDVTC--IERHYDDFWEIVGNYADIVFANSDEARAFC---HFSSK 355
VA + A + +++ + + Y + E + Y D++F N EA A ++ ++
Sbjct: 195 LSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTE 254
Query: 356 ESPESTTRYLSHFVP--------LVSVTDGARGSYIGVKG--EAVYIPPSPCVP---VDT 402
+ E R + +P +V +T G+ + G P P VDT
Sbjct: 255 DLREIGKRIAA--LPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDT 312
Query: 403 CGAGDAYASGILYGILR 419
GAGDA+ G L +L+
Sbjct: 313 NGAGDAFVGGFLAQLLQ 329
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 123/332 (37%), Gaps = 51/332 (15%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 15 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 73
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TG
Sbjct: 74 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGV 126
Query: 243 VIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACE 302
VL + +R + + G + S IF Y L T + +
Sbjct: 127 CAVLIN-EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAY--TLTATPKNAFEVAG 183
Query: 303 VAHR-SGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFS------SK 355
AH A+ + S C+E Y D + + + +I+F N +E F H + +
Sbjct: 184 YAHGIPNAIFTLNLSAPFCVEL-YKDAMQSLLLHTNILFGNEEE---FAHLAKVHNLVAA 239
Query: 356 ESPESTTRYLSHFVPLVS---------VTDGARGSYIGVKGEAVYIPPSPCVP------- 399
E +T H V + + GA + +G I
Sbjct: 240 EKTALSTANKEHAVEVCTGALRLLTAGQNTGATKLVVMTRGHNPVIAAEQTADGTVVVHE 299
Query: 400 -----------VDTCGAGDAYASGILYGILRG 420
VDT GAGDA+ G LY + +G
Sbjct: 300 VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQG 331
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 125/332 (37%), Gaps = 51/332 (15%)
Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
V +G ++D V FL+ L++G L E+ R+ +D + + GGS N
Sbjct: 35 VFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQM-RIYSTLDQFNPTSLPGGSALN 93
Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVA--FCSEPIKDGTTGT 242
S+ + +L KP G A G++G DP G + + +A F P + +TG
Sbjct: 94 SVRVVQKLLRKP--GSA---GYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQ--STGV 146
Query: 243 VIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITKACE 302
VL + +R + + G + S IF Y L T + +
Sbjct: 147 CAVLIN-EKERTLCTHLGACGSFRLPEDWTTFASGALIFYATAY--TLTATPKNALEVAG 203
Query: 303 VAHR-SGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFS------SK 355
AH A+ + S C+E Y D + + + +I+F N +E F H + +
Sbjct: 204 YAHGIPNAIFTLNLSAPFCVEL-YKDAMQSLLLHTNILFGNEEE---FAHLAKVHNLVAA 259
Query: 356 ESPESTTRYLSHFVPLVS-----VTDGARGS----YIGVKGEAVYIPPSPCVP------- 399
E +T H V + + +T G S + +G I
Sbjct: 260 EKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHE 319
Query: 400 -----------VDTCGAGDAYASGILYGILRG 420
VDT GAGDA+ G LY + +G
Sbjct: 320 VGVPVVAAEKIVDTNGAGDAFVGGFLYALSQG 351
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 24/256 (9%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM--LAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFE 289
+ D T+ +IV T D +R+ L + G + ++ P + + F Y
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS--PQDLPPFRQYEWF----YFSS 149
Query: 290 LPDTIRTITKAC-EVAHRSGALVAVTASDVTCIERHY---DDFWEIVGNYADIVFANSDE 345
+ T R +AC E A R DV + + D+ E++ A +
Sbjct: 150 IGLTDRPAREACLEGARRXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVS 209
Query: 346 ARAFCHFSSKESPESTTRYLSHF-VPLVSVTDGARGSYIGVKGEAVYIPPSPCVPV-DTC 403
A C S + YL ++ GA G+ + + E + P+P V V DT
Sbjct: 210 ADELCQLSGASHWQDARYYLRDLGCDTTIISLGADGALL-ITAEGEFHFPAPRVDVVDTT 268
Query: 404 GAGDAYASGILYGILR 419
GAGDA+ G+L+ + R
Sbjct: 269 GAGDAFVGGLLFTLSR 284
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 24/256 (9%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
SY GG+ +N V +ARLGG+ G +G D G F R + V
Sbjct: 44 SYLKCPGGASANVGVCVARLGGE--------CGFIGCLGDDDAGRFLRQVFQDNGVDVTF 95
Query: 233 EPIK-DGTTGTVIVLTTPDAQRAM--LAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFE 289
+ D T+ +IV T D +R+ L + G + ++ P + + F Y
Sbjct: 96 LRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS--PQDLPPFRQYEWF----YFSS 149
Query: 290 LPDTIRTITKAC-EVAHRSGALVAVTASDVTCIERHY---DDFWEIVGNYADIVFANSDE 345
+ T R +AC E A R DV + + D+ E++ A +
Sbjct: 150 IGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVS 209
Query: 346 ARAFCHFSSKESPESTTRYLSHF-VPLVSVTDGARGSYIGVKGEAVYIPPSPCVPV-DTC 403
A C S + YL ++ GA G+ + + E + P+P V V DT
Sbjct: 210 ADELCQLSGASHWQDARYYLRDLGCDTTIISLGADGALL-ITAEGEFHFPAPRVDVVDTT 268
Query: 404 GAGDAYASGILYGILR 419
GAGDA+ G+L+ + R
Sbjct: 269 GAGDAFVGGLLFTLSR 284
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 113/287 (39%), Gaps = 24/287 (8%)
Query: 175 KAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEP 234
KA GG +N +A AR+ + +G+D + F + A++ S
Sbjct: 36 KAFGGGKGANQAIATARMQA--------DTTFITKIGTDGVADFILEDFKVAHID-TSYI 86
Query: 235 IK--DGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPD 292
IK + TG + + Q + Y G + T+ + + +K I + + +L
Sbjct: 87 IKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVIN---AKDAIINADFVVAQLEV 143
Query: 293 TIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF--C 350
I I A E+A G + + + ++ ++ DI+ N EA
Sbjct: 144 PIPAIISAFEIAKAHGVTTVLNPAPAKALP---NELLSLI----DIIVPNETEAELLSGI 196
Query: 351 HFSSKESPESTTRY-LSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAY 409
++++S + Y LS + V +T G +G+Y K ++ +I +DT AGD +
Sbjct: 197 KVTNEQSMKDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTF 256
Query: 410 ASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASELAE 456
+ + + +L + ++ V + G + S+ E+ +
Sbjct: 257 IGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQ 303
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 112/279 (40%), Gaps = 24/279 (8%)
Query: 179 GGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG 238
GG N ++RLG + A+ +G D G F R+ N+ S +D
Sbjct: 43 GGDAINEATIISRLGHR--------TALXSRIGKDAAGQFILDHCRKENIDIQSLK-QDV 93
Query: 239 TTGTVIV--LTTPDAQRAMLAYQ-GTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIR 295
+ T I L T D +R + + G+ +N D S+ + + +F P +
Sbjct: 94 SIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSL-ASIFNSP--LL 150
Query: 296 TITKACEVAHRSGALVAVTASDVTC--IERHYDDFWEIVGNYADIVFANSDEARAFCHFS 353
E+ ++ A + +D + DD E + +Y D +F N EA+ +
Sbjct: 151 DGKALTEIFTQAKARQXIICADXIKPRLNETLDDICEAL-SYVDYLFPNFAEAKLL---T 206
Query: 354 SKES-PESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCV-PVDTCGAGDAYAS 411
KE+ E +L+ V V + G G +I +P + +DT GAGD +AS
Sbjct: 207 GKETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIGAGDNFAS 266
Query: 412 GILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRH 450
G + +L G +L+ A AA V G V++
Sbjct: 267 GFIAALLEG-KNLRECARFANATAAISVLSVGATTGVKN 304
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 37/244 (15%)
Query: 168 AMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRAN 227
++ G GG +N + L+R G + + + G+D G + R +++
Sbjct: 28 SIHGVKVSQDIGGKGANQAIILSRCG--------IETRLIAATGNDSNGAWIRQQIKNEP 79
Query: 228 VAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKT--NIFIVEG 285
+ + + + T I+L + D A++ + T + D + + +I + +G
Sbjct: 80 LXLLPDGHFNQHSDTSIILNSADGDNAIITTTAAADTFSLDEXIPHXADAVAGDILLQQG 139
Query: 286 YLFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDE 345
F L D R + + A G S V H W ++ DI N E
Sbjct: 140 N-FSL-DKTRAL---FQYARSRGXTTVFNPSPVNPDFCH---LWPLI----DIAVVNESE 187
Query: 346 ARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGA 405
A + K + +T GA G+++ +G+ + P P +DT GA
Sbjct: 188 AELLQPYGVKT---------------LVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGA 232
Query: 406 GDAY 409
GD +
Sbjct: 233 GDTF 236
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 364 YLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVP----VDTCGAGDAYASGILYGILR 419
YL L+ VT G++GS I K + + IP C+ +D GAGD+Y +G L ++
Sbjct: 204 YLERVDALI-VTKGSKGSVIYTKDKKIEIP---CIKAGKVIDPTGAGDSYRAGFLSAYVK 259
Query: 420 GVSDLKGMGALAARIAATVVGQQGTRLSVRHASELAE 456
G DL+ G + A A+ VV +G + ++ ++ E
Sbjct: 260 GY-DLEKCGLIGAATASFVVEAKGCQTNLPTWDKVVE 295
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 38/256 (14%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSE 233
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENVD-TRG 78
Query: 234 PIKDGTTGTVIVLTT-PDAQRAMLAY------QGTSSTINYDPCLVNLISKTNIFIVEGY 286
+KD T IV A + L Y T + IN+D ++ + I
Sbjct: 79 IVKDEKKHTGIVFVQLKGASPSFLLYDDVAYFNXTLNDINWD-----IVEEAKIVNFGSV 133
Query: 287 LFELPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDD----FWEIVGNYADIVFAN 342
+ + T+ K + + +L+A + + R ++ E ADIV A
Sbjct: 134 ILARNPSRETVXKVIK-KIKGSSLIAFDVNLRLDLWRGQEEEXIKVLEESIKLADIVKA- 191
Query: 343 SDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCV-PVD 401
S+E + E S L ++T G +G + +K E V PS V P+D
Sbjct: 192 SEEEVLYLENQGVEVKGSX---------LTAITLGPKGCRL-IKNETVVDVPSYNVNPLD 241
Query: 402 TCGAGDAYASGILYGI 417
T GAGDA+ + +L GI
Sbjct: 242 TTGAGDAFXAALLVGI 257
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 103/259 (39%), Gaps = 44/259 (16%)
Query: 174 YKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSE 233
++ GG+ +N V ++RLG K ++ VG+DP G + +L + NV
Sbjct: 28 FEKHPGGAPANVAVGVSRLGVKS--------SLISKVGNDPFGEYLIEELSKENVD-TRG 78
Query: 234 PIKDGTTGTVIVLTT-PDAQRAMLAY------QGTSSTINYDPCLVNLISKTNIFIVEGY 286
+KD T IV A + L Y T + IN+D ++ + I
Sbjct: 79 IVKDEKKHTGIVFVQLKGASPSFLLYDDVAYFNXTLNDINWD-----IVEEAKIVNFGSV 133
Query: 287 LFELPDTIRTITKACEVAHRSGALVAVTASDVTC-------IERHYDDFWEIVGNYADIV 339
+ + T+ K + S ++ A DV E E ADIV
Sbjct: 134 ILARNPSRETVXKVIKKIKGS----SLIAFDVNLRLDLWRGQEEEXIKVLEESIKLADIV 189
Query: 340 FANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCV- 398
A S+E + E S L ++T G +G + +K E V PS V
Sbjct: 190 KA-SEEEVLYLENQGVEVKGSX---------LTAITLGPKGFRL-IKNETVVDVPSYNVN 238
Query: 399 PVDTCGAGDAYASGILYGI 417
P+DT GAGDA+ + +L GI
Sbjct: 239 PLDTTGAGDAFXAALLVGI 257
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 336 ADIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPS 395
A + N EA+ C + E +R V + +T G G+ I + IP
Sbjct: 186 ATYIAVNDYEAKLVCDKTGWSEDEIASR-----VQALIITRGEHGATIRHRDGTEQIPAV 240
Query: 396 PCVPV-DTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
V D G GDA+ G+LYGI G D G LA+ + A + QG + +E+
Sbjct: 241 RAERVIDPTGCGDAFRGGLLYGIEHGF-DWATAGRLASLMGALKIAHQGPQTYAPTRAEI 299
Query: 455 ----AESFAYRIKSSTVGS 469
+F YR K S + S
Sbjct: 300 DARFETAFGYRPKGSKLRS 318
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 29/280 (10%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
S + GG+ SNS L+ LG A GS+ + F LRR +V
Sbjct: 34 SQRWQRGGNASNSCTVLSLLGAP--------CAFMGSMAPGHVADFVLDDLRRYSVDLRY 85
Query: 233 EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFE-LP 291
+ TTG+V P A + G+ + + YD L + +S T+ V+ F+ +
Sbjct: 86 TVFQ--TTGSV-----PIATVIINEASGSRTILYYDRSLPD-VSATDFEKVDLTQFKWIH 137
Query: 292 DTIRTITKACEVAHRSGALVAVTASDVTC-----IERHYDDFWEIVGNYADIVFANSDEA 346
R ++ ++ R A + +E+ ++ +++ G Y D+VF + D A
Sbjct: 138 IEGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFG-YGDVVFVSKDVA 196
Query: 347 RAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVY---IPPSPCVPVDTC 403
+ S++E+ + LV +G G+ ++ PP P V VDT
Sbjct: 197 KHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPP-PRV-VDTL 254
Query: 404 GAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQG 443
GAGD + + +++ + +G S + + ++A G QG
Sbjct: 255 GAGDTFNASVIFSLSQGRSVQEAL-RFGCQVAGKKCGLQG 293
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 336 ADIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPS 395
A + N EA+ C + E +R V + +T G G+ I + IP
Sbjct: 194 ATYIAVNDYEAKLVCDKTGWSEDEIASR-----VQALIITRGEHGATIRHRDGTEQIPAV 248
Query: 396 PCVPV-DTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
V D G GDA+ G+LYGI G D G LA+ + A + QG + +E+
Sbjct: 249 RAERVIDPTGCGDAFRGGLLYGIEHGF-DWATAGRLASLMGALKIAHQGPQTYAPTRAEI 307
Query: 455 ----AESFAYRIK 463
+F YR K
Sbjct: 308 DARFETAFGYRPK 320
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 336 ADIVFANSDEARAFCHFSSKESPESTTRYLSHF-VPLVSVTDGARGSYIGVKGEAVYIPP 394
AD V +E R + + +PE R+ LV V GA G+Y + + +
Sbjct: 215 ADWVLPGXEEGR---FLTGETTPEGVARFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAG 271
Query: 395 SPCVPV-DTCGAGDAYASGILYGILRGV 421
P V DT GAGD +A G++ +L G+
Sbjct: 272 FPVAEVVDTVGAGDGFAVGVISALLDGL 299
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 23/277 (8%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRR--ANVAF 230
S + GG+ SNS L+ LG A GS+ + F A RR +V+
Sbjct: 49 SQRWQRGGNASNSCTVLSLLGAP--------CAFMGSMAPGHVADFLVADFRRRGVDVSQ 100
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTIN-YDPCLVNLISKTNIFIVEGYLFE 289
+ K T + ++ + R ++ + + ++ D V+L I I E
Sbjct: 101 VAWQSKGDTPSSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIEGRNASE 160
Query: 290 LPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF 349
++ I AH + +E+ ++ +++ G Y D+VF + D A+
Sbjct: 161 QVKMLQRID-----AHNTRQPPEQKIRVSVEVEKPREELFQLFG-YGDVVFVSKDVAKHL 214
Query: 350 CHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVY---IPPSPCVPVDTCGAG 406
S++E+ + LV +G G+ ++ PP P V VDT GAG
Sbjct: 215 GFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPP-PRV-VDTLGAG 272
Query: 407 DAYASGILYGILRGVSDLKGMGALAARIAATVVGQQG 443
D + + +++ + +G S + + ++A G QG
Sbjct: 273 DTFNASVIFSLSQGRSVQEAL-RFGCQVAGKKCGLQG 308
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 111/277 (40%), Gaps = 23/277 (8%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRR--ANVAF 230
S + GG+ SNS L+ LG A GS+ + F A RR +V+
Sbjct: 34 SQRWQRGGNASNSCTVLSLLGAP--------CAFMGSMAPGHVADFLVADFRRRGVDVSQ 85
Query: 231 CSEPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTIN-YDPCLVNLISKTNIFIVEGYLFE 289
+ K T + ++ + R ++ + + ++ D V+L I I E
Sbjct: 86 VAWQSKGDTPSSCCIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIEGRNASE 145
Query: 290 LPDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAF 349
++ I AH + +E+ ++ +++ G Y D+VF + D A+
Sbjct: 146 QVKMLQRID-----AHNTRQPPEQKIRVSVEVEKPREELFQLFG-YGDVVFVSKDVAKHL 199
Query: 350 CHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVY---IPPSPCVPVDTCGAG 406
S++E+ + LV +G G+ ++ PP P V VDT GAG
Sbjct: 200 GFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPP-PRV-VDTLGAG 257
Query: 407 DAYASGILYGILRGVSDLKGMGALAARIAATVVGQQG 443
D + + +++ + +G S + + ++A G QG
Sbjct: 258 DTFNASVIFSLSQGRSVQEAL-RFGCQVAGKKCGLQG 293
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 33/282 (11%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
S + GG+ SNS L+ LG A GS + F LRR +V
Sbjct: 48 SQRWQRGGNASNSCTILSLLGAP--------CAFXGSXAPGHVADFVLDDLRRYSVDLRY 99
Query: 233 EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFEL-- 290
+ TTG+V P A + G+ + + YD L + +S T+ V+ F+
Sbjct: 100 TVFQ--TTGSV-----PIATVIINEASGSRTILYYDRSLPD-VSATDFEKVDLTQFKWIH 151
Query: 291 ------PDTIRTITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSD 344
+ ++ + + R + S +E+ ++ +++ G Y D+VF + D
Sbjct: 152 IEGRNASEQVKXLQRIDAHNTRQPPEQKIRVS--VEVEKPREELFQLFG-YGDVVFVSKD 208
Query: 345 EARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVY---IPPSPCVPVD 401
A+ S++E+ + LV +G G+ ++ PP P V VD
Sbjct: 209 VAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPP-PRV-VD 266
Query: 402 TCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQG 443
T GAGD + + +++ + +G S + + ++A G QG
Sbjct: 267 TLGAGDTFNASVIFSLSQGRSVQEAL-RFGCQVAGKKCGLQG 307
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 337 DIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSP 396
D + N DE A S E R L+ +P + V+ GA+GS G+ + P
Sbjct: 184 DFIKPNEDEVIAILD-EKTNSLEENIRTLAEKIPYLVVSLGAKGSICAHNGKLYQVIPPK 242
Query: 397 CVPVDTCGAGDAYASGILYGILRGVSDLKGMGALAARIAATVVGQQGTRLSVRHASEL 454
+ GAGD + + G+ + + + A+ V+ Q + + A +L
Sbjct: 243 VQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSASAVMQQDSSSFDLEAAGKL 300
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 382 YIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYG 416
Y+ + E P + +D GAGDAYA+GILYG
Sbjct: 255 YLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYG 289
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 24/212 (11%)
Query: 240 TGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIFIVEGYLFELPDTIRTITK 299
TG + Q ++ + G ++ + + N +S+++I +++ E+P
Sbjct: 103 TGRAFIEVDKTGQNRIIIFPGANAELKKELIDWNTLSESDILLLQN---EIP-----FET 154
Query: 300 ACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARA-----FCHFSS 354
E A R +V + I E + Y D + N E A F F +
Sbjct: 155 TLECAKRFNGIVIFDPAPAQGIN-------EEIFQYLDYLTPNEKEIEALSKDFFGEFLT 207
Query: 355 KESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGIL 414
E ++ ++L V V V G +G + K E + P VDT AGD +
Sbjct: 208 VE--KAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFA 265
Query: 415 YGILRGVSDLKGM--GALAARIAATVVGQQGT 444
+ G + + + G AA I+ T +G Q +
Sbjct: 266 VALSEGKNPEEAVIFGTAAAAISVTRLGAQSS 297
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 34/235 (14%)
Query: 203 NVAMTGSVGSDPLGGFYRAKLRRANV--AFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQG 260
N A+ VG+DP G + A+L R V + + T T + PD +
Sbjct: 57 NSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREP 116
Query: 261 TSSTINYDPCLVNL--ISKTNI--FIVEGYLFELPDTIRTITKACEVAHRSGALVAVTAS 316
+ +N + V+L + + +I F + G+ E HR L
Sbjct: 117 KAPDLNIESADVSLDDVREADILWFTLTGFSEE----------PSRGTHRE-ILTTRANR 165
Query: 317 DVTCIERHY-DDFWE----------IVGNYADIVFANSDEARAFCHFSSKES-PESTTR- 363
T + Y FWE ++ + N +E C + E+ PE R
Sbjct: 166 RHTIFDLDYRPXFWESPEEATKQAEWALQHSTVAVGNKEE----CEIAVGETEPERAGRA 221
Query: 364 YLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGIL 418
L V L V G +G K E V +PP ++ GAGDA+ + +G+L
Sbjct: 222 LLERGVELAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLL 276
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 374 VTDGARGSYIGVKGEAVYIPPSPCVPV-DTCGAGDAYASGILYGILRGVSDLKGMGALAA 432
+T G GSY+ G V +P VPV DT GAGD++ + IL G S + LA
Sbjct: 214 LTCGINGSYVFTPG-VVSFQETPKVPVADTVGAGDSFTAAFCASILNGKS-VPEAHKLAV 271
Query: 433 RIAATVVGQQG 443
++A V Q G
Sbjct: 272 EVSAYVCTQSG 282
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 337 DIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSP 396
D + N DE A S E R L+ +P + V+ GA+GS G+ + P
Sbjct: 184 DFIKPNEDEVIAILD-EKTNSLEENIRTLAEKIPYLVVSLGAKGSICAHNGKLYQVIPPK 242
Query: 397 CVPVDTCGAGDAYASGILYGI 417
+ GAGD + + G+
Sbjct: 243 VQERNDTGAGDVFVGAFIAGL 263
>pdb|2NWH|A Chain A, Carbohydrate Kinase From Agrobacterium Tumefaciens
Length = 317
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 14/126 (11%)
Query: 297 ITKACEVAHRSGALVAVTASDVTCIERHYDDFWEIVGNYADIVFANSDEARAFCHFSSKE 356
I +ACE + A +A++ + ++ D DI+F N EARA +++
Sbjct: 155 IARACE---KPLAAIAISPAKAVKLKAALGDI--------DILFMNEAEARALTGETAEN 203
Query: 357 SPESTTRYLSHFVPLVSVTDGARGSYIGVKG--EAVYIPPSPCVPVDTCGAGDAYASGIL 414
+ + VT GA + G +A+ PP D GAGDA ASG L
Sbjct: 204 VRDWPNILRKAGLSGGVVTRGA-SEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYL 262
Query: 415 YGILRG 420
I G
Sbjct: 263 AAIAEG 268
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 337 DIVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSP 396
DI F D+ A + + + R + V V V GA + + GEA+ P+
Sbjct: 194 DIAFLTLDDEDAL--WGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAV 251
Query: 397 CVP----VDTCGAGDAYASGIL 414
+P +DT AGD++++G L
Sbjct: 252 KLPKEKVIDTTAAGDSFSAGYL 273
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 98/270 (36%), Gaps = 32/270 (11%)
Query: 173 SYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCS 232
++ AGG+ +N VA+ARLGG V G +GSD G F A V
Sbjct: 30 AFLQCAGGAPANVAVAVARLGGA--------VQFVGXLGSDXFGDFLFDSFAEAGVV-TD 80
Query: 233 EPIKDGTTGTVIVLTTPDAQRAMLAYQGTSSTINYDPCLVNLISKTNIF----IVEGYLF 288
++ T T + DA G S Y P +L+ + F + +F
Sbjct: 81 GIVRTSTAKTALAFVALDA-------HGERSFSFYRPPAADLLFRVEHFQDASFSDALIF 133
Query: 289 ELPDTIRTITKACEV-------AHRSGALVAVTASDVTCI----ERHYDDFWEIVGNYAD 337
T EV A +GA+V+ + + E W+ + + AD
Sbjct: 134 HACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRPXLWPNGENPASRLWKGL-SLAD 192
Query: 338 IVFANSDEARAFCHFSSKESPESTTRYLSHFVPLVSVTDGARGSYIGVKGEAVYIPPSPC 397
+V +S+E + + ++ + L+ VTD A + + +P
Sbjct: 193 VVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFRV 252
Query: 398 VPVDTCGAGDAYASGILYGILRGVSDLKGM 427
D+ AGDA+ G LY + D +
Sbjct: 253 QVQDSNAAGDAFVGGXLYTFAQQFDDAAAL 282
>pdb|3K51|B Chain B, Crystal Structure Of Dcr3-Tl1a Complex
pdb|3MI8|D Chain D, The Structure Of Tl1a-Dcr3 Complex
Length = 176
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 320 CIERHYDDFWEIV--GNYADIVFANSDEARAFCHFSSKESPESTTRYLSH 367
C RHY FW + Y +++ +E CH + + T + +H
Sbjct: 46 CPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAH 95
>pdb|3MHD|D Chain D, Crystal Structure Of Dcr3
Length = 174
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 320 CIERHYDDFWEIV--GNYADIVFANSDEARAFCHFSSKESPESTTRYLSH 367
C RHY FW + Y +++ +E CH + + T + +H
Sbjct: 44 CPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAH 93
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 400 VDTCGAGDAYASGILYGILRGV-SDLKGMGALAARIAATVVGQQGTRLSVRHASELA 455
VD GAGD++A ++YG L G S K A AA + LS+ +LA
Sbjct: 285 VDRVGAGDSFAGALIYGSLXGFDSQKKAEFAAAASCLKHTIPGDFVVLSIEEIEKLA 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,313,041
Number of Sequences: 62578
Number of extensions: 477827
Number of successful extensions: 1058
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 59
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)