Query 011690
Match_columns 479
No_of_seqs 164 out of 2112
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2941 Beta-1,4-mannosyltrans 100.0 6.1E-69 1.3E-73 527.2 41.3 431 1-472 9-442 (444)
2 cd03816 GT1_ALG1_like This fam 100.0 1.2E-49 2.5E-54 418.4 45.4 412 2-470 1-415 (415)
3 PLN02275 transferase, transfer 100.0 3.3E-47 7.2E-52 394.0 40.3 370 1-432 1-371 (371)
4 PRK10307 putative glycosyl tra 100.0 3.7E-38 8.1E-43 329.6 41.7 380 7-474 3-409 (412)
5 PLN02871 UDP-sulfoquinovose:DA 100.0 1.9E-37 4.2E-42 330.2 40.0 347 20-475 79-437 (465)
6 TIGR03449 mycothiol_MshA UDP-N 100.0 4.6E-37 1E-41 319.7 41.5 360 22-474 27-403 (405)
7 cd03796 GT1_PIG-A_like This fa 100.0 6.4E-37 1.4E-41 319.3 40.4 344 21-475 20-370 (398)
8 TIGR03088 stp2 sugar transfera 100.0 2.6E-36 5.7E-41 310.5 40.3 362 4-473 2-373 (374)
9 cd03805 GT1_ALG2_like This fam 100.0 9.4E-36 2E-40 307.3 36.0 367 5-463 2-390 (392)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 3.3E-35 7.1E-40 311.0 39.2 361 23-464 34-433 (439)
11 cd04962 GT1_like_5 This family 100.0 7.9E-35 1.7E-39 297.2 39.0 351 6-464 2-363 (371)
12 PRK15427 colanic acid biosynth 100.0 2.8E-34 6.1E-39 301.2 40.2 271 98-464 115-398 (406)
13 TIGR02468 sucrsPsyn_pln sucros 100.0 3.5E-34 7.5E-39 321.9 42.8 385 18-466 194-665 (1050)
14 cd03818 GT1_ExpC_like This fam 100.0 2.9E-34 6.2E-39 299.0 38.6 360 18-461 10-390 (396)
15 cd03800 GT1_Sucrose_synthase T 100.0 8.4E-34 1.8E-38 291.6 38.8 353 20-463 26-394 (398)
16 cd05844 GT1_like_7 Glycosyltra 100.0 3.7E-34 8.1E-39 291.8 33.0 271 99-462 80-361 (367)
17 PRK15484 lipopolysaccharide 1, 100.0 2E-33 4.3E-38 292.1 38.9 343 17-477 19-379 (380)
18 TIGR02149 glgA_Coryne glycogen 100.0 1.4E-33 3.1E-38 290.7 37.2 349 19-472 16-386 (388)
19 cd03819 GT1_WavL_like This fam 100.0 1.7E-33 3.7E-38 284.9 35.4 322 16-453 10-346 (355)
20 cd03817 GT1_UGDG_like This fam 100.0 4.7E-33 1E-37 279.3 37.9 282 100-464 83-369 (374)
21 cd03794 GT1_wbuB_like This fam 100.0 1.3E-32 2.8E-37 276.5 40.5 358 16-461 15-389 (394)
22 PRK15179 Vi polysaccharide bio 100.0 7.4E-33 1.6E-37 305.2 41.2 279 100-465 399-687 (694)
23 cd04955 GT1_like_6 This family 100.0 1E-32 2.2E-37 279.8 38.9 336 17-464 13-357 (363)
24 cd03806 GT1_ALG11_like This fa 100.0 5E-33 1.1E-37 292.9 37.8 360 13-460 10-415 (419)
25 PRK00654 glgA glycogen synthas 100.0 4E-33 8.6E-38 297.4 37.2 314 100-475 117-465 (466)
26 cd03812 GT1_CapH_like This fam 100.0 9E-33 2E-37 280.0 35.2 324 18-451 11-344 (358)
27 cd03795 GT1_like_4 This family 100.0 4.2E-32 9E-37 274.2 37.2 333 15-459 13-354 (357)
28 cd03808 GT1_cap1E_like This fa 100.0 7.9E-32 1.7E-36 267.9 38.5 343 7-463 2-355 (359)
29 cd03814 GT1_like_2 This family 100.0 5.3E-32 1.2E-36 272.0 37.5 339 18-464 17-358 (364)
30 cd03807 GT1_WbnK_like This fam 100.0 7.9E-32 1.7E-36 269.0 37.3 347 6-464 2-359 (365)
31 cd03799 GT1_amsK_like This is 100.0 2.4E-32 5.2E-37 275.8 33.8 266 99-463 77-353 (355)
32 TIGR02095 glgA glycogen/starch 100.0 3E-32 6.5E-37 290.9 35.3 304 100-464 127-465 (473)
33 cd04951 GT1_WbdM_like This fam 100.0 1.6E-31 3.5E-36 270.2 38.5 268 100-464 78-353 (360)
34 TIGR02470 sucr_synth sucrose s 100.0 1.7E-31 3.6E-36 295.0 41.5 377 28-465 300-741 (784)
35 cd03801 GT1_YqgM_like This fam 100.0 3.3E-31 7.1E-36 262.8 38.8 276 100-463 84-367 (374)
36 cd03820 GT1_amsD_like This fam 100.0 3.8E-31 8.2E-36 261.8 37.1 316 24-462 22-343 (348)
37 PRK09922 UDP-D-galactose:(gluc 100.0 1.4E-31 3E-36 275.4 35.1 259 100-475 83-358 (359)
38 cd03822 GT1_ecORF704_like This 100.0 8.3E-31 1.8E-35 264.0 38.4 271 100-464 75-360 (366)
39 PLN02846 digalactosyldiacylgly 100.0 4.5E-31 9.8E-36 278.7 37.4 352 1-465 1-385 (462)
40 PRK14099 glycogen synthase; Pr 100.0 9.2E-31 2E-35 280.4 39.6 310 100-476 132-482 (485)
41 cd03821 GT1_Bme6_like This fam 100.0 1.3E-30 2.7E-35 261.3 37.2 279 99-462 85-370 (375)
42 PLN02949 transferase, transfer 100.0 7.1E-31 1.5E-35 279.4 37.1 234 163-475 212-459 (463)
43 cd03792 GT1_Trehalose_phosphor 100.0 6.5E-31 1.4E-35 271.2 34.3 269 100-464 84-364 (372)
44 PLN02939 transferase, transfer 100.0 3.5E-30 7.6E-35 286.0 40.7 314 100-475 609-969 (977)
45 cd03809 GT1_mtfB_like This fam 100.0 8.4E-31 1.8E-35 263.9 32.8 272 100-465 84-363 (365)
46 cd03798 GT1_wlbH_like This fam 100.0 4.1E-30 8.9E-35 256.2 36.3 271 99-462 91-367 (377)
47 PLN00142 sucrose synthase 100.0 1.8E-30 3.9E-35 286.9 36.7 379 26-464 322-763 (815)
48 cd03813 GT1_like_3 This family 100.0 1.1E-30 2.3E-35 279.4 33.6 276 99-463 171-468 (475)
49 PLN02316 synthase/transferase 100.0 9E-30 2E-34 287.0 42.5 294 100-474 708-1035(1036)
50 cd03791 GT1_Glycogen_synthase_ 100.0 4.7E-30 1E-34 273.3 37.2 303 100-464 128-469 (476)
51 cd03802 GT1_AviGT4_like This f 100.0 3.1E-30 6.6E-35 259.1 33.1 241 100-464 86-329 (335)
52 PRK15490 Vi polysaccharide bio 100.0 4.4E-30 9.6E-35 273.2 36.0 281 99-467 278-571 (578)
53 cd03811 GT1_WabH_like This fam 100.0 7.8E-30 1.7E-34 252.4 34.9 324 15-451 11-345 (353)
54 PRK14098 glycogen synthase; Pr 100.0 1.3E-29 2.7E-34 271.9 38.3 311 100-474 140-487 (489)
55 cd03823 GT1_ExpE7_like This fa 100.0 2.4E-29 5.1E-34 251.9 37.2 242 100-452 95-343 (359)
56 TIGR03087 stp1 sugar transfera 100.0 2.5E-29 5.5E-34 262.1 34.0 347 14-463 13-388 (397)
57 TIGR02918 accessory Sec system 100.0 3.1E-29 6.8E-34 269.2 32.3 269 100-472 210-499 (500)
58 cd03804 GT1_wbaZ_like This fam 100.0 2.8E-29 6.1E-34 256.1 30.1 327 7-451 2-340 (351)
59 cd04946 GT1_AmsK_like This fam 100.0 1.8E-28 3.9E-33 257.3 36.5 264 101-464 127-404 (407)
60 cd03825 GT1_wcfI_like This fam 100.0 1.8E-28 3.8E-33 248.5 33.2 279 100-463 50-356 (365)
61 PRK10125 putative glycosyl tra 100.0 4.9E-28 1.1E-32 254.0 33.7 323 4-428 1-365 (405)
62 PLN02501 digalactosyldiacylgly 100.0 1.9E-27 4E-32 256.0 37.6 329 3-434 321-681 (794)
63 KOG1111 N-acetylglucosaminyltr 100.0 3.2E-29 6.9E-34 248.7 20.7 347 16-474 12-368 (426)
64 cd04949 GT1_gtfA_like This fam 100.0 1.1E-27 2.3E-32 246.1 29.9 266 100-463 98-370 (372)
65 PHA01630 putative group 1 glyc 100.0 4.9E-26 1.1E-30 232.8 28.6 229 126-463 68-322 (331)
66 PRK00726 murG undecaprenyldiph 99.9 1.1E-24 2.5E-29 223.4 32.5 323 5-453 2-339 (357)
67 cd03785 GT1_MurG MurG is an N- 99.9 1E-24 2.2E-29 222.2 31.1 307 23-453 18-339 (350)
68 cd04950 GT1_like_1 Glycosyltra 99.9 6E-24 1.3E-28 220.3 35.4 356 1-466 1-366 (373)
69 TIGR01133 murG undecaprenyldip 99.9 4.6E-24 9.9E-29 217.2 31.3 303 23-453 19-336 (348)
70 PRK05749 3-deoxy-D-manno-octul 99.9 1.1E-23 2.3E-28 221.8 34.0 262 100-453 123-403 (425)
71 PHA01633 putative glycosyl tra 99.9 3.7E-23 8E-28 211.0 27.1 252 107-463 51-331 (335)
72 PRK13609 diacylglycerol glucos 99.9 2E-21 4.3E-26 201.4 29.2 251 99-462 102-362 (380)
73 PRK09814 beta-1,6-galactofuran 99.9 1.6E-21 3.4E-26 199.5 26.2 241 100-456 63-316 (333)
74 cd03793 GT1_Glycogen_synthase_ 99.9 4.7E-21 1E-25 204.6 30.7 325 100-466 147-581 (590)
75 PF00534 Glycos_transf_1: Glyc 99.9 2.9E-22 6.4E-27 183.8 16.8 156 262-451 13-171 (172)
76 cd03788 GT1_TPS Trehalose-6-Ph 99.9 4.4E-21 9.6E-26 204.6 26.2 270 100-459 130-449 (460)
77 PLN02605 monogalactosyldiacylg 99.9 4E-20 8.7E-25 192.4 28.6 264 99-471 98-377 (382)
78 TIGR02400 trehalose_OtsA alpha 99.9 3.1E-19 6.7E-24 189.9 31.8 263 100-452 126-437 (456)
79 PRK13608 diacylglycerol glucos 99.9 4.5E-19 9.8E-24 185.3 28.8 258 100-472 103-371 (391)
80 cd01635 Glycosyltransferase_GT 99.8 2.7E-19 5.9E-24 167.9 24.2 119 269-418 109-229 (229)
81 PRK00025 lpxB lipid-A-disaccha 99.8 6.9E-19 1.5E-23 182.0 28.3 246 100-451 84-354 (380)
82 TIGR00236 wecB UDP-N-acetylglu 99.8 8.9E-19 1.9E-23 180.7 27.0 255 100-451 85-347 (365)
83 KOG1387 Glycosyltransferase [C 99.8 3.2E-18 7E-23 169.6 28.8 292 100-472 149-462 (465)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 7E-19 1.5E-23 180.3 22.3 247 100-446 87-345 (363)
85 PLN03063 alpha,alpha-trehalose 99.8 3.3E-17 7.2E-22 184.7 30.3 281 100-471 146-476 (797)
86 COG0297 GlgA Glycogen synthase 99.8 3.1E-16 6.8E-21 166.6 35.6 314 100-475 129-480 (487)
87 KOG0853 Glycosyltransferase [C 99.8 4.1E-17 8.8E-22 171.5 24.7 378 3-461 34-457 (495)
88 COG0438 RfaG Glycosyltransfera 99.8 6.6E-16 1.4E-20 150.6 30.5 286 102-473 84-377 (381)
89 PRK14501 putative bifunctional 99.7 1.2E-15 2.6E-20 171.4 28.1 271 100-462 132-453 (726)
90 PF13692 Glyco_trans_1_4: Glyc 99.7 4.1E-17 9E-22 143.8 12.0 130 265-433 3-134 (135)
91 TIGR00215 lpxB lipid-A-disacch 99.7 7E-15 1.5E-19 153.6 27.9 314 23-452 23-365 (385)
92 TIGR03713 acc_sec_asp1 accesso 99.6 1.8E-14 3.9E-19 155.6 20.1 159 265-463 320-513 (519)
93 TIGR02398 gluc_glyc_Psyn gluco 99.6 2.1E-12 4.5E-17 137.9 28.4 136 265-434 286-448 (487)
94 COG0707 MurG UDP-N-acetylgluco 99.5 1.2E-10 2.6E-15 120.3 32.5 115 322-453 212-339 (357)
95 PF13579 Glyco_trans_4_4: Glyc 99.4 8.7E-13 1.9E-17 117.4 11.0 152 20-200 6-160 (160)
96 PLN03064 alpha,alpha-trehalose 99.4 2.4E-10 5.3E-15 129.7 31.9 269 100-458 230-548 (934)
97 PRK12446 undecaprenyldiphospho 99.4 3.8E-10 8.3E-15 116.7 30.6 302 16-442 9-329 (352)
98 PF13439 Glyco_transf_4: Glyco 99.4 7.1E-12 1.5E-16 113.5 14.8 168 10-206 3-177 (177)
99 TIGR03492 conserved hypothetic 99.3 1.6E-09 3.5E-14 113.8 29.0 251 100-449 92-375 (396)
100 PF05693 Glycogen_syn: Glycoge 99.3 7.2E-10 1.6E-14 118.9 23.9 265 163-461 213-571 (633)
101 TIGR02094 more_P_ylases alpha- 99.2 1.4E-08 3E-13 111.6 31.1 182 259-469 385-598 (601)
102 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 1.6E-08 3.5E-13 105.1 29.5 239 100-433 92-338 (365)
103 PF09314 DUF1972: Domain of un 99.2 4.2E-09 9.1E-14 98.9 20.7 175 5-200 2-183 (185)
104 PF13524 Glyco_trans_1_2: Glyc 99.1 3.1E-10 6.7E-15 94.1 9.8 89 371-466 2-91 (92)
105 COG1519 KdtA 3-deoxy-D-manno-o 99.1 1.8E-07 3.8E-12 96.9 32.0 319 13-452 57-400 (419)
106 TIGR02919 accessory Sec system 99.1 3E-09 6.6E-14 112.8 18.8 123 280-445 291-418 (438)
107 PF13528 Glyco_trans_1_3: Glyc 99.0 6.3E-08 1.4E-12 97.7 22.6 117 262-431 191-317 (318)
108 PF13477 Glyco_trans_4_2: Glyc 99.0 1.6E-08 3.4E-13 89.6 15.1 129 18-179 10-139 (139)
109 cd03784 GT1_Gtf_like This fami 98.9 3.4E-07 7.4E-12 95.5 25.3 76 347-433 288-371 (401)
110 COG0763 LpxB Lipid A disacchar 98.9 6.9E-07 1.5E-11 91.6 24.1 327 10-452 6-358 (381)
111 TIGR01426 MGT glycosyltransfer 98.9 2.9E-06 6.3E-11 88.6 28.7 106 324-449 257-370 (392)
112 TIGR03590 PseG pseudaminic aci 98.8 6.8E-07 1.5E-11 89.6 21.6 99 264-405 171-271 (279)
113 PF02684 LpxB: Lipid-A-disacch 98.8 2.3E-06 5E-11 89.0 24.6 311 10-434 3-340 (373)
114 cd04299 GT1_Glycogen_Phosphory 98.7 2.5E-06 5.4E-11 96.0 25.1 188 259-473 474-691 (778)
115 PF02350 Epimerase_2: UDP-N-ac 98.5 2E-05 4.3E-10 81.5 23.0 239 100-433 66-317 (346)
116 TIGR00661 MJ1255 conserved hyp 98.5 5E-05 1.1E-09 77.4 25.4 78 347-433 229-313 (321)
117 PF13844 Glyco_transf_41: Glyc 98.5 2.4E-06 5.1E-11 90.8 14.9 180 253-471 275-465 (468)
118 PF00982 Glyco_transf_20: Glyc 98.4 0.00026 5.7E-09 76.1 29.4 150 265-445 277-448 (474)
119 PRK01021 lpxB lipid-A-disaccha 98.4 8.8E-05 1.9E-09 81.0 25.6 245 100-452 309-585 (608)
120 PRK10117 trehalose-6-phosphate 98.4 0.00019 4.1E-09 76.8 26.8 163 265-464 256-449 (474)
121 COG4641 Uncharacterized protei 98.4 3.4E-05 7.4E-10 79.0 20.0 120 347-474 237-360 (373)
122 COG0381 WecB UDP-N-acetylgluco 98.3 0.00014 3.1E-09 75.0 23.5 258 100-453 91-356 (383)
123 COG3914 Spy Predicted O-linked 98.3 0.00028 6.2E-09 75.6 25.4 182 256-476 423-617 (620)
124 PLN02205 alpha,alpha-trehalose 98.3 0.00072 1.6E-08 77.6 30.3 166 265-467 340-550 (854)
125 COG0380 OtsA Trehalose-6-phosp 98.3 0.0013 2.9E-08 70.3 29.0 169 264-465 282-476 (486)
126 PHA03392 egt ecdysteroid UDP-g 98.2 0.001 2.2E-08 72.4 27.7 87 347-448 346-442 (507)
127 PLN02208 glycosyltransferase f 98.2 0.018 3.9E-07 61.7 35.6 115 347-474 311-438 (442)
128 PF04007 DUF354: Protein of un 98.1 0.00091 2E-08 68.8 24.3 72 349-433 233-309 (335)
129 PRK02797 4-alpha-L-fucosyltran 98.1 0.001 2.2E-08 67.0 22.8 226 100-414 38-271 (322)
130 PLN02448 UDP-glycosyltransfera 98.0 0.027 5.8E-07 60.6 33.9 95 347-453 323-431 (459)
131 PF04464 Glyphos_transf: CDP-G 98.0 0.00038 8.2E-09 72.2 17.9 220 124-434 96-336 (369)
132 COG1819 Glycosyl transferases, 97.9 0.0017 3.7E-08 68.7 21.1 159 259-475 233-400 (406)
133 PF07429 Glyco_transf_56: 4-al 97.8 0.0075 1.6E-07 61.7 22.7 245 100-433 77-332 (360)
134 COG4671 Predicted glycosyl tra 97.8 0.0028 6.1E-08 64.6 19.4 101 324-434 253-365 (400)
135 TIGR02195 heptsyl_trn_II lipop 97.6 0.0099 2.1E-07 60.7 21.3 107 260-404 171-280 (334)
136 PF08323 Glyco_transf_5: Starc 97.4 0.00045 9.7E-09 68.0 8.3 87 100-189 132-233 (245)
137 PLN02173 UDP-glucosyl transfer 97.4 0.27 5.9E-06 52.8 33.3 92 347-452 317-421 (449)
138 PLN03007 UDP-glucosyltransfera 97.4 0.3 6.6E-06 52.8 36.5 91 347-451 345-452 (482)
139 PLN00414 glycosyltransferase f 97.3 0.31 6.8E-06 52.3 37.0 103 336-453 304-418 (446)
140 PRK10422 lipopolysaccharide co 97.3 0.14 3E-06 52.9 25.6 72 322-402 215-289 (352)
141 PRK10017 colanic acid biosynth 97.2 0.49 1.1E-05 50.5 28.4 86 356-452 316-407 (426)
142 TIGR02201 heptsyl_trn_III lipo 97.1 0.21 4.7E-06 51.1 24.2 73 322-403 213-288 (344)
143 COG1817 Uncharacterized protei 97.1 0.092 2E-06 53.0 20.0 276 24-433 19-313 (346)
144 PF04101 Glyco_tran_28_C: Glyc 97.1 2.2E-05 4.8E-10 72.1 -5.3 88 347-448 55-154 (167)
145 PRK10916 ADP-heptose:LPS hepto 97.1 0.085 1.8E-06 54.3 20.7 72 322-402 213-288 (348)
146 PRK14089 ipid-A-disaccharide s 97.1 0.0078 1.7E-07 62.3 12.9 92 264-401 168-261 (347)
147 COG0859 RfaF ADP-heptose:LPS h 96.9 0.17 3.6E-06 52.1 21.2 103 263-404 175-280 (334)
148 TIGR02193 heptsyl_trn_I lipopo 96.9 0.21 4.5E-06 50.6 21.7 101 262-402 178-281 (319)
149 PLN02562 UDP-glycosyltransfera 96.7 1.2 2.6E-05 47.8 33.9 79 347-434 328-413 (448)
150 KOG3742 Glycogen synthase [Car 96.6 0.037 8.1E-07 58.0 13.4 95 336-433 456-577 (692)
151 PLN02764 glycosyltransferase f 96.5 0.073 1.6E-06 57.1 15.7 94 348-453 318-423 (453)
152 PLN02670 transferase, transfer 96.4 0.099 2.1E-06 56.5 16.2 111 349-473 341-463 (472)
153 COG3660 Predicted nucleoside-d 96.4 1.1 2.3E-05 44.5 21.5 112 260-402 158-273 (329)
154 PF12000 Glyco_trans_4_3: Gkyc 96.4 0.096 2.1E-06 48.8 13.8 163 32-205 2-170 (171)
155 PLN00164 glucosyltransferase; 96.1 0.25 5.4E-06 53.5 17.1 94 348-453 340-447 (480)
156 PF00862 Sucrose_synth: Sucros 95.9 0.23 4.9E-06 53.4 14.8 141 35-180 327-477 (550)
157 PLN03004 UDP-glycosyltransfera 95.7 0.24 5.3E-06 53.2 14.5 79 347-434 334-424 (451)
158 PF00201 UDPGT: UDP-glucoronos 95.7 0.14 3.1E-06 55.1 13.0 79 347-434 323-409 (500)
159 PLN02167 UDP-glycosyltransfera 95.6 0.19 4.1E-06 54.3 13.6 78 348-434 341-434 (475)
160 PLN02210 UDP-glucosyl transfer 95.6 0.26 5.6E-06 53.0 14.5 91 348-452 325-428 (456)
161 PF06258 Mito_fiss_Elm1: Mitoc 95.6 2.4 5.2E-05 43.3 20.7 75 323-404 183-259 (311)
162 PLN02410 UDP-glucoronosyl/UDP- 95.5 0.28 6.1E-06 52.7 14.3 92 347-452 324-423 (451)
163 PLN02534 UDP-glycosyltransfera 95.4 5.2 0.00011 43.5 38.2 117 347-476 344-487 (491)
164 TIGR03609 S_layer_CsaB polysac 95.4 3.4 7.4E-05 41.4 22.0 60 332-402 217-277 (298)
165 COG0058 GlgP Glucan phosphoryl 95.3 0.23 5.1E-06 55.8 13.2 135 261-420 485-630 (750)
166 cd03789 GT1_LPS_heptosyltransf 94.9 0.16 3.4E-06 50.5 9.6 76 322-406 153-229 (279)
167 PLN02555 limonoid glucosyltran 94.8 0.81 1.8E-05 49.6 15.4 91 347-453 337-443 (480)
168 PF10087 DUF2325: Uncharacteri 94.7 0.1 2.2E-06 43.7 6.5 84 325-409 2-90 (97)
169 PLN02554 UDP-glycosyltransfera 94.6 0.71 1.5E-05 50.0 14.5 78 347-433 342-439 (481)
170 PLN02863 UDP-glucoronosyl/UDP- 94.4 1.4 3E-05 47.8 16.0 78 347-433 343-432 (477)
171 PF08660 Alg14: Oligosaccharid 94.3 1.5 3.2E-05 40.8 14.0 62 100-185 91-160 (170)
172 PLN03015 UDP-glucosyl transfer 94.0 1.2 2.6E-05 48.1 14.4 93 349-453 337-442 (470)
173 PF01075 Glyco_transf_9: Glyco 93.8 0.18 3.8E-06 48.9 7.2 106 261-404 103-212 (247)
174 PF11997 DUF3492: Domain of un 93.8 0.74 1.6E-05 46.0 11.5 91 98-192 169-265 (268)
175 PRK14986 glycogen phosphorylas 93.4 0.42 9E-06 54.5 10.0 145 259-426 539-702 (815)
176 cd04300 GT1_Glycogen_Phosphory 92.4 0.72 1.6E-05 52.6 10.0 145 259-426 526-689 (797)
177 PLN02207 UDP-glycosyltransfera 92.4 4.7 0.0001 43.6 16.0 78 347-433 332-425 (468)
178 PLN02152 indole-3-acetate beta 92.1 3.2 6.9E-05 44.7 14.2 78 347-433 327-416 (455)
179 PF04230 PS_pyruv_trans: Polys 92.0 11 0.00025 35.7 19.2 48 347-402 237-284 (286)
180 PRK10964 ADP-heptose:LPS hepto 92.0 1.1 2.5E-05 45.4 10.3 72 322-404 210-282 (322)
181 PF05159 Capsule_synth: Capsul 91.8 2 4.4E-05 42.4 11.7 72 320-404 153-228 (269)
182 TIGR02093 P_ylase glycogen/sta 91.7 0.59 1.3E-05 53.1 8.3 145 259-426 523-686 (794)
183 PF00343 Phosphorylase: Carboh 91.3 4.7 0.0001 45.6 14.7 143 259-424 440-601 (713)
184 COG3980 spsG Spore coat polysa 91.2 1.7 3.8E-05 43.5 10.0 103 326-447 190-302 (318)
185 PRK14985 maltodextrin phosphor 90.9 0.66 1.4E-05 52.7 7.7 145 259-426 525-688 (798)
186 PF08288 PIGA: PIGA (GPI ancho 90.5 1.1 2.5E-05 37.0 6.7 73 53-137 13-85 (90)
187 KOG1192 UDP-glucuronosyl and U 90.1 3 6.6E-05 44.7 11.9 79 347-433 335-421 (496)
188 PLN02992 coniferyl-alcohol glu 89.9 0.9 2E-05 49.2 7.5 79 347-434 338-427 (481)
189 COG2327 WcaK Polysaccharide py 87.6 40 0.00088 35.5 31.8 107 326-444 244-357 (385)
190 KOG4626 O-linked N-acetylgluco 86.0 15 0.00032 40.9 13.4 159 254-452 750-918 (966)
191 COG4370 Uncharacterized protei 84.0 3.6 7.9E-05 41.7 7.3 175 263-478 225-412 (412)
192 KOG1021 Acetylglucosaminyltran 84.0 12 0.00026 40.5 12.0 122 323-451 291-424 (464)
193 PF03016 Exostosin: Exostosin 83.0 1.6 3.4E-05 43.5 4.5 58 358-418 227-287 (302)
194 PF04413 Glycos_transf_N: 3-De 82.2 16 0.00034 34.4 10.7 82 100-199 94-179 (186)
195 KOG3349 Predicted glycosyltran 81.8 15 0.00033 33.6 9.7 99 266-400 6-106 (170)
196 COG0373 HemA Glutamyl-tRNA red 78.7 71 0.0015 34.0 15.1 87 322-409 178-280 (414)
197 PF03033 Glyco_transf_28: Glyc 78.2 3.2 6.9E-05 36.1 4.3 37 22-62 16-52 (139)
198 PF06925 MGDG_synth: Monogalac 78.2 10 0.00022 34.7 7.9 69 99-193 87-158 (169)
199 PF15024 Glyco_transf_18: Glyc 77.0 4.8 0.0001 44.1 6.0 80 349-434 324-430 (559)
200 COG1703 ArgK Putative periplas 75.2 37 0.0008 34.6 11.2 115 5-139 49-178 (323)
201 PF11071 DUF2872: Protein of u 70.4 19 0.00041 32.0 7.0 67 362-432 67-140 (141)
202 TIGR00715 precor6x_red precorr 70.0 22 0.00048 35.3 8.4 99 323-432 153-255 (256)
203 TIGR02069 cyanophycinase cyano 64.4 38 0.00083 33.5 8.8 84 322-405 28-127 (250)
204 PF01113 DapB_N: Dihydrodipico 63.2 9.3 0.0002 33.3 3.8 78 323-406 1-103 (124)
205 PRK05282 (alpha)-aspartyl dipe 60.6 61 0.0013 31.7 9.3 67 335-405 51-124 (233)
206 PF10686 DUF2493: Protein of u 60.3 75 0.0016 25.1 8.1 62 264-355 4-67 (71)
207 PF12038 DUF3524: Domain of un 58.1 53 0.0012 30.5 7.8 78 100-189 58-137 (168)
208 COG0569 TrkA K+ transport syst 56.7 61 0.0013 31.3 8.6 120 24-193 15-135 (225)
209 TIGR01035 hemA glutamyl-tRNA r 56.4 1.6E+02 0.0035 31.3 12.4 88 320-408 178-282 (417)
210 TIGR03646 YtoQ_fam YtoQ family 55.1 31 0.00067 30.8 5.5 102 325-432 3-143 (144)
211 PRK13940 glutamyl-tRNA reducta 53.4 1.7E+02 0.0037 31.1 12.0 84 320-408 179-278 (414)
212 COG2247 LytB Putative cell wal 52.3 69 0.0015 32.9 8.2 100 294-402 48-163 (337)
213 PRK00676 hemA glutamyl-tRNA re 52.2 2E+02 0.0044 29.8 11.9 108 320-429 172-288 (338)
214 PRK05647 purN phosphoribosylgl 52.0 82 0.0018 30.0 8.4 55 5-62 2-58 (200)
215 PF00389 2-Hacid_dh: D-isomer 51.8 95 0.0021 26.9 8.3 87 334-428 8-101 (133)
216 KOG0832 Mitochondrial/chloropl 50.6 2.1E+02 0.0045 28.1 10.8 37 369-409 175-212 (251)
217 COG0111 SerA Phosphoglycerate 50.4 63 0.0014 33.3 7.9 81 322-404 142-236 (324)
218 PF13905 Thioredoxin_8: Thiore 50.1 86 0.0019 25.0 7.3 79 263-370 2-80 (95)
219 PF02826 2-Hacid_dh_C: D-isome 49.4 74 0.0016 29.4 7.6 84 320-404 34-130 (178)
220 PRK00045 hemA glutamyl-tRNA re 48.6 2.6E+02 0.0057 29.7 12.6 88 320-408 180-285 (423)
221 PF01012 ETF: Electron transfe 48.3 1.7E+02 0.0036 26.4 9.6 97 23-137 22-124 (164)
222 cd03129 GAT1_Peptidase_E_like 48.1 1.1E+02 0.0024 28.9 8.8 84 322-405 29-125 (210)
223 TIGR01007 eps_fam capsular exo 48.0 2.1E+02 0.0045 26.6 10.6 40 2-42 15-55 (204)
224 PF10093 DUF2331: Uncharacteri 47.0 77 0.0017 33.3 7.9 72 322-403 210-291 (374)
225 COG2120 Uncharacterized protei 45.6 1.6E+02 0.0035 28.6 9.7 19 25-44 31-49 (237)
226 PF03308 ArgK: ArgK protein; 45.1 73 0.0016 31.9 7.0 111 8-138 33-155 (266)
227 cd03145 GAT1_cyanophycinase Ty 43.7 1.6E+02 0.0035 28.2 9.2 86 320-405 29-128 (217)
228 COG2099 CobK Precorrin-6x redu 43.6 2.5E+02 0.0054 28.0 10.4 66 337-403 162-231 (257)
229 PRK10494 hypothetical protein; 43.3 1.6E+02 0.0035 29.2 9.3 79 320-404 119-211 (259)
230 COG1887 TagB Putative glycosyl 43.0 4.3E+02 0.0092 27.9 14.9 82 358-451 277-367 (388)
231 PF11440 AGT: DNA alpha-glucos 42.9 2.9E+02 0.0063 28.1 10.7 137 267-433 186-352 (355)
232 COG5017 Uncharacterized conser 42.7 1.8E+02 0.0039 26.4 8.3 54 349-410 48-102 (161)
233 PRK06027 purU formyltetrahydro 41.5 1.4E+02 0.003 30.1 8.6 56 3-62 88-144 (286)
234 PF02571 CbiJ: Precorrin-6x re 41.4 74 0.0016 31.4 6.5 79 343-428 166-247 (249)
235 PRK08410 2-hydroxyacid dehydro 41.3 1E+02 0.0022 31.5 7.7 94 321-415 144-252 (311)
236 PF00852 Glyco_transf_10: Glyc 40.7 2.4E+02 0.0051 29.2 10.5 106 334-447 191-307 (349)
237 TIGR00262 trpA tryptophan synt 40.1 3.8E+02 0.0082 26.5 11.5 87 334-420 129-228 (256)
238 TIGR02536 eut_hyp ethanolamine 40.1 88 0.0019 30.1 6.6 68 323-402 21-98 (207)
239 PTZ00182 3-methyl-2-oxobutanat 39.9 1.1E+02 0.0023 32.0 7.7 106 323-431 234-354 (355)
240 PRK08057 cobalt-precorrin-6x r 39.5 92 0.002 30.8 6.9 77 349-432 171-247 (248)
241 PF00290 Trp_syntA: Tryptophan 38.5 4.1E+02 0.0089 26.4 11.5 114 333-452 128-254 (259)
242 PRK06932 glycerate dehydrogena 38.4 95 0.0021 31.7 7.0 81 322-404 147-236 (314)
243 PLN02928 oxidoreductase family 38.2 95 0.0021 32.2 7.1 83 321-404 158-265 (347)
244 PLN00203 glutamyl-tRNA reducta 38.2 5.8E+02 0.013 28.1 15.1 86 322-408 266-374 (519)
245 COG0489 Mrp ATPases involved i 38.0 2.7E+02 0.0057 27.7 10.0 28 13-41 67-94 (265)
246 TIGR03029 EpsG chain length de 37.5 3.3E+02 0.0072 26.6 10.6 37 100-136 211-247 (274)
247 cd05312 NAD_bind_1_malic_enz N 37.5 2.1E+02 0.0045 28.9 9.0 39 360-400 96-138 (279)
248 KOG3339 Predicted glycosyltran 37.1 2.6E+02 0.0057 26.6 8.9 34 10-43 43-76 (211)
249 PRK09358 adenosine deaminase; 37.1 4.6E+02 0.01 26.6 15.8 114 322-451 197-318 (340)
250 cd01320 ADA Adenosine deaminas 37.1 3.2E+02 0.007 27.4 10.7 114 322-451 188-309 (325)
251 PLN02683 pyruvate dehydrogenas 35.6 1.3E+02 0.0028 31.4 7.6 105 324-433 230-351 (356)
252 PRK06487 glycerate dehydrogena 35.6 1.1E+02 0.0025 31.1 7.1 83 322-405 148-237 (317)
253 PRK06849 hypothetical protein; 35.2 1.4E+02 0.003 31.1 7.8 38 1-43 1-38 (389)
254 PF10649 DUF2478: Protein of u 35.1 63 0.0014 29.8 4.5 39 363-401 88-130 (159)
255 cd01080 NAD_bind_m-THF_DH_Cycl 34.9 1E+02 0.0023 28.4 6.1 52 320-374 42-94 (168)
256 PLN02735 carbamoyl-phosphate s 34.3 9.1E+02 0.02 29.3 15.2 42 4-45 574-620 (1102)
257 PF04392 ABC_sub_bind: ABC tra 34.1 4.8E+02 0.01 25.8 11.9 94 335-434 150-251 (294)
258 PRK06015 keto-hydroxyglutarate 34.0 2E+02 0.0043 27.6 7.9 67 320-398 53-121 (201)
259 TIGR00639 PurN phosphoribosylg 33.8 3.1E+02 0.0068 25.8 9.3 53 6-62 2-57 (190)
260 PRK13011 formyltetrahydrofolat 33.8 2.7E+02 0.0059 28.1 9.3 56 3-62 88-144 (286)
261 PF12738 PTCB-BRCT: twin BRCT 33.5 1.2E+02 0.0026 22.6 5.2 60 324-401 2-62 (63)
262 KOG0069 Glyoxylate/hydroxypyru 33.4 91 0.002 32.3 5.8 83 322-405 162-257 (336)
263 PRK04020 rps2P 30S ribosomal p 33.1 3.7E+02 0.0081 25.8 9.6 82 323-409 68-153 (204)
264 TIGR00288 conserved hypothetic 33.1 1.8E+02 0.0038 26.9 7.1 67 277-374 89-155 (160)
265 PRK05583 ribosomal protein L7A 32.9 1.7E+02 0.0036 24.9 6.5 63 322-391 33-98 (104)
266 PRK15438 erythronate-4-phospha 32.8 1.2E+02 0.0027 31.9 6.9 83 320-404 114-210 (378)
267 PF02585 PIG-L: GlcNAc-PI de-N 32.2 97 0.0021 26.6 5.2 18 25-43 18-35 (128)
268 TIGR01658 EYA-cons_domain eyes 32.2 99 0.0021 30.7 5.5 44 319-369 227-270 (274)
269 PF00289 CPSase_L_chain: Carba 32.1 73 0.0016 27.3 4.2 79 324-406 4-86 (110)
270 PRK11519 tyrosine kinase; Prov 32.1 3.6E+02 0.0079 30.8 11.1 32 100-132 634-665 (719)
271 KOG1050 Trehalose-6-phosphate 31.8 8.6E+02 0.019 28.1 22.1 142 265-434 277-440 (732)
272 PRK09212 pyruvate dehydrogenas 31.7 2.4E+02 0.0052 29.0 8.7 108 323-433 202-324 (327)
273 cd01408 SIRT1 SIRT1: Eukaryoti 31.6 2.3E+02 0.0049 27.6 8.2 77 347-425 152-232 (235)
274 cd03146 GAT1_Peptidase_E Type 31.6 1.9E+02 0.0042 27.5 7.6 82 322-405 31-125 (212)
275 TIGR03837 efp_adjacent_2 conse 30.7 3.7E+02 0.008 28.3 9.8 47 348-403 243-289 (371)
276 PRK13234 nifH nitrogenase redu 30.7 53 0.0011 33.1 3.7 42 1-43 1-42 (295)
277 cd02071 MM_CoA_mut_B12_BD meth 30.6 2.4E+02 0.0052 24.2 7.4 43 320-366 79-121 (122)
278 COG2085 Predicted dinucleotide 29.8 1.5E+02 0.0033 28.7 6.3 34 5-44 2-35 (211)
279 PRK08306 dipicolinate synthase 29.3 1.7E+02 0.0036 29.6 7.0 76 323-401 3-101 (296)
280 PRK13010 purU formyltetrahydro 29.0 2.3E+02 0.005 28.6 7.9 56 3-62 92-148 (289)
281 PF01081 Aldolase: KDPG and KH 29.0 1.2E+02 0.0026 28.9 5.5 68 320-399 57-126 (196)
282 cd05014 SIS_Kpsf KpsF-like pro 28.8 1.9E+02 0.004 24.5 6.4 83 324-409 2-89 (128)
283 PTZ00408 NAD-dependent deacety 28.8 4.4E+02 0.0094 25.9 9.6 79 347-428 151-231 (242)
284 PRK15409 bifunctional glyoxyla 28.7 1.6E+02 0.0035 30.2 6.8 82 321-404 144-239 (323)
285 PRK05718 keto-hydroxyglutarate 28.4 2.8E+02 0.0062 26.6 8.1 69 320-400 64-134 (212)
286 PRK13398 3-deoxy-7-phosphohept 28.1 5.5E+02 0.012 25.6 10.3 62 335-402 81-142 (266)
287 PRK00048 dihydrodipicolinate r 28.0 1.6E+02 0.0034 29.1 6.4 76 323-403 2-93 (257)
288 PRK13243 glyoxylate reductase; 27.8 1.7E+02 0.0037 30.0 6.9 83 321-404 149-243 (333)
289 TIGR00655 PurU formyltetrahydr 27.6 3.8E+02 0.0082 26.9 9.1 56 3-62 83-139 (280)
290 PRK10834 vancomycin high tempe 26.9 4.1E+02 0.0089 26.2 8.9 77 320-402 80-169 (239)
291 PF00533 BRCT: BRCA1 C Terminu 26.7 1.8E+02 0.004 21.9 5.5 67 319-401 5-72 (78)
292 PRK05447 1-deoxy-D-xylulose 5- 26.5 2.9E+02 0.0063 29.2 8.3 74 323-401 28-122 (385)
293 COG2984 ABC-type uncharacteriz 26.5 3E+02 0.0066 28.3 8.1 109 320-434 156-279 (322)
294 PTZ00254 40S ribosomal protein 26.3 2E+02 0.0044 28.5 6.7 80 324-409 73-157 (249)
295 PRK10017 colanic acid biosynth 26.0 7.1E+02 0.015 26.6 11.4 43 359-401 109-155 (426)
296 PRK14138 NAD-dependent deacety 25.7 4.4E+02 0.0096 25.8 9.1 79 347-430 155-239 (244)
297 PRK02261 methylaspartate mutas 25.5 4E+02 0.0086 23.6 8.0 46 320-367 83-132 (137)
298 PRK05331 putative phosphate ac 25.2 7.7E+02 0.017 25.4 13.7 52 273-354 9-62 (334)
299 COG0496 SurE Predicted acid ph 25.1 3.1E+02 0.0066 27.3 7.7 51 10-62 4-57 (252)
300 PF11238 DUF3039: Protein of u 24.9 54 0.0012 25.0 1.8 15 386-400 16-30 (58)
301 COG1927 Mtd Coenzyme F420-depe 24.8 6.5E+02 0.014 24.5 12.6 37 383-419 75-115 (277)
302 cd03174 DRE_TIM_metallolyase D 24.6 6.3E+02 0.014 24.2 12.7 119 277-431 112-245 (265)
303 cd00762 NAD_bind_malic_enz NAD 24.5 3.5E+02 0.0075 27.0 8.0 40 360-401 97-140 (254)
304 PF01975 SurE: Survival protei 24.3 1.2E+02 0.0026 28.8 4.6 28 17-45 12-39 (196)
305 TIGR01012 Sa_S2_E_A ribosomal 24.2 1.8E+02 0.0039 27.7 5.8 82 323-409 62-147 (196)
306 PRK15062 hydrogenase isoenzyme 23.9 2.9E+02 0.0063 29.0 7.5 81 320-402 128-220 (364)
307 PRK05380 pyrG CTP synthetase; 23.8 4E+02 0.0086 29.5 8.9 85 320-404 286-382 (533)
308 PRK06718 precorrin-2 dehydroge 23.7 6.2E+02 0.014 23.9 10.9 107 322-433 10-141 (202)
309 TIGR01182 eda Entner-Doudoroff 23.7 3.7E+02 0.0081 25.7 7.8 67 320-398 57-125 (204)
310 PRK06091 membrane protein FdrA 23.6 3.8E+02 0.0081 29.8 8.7 105 325-433 196-317 (555)
311 TIGR00557 pdxA 4-hydroxythreon 22.3 3E+02 0.0066 28.3 7.3 104 321-432 194-317 (320)
312 TIGR02706 P_butyryltrans phosp 22.2 8.1E+02 0.018 24.6 11.6 49 320-374 36-94 (294)
313 TIGR00036 dapB dihydrodipicoli 22.0 2.1E+02 0.0046 28.3 6.1 42 360-404 61-102 (266)
314 PF13407 Peripla_BP_4: Peripla 22.0 6.6E+02 0.014 23.5 10.7 93 335-433 18-120 (257)
315 PF02441 Flavoprotein: Flavopr 21.9 1.2E+02 0.0026 26.4 3.8 36 5-42 1-36 (129)
316 PF00551 Formyl_trans_N: Formy 21.9 4.6E+02 0.0099 24.1 8.0 10 100-109 78-87 (181)
317 PRK00994 F420-dependent methyl 21.8 6.6E+02 0.014 24.9 9.0 38 6-43 4-41 (277)
318 COG1519 KdtA 3-deoxy-D-manno-o 21.8 5.7E+02 0.012 27.4 9.3 104 259-402 45-154 (419)
319 COG0299 PurN Folate-dependent 21.7 6.9E+02 0.015 24.0 9.0 107 6-137 2-110 (200)
320 CHL00200 trpA tryptophan synth 21.5 8.1E+02 0.017 24.3 14.8 88 333-420 132-232 (263)
321 PRK03743 pdxA 4-hydroxythreoni 21.5 2.8E+02 0.0061 28.7 6.9 105 321-433 201-325 (332)
322 COG0300 DltE Short-chain dehyd 21.5 2.7E+02 0.0058 27.9 6.6 44 18-62 15-62 (265)
323 cd06167 LabA_like LabA_like pr 21.3 4E+02 0.0087 23.2 7.3 46 320-369 99-144 (149)
324 cd00027 BRCT Breast Cancer Sup 21.3 3.1E+02 0.0067 19.5 6.6 62 323-401 2-65 (72)
325 PLN02331 phosphoribosylglycina 21.2 5.2E+02 0.011 24.7 8.4 104 6-136 1-108 (207)
326 PF09949 DUF2183: Uncharacteri 21.2 1.9E+02 0.0041 24.4 4.7 25 320-344 62-88 (100)
327 COG1647 Esterase/lipase [Gener 20.9 7.1E+02 0.015 24.5 9.0 39 6-45 16-54 (243)
328 PF06449 DUF1082: Mitochondria 20.6 20 0.00044 26.0 -1.1 29 3-31 6-34 (51)
329 TIGR00730 conserved hypothetic 20.6 4.1E+02 0.0089 24.7 7.4 51 348-404 80-136 (178)
330 COG0788 PurU Formyltetrahydrof 20.5 4E+02 0.0087 26.8 7.4 55 3-62 89-145 (287)
331 TIGR00075 hypD hydrogenase exp 20.4 5E+02 0.011 27.3 8.4 82 320-403 134-227 (369)
332 PRK06843 inosine 5-monophospha 20.3 1.6E+02 0.0034 31.4 4.9 69 365-433 10-89 (404)
333 PF04127 DFP: DNA / pantothena 20.3 3.9E+02 0.0085 25.1 7.2 39 18-62 28-67 (185)
334 TIGR00337 PyrG CTP synthase. C 20.1 7E+02 0.015 27.6 9.9 84 321-404 288-382 (525)
335 PF03575 Peptidase_S51: Peptid 20.0 1.4E+02 0.0031 26.7 4.1 69 335-405 3-80 (154)
No 1
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-69 Score=527.21 Aligned_cols=431 Identities=54% Similarity=0.902 Sum_probs=385.4
Q ss_pred CCCcceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHH
Q 011690 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (479)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
|++++++||||+||+||||||+|||.+||++ |++|+++++.++.+...+..+++|+||.++..+ .....++.+..
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~----~~~~~p~~~~l 83 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP----FLQGGPRVLFL 83 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCChHHHhcCCceEEEeCCCCc----ccCCCchhhhh
Confidence 4678999999999999999999999999997 999999999999888888899999999999432 23333455668
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhh-hhhhhcCCCchhHHHHHHH
Q 011690 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYT-LLSLSLGRRSHFVSIYRCF 159 (479)
Q Consensus 81 l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (479)
..+.+.|+..++|.++. ...+|+|+++|||++++++++.++...+|+++++|||+++|+ .+.++.+..++++++.+++
T Consensus 84 ~lKvf~Qfl~Ll~aL~~-~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~ 162 (444)
T KOG2941|consen 84 PLKVFWQFLSLLWALFV-LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWL 162 (444)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHH
Confidence 88999999999999988 589999999999999999999999999999999999999998 6778888899999999999
Q ss_pred hHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC-eEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccc
Q 011690 160 SVLRIEKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 238 (479)
Q Consensus 160 ~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~-~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
|+++.+.||..+|||++|++.+.++||+ ++.|+|+.|++ +|++.+++++++.+++....++. + -.
T Consensus 163 -----E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps--~~~~l~~~H~lf~~l~~d~~~f~------a-r~ 228 (444)
T KOG2941|consen 163 -----EKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS--KPTPLDEQHELFMKLAGDHSPFR------A-RE 228 (444)
T ss_pred -----HHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC--CCCchhHHHHHHhhhccccchhh------h-cc
Confidence 9999999999999999999999999997 69999999776 78888899999998875432210 0 02
Q ss_pred cCCcccccchhcccc-ccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcc
Q 011690 239 MEGQKADETIFTSLA-GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQ 317 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
.+++...++.|+... .+.+...+.+|.+++++++|+|++++..|++|+..+.+.. ..++
T Consensus 229 ~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~--------------------~~~~ 288 (444)
T KOG2941|consen 229 PQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQL--------------------YDKT 288 (444)
T ss_pred cccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhh--------------------hhcc
Confidence 334444467786653 3778888999999999999999999999999999876542 1235
Q ss_pred cCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 318 YLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 318 ~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
...|++..+|+|+||.+|.|.+.++++++++|.+..+|++.||++.++++||++||.|++|+|.++|||+++++.||+||
T Consensus 289 ~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPv 368 (444)
T KOG2941|consen 289 HNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 368 (444)
T ss_pred CCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCce
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 011690 398 CAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 472 (479)
Q Consensus 398 Ias~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 472 (479)
||.+..|+.|++++++||++|+|.++||++|..++++||++.+.+++++.|+++ .+..+|+++|++++.|+++.
T Consensus 369 cA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e-~~e~RW~~~W~~~~~P~~~~ 442 (444)
T KOG2941|consen 369 CAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLRE-EQELRWDESWERTALPLVMD 442 (444)
T ss_pred eeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHH-HHhhhHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999 46999999999999998764
No 2
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.2e-49 Score=418.44 Aligned_cols=412 Identities=54% Similarity=0.915 Sum_probs=314.7
Q ss_pred CCcceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHH
Q 011690 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (479)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l 81 (479)
.++||+|+++.+++|...|+.+++..|+++ ||+|+|++.....+..+.....||+++.++ ..+ .......+.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~~~~~~~ 76 (415)
T cd03816 1 PKRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPHDEILSNPNITIHPLP--PPP-QRLNKLPFLLFAP 76 (415)
T ss_pred CCccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCCHHHhcCCCEEEEECC--CCc-cccccchHHHHHH
Confidence 368999999999999999999999999996 999999998765444333456789999998 322 1122233444454
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhH
Q 011690 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV 161 (479)
Q Consensus 82 ~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
...+.+++.+++.++.+ .+||+||+|+|+.+++..++.++++..++|+|++||++.++......+..+.+.++++++
T Consensus 77 ~~~~~~~~~~~~~l~~~-~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (415)
T cd03816 77 LKVLWQFFSLLWLLYKL-RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWY-- 153 (415)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHH--
Confidence 55555556666655543 689999999988888887888888888999999999976544443333344445566666
Q ss_pred HHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC---eEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccc
Q 011690 162 LRIEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 238 (479)
Q Consensus 162 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
|+.+++.||.++++|+.+++.+.+ ++. ++.+|||++...|.|.+.......+......
T Consensus 154 ---e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~~~f~p~~~~~~~~~~~~~~~~--------------- 214 (415)
T cd03816 154 ---EKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPPEQFRPLPLEEKHELFLKLAKT--------------- 214 (415)
T ss_pred ---HHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCHHHceeCcHHHHHHHHHhcccc---------------
Confidence 999999999999999999999877 454 3899999976677776532222111100000
Q ss_pred cCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCccc
Q 011690 239 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (479)
........+..+..++++.+++++||+.+.||++.||+|+..+.+...+ ..
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~---------------------~~ 265 (415)
T cd03816 215 --------FLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAAT---------------------GP 265 (415)
T ss_pred --------ccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcc---------------------cc
Confidence 0000000011123345566888999999999999999999998752000 01
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEE
Q 011690 319 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 319 ~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVI 398 (479)
..|+++|+|+|+|+.++.+++.+++++++++.|.+.|++.++++.+|++||++++|+.++.++++|++++||||||+|||
T Consensus 266 ~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI 345 (415)
T cd03816 266 KLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC 345 (415)
T ss_pred cCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEE
Confidence 25789999999999999999999999998877775459999999999999999987666677899999999999999999
Q ss_pred EecCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 011690 399 AVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 470 (479)
Q Consensus 399 as~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 470 (479)
+|+.++.+|+++++.+|++++|++++|++|.+++++.+ +++.+++|++++++. ...+|+.+|++++-|++
T Consensus 346 ~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~-~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~ 415 (415)
T cd03816 346 ALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFP-NRGKLNSLKKGAQEE-SELRWDENWDRVVGPLF 415 (415)
T ss_pred EeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHh-hhcCHHHHHHHHhhhhC
Confidence 99999999999999999999999999999999999310 188999999999994 48999999999998863
No 3
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.3e-47 Score=394.04 Aligned_cols=370 Identities=79% Similarity=1.254 Sum_probs=288.5
Q ss_pred CCCcceEEEEEecCCCCChhHHHHHHHHHhhCCC-cEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHH
Q 011690 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSL-EVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVL 79 (479)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~La~~~G~-eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~ 79 (479)
|+++++++|++++++|..+||+.++..++++ |+ +|+|+|+.+..+..+.....|+++++++. +......+.....+.
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~-~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~~~~~~~~~~~~~ 78 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQ-ASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRLLQRLPRVLYALA 78 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhc-CCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cccccccccchHHHH
Confidence 8999999999999999999999999999997 65 89999987765554555667899999983 111112333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHH
Q 011690 80 LLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCF 159 (479)
Q Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
++....+.+..++|.+..+..+||+||+|+|+.+....++.++++..+.|+|+++|++.+..............++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 158 (371)
T PLN02275 79 LLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWY 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHH
Confidence 45555556666777665556899999999988777777788888888999999999975443333322334445566666
Q ss_pred hHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccccc
Q 011690 160 SVLRIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGM 239 (479)
Q Consensus 160 ~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
|+.+++.+|.++++|+.+++.+.+.++.++.+|||++.+.|.|.... ..
T Consensus 159 -----e~~~~~~ad~ii~~S~~~~~~l~~~~g~~i~vi~n~~~~~f~~~~~~--~~------------------------ 207 (371)
T PLN02275 159 -----ERHYGKMADGHLCVTKAMQHELDQNWGIRATVLYDQPPEFFRPASLE--IR------------------------ 207 (371)
T ss_pred -----HHHHHhhCCEEEECCHHHHHHHHHhcCCCeEEECCCCHHHcCcCCch--hc------------------------
Confidence 99999999999999999999998877888889999965666654321 00
Q ss_pred CCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccC
Q 011690 240 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
..++.+.+++++||+.++||++.+++|+..+..++....+.++ +.+.....
T Consensus 208 -------------------~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~----------~~~~~~~~ 258 (371)
T PLN02275 208 -------------------LRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESD----------SASGKQSL 258 (371)
T ss_pred -------------------ccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcccccc----------cccccccc
Confidence 1123445788999999999999999999988654332212111 00011123
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
.|+++|+|+|+|+.+++++++++++++++|.|.+.|++.++++.+|++||++|+|+.++.++++|++++||||||+|||+
T Consensus 259 ~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa 338 (371)
T PLN02275 259 YPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA 338 (371)
T ss_pred CCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE
Confidence 68899999999999999999999999988998876699999999999999999876555678999999999999999999
Q ss_pred ecCccchhccccCccEEEeCCHHHHHHHHHHHH
Q 011690 400 VSYSCIEELVKVDKNGLLFSSSSELADQLLMLF 432 (479)
Q Consensus 400 s~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~ 432 (479)
++.|+.+|+++++.+|++++++++||++|.+|+
T Consensus 339 ~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 339 VSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred ecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 999999999999999999999999999998874
No 4
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3.7e-38 Score=329.59 Aligned_cols=380 Identities=17% Similarity=0.188 Sum_probs=262.3
Q ss_pred EEEEE---ecCCCCC-hhHHHHHHHHHhhCCCcEEEEecCCCCCc-----------ccccCCCCeEEEEeecCCCCCCCC
Q 011690 7 ACVVV---LGDLGRS-PRMQYQALSLARQMSLEVDVVAYGGSKPH-----------AAILEHPSIHIHTMTQWPTIPRGL 71 (479)
Q Consensus 7 ~~i~~---~~~~g~~-~r~~~~a~~La~~~G~eV~Vv~~~~~~~~-----------~~~~~~~gi~i~~~~~~~~~~~~~ 71 (479)
++++. .++.|+. .++...+..|+++ ||+|+|+|..+..+. ......+|+++++++.+. ....
T Consensus 3 Ilii~~~~~P~~~g~~~~~~~l~~~L~~~-G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~--~~~~ 79 (412)
T PRK10307 3 ILVYGINYAPELTGIGKYTGEMAEWLAAR-GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYV--PKQP 79 (412)
T ss_pred EEEEecCCCCCccchhhhHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccC--CCCc
Confidence 45554 3444432 3455667888885 999999997643211 011224689999998321 1111
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhh-hhhhcCCC
Q 011690 72 PKVLKPVLLLLKPLIQFFMLLWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL-LSLSLGRR 149 (479)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~-~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~-~~~~~~~~ 149 (479)
... ..+.....-.+..+..+... ..+||+||+|+|+.. ....+.++++..++|+|++.|++.... ......+.
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~-~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~ 154 (412)
T PRK10307 80 SGL----KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLF-CAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKG 154 (412)
T ss_pred cHH----HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHH-HHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccC
Confidence 111 11111111111111111111 268999999996533 334556677788999999999865322 11111112
Q ss_pred chhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhccc
Q 011690 150 SHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILH 225 (479)
Q Consensus 150 ~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~ 225 (479)
+.+.++.+++ |+++++.||.++++|+.+++.+.+. +. ++.+|||| +.+.|.+........+...
T Consensus 155 ~~~~~~~~~~-----~~~~~~~ad~ii~~S~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~------ 222 (412)
T PRK10307 155 GKVARLATAF-----ERSLLRRFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSEVARFQPVADADVDALRAQ------ 222 (412)
T ss_pred cHHHHHHHHH-----HHHHHhhCCEEEecCHHHHHHHHHc-CCCcccEEEECCCcCHhhcCCCCccchHHHHHH------
Confidence 2333344444 8888899999999999999988765 54 38899999 7666765432111222222
Q ss_pred CCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchh
Q 011690 226 QPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNE 305 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~ 305 (479)
+++++++ .+++|+|++.+.||++.|++|++.+.+
T Consensus 223 -------------------------------~~~~~~~-~~i~~~G~l~~~kg~~~li~a~~~l~~-------------- 256 (412)
T PRK10307 223 -------------------------------LGLPDGK-KIVLYSGNIGEKQGLELVIDAARRLRD-------------- 256 (412)
T ss_pred -------------------------------cCCCCCC-EEEEEcCccccccCHHHHHHHHHHhcc--------------
Confidence 2333333 589999999999999999999998743
Q ss_pred hhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC-CCCCCc
Q 011690 306 EVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLP 384 (479)
Q Consensus 306 ~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~~e~~p 384 (479)
.|+++|+|+|+|+..+.+++.++++++++|.|+|. ++.++++.+|++||++++|+... .+..+|
T Consensus 257 --------------~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~-~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p 321 (412)
T PRK10307 257 --------------RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPL-QPYDRLPALLKMADCHLLPQKAGAADLVLP 321 (412)
T ss_pred --------------CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCC-CCHHHHHHHHHhcCEeEEeeccCcccccCc
Confidence 57899999999999999999999999988999996 99999999999999999995433 223379
Q ss_pred HHHHHHHhCCCcEEEecCcc--chhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchH
Q 011690 385 MKVVDMFGCGLPVCAVSYSC--IEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWA 459 (479)
Q Consensus 385 ~~llEama~G~PVIas~~~~--~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~ 459 (479)
.+++|||+||+|||+|+.++ ..|+++ .+|+++ +|+++|+++|.++++ +++.++.|++++++.. ..++|+
T Consensus 322 ~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~----~~~~~~~~~~~a~~~~~~~fs~~ 395 (412)
T PRK10307 322 SKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALAR----QALLRPKLGTVAREYAERTLDKE 395 (412)
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcCHH
Confidence 99999999999999999776 468886 589998 579999999999998 5889999999998854 467887
Q ss_pred HHHHHHHHHHHHHHH
Q 011690 460 TEWEEHAKPLITEVI 474 (479)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (479)
...++ +..++.+++
T Consensus 396 ~~~~~-~~~~~~~~~ 409 (412)
T PRK10307 396 NVLRQ-FIADIRGLV 409 (412)
T ss_pred HHHHH-HHHHHHHHh
Confidence 76654 444444443
No 5
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.9e-37 Score=330.17 Aligned_cols=347 Identities=19% Similarity=0.245 Sum_probs=247.9
Q ss_pred hHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHH---HHHHHHHHHHHHHHHHHHH
Q 011690 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKP---VLLLLKPLIQFFMLLWFLC 96 (479)
Q Consensus 20 r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~l~ 96 (479)
++...+..|.++ ||+|+|+|.....+. ...++++..++....+. ....... ...+.+.+.+
T Consensus 79 ~~~~l~~~L~~~-G~eV~vlt~~~~~~~----~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~--------- 142 (465)
T PLN02871 79 RFQNFIRYLREM-GDEVLVVTTDEGVPQ----EFHGAKVIGSWSFPCPF--YQKVPLSLALSPRIISEVAR--------- 142 (465)
T ss_pred HHHHHHHHHHHC-CCeEEEEecCCCCCc----cccCceeeccCCcCCcc--CCCceeeccCCHHHHHHHHh---------
Confidence 444556666664 999999997654321 22466665544211111 1110000 0112222222
Q ss_pred hhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEE
Q 011690 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCL 176 (479)
Q Consensus 97 ~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 176 (479)
.+||+||+|+|.. ..+.+.++++..++|+|+++|+....... .. ....+.+.... +++.+.+.+|.++
T Consensus 143 ---~kpDiIh~~~~~~--~~~~~~~~ak~~~ip~V~~~h~~~~~~~~-~~-~~~~~~~~~~~-----~~r~~~~~ad~ii 210 (465)
T PLN02871 143 ---FKPDLIHASSPGI--MVFGALFYAKLLCVPLVMSYHTHVPVYIP-RY-TFSWLVKPMWD-----IIRFLHRAADLTL 210 (465)
T ss_pred ---CCCCEEEECCCch--hHHHHHHHHHHhCCCEEEEEecCchhhhh-cc-cchhhHHHHHH-----HHHHHHhhCCEEE
Confidence 7999999998632 23344455667899999999975421111 00 01111111122 3677788999999
Q ss_pred EeCHHHHHHHHHhhC---CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccc
Q 011690 177 CVTQAMQHELAQNWG---IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 252 (479)
Q Consensus 177 ~vS~~~~~~l~~~~~---~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
++|+.+++.+.+... .++.++||| |.+.|.|.... .....++.
T Consensus 211 ~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~--~~~~~~~~------------------------------- 257 (465)
T PLN02871 211 VTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRS--EEMRARLS------------------------------- 257 (465)
T ss_pred ECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCcccc--HHHHHHhc-------------------------------
Confidence 999999999887642 238899999 77788765321 11111111
Q ss_pred cccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC
Q 011690 253 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~ 332 (479)
...+++ .+|+++||+.+.||++.++++++. .|+++|+|+|+|+
T Consensus 258 -----~~~~~~-~~i~~vGrl~~~K~~~~li~a~~~-------------------------------~~~~~l~ivG~G~ 300 (465)
T PLN02871 258 -----GGEPEK-PLIVYVGRLGAEKNLDFLKRVMER-------------------------------LPGARLAFVGDGP 300 (465)
T ss_pred -----CCCCCC-eEEEEeCCCchhhhHHHHHHHHHh-------------------------------CCCcEEEEEeCCh
Confidence 012334 478999999999999999998865 4689999999999
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcccc-
Q 011690 333 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV- 411 (479)
Q Consensus 333 ~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~- 411 (479)
+.+.+++.+++ .+|.|+|+ ++.++++.+|++||++|+| |..|++|++++|||+||+|||+++.+++.|++++
T Consensus 301 ~~~~l~~~~~~---~~V~f~G~-v~~~ev~~~~~~aDv~V~p---S~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~ 373 (465)
T PLN02871 301 YREELEKMFAG---TPTVFTGM-LQGDELSQAYASGDVFVMP---SESETLGFVVLEAMASGVPVVAARAGGIPDIIPPD 373 (465)
T ss_pred HHHHHHHHhcc---CCeEEecc-CCHHHHHHHHHHCCEEEEC---CcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcC
Confidence 98888887764 36999997 9999999999999999998 5668899999999999999999999999999999
Q ss_pred --CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHh
Q 011690 412 --DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 475 (479)
Q Consensus 412 --~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 475 (479)
+.+|+++ +|+++++++|.++++ +++.++.|++++++....++|+...++..+..+.+++.
T Consensus 374 ~~~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~ 437 (465)
T PLN02871 374 QEGKTGFLYTPGDVDDCVEKLETLLA----DPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIW 437 (465)
T ss_pred CCCCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 579999999999999 58999999999988777888888877766666666654
No 6
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.6e-37 Score=319.65 Aligned_cols=360 Identities=18% Similarity=0.155 Sum_probs=255.1
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCc-ccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-c
Q 011690 22 QYQALSLARQMSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK-I 99 (479)
Q Consensus 22 ~~~a~~La~~~G~eV~Vv~~~~~~~~-~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~-~ 99 (479)
...+..|++ +||+|+|+|....... ......+|+++++++. .+...... ......+..+.. .+++.++.+ .
T Consensus 27 ~~la~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~ 99 (405)
T TIGR03449 27 LETATELAR-RGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVA--GPYEGLDK-EDLPTQLCAFTG---GVLRAEARHEP 99 (405)
T ss_pred HHHHHHHhh-CCCEEEEEecccCCCCCCccccCCCcEEEEecC--CCcccCCH-HHHHHHHHHHHH---HHHHHHhhccC
Confidence 344555666 5999999997643221 1222357899999872 21111111 011111111111 112222222 2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCC-CchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
.+||+||+|. ....+++.++++..++|+|+++|+... +....... ..+.....++. |+.+.+.+|.++++
T Consensus 100 ~~~Diih~h~---~~~~~~~~~~~~~~~~p~v~t~h~~~~-~~~~~~~~~~~~~~~~~~~~-----e~~~~~~~d~vi~~ 170 (405)
T TIGR03449 100 GYYDLIHSHY---WLSGQVGWLLRDRWGVPLVHTAHTLAA-VKNAALADGDTPEPEARRIG-----EQQLVDNADRLIAN 170 (405)
T ss_pred CCCCeEEech---HHHHHHHHHHHHhcCCCEEEeccchHH-HHHHhccCCCCCchHHHHHH-----HHHHHHhcCeEEEC
Confidence 4799999998 444556667777889999999998642 11100000 01111122233 77778899999999
Q ss_pred CHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 179 TQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
|+...+.+.+.++.+ +.+|||| +.+.|.+.+.. ....
T Consensus 171 s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~---~~~~------------------------------------ 211 (405)
T TIGR03449 171 TDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRA---TERA------------------------------------ 211 (405)
T ss_pred CHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHH---HHHH------------------------------------
Confidence 999888888777653 8899999 76677654311 1111
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCC--EEEEEEec--
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR--LLFIITGK-- 330 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~l~IvG~-- 330 (479)
++++++++ .+|+++|++.+.||++.+++|+..+.++ .|+ ++|+|+|+
T Consensus 212 -~~~~~~~~-~~i~~~G~l~~~K~~~~li~a~~~l~~~---------------------------~~~~~~~l~ivG~~~ 262 (405)
T TIGR03449 212 -RLGLPLDT-KVVAFVGRIQPLKAPDVLLRAVAELLDR---------------------------DPDRNLRVIVVGGPS 262 (405)
T ss_pred -hcCCCCCC-cEEEEecCCCcccCHHHHHHHHHHHHhh---------------------------CCCcceEEEEEeCCC
Confidence 12333444 4899999999999999999999998764 565 99999995
Q ss_pred --C-CChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch
Q 011690 331 --G-PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 331 --G-~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~ 406 (479)
| +..+.+++.++++++ ++|.|+|. ++.+++..+|+.||++++| |..|++|++++|||+||+|||+++.++.+
T Consensus 263 ~~g~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~l~~ad~~v~p---s~~E~~g~~~lEAma~G~Pvi~~~~~~~~ 338 (405)
T TIGR03449 263 GSGLATPDALIELAAELGIADRVRFLPP-RPPEELVHVYRAADVVAVP---SYNESFGLVAMEAQACGTPVVAARVGGLP 338 (405)
T ss_pred CCcchHHHHHHHHHHHcCCCceEEECCC-CCHHHHHHHHHhCCEEEEC---CCCCCcChHHHHHHHcCCCEEEecCCCcH
Confidence 4 556789999999998 68999997 9999999999999999998 56788999999999999999999999999
Q ss_pred hccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 011690 407 ELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 474 (479)
Q Consensus 407 e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 474 (479)
|++.++.+|+++ .|+++++++|.++++ +++.++++++++++....++|+..-++ ...++++++
T Consensus 339 e~i~~~~~g~~~~~~d~~~la~~i~~~l~----~~~~~~~~~~~~~~~~~~fsw~~~~~~-~~~~y~~~~ 403 (405)
T TIGR03449 339 VAVADGETGLLVDGHDPADWADALARLLD----DPRTRIRMGAAAVEHAAGFSWAATADG-LLSSYRDAL 403 (405)
T ss_pred hhhccCCceEECCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHh
Confidence 999999999999 479999999999998 588899999998886667788766654 345555543
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=6.4e-37 Score=319.29 Aligned_cols=344 Identities=13% Similarity=0.100 Sum_probs=242.2
Q ss_pred HHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011690 21 MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIP-RGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (479)
Q Consensus 21 ~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~ 99 (479)
+...+..|+++ ||+|+|+|..............+++++++|...... .........+..+.+.+. .
T Consensus 20 ~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~------------~ 86 (398)
T cd03796 20 IYQLSQCLIKR-GHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILI------------R 86 (398)
T ss_pred HHHHHHHHHHc-CCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHHHHHHH------------h
Confidence 34456677775 999999997643222122335689999988321110 001111111111222221 2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+|++... ....+.++++..++|+|++.|+... . .........++ .++..+.+|.++++|
T Consensus 87 ~~~DiIh~~~~~~~-~~~~~~~~~~~~~~~~v~t~h~~~~-~-------~~~~~~~~~~~-----~~~~~~~~d~ii~~s 152 (398)
T cd03796 87 ERITIVHGHQAFSA-LAHEALLHARTMGLKTVFTDHSLFG-F-------ADASSIHTNKL-----LRFSLADVDHVICVS 152 (398)
T ss_pred cCCCEEEECCCCch-HHHHHHHHhhhcCCcEEEEeccccc-c-------cchhhHHhhHH-----HHHhhccCCEEEEec
Confidence 79999999995432 2233455667788999999998531 0 00001112223 566678899999999
Q ss_pred HHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 180 QAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 180 ~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
+.+.+.+....+. ++.+|||| |.+.|.+....
T Consensus 153 ~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------------------------------------------- 188 (398)
T cd03796 153 HTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------------------------------------------- 188 (398)
T ss_pred HhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc--------------------------------------------
Confidence 9998865444344 28899999 65566554310
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChH
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 335 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~ 335 (479)
. +++..+++++||+.+.||++.+++|++.+.++ .|+++|+|+|+|+..+
T Consensus 189 ---~-~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~ 237 (398)
T cd03796 189 ---R-DNDKITIVVISRLVYRKGIDLLVGIIPEICKK---------------------------HPNVRFIIGGDGPKRI 237 (398)
T ss_pred ---C-CCCceEEEEEeccchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEeCCchHH
Confidence 0 12235899999999999999999999998765 7899999999999999
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCcc
Q 011690 336 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 414 (479)
Q Consensus 336 ~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~ 414 (479)
.+++.++++++ ++|.|+|. ++.+++..+|++||++++| |..|++|++++|||+||+|||+|+.++.+|++.++..
T Consensus 238 ~l~~~~~~~~l~~~v~~~G~-~~~~~~~~~l~~ad~~v~p---S~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~ 313 (398)
T cd03796 238 LLEEMREKYNLQDRVELLGA-VPHERVRDVLVQGHIFLNT---SLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMI 313 (398)
T ss_pred HHHHHHHHhCCCCeEEEeCC-CCHHHHHHHHHhCCEEEeC---ChhhccCHHHHHHHHcCCCEEECCCCCchhheeCCce
Confidence 99999999999 67999996 9999999999999999998 5668999999999999999999999999999987654
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhhhhchHHHHHHHHHHHHHHHHh
Q 011690 415 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWEEHAKPLITEVIS 475 (479)
Q Consensus 415 G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~ 475 (479)
++...|+++++++|.+++++ ......++.++++ ....++|+...++ ...+++++++
T Consensus 314 ~~~~~~~~~l~~~l~~~l~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~-~~~~y~~l~~ 370 (398)
T cd03796 314 LLAEPDVESIVRKLEEAISI----LRTGKHDPWSFHNRVKKMYSWEDVAKR-TEKVYDRILQ 370 (398)
T ss_pred eecCCCHHHHHHHHHHHHhC----hhhhhhHHHHHHHHHHhhCCHHHHHHH-HHHHHHHHhc
Confidence 44447899999999999985 3333334333333 2357888888765 4466666664
No 8
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.6e-36 Score=310.49 Aligned_cols=362 Identities=18% Similarity=0.179 Sum_probs=253.5
Q ss_pred cceEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHH
Q 011690 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (479)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~-a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~ 82 (479)
+++++|+...+.|+..++... +..|.+ .||+++|++..+...........|+++++++ ..+. .....+..+.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~--~~~~----~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPA-DRYRHAVVALTEVSAFRKRIQRPDVAFYALH--KQPG----KDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccc-cccceEEEEcCCCChhHHHHHhcCceEEEeC--CCCC----CChHHHHHHH
Confidence 567777777666554443332 333334 4899999986543333233345688998887 2111 1122223333
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcE-EEEecCchhhhhhhhcCCCchhHHHHHHHhH
Q 011690 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV 161 (479)
Q Consensus 83 ~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~-ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
+.+.+ .+||+||+|++. . ..+.++++..++|. +.+.|.... .. .......+.++
T Consensus 75 ~~l~~------------~~~Divh~~~~~---~-~~~~~~~~~~~~~~~i~~~h~~~~--~~-----~~~~~~~~~~~-- 129 (374)
T TIGR03088 75 RLLRQ------------LRPDIVHTRNLA---A-LEAQLPAALAGVPARIHGEHGRDV--FD-----LDGSNWKYRWL-- 129 (374)
T ss_pred HHHHH------------hCCCEEEEcchh---H-HHHHHHHHhcCCCeEEEeecCccc--cc-----chhhHHHHHHH--
Confidence 33333 799999999842 2 22334455566665 334554321 00 00000112223
Q ss_pred HHHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccc
Q 011690 162 LRIEKYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNA 237 (479)
Q Consensus 162 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
++.+.+.+|.++++|+.+++++.+.++.+ +.+|||| +.+.|.+..... ......
T Consensus 130 ---~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~-~~~~~~------------------ 187 (374)
T TIGR03088 130 ---RRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDR-SPILPP------------------ 187 (374)
T ss_pred ---HHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccch-hhhhHh------------------
Confidence 66667789999999999999998877654 7899999 777776653211 111000
Q ss_pred ccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcc
Q 011690 238 GMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQ 317 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
...++++.+++++||+.+.||++.+++|+..+.++..
T Consensus 188 --------------------~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~----------------------- 224 (374)
T TIGR03088 188 --------------------DFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP----------------------- 224 (374)
T ss_pred --------------------hcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCc-----------------------
Confidence 0112334689999999999999999999999876510
Q ss_pred cCCCCEEEEEEecCCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCc
Q 011690 318 YLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 396 (479)
Q Consensus 318 ~~~p~~~l~IvG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~P 396 (479)
...++++|+++|+|+..+.+++.++++++ ++|.|.|. .+|+..+|++||++|+| |..|+||++++|||+||+|
T Consensus 225 ~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~p---S~~Eg~~~~~lEAma~G~P 298 (374)
T TIGR03088 225 EGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGE---RDDVPALMQALDLFVLP---SLAEGISNTILEAMASGLP 298 (374)
T ss_pred ccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCC---cCCHHHHHHhcCEEEec---cccccCchHHHHHHHcCCC
Confidence 01347999999999999999999999999 67999997 88999999999999998 6678999999999999999
Q ss_pred EEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHHHHHHHHHHH
Q 011690 397 VCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEV 473 (479)
Q Consensus 397 VIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~ 473 (479)
||+|+.++.+|+++++.+|+++ +|++++++++.++++ +++.++.++.++++.. ..++|+...++ ...+++++
T Consensus 299 vv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~-~~~~y~~~ 373 (374)
T TIGR03088 299 VIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVS----DPAARRAHGAAGRARAEQQFSINAMVAA-YAGLYDQL 373 (374)
T ss_pred EEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHh
Confidence 9999999999999999999999 579999999999998 5888888988888754 57788776554 44555443
No 9
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=9.4e-36 Score=307.33 Aligned_cols=367 Identities=19% Similarity=0.216 Sum_probs=248.9
Q ss_pred ceEEEEEecCCCCChhH-HHHHHHHHhhCCCcEEEEecCCCCCcc-cccCCCCeEEEEeecCCCCCCCCCchhHHHHHHH
Q 011690 5 GRACVVVLGDLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHA-AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (479)
Q Consensus 5 ~~~~i~~~~~~g~~~r~-~~~a~~La~~~G~eV~Vv~~~~~~~~~-~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~ 82 (479)
|++++.-....|++.++ ...|..|+++ ||+|+|+|........ ......++.++..+.+ .+. .....+..+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~ 75 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDW-LPR----SIFGRFHILC 75 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhC-CCeEEEEcCCCCchhcchhccCCeeEEEEEeEE-Ecc----hhhHhHHHHH
Confidence 55554433334554444 5667888875 9999999975432111 1111223555555411 111 1111122222
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHH
Q 011690 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVL 162 (479)
Q Consensus 83 ~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
..+......++....+..++|+||+++ +..... +.+...+.|+|+++|... ..... ..+...+++++. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~Dvi~~~~---~~~~~~--~~~~~~~~~~i~~~h~~~-~~~~~---~~~~~~~~~~~~-~~ 145 (392)
T cd03805 76 AYLRMLYLALYLLLLPDEKYDVFIVDQ---VSACVP--LLKLFSPSKILFYCHFPD-QLLAQ---RGSLLKRLYRKP-FD 145 (392)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEcC---cchHHH--HHHHhcCCcEEEEEecCh-HHhcC---CCcHHHHHHHHH-HH
Confidence 223322222222123447999999987 322221 223334478888888432 11111 112222222221 34
Q ss_pred HHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe----EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccc
Q 011690 163 RIEKYYGKMANGCLCVTQAMQHELAQNWGIK----ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNA 237 (479)
Q Consensus 163 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~----~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
.+|+..++.+|.++++|+.+++.+.+.++.. ..+|||+ +.+.|.+........
T Consensus 146 ~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~---------------------- 203 (392)
T cd03805 146 WLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPG---------------------- 203 (392)
T ss_pred HHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCccccccccc----------------------
Confidence 4588899999999999999999888766432 3589999 766676543211000
Q ss_pred ccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcc
Q 011690 238 GMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQ 317 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
..... +...+++++||+.+.||++.+++|+..+.++
T Consensus 204 ------------------~~~~~-~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~------------------------- 239 (392)
T cd03805 204 ------------------LLIPK-SGKKTFLSINRFERKKNIALAIEAFAILKDK------------------------- 239 (392)
T ss_pred ------------------ccccC-CCceEEEEEeeecccCChHHHHHHHHHHHhh-------------------------
Confidence 00122 2335899999999999999999999999875
Q ss_pred cCC---CCEEEEEEecCCCh--------HHHHHHHHH-cCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCc
Q 011690 318 YLY---PRLLFIITGKGPDK--------ESYEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLP 384 (479)
Q Consensus 318 ~~~---p~~~l~IvG~G~~~--------~~l~~~~~~-~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p 384 (479)
. |+++|+++|+|+.+ +.+++.+++ +++ ++|.|+|. ++.+++..+|++||++++| |..|+||
T Consensus 240 --~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~-~~~~~~~~~l~~ad~~l~~---s~~E~~g 313 (392)
T cd03805 240 --LAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS-ISDSQKELLLSSARALLYT---PSNEHFG 313 (392)
T ss_pred --cccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC-CChHHHHHHHhhCeEEEEC---CCcCCCC
Confidence 5 79999999998753 678888998 888 78999997 9999999999999999998 6678899
Q ss_pred HHHHHHHhCCCcEEEecCccchhccccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHH
Q 011690 385 MKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEW 462 (479)
Q Consensus 385 ~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~ 462 (479)
++++|||+||+|||+++.++..|++.++.+|+++ .|+++++++|.++++ +++.++++++++++.. ..++|+...
T Consensus 314 ~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s~~~~~ 389 (392)
T cd03805 314 IVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAN----DPDLADRMGAAGRKRVKEKFSTEAFA 389 (392)
T ss_pred chHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 9999999999999999999999999999999998 679999999999999 5788899999888743 456665544
Q ss_pred H
Q 011690 463 E 463 (479)
Q Consensus 463 ~ 463 (479)
+
T Consensus 390 ~ 390 (392)
T cd03805 390 E 390 (392)
T ss_pred h
Confidence 3
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.3e-35 Score=310.99 Aligned_cols=361 Identities=19% Similarity=0.129 Sum_probs=234.6
Q ss_pred HHHHHHHhhCCC--cEEEEecCCCC-------CcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011690 23 YQALSLARQMSL--EVDVVAYGGSK-------PHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (479)
Q Consensus 23 ~~a~~La~~~G~--eV~Vv~~~~~~-------~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 93 (479)
..+..|++ .|| +|+|+|..... ........+|+++++++. .+..... ......++..+... +.
T Consensus 34 ~La~~L~~-~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~--~~~~~~~-~~~~~~~~~~~~~~----l~ 105 (439)
T TIGR02472 34 ELARALAR-RSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPF--GPRRYLR-KELLWPYLDELADN----LL 105 (439)
T ss_pred HHHHHHHh-CCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecC--CCCCCcC-hhhhhhhHHHHHHH----HH
Confidence 33555556 487 99999964221 011112257999999983 2221111 01111111111111 11
Q ss_pred HHHhhc-CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcC----CCchhHHHHHHHhHHHHHHHH
Q 011690 94 FLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG----RRSHFVSIYRCFSVLRIEKYY 168 (479)
Q Consensus 94 ~l~~~~-~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~e~~~ 168 (479)
.++.+. .+||+||+|+ ....+++.++++..++|+|+|.|+....... ... ....+.+.+........|+..
T Consensus 106 ~~~~~~~~~~DvIH~h~---~~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T TIGR02472 106 QHLRQQGHLPDLIHAHY---ADAGYVGARLSRLLGVPLIFTGHSLGREKRR-RLLAAGLKPQQIEKQYNISRRIEAEEET 181 (439)
T ss_pred HHHHHcCCCCCEEEEcc---hhHHHHHHHHHHHhCCCEEEecccccchhhh-hcccCCCChhhhhhhcchHHHHHHHHHH
Confidence 122222 3799999998 3455667777788899999999986422110 000 000111111111011247778
Q ss_pred hhcCCEEEEeCHHHHHHHHHhh-CC---eEEEecCC-CCCCCCCCChH-HHHHHHHhhhhcccCCCCccccccccccCCc
Q 011690 169 GKMANGCLCVTQAMQHELAQNW-GI---KATVLYDQ-PPEFFHPTSLE-EKHELFCRLNKILHQPLGVQDCVSNAGMEGQ 242 (479)
Q Consensus 169 ~~~ad~vi~vS~~~~~~l~~~~-~~---~~~vi~n~-~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
++.+|.++++|+.........+ ++ ++.+|||| +.+.|.|.... ....+...+.
T Consensus 182 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~--------------------- 240 (439)
T TIGR02472 182 LAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLA--------------------- 240 (439)
T ss_pred HHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHH---------------------
Confidence 8899999999976544333222 33 38899999 77778765321 1111111110
Q ss_pred ccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCC
Q 011690 243 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 322 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 322 (479)
.++..++++ +|+++||+.+.||++.||+|++.+.+. + ..++
T Consensus 241 -------------~~~~~~~~~-~i~~vGrl~~~Kg~~~li~A~~~l~~~--~-----------------------~~~~ 281 (439)
T TIGR02472 241 -------------PFLKDPEKP-PILAISRPDRRKNIPSLVEAYGRSPKL--Q-----------------------EMAN 281 (439)
T ss_pred -------------hhccccCCc-EEEEEcCCcccCCHHHHHHHHHhChhh--h-----------------------hhcc
Confidence 012234444 899999999999999999999865321 0 1244
Q ss_pred EEEEEEecCCChHH-----------HHHHHHHcCC-CcEEEecCCCCcchHHHHHHcC----CEEEEcccCCCCCCCcHH
Q 011690 323 LLFIITGKGPDKES-----------YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPMK 386 (479)
Q Consensus 323 ~~l~IvG~G~~~~~-----------l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~a----di~v~p~~~s~~e~~p~~ 386 (479)
+. +|+|+|++.+. +++.++++++ ++|.|.|. ++.++++.+|+.| |++|+| |..|+||++
T Consensus 282 l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~-~~~~~~~~~~~~a~~~~Dv~v~p---S~~E~fg~~ 356 (439)
T TIGR02472 282 LV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKH-HRPDDVPELYRLAARSRGIFVNP---ALTEPFGLT 356 (439)
T ss_pred EE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCC-CCHHHHHHHHHHHhhcCCEEecc---cccCCcccH
Confidence 44 36788875432 3445677888 78999997 9999999999987 999998 667999999
Q ss_pred HHHHHhCCCcEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 387 VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 387 llEama~G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
++||||||+|||+|+.|+++|++.++.+|+++ .|+++|+++|.++++ +++.++.|++++++.. ..++|+...+
T Consensus 357 ~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fsw~~~~~ 432 (439)
T TIGR02472 357 LLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALS----DSSQWQLWSRNGIEGVRRHYSWDAHVE 432 (439)
T ss_pred HHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999998 579999999999999 5888999999998743 4566655444
Q ss_pred H
Q 011690 464 E 464 (479)
Q Consensus 464 ~ 464 (479)
+
T Consensus 433 ~ 433 (439)
T TIGR02472 433 K 433 (439)
T ss_pred H
Confidence 3
No 11
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.9e-35 Score=297.20 Aligned_cols=351 Identities=18% Similarity=0.219 Sum_probs=246.0
Q ss_pred eEEEEEecCCCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011690 6 RACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~-~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (479)
+++++..+..|+.+++.. .+..|+++ ||+|+|+|...... .....+++.++.++....+.. ...... ...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~ 72 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSSRPFR--LDEYSPNIFFHEVEVPQYPLF---QYPPYD---LAL 72 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecCCCcc--hhhhccCeEEEEecccccchh---hcchhH---HHH
Confidence 355566777777665554 46777775 99999999754321 112234666655541111111 000000 011
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHh---cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhH
Q 011690 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL---RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV 161 (479)
Q Consensus 85 l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~---~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
... +..++ +..+||+||+|.+ .+....+.++.+. .++|+|++.|+..+.... .. ..++++
T Consensus 73 ~~~----l~~~i-~~~~~divh~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~----~~----~~~~~~-- 135 (371)
T cd04962 73 ASK----IAEVA-KRYKLDLLHVHYA--VPHAVAAYLAREILGKKDLPVVTTLHGTDITLVG----QD----PSFQPA-- 135 (371)
T ss_pred HHH----HHHHH-hcCCccEEeeccc--CCccHHHHHHHHhcCcCCCcEEEEEcCCcccccc----cc----ccchHH--
Confidence 111 11222 2279999999974 2223333333333 378999999975422111 01 111223
Q ss_pred HHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC--eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccc
Q 011690 162 LRIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 238 (479)
Q Consensus 162 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
++...+.+|.++++|+.+++.+.+.++. ++.++||+ +...|.+..... ...
T Consensus 136 ---~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~---~~~-------------------- 189 (371)
T cd04962 136 ---TRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEA---LKR-------------------- 189 (371)
T ss_pred ---HHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHH---HHH--------------------
Confidence 5666788999999999999988877543 38899999 555555443211 111
Q ss_pred cCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCccc
Q 011690 239 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 318 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (479)
.++..+++ .+++++|++.+.||++.+++|+..+.+
T Consensus 190 -----------------~~~~~~~~-~~il~~g~l~~~K~~~~li~a~~~l~~--------------------------- 224 (371)
T cd04962 190 -----------------RLGAPEGE-KVLIHISNFRPVKRIDDVIRIFAKVRK--------------------------- 224 (371)
T ss_pred -----------------hcCCCCCC-eEEEEecccccccCHHHHHHHHHHHHh---------------------------
Confidence 11233444 489999999999999999999998865
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 319 LYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 319 ~~p~~~l~IvG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
.++++|+|+|.|++.+.+++.++++++ ++|.|.|. .+++..+|+.||++|+| |..|++|++++|||+||+||
T Consensus 225 -~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~v~p---s~~E~~~~~~~EAma~g~Pv 297 (371)
T cd04962 225 -EVPARLLLVGDGPERSPAERLARELGLQDDVLFLGK---QDHVEELLSIADLFLLP---SEKESFGLAALEAMACGVPV 297 (371)
T ss_pred -cCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecC---cccHHHHHHhcCEEEeC---CCcCCCccHHHHHHHcCCCE
Confidence 245899999999999999999999988 68999998 67899999999999999 56788999999999999999
Q ss_pred EEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hhhhchHHHHHH
Q 011690 398 CAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEE 464 (479)
Q Consensus 398 Ias~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~ 464 (479)
|+|+.++..|++.++.+|+++ +|++++++++.++++ +++.+..|++++++. ...++|+...++
T Consensus 298 I~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 363 (371)
T cd04962 298 VASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE----DDELWQEFSRAARNRAAERFDSERIVPQ 363 (371)
T ss_pred EEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999 479999999999998 588999999999885 456777665543
No 12
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.8e-34 Score=301.22 Aligned_cols=271 Identities=19% Similarity=0.225 Sum_probs=210.4
Q ss_pred hcCCCcEEEEeCCCCcchHHHHHHHHH--hcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEE
Q 011690 98 KIASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGC 175 (479)
Q Consensus 98 ~~~~~DvI~~~~p~~~~~~~~~~~~~~--~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 175 (479)
+..+||+||+|.. .....+.+++. ..+.|+++++|+..... . .....++.. .+..++.+|.+
T Consensus 115 ~~~~~diihaH~~---~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~-------~-~~~~~~~~~-----~~~~~~~ad~v 178 (406)
T PRK15427 115 TPFVADVFIAHFG---PAGVTAAKLRELGVLRGKIATIFHGIDISS-------R-EVLNHYTPE-----YQQLFRRGDLM 178 (406)
T ss_pred ccCCCCEEEEcCC---hHHHHHHHHHHhCCCCCCeEEEEccccccc-------c-hhhhhhhHH-----HHHHHHhCCEE
Confidence 3468999999983 22333333433 23446788999764110 0 011111111 23344789999
Q ss_pred EEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 176 LCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 176 i~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+++|+.+++.+.+. +.+ +.++||| +.+.|.+....
T Consensus 179 v~~S~~~~~~l~~~-g~~~~ki~vi~nGvd~~~f~~~~~~---------------------------------------- 217 (406)
T PRK15427 179 LPISDLWAGRLQKM-GCPPEKIAVSRMGVDMTRFSPRPVK---------------------------------------- 217 (406)
T ss_pred EECCHHHHHHHHHc-CCCHHHEEEcCCCCCHHHcCCCccc----------------------------------------
Confidence 99999999998764 654 8899999 66666543210
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
..+.+..|+++||+.+.||++.+++|++.+.++ .++++|.|+|+|
T Consensus 218 --------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~ivG~G 262 (406)
T PRK15427 218 --------APATPLEIISVARLTEKKGLHVAIEACRQLKEQ---------------------------GVAFRYRILGIG 262 (406)
T ss_pred --------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEECc
Confidence 112345799999999999999999999999875 789999999999
Q ss_pred CChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCC-C--CCCCcHHHHHHHhCCCcEEEecCccchh
Q 011690 332 PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVVDMFGCGLPVCAVSYSCIEE 407 (479)
Q Consensus 332 ~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~--~e~~p~~llEama~G~PVIas~~~~~~e 407 (479)
+..+.+++.++++++ ++|.|+|. ++.+++.++|++||++|+|+... . .||+|++++|||+||+|||+|+.++++|
T Consensus 263 ~~~~~l~~~~~~~~l~~~V~~~G~-~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E 341 (406)
T PRK15427 263 PWERRLRTLIEQYQLEDVVEMPGF-KPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPE 341 (406)
T ss_pred hhHHHHHHHHHHcCCCCeEEEeCC-CCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchh
Confidence 999999999999999 78999995 99999999999999999995432 2 3899999999999999999999999999
Q ss_pred ccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHH
Q 011690 408 LVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 408 ~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
+++++.+|+++ +|+++++++|.++++. |++.++.|++++++.. ..++|+...++
T Consensus 342 ~v~~~~~G~lv~~~d~~~la~ai~~l~~~---d~~~~~~~~~~ar~~v~~~f~~~~~~~~ 398 (406)
T PRK15427 342 LVEADKSGWLVPENDAQALAQRLAAFSQL---DTDELAPVVKRAREKVETDFNQQVINRE 398 (406)
T ss_pred hhcCCCceEEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999 5799999999999994 4888999999998753 45666555543
No 13
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=3.5e-34 Score=321.86 Aligned_cols=385 Identities=18% Similarity=0.164 Sum_probs=255.3
Q ss_pred ChhHHHHHHHHHhh---CC--CcEEEEecCCCCCc-------c--------------cccCCCCeEEEEeecCCCCC-CC
Q 011690 18 SPRMQYQALSLARQ---MS--LEVDVVAYGGSKPH-------A--------------AILEHPSIHIHTMTQWPTIP-RG 70 (479)
Q Consensus 18 ~~r~~~~a~~La~~---~G--~eV~Vv~~~~~~~~-------~--------------~~~~~~gi~i~~~~~~~~~~-~~ 70 (479)
.||+..++..||+. +| |+|+|+|.....+. + .....+|++|+++|.+ |. ..
T Consensus 194 tGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~G--P~~~~ 271 (1050)
T TIGR02468 194 TGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFG--PRDKY 271 (1050)
T ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccC--CCCCC
Confidence 45555554444444 47 89999997643211 0 1112359999999943 33 22
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH----HHhh-----cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhh
Q 011690 71 LPKVLKPVLLLLKPLIQFFMLLWF----LCVK-----IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL 141 (479)
Q Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~----l~~~-----~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~ 141 (479)
+++. ..+.++-.+...+...+.. +..+ ...||+||.|. +.+..++..++...++|+|+|.|..+-.-
T Consensus 272 l~Ke-~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHy---w~sG~aa~~L~~~lgVP~V~T~HSLgr~K 347 (1050)
T TIGR02468 272 IPKE-ELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHY---ADAGDSAALLSGALNVPMVLTGHSLGRDK 347 (1050)
T ss_pred cCHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECc---chHHHHHHHHHHhhCCCEEEECccchhhh
Confidence 3331 1122222222222211111 0001 11499999998 77788888889999999999999876221
Q ss_pred hh-h-hcCC--Cchh---HHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhC----------------------C
Q 011690 142 LS-L-SLGR--RSHF---VSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNWG----------------------I 192 (479)
Q Consensus 142 ~~-~-~~~~--~~~~---~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~----------------------~ 192 (479)
.. + ..+. ...+ +++..+ ...|+.....||.||++|+.+++++...|+ .
T Consensus 348 ~~~ll~~g~~~~~~~~~~y~~~~R---i~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~ 424 (1050)
T TIGR02468 348 LEQLLKQGRMSKEEINSTYKIMRR---IEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGR 424 (1050)
T ss_pred hhhhcccccccccccccccchHHH---HHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhccccccccc
Confidence 10 0 0010 0000 111111 134888889999999999999987666653 1
Q ss_pred ---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEE
Q 011690 193 ---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVV 268 (479)
Q Consensus 193 ---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 268 (479)
++.||||| |.+.|.|......... ++.. ..++.. ...+... ++ .+...+++| +|+
T Consensus 425 ~~~ri~VIPpGVD~~~F~P~~~~~~~~~---~~~~------------~~~~~~---~~~~~~~-l~-r~~~~pdkp-vIL 483 (1050)
T TIGR02468 425 FMPRMAVIPPGMEFSHIVPHDGDMDGET---EGNE------------EHPAKP---DPPIWSE-IM-RFFTNPRKP-MIL 483 (1050)
T ss_pred CCCCeEEeCCCCcHHHccCCCccccchh---cccc------------cccccc---cchhhHH-HH-hhcccCCCc-EEE
Confidence 47999999 8888988642211100 0000 000000 0000000 00 112345666 899
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh-----------HHH
Q 011690 269 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----------ESY 337 (479)
Q Consensus 269 ~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~-----------~~l 337 (479)
++||+.+.||++.||+|+..+.+. ...+++. +|+|+|+.. ..+
T Consensus 484 ~VGRL~p~KGi~~LIeAf~~L~~l-------------------------~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L 537 (1050)
T TIGR02468 484 ALARPDPKKNITTLVKAFGECRPL-------------------------RELANLT-LIMGNRDDIDEMSSGSSSVLTSV 537 (1050)
T ss_pred EEcCCccccCHHHHHHHHHHhHhh-------------------------ccCCCEE-EEEecCchhhhhhccchHHHHHH
Confidence 999999999999999999998642 0235676 466877542 356
Q ss_pred HHHHHHcCC-CcEEEecCCCCcchHHHHHHcC----CEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccC
Q 011690 338 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 412 (479)
Q Consensus 338 ~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~a----di~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~ 412 (479)
++.++++++ ++|.|+|. ++.++++.+|+.| |+||+| |..|+||++++||||||+|||||+.||+.|++.++
T Consensus 538 ~~li~~lgL~g~V~FlG~-v~~edvp~lYr~Ad~s~DVFV~P---S~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g 613 (1050)
T TIGR02468 538 LKLIDKYDLYGQVAYPKH-HKQSDVPDIYRLAAKTKGVFINP---AFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVL 613 (1050)
T ss_pred HHHHHHhCCCCeEEecCC-CCHHHHHHHHHHhhhcCCeeeCC---cccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccC
Confidence 778899999 78999997 9999999999988 699998 77899999999999999999999999999999999
Q ss_pred ccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 011690 413 KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 466 (479)
Q Consensus 413 ~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 466 (479)
.+|+++ .|+++||++|.++++ +++.+++|++++++....++|+..-++++
T Consensus 614 ~nGlLVdP~D~eaLA~AL~~LL~----Dpelr~~m~~~gr~~v~~FSWe~ia~~yl 665 (1050)
T TIGR02468 614 DNGLLVDPHDQQAIADALLKLVA----DKQLWAECRQNGLKNIHLFSWPEHCKTYL 665 (1050)
T ss_pred CcEEEECCCCHHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999 479999999999999 69999999999988655565555444433
No 14
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=2.9e-34 Score=298.96 Aligned_cols=360 Identities=17% Similarity=0.160 Sum_probs=237.3
Q ss_pred ChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011690 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (479)
Q Consensus 18 ~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 97 (479)
++.....|..|+++ ||+|+|+|..+..... . |+++++++...........+..........-..++..+..+..
T Consensus 10 p~~~~~la~~L~~~-G~~v~~~~~~~~~~~~----~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T cd03818 10 PGQFRHLAPALAAQ-GHEVVFLTEPNAAPPP----G-GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRA 83 (396)
T ss_pred chhHHHHHHHHHHC-CCEEEEEecCCCCCCC----C-CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 35566789999996 9999999987753221 1 7999999833221111111111111111111222333333333
Q ss_pred hcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhh---hhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCE
Q 011690 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL---LSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANG 174 (479)
Q Consensus 98 ~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 174 (479)
+..+||+||+|.-+ ... ..+.....++|+|...|-+...- ...............+...........++.+|.
T Consensus 84 ~~~~pdvi~~h~~~--~~~--~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 159 (396)
T cd03818 84 KGFRPDVIVAHPGW--GET--LFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADA 159 (396)
T ss_pred cCCCCCEEEECCcc--chh--hhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCE
Confidence 44689999999832 111 11222335688877554221000 000000001110001101000113456678999
Q ss_pred EEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccc
Q 011690 175 CLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 253 (479)
Q Consensus 175 vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
+|++|+.+++.+.+.++.++.+|||| +.+.|.|..... ... .
T Consensus 160 vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~-~~~----~-------------------------------- 202 (396)
T cd03818 160 GVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQAR-LRL----P-------------------------------- 202 (396)
T ss_pred EECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhh-hcc----c--------------------------------
Confidence 99999999998877766679999999 777887764211 110 0
Q ss_pred ccccccCCCCCeEEEEEec-CCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC
Q 011690 254 GIDVFLKPNRPALVVSSTS-WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 332 (479)
Q Consensus 254 ~~~~~~~~~~~~~i~~~g~-~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~ 332 (479)
....+.++++ +++++|| +.+.||++.+++|+..+.++ .|+++|+|+|++.
T Consensus 203 -~~~~~~~~~~-~i~~vgR~l~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~lvivG~~~ 253 (396)
T cd03818 203 -NGRVLTPGDE-VITFVARNLEPYRGFHVFMRALPRLLRA---------------------------RPDARVVIVGGDG 253 (396)
T ss_pred -ccccCCCCCe-EEEEECCCcccccCHHHHHHHHHHHHHH---------------------------CCCcEEEEEcCCC
Confidence 0001223444 7899997 99999999999999998875 8999999999742
Q ss_pred --------ChH-HHHHHHHHc----CCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 333 --------DKE-SYEEKIRRL----RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 333 --------~~~-~l~~~~~~~----~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
..+ ..++.++++ +.++|.|+|. ++.+++..+|+.||++++| |..+++|++++||||||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~-v~~~~~~~~l~~adv~v~~---s~~e~~~~~llEAmA~G~PVIa 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR-VPYDQYLALLQVSDVHVYL---TYPFVLSWSLLEAMACGCLVVG 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC-CCHHHHHHHHHhCcEEEEc---CcccccchHHHHHHHCCCCEEE
Confidence 111 122333333 3478999997 9999999999999999998 6678899999999999999999
Q ss_pred ecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhh-hchHHH
Q 011690 400 VSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATE 461 (479)
Q Consensus 400 s~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~ 461 (479)
|+.++.+|++.++.+|+++ .|+++++++|.++++ +++.+++|++++++.... ++|+..
T Consensus 330 s~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~----~~~~~~~l~~~ar~~~~~~fs~~~~ 390 (396)
T cd03818 330 SDTAPVREVITDGENGLLVDFFDPDALAAAVIELLD----DPARRARLRRAARRTALRYDLLSVC 390 (396)
T ss_pred cCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999998 579999999999999 589999999999885433 555443
No 15
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=8.4e-34 Score=291.62 Aligned_cols=353 Identities=20% Similarity=0.204 Sum_probs=246.2
Q ss_pred hHHHHHHHHHhhCCCcEEEEecCCCCCccc-ccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 011690 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (479)
Q Consensus 20 r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~-~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 98 (479)
.+...+..|+++ ||+|+|++......... .....++.+++++ ..+....... .....+..+... +...+.+
T Consensus 26 ~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 97 (398)
T cd03800 26 YVLELARALARL-GHEVDIFTRRIDDALPPIVELAPGVRVVRVP--AGPAEYLPKE-ELWPYLDEFADD----LLRFLRR 97 (398)
T ss_pred hHHHHHHHHhcc-CceEEEEEecCCcccCCccccccceEEEecc--cccccCCChh-hcchhHHHHHHH----HHHHHHh
Confidence 345567777775 99999999654432211 2345689998887 2221111110 011111111111 2222222
Q ss_pred c-CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 99 I-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 99 ~-~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
. .+||+||+|.+ .....+..+++..++|+|.+.|+..................... ..|+..++.+|.+++
T Consensus 98 ~~~~~Div~~~~~---~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ad~ii~ 169 (398)
T cd03800 98 EGGRPDLIHAHYW---DSGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRI-----EAEERLLRAADRVIA 169 (398)
T ss_pred cCCCccEEEEecC---ccchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhh-----hHHHHHHhhCCEEEE
Confidence 1 29999999973 33445556677789999999998642110000000000111111 237778889999999
Q ss_pred eCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccc
Q 011690 178 VTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 253 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
+|+.+++.+.+.++.+ +.+|||| +.+.|.+....... ...
T Consensus 170 ~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~--~~~---------------------------------- 213 (398)
T cd03800 170 STPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEAR--RAR---------------------------------- 213 (398)
T ss_pred cCHHHHHHHHHHccccccccEEECCCCCccceecccchhhH--HHh----------------------------------
Confidence 9999999888876543 7899999 66666554321110 000
Q ss_pred ccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC
Q 011690 254 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 333 (479)
Q Consensus 254 ~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~ 333 (479)
....+++ .+++++||+.+.||++.+++|+..+.++ .++++|+|+|+|+.
T Consensus 214 ---~~~~~~~-~~i~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~~~~ 262 (398)
T cd03800 214 ---LLRDPDK-PRILAVGRLDPRKGIDTLIRAYAELPEL---------------------------RERANLVIVGGPRD 262 (398)
T ss_pred ---hccCCCC-cEEEEEcccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEECCCC
Confidence 1122334 4899999999999999999999999875 78899999998864
Q ss_pred h------HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch
Q 011690 334 K------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 334 ~------~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~ 406 (479)
. +.+++.++++++ ++|.|+|. ++.+++..+++.||++++| |..|++|++++|||+||+|||+++.++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adi~l~p---s~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~ 338 (398)
T cd03800 263 DILAMDEEELRELARELGVIDRVDFPGR-VSREDLPALYRAADVFVNP---ALYEPFGLTALEAMACGLPVVATAVGGPR 338 (398)
T ss_pred cchhhhhHHHHHHHHhcCCCceEEEecc-CCHHHHHHHHHhCCEEEec---ccccccCcHHHHHHhcCCCEEECCCCCHH
Confidence 2 345667788888 78999996 9999999999999999998 66688999999999999999999999999
Q ss_pred hccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 407 ELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 407 e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
|+++++.+|+++ .|+++++++|.++++ +++.++.+++++++.. ..++|+..-+
T Consensus 339 e~i~~~~~g~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s~~~~~~ 394 (398)
T cd03800 339 DIVVDGVTGLLVDPRDPEALAAALRRLLT----DPALRRRLSRAGLRRARARYTWERVAA 394 (398)
T ss_pred HHccCCCCeEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999 469999999999998 5889999999998854 5666655443
No 16
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=3.7e-34 Score=291.81 Aligned_cols=271 Identities=22% Similarity=0.236 Sum_probs=212.1
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
..+||+||+|..+ ....+..+++..|+|+|+++|+....... ....... .+..+ ..++.+.+.+|.++++
T Consensus 80 ~~~~dvvh~~~~~---~~~~~~~~~~~~~~p~i~~~h~~~~~~~~-~~~~~~~-~~~~~-----~~~~~~~~~~d~ii~~ 149 (367)
T cd05844 80 RHRPDLVHAHFGF---DGVYALPLARRLGVPLVVTFHGFDATTSL-ALLLRSR-WALYA-----RRRRRLARRAALFIAV 149 (367)
T ss_pred hhCCCEEEeccCc---hHHHHHHHHHHcCCCEEEEEeCccccccc-hhhcccc-hhHHH-----HHHHHHHHhcCEEEEC
Confidence 3799999999732 23334445567799999999975321110 0000000 11222 2367777899999999
Q ss_pred CHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 179 TQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
|+.+++.+.+. +.+ +.+++|| +.+.|.+...
T Consensus 150 s~~~~~~~~~~-~~~~~~i~vi~~g~d~~~~~~~~~-------------------------------------------- 184 (367)
T cd05844 150 SQFIRDRLLAL-GFPPEKVHVHPIGVDTAKFTPATP-------------------------------------------- 184 (367)
T ss_pred CHHHHHHHHHc-CCCHHHeEEecCCCCHHhcCCCCC--------------------------------------------
Confidence 99999988775 553 8899999 5555544321
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
...+..++++|++.+.||++.+++|+..+.++ .|+++|+|+|+|+..
T Consensus 185 ------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~ 231 (367)
T cd05844 185 ------ARRPPRILFVGRFVEKKGPLLLLEAFARLARR---------------------------VPEVRLVIIGDGPLL 231 (367)
T ss_pred ------CCCCcEEEEEEeeccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCchHH
Confidence 11234799999999999999999999999875 789999999999999
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCC---CCCCCcHHHHHHHhCCCcEEEecCccchhccc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 410 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s---~~e~~p~~llEama~G~PVIas~~~~~~e~i~ 410 (479)
+.+++.++++++ ++|.|.|. ++.+++..+|++||++++|+..+ ..|++|++++|||+||+|||+++.++..|++.
T Consensus 232 ~~~~~~~~~~~~~~~v~~~g~-~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~ 310 (367)
T cd05844 232 AALEALARALGLGGRVTFLGA-QPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVE 310 (367)
T ss_pred HHHHHHHHHcCCCCeEEECCC-CCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhhee
Confidence 999999999888 78999997 99999999999999999995432 25889999999999999999999999999999
Q ss_pred cCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHH
Q 011690 411 VDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEW 462 (479)
Q Consensus 411 ~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~ 462 (479)
++.+|+++ .|+++++++|.++++ +++.+++++.++++.. ..++|+..-
T Consensus 311 ~~~~g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s~~~~~ 361 (367)
T cd05844 311 DGETGLLVPEGDVAALAAALGRLLA----DPDLRARMGAAGRRRVEERFDLRRQT 361 (367)
T ss_pred cCCeeEEECCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 99999999 479999999999998 5888999998887743 356665443
No 17
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2e-33 Score=292.11 Aligned_cols=343 Identities=14% Similarity=0.142 Sum_probs=237.5
Q ss_pred CChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011690 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (479)
Q Consensus 17 ~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 96 (479)
..|+++.+...++++.-++|+|+|.............+|+.+++++......+...++.. + ....+... ++.++
T Consensus 19 ~~g~ve~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~----~~~~~ 92 (380)
T PRK15484 19 GAAAVETWIYQVAKRTSIPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTR-L-DPLPYSQR----ILNIA 92 (380)
T ss_pred cccHHHHHHHHhhhhccCCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhc-c-CchhHHHH----HHHHH
Confidence 467899999999977778999999877652222244577888888621110000001000 0 00111111 11111
Q ss_pred h--hcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCE
Q 011690 97 V--KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANG 174 (479)
Q Consensus 97 ~--~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 174 (479)
. +..++|+||+|+.+ .....+..+..++|+++++|+.. +......++.
T Consensus 93 ~~~~~~~~~vi~v~~~~----~~~~~~~~~~~~~~~v~~~h~~~--------------------------~~~~~~~~~~ 142 (380)
T PRK15484 93 HKFTITKDSVIVIHNSM----KLYRQIRERAPQAKLVMHMHNAF--------------------------EPELLDKNAK 142 (380)
T ss_pred HhcCCCCCcEEEEeCcH----HhHHHHHhhCCCCCEEEEEeccc--------------------------ChhHhccCCE
Confidence 1 12569999999942 22333445566789999999763 0111135799
Q ss_pred EEEeCHHHHHHHHHhhCC-eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccc
Q 011690 175 CLCVTQAMQHELAQNWGI-KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 252 (479)
Q Consensus 175 vi~vS~~~~~~l~~~~~~-~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
++++|+.+++.+.+.++. ++.+|||| +.+.|.+.... ....+
T Consensus 143 ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~---~~~~~--------------------------------- 186 (380)
T PRK15484 143 IIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQP---NLRQQ--------------------------------- 186 (380)
T ss_pred EEEcCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcchH---HHHHH---------------------------------
Confidence 999999999988776443 48999999 76667654321 11111
Q ss_pred cccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC
Q 011690 253 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~ 332 (479)
+++.++. .+++++||+.+.||++.|++|++.+.++ .|+++|+|+|+|+
T Consensus 187 ----~~~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~---------------------------~p~~~lvivG~g~ 234 (380)
T PRK15484 187 ----LNISPDE-TVLLYAGRISPDKGILLLMQAFEKLATA---------------------------HSNLKLVVVGDPT 234 (380)
T ss_pred ----hCCCCCC-eEEEEeccCccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCc
Confidence 1233344 4899999999999999999999999875 8999999999886
Q ss_pred C-----hH----HHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC-CCCCCcHHHHHHHhCCCcEEEecC
Q 011690 333 D-----KE----SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 333 ~-----~~----~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~~e~~p~~llEama~G~PVIas~~ 402 (479)
. .. .+++.+++++ .+|.|+|. ++.+++..+|++||++|+| | ..|+||++++||||||+|||+|+.
T Consensus 235 ~~~~~~~~~~~~~l~~~~~~l~-~~v~~~G~-~~~~~l~~~~~~aDv~v~p---S~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 235 ASSKGEKAAYQKKVLEAAKRIG-DRCIMLGG-QPPEKMHNYYPLADLVVVP---SQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred cccccchhHHHHHHHHHHHhcC-CcEEEeCC-CCHHHHHHHHHhCCEEEeC---CCCccccccHHHHHHHcCCCEEEeCC
Confidence 3 22 3444454544 57999997 9999999999999999998 4 358899999999999999999999
Q ss_pred ccchhccccCccEEEe---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHHHHHHHHHHHHhhc
Q 011690 403 SCIEELVKVDKNGLLF---SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEVISQF 477 (479)
Q Consensus 403 ~~~~e~i~~~~~G~l~---~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~ 477 (479)
|+++|++.++.+|+++ .|+++++++|.++++ |++. .++++++++.. ..++|+ ..+.++.+.+.+-|
T Consensus 310 gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~----d~~~-~~~~~~ar~~~~~~fsw~----~~a~~~~~~l~~~~ 379 (380)
T PRK15484 310 GGITEFVLEGITGYHLAEPMTSDSIISDINRTLA----DPEL-TQIAEQAKDFVFSKYSWE----GVTQRFEEQIHNWF 379 (380)
T ss_pred CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHc----CHHH-HHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHhc
Confidence 9999999999999954 479999999999999 4654 67888887642 455554 44444444444333
No 18
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.4e-33 Score=290.69 Aligned_cols=349 Identities=19% Similarity=0.264 Sum_probs=238.2
Q ss_pred hhHHHHHHHHHhh--CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011690 19 PRMQYQALSLARQ--MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (479)
Q Consensus 19 ~r~~~~a~~La~~--~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 96 (479)
||+..++..|++. ..|+|+|++..... ....++++++++.+. . ..... +.+..+.. ...+.
T Consensus 16 GG~~~~v~~l~~~l~~~~~v~v~~~~~~~-----~~~~~~~~~~~~~~~--~--~~~~~-------~~~~~~~~-~~~~~ 78 (388)
T TIGR02149 16 GGAGVHVEELTRELARLMDVDVRCFGDQR-----FDSEGLTVKGYRPWS--E--LKEAN-------KALGTFSV-DLAMA 78 (388)
T ss_pred ccHhHHHHHHHHHHHHhcCeeEEcCCCch-----hcCCCeEEEEecChh--h--ccchh-------hhhhhhhH-HHHHh
Confidence 4444444444333 13789999875532 234688888887211 1 11111 11111100 01112
Q ss_pred hhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEE
Q 011690 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCL 176 (479)
Q Consensus 97 ~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 176 (479)
.+..++|+||+|+ ....+.+.++++..++|+|+++|+..... ............+..++ ++...+.+|.++
T Consensus 79 ~~~~~~divh~~~---~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~ad~vi 149 (388)
T TIGR02149 79 NDPVDADVVHSHT---WYTFLAGHLAKKLYDKPLVVTAHSLEPLR-PWKEEQLGGGYKLSSWA-----EKTAIEAADRVI 149 (388)
T ss_pred hCCCCCCeEeecc---hhhhhHHHHHHHhcCCCEEEEeecccccc-cccccccccchhHHHHH-----HHHHHhhCCEEE
Confidence 2235799999998 33345566677778999999999864110 00000000111233344 788889999999
Q ss_pred EeCHHHHHHHHHhh-CC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 177 CVTQAMQHELAQNW-GI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 177 ~vS~~~~~~l~~~~-~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
++|+.+++.+.+.+ +. ++.+|||| +.+.|.+.... ....+
T Consensus 150 ~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~---~~~~~-------------------------------- 194 (388)
T TIGR02149 150 AVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGN---VVLDR-------------------------------- 194 (388)
T ss_pred EccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchH---HHHHH--------------------------------
Confidence 99999999988876 43 38899999 66667654321 11111
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
++++++++ +++++||+.+.||++.+++|++.+. ++++++++|+|
T Consensus 195 -----~~~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~------------------------------~~~~l~i~g~g 238 (388)
T TIGR02149 195 -----YGIDRSRP-YILFVGRITRQKGVPHLLDAVHYIP------------------------------KDVQVVLCAGA 238 (388)
T ss_pred -----hCCCCCce-EEEEEcccccccCHHHHHHHHHHHh------------------------------hcCcEEEEeCC
Confidence 23444554 7999999999999999999999874 35789999887
Q ss_pred CChH----HHHHHHHHcCC--CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 332 PDKE----SYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 332 ~~~~----~l~~~~~~~~l--~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
+..+ .+++.+++++. ++|.|.+.+++.+++..+|++||++|+| |..|++|++++|||+||+|||+|+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~p---s~~e~~g~~~lEA~a~G~PvI~s~~~~~ 315 (388)
T TIGR02149 239 PDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCP---SIYEPLGIVNLEAMACGTPVVASATGGI 315 (388)
T ss_pred CCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeC---CccCCCChHHHHHHHcCCCEEEeCCCCH
Confidence 6644 44555555554 3578765459999999999999999998 6678899999999999999999999999
Q ss_pred hhccccCccEEEe--CCH------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHHHHHHHHHH
Q 011690 406 EELVKVDKNGLLF--SSS------SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITE 472 (479)
Q Consensus 406 ~e~i~~~~~G~l~--~~~------~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~ 472 (479)
.|+++++.+|+++ +++ ++++++|.++++ +++.++.|+.++++.. ..++|+...++ ...++++
T Consensus 316 ~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~-~~~~y~~ 386 (388)
T TIGR02149 316 PEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA----DPELAKKMGIAGRKRAEEEFSWGSIAKK-TVEMYRK 386 (388)
T ss_pred HHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHh
Confidence 9999999999999 456 899999999998 5899999999888743 45777766554 3344443
No 19
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1.7e-33 Score=284.93 Aligned_cols=322 Identities=19% Similarity=0.187 Sum_probs=230.9
Q ss_pred CCChhHH-HHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 011690 16 GRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (479)
Q Consensus 16 g~~~r~~-~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (479)
|+.+++. ..+..|++ .||+|+|++..... .......+++++.++ .. .............+.+.
T Consensus 10 gG~e~~~~~l~~~L~~-~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~---------- 73 (355)
T cd03819 10 GGVERGTLELARALVE-RGHRSLVASAGGRL--VAELEAEGSRHIKLP--FI-SKNPLRILLNVARLRRL---------- 73 (355)
T ss_pred CcHHHHHHHHHHHHHH-cCCEEEEEcCCCch--HHHHHhcCCeEEEcc--cc-ccchhhhHHHHHHHHHH----------
Confidence 4433333 34566666 49999999865432 122344578877776 21 11111111111111111
Q ss_pred HHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCE
Q 011690 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANG 174 (479)
Q Consensus 95 l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 174 (479)
+. ..+||+||+|++. ..+.+.++.+..++|+|.++|+..... . + .+.+.+.+|.
T Consensus 74 -~~-~~~~dii~~~~~~---~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~-------~-----~~~~~~~~~~ 127 (355)
T cd03819 74 -IR-EEKVDIVHARSRA---PAWSAYLAARRTRPPFVTTVHGFYSVN---------F-------R-----YNAIMARGDR 127 (355)
T ss_pred -HH-HcCCCEEEECCCc---hhHHHHHHHHhcCCCEEEEeCCchhhH---------H-------H-----HHHHHHhcCE
Confidence 11 2799999999842 234444556677899999999875110 0 1 2233467999
Q ss_pred EEEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHH--HHHHhhhhcccCCCCccccccccccCCcccccch
Q 011690 175 CLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKH--ELFCRLNKILHQPLGVQDCVSNAGMEGQKADETI 248 (479)
Q Consensus 175 vi~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (479)
++++|+.+.+.+.+.++.+ +.+|||| +.+.|.+....... ....+
T Consensus 128 vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~----------------------------- 178 (355)
T cd03819 128 VIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALARE----------------------------- 178 (355)
T ss_pred EEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHH-----------------------------
Confidence 9999999999998777764 8899999 66667554321111 11111
Q ss_pred hccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEE
Q 011690 249 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~Iv 328 (479)
+...++ ..+++++||+.+.||++.+++|+..+.++ .++++|+|+
T Consensus 179 --------~~~~~~-~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~---------------------------~~~~~l~iv 222 (355)
T cd03819 179 --------WPLPKG-KPVILLPGRLTRWKGQEVFIEALARLKKD---------------------------DPDVHLLIV 222 (355)
T ss_pred --------cCCCCC-ceEEEEeeccccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEE
Confidence 122333 35899999999999999999999999874 688999999
Q ss_pred ecCCChHHH----HHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCC-CCCCCcHHHHHHHhCCCcEEEecC
Q 011690 329 GKGPDKESY----EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 329 G~G~~~~~l----~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~~e~~p~~llEama~G~PVIas~~ 402 (479)
|.|+..+.+ ++.++++++ ++|.|.|. .+++..+|++||++++| | ..|++|++++|||+||+|||+++.
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~l~~ad~~i~p---s~~~e~~~~~l~EA~a~G~PvI~~~~ 296 (355)
T cd03819 223 GDAQGRRFYYAELLELIKRLGLQDRVTFVGH---CSDMPAAYALADIVVSA---STEPEAFGRTAVEAQAMGRPVIASDH 296 (355)
T ss_pred ECCcccchHHHHHHHHHHHcCCcceEEEcCC---cccHHHHHHhCCEEEec---CCCCCCCchHHHHHHhcCCCEEEcCC
Confidence 998765443 456677787 68999997 88999999999999998 4 678999999999999999999999
Q ss_pred ccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 403 SCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 403 ~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
++..|++.++.+|+++ +|+++++++|..++.. ++++++++++++++..
T Consensus 297 ~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 297 GGARETVRPGETGLLVPPGDAEALAQALDQILSL---LPEGRAKMFAKARMCV 346 (355)
T ss_pred CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHH
Confidence 9999999999999998 5799999999766664 6899999999998843
No 20
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=4.7e-33 Score=279.27 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=215.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+++|. .....+..+++..++|+|.++|+..................... ...++.+.+.+|.++++|
T Consensus 83 ~~~Div~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~i~~~s 156 (374)
T cd03817 83 LGPDIVHTHTPF--SLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVR----RKLSRRFYNRCDAVIAPS 156 (374)
T ss_pred cCCCEEEECCch--hhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHH----HHHHHHHhhhCCEEEecc
Confidence 799999999863 23344445566778999999998653222111111111111111 023778888999999999
Q ss_pred HHHHHHHHHhhCCe--EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~--~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+.+++.+.+. +.+ +.++||+ +...|.+...... ...
T Consensus 157 ~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~------------------------------------- 195 (374)
T cd03817 157 EKIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGDDE---RRK------------------------------------- 195 (374)
T ss_pred HHHHHHHHhc-CCCCceEEcCCccchhccCccchhHH---HHh-------------------------------------
Confidence 9999887664 443 7899999 6666665432111 111
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHH
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~ 336 (479)
..... ++..++++|++.+.||++.+++|+..+.++ .++++|+++|+|+..+.
T Consensus 196 ~~~~~-~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~ 247 (374)
T cd03817 196 LGIPE-DEPVLLYVGRLAKEKNIDFLIRAFARLLKE---------------------------EPDVKLVIVGDGPEREE 247 (374)
T ss_pred cCCCC-CCeEEEEEeeeecccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchHHH
Confidence 11222 345899999999999999999999998875 68899999999999999
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccE
Q 011690 337 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 415 (479)
Q Consensus 337 l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G 415 (479)
+++.++++++ ++|.|.|. ++.+++..+|+.||++++| +..+++|++++|||+||+|||+++.++..|++.++.+|
T Consensus 248 ~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~l~~---s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g 323 (374)
T cd03817 248 LEELARELGLADRVIFTGF-VPREELPDYYKAADLFVFA---STTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENG 323 (374)
T ss_pred HHHHHHHcCCCCcEEEecc-CChHHHHHHHHHcCEEEec---ccccCcChHHHHHHHcCCcEEEeCCCChhhheecCcee
Confidence 9999998888 78999997 9999999999999999998 55677999999999999999999999999999999999
Q ss_pred EEeCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 416 LLFSSS-SELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 416 ~l~~~~-~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
+++++. .++++++.++++ +++.++.+++++++....+.|...+++
T Consensus 324 ~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (374)
T cd03817 324 FLFPPGDEALAEALLRLLQ----DPELRRRLSKNAEESAEKFSFAKKVEK 369 (374)
T ss_pred EEeCCCCHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999543 399999999999 588889999999886544444444443
No 21
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.3e-32 Score=276.51 Aligned_cols=358 Identities=23% Similarity=0.320 Sum_probs=252.6
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccc------cCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHH
Q 011690 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAI------LEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (479)
Q Consensus 16 g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~------~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 89 (479)
|...++...+..|+++ ||+|++++.......... ....++++++++. .... .......+.....+...
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~-- 88 (394)
T cd03794 15 GGAFRTTELAEELVKR-GHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPL--PPYK-KNGLLKRLLNYLSFALS-- 88 (394)
T ss_pred CcceeHHHHHHHHHhC-CceEEEEecCCCcccccccccceEEecCCeEEEEEec--CCCC-ccchHHHHHhhhHHHHH--
Confidence 3455666678888886 999999997654333222 2346888888883 2211 11111111111111111
Q ss_pred HHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhh-hhcCCC-chhHHHHHHHhHHHHHHH
Q 011690 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS-LSLGRR-SHFVSIYRCFSVLRIEKY 167 (479)
Q Consensus 90 ~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~e~~ 167 (479)
....+..+..+||+||+++++ ......+...++..++|++++.|+....... ...... ....+..+++ ++.
T Consensus 89 -~~~~~~~~~~~~D~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 161 (394)
T cd03794 89 -ALLALLKRRRRPDVIIATSPP-LLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKL-----ERL 161 (394)
T ss_pred -HHHHHHhcccCCCEEEEcCCh-HHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHH-----HHH
Confidence 122222135799999999843 4444445555666689999999986422111 111111 1111334444 888
Q ss_pred HhhcCCEEEEeCHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcc
Q 011690 168 YGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQK 243 (479)
Q Consensus 168 ~~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (479)
..+.+|.++++|+.+++.+. .++. ++.++||+ +...+.+...... ..+
T Consensus 162 ~~~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~------------------------ 213 (394)
T cd03794 162 IYRRADAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPPADES---LRK------------------------ 213 (394)
T ss_pred HHhcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCccchhh---hhh------------------------
Confidence 88999999999999999887 3333 38899999 5544544331111 000
Q ss_pred cccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCE
Q 011690 244 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 323 (479)
. ....++..++++|++.+.||++.+++|+..+.+ .+++
T Consensus 214 -------------~-~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~----------------------------~~~~ 251 (394)
T cd03794 214 -------------E-LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKD----------------------------RPDI 251 (394)
T ss_pred -------------c-cCCCCcEEEEEecCcccccCHHHHHHHHHHHhh----------------------------cCCe
Confidence 0 112345689999999999999999999998864 2689
Q ss_pred EEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCC--CCCCcHHHHHHHhCCCcEEEec
Q 011690 324 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~--~e~~p~~llEama~G~PVIas~ 401 (479)
+|+|+|+|+..+.+++.+...++++|.|.|. ++.+++.++|++||++++|+..+. +.++|.+++|||+||+|||+++
T Consensus 252 ~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~ 330 (394)
T cd03794 252 RFLIVGDGPEKEELKELAKALGLDNVTFLGR-VPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASV 330 (394)
T ss_pred EEEEeCCcccHHHHHHHHHHcCCCcEEEeCC-CChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEec
Confidence 9999999999999988888878889999995 999999999999999999965552 6778999999999999999999
Q ss_pred CccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhh-hhchHHH
Q 011690 402 YSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATE 461 (479)
Q Consensus 402 ~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~ 461 (479)
.++..+++.++.+|+++ +|+++++++|.++++ +++.++++++++++... .++|+..
T Consensus 331 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~ 389 (394)
T cd03794 331 DGESAELVEEAGAGLVVPPGDPEALAAAILELLD----DPEERAEMGENGRRYVEEKFSREKL 389 (394)
T ss_pred CCCchhhhccCCcceEeCCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhhcHHHH
Confidence 99999999998999999 479999999999997 68999999999988543 4555443
No 22
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7.4e-33 Score=305.25 Aligned_cols=279 Identities=17% Similarity=0.168 Sum_probs=202.0
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE-EecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
.+|||||+|+ ....+++.++++..++|+|+ +.|+..... . ...+...++.. ........++.++++
T Consensus 399 ~kpDIVH~h~---~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~-~-----~~~~~~~~~~l----~~~l~~~~~~i~Vs~ 465 (694)
T PRK15179 399 SVPSVVHIWQ---DGSIFACALAALLAGVPRIVLSVRTMPPVD-R-----PDRYRVEYDII----YSELLKMRGVALSSN 465 (694)
T ss_pred cCCcEEEEeC---CcHHHHHHHHHHHcCCCEEEEEeCCCcccc-c-----hhHHHHHHHHH----HHHHHhcCCeEEEeC
Confidence 7999999998 45556677788888999877 567653110 0 01110111111 011111234566777
Q ss_pred CHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 179 TQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
|+..++.+.+.++.+ +.||||| +.+.|.+.+...+.. ..+.
T Consensus 466 S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~--~~~~--------------------------------- 510 (694)
T PRK15179 466 SQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMM--AQFD--------------------------------- 510 (694)
T ss_pred cHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHH--Hhhc---------------------------------
Confidence 888888777776764 8999999 766676543211110 0000
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
... ++...+|+++||+.+.||++.+|+|+..+.++ .|+++|+|+|+|+..
T Consensus 511 --~~~-~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~---------------------------~p~~~LvIvG~G~~~ 560 (694)
T PRK15179 511 --ART-SDARFTVGTVMRVDDNKRPFLWVEAAQRFAAS---------------------------HPKVRFIMVGGGPLL 560 (694)
T ss_pred --ccc-CCCCeEEEEEEeCCccCCHHHHHHHHHHHHHH---------------------------CcCeEEEEEccCcch
Confidence 011 22234899999999999999999999998775 889999999999999
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 413 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~ 413 (479)
+.+++.++++++ ++|.|+|. .++++.+|+++|++|+| |..|+||++++|||+||+|||+|+.+|.+|+|.++.
T Consensus 561 ~~L~~l~~~lgL~~~V~flG~---~~dv~~ll~aaDv~Vlp---S~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~ 634 (694)
T PRK15179 561 ESVREFAQRLGMGERILFTGL---SRRVGYWLTQFNAFLLL---SRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGV 634 (694)
T ss_pred HHHHHHHHHcCCCCcEEEcCC---cchHHHHHHhcCEEEec---cccccchHHHHHHHHcCCeEEEECCCChHHHccCCC
Confidence 999999999999 78999997 57899999999999998 677999999999999999999999999999999999
Q ss_pred cEEEeC--C--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 011690 414 NGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 465 (479)
Q Consensus 414 ~G~l~~--~--~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 465 (479)
+|++++ | +++|+++|.+++.....+++..+..++.+.+ .++|+...+++
T Consensus 635 ~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~---~FS~~~~~~~~ 687 (694)
T PRK15179 635 TGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASA---RFSLNQMIAST 687 (694)
T ss_pred CEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHH---hCCHHHHHHHH
Confidence 999994 4 4689999998887533344443333333333 67777665543
No 23
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1e-32 Score=279.75 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=231.0
Q ss_pred CChhHHHH----HHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011690 17 RSPRMQYQ----ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (479)
Q Consensus 17 ~~~r~~~~----a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 92 (479)
..+|+... +..|.+ .||+|+|++....... ......|+++++++ ..... ........+.. +
T Consensus 13 ~~gG~~~~~~~la~~L~~-~g~~v~v~~~~~~~~~-~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~--------~ 77 (363)
T cd04955 13 KYGGFETFVEELAPRLVA-RGHEVTVYCRSPYPKQ-KETEYNGVRLIHIP--APEIG---GLGTIIYDILA--------I 77 (363)
T ss_pred ccCcHHHHHHHHHHHHHh-cCCCEEEEEccCCCCC-cccccCCceEEEcC--CCCcc---chhhhHHHHHH--------H
Confidence 34455544 455555 5999999997654333 13345789999988 22111 11111111111 1
Q ss_pred HHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcC
Q 011690 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMA 172 (479)
Q Consensus 93 ~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 172 (479)
+....+..++|++|...|.. ..++.++ +..+.|++++.|+..+... .......++.++. |+...+.+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~-~~~~~~~v~~~h~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~a 144 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI---APFLPLL-RLKGKKVVVNMDGLEWKRA----KWGRPAKRYLKFG-----EKLAVKFA 144 (363)
T ss_pred HHHHhccCCeEEEEecCccH---HHHHHHH-HhcCCCEEEEccCcceeec----ccccchhHHHHHH-----HHHHHhhc
Confidence 11111224566666655322 2333333 3348899999998653211 0112222333444 78888899
Q ss_pred CEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 173 NGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 173 d~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
|.++++|+.+++.+.+.++.+..+|||| +...+.+. ......
T Consensus 145 d~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~~-----~~~~~~-------------------------------- 187 (363)
T cd04955 145 DRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVSSEE-----DEILKK-------------------------------- 187 (363)
T ss_pred cEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhcchh-----hhhHHh--------------------------------
Confidence 9999999999999988888778999999 54444330 111111
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
.+..+ ++ .++++||+.+.||++.+++|++.+. ++++|+|+|+|
T Consensus 188 -----~~~~~-~~-~i~~~G~~~~~Kg~~~li~a~~~l~------------------------------~~~~l~ivG~~ 230 (363)
T cd04955 188 -----YGLEP-GR-YYLLVGRIVPENNIDDLIEAFSKSN------------------------------SGKKLVIVGNA 230 (363)
T ss_pred -----cCCCC-Cc-EEEEEecccccCCHHHHHHHHHhhc------------------------------cCceEEEEcCC
Confidence 11222 23 5789999999999999999998763 26999999999
Q ss_pred CChHHHHHHHH-HcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCC-CCCcHHHHHHHhCCCcEEEecCccchhc
Q 011690 332 PDKESYEEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSYSCIEEL 408 (479)
Q Consensus 332 ~~~~~l~~~~~-~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~-e~~p~~llEama~G~PVIas~~~~~~e~ 408 (479)
+..+.+++.++ +++. ++|.|+|. ++.+++..++++||++++| +.. |++|++++|||+||+|||+|+.++..|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~p---s~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~ 306 (363)
T cd04955 231 DHNTPYGKLLKEKAAADPRIIFVGP-IYDQELLELLRYAALFYLH---GHSVGGTNPSLLEAMAYGCPVLASDNPFNREV 306 (363)
T ss_pred CCcchHHHHHHHHhCCCCcEEEccc-cChHHHHHHHHhCCEEEeC---CccCCCCChHHHHHHHcCCCEEEecCCcccee
Confidence 77777777766 5666 78999997 9999999999999999998 444 8899999999999999999999999999
Q ss_pred cccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHH
Q 011690 409 VKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 409 i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
+++ +|+++.+.+.+++++.++++ +++.+.+++.++++.. ..++|+..-++
T Consensus 307 ~~~--~g~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 357 (363)
T cd04955 307 LGD--KAIYFKVGDDLASLLEELEA----DPEEVSAMAKAARERIREKYTWEKIADQ 357 (363)
T ss_pred ecC--CeeEecCchHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 965 78888665559999999999 5788899999988754 24666554443
No 24
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=5e-33 Score=292.89 Aligned_cols=360 Identities=16% Similarity=0.144 Sum_probs=241.0
Q ss_pred cCCC-CChhHHHHHH-HHHhh-CCCcEEEEecCCCCCc----------ccccCCCCeEEEEee-c-CCCCCCCCCchhHH
Q 011690 13 GDLG-RSPRMQYQAL-SLARQ-MSLEVDVVAYGGSKPH----------AAILEHPSIHIHTMT-Q-WPTIPRGLPKVLKP 77 (479)
Q Consensus 13 ~~~g-~~~r~~~~a~-~La~~-~G~eV~Vv~~~~~~~~----------~~~~~~~gi~i~~~~-~-~~~~~~~~~~~~~~ 77 (479)
++.| ++.|+.-.|. .|.+. .+|+|+|+|......+ -.+...++++++++. . ...+...+++
T Consensus 10 ~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r---- 85 (419)
T cd03806 10 CNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPR---- 85 (419)
T ss_pred CCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCc----
Confidence 4445 6777776654 34332 3899999997754322 012223567766652 1 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCch----hhhhhhhcCC-----
Q 011690 78 VLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG----YTLLSLSLGR----- 148 (479)
Q Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~----~~~~~~~~~~----- 148 (479)
+..+...+..++..+..+. + .+|||++.+.+... +..+ ++...++|+|...| ++ ..+...+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~-~-~~pDv~i~~~g~~~-~~~~---~~~~~~~~~i~y~h-~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 86 FTLLGQALGSMILGLEALL-K-LVPDIFIDTMGYPF-TYPL---VRLLGGCPVGAYVH-YPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred eeeHHHHHHHHHHHHHHHH-h-cCCCEEEEcCCccc-HHHH---HHHhcCCeEEEEec-CCcchHHHHHHHhhccccccC
Confidence 1122233333222222221 1 57999888874322 2222 23344889999999 33 1222222211
Q ss_pred -----Cch---hHHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC--eEEEecCC-CCCCCCCCChHHHHHHH
Q 011690 149 -----RSH---FVSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQ-PPEFFHPTSLEEKHELF 217 (479)
Q Consensus 149 -----~~~---~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~-~~~~f~~~~~~~~~~~~ 217 (479)
.+. ..+...+..+..++++..+.||.++++|+..++.+.+.++. ++.+|||+ +.+.|.+.+. .
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~----~-- 232 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL----D-- 232 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc----c--
Confidence 111 22333333355678999999999999999999999888766 58999998 5444433221 0
Q ss_pred HhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhh
Q 011690 218 CRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 297 (479)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~ 297 (479)
. ..+...++++||+.+.||++.+|+|+..+.++...
T Consensus 233 -----------------------------------------~-~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~-- 268 (419)
T cd03806 233 -----------------------------------------E-KTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPE-- 268 (419)
T ss_pred -----------------------------------------c-ccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcc--
Confidence 0 11224899999999999999999999999875000
Q ss_pred ccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC------ChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCE
Q 011690 298 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP------DKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADL 370 (479)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~------~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi 370 (479)
...++++|+|+|+|+ ..+.++++++++++ ++|.|+|. ++.+++..+|+.||+
T Consensus 269 --------------------~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~-v~~~~l~~~l~~adv 327 (419)
T cd03806 269 --------------------EIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVN-APFEELLEELSTASI 327 (419)
T ss_pred --------------------cccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecC-CCHHHHHHHHHhCeE
Confidence 001359999999874 34678888999999 69999997 999999999999999
Q ss_pred EEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc-chhccc---cCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011690 371 GVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-IEELVK---VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLR 446 (479)
Q Consensus 371 ~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~-~~e~i~---~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~ 446 (479)
++.| +..|+||++++||||||+|||+++.|| ..|+++ ++.+|++++|++++|++|.+++++ +++.++.++
T Consensus 328 ~v~~---s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~---~~~~~~~~~ 401 (419)
T cd03806 328 GLHT---MWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSL---SEEERLRIR 401 (419)
T ss_pred EEEC---CccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhC---CHHHHHHHH
Confidence 9987 666899999999999999999999876 468888 899999999999999999999996 455666666
Q ss_pred HHHHHhhhhhchHH
Q 011690 447 NGTLEMGLSARWAT 460 (479)
Q Consensus 447 ~~~~~~~~~~~w~~ 460 (479)
+++++....++|+.
T Consensus 402 ~~~~~~~~~fs~~~ 415 (419)
T cd03806 402 RAARSSVKRFSDEE 415 (419)
T ss_pred HHHHHHHHhhCHHH
Confidence 66666445566643
No 25
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=4e-33 Score=297.38 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=212.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-----cCCcEEEEecCchhhh-hh---h-hcCCCchh--HHHHHHHhHHHHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-----RRSAFIVDWHNFGYTL-LS---L-SLGRRSHF--VSIYRCFSVLRIEKY 167 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-----~~~~~ii~~h~~~~~~-~~---~-~~~~~~~~--~~~~~~~~~~~~e~~ 167 (479)
.+||+||+|. +.+.+++.+++.. .++|+|+|.|+..+.- .. . ..+..... .....++....+.+.
T Consensus 117 ~~pDiiH~h~---w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T PRK00654 117 PRPDIVHAHD---WHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKA 193 (466)
T ss_pred CCCceEEECC---cHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHH
Confidence 4899999998 5566666666544 3789999999975320 00 0 00000000 000000000122455
Q ss_pred HhhcCCEEEEeCHHHHHHHHHh-h-----------CCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccc
Q 011690 168 YGKMANGCLCVTQAMQHELAQN-W-----------GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCV 234 (479)
Q Consensus 168 ~~~~ad~vi~vS~~~~~~l~~~-~-----------~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479)
..+.||.++++|+.+++++... + ..++.+|+|| |.+.|.|..... +..++...
T Consensus 194 ~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~---~~~~~~~~----------- 259 (466)
T PRK00654 194 GLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPL---LAANYSAD----------- 259 (466)
T ss_pred HHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcc---cccccChh-----------
Confidence 6688999999999999888652 2 1248999999 888887753110 00000000
Q ss_pred cccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhcc
Q 011690 235 SNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 314 (479)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (479)
-+++....... .+..+++++++..+++++||+.++||++.+++|++.+.+
T Consensus 260 ---~~~~k~~~k~~----l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~----------------------- 309 (466)
T PRK00654 260 ---DLEGKAENKRA----LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE----------------------- 309 (466)
T ss_pred ---hhhchHHHHHH----HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh-----------------------
Confidence 00000000000 112334554233489999999999999999999998864
Q ss_pred CcccCCCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHh
Q 011690 315 GKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 392 (479)
Q Consensus 315 ~~~~~~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama 392 (479)
.+++|+|+|+|+ ..+.+++.+++++ .++.+.+. .+.+.+..+|++||++|+| |..|++|++++|||+
T Consensus 310 ------~~~~lvivG~g~~~~~~~l~~l~~~~~-~~v~~~~g-~~~~~~~~~~~~aDv~v~P---S~~E~~gl~~lEAma 378 (466)
T PRK00654 310 ------QGGQLVLLGTGDPELEEAFRALAARYP-GKVGVQIG-YDEALAHRIYAGADMFLMP---SRFEPCGLTQLYALR 378 (466)
T ss_pred ------cCCEEEEEecCcHHHHHHHHHHHHHCC-CcEEEEEe-CCHHHHHHHHhhCCEEEeC---CCCCCchHHHHHHHH
Confidence 268999999986 3467888888876 35665433 3555678999999999999 778999999999999
Q ss_pred CCCcEEEecCccchhccccC------ccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 393 CGLPVCAVSYSCIEELVKVD------KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 393 ~G~PVIas~~~~~~e~i~~~------~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
||+|+|+++.||..|++.++ .+|+++ .|+++|+++|.++++.+. +++.+++++.++.+ ..++|+..-++
T Consensus 379 ~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~-~~~~~~~~~~~~~~--~~fsw~~~a~~ 455 (466)
T PRK00654 379 YGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYR-QPPLWRALQRQAMA--QDFSWDKSAEE 455 (466)
T ss_pred CCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhc--cCCChHHHHHH
Confidence 99999999999999999888 899999 579999999999887432 46668888888865 37888877765
Q ss_pred HHHHHHHHHHh
Q 011690 465 HAKPLITEVIS 475 (479)
Q Consensus 465 ~~~~~~~~~~~ 475 (479)
...+++++++
T Consensus 456 -~~~lY~~~~~ 465 (466)
T PRK00654 456 -YLELYRRLLG 465 (466)
T ss_pred -HHHHHHHHhh
Confidence 3556666654
No 26
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=9e-33 Score=279.97 Aligned_cols=324 Identities=15% Similarity=0.136 Sum_probs=225.5
Q ss_pred ChhHHHHHHHHHhh---CCCcEEEEecCCCCC-cccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011690 18 SPRMQYQALSLARQ---MSLEVDVVAYGGSKP-HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (479)
Q Consensus 18 ~~r~~~~a~~La~~---~G~eV~Vv~~~~~~~-~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 93 (479)
.+|.+..+..+++. .||+|++++...... ........++++++++ .. . ......+..+.+.+.
T Consensus 11 ~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~~------- 77 (358)
T cd03812 11 RGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIP--AR-K---KNPLKYFKKLYKLIK------- 77 (358)
T ss_pred CccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEec--CC-C---ccHHHHHHHHHHHHh-------
Confidence 34444444443333 599999999876432 1122334577777765 11 1 111122222222222
Q ss_pred HHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcE-EEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcC
Q 011690 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMA 172 (479)
Q Consensus 94 ~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~-ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 172 (479)
..+||+||+|++. ...+...+ .+..+.|. +++.|+..+... ........+++ ++.+.+.+
T Consensus 78 -----~~~~Dvv~~~~~~--~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~~ 138 (358)
T cd03812 78 -----KNKYDIVHVHGSS--ASGFILLA-AKKAGVKVRIAHSHNTSDSHD------KKKKILKYKVL-----RKLINRLA 138 (358)
T ss_pred -----cCCCCEEEEeCcc--hhHHHHHH-HhhCCCCeEEEEecccccccc------ccchhhHHHHH-----HHHHHhcC
Confidence 2799999999954 22333333 33456665 556776542110 00000111223 66777889
Q ss_pred CEEEEeCHHHHHHHHHhh-CCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhc
Q 011690 173 NGCLCVTQAMQHELAQNW-GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 250 (479)
Q Consensus 173 d~vi~vS~~~~~~l~~~~-~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
+.++++|+...+.+.+.. ..++.+|||| +.+.|.+.... +.. ...
T Consensus 139 ~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~-~~~-~~~------------------------------- 185 (358)
T cd03812 139 TDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEI-RKK-RRE------------------------------- 185 (358)
T ss_pred CEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchh-hhH-HHH-------------------------------
Confidence 999999999998887642 2348999999 65556544321 111 111
Q ss_pred cccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec
Q 011690 251 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~ 330 (479)
.....+ +..|+++||+.+.||++.+++|+..+.++ .|+++|+|+|+
T Consensus 186 ------~~~~~~-~~~i~~vGr~~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~ivG~ 231 (358)
T cd03812 186 ------LGILED-KFVIGHVGRFSEQKNHEFLIEIFAELLKK---------------------------NPNAKLLLVGD 231 (358)
T ss_pred ------cCCCCC-CEEEEEEeccccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeC
Confidence 112233 45899999999999999999999999875 78999999999
Q ss_pred CCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcc
Q 011690 331 GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 409 (479)
Q Consensus 331 G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i 409 (479)
|+..+.+++.++++++ ++|.|+|. .+++.++|+.||++|+| |..|++|++++||||||+|||+|+.++.+|++
T Consensus 232 g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~p---s~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i 305 (358)
T cd03812 232 GELEEEIKKKVKELGLEDKVIFLGV---RNDVPELLQAMDVFLFP---SLYEGLPLVLIEAQASGLPCILSDTITKEVDL 305 (358)
T ss_pred CchHHHHHHHHHhcCCCCcEEEecc---cCCHHHHHHhcCEEEec---ccccCCCHHHHHHHHhCCCEEEEcCCchhhhh
Confidence 9999999999999988 78999997 88999999999999999 56689999999999999999999999999999
Q ss_pred ccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 410 KVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 410 ~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
.++ .|++. +++++++++|.++++ +++.+++++..+..
T Consensus 306 ~~~-~~~~~~~~~~~~~a~~i~~l~~----~~~~~~~~~~~~~~ 344 (358)
T cd03812 306 TDL-VKFLSLDESPEIWAEEILKLKS----EDRRERSSESIKKK 344 (358)
T ss_pred ccC-ccEEeCCCCHHHHHHHHHHHHh----Ccchhhhhhhhhhc
Confidence 884 45555 447999999999999 47777777766665
No 27
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.2e-32 Score=274.23 Aligned_cols=333 Identities=17% Similarity=0.183 Sum_probs=235.5
Q ss_pred CCCChhHHH-HHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011690 15 LGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (479)
Q Consensus 15 ~g~~~r~~~-~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 93 (479)
.|+.+.+.. .+..|.++ ||+|+|++....... ......++++++++. ............. ...
T Consensus 13 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~------ 76 (357)
T cd03795 13 RGGIEQVIRDLAEGLAAR-GIEVAVLCASPEPKG-RDEERNGHRVIRAPS--LLNVASTPFSPSF------FKQ------ 76 (357)
T ss_pred CCcHHHHHHHHHHHHHhC-CCceEEEecCCCCcc-hhhhccCceEEEeec--ccccccccccHHH------HHH------
Confidence 444444432 34556664 999999997765433 222345667777762 1111000000000 000
Q ss_pred HHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCC
Q 011690 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMAN 173 (479)
Q Consensus 94 ~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 173 (479)
+..+..+||+||+|.|..... ...+. ...+.|.++++|+..+. .......++++ ++.+.+.||
T Consensus 77 -~~~~~~~~Dii~~~~~~~~~~--~~~~~-~~~~~~~i~~~h~~~~~--------~~~~~~~~~~~-----~~~~~~~~d 139 (357)
T cd03795 77 -LKKLAKKADVIHLHFPNPLAD--LALLL-LPRKKPVVVHWHSDIVK--------QKLLLKLYRPL-----QRRFLRRAD 139 (357)
T ss_pred -HHhcCCCCCEEEEecCcchHH--HHHHH-hccCceEEEEEcChhhc--------cchhhhhhhHH-----HHHHHHhcC
Confidence 001237999999998643322 11122 22578999999975421 11233344444 777888999
Q ss_pred EEEEeCHHHHHHHHHhhC--CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhc
Q 011690 174 GCLCVTQAMQHELAQNWG--IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 250 (479)
Q Consensus 174 ~vi~vS~~~~~~l~~~~~--~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
.++++|+.+.+.+....+ .++.++||| +.+.|.+..... .. .
T Consensus 140 ~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~-~~---~------------------------------- 184 (357)
T cd03795 140 AIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALE-EA---I------------------------------- 184 (357)
T ss_pred EEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhh-hH---h-------------------------------
Confidence 999999999987766543 348999999 655565443211 00 0
Q ss_pred cccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec
Q 011690 251 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~ 330 (479)
... +.++..++++|++.+.||++.+++|++.+. +++|+|+|+
T Consensus 185 ------~~~-~~~~~~i~~~G~~~~~K~~~~li~a~~~l~-------------------------------~~~l~i~G~ 226 (357)
T cd03795 185 ------WRR-AAGRPFFLFVGRLVYYKGLDVLLEAAAALP-------------------------------DAPLVIVGE 226 (357)
T ss_pred ------hcC-CCCCcEEEEecccccccCHHHHHHHHHhcc-------------------------------CcEEEEEeC
Confidence 011 223358999999999999999999998762 699999999
Q ss_pred CCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcc
Q 011690 331 GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 409 (479)
Q Consensus 331 G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i 409 (479)
|+..+.+++.+++++. ++|.|.|. ++.+++..+++.||++++|+.. ..|++|++++|||+||+|||+++.++..+.+
T Consensus 227 g~~~~~~~~~~~~~~~~~~V~~~g~-v~~~~~~~~~~~ad~~i~ps~~-~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i 304 (357)
T cd03795 227 GPLEAELEALAAALGLLDRVRFLGR-LDDEEKAALLAACDVFVFPSVE-RSEAFGIVLLEAMAFGKPVISTEIGTGGSYV 304 (357)
T ss_pred ChhHHHHHHHHHhcCCcceEEEcCC-CCHHHHHHHHHhCCEEEeCCcc-cccccchHHHHHHHcCCCEEecCCCCchhHH
Confidence 9999999999988888 79999996 9999999999999999998432 4689999999999999999999999999988
Q ss_pred cc-CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchH
Q 011690 410 KV-DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWA 459 (479)
Q Consensus 410 ~~-~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~ 459 (479)
.+ +.+|+++ +|+++++++|.++++ +++.+++|++++++.. ..++|+
T Consensus 305 ~~~~~~g~~~~~~d~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 305 NLHGVTGLVVPPGDPAALAEAIRRLLE----DPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred hhCCCceEEeCCCCHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHhcchH
Confidence 86 8999998 579999999999999 6899999999998853 344443
No 28
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=7.9e-32 Score=267.88 Aligned_cols=343 Identities=20% Similarity=0.229 Sum_probs=239.4
Q ss_pred EEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHH
Q 011690 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLI 86 (479)
Q Consensus 7 ~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (479)
+++++...-|....+...+..|.++ ||+|++++....... .....+++++.++. ... ... ....+.. +.
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~-~~~-~~~~~~~----~~ 70 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE--ELEALGVKVIPIPL--DRR-GIN-PFKDLKA----LL 70 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc--ccccCCceEEeccc--ccc-ccC-hHhHHHH----HH
Confidence 3444444223333445566777675 999999997765432 33457888888872 210 111 1111111 11
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHH-hcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHH
Q 011690 87 QFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIE 165 (479)
Q Consensus 87 ~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~-~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 165 (479)
++ ...+ +..+||+||+++. .....+.++++ ..+.+++.++|+..+.... ..........+ +
T Consensus 71 ~~----~~~~-~~~~~dvv~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~-----~ 132 (359)
T cd03808 71 RL----YRLL-RKERPDIVHTHTP---KPGILGRLAARLAGVPKVIYTVHGLGFVFTS-----GGLKRRLYLLL-----E 132 (359)
T ss_pred HH----HHHH-HhcCCCEEEEccc---cchhHHHHHHHHcCCCCEEEEecCcchhhcc-----chhHHHHHHHH-----H
Confidence 11 1111 2279999999973 22334444444 4556677778877532211 11122233333 7
Q ss_pred HHHhhcCCEEEEeCHHHHHHHHHhhCC----eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccC
Q 011690 166 KYYGKMANGCLCVTQAMQHELAQNWGI----KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGME 240 (479)
Q Consensus 166 ~~~~~~ad~vi~vS~~~~~~l~~~~~~----~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
+...+.+|.++++|+.+.+.+.+.... .+.+++++ +.+.+.+....
T Consensus 133 ~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 183 (359)
T cd03808 133 RLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP----------------------------- 183 (359)
T ss_pred HHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-----------------------------
Confidence 888889999999999999998887543 25566776 44444332210
Q ss_pred CcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCC
Q 011690 241 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 320 (479)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
.++++..++++|++.+.||++.++++++.+.++ .
T Consensus 184 -------------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~---------------------------~ 217 (359)
T cd03808 184 -------------------IPEDDPVFLFVARLLKDKGIDELLEAARILKAK---------------------------G 217 (359)
T ss_pred -------------------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhc---------------------------C
Confidence 012345899999999999999999999998764 7
Q ss_pred CCEEEEEEecCCChHHHHHH-HHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEE
Q 011690 321 PRLLFIITGKGPDKESYEEK-IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 321 p~~~l~IvG~G~~~~~l~~~-~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVI 398 (479)
++++|+|+|.|+..+..... +.+.+. ++|.|.|. .+++.++|++||++++| +..|++|++++|||+||+|||
T Consensus 218 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~i~p---s~~e~~~~~~~Ea~~~G~Pvi 291 (359)
T cd03808 218 PNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF---RDDVPELLAAADVFVLP---SYREGLPRVLLEAMAMGRPVI 291 (359)
T ss_pred CCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec---cccHHHHHHhccEEEec---CcccCcchHHHHHHHcCCCEE
Confidence 89999999999876665554 666666 78999997 88999999999999998 555899999999999999999
Q ss_pred EecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hhhhchHHHHH
Q 011690 399 AVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWE 463 (479)
Q Consensus 399 as~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~ 463 (479)
+++.++..|++.++.+|+++ +|+++++++|.++++ +++.++.+++++++. ...++|+...+
T Consensus 292 ~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~ 355 (359)
T cd03808 292 ATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIE----DPELRARMGQAARKRAEEEFDEEIVVK 355 (359)
T ss_pred EecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999 469999999999988 588899999998886 45666655443
No 29
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.3e-32 Score=272.05 Aligned_cols=339 Identities=20% Similarity=0.260 Sum_probs=234.1
Q ss_pred ChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011690 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (479)
Q Consensus 18 ~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 97 (479)
..++...+..|+++ ||+|++++.......... ...+.+...+.... ............+.+.+
T Consensus 17 ~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------ 79 (364)
T cd03814 17 VRTLQRLVEHLRAR-GHEVLVIAPGPFRESEGP--ARVVPVPSVPLPGY--PEIRLALPPRRRVRRLL------------ 79 (364)
T ss_pred ehHHHHHHHHHHHC-CCEEEEEeCCchhhccCC--CCceeecccccCcc--cceEecccchhhHHHHH------------
Confidence 34555667777775 999999997654322111 12233322220000 00110011111122222
Q ss_pred hcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 98 ~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
+..+||+||++++.. ....+..+++..++|+++++|+........ ..........+.+ ++.+.+.+|.+++
T Consensus 80 ~~~~pdii~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~d~i~~ 150 (364)
T cd03814 80 DAFAPDVVHIATPGP--LGLAALRAARRLGIPVVTSYHTDFPEYLRY--YGLGPLSWLAWAY-----LRWFHNRADRVLV 150 (364)
T ss_pred HhcCCCEEEEeccch--hhHHHHHHHHHcCCCEEEEEecChHHHhhh--cccchHhHhhHHH-----HHHHHHhCCEEEe
Confidence 227999999997532 233445556678899999999764222111 0111222222333 6777889999999
Q ss_pred eCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 178 VTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+|+.+.+.+.+....++.+++|| +.+.|.+..... ....+
T Consensus 151 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~------------------------------------- 191 (364)
T cd03814 151 PSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDE--ALRAR------------------------------------- 191 (364)
T ss_pred CCHHHHHHHhccCCCceeecCCCccccccCcccccH--HHHHH-------------------------------------
Confidence 99999986655433348899999 666676553211 11111
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHH
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~ 336 (479)
++ ..++..++++|++.+.||++.++++++.+.+ . ++++|+|+|.|+..+.
T Consensus 192 ~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~---------------------------~-~~~~l~i~G~~~~~~~ 241 (364)
T cd03814 192 LG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRR---------------------------R-PPVRLVIVGDGPARAR 241 (364)
T ss_pred hC--CCCCeEEEEEeccccccCHHHHHHHHHHhhh---------------------------c-CCceEEEEeCCchHHH
Confidence 01 2234589999999999999999999999864 2 6899999999987666
Q ss_pred HHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEE
Q 011690 337 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 416 (479)
Q Consensus 337 l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~ 416 (479)
++ ...++|.|.|. ++.+++..+|++||++++| +..+++|++++|||+||+|||+++.++..|+++++.+|+
T Consensus 242 ~~-----~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~~---s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~ 312 (364)
T cd03814 242 LE-----ARYPNVHFLGF-LDGEELAAAYASADVFVFP---SRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGL 312 (364)
T ss_pred Hh-----ccCCcEEEEec-cCHHHHHHHHHhCCEEEEC---cccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceE
Confidence 55 11278999996 9999999999999999998 556889999999999999999999999999999999999
Q ss_pred Ee--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 417 LF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 417 l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
++ .+.++++++|.++++ +++.++++++++.+....++|+...++
T Consensus 313 ~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
T cd03814 313 LVEPGDAEAFAAALAALLA----DPELRRRMAARARAEAERRSWEAFLDN 358 (364)
T ss_pred EcCCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 99 457889999999999 589999999999886656777666554
No 30
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=7.9e-32 Score=269.01 Aligned_cols=347 Identities=20% Similarity=0.206 Sum_probs=245.1
Q ss_pred eEEEEEecCCCCChhHH-HHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011690 6 RACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~-~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (479)
++.++.....|+.+++. ..+..|.+ .||+|.+++..............+++++.++. ... .........+.+.
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~--~~~---~~~~~~~~~~~~~ 75 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDR-DRFEHVVISLTDRGELGEELEEAGVPVYCLGK--RPG---RPDPGALLRLYKL 75 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhh-ccceEEEEecCcchhhhHHHHhcCCeEEEEec--ccc---cccHHHHHHHHHH
Confidence 45555544445444433 33455555 49999999976543332333346888888872 111 1112222233333
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHH
Q 011690 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLR 163 (479)
Q Consensus 85 l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
+.+ .+||+||++.+. ......++.+. .+.|++.+.|+..+... ........+.
T Consensus 76 ~~~------------~~~div~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~---- 129 (365)
T cd03807 76 IRR------------LRPDVVHTWMYH---ADLYGGLAARLAGVPPVIWGIRHSDLDLG-------KKSTRLVARL---- 129 (365)
T ss_pred HHh------------hCCCEEEecccc---ccHHHHHHHHhcCCCcEEEEecCCccccc-------chhHhHHHHH----
Confidence 332 799999999743 23333344444 67888889998763210 1122223333
Q ss_pred HHHHHhhcCCEEEEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccccc
Q 011690 164 IEKYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGM 239 (479)
Q Consensus 164 ~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
++.+.+.+|.++++|+.+.+.+.+. +.+ +.++||+ +...|.+.... +.....
T Consensus 130 -~~~~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~--------------------- 185 (365)
T cd03807 130 -RRLLSSFIPLIVANSAAAAEYHQAI-GYPPKKIVVIPNGVDTERFSPDLDA-RARLRE--------------------- 185 (365)
T ss_pred -HHHhccccCeEEeccHHHHHHHHHc-CCChhheeEeCCCcCHHhcCCcccc-hHHHHH---------------------
Confidence 6777788999999999999988774 443 7899999 65555544321 111111
Q ss_pred CCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccC
Q 011690 240 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
+++++++. .+++++|++.+.||++.+++|+..+.++
T Consensus 186 ----------------~~~~~~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~~--------------------------- 221 (365)
T cd03807 186 ----------------ELGLPEDT-FLIGIVARLHPQKDHATLLRAAALLLKK--------------------------- 221 (365)
T ss_pred ----------------hcCCCCCC-eEEEEecccchhcCHHHHHHHHHHHHHh---------------------------
Confidence 12343333 5899999999999999999999998875
Q ss_pred CCCEEEEEEecCCChHHHHHHHH-HcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 320 YPRLLFIITGKGPDKESYEEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~-~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
.++++|+|+|.|+..+.+++... ++++ ++|.|.|. .+++..+|+.||++++| +..+++|++++|||+||+||
T Consensus 222 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~p---s~~e~~~~~~~Ea~a~g~Pv 295 (365)
T cd03807 222 FPNARLLLVGDGPDRANLELLALKELGLEDKVILLGE---RSDVPALLNALDVFVLS---SLSEGFPNVLLEAMACGLPV 295 (365)
T ss_pred CCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccc---cccHHHHHHhCCEEEeC---CccccCCcHHHHHHhcCCCE
Confidence 78999999999998888888877 7788 68999997 78999999999999998 55588999999999999999
Q ss_pred EEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHH
Q 011690 398 CAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 398 Ias~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
|+++.++..|++.+ +|+++ ++++++++++.++++ +++.++++++++++.. ..++|+...++
T Consensus 296 I~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 359 (365)
T cd03807 296 VATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLA----DPALRQALGEAARERIEENFSIEAMVEA 359 (365)
T ss_pred EEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999977 88888 579999999999999 5788888888887743 34666655543
No 31
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=2.4e-32 Score=275.80 Aligned_cols=266 Identities=22% Similarity=0.215 Sum_probs=211.6
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
..++|+||+|.+. ....+..+.++..++|++++.|+..... ... . +. ++...+.+|.++++
T Consensus 77 ~~~~Dii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~----~~-----~~~~~~~~~~vi~~ 137 (355)
T cd03799 77 RLGIDHIHAHFGT--TPATVAMLASRLGGIPYSFTAHGKDIFR-------SPD-A----ID-----LDEKLARADFVVAI 137 (355)
T ss_pred hcCCCEEEECCCC--chHHHHHHHHHhcCCCEEEEEecccccc-------cCc-h----HH-----HHHHHhhCCEEEEC
Confidence 3789999999853 3344555566666899999998654110 000 0 22 55666889999999
Q ss_pred CHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 179 TQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 179 S~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
|+.+++.+.+.++. ++.++||+ +.+.|.+.. .
T Consensus 138 s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-----~--------------------------------------- 173 (355)
T cd03799 138 SEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-----P--------------------------------------- 173 (355)
T ss_pred CHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-----c---------------------------------------
Confidence 99999999887443 38999999 555554332 0
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
...+.+..++++|++.+.||++.+++|+..+.++ .++++|+++|.|+..
T Consensus 174 ----~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~---------------------------~~~~~l~i~G~~~~~ 222 (355)
T cd03799 174 ----PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDR---------------------------GIDFRLDIVGDGPLR 222 (355)
T ss_pred ----cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhc---------------------------CCCeEEEEEECCccH
Confidence 0112345899999999999999999999998764 689999999999999
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCC-C--CCCCcHHHHHHHhCCCcEEEecCccchhccc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 410 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~--~e~~p~~llEama~G~PVIas~~~~~~e~i~ 410 (479)
+.+++.++++++ ++|.|.|. ++.+++..+|++||++++|+..+ . .|++|++++|||+||+|||+++.++.+|+++
T Consensus 223 ~~~~~~~~~~~~~~~v~~~g~-~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~ 301 (355)
T cd03799 223 DELEALIAELGLEDRVTLLGA-KSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE 301 (355)
T ss_pred HHHHHHHHHcCCCCeEEECCc-CChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh
Confidence 999999999988 78999997 99999999999999999984331 1 1899999999999999999999999999999
Q ss_pred cCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 411 VDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 411 ~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
++.+|+++ .|+++++++|.++++ +++.+..+++++++.. ..++|+...+
T Consensus 302 ~~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~a~~~~~~~~s~~~~~~ 353 (355)
T cd03799 302 DGETGLLVPPGDPEALADAIERLLD----DPELRREMGEAGRARVEEEFDIRKQAA 353 (355)
T ss_pred CCCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 99999999 379999999999999 5888999999998743 4577765543
No 32
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=3e-32 Score=290.86 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=211.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcC---CcEEEEecCchhhh-hh---hh-cCCCch-hH-HHHHHHhHHHHHHHHh
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR---SAFIVDWHNFGYTL-LS---LS-LGRRSH-FV-SIYRCFSVLRIEKYYG 169 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~---~~~ii~~h~~~~~~-~~---~~-~~~~~~-~~-~~~~~~~~~~~e~~~~ 169 (479)
.+||+||+|. +.+..++.+++...+ +|+|+|.|+..+.- .. .. .+.... +. ....++....+.+...
T Consensus 127 ~~~DiiH~hd---w~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 203 (473)
T TIGR02095 127 WQPDVVHAHD---WHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGI 203 (473)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHH
Confidence 6899999999 566666666666554 89999999875311 00 00 000000 00 0000000112245667
Q ss_pred hcCCEEEEeCHHHHHHHHHh-hC-----------CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccc
Q 011690 170 KMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSN 236 (479)
Q Consensus 170 ~~ad~vi~vS~~~~~~l~~~-~~-----------~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
+.||.+++||+.+++++... ++ .++.+|+|| |.+.|.|..... +.. +
T Consensus 204 ~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~---~~~-----------------~ 263 (473)
T TIGR02095 204 VYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPY---LKA-----------------N 263 (473)
T ss_pred HhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcc---ccc-----------------C
Confidence 88999999999999887642 11 248899999 778887643110 000 0
Q ss_pred cccCCcccccchhccccccccccCC--CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhcc
Q 011690 237 AGMEGQKADETIFTSLAGIDVFLKP--NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 314 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (479)
+.......+... ....+..++++. +.+ +|+++||+.++||++.+++|+..+.++
T Consensus 264 ~~~~~~~~k~~~-k~~l~~~~gl~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------- 319 (473)
T TIGR02095 264 YSADDLAGKAEN-KEALQEELGLPVDDDVP-LFGVISRLTQQKGVDLLLAALPELLEL---------------------- 319 (473)
T ss_pred cCccchhhhhhh-HHHHHHHcCCCccCCCC-EEEEEecCccccChHHHHHHHHHHHHc----------------------
Confidence 000000000000 000122334543 454 899999999999999999999998753
Q ss_pred CcccCCCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHh
Q 011690 315 GKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 392 (479)
Q Consensus 315 ~~~~~~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama 392 (479)
+++|+|+|+|+ ..+.+++.+++++ .++.|.+. .+.+++..+|++||++++| |..|++|++++|||+
T Consensus 320 -------~~~lvi~G~g~~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~~~~~~~~aDv~l~p---S~~E~~gl~~lEAma 387 (473)
T TIGR02095 320 -------GGQLVVLGTGDPELEEALRELAERYP-GNVRVIIG-YDEALAHLIYAGADFILMP---SRFEPCGLTQLYAMR 387 (473)
T ss_pred -------CcEEEEECCCCHHHHHHHHHHHHHCC-CcEEEEEc-CCHHHHHHHHHhCCEEEeC---CCcCCcHHHHHHHHH
Confidence 49999999995 4566777776654 67888887 7888899999999999999 677999999999999
Q ss_pred CCCcEEEecCccchhccccC------ccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 393 CGLPVCAVSYSCIEELVKVD------KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 393 ~G~PVIas~~~~~~e~i~~~------~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
||+|||+++.||..|++.++ .+|+++ .|+++++++|.++++.+..+++.+++|++++.+ ..++|+..-++
T Consensus 388 ~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~ 465 (473)
T TIGR02095 388 YGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQ 465 (473)
T ss_pred CCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHH
Confidence 99999999999999999988 899999 579999999999888444358888999988865 36888776554
No 33
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.6e-31 Score=270.25 Aligned_cols=268 Identities=17% Similarity=0.205 Sum_probs=201.7
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
.+||+||+|.+. ...++.++++. .+.|++++.|+... ... ...+. .+...+.++.++++
T Consensus 78 ~~pdiv~~~~~~---~~~~~~l~~~~~~~~~~v~~~h~~~~---------~~~---~~~~~-----~~~~~~~~~~~~~~ 137 (360)
T cd04951 78 FKPDVVHAHMFH---ANIFARLLRLFLPSPPLICTAHSKNE---------GGR---LRMLA-----YRLTDFLSDLTTNV 137 (360)
T ss_pred cCCCEEEEcccc---hHHHHHHHHhhCCCCcEEEEeeccCc---------hhH---HHHHH-----HHHHhhccCceEEE
Confidence 799999999843 33444444443 46788889997641 111 11122 33444568888999
Q ss_pred CHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 179 TQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 179 S~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
|+...+++.+..+. ++.++||| +...|.+... .+.....
T Consensus 138 s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~-~~~~~~~------------------------------------ 180 (360)
T cd04951 138 SKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPA-RRLKIRN------------------------------------ 180 (360)
T ss_pred cHHHHHHHHhccCCCcccEEEEccccchhhcCcchH-HHHHHHH------------------------------------
Confidence 99999988876433 38899999 6566655432 1122111
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
++++.+++ .+++++|++.+.||++.+++|+..+.++ .|+++|+|+|+|+..
T Consensus 181 -~~~~~~~~-~~~l~~g~~~~~kg~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~~~ 231 (360)
T cd04951 181 -ALGVKNDT-FVILAVGRLVEAKDYPNLLKAFAKLLSD---------------------------YLDIKLLIAGDGPLR 231 (360)
T ss_pred -HcCcCCCC-EEEEEEeeCchhcCcHHHHHHHHHHHhh---------------------------CCCeEEEEEcCCCcH
Confidence 12333444 4899999999999999999999998775 789999999999999
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 413 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~ 413 (479)
+.+++.++++++ ++|.|.|. .+++..+|+.||++++| |..|++|++++|||++|+|||+++.++..|++++
T Consensus 232 ~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~~---s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~-- 303 (360)
T cd04951 232 ATLERLIKALGLSNRVKLLGL---RDDIAAYYNAADLFVLS---SAWEGFGLVVAEAMACELPVVATDAGGVREVVGD-- 303 (360)
T ss_pred HHHHHHHHhcCCCCcEEEecc---cccHHHHHHhhceEEec---ccccCCChHHHHHHHcCCCEEEecCCChhhEecC--
Confidence 999999999888 68999998 68999999999999998 5668899999999999999999999999999976
Q ss_pred cEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 414 NGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 414 ~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
+|+++ +|++++++++.+++++ +++.++.++++.......++|+...++
T Consensus 304 ~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 304 SGLIVPISDPEALANKIDEILKM---SGEERDIIGARRERIVKKFSINSIVQQ 353 (360)
T ss_pred CceEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 67766 7799999999999964 566666666553323346777655443
No 34
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.7e-31 Score=294.98 Aligned_cols=377 Identities=14% Similarity=0.112 Sum_probs=240.7
Q ss_pred HHhhCCC----cEEEEecCCCCC--------cccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH-
Q 011690 28 LARQMSL----EVDVVAYGGSKP--------HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF- 94 (479)
Q Consensus 28 La~~~G~----eV~Vv~~~~~~~--------~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 94 (479)
|++ .|| +|+|+|...... ...+...++++|+++|..+....-++++.. -..++.++..+...+..
T Consensus 300 La~-~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~-k~~l~p~l~~f~~~~~~~ 377 (784)
T TIGR02470 300 IKL-QGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWIS-RFEIWPYLETFAEDAEKE 377 (784)
T ss_pred HHh-cCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccccccC-HHHHHHHHHHHHHHHHHH
Confidence 445 499 778999653311 112233479999999944321101111111 12233334433322222
Q ss_pred HHhh-cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCC-CchhHHHHHHHhHHHHHHHHhhcC
Q 011690 95 LCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRCFSVLRIEKYYGKMA 172 (479)
Q Consensus 95 l~~~-~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~a 172 (479)
+... ..+||+||+|. ..+..++..++...++|.+.+.|..+-.- ....+. .......++.-.....|......|
T Consensus 378 ~~~~~~~~pDlIHahy---~d~glva~lla~~lgVP~v~t~HsL~~~K-~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~A 453 (784)
T TIGR02470 378 ILAELQGKPDLIIGNY---SDGNLVASLLARKLGVTQCTIAHALEKTK-YPDSDIYWQEFEDKYHFSCQFTADLIAMNAA 453 (784)
T ss_pred HHHhcCCCCCEEEECC---CchHHHHHHHHHhcCCCEEEECCcchhhc-ccccccccccchhHHHhhhhhhHHHHHHhcC
Confidence 2212 25799999999 66777888889999999999999875211 000000 000001111110112366778889
Q ss_pred CEEEEeCHHHHHHH---HHhh----------------CC-----eEEEecCC-CCCCCCCCChHHHHH--HHHhhhhccc
Q 011690 173 NGCLCVTQAMQHEL---AQNW----------------GI-----KATVLYDQ-PPEFFHPTSLEEKHE--LFCRLNKILH 225 (479)
Q Consensus 173 d~vi~vS~~~~~~l---~~~~----------------~~-----~~~vi~n~-~~~~f~~~~~~~~~~--~~~~~~~~~~ 225 (479)
|.||+.|..+.... ...| |+ ++.+||+| |.+.|.|.....+.. +...+...
T Consensus 454 D~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~l-- 531 (784)
T TIGR02470 454 DFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEEL-- 531 (784)
T ss_pred CEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhh--
Confidence 99999997553311 1111 22 26899999 878787754322111 10000000
Q ss_pred CCCCccccccccccCCcccccchhccc-ccccccc--CCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCC
Q 011690 226 QPLGVQDCVSNAGMEGQKADETIFTSL-AGIDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDS 302 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~ 302 (479)
.|..- .+..+++ .+++| +|+++||+.+.||++.|++|+..+.+.
T Consensus 532 ----------------------l~~~~~~~~~~G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l---------- 578 (784)
T TIGR02470 532 ----------------------LFSLEDNDEHYGYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKL---------- 578 (784)
T ss_pred ----------------------ccchhhHHHHhCCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhh----------
Confidence 00000 0011222 45666 899999999999999999999887542
Q ss_pred chhhhhHhhhccCcccCCCCEEEEEEecCCC------------hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHH---
Q 011690 303 TNEEVFLKEISDGKQYLYPRLLFIITGKGPD------------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLG--- 366 (479)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~------------~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~--- 366 (479)
.+++.|+|+|+|+. .+.+.+.++++++ ++|.|+|...+..+..++|+
T Consensus 579 -----------------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 579 -----------------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred -----------------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 45789999997642 1356677888998 78999996236667777765
Q ss_pred -cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHH
Q 011690 367 -SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLK 443 (479)
Q Consensus 367 -~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~ 443 (479)
++|++|+| |..|+||++++||||||+|||||+.||+.|+|.++.+|+++ .|++++|++|.++++....|++.++
T Consensus 642 d~adVfV~P---S~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~ 718 (784)
T TIGR02470 642 DTKGIFVQP---ALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQ 718 (784)
T ss_pred ccCcEEEEC---CcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34799999 77899999999999999999999999999999999999999 4699999999998742222789999
Q ss_pred HHHHHHHHhh-hhhchHHHHHHH
Q 011690 444 KLRNGTLEMG-LSARWATEWEEH 465 (479)
Q Consensus 444 ~~~~~~~~~~-~~~~w~~~~~~~ 465 (479)
+|++++++.. ..++|+...+++
T Consensus 719 ~ms~~a~~rV~~~FSW~~~A~~l 741 (784)
T TIGR02470 719 KISQGGLQRIYEKYTWKIYSERL 741 (784)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999988742 467776655543
No 35
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=3.3e-31 Score=262.80 Aligned_cols=276 Identities=24% Similarity=0.368 Sum_probs=214.0
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||++++... .....+.+..++|+++++|+..+..... ........... .++...+.+|.++++|
T Consensus 84 ~~~Dii~~~~~~~~---~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~d~~i~~s 152 (374)
T cd03801 84 ERFDVVHAHDWLAL---LAAALAARLLGIPLVLTVHGLEFGRPGN---ELGLLLKLARA-----LERRALRRADRIIAVS 152 (374)
T ss_pred cCCcEEEEechhHH---HHHHHHHHhcCCcEEEEeccchhhcccc---chhHHHHHHHH-----HHHHHHHhCCEEEEec
Confidence 68999999995433 2222456677899999999876321110 00111122222 3777788999999999
Q ss_pred HHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 180 QAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 180 ~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
+.+.+.+.+.++. ++.++||+ +...+.+.....+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------------------------- 192 (374)
T cd03801 153 EATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRR---------------------------------------- 192 (374)
T ss_pred HHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhh----------------------------------------
Confidence 9999999988776 48999999 655555432100000
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChH
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 335 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~ 335 (479)
... ..+...++++|++.+.||++.+++|+..+.++ .++++|+|+|.|+..+
T Consensus 193 -~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~ 243 (374)
T cd03801 193 -LGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKE---------------------------YPDVRLVIVGDGPLRE 243 (374)
T ss_pred -cCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhh---------------------------cCCeEEEEEeCcHHHH
Confidence 011 22345899999999999999999999998875 6899999999999999
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCcc
Q 011690 336 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 414 (479)
Q Consensus 336 ~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~ 414 (479)
.+++.+++++. ++|.|.|. ++.+++..+++.||++++| +..+++|++++|||++|+|||+++.++..|++.++.+
T Consensus 244 ~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~~---~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~ 319 (374)
T cd03801 244 ELEALAAELGLGDRVTFLGF-VPDEDLPALYAAADVFVLP---SLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGET 319 (374)
T ss_pred HHHHHHHHhCCCcceEEEec-cChhhHHHHHHhcCEEEec---chhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcc
Confidence 99998888888 78999997 9999999999999999999 4448899999999999999999999999999999999
Q ss_pred EEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhhhhchHHHHH
Q 011690 415 GLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWE 463 (479)
Q Consensus 415 G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~ 463 (479)
|+++ .++++++++|.++++ +++.++++++++++ ....++|+...+
T Consensus 320 g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 320 GLLVPPGDPEALAEAILRLLD----DPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred eEEeCCCCHHHHHHHHHHHHc----ChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999 347999999999999 58888999888873 234566654433
No 36
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=3.8e-31 Score=261.83 Aligned_cols=316 Identities=21% Similarity=0.240 Sum_probs=224.8
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 011690 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (479)
Q Consensus 24 ~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~D 103 (479)
.+..|++ .||+|+|++..... ........++++..++. ...............+.+.+. ..+||
T Consensus 22 l~~~L~~-~g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~------------~~~~d 85 (348)
T cd03820 22 LANALAE-KGHEVTIISLDKGE-PPFYELDPKIKVIDLGD--KRDSKLLARFKKLRRLRKLLK------------NNKPD 85 (348)
T ss_pred HHHHHHh-CCCeEEEEecCCCC-CCccccCCccceeeccc--ccccchhccccchHHHHHhhc------------ccCCC
Confidence 3555555 49999999987654 11222345677777662 111101111111222222222 27999
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCC-cEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHH
Q 011690 104 VFLVQNPPSVPTLVAVKWASSLRRS-AFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAM 182 (479)
Q Consensus 104 vI~~~~p~~~~~~~~~~~~~~~~~~-~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 182 (479)
+|+++.++ ....+.....+. |++++.|+...... .. ..... .++.+.+.+|.++++|+.+
T Consensus 86 ~i~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~--~~~~~-----~~~~~~~~~d~ii~~s~~~ 146 (348)
T cd03820 86 VVISFLTS-----LLTFLASLGLKIVKLIVSEHNSPDAYK-------KR--LRRLL-----LRRLLYRRADAVVVLTEED 146 (348)
T ss_pred EEEEcCch-----HHHHHHHHhhccccEEEecCCCccchh-------hh--hHHHH-----HHHHHHhcCCEEEEeCHHH
Confidence 99999954 112222333444 88888887652110 00 01111 2667778999999999999
Q ss_pred HHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCC
Q 011690 183 QHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 261 (479)
Q Consensus 183 ~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (479)
+.......+.++.++||+ +...+.+. ..
T Consensus 147 ~~~~~~~~~~~~~vi~~~~~~~~~~~~---------------------------------------------------~~ 175 (348)
T cd03820 147 RALYYKKFNKNVVVIPNPLPFPPEEPS---------------------------------------------------SD 175 (348)
T ss_pred HHHhhccCCCCeEEecCCcChhhcccc---------------------------------------------------CC
Confidence 733333334459999998 43332221 01
Q ss_pred CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHH
Q 011690 262 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 341 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~ 341 (479)
.....++++|++.+.||++.+++|++.+.++ .|+++|+|+|+|+..+.+++.+
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~---------------------------~~~~~l~i~G~~~~~~~~~~~~ 228 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKK---------------------------HPDWKLRIVGDGPEREALEALI 228 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEeCCCCHHHHHHHH
Confidence 1234899999999999999999999998764 7899999999999999999999
Q ss_pred HHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc-cchhccccCccEEEe-
Q 011690 342 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNGLLF- 418 (479)
Q Consensus 342 ~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~-~~~e~i~~~~~G~l~- 418 (479)
+++++ .+|.|.|. .+++..+|++||++++| +..|++|++++|||+||+|||+++.+ +..+++.++.+|+++
T Consensus 229 ~~~~~~~~v~~~g~---~~~~~~~~~~ad~~i~p---s~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~ 302 (348)
T cd03820 229 KELGLEDRVILLGF---TKNIEEYYAKASIFVLT---SRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVP 302 (348)
T ss_pred HHcCCCCeEEEcCC---cchHHHHHHhCCEEEeC---ccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeC
Confidence 99988 68999997 89999999999999998 55688999999999999999999864 567788777799999
Q ss_pred -CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHH
Q 011690 419 -SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 462 (479)
Q Consensus 419 -~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 462 (479)
.|+++++++|.++++ +++.++.+++++++....++|+...
T Consensus 303 ~~~~~~~~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
T cd03820 303 NGDVEALAEALLRLME----DEELRKRMGANARESAERFSIENII 343 (348)
T ss_pred CCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 467999999999998 6999999999988766667665543
No 37
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-31 Score=275.43 Aligned_cols=259 Identities=15% Similarity=0.194 Sum_probs=193.6
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcE--EEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAF--IVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~--ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
.+||+||+|++ ....++.++++..+.|. +...|... .... ...+ .+ .+.+|.+++
T Consensus 83 ~~~Dii~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~----------~~~~---~~~~-----~~--~~~~d~~i~ 139 (359)
T PRK09922 83 TQPDIVICIDV---ISCLYANKARKKSGKQFKIFSWPHFSL----------DHKK---HAEC-----KK--ITCADYHLA 139 (359)
T ss_pred cCCCEEEEcCH---HHHHHHHHHHHHhCCCCeEEEEecCcc----------cccc---hhhh-----hh--hhcCCEEEE
Confidence 89999999984 33345556666666554 33445321 0000 0001 11 267999999
Q ss_pred eCHHHHHHHHHhhCCe---EEEecCC-CCCCCC-CCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccc
Q 011690 178 VTQAMQHELAQNWGIK---ATVLYDQ-PPEFFH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 252 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
+|+.+++.+.+. +.+ +.+|||+ +.+.|. +.+
T Consensus 140 ~S~~~~~~~~~~-~~~~~ki~vi~N~id~~~~~~~~~------------------------------------------- 175 (359)
T PRK09922 140 ISSGIKEQMMAR-GISAQRISVIYNPVEIKTIIIPPP------------------------------------------- 175 (359)
T ss_pred cCHHHHHHHHHc-CCCHHHEEEEcCCCCHHHccCCCc-------------------------------------------
Confidence 999999998764 654 8999999 433221 211
Q ss_pred cccccccCCCCCeEEEEEecCC--CCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec
Q 011690 253 AGIDVFLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 330 (479)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~g~~~--~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~ 330 (479)
..+.+..++++||+. +.||++.+++|+..+ .++++|+|+|+
T Consensus 176 -------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~------------------------------~~~~~l~ivG~ 218 (359)
T PRK09922 176 -------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQT------------------------------TGEWQLHIIGD 218 (359)
T ss_pred -------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhh------------------------------CCCeEEEEEeC
Confidence 011234789999986 469999999999876 23699999999
Q ss_pred CCChHHHHHHHHHcCC-CcEEEecCCCCc--chHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccch
Q 011690 331 GPDKESYEEKIRRLRL-KRVAFRTMWLSA--EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIE 406 (479)
Q Consensus 331 G~~~~~l~~~~~~~~l-~~V~f~G~~~~~--~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~ 406 (479)
|++.+.+++.++++++ ++|.|+|. ++. +++.++|+.+|++|+| |..|+||++++||||||+|||+|+ .++..
T Consensus 219 g~~~~~l~~~~~~~~l~~~v~f~G~-~~~~~~~~~~~~~~~d~~v~~---s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~ 294 (359)
T PRK09922 219 GSDFEKCKAYSRELGIEQRIIWHGW-QSQPWEVVQQKIKNVSALLLT---SKFEGFPMTLLEAMSYGIPCISSDCMSGPR 294 (359)
T ss_pred CccHHHHHHHHHHcCCCCeEEEecc-cCCcHHHHHHHHhcCcEEEEC---CcccCcChHHHHHHHcCCCEEEeCCCCChH
Confidence 9999999999999998 68999996 643 7899999999999998 667899999999999999999999 89999
Q ss_pred hccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHh
Q 011690 407 ELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSD--VLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 475 (479)
Q Consensus 407 e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 475 (479)
|++.++.+|+++ .|+++++++|.+++++ ++ ..+.++++++++. .+...+.+.++++.+.|
T Consensus 295 eiv~~~~~G~lv~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 295 DIIKPGLNGELYTPGNIDEFVGKLNKVISG----EVKYQHDAIPNSIERFY-----EVLYFKNLNNALFSKLQ 358 (359)
T ss_pred HHccCCCceEEECCCCHHHHHHHHHHHHhC----cccCCHHHHHHHHHHhh-----HHHHHHHHHHHHHHHhc
Confidence 999999999998 6799999999999995 44 3455666666643 23445566777776665
No 38
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=8.3e-31 Score=264.02 Aligned_cols=271 Identities=20% Similarity=0.223 Sum_probs=198.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHH---HhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWAS---SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCL 176 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~---~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 176 (479)
.+||+||++....+........+. ...++|+|++.|+.... ... ....++ ++.+.+.+|.++
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------~~~---~~~~~~-----~~~~~~~~d~ii 139 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLH-------EPR---PGDRAL-----LRLLLRRADAVI 139 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcc-------ccc---hhhhHH-----HHHHHhcCCEEE
Confidence 799999998732222112222222 33789999999997200 011 112233 566778899999
Q ss_pred EeC-HHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 177 CVT-QAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 177 ~vS-~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
++| +..++.+...+..++.++||+ +...+.+.... .. .
T Consensus 140 ~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~----~---------------------------------- 179 (366)
T cd03822 140 VMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL--KA----L---------------------------------- 179 (366)
T ss_pred EeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh--Hh----h----------------------------------
Confidence 996 444444333322469999999 54444333211 11 0
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
....+ ...++++|++.+.||++.+++|+..+.++ .|+++|+|+|+|+..
T Consensus 180 ---~~~~~-~~~i~~~G~~~~~K~~~~ll~a~~~~~~~---------------------------~~~~~l~i~G~~~~~ 228 (366)
T cd03822 180 ---GGLDG-RPVLLTFGLLRPYKGLELLLEALPLLVAK---------------------------HPDVRLLVAGETHPD 228 (366)
T ss_pred ---cCCCC-CeEEEEEeeccCCCCHHHHHHHHHHHHhh---------------------------CCCeEEEEeccCccc
Confidence 11122 35899999999999999999999999875 789999999988654
Q ss_pred HHHHH-----HHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCC--CCcHHHHHHHhCCCcEEEecCccch
Q 011690 335 ESYEE-----KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL--DLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 335 ~~l~~-----~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e--~~p~~llEama~G~PVIas~~~~~~ 406 (479)
..... +++++++ ++|.|.|.|++.+++..+|+.||++++| +..+ ++|++++|||+||+|||+++.++ .
T Consensus 229 ~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~p---s~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~ 304 (366)
T cd03822 229 LERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLP---YRSADQTQSGVLAYAIGFGKPVISTPVGH-A 304 (366)
T ss_pred hhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEec---ccccccccchHHHHHHHcCCCEEecCCCC-h
Confidence 43332 3788888 7899999779999999999999999999 5556 89999999999999999999999 6
Q ss_pred hccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 407 ELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 407 e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
+.+.++.+|+++ .|+++++++|..+++ +++.++++++++++....++|+...++
T Consensus 305 ~~i~~~~~g~~~~~~d~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~ 360 (366)
T cd03822 305 EEVLDGGTGLLVPPGDPAALAEAIRRLLA----DPELAQALRARAREYARAMSWERVAER 360 (366)
T ss_pred heeeeCCCcEEEcCCCHHHHHHHHHHHHc----ChHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 777788899998 569999999999999 588899999999887656777655443
No 39
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.5e-31 Score=278.73 Aligned_cols=352 Identities=13% Similarity=0.098 Sum_probs=227.4
Q ss_pred CCCcceEEEEEecCC---CC-ChhHHHHHHHHHhhCC-CcEEEEecCCCCCc------------------ccccCCCCeE
Q 011690 1 MGRRGRACVVVLGDL---GR-SPRMQYQALSLARQMS-LEVDVVAYGGSKPH------------------AAILEHPSIH 57 (479)
Q Consensus 1 m~~~~~~~i~~~~~~---g~-~~r~~~~a~~La~~~G-~eV~Vv~~~~~~~~------------------~~~~~~~gi~ 57 (479)
|.+++++.|+..+.. ++ +--+...+..|+++ | |+|+||++...... ..+.++.+-+
T Consensus 1 ~~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~-G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 1 MQKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD-GDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc-CCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCe
Confidence 566778888886544 33 24456678889886 9 79999998543110 0011122345
Q ss_pred EEEeecCCCCCCCCCc-h------hHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcE
Q 011690 58 IHTMTQWPTIPRGLPK-V------LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF 130 (479)
Q Consensus 58 i~~~~~~~~~~~~~~~-~------~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ 130 (479)
+.+++..+.+ .++. + ......+.+.+.. .+||+||+++|..+...-.+...++..+. +
T Consensus 80 v~r~~s~~~p--~yp~r~~~~~r~~~~~~~i~~~l~~------------~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-v 144 (462)
T PLN02846 80 ISFLPKFSIK--FYPGKFSTDKRSILPVGDISETIPD------------EEADIAVLEEPEHLTWYHHGKRWKTKFRL-V 144 (462)
T ss_pred EEEecccccc--cCcccccccccccCChHHHHHHHHh------------cCCCEEEEcCchhhhhHHHHHHHHhcCCc-E
Confidence 6666632221 1221 0 0011223333333 79999999998655432113333333343 6
Q ss_pred EEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhh-cCCEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCC
Q 011690 131 IVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGK-MANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPT 208 (479)
Q Consensus 131 ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~ 208 (479)
|.++|.......... + ..........+ +.+++.+ ++|.+++.|..+++ +.+. ..+..+| +.++|.+.
T Consensus 145 V~tyHT~y~~Y~~~~-~-~g~~~~~l~~~----~~~~~~r~~~d~vi~pS~~~~~-l~~~----~i~~v~GVd~~~f~~~ 213 (462)
T PLN02846 145 IGIVHTNYLEYVKRE-K-NGRVKAFLLKY----INSWVVDIYCHKVIRLSAATQD-YPRS----IICNVHGVNPKFLEIG 213 (462)
T ss_pred EEEECCChHHHHHHh-c-cchHHHHHHHH----HHHHHHHHhcCEEEccCHHHHH-HhhC----EEecCceechhhcCCC
Confidence 668997432211100 0 00111111111 1333322 38999999987766 4332 3334578 77788766
Q ss_pred ChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCC-CeEEEEEecCCCCCCHHHHHHHHH
Q 011690 209 SLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR-PALVVSSTSWTPDEDFGILLEAAL 287 (479)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~g~~~~~K~~~~lieA~~ 287 (479)
....+.. ....+. ...++|+||+.++||++.||+|++
T Consensus 214 ~~~~~~~------------------------------------------~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~ 251 (462)
T PLN02846 214 KLKLEQQ------------------------------------------KNGEQAFTKGAYYIGKMVWSKGYKELLKLLH 251 (462)
T ss_pred cccHhhh------------------------------------------cCCCCCcceEEEEEecCcccCCHHHHHHHHH
Confidence 4221110 001111 126889999999999999999999
Q ss_pred HhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHc
Q 011690 288 MYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 367 (479)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~ 367 (479)
.+.++ .|+++|+|+|+||+++.+++.+++++++...|.|. .+ ..++++.
T Consensus 252 ~l~~~---------------------------~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~-~~---~~~~~~~ 300 (462)
T PLN02846 252 KHQKE---------------------------LSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR-DH---ADPLFHD 300 (462)
T ss_pred HHHhh---------------------------CCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC-CC---HHHHHHh
Confidence 98765 78999999999999999999999998854347775 43 3479999
Q ss_pred CCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011690 368 ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRN 447 (479)
Q Consensus 368 adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~ 447 (479)
+|+||+| |..|++|++++||||||+|||+++.++ .+++.++.+|++++|.+++++++.+++++ +++ .++.
T Consensus 301 ~DvFv~p---S~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~~~~~~a~ai~~~l~~---~~~---~~~~ 370 (462)
T PLN02846 301 YKVFLNP---STTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYDDGKGFVRATLKALAE---EPA---PLTD 370 (462)
T ss_pred CCEEEEC---CCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecCCHHHHHHHHHHHHcc---Cch---hHHH
Confidence 9999999 778999999999999999999999987 49999999999999999999999999985 232 2233
Q ss_pred HHHHhhhhhchHHHHHHH
Q 011690 448 GTLEMGLSARWATEWEEH 465 (479)
Q Consensus 448 ~~~~~~~~~~w~~~~~~~ 465 (479)
.+++ .++|+...++.
T Consensus 371 ~a~~---~~SWe~~~~~l 385 (462)
T PLN02846 371 AQRH---ELSWEAATERF 385 (462)
T ss_pred HHHH---hCCHHHHHHHH
Confidence 3444 67777666553
No 40
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=9.2e-31 Score=280.40 Aligned_cols=310 Identities=14% Similarity=0.146 Sum_probs=210.8
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHH--hcCCcEEEEecCchhhh-hhh----hcCCCchhHH--HHHHHhHHHHHHHHhh
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTL-LSL----SLGRRSHFVS--IYRCFSVLRIEKYYGK 170 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~--~~~~~~ii~~h~~~~~~-~~~----~~~~~~~~~~--~~~~~~~~~~e~~~~~ 170 (479)
.+|||||+|. +.+.++..+++. ..++|+|+|.|+..+.- ... ..+....... ...++......+...+
T Consensus 132 ~~pDIiH~Hd---w~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~ 208 (485)
T PRK14099 132 FVPDIVHAHD---WQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ 208 (485)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH
Confidence 6899999999 655665555543 24679999999975321 000 0000000000 0011000112556678
Q ss_pred cCCEEEEeCHHHHHHHHHhh------------CCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccc
Q 011690 171 MANGCLCVTQAMQHELAQNW------------GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNA 237 (479)
Q Consensus 171 ~ad~vi~vS~~~~~~l~~~~------------~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
.||.|+++|+..++++.+.+ ..++.+|+|| |.+.|.|..... +..++.
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~---~~~~~~---------------- 269 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDEL---IAATYD---------------- 269 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccch---hhhcCC----------------
Confidence 89999999999999887532 1248999999 878887754211 000000
Q ss_pred ccCCcccccchhccccccccccCCC-CCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCc
Q 011690 238 GMEGQKADETIFTSLAGIDVFLKPN-RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 316 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
...-..+. .-....+..++++.+ ...+++++||+.++||++.+++|+..+.+
T Consensus 270 -~~~~~~k~-~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~------------------------- 322 (485)
T PRK14099 270 -VETLAARA-ANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLG------------------------- 322 (485)
T ss_pred -hhHHHhHH-HhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHh-------------------------
Confidence 00000000 000001123345432 22378899999999999999999998864
Q ss_pred ccCCCCEEEEEEecCC--ChHHHHHHHHHcCCCcE-EEecCCCCcchHHHHH-HcCCEEEEcccCCCCCCCcHHHHHHHh
Q 011690 317 QYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRV-AFRTMWLSAEDYPLLL-GSADLGVCLHTSSSGLDLPMKVVDMFG 392 (479)
Q Consensus 317 ~~~~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V-~f~G~~~~~~~~~~~l-~~adi~v~p~~~s~~e~~p~~llEama 392 (479)
.+++|+|+|+|+ ..+.+++++++++ .++ .|+|. .+++..+| ++||++|+| |..|+||++++|||+
T Consensus 323 ----~~~~lvivG~G~~~~~~~l~~l~~~~~-~~v~~~~G~---~~~l~~~~~a~aDifv~P---S~~E~fGl~~lEAma 391 (485)
T PRK14099 323 ----EGAQLALLGSGDAELEARFRAAAQAYP-GQIGVVIGY---DEALAHLIQAGADALLVP---SRFEPCGLTQLCALR 391 (485)
T ss_pred ----cCcEEEEEecCCHHHHHHHHHHHHHCC-CCEEEEeCC---CHHHHHHHHhcCCEEEEC---CccCCCcHHHHHHHH
Confidence 268999999986 3567777777764 444 78997 88999987 569999999 677999999999999
Q ss_pred CCCcEEEecCccchhccccC---------ccEEEe--CCHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHhhhhhch
Q 011690 393 CGLPVCAVSYSCIEELVKVD---------KNGLLF--SSSSELADQLLM---LFKGFPDDSDVLKKLRNGTLEMGLSARW 458 (479)
Q Consensus 393 ~G~PVIas~~~~~~e~i~~~---------~~G~l~--~~~~~la~~l~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~w 458 (479)
||+|+|+++.||.+|+|.++ .+|+++ .|+++|+++|.+ +++ +++.+++|++++.+ ..++|
T Consensus 392 ~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~----d~~~~~~l~~~~~~--~~fSw 465 (485)
T PRK14099 392 YGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA----DPVAWRRLQRNGMT--TDVSW 465 (485)
T ss_pred CCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc----CHHHHHHHHHHhhh--hcCCh
Confidence 99988889999999999775 689999 579999999997 555 68899999998865 47899
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011690 459 ATEWEEHAKPLITEVISQ 476 (479)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~ 476 (479)
+..-+++ ..++.+++.+
T Consensus 466 ~~~a~~y-~~lY~~l~~~ 482 (485)
T PRK14099 466 RNPAQHY-AALYRSLVAE 482 (485)
T ss_pred HHHHHHH-HHHHHHHHhh
Confidence 8887654 5677776654
No 41
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=1.3e-30 Score=261.27 Aligned_cols=279 Identities=19% Similarity=0.232 Sum_probs=206.6
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
..++|+||+++++......+.. ..+..++|++++.|+....... ......+.... ...++...+.++.++++
T Consensus 85 ~~~~dii~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~i~~~ 156 (375)
T cd03821 85 IREADIVHVHGLWSYPSLAAAR-AARKYGIPYVVSPHGMLDPWAL----PHKALKKRLAW---FLFERRLLQAAAAVHAT 156 (375)
T ss_pred CCCCCEEEEecccchHHHHHHH-HHHHhCCCEEEEcccccccccc----ccchhhhHHHH---HHHHHHHHhcCCEEEEC
Confidence 3689999999865444443333 3345689999999976422110 01111111111 12266677889999999
Q ss_pred CHHHHHHHHHhh-CCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 179 TQAMQHELAQNW-GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 179 S~~~~~~l~~~~-~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
|+.......... ..++.++||+ +.+.|.+...... ...
T Consensus 157 s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~------------------------------------- 196 (375)
T cd03821 157 SEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGR---RRK------------------------------------- 196 (375)
T ss_pred CHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhh---hhh-------------------------------------
Confidence 977776665542 2348999999 6666655432111 111
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC--Ch
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DK 334 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~--~~ 334 (479)
.....++ ..++++|++.+.||++.+++|+..+.++ +++++|+++|.|+ ..
T Consensus 197 ~~~~~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~~~~~~~ 248 (375)
T cd03821 197 FPILPDK-RIILFLGRLHPKKGLDLLIEAFAKLAER---------------------------FPDWHLVIAGPDEGGYR 248 (375)
T ss_pred ccCCCCC-cEEEEEeCcchhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEECCCCcchH
Confidence 1223334 4899999999999999999999999875 7899999999764 34
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 413 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~ 413 (479)
+.++..++++++ ++|.|+|. ++.+++..+|++||++++| +..|++|++++|||+||+|||+++.++..|++.+ .
T Consensus 249 ~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adv~v~p---s~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~ 323 (375)
T cd03821 249 AELKQIAAALGLEDRVTFTGM-LYGEDKAAALADADLFVLP---SHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-G 323 (375)
T ss_pred HHHHHHHHhcCccceEEEcCC-CChHHHHHHHhhCCEEEec---cccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-C
Confidence 455555678888 78999996 9999999999999999998 6568999999999999999999999999999988 8
Q ss_pred cEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hhhhchHHHH
Q 011690 414 NGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEW 462 (479)
Q Consensus 414 ~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~ 462 (479)
+|++. .+.++++++|.++++ +++.++.+++++++. ...++|+..-
T Consensus 324 ~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~ 370 (375)
T cd03821 324 CGWVVDDDVDALAAALRRALE----LPQRLKAMGENGRALVEERFSWTAIA 370 (375)
T ss_pred ceEEeCCChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 89998 456999999999999 578899999998885 4566665443
No 42
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.1e-31 Score=279.39 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=185.5
Q ss_pred HHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe--EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccccc
Q 011690 163 RIEKYYGKMANGCLCVTQAMQHELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGM 239 (479)
Q Consensus 163 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~--~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
.++++..+.||.++++|+..++.+.+.|+.+ +.++||+ +.+.|...+..
T Consensus 212 ~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~---------------------------- 263 (463)
T PLN02949 212 WMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLE---------------------------- 263 (463)
T ss_pred HHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCcc----------------------------
Confidence 3577777899999999999999998877653 7889998 43333211100
Q ss_pred CCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccC
Q 011690 240 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 319 (479)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
..+++ ..++++||+.++||++.+|+|+..+.+++. ..
T Consensus 264 -------------------~~~~~-~~il~vGR~~~~Kg~~llI~A~~~l~~~~~-----------------------~~ 300 (463)
T PLN02949 264 -------------------RSEDP-PYIISVAQFRPEKAHALQLEAFALALEKLD-----------------------AD 300 (463)
T ss_pred -------------------ccCCC-CEEEEEEeeeccCCHHHHHHHHHHHHHhcc-----------------------cc
Confidence 01222 378999999999999999999998865311 12
Q ss_pred CCCEEEEEEecCCC------hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHh
Q 011690 320 YPRLLFIITGKGPD------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 392 (479)
Q Consensus 320 ~p~~~l~IvG~G~~------~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama 392 (479)
.|+++|+|+|+|+. .+++++.++++++ ++|.|+|. ++.+++..+|+.||+++.| +..|+||++++|||+
T Consensus 301 ~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~-v~~~el~~ll~~a~~~v~~---s~~E~FGivvlEAMA 376 (463)
T PLN02949 301 VPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKN-VSYRDLVRLLGGAVAGLHS---MIDEHFGISVVEYMA 376 (463)
T ss_pred CCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCC-CCHHHHHHHHHhCcEEEeC---CccCCCChHHHHHHH
Confidence 57899999998743 2568889999999 68999997 9999999999999999987 678999999999999
Q ss_pred CCCcEEEecCccc-hhcccc---CccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHH
Q 011690 393 CGLPVCAVSYSCI-EELVKV---DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKP 468 (479)
Q Consensus 393 ~G~PVIas~~~~~-~e~i~~---~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 468 (479)
||+|||+++.||. .|++.+ +.+|++++|++++|++|.+++++ +++.+++|++++++....++|+...++. .+
T Consensus 377 ~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~---~~~~r~~m~~~ar~~~~~FS~e~~~~~~-~~ 452 (463)
T PLN02949 377 AGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRM---RETERLEIAAAARKRANRFSEQRFNEDF-KD 452 (463)
T ss_pred cCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCHHHHHHHH-HH
Confidence 9999999998886 477765 67899999999999999999985 5788889999988876678887766553 33
Q ss_pred HHHHHHh
Q 011690 469 LITEVIS 475 (479)
Q Consensus 469 ~~~~~~~ 475 (479)
.+++++.
T Consensus 453 ~i~~l~~ 459 (463)
T PLN02949 453 AIRPILN 459 (463)
T ss_pred HHHHHHh
Confidence 4444443
No 43
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=6.5e-31 Score=271.15 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=194.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+|++.. ..+ ..+.+..++|+|+++|..... .. ...++ + .+.+.+.+|.+++.|
T Consensus 84 ~~~Dvv~~h~~~~---~~~-~~~~~~~~~~~i~~~H~~~~~--------~~--~~~~~-~-----~~~~~~~~d~~i~~~ 143 (372)
T cd03792 84 LDADVVVIHDPQP---LAL-PLFKKKRGRPWIWRCHIDLSS--------PN--RRVWD-F-----LQPYIEDYDAAVFHL 143 (372)
T ss_pred CCCCEEEECCCCc---hhH-HHhhhcCCCeEEEEeeeecCC--------Cc--HHHHH-H-----HHHHHHhCCEEeecH
Confidence 6899999999642 111 222233488989899975311 11 11222 2 234556789988877
Q ss_pred HHHHHHHHHhhCCeEEEecCC-CCCC-CC-CCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIKATVLYDQ-PPEF-FH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~~~vi~n~-~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
.. .....++.+..++||| +... +. +...........+
T Consensus 144 ~~---~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~------------------------------------- 183 (372)
T cd03792 144 PE---YVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEK------------------------------------- 183 (372)
T ss_pred HH---hcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHH-------------------------------------
Confidence 32 2222223234499999 5432 21 1122222222222
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh--
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-- 334 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~-- 334 (479)
+++.++++ +++++||+.+.||++.+++|++.+.++ .|+++|+|+|+|+..
T Consensus 184 ~~~~~~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~ 235 (372)
T cd03792 184 YGIDPERP-YITQVSRFDPWKDPFGVIDAYRKVKER---------------------------VPDPQLVLVGSGATDDP 235 (372)
T ss_pred hCCCCCCc-EEEEEeccccccCcHHHHHHHHHHHhh---------------------------CCCCEEEEEeCCCCCCc
Confidence 23445555 899999999999999999999998764 689999999999653
Q ss_pred ---HHHHHHHHHcCC-CcEEEecCCC--CcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhc
Q 011690 335 ---ESYEEKIRRLRL-KRVAFRTMWL--SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 408 (479)
Q Consensus 335 ---~~l~~~~~~~~l-~~V~f~G~~~--~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~ 408 (479)
+.+++..++.++ ++|.|.|. . +.+++..+|++||++++| |..|+||++++|||+||+|||+|+.++..++
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~ad~~v~~---s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~ 311 (372)
T cd03792 236 EGWIVYEEVLEYAEGDPDIHVLTL-PPVSDLEVNALQRASTVVLQK---SIREGFGLTVTEALWKGKPVIAGPVGGIPLQ 311 (372)
T ss_pred hhHHHHHHHHHHhCCCCCeEEEec-CCCCHHHHHHHHHhCeEEEeC---CCccCCCHHHHHHHHcCCCEEEcCCCCchhh
Confidence 234555545666 68999996 5 789999999999999998 6789999999999999999999999999999
Q ss_pred cccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHH
Q 011690 409 VKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 409 i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
+.++.+|+++++.++++++|.++++ +++.+++|++++++.. ..++|+..-++
T Consensus 312 i~~~~~g~~~~~~~~~a~~i~~ll~----~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 364 (372)
T cd03792 312 IEDGETGFLVDTVEEAAVRILYLLR----DPELRRKMGANAREHVRENFLITRHLKD 364 (372)
T ss_pred cccCCceEEeCCcHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999999999999999999998 5889999999998853 46777655443
No 44
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.5e-30 Score=286.00 Aligned_cols=314 Identities=16% Similarity=0.176 Sum_probs=214.9
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHH------hcCCcEEEEecCchhhhhh----hh-cCCC-chh---HHHHHHHhHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLS----LS-LGRR-SHF---VSIYRCFSVLRI 164 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~------~~~~~~ii~~h~~~~~~~~----~~-~~~~-~~~---~~~~~~~~~~~~ 164 (479)
.+|||||+|+ +.+.+++.++.. ..++|+|+|+|+..|.-.. +. .+-. ..+ ..+-..+ ..++
T Consensus 609 ~~PDIIH~HD---W~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~-~~~i 684 (977)
T PLN02939 609 KKPDIIHCHD---WQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNA-HGRI 684 (977)
T ss_pred CCCCEEEECC---ccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhcc-CCch
Confidence 6899999999 666554322221 2468999999998642100 00 0000 000 0000000 0001
Q ss_pred --HHHHhhcCCEEEEeCHHHHHHHHHhhC-----------CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCc
Q 011690 165 --EKYYGKMANGCLCVTQAMQHELAQNWG-----------IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGV 230 (479)
Q Consensus 165 --e~~~~~~ad~vi~vS~~~~~~l~~~~~-----------~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
-+.-...||.|++||+..++++...+| .++.+|+|| |.+.|.|..... +...+...
T Consensus 685 N~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~---L~~~Ys~~------- 754 (977)
T PLN02939 685 NVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRF---LKVQYNAN------- 754 (977)
T ss_pred HHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccc---cccccChh-------
Confidence 122223699999999999999876332 137899999 888888764110 00000000
Q ss_pred cccccccccCCcccccchhccccccccccCC---CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhh
Q 011690 231 QDCVSNAGMEGQKADETIFTSLAGIDVFLKP---NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEV 307 (479)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~ 307 (479)
+ +.+-...... .+..+++++ +.| +|+++||+.++||++.+++|+..+.+
T Consensus 755 -d------l~GK~~nK~a----LRkelGL~~~d~d~p-LIg~VGRL~~QKGiDlLleA~~~Ll~---------------- 806 (977)
T PLN02939 755 -D------LQGKAANKAA----LRKQLGLSSADASQP-LVGCITRLVPQKGVHLIRHAIYKTAE---------------- 806 (977)
T ss_pred -h------hhhhhhhhHH----HHHHhCCCcccccce-EEEEeecCCcccChHHHHHHHHHHhh----------------
Confidence 0 0000000000 223455653 345 89999999999999999999987753
Q ss_pred hHhhhccCcccCCCCEEEEEEecCCCh---HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCC
Q 011690 308 FLKEISDGKQYLYPRLLFIITGKGPDK---ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDL 383 (479)
Q Consensus 308 ~~~~~~~~~~~~~p~~~l~IvG~G~~~---~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~ 383 (479)
++++|+|+|+|+.. +.+++.+++++. ++|.|+|. ++.+....+|++||++|+| |..|+|
T Consensus 807 -------------~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~-~de~lah~IYAaADIFLmP---Sr~EPf 869 (977)
T PLN02939 807 -------------LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILK-YDEALSHSIYAASDMFIIP---SMFEPC 869 (977)
T ss_pred -------------cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEec-cCHHHHHHHHHhCCEEEEC---CCccCC
Confidence 36899999999763 677888888887 68999997 7777778999999999999 778999
Q ss_pred cHHHHHHHhCCCcEEEecCccchhcccc---------CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 384 PMKVVDMFGCGLPVCAVSYSCIEELVKV---------DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 384 p~~llEama~G~PVIas~~~~~~e~i~~---------~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
|++++|||+||+|+|+++.||..|+|.+ +.+|+++ .|+++|+++|.+++..+..+++.++.|+.++..
T Consensus 870 GLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~- 948 (977)
T PLN02939 870 GLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMN- 948 (977)
T ss_pred cHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-
Confidence 9999999999999999999999998865 5789999 579999999999887444468899999887654
Q ss_pred hhhhchHHHHHHHHHHHHHHHHh
Q 011690 453 GLSARWATEWEEHAKPLITEVIS 475 (479)
Q Consensus 453 ~~~~~w~~~~~~~~~~~~~~~~~ 475 (479)
..++|+...++ ...+|.+++.
T Consensus 949 -~dFSWe~~A~q-YeeLY~~ll~ 969 (977)
T PLN02939 949 -IDFSWDSSASQ-YEELYQRAVA 969 (977)
T ss_pred -hcCCHHHHHHH-HHHHHHHHHH
Confidence 47899888765 3466666654
No 45
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=8.4e-31 Score=263.86 Aligned_cols=272 Identities=21% Similarity=0.262 Sum_probs=206.7
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||++++..... +..++|+|+++|+..+....... .......++.+ ++...+.+|.++++|
T Consensus 84 ~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~d~~i~~s 148 (365)
T cd03809 84 LGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPEYF--SPGFRRYFRRL-----LRRALRRADAIITVS 148 (365)
T ss_pred cCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcccC--CHHHHHHHHHH-----HHHHHHHcCEEEEcc
Confidence 7899999999543322 56789999999987532111000 11112233333 777888999999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
+.+++.+.+.++.+ +.++||+ +...+.+..... . .+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~--~~~----------------------------------- 189 (365)
T cd03809 149 EATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE--V--LRA----------------------------------- 189 (365)
T ss_pred HHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH--H--HHH-----------------------------------
Confidence 99999999887743 8999999 655555543211 0 010
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC-h
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-K 334 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~-~ 334 (479)
....+ +..++++|++.+.||++.+++|+..+.++ .++++|+++|.++. .
T Consensus 190 --~~~~~-~~~i~~~G~~~~~K~~~~~l~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~ 239 (365)
T cd03809 190 --LYLLP-RPYFLYVGTIEPRKNLERLLEAFARLPAK---------------------------GPDPKLVIVGKRGWLN 239 (365)
T ss_pred --hcCCC-CCeEEEeCCCccccCHHHHHHHHHHHHHh---------------------------cCCCCEEEecCCcccc
Confidence 11223 34899999999999999999999999875 66899999997643 3
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 413 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~ 413 (479)
+...+.+++++. ++|.++|. ++.+++..+|++||++++| +..|++|.+++|||++|+|||+++.++..|++. .
T Consensus 240 ~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~p---s~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~--~ 313 (365)
T cd03809 240 EELLARLRELGLGDRVRFLGY-VSDEELAALYRGARAFVFP---SLYEGFGLPVLEAMACGTPVIASNISSLPEVAG--D 313 (365)
T ss_pred HHHHHHHHHcCCCCeEEECCC-CChhHHHHHHhhhhhhccc---chhccCCCCHHHHhcCCCcEEecCCCCccceec--C
Confidence 334444456677 78999996 9999999999999999998 556889999999999999999999999999984 4
Q ss_pred cEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 011690 414 NGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 465 (479)
Q Consensus 414 ~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 465 (479)
+|+++ .++++++++|.++++ +++.+..+++++++....++|+...++.
T Consensus 314 ~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 314 AALYFDPLDPEALAAAIERLLE----DPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57766 679999999999988 6999999999998766678777666544
No 46
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=4.1e-30 Score=256.24 Aligned_cols=271 Identities=24% Similarity=0.327 Sum_probs=207.5
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
..+||+|+++.+ .+...+.....+..++|++++.|+....... .. ...+.. ++...+.+|.++++
T Consensus 91 ~~~~dii~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~--~~~~~~-----~~~~~~~~d~ii~~ 155 (377)
T cd03798 91 RFRPDLIHAHFA--YPDGFAAALLKRKLGIPLVVTLHGSDVNLLP------RK--RLLRAL-----LRRALRRADAVIAV 155 (377)
T ss_pred cCCCCEEEEecc--chHHHHHHHHHHhcCCCEEEEeecchhcccC------ch--hhHHHH-----HHHHHhcCCeEEeC
Confidence 379999999963 3344455556667788999999987522110 00 122333 66777899999999
Q ss_pred CHHHHHHHHHh--hCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 179 TQAMQHELAQN--WGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 179 S~~~~~~l~~~--~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
|+.+++.+.+. .+.++.+++|+ +...|.+...... .++
T Consensus 156 s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~----------------------------------- 196 (377)
T cd03798 156 SEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA----RKL----------------------------------- 196 (377)
T ss_pred CHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH----Hhc-----------------------------------
Confidence 99999999886 34459999999 6666665542211 110
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChH
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 335 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~ 335 (479)
.. .+.+..++++|++.+.||++.+++|++.+.++ +++++|+|+|.|+..+
T Consensus 197 --~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~---------------------------~~~~~l~i~g~~~~~~ 246 (377)
T cd03798 197 --GL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKK---------------------------RPDVHLVIVGDGPLRE 246 (377)
T ss_pred --cC-CCCceEEEEeccCccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEcCCcchH
Confidence 11 22345899999999999999999999998764 7899999999999999
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCcc
Q 011690 336 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 414 (479)
Q Consensus 336 ~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~ 414 (479)
.+++.++++++ ++|.+.|. ++.+++..++++||++++| +..+++|.+++|||+||+|||+++.++..|++.++.+
T Consensus 247 ~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~~---~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~ 322 (377)
T cd03798 247 ALEALAAELGLEDRVTFLGA-VPHEEVPAYYAAADVFVLP---SLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGEN 322 (377)
T ss_pred HHHHHHHhcCCcceEEEeCC-CCHHHHHHHHHhcCeeecc---hhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcc
Confidence 99999998888 78999997 9999999999999999998 5458899999999999999999999999999999999
Q ss_pred EEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHH
Q 011690 415 GLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 462 (479)
Q Consensus 415 G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 462 (479)
|+++ .++++++++|.+++++ ++. +...++.......++|+...
T Consensus 323 g~~~~~~~~~~l~~~i~~~~~~----~~~-~~~~~~~~~~~~~~s~~~~~ 367 (377)
T cd03798 323 GLLVPPGDPEALAEAILRLLAD----PWL-RLGRAARRRVAERFSWENVA 367 (377)
T ss_pred eeEECCCCHHHHHHHHHHHhcC----cHH-HHhHHHHHHHHHHhhHHHHH
Confidence 9998 5799999999999995 443 22223333323355555443
No 47
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.8e-30 Score=286.93 Aligned_cols=379 Identities=14% Similarity=0.116 Sum_probs=239.5
Q ss_pred HHHHhhCCCcE----EEEecCCCCC--------cccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011690 26 LSLARQMSLEV----DVVAYGGSKP--------HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (479)
Q Consensus 26 ~~La~~~G~eV----~Vv~~~~~~~--------~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 93 (479)
..|+++ ||+| +|+|..-... ...+...++++|.++|.++.. ..+++... -..++.++..+...+.
T Consensus 322 ~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~-~~l~~~i~-ke~l~p~L~~f~~~~~ 398 (815)
T PLN00142 322 LRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEK-GILRKWIS-RFDVWPYLETFAEDAA 398 (815)
T ss_pred HHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCc-cccccccC-HHHHHHHHHHHHHHHH
Confidence 455564 9987 4888632211 112333468999999944311 11211111 1233334444332222
Q ss_pred -HHHhh-cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCC-CchhHHHHHHHhHHHHHHHHhh
Q 011690 94 -FLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRCFSVLRIEKYYGK 170 (479)
Q Consensus 94 -~l~~~-~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~ 170 (479)
.+... ..+||+||.|. +.+..++..++...|+|.+.+.|..+-.-.. ..+. .......++.-.....|.....
T Consensus 399 ~~~~~~~~~~PDlIHaHY---wdsg~vA~~La~~lgVP~v~T~HsL~k~K~~-~~~~~~~~~e~~y~~~~r~~aE~~a~~ 474 (815)
T PLN00142 399 SEILAELQGKPDLIIGNY---SDGNLVASLLAHKLGVTQCTIAHALEKTKYP-DSDIYWKKFDDKYHFSCQFTADLIAMN 474 (815)
T ss_pred HHHHHhcCCCCCEEEECC---ccHHHHHHHHHHHhCCCEEEEcccchhhhcc-ccCCcccccchhhhhhhchHHHHHHHH
Confidence 22111 24699999998 6777888888999999999999987511100 0000 0000111111111124778888
Q ss_pred cCCEEEEeCHHHHHH-------HHHhh------------CC-----eEEEecCC-CCCCCCCCChHHHHHHHHhhhhccc
Q 011690 171 MANGCLCVTQAMQHE-------LAQNW------------GI-----KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILH 225 (479)
Q Consensus 171 ~ad~vi~vS~~~~~~-------l~~~~------------~~-----~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~ 225 (479)
.||.||+.|...... +.... |+ ++.+|++| |...|.|-....+. + ..+....
T Consensus 475 ~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~r-l-~~l~n~I- 551 (815)
T PLN00142 475 HADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKR-L-TSLHPSI- 551 (815)
T ss_pred hhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhh-H-Hhhcccc-
Confidence 999999999777642 11210 22 37899999 77777765422111 0 0000000
Q ss_pred CCCCccccccccccCCcccccchhccc-ccccccc--CCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCC
Q 011690 226 QPLGVQDCVSNAGMEGQKADETIFTSL-AGIDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDS 302 (479)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~ 302 (479)
....|..- .+..++. .+++| +|+++||+.+.||++.||+|+..+.+.
T Consensus 552 -------------------~~~l~~~~~~~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~l---------- 601 (815)
T PLN00142 552 -------------------EELLYSPEQNDEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKRL---------- 601 (815)
T ss_pred -------------------hhhcCChHHHHHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHHh----------
Confidence 00000000 0011222 34455 899999999999999999999988654
Q ss_pred chhhhhHhhhccCcccCCCCEEEEEEecCC------Ch------HHHHHHHHHcCC-CcEEEecCC---CCcchHHHHHH
Q 011690 303 TNEEVFLKEISDGKQYLYPRLLFIITGKGP------DK------ESYEEKIRRLRL-KRVAFRTMW---LSAEDYPLLLG 366 (479)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~------~~------~~l~~~~~~~~l-~~V~f~G~~---~~~~~~~~~l~ 366 (479)
.++++|+|+|+|. +. +.+.+.++++++ ++|.|+|.. .+.+++..+++
T Consensus 602 -----------------~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~ia 664 (815)
T PLN00142 602 -----------------RELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIA 664 (815)
T ss_pred -----------------CCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHH
Confidence 6789999999872 11 236678888999 789999851 23356677666
Q ss_pred -cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHH
Q 011690 367 -SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLK 443 (479)
Q Consensus 367 -~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~ 443 (479)
++|++|+| |..|+||++++||||||+|||||+.||+.|+|.++.+|+++ .|++++|++|.++++..-.|++.++
T Consensus 665 daaDVfVlP---S~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~ 741 (815)
T PLN00142 665 DTKGAFVQP---ALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWN 741 (815)
T ss_pred hhCCEEEeC---CcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 57999999 77899999999999999999999999999999999999999 4699999999876642122799999
Q ss_pred HHHHHHHHhh-hhhchHHHHHH
Q 011690 444 KLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 444 ~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
+|++++++.. ..++|+..-++
T Consensus 742 ~mg~~Ar~rv~e~FSWe~~A~r 763 (815)
T PLN00142 742 KISDAGLQRIYECYTWKIYAER 763 (815)
T ss_pred HHHHHHHHHHHHhCCHHHHHHH
Confidence 9999988743 45666554433
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.1e-30 Score=279.39 Aligned_cols=276 Identities=18% Similarity=0.212 Sum_probs=211.2
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhh--hhcC--CCchhHHHHHHHhHHHHHHHHhhcCCE
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS--LSLG--RRSHFVSIYRCFSVLRIEKYYGKMANG 174 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~e~~~~~~ad~ 174 (479)
..++|++|+|+++ ...+++.++++..++|+|++.|+....-.. .... ....+.+.+..+ +..+++..++.||.
T Consensus 171 ~~~~dviH~~s~~--~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ad~ 247 (475)
T cd03813 171 LPKADVYHAVSTG--YAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRF-FESLGRLAYQAADR 247 (475)
T ss_pred CCCCCEEeccCcc--hHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHH-HHHHHHHHHHhCCE
Confidence 4689999999853 234555667778899999999986421100 0000 011112222222 34458888899999
Q ss_pred EEEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhc
Q 011690 175 CLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 250 (479)
Q Consensus 175 vi~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
++++|+..++.+.+ +|.+ +.+|||| +.+.|.+.... .
T Consensus 248 Ii~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~---~----------------------------------- 288 (475)
T cd03813 248 ITTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA---R----------------------------------- 288 (475)
T ss_pred EEecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc---c-----------------------------------
Confidence 99999999887654 4654 8999999 66666554310 0
Q ss_pred cccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec
Q 011690 251 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~ 330 (479)
. .+.+.+|+++||+.+.||++.+|+|++.+.++ .|+++|+|+|.
T Consensus 289 --------~-~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~IvG~ 332 (475)
T cd03813 289 --------P-EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKK---------------------------IPDAEGWVIGP 332 (475)
T ss_pred --------c-CCCCcEEEEEeccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEECC
Confidence 1 12235899999999999999999999999875 89999999999
Q ss_pred CCC----hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 331 GPD----KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 331 G~~----~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
|+. .+++++.++++++ ++|.|+| .+++.++|+++|++|+| |..|++|++++||||||+|||+|+.|+.
T Consensus 333 g~~~~~~~~e~~~li~~l~l~~~V~f~G----~~~v~~~l~~aDv~vlp---S~~Eg~p~~vlEAma~G~PVVatd~g~~ 405 (475)
T cd03813 333 TDEDPEYAEECRELVESLGLEDNVKFTG----FQNVKEYLPKLDVLVLT---SISEGQPLVILEAMAAGIPVVATDVGSC 405 (475)
T ss_pred CCcChHHHHHHHHHHHHhCCCCeEEEcC----CccHHHHHHhCCEEEeC---chhhcCChHHHHHHHcCCCEEECCCCCh
Confidence 853 3566778888998 7999999 57899999999999998 6678999999999999999999999999
Q ss_pred hhcccc------CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 406 EELVKV------DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 406 ~e~i~~------~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
.|++.+ |.+|+++ .|+++++++|.++++ +++.++++++++++.. ..++|+...+
T Consensus 406 ~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~----~~~~~~~~~~~a~~~v~~~~s~~~~~~ 468 (475)
T cd03813 406 RELIEGADDEALGPAGEVVPPADPEALARAILRLLK----DPELRRAMGEAGRKRVERYYTLERMID 468 (475)
T ss_pred HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999988 5699998 579999999999999 5899999999998743 2345554443
No 49
>PLN02316 synthase/transferase
Probab=100.00 E-value=9e-30 Score=287.01 Aligned_cols=294 Identities=15% Similarity=0.136 Sum_probs=204.8
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh------cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL------RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMAN 173 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~------~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 173 (479)
.+|||||+|. +.+.+++.+++.. .++|+|+|+|+..+.. + . + +.....||
T Consensus 708 ~~PDIIHaHD---W~talva~llk~~~~~~~~~~~p~V~TiHnl~~~~--------n----~---l------k~~l~~AD 763 (1036)
T PLN02316 708 FHPDIIHCHD---WSSAPVAWLFKDHYAHYGLSKARVVFTIHNLEFGA--------N----H---I------GKAMAYAD 763 (1036)
T ss_pred CCCCEEEECC---ChHHHHHHHHHHhhhhhccCCCCEEEEeCCcccch--------h----H---H------HHHHHHCC
Confidence 5899999998 5566666565542 4689999999875210 0 0 1 12336799
Q ss_pred EEEEeCHHHHHHHHHhhC-----CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccc
Q 011690 174 GCLCVTQAMQHELAQNWG-----IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADET 247 (479)
Q Consensus 174 ~vi~vS~~~~~~l~~~~~-----~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
.|++||+..++++..... .++.+|+|| |.+.|.|........ ++.. .+... +-.....
T Consensus 764 ~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~---~y~~--------~~~~~-----gK~~~k~ 827 (1036)
T PLN02316 764 KATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPV---PYTS--------ENVVE-----GKRAAKE 827 (1036)
T ss_pred EEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccc---cCCc--------hhhhh-----hhhhhHH
Confidence 999999999999877533 238999999 877776642100000 0000 00000 0000000
Q ss_pred hhccccccccccCC-CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEE
Q 011690 248 IFTSLAGIDVFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 326 (479)
Q Consensus 248 ~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~ 326 (479)
. .+..++++. +.| +++++||+.++||++.|++|+..+.+ ++++|+
T Consensus 828 ~----Lr~~lGL~~~d~p-lVg~VGRL~~qKGvdlLi~Al~~ll~-----------------------------~~~qlV 873 (1036)
T PLN02316 828 A----LQQRLGLKQADLP-LVGIITRLTHQKGIHLIKHAIWRTLE-----------------------------RNGQVV 873 (1036)
T ss_pred H----HHHHhCCCcccCe-EEEEEeccccccCHHHHHHHHHHHhh-----------------------------cCcEEE
Confidence 0 122345553 455 89999999999999999999998753 268999
Q ss_pred EEecCCC---hHHHHHHHHHcCC---CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 327 ITGKGPD---KESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 327 IvG~G~~---~~~l~~~~~~~~l---~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
|+|+||+ .+.++++++++++ ++|.|.|. .+......+|++||++|+| |..|++|++++|||+||+|+|++
T Consensus 874 IvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~-~de~lah~iyaaADiflmP---S~~EP~GLvqLEAMa~GtppVvs 949 (1036)
T PLN02316 874 LLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLT-YDEPLSHLIYAGADFILVP---SIFEPCGLTQLTAMRYGSIPVVR 949 (1036)
T ss_pred EEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEec-CCHHHHHHHHHhCcEEEeC---CcccCccHHHHHHHHcCCCeEEE
Confidence 9999976 4577888888865 47999987 4333335899999999999 77899999999999999999999
Q ss_pred cCccchhccccC-------------ccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHH
Q 011690 401 SYSCIEELVKVD-------------KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 465 (479)
Q Consensus 401 ~~~~~~e~i~~~-------------~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 465 (479)
+.||++|+|.++ .+|+++ .++++|+.+|.+++..+++.+..+..+++++.+ ..++|+..-.++
T Consensus 950 ~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y 1027 (1036)
T PLN02316 950 KTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDY 1027 (1036)
T ss_pred cCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHH
Confidence 999999999874 689999 469999999999998644334444444444332 368887776553
Q ss_pred HHHHHHHHH
Q 011690 466 AKPLITEVI 474 (479)
Q Consensus 466 ~~~~~~~~~ 474 (479)
..+|.++.
T Consensus 1028 -~~LY~~a~ 1035 (1036)
T PLN02316 1028 -MELYHSAR 1035 (1036)
T ss_pred -HHHHHHHh
Confidence 45665543
No 50
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=4.7e-30 Score=273.35 Aligned_cols=303 Identities=17% Similarity=0.152 Sum_probs=205.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh------cCCcEEEEecCchhhh----hhhh-cCCCc-hhHHH--HHHHhHHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL------RRSAFIVDWHNFGYTL----LSLS-LGRRS-HFVSI--YRCFSVLRIE 165 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~------~~~~~ii~~h~~~~~~----~~~~-~~~~~-~~~~~--~~~~~~~~~e 165 (479)
.+||+||+|+ +.+..+..+++.. .++|+|+|.|+..+.- .... .+... ..... ..+......+
T Consensus 128 ~~pDviH~hd---~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (476)
T cd03791 128 WKPDIIHCHD---WHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFL 204 (476)
T ss_pred CCCcEEEECc---hHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHH
Confidence 6899999999 4555555555444 4899999999975311 0000 00000 00000 0000011336
Q ss_pred HHHhhcCCEEEEeCHHHHHHHHHh---------h---CCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccc
Q 011690 166 KYYGKMANGCLCVTQAMQHELAQN---------W---GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQD 232 (479)
Q Consensus 166 ~~~~~~ad~vi~vS~~~~~~l~~~---------~---~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479)
+...+.||.++++|+.+++.+.+. . ..++.+|+|| +.+.|.|........ .+...
T Consensus 205 ~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~---~~~~~--------- 272 (476)
T cd03791 205 KAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPA---NYSAD--------- 272 (476)
T ss_pred HHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhh---cCCcc---------
Confidence 777789999999999999887641 1 2348999999 778887653211000 00000
Q ss_pred cccccccCCcccccchhccccccccccC--CCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHh
Q 011690 233 CVSNAGMEGQKADETIFTSLAGIDVFLK--PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~ 310 (479)
... .+ ..-....+..++++ ++.+ +++++||+.++||++.+++|+..+.++
T Consensus 273 -----~~~---~~-~~~k~~l~~~~g~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~------------------ 324 (476)
T cd03791 273 -----DLE---GK-AENKAALQEELGLPVDPDAP-LFGFVGRLTEQKGIDLLLEALPELLEL------------------ 324 (476)
T ss_pred -----ccc---cH-HHHHHHHHHHcCCCcCCCCC-EEEEEeeccccccHHHHHHHHHHHHHc------------------
Confidence 000 00 00000011223342 4555 899999999999999999999988753
Q ss_pred hhccCcccCCCCEEEEEEecCCC--hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHH
Q 011690 311 EISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV 388 (479)
Q Consensus 311 ~~~~~~~~~~p~~~l~IvG~G~~--~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ll 388 (479)
+++|+|+|+|+. .+.+++.++++ .++|.|.+. .+.+++..+|+.||++++| |..|++|++++
T Consensus 325 -----------~~~lvi~G~g~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~~~~~~~~~aDv~l~p---S~~E~~gl~~l 388 (476)
T cd03791 325 -----------GGQLVILGSGDPEYEEALRELAARY-PGRVAVLIG-YDEALAHLIYAGADFFLMP---SRFEPCGLTQM 388 (476)
T ss_pred -----------CcEEEEEecCCHHHHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHhCCEEECC---CCCCCCcHHHH
Confidence 399999999853 34566666654 467887766 5677788999999999998 66789999999
Q ss_pred HHHhCCCcEEEecCccchhccccCc------cEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHH
Q 011690 389 DMFGCGLPVCAVSYSCIEELVKVDK------NGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 460 (479)
Q Consensus 389 Eama~G~PVIas~~~~~~e~i~~~~------~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 460 (479)
|||+||+|||+++.||..|++.++. +|+++ .++++++++|.++++.+. +++.+.++++++.+ ..++|+.
T Consensus 389 EAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~~~~~~~--~~fsw~~ 465 (476)
T cd03791 389 YAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYR-DPEAWRKLQRNAMA--QDFSWDR 465 (476)
T ss_pred HHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhc--cCCChHH
Confidence 9999999999999999999999988 99999 469999999999987432 57888888888766 2566665
Q ss_pred HHHH
Q 011690 461 EWEE 464 (479)
Q Consensus 461 ~~~~ 464 (479)
..++
T Consensus 466 ~a~~ 469 (476)
T cd03791 466 SAKE 469 (476)
T ss_pred HHHH
Confidence 5544
No 51
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=3.1e-30 Score=259.08 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=185.0
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+|++... .. +++..++|+|.+.|+..... ..... ......+.++++|
T Consensus 86 ~~~Divh~~~~~~~---~~---~~~~~~~~~v~~~h~~~~~~----------~~~~~----------~~~~~~~~~~~~s 139 (335)
T cd03802 86 GDFDIVHNHSLHLP---LP---FARPLPVPVVTTLHGPPDPE----------LLKLY----------YAARPDVPFVSIS 139 (335)
T ss_pred CCCCEEEecCcccc---hh---hhcccCCCEEEEecCCCCcc----------cchHH----------HhhCcCCeEEEec
Confidence 78999999994322 21 45567899999999876211 11111 1224578899999
Q ss_pred HHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccc
Q 011690 180 QAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 258 (479)
Q Consensus 180 ~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
+..++.+... .++.+|||| +.+.|.+.+
T Consensus 140 ~~~~~~~~~~--~~~~vi~ngvd~~~~~~~~------------------------------------------------- 168 (335)
T cd03802 140 DAQRRPWPPL--PWVATVHNGIDLDDYPFRG------------------------------------------------- 168 (335)
T ss_pred HHHHhhcccc--cccEEecCCcChhhCCCCC-------------------------------------------------
Confidence 9988766443 458999999 666665421
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHH
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 338 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~ 338 (479)
.++ ..++++|++.+.||++.+++|++. ++++|+|+|.|+..+.+.
T Consensus 169 --~~~-~~i~~~Gr~~~~Kg~~~li~~~~~--------------------------------~~~~l~i~G~~~~~~~~~ 213 (335)
T cd03802 169 --PKG-DYLLFLGRISPEKGPHLAIRAARR--------------------------------AGIPLKLAGPVSDPDYFY 213 (335)
T ss_pred --CCC-CEEEEEEeeccccCHHHHHHHHHh--------------------------------cCCeEEEEeCCCCHHHHH
Confidence 112 378999999999999999998653 368999999998888777
Q ss_pred HHHHHcC-C-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEE
Q 011690 339 EKIRRLR-L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 416 (479)
Q Consensus 339 ~~~~~~~-l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~ 416 (479)
..+++.. + ++|.|.|. ++.+++..+++++|++++|+ ...|++|++++||||||+|||+++.++.+|++.++.+|+
T Consensus 214 ~~~~~~~~~~~~v~~~G~-~~~~~~~~~~~~~d~~v~ps--~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~ 290 (335)
T cd03802 214 REIAPELLDGPDIEYLGE-VGGAEKAELLGNARALLFPI--LWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGF 290 (335)
T ss_pred HHHHHhcccCCcEEEeCC-CCHHHHHHHHHhCcEEEeCC--cccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEE
Confidence 7777664 3 78999997 99999999999999999982 246889999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHH
Q 011690 417 LFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 417 l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 464 (479)
+++++++++++|.++.+. + .+..++.+.+ .++|+..-++
T Consensus 291 l~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~---~~s~~~~~~~ 329 (335)
T cd03802 291 LVDSVEELAAAVARADRL----D--RAACRRRAER---RFSAARMVDD 329 (335)
T ss_pred EeCCHHHHHHHHHHHhcc----H--HHHHHHHHHH---hCCHHHHHHH
Confidence 998899999999998763 2 2334444444 5666654443
No 52
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=4.4e-30 Score=273.24 Aligned_cols=281 Identities=13% Similarity=0.127 Sum_probs=206.5
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEE-ecCchhhhhhhhcCCCchhHHHHHHHhHHHHH-HHHhhcCCEEE
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIE-KYYGKMANGCL 176 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~ad~vi 176 (479)
..+||+||+|+ ..+...+.++++..|+|++++ .|.+. +... ......-+... .+ ..+...+| ++
T Consensus 278 ~~rpDIVHt~~---~~a~l~g~laA~lagvpviv~~~h~~~-~~~~-----~r~~~~e~~~~----~~a~~i~~~sd-~v 343 (578)
T PRK15490 278 ERKLDYLSVWQ---DGACLMIALAALIAGVPRIQLGLRGLP-PVVR-----KRLFKPEYEPL----YQALAVVPGVD-FM 343 (578)
T ss_pred HcCCCEEEEcC---cccHHHHHHHHHhcCCCEEEEeecccC-Ccch-----hhHHHHHHHHh----hhhceeEecch-hh
Confidence 38999999999 555566778888899999875 55532 1100 11110101111 01 12234455 77
Q ss_pred EeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccc
Q 011690 177 CVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 252 (479)
Q Consensus 177 ~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (479)
++|..+++.+.+.++.+ +.+|||| +++.|.+..... .....++.
T Consensus 344 ~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~-~~~r~~~~------------------------------- 391 (578)
T PRK15490 344 SNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVP-HKIWQQFT------------------------------- 391 (578)
T ss_pred hccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhh-HHHHHHhh-------------------------------
Confidence 89998888888877765 8999999 777777754211 11111111
Q ss_pred cccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC
Q 011690 253 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~ 332 (479)
.+++++. .+++++||+.+.||+..+++|+..+.++ .|+++|+|+|+|+
T Consensus 392 ----~~l~~~~-~vIg~VgRl~~~Kg~~~LI~A~a~llk~---------------------------~pdirLvIVGdG~ 439 (578)
T PRK15490 392 ----QKTQDAD-TTIGGVFRFVGDKNPFAWIDFAARYLQH---------------------------HPATRFVLVGDGD 439 (578)
T ss_pred ----hccCCCC-cEEEEEEEEehhcCHHHHHHHHHHHHhH---------------------------CCCeEEEEEeCch
Confidence 0122333 3789999999999999999999988765 7899999999999
Q ss_pred ChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcccc
Q 011690 333 DKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV 411 (479)
Q Consensus 333 ~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~ 411 (479)
..+.+++.++++++ ++|.|+|. .+|++.+|+++|++|+| |..|+||++++|||+||+|||+|+.|+.+|++.+
T Consensus 440 ~~eeLk~la~elgL~d~V~FlG~---~~Dv~~~LaaADVfVlP---S~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~d 513 (578)
T PRK15490 440 LRAEAQKRAEQLGILERILFVGA---SRDVGYWLQKMNVFILF---SRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIE 513 (578)
T ss_pred hHHHHHHHHHHcCCCCcEEECCC---hhhHHHHHHhCCEEEEc---ccccCccHHHHHHHHhCCCEEEeCCCCcHHHccc
Confidence 99999999999999 79999997 78999999999999998 6779999999999999999999999999999999
Q ss_pred CccEEEe--CCHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHHHHH
Q 011690 412 DKNGLLF--SSSSELADQLL---MLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 467 (479)
Q Consensus 412 ~~~G~l~--~~~~~la~~l~---~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 467 (479)
+.+|+++ .|++++++.+. .+.+ ..+.+..+++++++.. ..++|+...+++.+
T Consensus 514 G~nG~LVp~~D~~aLa~ai~lA~aL~~----ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~k 571 (578)
T PRK15490 514 GVSGFILDDAQTVNLDQACRYAEKLVN----LWRSRTGICQQTQSFLQERFTVEHMVGTFVK 571 (578)
T ss_pred CCcEEEECCCChhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 9999999 45677777663 3344 2344556777777643 46778777665443
No 53
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=7.8e-30 Score=252.44 Aligned_cols=324 Identities=23% Similarity=0.284 Sum_probs=226.1
Q ss_pred CCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCe---EEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011690 15 LGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSI---HIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM 90 (479)
Q Consensus 15 ~g~~~r-~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi---~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (479)
.|+..+ +...+..|.++ ||+|+|++........... .... ...... ............+.+.+.+
T Consensus 11 ~gG~~~~~~~l~~~l~~~-g~~v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--- 79 (353)
T cd03811 11 GGGAERVLLNLANGLDKR-GYDVTLVVLRDEGDYLELL-PSNVKLIPVRVLK------LKSLRDLLAILRLRRLLRK--- 79 (353)
T ss_pred CCCcchhHHHHHHHHHhc-CceEEEEEcCCCCcccccc-ccchhhhceeeee------cccccchhHHHHHHHHHHh---
Confidence 444444 45556777675 9999999977653321111 1111 111111 0011112222333333333
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhh
Q 011690 91 LLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGK 170 (479)
Q Consensus 91 ~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 170 (479)
.+||+|++++. ....++..+..+. ++|++++.|+....... .... . ... ++...+
T Consensus 80 ---------~~~dii~~~~~--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~----~~~~---~-~~~-----~~~~~~ 134 (353)
T cd03811 80 ---------EKPDVVISHLT--TTPNVLALLAARL-GTKLIVWEHNSLSLELK----RKLR---L-LLL-----IRKLYR 134 (353)
T ss_pred ---------cCCCEEEEcCc--cchhHHHHHHhhc-CCceEEEEcCcchhhhc----cchh---H-HHH-----HHhhcc
Confidence 79999999995 2334444444444 78999999987632111 0000 0 022 667778
Q ss_pred cCCEEEEeCHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCccccc
Q 011690 171 MANGCLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADE 246 (479)
Q Consensus 171 ~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
.+|.++++|+.+++.+.+.++. ++.++||+ +.+.+.+...... .
T Consensus 135 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-----~--------------------------- 182 (353)
T cd03811 135 RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL-----E--------------------------- 182 (353)
T ss_pred ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh-----h---------------------------
Confidence 9999999999999999988773 38999999 5555544331110 0
Q ss_pred chhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEE
Q 011690 247 TIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~ 326 (479)
... .+++..++++|++.+.||++.+++|++.+.++ .++++|+
T Consensus 183 ----------~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~---------------------------~~~~~l~ 224 (353)
T cd03811 183 ----------LGI-PPDGPVILAVGRLSPQKGFDTLIRAFALLRKE---------------------------GPDARLV 224 (353)
T ss_pred ----------cCC-CCCceEEEEEecchhhcChHHHHHHHHHhhhc---------------------------CCCceEE
Confidence 011 23346899999999999999999999999864 7889999
Q ss_pred EEecCCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 327 ITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 327 IvG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
|+|.|+..+.+++.++++++ ++|.|.|. .+++.++++.||++++| +..+++|++++|||++|+|||+++.++.
T Consensus 225 i~G~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~i~p---s~~e~~~~~~~Ea~~~G~PvI~~~~~~~ 298 (353)
T cd03811 225 ILGDGPLREELEALAKELGLADRVHFLGF---QSNPYPYLKAADLFVLS---SRYEGFPNVLLEAMALGTPVVATDCPGP 298 (353)
T ss_pred EEcCCccHHHHHHHHHhcCCCccEEEecc---cCCHHHHHHhCCEEEeC---cccCCCCcHHHHHHHhCCCEEEcCCCCh
Confidence 99999999999999999988 68999997 67899999999999998 5568899999999999999999999999
Q ss_pred hhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 406 EELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 406 ~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
.|++.++.+|+++ ++++++++.+..+... .++++.++++++++.+
T Consensus 299 ~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 345 (353)
T cd03811 299 REILEDGENGLLVPVGDEAALAAAALALLDL-LLDPELRERLAAAARE 345 (353)
T ss_pred HHHhcCCCceEEECCCCHHHHHHHHHHHHhc-cCChHHHHHHHHHHHH
Confidence 9999999999999 4577885444443332 2267888888886655
No 54
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.3e-29 Score=271.90 Aligned_cols=311 Identities=14% Similarity=0.144 Sum_probs=215.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-------cCCcEEEEecCchhhh------hhhhcCCCchhHHHHHHHhHHHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-------RRSAFIVDWHNFGYTL------LSLSLGRRSHFVSIYRCFSVLRIEK 166 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-------~~~~~ii~~h~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~e~ 166 (479)
.+|||||+|+ +.+.++..+++.. .++|+|+|+|+..+.- ...... .................+
T Consensus 140 ~~pDiiH~hd---w~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~-~~~~~~~~~~~~~~n~lk 215 (489)
T PRK14098 140 WKPDIIHCHD---WYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLP-EEVCSGLHREGDEVNMLY 215 (489)
T ss_pred CCCCEEEecC---cHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCC-HHhhhhhhhcCCcccHHH
Confidence 4899999998 6666666666543 3799999999975310 000000 000000000000012245
Q ss_pred HHhhcCCEEEEeCHHHHHHHHHh----hC---------CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccc
Q 011690 167 YYGKMANGCLCVTQAMQHELAQN----WG---------IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQD 232 (479)
Q Consensus 167 ~~~~~ad~vi~vS~~~~~~l~~~----~~---------~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (479)
...+.||.|+++|+..++++... +| .++.+|+|| |.+.|.|..... +..+++.. +
T Consensus 216 ~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~---~~~~~~~~--------~ 284 (489)
T PRK14098 216 TGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKL---IKKRYSIE--------R 284 (489)
T ss_pred HHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCccccc---ccccCCcc--------h
Confidence 55678999999999999988752 23 248999999 888888753210 10010000 0
Q ss_pred cccccccCCcccccchhccccccccccC--CCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHh
Q 011690 233 CVSNAGMEGQKADETIFTSLAGIDVFLK--PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 310 (479)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~ 310 (479)
..+ +.... ...+..++++ ++.| +++++||+.++||++.+++|+..+.+
T Consensus 285 ------~~~-k~~~k---~~l~~~lgl~~~~~~~-~i~~vgRl~~~KG~d~li~a~~~l~~------------------- 334 (489)
T PRK14098 285 ------LDG-KLENK---KALLEEVGLPFDEETP-LVGVIINFDDFQGAELLAESLEKLVE------------------- 334 (489)
T ss_pred ------hhh-HHHHH---HHHHHHhCCCCccCCC-EEEEeccccccCcHHHHHHHHHHHHh-------------------
Confidence 000 00000 0011223443 3444 89999999999999999999998863
Q ss_pred hhccCcccCCCCEEEEEEecCCC--hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHH
Q 011690 311 EISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV 388 (479)
Q Consensus 311 ~~~~~~~~~~p~~~l~IvG~G~~--~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ll 388 (479)
++++|+|+|+|+. .+.+++.+++++ ++|.|.|. ++.+++..+|++||++++| |..|++|++.+
T Consensus 335 ----------~~~~lvivG~G~~~~~~~l~~l~~~~~-~~V~~~g~-~~~~~~~~~~a~aDi~l~P---S~~E~~Gl~~l 399 (489)
T PRK14098 335 ----------LDIQLVICGSGDKEYEKRFQDFAEEHP-EQVSVQTE-FTDAFFHLAIAGLDMLLMP---GKIESCGMLQM 399 (489)
T ss_pred ----------cCcEEEEEeCCCHHHHHHHHHHHHHCC-CCEEEEEe-cCHHHHHHHHHhCCEEEeC---CCCCCchHHHH
Confidence 3699999999974 477888888764 68999997 8999999999999999999 67899999999
Q ss_pred HHHhCCCcEEEecCccchhcccc----CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHH
Q 011690 389 DMFGCGLPVCAVSYSCIEELVKV----DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 462 (479)
Q Consensus 389 Eama~G~PVIas~~~~~~e~i~~----~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 462 (479)
|||+||+|+|+++.||..|.+.+ +.+|+++ .|+++|+++|.++++.+. +++.++++++++.+ ..++|+...
T Consensus 400 EAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~-~~~~~~~~~~~~~~--~~fsw~~~a 476 (489)
T PRK14098 400 FAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYH-DEERWEELVLEAME--RDFSWKNSA 476 (489)
T ss_pred HHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhc--CCCChHHHH
Confidence 99999999999999999988864 6799999 579999999998765322 57788888776644 478888887
Q ss_pred HHHHHHHHHHHH
Q 011690 463 EEHAKPLITEVI 474 (479)
Q Consensus 463 ~~~~~~~~~~~~ 474 (479)
++. ..++++++
T Consensus 477 ~~y-~~lY~~~~ 487 (489)
T PRK14098 477 EEY-AQLYRELL 487 (489)
T ss_pred HHH-HHHHHHHh
Confidence 654 56666654
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.98 E-value=2.4e-29 Score=251.90 Aligned_cols=242 Identities=22% Similarity=0.266 Sum_probs=188.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||++++..+ ........+..++|+|+++|++.+. .... .......|.++++|
T Consensus 95 ~~~dii~~~~~~~~--~~~~~~~~~~~~~~~i~~~hd~~~~---------~~~~------------~~~~~~~d~ii~~s 151 (359)
T cd03823 95 FRPDVVHFHHLQGL--GVSILRAARDRGIPIVLTLHDYWLI---------CPRQ------------GLFKKGGDAVIAPS 151 (359)
T ss_pred cCCCEEEECCccch--HHHHHHHHHhcCCCEEEEEeeeeee---------cchh------------hhhccCCCEEEEeC
Confidence 78999999985322 2222233445679999999986411 0100 11112349999999
Q ss_pred HHHHHHHHHhhC--CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWG--IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~--~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+.+++.+.+... .++.+++|+ +...+.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~---------------------------------------------- 185 (359)
T cd03823 152 RFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR---------------------------------------------- 185 (359)
T ss_pred HHHHHHHHHcCCCccceEEecCCcChhhcccccc----------------------------------------------
Confidence 999998887643 258999999 5544433220
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHH
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~ 336 (479)
..++.+..++++|++.+.||++.+++|++.+.+ ++++|+++|.|+....
T Consensus 186 --~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-----------------------------~~~~l~i~G~~~~~~~ 234 (359)
T cd03823 186 --APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-----------------------------GDIELVIVGNGLELEE 234 (359)
T ss_pred --CCCCCceEEEEEecCccccCHHHHHHHHHHHHh-----------------------------cCcEEEEEcCchhhhH
Confidence 012334589999999999999999999998752 5799999999987665
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCC-CCCCCcHHHHHHHhCCCcEEEecCccchhccccCcc
Q 011690 337 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 414 (479)
Q Consensus 337 l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~ 414 (479)
.+... +. ++|.|.|. ++.+++..+|++||++++| + ..|++|++++|||+||+|||+|+.++..|++.++.+
T Consensus 235 ~~~~~---~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~p---s~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~ 307 (359)
T cd03823 235 ESYEL---EGDPRVEFLGA-YPQEEIDDFYAEIDVLVVP---SIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVN 307 (359)
T ss_pred HHHhh---cCCCeEEEeCC-CCHHHHHHHHHhCCEEEEc---CcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCc
Confidence 54433 34 78999997 9999999999999999998 4 378899999999999999999999999999999999
Q ss_pred EEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 415 GLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 415 G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
|+++ .|++++++++.++++ +++.++.+++++++.
T Consensus 308 g~~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~~~~~ 343 (359)
T cd03823 308 GLLFPPGDAEDLAAALERLID----DPDLLERLRAGIEPP 343 (359)
T ss_pred EEEECCCCHHHHHHHHHHHHh----ChHHHHHHHHhHHHh
Confidence 9999 458999999999999 589999999999883
No 56
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=2.5e-29 Score=262.05 Aligned_cols=347 Identities=16% Similarity=0.165 Sum_probs=222.6
Q ss_pred CCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccc---c-C-CCCeEEEEeecCCCCCCCCCchhHHHHHH-------
Q 011690 14 DLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAI---L-E-HPSIHIHTMTQWPTIPRGLPKVLKPVLLL------- 81 (479)
Q Consensus 14 ~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~---~-~-~~gi~i~~~~~~~~~~~~~~~~~~~~~~l------- 81 (479)
+-|+.-|+.+.+..|++. |+|+++|..+....... . . -+.+.+...+ .. ....+.+..+
T Consensus 13 ~~G~~~r~~~~~~~L~~~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-----~~~~~~~~~l~~~~p~~ 83 (397)
T TIGR03087 13 NKGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLD--PR-----VARLRSLLGLLTGEPLS 83 (397)
T ss_pred CCCCcEeHHHHHHHHHhc--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecC--cH-----HHHHHHHhhhcCCCCCc
Confidence 345667888889999774 99999998754321110 0 0 1122222221 00 0000000000
Q ss_pred HHH--HHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHH-HhcCCcEEEEecCchhhhhh-hhcCCCchhHHHHH
Q 011690 82 LKP--LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLS-LSLGRRSHFVSIYR 157 (479)
Q Consensus 82 ~~~--l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~-~~~~~~~ii~~h~~~~~~~~-~~~~~~~~~~~~~~ 157 (479)
... -.++...++.++. ..++|+||++++... .++. ...++|+|++.|+.....+. ...........+++
T Consensus 84 ~~~~~~~~~~~~l~~~~~-~~~~D~v~~~~~~~~------~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~ 156 (397)
T TIGR03087 84 LPYYRSRRLARWVNALLA-AEPVDAIVVFSSAMA------QYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYR 156 (397)
T ss_pred chhhCCHHHHHHHHHHHh-hCCCCEEEEeccccc------eeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHH
Confidence 000 0111222233332 278999999984321 2222 34678999999986422211 11000111111111
Q ss_pred H--HhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCC---eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcc
Q 011690 158 C--FSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQ 231 (479)
Q Consensus 158 ~--~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
. ......|+.+++.+|.++++|+.+++.+.+..+. ++.+|||| |.+.|.+.... ..
T Consensus 157 ~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~--~~---------------- 218 (397)
T TIGR03087 157 REGRLLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDY--PN---------------- 218 (397)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccc--cC----------------
Confidence 0 1123458989999999999999999998776432 48899999 77777654311 00
Q ss_pred ccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHH----HHHhHHHHhhhhccCCCchhhh
Q 011690 232 DCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEA----ALMYDRRVAAILNEDDSTNEEV 307 (479)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA----~~~l~~~~~~~~~~~~~~~~~~ 307 (479)
...++++ +++++|++.+.||++.++.+ +..+.++
T Consensus 219 --------------------------~~~~~~~-~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~--------------- 256 (397)
T TIGR03087 219 --------------------------PYPPGKR-VLVFTGAMDYWPNIDAVVWFAERVFPAVRAR--------------- 256 (397)
T ss_pred --------------------------CCCCCCc-EEEEEEecCCccCHHHHHHHHHHHHHHHHHH---------------
Confidence 0112333 79999999999999998854 4444443
Q ss_pred hHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHH
Q 011690 308 FLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 386 (479)
Q Consensus 308 ~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ 386 (479)
.|+++|+|+|+|+.. . +++++. ++|.|+|. ++ ++..+|++||++|+|+. .++|+|++
T Consensus 257 ------------~p~~~l~ivG~g~~~-~----~~~l~~~~~V~~~G~-v~--~~~~~~~~adv~v~Ps~--~~eG~~~~ 314 (397)
T TIGR03087 257 ------------RPAAEFYIVGAKPSP-A----VRALAALPGVTVTGS-VA--DVRPYLAHAAVAVAPLR--IARGIQNK 314 (397)
T ss_pred ------------CCCcEEEEECCCChH-H----HHHhccCCCeEEeee-cC--CHHHHHHhCCEEEeccc--ccCCcccH
Confidence 789999999999853 2 334444 68999997 54 89999999999999932 46889999
Q ss_pred HHHHHhCCCcEEEecCccchhccccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 387 VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 387 llEama~G~PVIas~~~~~~e~i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
++||||||+|||+|+.++. .+...+++|+++ +|+++++++|.++++ |++.++.|++++++.. ..++|+..-+
T Consensus 315 ~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~~~~~~la~ai~~ll~----~~~~~~~~~~~ar~~v~~~fsw~~~~~ 388 (397)
T TIGR03087 315 VLEAMAMAKPVVASPEAAE-GIDALPGAELLVAADPADFAAAILALLA----NPAEREELGQAARRRVLQHYHWPRNLA 388 (397)
T ss_pred HHHHHHcCCCEEecCcccc-cccccCCcceEeCCCHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999997543 333445678887 789999999999998 5889999999998853 4677765544
No 57
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=3.1e-29 Score=269.15 Aligned_cols=269 Identities=14% Similarity=0.204 Sum_probs=205.2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHH--HhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKY--YGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~ad~vi~ 177 (479)
.++|++|++.|+.... .+......+|.++.+|+.-+.... ....... +...+ +.. ..+.+|.+|+
T Consensus 210 ~~~di~i~dr~~~~~~----~~~~~~~~~~~v~~lH~~h~~~~~--~~~~~~~--~~~~y-----~~~~~~~~~~D~iI~ 276 (500)
T TIGR02918 210 TKKDIIILDRSTGIGQ----AVLENKGPAKLGVVVHAEHFSESA--TNETYIL--WNNYY-----EYQFSNADYIDFFIT 276 (500)
T ss_pred CCCCEEEEcCCcccch----HHHhcCCCceEEEEEChhhhcCcc--CcchhHH--HHHHH-----HHHHhchhhCCEEEE
Confidence 6899999998653221 133445578999999975421110 0001111 11112 211 2356899999
Q ss_pred eCHHHHHHHHHhhC------CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhc
Q 011690 178 VTQAMQHELAQNWG------IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 250 (479)
Q Consensus 178 vS~~~~~~l~~~~~------~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (479)
+|+..++.+.+.++ .++.+|||| +...+.+..
T Consensus 277 ~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~----------------------------------------- 315 (500)
T TIGR02918 277 ATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ----------------------------------------- 315 (500)
T ss_pred CCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc-----------------------------------------
Confidence 99999988876543 237899998 333222210
Q ss_pred cccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec
Q 011690 251 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~ 330 (479)
..++..|+++||+.+.||++.||+|+..+.++ .|+++|.|+|+
T Consensus 316 ----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~---------------------------~p~~~l~i~G~ 358 (500)
T TIGR02918 316 ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKS---------------------------VPELTFDIYGE 358 (500)
T ss_pred ----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhh---------------------------CCCeEEEEEEC
Confidence 11234799999999999999999999999875 89999999999
Q ss_pred CCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc-cchhc
Q 011690 331 GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEEL 408 (479)
Q Consensus 331 G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~-~~~e~ 408 (479)
|+..+.+++.++++++ ++|.|.|. . ++.++|+.||++|+| |..||||++++||||||+|||+++.+ |.+|+
T Consensus 359 G~~~~~l~~~i~~~~l~~~V~f~G~-~---~~~~~~~~adv~v~p---S~~Egfgl~~lEAma~G~PVI~~dv~~G~~ei 431 (500)
T TIGR02918 359 GGEKQKLQKIINENQAQDYIHLKGH-R---NLSEVYKDYELYLSA---STSEGFGLTLMEAVGSGLGMIGFDVNYGNPTF 431 (500)
T ss_pred chhHHHHHHHHHHcCCCCeEEEcCC-C---CHHHHHHhCCEEEEc---CccccccHHHHHHHHhCCCEEEecCCCCCHHH
Confidence 9999999999999998 78999996 3 688999999999999 67899999999999999999999986 89999
Q ss_pred cccCccEEEeC-C---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 011690 409 VKVDKNGLLFS-S---------SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 472 (479)
Q Consensus 409 i~~~~~G~l~~-~---------~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 472 (479)
|+++.+|++++ + +++||++|.++++ ++.+++|++++++....++|+..|++ ...++++
T Consensus 432 I~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-----~~~~~~~~~~a~~~a~~fs~~~v~~~-w~~ll~~ 499 (500)
T TIGR02918 432 IEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-----SNDIDAFHEYSYQIAEGFLTANIIEK-WKKLVRE 499 (500)
T ss_pred ccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHhh
Confidence 99999999995 1 7889999999985 34689999999988888889888765 3355554
No 58
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=2.8e-29 Score=256.05 Aligned_cols=327 Identities=16% Similarity=0.148 Sum_probs=215.1
Q ss_pred EEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCccc-ccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011690 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (479)
Q Consensus 7 ~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~-~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (479)
++++... +...+|.++.+..|++. ..+++|+|......... ......+....+. . .+...+....+.
T Consensus 2 i~~~~~~-~~~~GG~E~~~~~l~~~-l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~--- 69 (351)
T cd03804 2 VAIVHDW-LVNIGGGEKVVEALARL-FPDADIFTLVDDPDKLPRLLRLKKIRTSFIQ--K-----LPFARRRYRKYL--- 69 (351)
T ss_pred EEEEEec-cccCCCHHHHHHHHHHh-CCCCCEEEEeecCCccchhhcCCceeechhh--h-----chhhHhhHhhhC---
Confidence 4445433 34457778889999997 66677777543221111 1111122222222 0 111111111111
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCch---hhhhh---hhcCCCc-hhHHHHHH
Q 011690 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG---YTLLS---LSLGRRS-HFVSIYRC 158 (479)
Q Consensus 86 ~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~---~~~~~---~~~~~~~-~~~~~~~~ 158 (479)
.++..++..+ +..++|+|++++++.. ..+....++|.+..+|... ++... ...+... ........
T Consensus 70 -~~~~~~~~~~-~~~~~D~v~~~~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
T cd03804 70 -PLMPLAIEQF-DLSGYDLVISSSHAVA------KGVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLH 141 (351)
T ss_pred -chhhHHHHhc-cccCCCEEEEcCcHHh------ccccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHH
Confidence 1111112211 2368999998873211 1111345778888888632 11110 0000000 00011111
Q ss_pred HhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccccc
Q 011690 159 FSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNA 237 (479)
Q Consensus 159 ~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
+ ....++...+.+|.++++|+.+++.+.+.++.+..+++|+ +.+.|.+..
T Consensus 142 ~-~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~---------------------------- 192 (351)
T cd03804 142 Y-LRIWDRRSAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE---------------------------- 192 (351)
T ss_pred H-HHHHHHHHhcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC----------------------------
Confidence 1 2334777788999999999999999988888888899998 544443321
Q ss_pred ccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcc
Q 011690 238 GMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQ 317 (479)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
... ..++++|++.+.||++.+++|++.+
T Consensus 193 -----------------------~~~-~~il~~G~~~~~K~~~~li~a~~~~---------------------------- 220 (351)
T cd03804 193 -----------------------EKE-DYYLSVGRLVPYKRIDLAIEAFNKL---------------------------- 220 (351)
T ss_pred -----------------------CCC-CEEEEEEcCccccChHHHHHHHHHC----------------------------
Confidence 012 2688999999999999999999753
Q ss_pred cCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 318 YLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 318 ~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
| ++|+|+|+|+..+.+++ ...++|.|.|. ++.+++..+|++||++++| +. |++|++++|||+||+||
T Consensus 221 ---~-~~l~ivG~g~~~~~l~~----~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~p---s~-e~~g~~~~Eama~G~Pv 287 (351)
T cd03804 221 ---G-KRLVVIGDGPELDRLRA----KAGPNVTFLGR-VSDEELRDLYARARAFLFP---AE-EDFGIVPVEAMASGTPV 287 (351)
T ss_pred ---C-CcEEEEECChhHHHHHh----hcCCCEEEecC-CCHHHHHHHHHhCCEEEEC---Cc-CCCCchHHHHHHcCCCE
Confidence 4 78999999997776665 22378999997 9999999999999999998 55 88999999999999999
Q ss_pred EEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 011690 398 CAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDS-DVLKKLRNGTLE 451 (479)
Q Consensus 398 Ias~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~-~~~~~~~~~~~~ 451 (479)
|+++.++..|++.++.+|+++ +|+++++++|.+++++ + ...+.+++++.+
T Consensus 288 i~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~----~~~~~~~~~~~~~~ 340 (351)
T cd03804 288 IAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKN----EDFDPQAIRAHAER 340 (351)
T ss_pred EEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC----cccCHHHHHHHHHh
Confidence 999999999999999999999 5699999999999995 4 455666666654
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.97 E-value=1.8e-28 Score=257.28 Aligned_cols=264 Identities=19% Similarity=0.219 Sum_probs=200.5
Q ss_pred CCcEEEEeCCCCcchHHHHHHHHHhcCC-cEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 101 SPDVFLVQNPPSVPTLVAVKWASSLRRS-AFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 101 ~~DvI~~~~p~~~~~~~~~~~~~~~~~~-~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
++|++|.+- ......++.+++...+. ++|.+.|++. +.... ... ....+ .+.+.+.+|.++++|
T Consensus 127 ~~~v~~sy~--~~~~~~~~~~l~~~~~~~~~i~~~Hg~d--~~~~~---~~~---~~~~~-----~~~~~~~~d~ii~~S 191 (407)
T cd04946 127 QGTVFYSYW--LHETAYALALLKKEYLRKRVISRAHGYD--LYEDR---YPS---GYIPL-----RRYLLSSLDAVFPCS 191 (407)
T ss_pred CceEEEEec--CchHHHHHHHHHHhcCCceEEEEeccch--hhhhh---ccc---cchHH-----HHHHHhcCCEEEECC
Confidence 445555543 23333333344444444 4888999864 11100 000 11112 444567899999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
+.+++.+.+.++.. +.++||| +...+.+..
T Consensus 192 ~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~---------------------------------------------- 225 (407)
T cd04946 192 EQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP---------------------------------------------- 225 (407)
T ss_pred HHHHHHHHHHCCCccccEEEEECCcccccccCCC----------------------------------------------
Confidence 99999999887653 7899999 433332211
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCC--CEEEEEEecCCC
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP--RLLFIITGKGPD 333 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~l~IvG~G~~ 333 (479)
..+++..++++|++.+.||++.+++|+..+.++ .| +++++++|+|+.
T Consensus 226 ----~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~~~iiG~g~~ 274 (407)
T cd04946 226 ----SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKA---------------------------RPSIKIKWTHIGGGPL 274 (407)
T ss_pred ----CCCCCEEEEEeeccccccCHHHHHHHHHHHHHh---------------------------CCCceEEEEEEeCchH
Confidence 012345899999999999999999999999875 55 577899999999
Q ss_pred hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHc--CCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccc
Q 011690 334 KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 410 (479)
Q Consensus 334 ~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~--adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~ 410 (479)
.+.+++.+++++. ++|.|+|. ++.+++..+|+. +|+++.| |..||+|++++||||||+|||+|+.||.+|++.
T Consensus 275 ~~~l~~~~~~~~~~~~V~f~G~-v~~~e~~~~~~~~~~~v~v~~---S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~ 350 (407)
T cd04946 275 EDTLKELAESKPENISVNFTGE-LSNSEVYKLYKENPVDVFVNL---SESEGLPVSIMEAMSFGIPVIATNVGGTPEIVD 350 (407)
T ss_pred HHHHHHHHHhcCCCceEEEecC-CChHHHHHHHhhcCCCEEEeC---CccccccHHHHHHHHcCCCEEeCCCCCcHHHhc
Confidence 9999999988777 68999996 999999999976 6788887 678999999999999999999999999999999
Q ss_pred cCccEEEeC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHH
Q 011690 411 VDKNGLLFS---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 464 (479)
Q Consensus 411 ~~~~G~l~~---~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 464 (479)
++.+|+++. |+++++++|.++++ +++.++.|++++++.. ..++|+...++
T Consensus 351 ~~~~G~l~~~~~~~~~la~~I~~ll~----~~~~~~~m~~~ar~~~~~~f~~~~~~~~ 404 (407)
T cd04946 351 NGGNGLLLSKDPTPNELVSSLSKFID----NEEEYQTMREKAREKWEENFNASKNYRE 404 (407)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcCHHHhHHH
Confidence 999999983 58999999999998 6899999999999854 46666665544
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=1.8e-28 Score=248.51 Aligned_cols=279 Identities=17% Similarity=0.172 Sum_probs=193.8
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhhc----------------CCCchhHHHHHHHhHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSL----------------GRRSHFVSIYRCFSVL 162 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 162 (479)
.+||+||+|.+.... +....+.+. .++|+|++.|++......... ...........+. ..
T Consensus 50 ~~~diih~~~~~~~~--~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 126 (365)
T cd03825 50 INADIVHLHWIHGGF--LSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWI-WR 126 (365)
T ss_pred ccCCEEEEEccccCc--cCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHH-HH
Confidence 799999999843322 112222333 489999999986321110000 0000000011111 11
Q ss_pred HHHHHHhhcCCEEEEeCHHHHHHHHHhhC---CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccc
Q 011690 163 RIEKYYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 238 (479)
Q Consensus 163 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~---~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
...+.+...++.++++|+.+++.+.+.+. .++.++||| +.+.|.+..... ....
T Consensus 127 ~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~---~~~~------------------- 184 (365)
T cd03825 127 RKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKRE---ARKR------------------- 184 (365)
T ss_pred HHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHH---HHHH-------------------
Confidence 11333335678899999999998877653 349999999 767776654221 1111
Q ss_pred cCCcccccchhccccccccccCCCCCeEEEEEecCCC--CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCc
Q 011690 239 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 316 (479)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~--~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
.+.+++++ +++++|+... .||++.+++|+..+.++
T Consensus 185 ------------------~~~~~~~~-~i~~~~~~~~~~~K~~~~ll~a~~~l~~~------------------------ 221 (365)
T cd03825 185 ------------------LGLPADKK-IILFGAVGGTDPRKGFDELIEALKRLAER------------------------ 221 (365)
T ss_pred ------------------hCCCCCCe-EEEEEecCCCccccCHHHHHHHHHHhhhc------------------------
Confidence 12334443 5556666544 89999999999988652
Q ss_pred ccCCCCEEEEEEecCCChHHHHHHHHHcCC-CcEEEecCCCC-cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCC
Q 011690 317 QYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLS-AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 394 (479)
Q Consensus 317 ~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~-~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G 394 (479)
..++++++++|+|+..... ++ .+|.|+|. ++ .+++..+|+.||++++| |..|++|.+++|||+||
T Consensus 222 --~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~-~~~~~~~~~~~~~ad~~l~p---s~~e~~g~~~~Eam~~g 288 (365)
T cd03825 222 --WKDDIELVVFGASDPEIPP-------DLPFPVHYLGS-LNDDESLALIYSAADVFVVP---SLQENFPNTAIEALACG 288 (365)
T ss_pred --cCCCeEEEEeCCCchhhhc-------cCCCceEecCC-cCCHHHHHHHHHhCCEEEec---cccccccHHHHHHHhcC
Confidence 2578999999998743321 34 67999997 88 78899999999999998 66789999999999999
Q ss_pred CcEEEecCccchhccccCccEEEeC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHH
Q 011690 395 LPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 463 (479)
Q Consensus 395 ~PVIas~~~~~~e~i~~~~~G~l~~--~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 463 (479)
+|||+++.++..|++.++.+|++++ +++++++++.++++ +++.++++++++++.. ..++|+...+
T Consensus 289 ~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~ 356 (365)
T cd03825 289 TPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLA----DPDEREELGEAARELAENEFDSRVQAK 356 (365)
T ss_pred CCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999999984 68999999999998 5888899999888753 3455654443
No 61
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=4.9e-28 Score=253.98 Aligned_cols=323 Identities=11% Similarity=0.039 Sum_probs=197.5
Q ss_pred cceEEEEEecCCCCChhHHHH-HHHHHhhCCCcEEEEecCCCCCcccccCCCCe-EEEEeecCCCCCCCCCchhHHHH--
Q 011690 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSI-HIHTMTQWPTIPRGLPKVLKPVL-- 79 (479)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~-a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~~~~~~~-- 79 (479)
||+++|.+....|+++++... +..+.+ .||+|.|+...+..+.... ...++ .+..+. .. .... ..+.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~--~~----~~~~-~~~~~~ 71 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYGKGGKESV-SHQNYPQVIKHT--PR----MTAM-ANIALF 71 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecCCCccccc-ccCCcceEEEec--cc----HHHH-HHHHHH
Confidence 488999988888888888665 444555 5999999987665443211 11222 122222 00 0000 0000
Q ss_pred -----HHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHH--HHHH---H-HHhcCCcEEEEecCchhhh-------
Q 011690 80 -----LLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLV--AVKW---A-SSLRRSAFIVDWHNFGYTL------- 141 (479)
Q Consensus 80 -----~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~--~~~~---~-~~~~~~~~ii~~h~~~~~~------- 141 (479)
.....+.. ...++.+..+|||||+|+-......+ +..+ + .+..++|+|.|.|+...-.
T Consensus 72 ~~~~~~~~~~~~~----~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~ 147 (405)
T PRK10125 72 RLFNRDLFGNFNE----LYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTD 147 (405)
T ss_pred HhcchhhcchHHH----HHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCc
Confidence 00011111 11122234799999999833221111 1111 1 1234689999999864111
Q ss_pred ----hhhhc--------CCCchhHHHHHHHhHH--HHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe-EEEecCC-CCCCC
Q 011690 142 ----LSLSL--------GRRSHFVSIYRCFSVL--RIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFF 205 (479)
Q Consensus 142 ----~~~~~--------~~~~~~~~~~~~~~~~--~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~~~~f 205 (479)
+.... ..... ....++.+.. ..-+.+.+.++.+|++|+.+++.+.+.++.. +.+|||| |.+.+
T Consensus 148 ~C~~~~~~c~~Cp~l~~~~~~~-~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~ 226 (405)
T PRK10125 148 GCEGWKTGCQKCPTLNNYPPVK-VDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATE 226 (405)
T ss_pred ccccccccCCCCCCccCCCCCc-cchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccc
Confidence 00000 00000 0111111000 0011222457899999999999987776644 8999999 64333
Q ss_pred CCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecC--CCCCCHHHHH
Q 011690 206 HPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILL 283 (479)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~--~~~K~~~~li 283 (479)
.+.+..... ...++++ +++++|+. .+.||++.++
T Consensus 227 ~~~~~~~~~-------------------------------------------~~~~~~~-~il~v~~~~~~~~Kg~~~li 262 (405)
T PRK10125 227 AILAELPPV-------------------------------------------RETQGKP-KIAVVAHDLRYDGKTDQQLV 262 (405)
T ss_pred ccccccccc-------------------------------------------ccCCCCC-EEEEEEeccccCCccHHHHH
Confidence 222110000 0112333 68888883 4679999999
Q ss_pred HHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHH
Q 011690 284 EAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPL 363 (479)
Q Consensus 284 eA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~ 363 (479)
+|+..+ .++++|+|+|+|+... .++|.+.|..-+.+++.+
T Consensus 263 ~A~~~l------------------------------~~~~~L~ivG~g~~~~----------~~~v~~~g~~~~~~~l~~ 302 (405)
T PRK10125 263 REMMAL------------------------------GDKIELHTFGKFSPFT----------AGNVVNHGFETDKRKLMS 302 (405)
T ss_pred HHHHhC------------------------------CCCeEEEEEcCCCccc----------ccceEEecCcCCHHHHHH
Confidence 999875 3479999999986321 146888886235678999
Q ss_pred HHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe--CCHHHHHHHH
Q 011690 364 LLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQL 428 (479)
Q Consensus 364 ~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l 428 (479)
+|++||++|+| |..|+||++++||||||+|||+|+.||++|++.++ +|+++ .|+++||+.+
T Consensus 303 ~y~~aDvfV~p---S~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~ 365 (405)
T PRK10125 303 ALNQMDALVFS---SRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLS 365 (405)
T ss_pred HHHhCCEEEEC---CccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhcc
Confidence 99999999999 67899999999999999999999999999999775 89999 5789999854
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=1.9e-27 Score=255.97 Aligned_cols=329 Identities=12% Similarity=0.073 Sum_probs=219.9
Q ss_pred CcceEEEEEecCC----CCChhHHHHHHHHHhhCCCcEEEEecC----CCCC-ccc--c--------------c-----C
Q 011690 3 RRGRACVVVLGDL----GRSPRMQYQALSLARQMSLEVDVVAYG----GSKP-HAA--I--------------L-----E 52 (479)
Q Consensus 3 ~~~~~~i~~~~~~----g~~~r~~~~a~~La~~~G~eV~Vv~~~----~~~~-~~~--~--------------~-----~ 52 (479)
..+-++||....+ |.+---...|..||+.-+++|++|.+= +... .++ . . -
T Consensus 321 ~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~ 400 (794)
T PLN02501 321 GKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGF 400 (794)
T ss_pred CCCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 3466777776544 455556677888888557899999641 1100 000 0 0 0
Q ss_pred CCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE
Q 011690 53 HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (479)
Q Consensus 53 ~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii 132 (479)
..+..|..+|.+- .. -.+...++..+.+.+.. .+|||||+++|..+...-.+..++...+ |+|.
T Consensus 401 ~~~~~i~fYpg~~--~~-~~~SI~p~gdI~~~L~~------------f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVa 464 (794)
T PLN02501 401 KADFKISFYPGKF--SK-ERRSIIPAGDTSQFIPS------------KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVG 464 (794)
T ss_pred CCCceEEeecchh--cc-CCccccchHHHHHHhhc------------cCCCEEEECCchhhccHHHHHHHHHHcC-CeEE
Confidence 1244555554110 00 11112234444555554 7999999999876554321444455556 8887
Q ss_pred EecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhh-cCCEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCCh
Q 011690 133 DWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGK-MANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSL 210 (479)
Q Consensus 133 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~ 210 (479)
.+|......+.. . ....+.++...+ +.+++.+ +||.++++|..+++ + ........|| |.++|.|...
T Consensus 465 syHTny~eYl~~-y-~~g~L~~~llk~----l~~~v~r~hcD~VIaPS~atq~-L----~~~vI~nVnGVDte~F~P~~r 533 (794)
T PLN02501 465 VVHTNYLEYIKR-E-KNGALQAFFVKH----INNWVTRAYCHKVLRLSAATQD-L----PKSVICNVHGVNPKFLKIGEK 533 (794)
T ss_pred EEeCCcHHHHhH-h-cchhHHHHHHHH----HHHHHHHhhCCEEEcCCHHHHH-h----cccceeecccccccccCCcch
Confidence 888654221111 1 112222222211 1233332 28999999988874 3 2222222268 8888988653
Q ss_pred HHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhH
Q 011690 211 EEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYD 290 (479)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~ 290 (479)
.... ..+ +..... ..++++||+.++||++.||+|++.+.
T Consensus 534 ~~~~---r~l-------------------------------------gi~~~~-kgiLfVGRLa~EKGld~LLeAla~L~ 572 (794)
T PLN02501 534 VAEE---REL-------------------------------------GQQAFS-KGAYFLGKMVWAKGYRELIDLLAKHK 572 (794)
T ss_pred hHHH---Hhc-------------------------------------CCcccc-CceEEEEcccccCCHHHHHHHHHHHH
Confidence 2111 111 121112 24789999999999999999999987
Q ss_pred HHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCE
Q 011690 291 RRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADL 370 (479)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi 370 (479)
++ .|+++|+|+|+||.++.+++.++++++ +|.|+|. .++...+|+++|+
T Consensus 573 ~~---------------------------~pnvrLvIVGDGP~reeLe~la~eLgL-~V~FLG~---~dd~~~lyasaDV 621 (794)
T PLN02501 573 NE---------------------------LDGFNLDVFGNGEDAHEVQRAAKRLDL-NLNFLKG---RDHADDSLHGYKV 621 (794)
T ss_pred hh---------------------------CCCeEEEEEcCCccHHHHHHHHHHcCC-EEEecCC---CCCHHHHHHhCCE
Confidence 65 789999999999999999999999887 4999998 7788899999999
Q ss_pred EEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHHHHHHHHHHHHhc
Q 011690 371 GVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKG 434 (479)
Q Consensus 371 ~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~ 434 (479)
||+| |..|+||++++||||||+|||+++.++. +.+.++.+|++..+++++++++.+++++
T Consensus 622 FVlP---S~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~~D~EafAeAI~~LLsd 681 (794)
T PLN02501 622 FINP---SISDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTYKTSEDFVAKVKEALAN 681 (794)
T ss_pred EEEC---CCcccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEecCCHHHHHHHHHHHHhC
Confidence 9999 6779999999999999999999999886 4477888999889999999999999995
No 63
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.97 E-value=3.2e-29 Score=248.66 Aligned_cols=347 Identities=15% Similarity=0.157 Sum_probs=239.9
Q ss_pred CCChhHHHHHHHHHhh---CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011690 16 GRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (479)
Q Consensus 16 g~~~r~~~~a~~La~~---~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 92 (479)
...++++.|+..|++. +||.|.|+|-..+....-.....|++++++|.... .+-..++. +...+.++
T Consensus 12 P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~--~n~tT~pt--------v~~~~Pll 81 (426)
T KOG1111|consen 12 PSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVG--YNQTTFPT--------VFSDFPLL 81 (426)
T ss_pred cCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeee--ecccchhh--------hhccCccc
Confidence 3456778887777666 79999999866554432333456799999983211 11111111 11112223
Q ss_pred HHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCch-hhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhc
Q 011690 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG-YTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKM 171 (479)
Q Consensus 93 ~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 171 (479)
...+.+ ++..+||-|++.+.-. --+.+.++..|.+.++|-|.+. +.-.+ + ...... -++.+.+
T Consensus 82 r~i~lr-E~I~ivhghs~fS~la-he~l~hartMGlktVfTdHSlfGfad~~------s---i~~n~l-----l~~sL~~ 145 (426)
T KOG1111|consen 82 RPILLR-ERIEIVHGHSPFSYLA-HEALMHARTMGLKTVFTDHSLFGFADIG------S---ILTNKL-----LPLSLAN 145 (426)
T ss_pred chhhhh-hceEEEecCChHHHHH-HHHHHHHHhcCceEEEeccccccccchh------h---hhhcce-----eeeeecC
Confidence 333323 6899999998543322 1133456677899999999753 11000 0 011111 3344567
Q ss_pred CCEEEEeCHHHHHHHHHh--hCC-eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccc
Q 011690 172 ANGCLCVTQAMQHELAQN--WGI-KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADET 247 (479)
Q Consensus 172 ad~vi~vS~~~~~~l~~~--~~~-~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (479)
.|.+||+|...++-..-+ ... ++.+|||. +.+.|.|.+.+ ++
T Consensus 146 id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-~~--------------------------------- 191 (426)
T KOG1111|consen 146 IDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-KP--------------------------------- 191 (426)
T ss_pred CCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-cC---------------------------------
Confidence 999999999877543222 122 28999999 88889886532 11
Q ss_pred hhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEE
Q 011690 248 IFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~I 327 (479)
.+..+.++.++|+-+.||+|.|++++..+.++ +|+++|+|
T Consensus 192 -------------S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~---------------------------~p~vrfii 231 (426)
T KOG1111|consen 192 -------------SADIITIVVASRLVYRKGIDLLLEIIPSVCDK---------------------------HPEVRFII 231 (426)
T ss_pred -------------CCCeeEEEEEeeeeeccchHHHHHHHHHHHhc---------------------------CCCeeEEE
Confidence 12225789999999999999999999999986 99999999
Q ss_pred EecCCChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch
Q 011690 328 TGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 328 vG~G~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~ 406 (479)
+|+||.+..+++..+++.+ ++|.++|. ++.+++.+.|.+-|+|+.| |..|.|+++++|||+||+|||+|..||++
T Consensus 232 ~GDGPk~i~lee~lEk~~l~~rV~~lG~-v~h~~Vr~vl~~G~IFlnt---SlTEafc~~ivEAaScGL~VVsTrVGGIp 307 (426)
T KOG1111|consen 232 IGDGPKRIDLEEMLEKLFLQDRVVMLGT-VPHDRVRDVLVRGDIFLNT---SLTEAFCMVIVEAASCGLPVVSTRVGGIP 307 (426)
T ss_pred ecCCcccchHHHHHHHhhccCceEEecc-cchHHHHHHHhcCcEEecc---HHHHHHHHHHHHHHhCCCEEEEeecCCcc
Confidence 9999999999999999988 79999999 9999999999999999998 77899999999999999999999999999
Q ss_pred hccccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 011690 407 ELVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 474 (479)
Q Consensus 407 e~i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 474 (479)
|++-++ .-++. .+++++++++++.+......+ +.+-+...+ .++|.+.-+++ +++++++.
T Consensus 308 eVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p---~~~h~~v~~---~y~w~dVa~rT-ekvy~r~~ 368 (426)
T KOG1111|consen 308 EVLPED-MITLGEPGPDDLVGAVEKAITKLRTLP---LEFHDRVKK---MYSWKDVAERT-EKVYDRAA 368 (426)
T ss_pred ccCCcc-ceeccCCChHHHHHHHHHHHHHhccCc---hhHHHHHHH---hccHHHHHHHH-HHHHHHHh
Confidence 999554 22233 458999999998888432222 222333333 56676665543 44555443
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=1.1e-27 Score=246.06 Aligned_cols=266 Identities=18% Similarity=0.291 Sum_probs=205.7
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.++|+++++.+..... .+.......+.++.+|+.......... .......++.. ....+.+|.++++|
T Consensus 98 ~~~diii~~~~~~~~~----~~~~~~~~~~~i~~~h~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~d~ii~~s 165 (372)
T cd04949 98 TKPDVFILDRPTLDGQ----ALLNMKKAAKVVVVLHSNHVSDNNDPV--HSLINNFYEYV------FENLDKVDGVIVAT 165 (372)
T ss_pred CCCCEEEECCccccch----hHHhccCCceEEEEEChHHhCCccccc--ccccchhhHHH------HhChhhCCEEEEcc
Confidence 6899999998543322 123334456678889975421111000 11111122211 12236799999999
Q ss_pred HHHHHHHHHhhCCe--EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIK--ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~--~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+..++.+.+.++.. +.+|||+ +...+.+... .
T Consensus 166 ~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~----~----------------------------------------- 200 (372)
T cd04949 166 EQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQF----K----------------------------------------- 200 (372)
T ss_pred HHHHHHHHHHhCCCCceEEEcccccChhhcccch----h-----------------------------------------
Confidence 99999998887654 7899999 5444433210 0
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHH
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~ 336 (479)
..++..++++||+.+.||++.+|+|+..+.++ .|+++|+|+|.|+....
T Consensus 201 ----~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~ 249 (372)
T cd04949 201 ----QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQ---------------------------VPDATLDIYGYGDEEEK 249 (372)
T ss_pred ----hcCCCeEEEEEccCcccCHHHHHHHHHHHHHh---------------------------CCCcEEEEEEeCchHHH
Confidence 11234789999999999999999999999876 89999999999999888
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc-cchhccccCcc
Q 011690 337 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKN 414 (479)
Q Consensus 337 l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~-~~~e~i~~~~~ 414 (479)
+++.++++++ ++|.|.|. .+++..+|+.||++|+| |..|++|++++|||+||+|||+++.+ +.++++.++.+
T Consensus 250 ~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~~---S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~ 323 (372)
T cd04949 250 LKELIEELGLEDYVFLKGY---TRDLDEVYQKAQLSLLT---SQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGEN 323 (372)
T ss_pred HHHHHHHcCCcceEEEcCC---CCCHHHHHhhhhEEEec---ccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCC
Confidence 9999988888 68999997 78999999999999999 66789999999999999999999977 78999999999
Q ss_pred EEEeC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHH
Q 011690 415 GLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 463 (479)
Q Consensus 415 G~l~~--~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 463 (479)
|++++ |+++|+++|..+++ +++.++.+++++++....++|+..|+
T Consensus 324 G~lv~~~d~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~s~~~~~~ 370 (372)
T cd04949 324 GYLVPKGDIEALAEAIIELLN----DPKLLQKFSEAAYENAERYSEENVWE 370 (372)
T ss_pred ceEeCCCcHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 99995 89999999999999 58899999999998766777776654
No 65
>PHA01630 putative group 1 glycosyl transferase
Probab=99.95 E-value=4.9e-26 Score=232.81 Aligned_cols=229 Identities=12% Similarity=0.125 Sum_probs=173.8
Q ss_pred cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHH-hhcCCEEEEeCHHHHHHHHHh-hCC--eEEEecCC-
Q 011690 126 RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYY-GKMANGCLCVTQAMQHELAQN-WGI--KATVLYDQ- 200 (479)
Q Consensus 126 ~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ad~vi~vS~~~~~~l~~~-~~~--~~~vi~n~- 200 (479)
.|.|+++++|+.. ++.+.+ +.++ .+.+|.++++|+.+++.+.+. .+. ++.+||||
T Consensus 68 ~~~~~v~e~~~~~---------------~l~~~~-----~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGV 127 (331)
T PHA01630 68 VGKNIVFEVADTD---------------AISHTA-----LYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNL 127 (331)
T ss_pred cCCceEEEEEeec---------------hhhHHH-----HHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCC
Confidence 4778999999843 122333 5556 678999999999999998765 222 48899999
Q ss_pred CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHH
Q 011690 201 PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFG 280 (479)
Q Consensus 201 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~ 280 (479)
|.+.|.+...+ .+.+.+++++|++.+.||++
T Consensus 128 d~~~f~~~~~~-------------------------------------------------~~~~~vl~~~g~~~~~Kg~d 158 (331)
T PHA01630 128 NPRMFEYKPKE-------------------------------------------------KPHPCVLAILPHSWDRKGGD 158 (331)
T ss_pred CHHHcCCCccc-------------------------------------------------cCCCEEEEEeccccccCCHH
Confidence 76666544210 12345777888999999999
Q ss_pred HHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcch
Q 011690 281 ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAED 360 (479)
Q Consensus 281 ~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~ 360 (479)
.||+|++.+.++ .++++|+|+|+|+....+ .++.. +.|. ++.++
T Consensus 159 ~Li~A~~~l~~~---------------------------~~~~~llivG~~~~~~~l------~~~~~--~~~~-v~~~~ 202 (331)
T PHA01630 159 IVVKIFHELQNE---------------------------GYDFYFLIKSSNMLDPRL------FGLNG--VKTP-LPDDD 202 (331)
T ss_pred HHHHHHHHHHhh---------------------------CCCEEEEEEeCcccchhh------ccccc--eecc-CCHHH
Confidence 999999999875 789999999977643321 12322 3565 88999
Q ss_pred HHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeC---------------------
Q 011690 361 YPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--------------------- 419 (479)
Q Consensus 361 ~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~--------------------- 419 (479)
+..+|+.||++++| |..|+||++++||||||+|||+|+.||.+|++.++.+|++++
T Consensus 203 l~~~y~~aDv~v~p---S~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~ 279 (331)
T PHA01630 203 IYSLFAGCDILFYP---VRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDP 279 (331)
T ss_pred HHHHHHhCCEEEEC---CccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCC
Confidence 99999999999999 667999999999999999999999999999999998877752
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHH
Q 011690 420 SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 463 (479)
Q Consensus 420 ~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 463 (479)
+.+++++++.+++.+.. +++.++.++++++.....++|+..-+
T Consensus 280 ~~~~~~~~ii~~l~~~~-~~~~~~~~~~~~~~~~~~fs~~~ia~ 322 (331)
T PHA01630 280 DIEDAYQKLLEALANWT-PEKKKENLEGRAILYRENYSYNAIAK 322 (331)
T ss_pred CHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56889999999988511 14556667777766566777755543
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.94 E-value=1.1e-24 Score=223.45 Aligned_cols=323 Identities=17% Similarity=0.143 Sum_probs=207.6
Q ss_pred ceEEEEEecCCCCChh-HHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011690 5 GRACVVVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (479)
Q Consensus 5 ~~~~i~~~~~~g~~~r-~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (479)
+++++++.+ .|+..+ +...+..|.++ ||+|+|++...+... ...+..|+++++++.. ...... ....+.....
T Consensus 2 ~~i~i~~~g-~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~~-~~~~~~g~~~~~~~~~--~~~~~~-~~~~l~~~~~ 75 (357)
T PRK00726 2 KKILLAGGG-TGGHVFPALALAEELKKR-GWEVLYLGTARGMEA-RLVPKAGIEFHFIPSG--GLRRKG-SLANLKAPFK 75 (357)
T ss_pred cEEEEEcCc-chHhhhHHHHHHHHHHhC-CCEEEEEECCCchhh-hccccCCCcEEEEecc--CcCCCC-hHHHHHHHHH
Confidence 345555433 343333 23556667664 999999997553212 2223368999999831 111111 1111222222
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHH
Q 011690 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLR 163 (479)
Q Consensus 84 ~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
++..+. -+++++ +..+||+||+|++ ...+.+.++++..++|+|++.|+.. .. ..
T Consensus 76 ~~~~~~-~~~~~i-k~~~pDvv~~~~~---~~~~~~~~~~~~~~~p~v~~~~~~~----------~~-------~~---- 129 (357)
T PRK00726 76 LLKGVL-QARKIL-KRFKPDVVVGFGG---YVSGPGGLAARLLGIPLVIHEQNAV----------PG-------LA---- 129 (357)
T ss_pred HHHHHH-HHHHHH-HhcCCCEEEECCC---cchhHHHHHHHHcCCCEEEEcCCCC----------cc-------HH----
Confidence 222222 122233 3378999999983 2234455667778999987655432 01 11
Q ss_pred HHHHHhhcCCEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCc
Q 011690 164 IEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQ 242 (479)
Q Consensus 164 ~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (479)
+++.++.+|.++++++.+.. +.-+.++.+++|+ +.+.+.+.. .+..
T Consensus 130 -~r~~~~~~d~ii~~~~~~~~---~~~~~~i~vi~n~v~~~~~~~~~--~~~~--------------------------- 176 (357)
T PRK00726 130 -NKLLARFAKKVATAFPGAFP---EFFKPKAVVTGNPVREEILALAA--PPAR--------------------------- 176 (357)
T ss_pred -HHHHHHHhchheECchhhhh---ccCCCCEEEECCCCChHhhcccc--hhhh---------------------------
Confidence 45556779999999885532 2223459999999 544443321 1101
Q ss_pred ccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHH-HHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCC
Q 011690 243 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILL-EAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 321 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~li-eA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 321 (479)
++.+++.+ +++++|+..+.+++..++ +|++++.+ .+
T Consensus 177 --------------~~~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~~~~----------------------------~~ 213 (357)
T PRK00726 177 --------------LAGREGKP-TLLVVGGSQGARVLNEAVPEALALLPE----------------------------AL 213 (357)
T ss_pred --------------ccCCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhh----------------------------Cc
Confidence 12233444 667788777878876666 88887753 24
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~ 401 (479)
..+.++|+|+. +.+++..+ ++++ |.|.|+ .+++.++|++||+++++ + | |++++|||+||+|||++.
T Consensus 214 -~~~~~~G~g~~-~~~~~~~~-~~~~-v~~~g~---~~~~~~~~~~~d~~i~~---~-g---~~~~~Ea~~~g~Pvv~~~ 279 (357)
T PRK00726 214 -QVIHQTGKGDL-EEVRAAYA-AGIN-AEVVPF---IDDMAAAYAAADLVICR---A-G---ASTVAELAAAGLPAILVP 279 (357)
T ss_pred -EEEEEcCCCcH-HHHHHHhh-cCCc-EEEeeh---HhhHHHHHHhCCEEEEC---C-C---HHHHHHHHHhCCCEEEec
Confidence 56789999975 45555555 7766 999998 58999999999999974 2 2 579999999999999987
Q ss_pred Ccc--------chhccccCccEEEe--CC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 402 YSC--------IEELVKVDKNGLLF--SS--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 402 ~~~--------~~e~i~~~~~G~l~--~~--~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
.++ ..+.+.+..+|+++ ++ +++|+++|.++++ +++.+++|+++++++.
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~ 339 (357)
T PRK00726 280 LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLS----DPERLEAMAEAARALG 339 (357)
T ss_pred CCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHc----CHHHHHHHHHHHHhcC
Confidence 532 24667778899998 34 8999999999999 5899999999998864
No 67
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.94 E-value=1e-24 Score=222.16 Aligned_cols=307 Identities=19% Similarity=0.160 Sum_probs=200.8
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011690 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (479)
Q Consensus 23 ~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 102 (479)
..+..|.++ ||+|+|+|....... ......|+++++++........ ....+......+..+.. +.+++ +..+|
T Consensus 18 ~la~~l~~~-G~ev~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~i-~~~~p 90 (350)
T cd03785 18 ALAEELRER-GAEVLFLGTKRGLEA-RLVPKAGIPLHTIPVGGLRRKG---SLKKLKAPFKLLKGVLQ-ARKIL-KKFKP 90 (350)
T ss_pred HHHHHHHhC-CCEEEEEECCCcchh-hcccccCCceEEEEecCcCCCC---hHHHHHHHHHHHHHHHH-HHHHH-HhcCC
Confidence 556777775 999999987654222 2233457889988821111111 11111111111221111 12222 23789
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHH
Q 011690 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAM 182 (479)
Q Consensus 103 DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 182 (479)
|+||++++.. .+.+.++++..++|+++..|+.. . ... ++++++.+|.++++|+.+
T Consensus 91 DvI~~~~~~~---~~~~~~~a~~~~~p~v~~~~~~~----------~-------~~~-----~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 91 DVVVGFGGYV---SGPVGLAAKLLGIPLVIHEQNAV----------P-------GLA-----NRLLARFADRVALSFPET 145 (350)
T ss_pred CEEEECCCCc---chHHHHHHHHhCCCEEEEcCCCC----------c-------cHH-----HHHHHHhhCEEEEcchhh
Confidence 9999998432 33445667778999887544321 0 011 445567799999999998
Q ss_pred HHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCC
Q 011690 183 QHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 261 (479)
Q Consensus 183 ~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (479)
.++ ..+.++.+++|+ +.+.|.+.+. +. .+++++
T Consensus 146 ~~~---~~~~~~~~i~n~v~~~~~~~~~~--~~-----------------------------------------~~~~~~ 179 (350)
T cd03785 146 AKY---FPKDKAVVTGNPVREEILALDRE--RA-----------------------------------------RLGLRP 179 (350)
T ss_pred hhc---CCCCcEEEECCCCchHHhhhhhh--HH-----------------------------------------hcCCCC
Confidence 876 223458899999 5555543221 11 112444
Q ss_pred CCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEE-EEEEecCCChHHHHH
Q 011690 262 NRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPDKESYEE 339 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-l~IvG~G~~~~~l~~ 339 (479)
+.+ ++++.|+....|+... +++|+..+.+ +++. ++++|+| ..+.+++
T Consensus 180 ~~~-~i~~~~g~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~i~G~g-~~~~l~~ 228 (350)
T cd03785 180 GKP-TLLVFGGSQGARAINEAVPEALAELLR-----------------------------KRLQVIHQTGKG-DLEEVKK 228 (350)
T ss_pred CCe-EEEEECCcHhHHHHHHHHHHHHHHhhc-----------------------------cCeEEEEEcCCc-cHHHHHH
Confidence 555 5555555555566654 4577777642 3455 5688998 5678888
Q ss_pred HHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc--------chhcccc
Q 011690 340 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--------IEELVKV 411 (479)
Q Consensus 340 ~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~--------~~e~i~~ 411 (479)
.++++ .++|.|.|. .+++.++|+.||++|++ + + +++++|||++|+|||+++.++ ..+.+.+
T Consensus 229 ~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~v~~---s-g---~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~ 297 (350)
T cd03785 229 AYEEL-GVNYEVFPF---IDDMAAAYAAADLVISR---A-G---ASTVAELAALGLPAILIPLPYAADDHQTANARALVK 297 (350)
T ss_pred HHhcc-CCCeEEeeh---hhhHHHHHHhcCEEEEC---C-C---HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh
Confidence 88776 478999997 48999999999999974 2 2 569999999999999987543 2466667
Q ss_pred CccEEEeC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 412 DKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 412 ~~~G~l~~----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+|++++ ++++++++|..+++ +++.++.|+.++++..
T Consensus 298 ~g~g~~v~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 298 AGAAVLIPQEELTPERLAAALLELLS----DPERLKAMAEAARSLA 339 (350)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhcC
Confidence 78999984 79999999999998 6899999999998854
No 68
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.94 E-value=6e-24 Score=220.32 Aligned_cols=356 Identities=15% Similarity=0.102 Sum_probs=209.3
Q ss_pred CCCcceEEEEEecCCC-CChhHHHHHHHHHhhCCCcEEEEecCCC--CCcccccCCCCeEEEEeecC-CCCCCC--CCch
Q 011690 1 MGRRGRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS--KPHAAILEHPSIHIHTMTQW-PTIPRG--LPKV 74 (479)
Q Consensus 1 m~~~~~~~i~~~~~~g-~~~r~~~~a~~La~~~G~eV~Vv~~~~~--~~~~~~~~~~gi~i~~~~~~-~~~~~~--~~~~ 74 (479)
|...+.+.++...+.+ ...|-|..+..|+++ ||.|.-|...+- .+. ....+..++...... ...... ....
T Consensus 1 ~~~~~~~~~~~~~~w~~~~~~~qhl~~~~a~~-~~~vl~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T cd04950 1 MADRPDILVFSADDWDFLWQRPQHLAARLAER-GNRVLYVEPPGLSRTPQ--PRGRDWVRVVLRLRAALRRPRRLDPLIP 77 (373)
T ss_pred CCCCCeEEEecccCcCCCCCCHHHHHHHHHhC-CCeEEEEeCCCccCCCC--CCCcccEEeeecccccccCccccCcccc
Confidence 3344433333333444 467889999999975 999998876542 221 112233333322100 000000 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHH
Q 011690 75 LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS 154 (479)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~ 154 (479)
........+.+...+ .+... +..-.|.|+..++|.. . .++....+.++|++.++....... ...
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~~~P~~-~----~~~~~~~~~~~Vyd~~D~~~~~~~----~~~---- 141 (373)
T cd04950 78 ARRRRLLRLLLNALL--FWAQL-ELGFGRPILWYYTPYT-L----PVAALLQASLVVYDCVDDLSAFPG----GPP---- 141 (373)
T ss_pred chhhhHHHHHHHHHH--HHHHH-hcCCCCcEEEEeCccH-H----HHHhhcCCCeEEEEcccchhccCC----CCH----
Confidence 111122222222211 11111 2233444444443322 1 233336678899988875422111 011
Q ss_pred HHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccc
Q 011690 155 IYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDC 233 (479)
Q Consensus 155 ~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (479)
..... |+.+.+.||.|+++|+.+++.+.+. +.++.+|+|| |.+.|.+....... . ..
T Consensus 142 ~~~~~-----e~~~~~~ad~vi~~S~~l~~~~~~~-~~~i~~i~ngvd~~~f~~~~~~~~~-~-~~-------------- 199 (373)
T cd04950 142 ELLEA-----ERRLLKRADLVFTTSPSLYEAKRRL-NPNVVLVPNGVDYEHFAAARDPPPP-P-AD-------------- 199 (373)
T ss_pred HHHHH-----HHHHHHhCCEEEECCHHHHHHHhhC-CCCEEEcccccCHHHhhcccccCCC-h-hH--------------
Confidence 11133 8888899999999999999887665 6669999999 76677654321100 0 00
Q ss_pred ccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhc
Q 011690 234 VSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEIS 313 (479)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
....+++ .++|+|++.+.++++.+.++++ +
T Consensus 200 ------------------------~~~~~~~-~i~y~G~l~~~~d~~ll~~la~----~--------------------- 229 (373)
T cd04950 200 ------------------------LAALPRP-VIGYYGAIAEWLDLELLEALAK----A--------------------- 229 (373)
T ss_pred ------------------------HhcCCCC-EEEEEeccccccCHHHHHHHHH----H---------------------
Confidence 0112344 8999999999888776554443 2
Q ss_pred cCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC--CCCCCcHHHHHHH
Q 011690 314 DGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMF 391 (479)
Q Consensus 314 ~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s--~~e~~p~~llEam 391 (479)
.|+++|+|+|.|+..... ......+||.|+|. ++.++++.+++.+|++++|+..+ ...++|+|++|||
T Consensus 230 ------~p~~~~vliG~~~~~~~~---~~~~~~~nV~~~G~-~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~Eyl 299 (373)
T cd04950 230 ------RPDWSFVLIGPVDVSIDP---SALLRLPNVHYLGP-KPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYL 299 (373)
T ss_pred ------CCCCEEEEECCCcCccCh---hHhccCCCEEEeCC-CCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHh
Confidence 689999999998332222 22223589999997 99999999999999999996544 3456899999999
Q ss_pred hCCCcEEEecCccchhccccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 011690 392 GCGLPVCAVSYSCIEELVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 466 (479)
Q Consensus 392 a~G~PVIas~~~~~~e~i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 466 (479)
|||+|||+|+.++ +++....+++. +|+++++++|.+++... ++...+..++ ....++|+...++..
T Consensus 300 A~G~PVVat~~~~---~~~~~~~~~~~~~d~~~~~~ai~~~l~~~--~~~~~~~~~~----~~~~~sW~~~a~~~~ 366 (373)
T cd04950 300 AAGKPVVATPLPE---VRRYEDEVVLIADDPEEFVAAIEKALLED--GPARERRRLR----LAAQNSWDARAAEML 366 (373)
T ss_pred ccCCCEEecCcHH---HHhhcCcEEEeCCCHHHHHHHHHHHHhcC--CchHHHHHHH----HHHHCCHHHHHHHHH
Confidence 9999999998654 44444455555 67999999999976641 1222222211 233677777666544
No 69
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.94 E-value=4.6e-24 Score=217.22 Aligned_cols=303 Identities=16% Similarity=0.150 Sum_probs=193.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011690 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (479)
Q Consensus 23 ~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 102 (479)
..+..|.++ ||||+|+|...... .......|+++++++ ....... .....+......+..+.. +..++ +..+|
T Consensus 19 ~La~~L~~~-g~eV~vv~~~~~~~-~~~~~~~g~~~~~i~--~~~~~~~-~~~~~l~~~~~~~~~~~~-l~~~i-~~~~p 91 (348)
T TIGR01133 19 AVAEELIKR-GVEVLWLGTKRGLE-KRLVPKAGIEFYFIP--VGGLRRK-GSFRLIKTPLKLLKAVFQ-ARRIL-KKFKP 91 (348)
T ss_pred HHHHHHHhC-CCEEEEEeCCCcch-hcccccCCCceEEEe--ccCcCCC-ChHHHHHHHHHHHHHHHH-HHHHH-HhcCC
Confidence 556777775 99999998643321 122234689999988 2221111 111112111111111111 12222 33899
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHH
Q 011690 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAM 182 (479)
Q Consensus 103 DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 182 (479)
|+||++++. ..+.+.++++..++|+|+..++.. . .+. ++++++.+|.++++|+.+
T Consensus 92 DvVi~~~~~---~~~~~~~~~~~~~~p~v~~~~~~~----------~-------~~~-----~~~~~~~~d~ii~~~~~~ 146 (348)
T TIGR01133 92 DAVIGFGGY---VSGPAGLAAKLLGIPLFHHEQNAV----------P-------GLT-----NKLLSRFAKKVLISFPGA 146 (348)
T ss_pred CEEEEcCCc---ccHHHHHHHHHcCCCEEEECCCCC----------c-------cHH-----HHHHHHHhCeeEECchhH
Confidence 999999732 233444566777889875333221 0 111 455567899999999988
Q ss_pred HHHHHHhhCCeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCC
Q 011690 183 QHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 261 (479)
Q Consensus 183 ~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (479)
++++ +..+++|+ +...+.+.. .+.. +++++
T Consensus 147 ~~~~------~~~~i~n~v~~~~~~~~~--~~~~-----------------------------------------~~~~~ 177 (348)
T TIGR01133 147 KDHF------EAVLVGNPVRQEIRSLPV--PRER-----------------------------------------FGLRE 177 (348)
T ss_pred hhcC------CceEEcCCcCHHHhcccc--hhhh-----------------------------------------cCCCC
Confidence 7654 34788998 433333221 1111 12334
Q ss_pred CCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEE-EEEecCCChHHHHH
Q 011690 262 NRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEE 339 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l-~IvG~G~~~~~l~~ 339 (479)
+.+ +++++|+....|++.. +++|++.+.++ ++++ +++|+|+ .+.+++
T Consensus 178 ~~~-~i~~~gg~~~~~~~~~~l~~a~~~l~~~-----------------------------~~~~~~~~g~~~-~~~l~~ 226 (348)
T TIGR01133 178 GKP-TILVLGGSQGAKILNELVPKALAKLAEK-----------------------------GIQIVHQTGKND-LEKVKN 226 (348)
T ss_pred CCe-EEEEECCchhHHHHHHHHHHHHHHHhhc-----------------------------CcEEEEECCcch-HHHHHH
Confidence 444 6778887777788655 55788777532 3444 4556554 478888
Q ss_pred HHHHcCCCc-EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc-------chhcccc
Q 011690 340 KIRRLRLKR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-------IEELVKV 411 (479)
Q Consensus 340 ~~~~~~l~~-V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~-------~~e~i~~ 411 (479)
.++++++.+ +.|. . . ++.++|++||++|.+ + | |++++|||++|+|+|+++.++ ..+++.+
T Consensus 227 ~~~~~~l~~~v~~~-~---~-~~~~~l~~ad~~v~~---~-g---~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~ 294 (348)
T TIGR01133 227 VYQELGIEAIVTFI-D---E-NMAAAYAAADLVISR---A-G---ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED 294 (348)
T ss_pred HHhhCCceEEecCc-c---c-CHHHHHHhCCEEEEC---C-C---hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH
Confidence 888887744 3443 2 3 899999999999974 2 2 679999999999999997643 2367888
Q ss_pred CccEEEe--C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 412 DKNGLLF--S--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 412 ~~~G~l~--~--~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+|+++ + ++++|+++|.++++ |++.+++|+++++++.
T Consensus 295 ~~~G~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 295 LGAGLVIRQKELLPEKLLEALLKLLL----DPANLEAMAEAARKLA 336 (348)
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHc----CHHHHHHHHHHHHhcC
Confidence 9999998 3 39999999999998 6899999999998754
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.94 E-value=1.1e-23 Score=221.77 Aligned_cols=262 Identities=16% Similarity=0.190 Sum_probs=181.2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+++++.....+. ....++..++|+++..|..... ....++.+.++ .+.+++.+|.++++|
T Consensus 123 ~~Pd~v~~~~~~~~~~---~l~~~~~~~ip~vl~~~~~~~~--------s~~~~~~~~~~-----~r~~~~~~d~ii~~S 186 (425)
T PRK05749 123 WRPKLVIIMETELWPN---LIAELKRRGIPLVLANARLSER--------SFKRYQKFKRF-----YRLLFKNIDLVLAQS 186 (425)
T ss_pred hCCCEEEEEecchhHH---HHHHHHHCCCCEEEEeccCChh--------hHHHHHHHHHH-----HHHHHHhCCEEEECC
Confidence 7999999886432222 2223456789988865433210 00111122333 666778899999999
Q ss_pred HHHHHHHHHhhCCe--EEEecCCCCCCCCCCC-hHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIK--ATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~--~~vi~n~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+.+++.+.+. |.+ +.+++|.+.+.+.+.. ......+..+
T Consensus 187 ~~~~~~l~~~-g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~------------------------------------- 228 (425)
T PRK05749 187 EEDAERFLAL-GAKNEVTVTGNLKFDIEVPPELAARAATLRRQ------------------------------------- 228 (425)
T ss_pred HHHHHHHHHc-CCCCCcEecccccccCCCChhhHHHHHHHHHH-------------------------------------
Confidence 9999998775 643 6778886433332221 1111222111
Q ss_pred cccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh-H
Q 011690 257 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-E 335 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~-~ 335 (479)
++ ++++ +++++|+. .|+.+.+++|++.+.++ +|+++|+|+|+|+.+ +
T Consensus 229 ~~--~~~~-vil~~~~~--~~~~~~ll~A~~~l~~~---------------------------~~~~~liivG~g~~r~~ 276 (425)
T PRK05749 229 LA--PNRP-VWIAASTH--EGEEELVLDAHRALLKQ---------------------------FPNLLLILVPRHPERFK 276 (425)
T ss_pred hc--CCCc-EEEEeCCC--chHHHHHHHHHHHHHHh---------------------------CCCcEEEEcCCChhhHH
Confidence 11 3444 56677754 57899999999998765 899999999999986 7
Q ss_pred HHHHHHHHcCCCcEEEecCCCC-----------cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC-c
Q 011690 336 SYEEKIRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-S 403 (479)
Q Consensus 336 ~l~~~~~~~~l~~V~f~G~~~~-----------~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~-~ 403 (479)
.+++.++++|++.+.|.|...+ .+++..+|+.||+++++ .|..+++|.+++|||+||+|||+++. +
T Consensus 277 ~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~--~S~~e~~g~~~lEAma~G~PVI~g~~~~ 354 (425)
T PRK05749 277 EVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG--GSLVKRGGHNPLEPAAFGVPVISGPHTF 354 (425)
T ss_pred HHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC--CCcCCCCCCCHHHHHHhCCCEEECCCcc
Confidence 8999999999876666653121 45899999999997764 24456688899999999999999863 5
Q ss_pred cchhccccC-ccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 404 CIEELVKVD-KNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 404 ~~~e~i~~~-~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+|+++.. .+|+++ +|+++|+++|.++++ |++.+++|++++++..
T Consensus 355 ~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~----~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 355 NFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLT----DPDARQAYGEAGVAFL 403 (425)
T ss_pred CHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHH
Confidence 566655432 345544 889999999999998 6999999999998854
No 71
>PHA01633 putative glycosyl transferase group 1
Probab=99.92 E-value=3.7e-23 Score=210.96 Aligned_cols=252 Identities=13% Similarity=0.161 Sum_probs=173.6
Q ss_pred EeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHH
Q 011690 107 VQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHEL 186 (479)
Q Consensus 107 ~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l 186 (479)
-..||++...++.. -....+.+++.++|+.. . ...+ .+.+.+ .+.+|++|+.+++.+
T Consensus 51 ~~~~~~~~~~~~~~-~~~~~~~~~~tt~~g~~-~---------------~~~y-----~~~m~~-~~~vIavS~~t~~~L 107 (335)
T PHA01633 51 PFHPPSLNPYLYAY-YQFKGKKYFYTTCDGIP-N---------------IEIV-----NKYLLQ-DVKFIPNSKFSAENL 107 (335)
T ss_pred ecCCcccchHHhhh-hhhcCCCceEEeeCCcC-c---------------hHHH-----HHHHhc-CCEEEeCCHHHHHHH
Confidence 34566554433332 12223567888899875 1 0233 444545 568899999999999
Q ss_pred HHhhCCe-EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCC
Q 011690 187 AQNWGIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRP 264 (479)
Q Consensus 187 ~~~~~~~-~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (479)
.+. |++ ..+|++| +.+.|.|... ...++.++++ ......
T Consensus 108 ~~~-G~~~~i~I~~GVD~~~f~p~~~-~~~~~r~~~~-------------------------------------~~~~~~ 148 (335)
T PHA01633 108 QEV-GLQVDLPVFHGINFKIVENAEK-LVPQLKQKLD-------------------------------------KDFPDT 148 (335)
T ss_pred HHh-CCCCceeeeCCCChhhcCccch-hhHHHHHHhC-------------------------------------cCCCCC
Confidence 875 664 3457788 7777876531 1122222221 111123
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCC----CEEEEEEecCCChHHHHHH
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKGPDKESYEEK 340 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~l~IvG~G~~~~~l~~~ 340 (479)
.+++++||+.++||++.|++|++.+.++ .| +++++++|++ .
T Consensus 149 ~~i~~vGRl~~~KG~~~LI~A~~~L~~~---------------------------~p~~~~~i~l~ivG~~--------~ 193 (335)
T PHA01633 149 IKFGIVSGLTKRKNMDLMLQVFNELNTK---------------------------YPDIAKKIHFFVISHK--------Q 193 (335)
T ss_pred eEEEEEeCCccccCHHHHHHHHHHHHHh---------------------------CCCccccEEEEEEcHH--------H
Confidence 4889999999999999999999999875 55 4688888742 3
Q ss_pred HHHcCC-CcEEEecC--CCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcccc------
Q 011690 341 IRRLRL-KRVAFRTM--WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV------ 411 (479)
Q Consensus 341 ~~~~~l-~~V~f~G~--~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~------ 411 (479)
.+++++ ++|.|.|. +++.+++.++|++||++|+| |..|+||++++|||+||+|||+++.++++|++..
T Consensus 194 ~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~P---S~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li 270 (335)
T PHA01633 194 FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVP---SGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLI 270 (335)
T ss_pred HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEEC---CccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceee
Confidence 455677 68999952 26789999999999999999 6679999999999999999999999998886541
Q ss_pred ------------CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHH
Q 011690 412 ------------DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 463 (479)
Q Consensus 412 ------------~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 463 (479)
+.+|+++ .+++++|++|.+++... +++.+ +.++++....++|+.-.+
T Consensus 271 ~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~--~~~~~---~~~~~~~a~~f~~~~~~~ 331 (335)
T PHA01633 271 KSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQ--DREER---SMKLKELAKKYDIRNLYT 331 (335)
T ss_pred CCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhcc--Chhhh---hHHHHHHHHhcCHHHHHH
Confidence 2347777 47999999999997751 23332 334444444676654433
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=2e-21 Score=201.40 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=170.1
Q ss_pred cCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
..+||+||++.|. ..+..+ ..+...++|++...+++. .. .+++.+.+|.++++
T Consensus 102 ~~~pD~Vi~~~~~--~~~~~~-~~~~~~~ip~~~~~td~~----------~~--------------~~~~~~~ad~i~~~ 154 (380)
T PRK13609 102 AEKPDIVINTFPI--IAVPEL-KKQTGISIPTYNVLTDFC----------LH--------------KIWVHREVDRYFVA 154 (380)
T ss_pred HhCcCEEEEcChH--HHHHHH-HHhcCCCCCeEEEeCCCC----------CC--------------cccccCCCCEEEEC
Confidence 3799999998742 122211 122334688765444433 00 11234689999999
Q ss_pred CHHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 179 TQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
|+.+++.+.+. |++ +.++.+...+.|.+... +..++.
T Consensus 155 s~~~~~~l~~~-gi~~~ki~v~G~p~~~~f~~~~~--~~~~~~------------------------------------- 194 (380)
T PRK13609 155 TDHVKKVLVDI-GVPPEQVVETGIPIRSSFELKIN--PDIIYN------------------------------------- 194 (380)
T ss_pred CHHHHHHHHHc-CCChhHEEEECcccChHHcCcCC--HHHHHH-------------------------------------
Confidence 99999998775 764 66665542233432211 112222
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEe-cC-CC
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KG-PD 333 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG-~G-~~ 333 (479)
.+++.++++.++++.|++...|++..+++++.. .++++++++| .+ +.
T Consensus 195 ~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~-------------------------------~~~~~~viv~G~~~~~ 243 (380)
T PRK13609 195 KYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS-------------------------------VPDLQVVVVCGKNEAL 243 (380)
T ss_pred HcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh-------------------------------CCCcEEEEEeCCCHHH
Confidence 234556677788888999989999998887642 4678988764 33 35
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccc----hhc
Q 011690 334 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCI----EEL 408 (479)
Q Consensus 334 ~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~----~e~ 408 (479)
.+.+++.+++++ ++|.|+|+ .+++.++|++||+++.. + .|++++|||+||+|||+++ .++. .+.
T Consensus 244 ~~~l~~~~~~~~-~~v~~~g~---~~~~~~l~~~aD~~v~~---~----gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~ 312 (380)
T PRK13609 244 KQSLEDLQETNP-DALKVFGY---VENIDELFRVTSCMITK---P----GGITLSEAAALGVPVILYKPVPGQEKENAMY 312 (380)
T ss_pred HHHHHHHHhcCC-CcEEEEec---hhhHHHHHHhccEEEeC---C----CchHHHHHHHhCCCEEECCCCCCcchHHHHH
Confidence 677777776655 68999998 56899999999998841 1 2669999999999999986 4542 234
Q ss_pred cccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHH
Q 011690 409 VKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 462 (479)
Q Consensus 409 i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 462 (479)
+.....|+...++++++++|.++++ +++.+++|++++++.....+++...
T Consensus 313 ~~~~G~~~~~~~~~~l~~~i~~ll~----~~~~~~~m~~~~~~~~~~~s~~~i~ 362 (380)
T PRK13609 313 FERKGAAVVIRDDEEVFAKTEALLQ----DDMKLLQMKEAMKSLYLPEPADHIV 362 (380)
T ss_pred HHhCCcEEEECCHHHHHHHHHHHHC----CHHHHHHHHHHHHHhCCCchHHHHH
Confidence 5444556666899999999999999 5889999999988855444444333
No 73
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.89 E-value=1.6e-21 Score=199.53 Aligned_cols=241 Identities=12% Similarity=0.118 Sum_probs=168.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh--cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~--~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
.+-|+||+|+|+.....+...++++. .++|+|+++|+..... ...... .+.+ |+.+++.||.+|+
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~----~~~~~~----~~~~-----~~~~~~~aD~iI~ 129 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLR----FDSNYY----LMKE-----EIDMLNLADVLIV 129 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHh----ccccch----hhHH-----HHHHHHhCCEEEE
Confidence 34499999998755422222232222 2799999999975211 110111 1233 7788899999999
Q ss_pred eCHHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 178 VTQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
+|+.+++++.+. |.+ +.++++.+.... .. .+ .
T Consensus 130 ~S~~~~~~l~~~-g~~~~~i~~~~~~~~~~~--~~--~~-~--------------------------------------- 164 (333)
T PRK09814 130 HSKKMKDRLVEE-GLTTDKIIVQGIFDYLND--IE--LV-K--------------------------------------- 164 (333)
T ss_pred CCHHHHHHHHHc-CCCcCceEeccccccccc--cc--cc-c---------------------------------------
Confidence 999999999776 653 555555431100 00 00 0
Q ss_pred cccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 255 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
...+ ...++|+|++...+. +.+. .++++|+|+|+|+..
T Consensus 165 ----~~~~-~~~i~yaG~l~k~~~----------l~~~---------------------------~~~~~l~i~G~g~~~ 202 (333)
T PRK09814 165 ----TPSF-QKKINFAGNLEKSPF----------LKNW---------------------------SQGIKLTVFGPNPED 202 (333)
T ss_pred ----cccC-CceEEEecChhhchH----------HHhc---------------------------CCCCeEEEECCCccc
Confidence 0012 237999999983221 1111 467999999999864
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccC----C----CCCCCcHHHHHHHhCCCcEEEecCccch
Q 011690 335 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS----S----SGLDLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~----s----~~e~~p~~llEama~G~PVIas~~~~~~ 406 (479)
+ ...++|.|.|. ++.++++.+|+. |+++++... + ....+|.|+.|+||||+|||+++.++..
T Consensus 203 ~--------~~~~~V~f~G~-~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~ 272 (333)
T PRK09814 203 L--------ENSANISYKGW-FDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA 272 (333)
T ss_pred c--------ccCCCeEEecC-CCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH
Confidence 4 12378999996 999999999998 887775322 0 1356899999999999999999999999
Q ss_pred hccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhh
Q 011690 407 ELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 456 (479)
Q Consensus 407 e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
++|+++.+|+++++.++++++|..+ . ++++++|++++++.....
T Consensus 273 ~~V~~~~~G~~v~~~~el~~~l~~~-~-----~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 273 DFIVENGLGFVVDSLEELPEIIDNI-T-----EEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHHhCCceEEeCCHHHHHHHHHhc-C-----HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 2 477899999999865333
No 74
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.89 E-value=4.7e-21 Score=204.61 Aligned_cols=325 Identities=17% Similarity=0.132 Sum_probs=200.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHH-HhcCCcEEEEecCchhhhhhhhcCCCchhH---------------HHHHHHhHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFV---------------SIYRCFSVLR 163 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~-~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 163 (479)
.++|++|+|. +.+..++..++ ...++|+|+|.|...+-.. +..+. ..+. .+... -.
T Consensus 147 ~~~dViH~He---Wm~g~a~~~lK~~~~~VptVfTtHAT~~GR~-l~~g~-~~~y~~l~~~~~d~eA~~~~I~~r---~~ 218 (590)
T cd03793 147 EPAVVAHFHE---WQAGVGLPLLRKRKVDVSTIFTTHATLLGRY-LCAGN-VDFYNNLDYFDVDKEAGKRGIYHR---YC 218 (590)
T ss_pred CCCeEEEEcc---hhHhHHHHHHHHhCCCCCEEEEecccccccc-cccCC-cccchhhhhcchhhhhhcccchHH---HH
Confidence 5799999999 66666666666 4568899999996431100 00010 0111 01111 12
Q ss_pred HHHHHhhcCCEEEEeCHHHHHHHHHhhCCe-EEEecCC-CCCCCCCCChH-HHH-HHHHhhhhcccCCCCcccccccccc
Q 011690 164 IEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLE-EKH-ELFCRLNKILHQPLGVQDCVSNAGM 239 (479)
Q Consensus 164 ~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~~~~f~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (479)
+|+.....||.+++||+.++.+....++.+ -.|+||| +.+.|.+.... ..+ ....++.
T Consensus 219 iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~f~~~~e~~~~~~~~k~ki~------------------ 280 (590)
T cd03793 219 IERAAAHCAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKKFSALHEFQNLHAQSKEKIN------------------ 280 (590)
T ss_pred HHHHHHhhCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhhcccchhhhhhhHHhhhhhh------------------
Confidence 499999999999999999999999999887 4599999 77777665311 111 1111111
Q ss_pred CCcccccchh-ccccccccccCCCCCeEEEEEecCCC-CCCHHHHHHHHHHhHHHHhhhhccC----------CCch---
Q 011690 240 EGQKADETIF-TSLAGIDVFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNED----------DSTN--- 304 (479)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~-~K~~~~lieA~~~l~~~~~~~~~~~----------~~~~--- 304 (479)
.| .+..++.+++.+++++++..+||+.. +||++.+|+|+..+..++.+. ++| .-||
T Consensus 281 --------~f~~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~-~~~~tVvafii~p~~~~~~~ 351 (590)
T cd03793 281 --------EFVRGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVE-GSDTTVVAFFIMPAKTNNFN 351 (590)
T ss_pred --------HHHHHHHhhhcCCCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEEecCccCCcC
Confidence 11 11123445666677744444899998 999999999999998863331 110 0011
Q ss_pred h-----hhhHhhhccCcc-------------------------------------------cCCCCEEEEEEecCCChHH
Q 011690 305 E-----EVFLKEISDGKQ-------------------------------------------YLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 305 ~-----~~~~~~~~~~~~-------------------------------------------~~~p~~~l~IvG~G~~~~~ 336 (479)
. +.+.+++++.-. ...|.+.=.-+ .....+.
T Consensus 352 ~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~-~~~~~D~ 430 (590)
T cd03793 352 VESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNM-VDDANDP 430 (590)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecC-CcCccCH
Confidence 1 111111111100 01111111111 1123445
Q ss_pred HHHHHHHcCC-C------cEEEecCCCCcc------hHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc
Q 011690 337 YEEKIRRLRL-K------RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 403 (479)
Q Consensus 337 l~~~~~~~~l-~------~V~f~G~~~~~~------~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~ 403 (479)
+-..+++.++ + +|+|...|++.. ++.++++.||++|+| |..|+||++++||||||+|||+|+.+
T Consensus 431 il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~P---S~yE~fG~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 431 ILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFP---SYYEPWGYTPAECTVMGIPSITTNLS 507 (590)
T ss_pred HHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEec---cccCCCCcHHHHHHHcCCCEEEccCc
Confidence 6667777766 2 377877666543 689999999999999 77799999999999999999999999
Q ss_pred cc----hhccccC-ccEEEeC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 011690 404 CI----EELVKVD-KNGLLFS---------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 466 (479)
Q Consensus 404 ~~----~e~i~~~-~~G~l~~---------~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 466 (479)
|+ +|++.++ ..|+.+. ++++|+++|.++++. +...+...+..+.+....++|+.....+.
T Consensus 508 gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~---~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~ 581 (590)
T cd03793 508 GFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL---SRRQRIIQRNRTERLSDLLDWRNLGRYYR 581 (590)
T ss_pred chhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88 5666554 3566662 267888888888863 22333333334345445677766554433
No 75
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.89 E-value=2.9e-22 Score=183.83 Aligned_cols=156 Identities=24% Similarity=0.419 Sum_probs=140.3
Q ss_pred CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHH
Q 011690 262 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 341 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~ 341 (479)
+++.+|+++|++.+.||++.+++|+..+.++ ..+++.|+|+|+++....++..+
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~--------------------------~~~~~~l~i~G~~~~~~~~~~~~ 66 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEK--------------------------KNPNYKLVIVGDGEYKKELKNLI 66 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHH--------------------------HHTTEEEEEESHCCHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhh--------------------------cCCCeEEEEEccccccccccccc
Confidence 4456999999999999999999999999763 26789999999999999999999
Q ss_pred HHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe--
Q 011690 342 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-- 418 (479)
Q Consensus 342 ~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~-- 418 (479)
+.+++ ++|.|.|. ++.+++..+|+.||++++| |..+++|.+++|||+||+|||+++.++..|++.++.+|+++
T Consensus 67 ~~~~~~~~i~~~~~-~~~~~l~~~~~~~di~v~~---s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~ 142 (172)
T PF00534_consen 67 EKLNLKENIIFLGY-VPDDELDELYKSSDIFVSP---SRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDP 142 (172)
T ss_dssp HHTTCGTTEEEEES-HSHHHHHHHHHHTSEEEE----BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEEST
T ss_pred cccccccccccccc-ccccccccccccceecccc---ccccccccccccccccccceeeccccCCceeeccccceEEeCC
Confidence 99998 79999997 8888999999999999999 55589999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 419 SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 419 ~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
.++++++++|.++++ +++.++.|++++++
T Consensus 143 ~~~~~l~~~i~~~l~----~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 NDIEELADAIEKLLN----DPELRQKLGKNARE 171 (172)
T ss_dssp TSHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC----CHHHHHHHHHHhcC
Confidence 457999999999999 48999999999886
No 76
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=4.4e-21 Score=204.58 Aligned_cols=270 Identities=13% Similarity=0.082 Sum_probs=178.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhH-HHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV-LRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ad~vi~ 177 (479)
...|+|++|. +..+.+..+++.. .+.|+++.+|....+. . +++.... ..+-+.+ -.+|.+.+
T Consensus 130 ~~~d~iwihD---yhl~llp~~lr~~~~~~~i~~f~HipfP~~---------e---~~~~lp~~~~ll~~~-l~~D~igF 193 (460)
T cd03788 130 RPGDLVWVHD---YHLLLLPQMLRERGPDARIGFFLHIPFPSS---------E---IFRCLPWREELLRGL-LGADLIGF 193 (460)
T ss_pred CCCCEEEEeC---hhhhHHHHHHHhhCCCCeEEEEEeCCCCCh---------H---HHhhCCChHHHHHHH-hcCCEEEE
Confidence 4679999999 4445555555544 3577888888532110 0 1111000 0001122 23888888
Q ss_pred eCHHHHHHHHHh-----------------hCC--eEEEecCC-CCCCCCCCCh--HHHHHHHHhhhhcccCCCCcccccc
Q 011690 178 VTQAMQHELAQN-----------------WGI--KATVLYDQ-PPEFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVS 235 (479)
Q Consensus 178 vS~~~~~~l~~~-----------------~~~--~~~vi~n~-~~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
.+......+.+. .|. ++.++||| |.+.|.+... ..+..+... .
T Consensus 194 ~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~-~-------------- 258 (460)
T cd03788 194 QTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAEL-R-------------- 258 (460)
T ss_pred CCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHH-H--------------
Confidence 886544333332 122 37899999 7777765421 111111110 0
Q ss_pred ccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccC
Q 011690 236 NAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDG 315 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (479)
+..+++ .+|+++||+.+.||++.+++|+..+.++
T Consensus 259 ----------------------~~~~~~-~~il~vgRl~~~Kgi~~ll~A~~~ll~~----------------------- 292 (460)
T cd03788 259 ----------------------ERLGGR-KLIVGVDRLDYSKGIPERLLAFERLLER----------------------- 292 (460)
T ss_pred ----------------------HhcCCC-EEEEEecCccccCCHHHHHHHHHHHHHh-----------------------
Confidence 122344 4899999999999999999999998775
Q ss_pred cccCCCC----EEEEEEec-----CCChHHHHHHHHH----cC-------CCcEEEecCCCCcchHHHHHHcCCEEEEcc
Q 011690 316 KQYLYPR----LLFIITGK-----GPDKESYEEKIRR----LR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLH 375 (479)
Q Consensus 316 ~~~~~p~----~~l~IvG~-----G~~~~~l~~~~~~----~~-------l~~V~f~G~~~~~~~~~~~l~~adi~v~p~ 375 (479)
+|+ ++|+++|. |+..+.+++.+++ ++ ...|.+.+..++.+++..+|+.||++|+|
T Consensus 293 ----~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~p- 367 (460)
T cd03788 293 ----YPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVT- 367 (460)
T ss_pred ----ChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeC-
Confidence 665 67888864 3444445544443 22 23465553338999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHhCCCc----EEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011690 376 TSSSGLDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGT 449 (479)
Q Consensus 376 ~~s~~e~~p~~llEama~G~P----VIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~ 449 (479)
|..||||++++||||||+| ||+|+.+|..+. +.+|+++ .|++++|++|.+++++ ++++++.+++++
T Consensus 368 --S~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~~e~~~~~~~~ 439 (460)
T cd03788 368 --PLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PLEERRERHRKL 439 (460)
T ss_pred --ccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 6679999999999999999 999988887766 4679998 4799999999999996 467777777777
Q ss_pred HHhhhhhchH
Q 011690 450 LEMGLSARWA 459 (479)
Q Consensus 450 ~~~~~~~~w~ 459 (479)
++....++|+
T Consensus 440 ~~~v~~~~~~ 449 (460)
T cd03788 440 REYVRTHDVQ 449 (460)
T ss_pred HHHHHhCCHH
Confidence 7654444443
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.87 E-value=4e-20 Score=192.41 Aligned_cols=264 Identities=18% Similarity=0.199 Sum_probs=173.5
Q ss_pred cCCCcEEEEeCCCCc--chHHHHHHHH-HhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEE
Q 011690 99 IASPDVFLVQNPPSV--PTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGC 175 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~--~~~~~~~~~~-~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 175 (479)
..+||+||++.|... +...+..+.+ ...++|++....++. . .+ ..++.+.+|.+
T Consensus 98 ~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~-~--------~~--------------~~w~~~~~d~~ 154 (382)
T PLN02605 98 KYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLG-T--------CH--------------PTWFHKGVTRC 154 (382)
T ss_pred hcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCC-C--------cC--------------cccccCCCCEE
Confidence 379999999754321 1111111111 124788877666652 0 00 12334789999
Q ss_pred EEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 176 LCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 176 i~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
++.|+.+++.+.+. |++ +.+++++ +.+++.+.. .+..+..
T Consensus 155 ~~~s~~~~~~l~~~-g~~~~ki~v~g~~v~~~f~~~~~--~~~~~r~--------------------------------- 198 (382)
T PLN02605 155 FCPSEEVAKRALKR-GLEPSQIRVYGLPIRPSFARAVR--PKDELRR--------------------------------- 198 (382)
T ss_pred EECCHHHHHHHHHc-CCCHHHEEEECcccCHhhccCCC--CHHHHHH---------------------------------
Confidence 99999999988776 765 7777777 333333322 2223222
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEE-EEEEec
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGK 330 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-l~IvG~ 330 (479)
.++++++++ +|+++|+..+.|++..+++++..+... .....++.+ ++++|+
T Consensus 199 ----~~gl~~~~~-~il~~Gg~~g~~~~~~li~~l~~~~~~-----------------------~~~~~~~~~~~vi~G~ 250 (382)
T PLN02605 199 ----ELGMDEDLP-AVLLMGGGEGMGPLEETARALGDSLYD-----------------------KNLGKPIGQVVVICGR 250 (382)
T ss_pred ----HcCCCCCCc-EEEEECCCcccccHHHHHHHHHHhhcc-----------------------ccccCCCceEEEEECC
Confidence 235666666 778888888889999999998754210 000134554 678887
Q ss_pred CC-ChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC------
Q 011690 331 GP-DKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY------ 402 (479)
Q Consensus 331 G~-~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~------ 402 (479)
|+ ..+.+++ ... .+|.|+|+ .++++++|++||++|.+ + | |.+++|||+||+|||+++.
T Consensus 251 ~~~~~~~L~~----~~~~~~v~~~G~---~~~~~~l~~aaDv~V~~---~-g---~~ti~EAma~g~PvI~~~~~pgqe~ 316 (382)
T PLN02605 251 NKKLQSKLES----RDWKIPVKVRGF---VTNMEEWMGACDCIITK---A-G---PGTIAEALIRGLPIILNGYIPGQEE 316 (382)
T ss_pred CHHHHHHHHh----hcccCCeEEEec---cccHHHHHHhCCEEEEC---C-C---cchHHHHHHcCCCEEEecCCCccch
Confidence 74 2333333 222 46999998 56899999999999974 2 2 5699999999999999983
Q ss_pred ccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 011690 403 SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 471 (479)
Q Consensus 403 ~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 471 (479)
++. +.+.++..|+...+++++++++.+++++ +++.+++|++++++... ...+++.+..+++
T Consensus 317 gn~-~~i~~~g~g~~~~~~~~la~~i~~ll~~---~~~~~~~m~~~~~~~~~----~~a~~~i~~~l~~ 377 (382)
T PLN02605 317 GNV-PYVVDNGFGAFSESPKEIARIVAEWFGD---KSDELEAMSENALKLAR----PEAVFDIVHDLHE 377 (382)
T ss_pred hhH-HHHHhCCceeecCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcC----CchHHHHHHHHHH
Confidence 334 3445566788889999999999999984 48899999999988542 3344444444443
No 78
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.86 E-value=3.1e-19 Score=189.91 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=179.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhc-CCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHH-HHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVL-RIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~-~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ad~vi~ 177 (479)
..-|+|.+|. +....+..+++... ..++.+-+|-...+ . .+++.+.++ .+-+-+ -.||.|-.
T Consensus 126 ~~~d~vwvhD---Yhl~l~p~~lr~~~~~~~igfFlHipfP~---------~---e~f~~lp~r~~il~gl-l~~dligF 189 (456)
T TIGR02400 126 QPGDIVWVHD---YHLMLLPAMLRELGVQNKIGFFLHIPFPS---------S---EIYRTLPWRRELLEGL-LAYDLVGF 189 (456)
T ss_pred CCCCEEEEec---chhhHHHHHHHhhCCCCeEEEEEeCCCCC---------h---HHHhhCCcHHHHHHHH-hcCCEEEE
Confidence 4468999999 77777777777664 45666777853211 1 111111000 001111 35899999
Q ss_pred eCHHHHHHHHHh----hC------------Ce--EEEecCC-CCCCCCCCChHH--HHHHHHhhhhcccCCCCccccccc
Q 011690 178 VTQAMQHELAQN----WG------------IK--ATVLYDQ-PPEFFHPTSLEE--KHELFCRLNKILHQPLGVQDCVSN 236 (479)
Q Consensus 178 vS~~~~~~l~~~----~~------------~~--~~vi~n~-~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
.|....+.+.+. ++ .. +.++||| |++.|.+..... +.. ...+.
T Consensus 190 ~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~-~~~lr--------------- 253 (456)
T TIGR02400 190 QTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKR-IAELR--------------- 253 (456)
T ss_pred CCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHH-HHHHH---------------
Confidence 888877666552 11 22 7799999 877776542111 111 00111
Q ss_pred cccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCc
Q 011690 237 AGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
.. + .++ .+|+++||+++.||++.+++|++.+.++
T Consensus 254 ------------------~~--~-~~~-~vIl~VgRLd~~KGi~~ll~A~~~ll~~------------------------ 287 (456)
T TIGR02400 254 ------------------ES--L-KGR-KLIIGVDRLDYSKGLPERLLAFERFLEE------------------------ 287 (456)
T ss_pred ------------------HH--c-CCC-eEEEEccccccccCHHHHHHHHHHHHHh------------------------
Confidence 01 1 233 4899999999999999999999998765
Q ss_pred ccCCCC----EEEEEEe-----cCCChHHHHHHHHHc--------C---CCcEEEecCCCCcchHHHHHHcCCEEEEccc
Q 011690 317 QYLYPR----LLFIITG-----KGPDKESYEEKIRRL--------R---LKRVAFRTMWLSAEDYPLLLGSADLGVCLHT 376 (479)
Q Consensus 317 ~~~~p~----~~l~IvG-----~G~~~~~l~~~~~~~--------~---l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~ 376 (479)
+|+ +.|+++| +|+..+.+++.++++ + ...|.+.+..++.+++..+|++||++|+|
T Consensus 288 ---~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~-- 362 (456)
T TIGR02400 288 ---HPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVT-- 362 (456)
T ss_pred ---CccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEEC--
Confidence 665 5677774 556666777777665 1 11244544338999999999999999998
Q ss_pred CCCCCCCcHHHHHHHhCCCc----EEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011690 377 SSSGLDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTL 450 (479)
Q Consensus 377 ~s~~e~~p~~llEama~G~P----VIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~ 450 (479)
|..||||++++||||||+| +|+|+.+|..+.+. +|+++ .|++++|++|.++++. ++++++++.+.++
T Consensus 363 -S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~---~~~er~~r~~~~~ 435 (456)
T TIGR02400 363 -PLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTM---PLEEREERHRAMM 435 (456)
T ss_pred -ccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 6789999999999999999 99999888877773 79998 5699999999999996 4566666655555
Q ss_pred Hh
Q 011690 451 EM 452 (479)
Q Consensus 451 ~~ 452 (479)
+.
T Consensus 436 ~~ 437 (456)
T TIGR02400 436 DK 437 (456)
T ss_pred HH
Confidence 53
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.85 E-value=4.5e-19 Score=185.26 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=174.6
Q ss_pred CCCcEEEEeCCCCcchHHHHHHH-HHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWA-SSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~-~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
.+||+|+++.|. + .+..+. +...++|++....++. .+ .+++.+.+|.+++.
T Consensus 103 ~kPDvVi~~~p~--~--~~~~l~~~~~~~iP~~~v~td~~----------~~--------------~~w~~~~~d~~~v~ 154 (391)
T PRK13608 103 EKPDLILLTFPT--P--VMSVLTEQFNINIPVATVMTDYR----------LH--------------KNWITPYSTRYYVA 154 (391)
T ss_pred hCcCEEEECCcH--H--HHHHHHHhcCCCCCEEEEeCCCC----------cc--------------cccccCCCCEEEEC
Confidence 899999997642 1 222222 2335788755333331 00 01233679999999
Q ss_pred CHHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 179 TQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
|+.+++.+.+. |++ +.++.++..+.|.... .+.....
T Consensus 155 s~~~~~~l~~~-gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~------------------------------------- 194 (391)
T PRK13608 155 TKETKQDFIDV-GIDPSTVKVTGIPIDNKFETPI--DQKQWLI------------------------------------- 194 (391)
T ss_pred CHHHHHHHHHc-CCCHHHEEEECeecChHhcccc--cHHHHHH-------------------------------------
Confidence 99999998775 765 6666665334443322 1112111
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEE-ecCCCh
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDK 334 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~Iv-G~G~~~ 334 (479)
.++++++++.+++++|++...|+++.+++++.. ..++++++++ |+++
T Consensus 195 ~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~------------------------------~~~~~~~vvv~G~~~-- 242 (391)
T PRK13608 195 DNNLDPDKQTILMSAGAFGVSKGFDTMITDILA------------------------------KSANAQVVMICGKSK-- 242 (391)
T ss_pred HcCCCCCCCEEEEECCCcccchhHHHHHHHHHh------------------------------cCCCceEEEEcCCCH--
Confidence 234666777788899999989999999998532 1567888655 5442
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Ccc----chhc
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSC----IEEL 408 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~----~~e~ 408 (479)
+..++..+..+. ++|.|.|+ .++++++|++||++|+. + .|+++.|||+||+|+|+++ .++ ...+
T Consensus 243 ~l~~~l~~~~~~~~~v~~~G~---~~~~~~~~~~aDl~I~k---~----gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~ 312 (391)
T PRK13608 243 ELKRSLTAKFKSNENVLILGY---TKHMNEWMASSQLMITK---P----GGITISEGLARCIPMIFLNPAPGQELENALY 312 (391)
T ss_pred HHHHHHHHHhccCCCeEEEec---cchHHHHHHhhhEEEeC---C----chHHHHHHHHhCCCEEECCCCCCcchhHHHH
Confidence 222233333333 68999997 57899999999999962 2 3569999999999999996 333 3345
Q ss_pred cccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 011690 409 VKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 472 (479)
Q Consensus 409 i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 472 (479)
+.+...|+..++++++++++.++++ +++.+++|++++++....++|+...+. +..++++
T Consensus 313 ~~~~G~g~~~~~~~~l~~~i~~ll~----~~~~~~~m~~~~~~~~~~~s~~~i~~~-l~~l~~~ 371 (391)
T PRK13608 313 FEEKGFGKIADTPEEAIKIVASLTN----GNEQLTNMISTMEQDKIKYATQTICRD-LLDLIGH 371 (391)
T ss_pred HHhCCcEEEeCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHhhh
Confidence 5677788888999999999999998 589999999999997666666655543 3344443
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=2.7e-19 Score=167.89 Aligned_cols=119 Identities=34% Similarity=0.463 Sum_probs=104.3
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCC-C
Q 011690 269 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-K 347 (479)
Q Consensus 269 ~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l-~ 347 (479)
++|++.+.||++.+++|+..+.++ .|+++++++|.++.....++.+.+++. +
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~---------------------------~~~~~~~i~G~~~~~~~~~~~~~~~~~~~ 161 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKER---------------------------GPDLKLVIAGDGPEREYLEELLAALLLLD 161 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCCChHHHHHHHHhcCCcc
Confidence 788889999999999999999875 789999999999887777776677776 7
Q ss_pred cEEEecCCC-CcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe
Q 011690 348 RVAFRTMWL-SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF 418 (479)
Q Consensus 348 ~V~f~G~~~-~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~ 418 (479)
+|.+.|. + +.+++..+++.||++++| +..+++|++++|||+||+|||+|+.++..|++.++.+|+++
T Consensus 162 ~v~~~~~-~~~~~~~~~~~~~~di~l~~---~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 162 RVIFLGG-LDPEELLALLLAAADVFVLP---SLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred cEEEeCC-CCcHHHHHHHhhcCCEEEec---ccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 9999997 6 556677777779999998 55568999999999999999999999999999999999875
No 81
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.85 E-value=6.9e-19 Score=181.98 Aligned_cols=246 Identities=18% Similarity=0.171 Sum_probs=161.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||++..++++..++ . +.+..|+|+++..++..+. +.. ... . .+.+.+|.+++.|
T Consensus 84 ~kPdivi~~~~~~~~~~~a-~-~a~~~~ip~i~~~~~~~~~----------~~~---~~~-----~-~~~~~~d~i~~~~ 142 (380)
T PRK00025 84 EPPDVFIGIDAPDFNLRLE-K-KLRKAGIPTIHYVSPSVWA----------WRQ---GRA-----F-KIAKATDHVLALF 142 (380)
T ss_pred cCCCEEEEeCCCCCCHHHH-H-HHHHCCCCEEEEeCCchhh----------cCc---hHH-----H-HHHHHHhhheeCC
Confidence 7999999987444433322 2 2345689988755432210 000 011 1 2346789999999
Q ss_pred HHHHHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccccccc
Q 011690 180 QAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 259 (479)
Q Consensus 180 ~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (479)
+..++.+.+. |.++.++.|...+...+.. .+..... .+++
T Consensus 143 ~~~~~~~~~~-g~~~~~~G~p~~~~~~~~~--~~~~~~~-------------------------------------~l~~ 182 (380)
T PRK00025 143 PFEAAFYDKL-GVPVTFVGHPLADAIPLLP--DRAAARA-------------------------------------RLGL 182 (380)
T ss_pred ccCHHHHHhc-CCCeEEECcCHHHhccccc--ChHHHHH-------------------------------------HcCC
Confidence 9988887654 7776665554112111111 1122211 2345
Q ss_pred CCCCCeEEEEEec-CCCC-CCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec-CCChHH
Q 011690 260 KPNRPALVVSSTS-WTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GPDKES 336 (479)
Q Consensus 260 ~~~~~~~i~~~g~-~~~~-K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~-G~~~~~ 336 (479)
+++++.++++.|+ .... +.++.+++|+..+.++ +|+++++++|. ++..+.
T Consensus 183 ~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~---------------------------~~~~~~ii~~~~~~~~~~ 235 (380)
T PRK00025 183 DPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR---------------------------YPDLRFVLPLVNPKRREQ 235 (380)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeEEEEecCChhhHHH
Confidence 5566655566553 3332 4478899999988765 78899999986 666777
Q ss_pred HHHHHHHc-CCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe---------------
Q 011690 337 YEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV--------------- 400 (479)
Q Consensus 337 l~~~~~~~-~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas--------------- 400 (479)
+++.++++ ++. +.+. .+++..+|+.||++|++ | |...+|||+||+|+|++
T Consensus 236 ~~~~~~~~~~~~-v~~~-----~~~~~~~~~~aDl~v~~---s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~ 301 (380)
T PRK00025 236 IEEALAEYAGLE-VTLL-----DGQKREAMAAADAALAA---S-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLV 301 (380)
T ss_pred HHHHHhhcCCCC-eEEE-----cccHHHHHHhCCEEEEC---c-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHH
Confidence 88877776 554 4442 35899999999999987 3 45778999999999987
Q ss_pred --cCccchhccccCc--cEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 401 --SYSCIEELVKVDK--NGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 401 --~~~~~~e~i~~~~--~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
+.+++++++.++. .+++. .+++++++.+.++++ |++.+++|++++.+
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~ 354 (380)
T PRK00025 302 KVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLA----DGARRQALLEGFTE 354 (380)
T ss_pred cCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHH
Confidence 4455567776553 34555 458999999999999 68999999888754
No 82
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.84 E-value=8.9e-19 Score=180.73 Aligned_cols=255 Identities=16% Similarity=0.114 Sum_probs=168.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+|+. ....+++.++++..++|++...++.. + .+...++..... ...+.+.||.+++.|
T Consensus 85 ~~pDiv~~~gd--~~~~la~a~aa~~~~ipv~h~~~g~~-s-----~~~~~~~~~~~~-------r~~~~~~ad~~~~~s 149 (365)
T TIGR00236 85 EKPDIVLVQGD--TTTTLAGALAAFYLQIPVGHVEAGLR-T-----GDRYSPMPEEIN-------RQLTGHIADLHFAPT 149 (365)
T ss_pred cCCCEEEEeCC--chHHHHHHHHHHHhCCCEEEEeCCCC-c-----CCCCCCCccHHH-------HHHHHHHHHhccCCC
Confidence 88999999973 34455566778888999764322211 0 000101101010 112345689999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 255 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (479)
+..++.+.+. |.+ +.+++|+ ....+.+........+..+
T Consensus 150 ~~~~~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~------------------------------------ 192 (365)
T TIGR00236 150 EQAKDNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSE------------------------------------ 192 (365)
T ss_pred HHHHHHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHh------------------------------------
Confidence 9999999875 764 7889998 3222211110001111111
Q ss_pred ccccCCCCCeEEEEEecC-CCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 256 DVFLKPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~-~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
++ .+++.++++.+|. ...|+++.+++|+..+.++ +|+++++++|.+..
T Consensus 193 -~~--~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~~vi~~~~~~- 241 (365)
T TIGR00236 193 -FG--EDKRYILLTLHRRENVGEPLENIFKAIREIVEE---------------------------FEDVQIVYPVHLNP- 241 (365)
T ss_pred -cC--CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHH---------------------------CCCCEEEEECCCCh-
Confidence 11 2234445544454 2458999999999998765 78899988864422
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe-cCccchhccccC
Q 011690 335 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVD 412 (479)
Q Consensus 335 ~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas-~~~~~~e~i~~~ 412 (479)
+..++..+.++. ++|.|.|. ++..++..+++.||+++.+ | |..++|||+||+|||++ +.++.+|+++.+
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~ad~vv~~---S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g 312 (365)
T TIGR00236 242 VVREPLHKHLGDSKRVHLIEP-LEYLDFLNLAANSHLILTD---S-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG 312 (365)
T ss_pred HHHHHHHHHhCCCCCEEEECC-CChHHHHHHHHhCCEEEEC---C-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC
Confidence 122223344555 68999998 8899999999999999876 3 23689999999999996 678888988766
Q ss_pred ccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 413 KNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 413 ~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
.++++ .+++++++++.++++ +++.+++++++...
T Consensus 313 -~~~lv~~d~~~i~~ai~~ll~----~~~~~~~~~~~~~~ 347 (365)
T TIGR00236 313 -TNKLVGTDKENITKAAKRLLT----DPDEYKKMSNASNP 347 (365)
T ss_pred -ceEEeCCCHHHHHHHHHHHHh----ChHHHHHhhhcCCC
Confidence 45555 689999999999998 57888888776643
No 83
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.84 E-value=3.2e-18 Score=169.58 Aligned_cols=292 Identities=18% Similarity=0.249 Sum_probs=202.9
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchh--hhhh-hhcC-CCch--hHHHHHHHhHHHHHHHHhhcCC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGY--TLLS-LSLG-RRSH--FVSIYRCFSVLRIEKYYGKMAN 173 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~--~~~~-~~~~-~~~~--~~~~~~~~~~~~~e~~~~~~ad 173 (479)
..||+.+-.- ....+ ....+.+.++|++.-.|-.-- +.+. +... ..+. ..++..|-.|.++=+.....||
T Consensus 149 ~~Pdi~IDtM-GY~fs---~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G~~ad 224 (465)
T KOG1387|consen 149 FPPDIFIDTM-GYPFS---YPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAGSKAD 224 (465)
T ss_pred CCchheEecC-CCcch---hHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhccccce
Confidence 6899875543 11112 223455789998887773211 1111 1100 0111 1122222223444556677899
Q ss_pred EEEEeCHHHHHHHHHhhCCe-EEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 174 GCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 174 ~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
.+++.|.....++.+.|+.. +.++|.. +.+ .-+. ..
T Consensus 225 ~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e--------~lks---~~------------------------------- 262 (465)
T KOG1387|consen 225 IVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTE--------DLKS---KF------------------------------- 262 (465)
T ss_pred EEEecchhhHHHHHHHhhccceeEEcCCCCHH--------HHHH---Hh-------------------------------
Confidence 99999999999999999865 6676643 322 1111 00
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
+-..++...++++|.+.|+|++. +++.++.+..+ |.+ = ...++++|+|+|.-
T Consensus 263 ------~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~------~pl----------~-----a~~~~iKL~ivGSc 314 (465)
T KOG1387|consen 263 ------GTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKN------EPL----------E-----ASVSPIKLIIVGSC 314 (465)
T ss_pred ------cccCCcceEEEEEeecCcccccH-HHHHHHHHHhc------Cch----------h-----hccCCceEEEEecc
Confidence 01123345899999999999999 66766665543 000 0 12467999999953
Q ss_pred ---CCh---HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 332 ---PDK---ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 332 ---~~~---~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
.+. ..++..+.++.+ ++|.|.-. +|.+++..+|+.|.++|-. -..|-||..++|+||+|+-.|+.+.||
T Consensus 315 RneeD~ervk~Lkd~a~~L~i~~~v~F~~N-~Py~~lv~lL~~a~iGvh~---MwNEHFGIsVVEyMAAGlIpi~h~SgG 390 (465)
T KOG1387|consen 315 RNEEDEERVKSLKDLAEELKIPKHVQFEKN-VPYEKLVELLGKATIGVHT---MWNEHFGISVVEYMAAGLIPIVHNSGG 390 (465)
T ss_pred CChhhHHHHHHHHHHHHhcCCccceEEEec-CCHHHHHHHhccceeehhh---hhhhhcchhHHHHHhcCceEEEeCCCC
Confidence 222 346678888999 68999998 9999999999999999953 366779999999999999988888777
Q ss_pred c-hhcccc---CccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---hhhhchHHHHHHHHHHHHHH
Q 011690 405 I-EELVKV---DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM---GLSARWATEWEEHAKPLITE 472 (479)
Q Consensus 405 ~-~e~i~~---~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~ 472 (479)
. -+++.+ ..+||++.+.++.|+++.++.+. +.+++..+|++|++. +++..+++.|+...++++++
T Consensus 391 P~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~---~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 391 PLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKL---NYDERNMMRRNARKSLARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred CceeeeeccCCccceeecCChHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhcc
Confidence 5 466655 35699999999999999999997 788899999998874 36777999999999998876
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.82 E-value=7e-19 Score=180.33 Aligned_cols=247 Identities=16% Similarity=0.081 Sum_probs=169.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+|+. ....+++.++++..++|++...|+.. + +..... ... . ...+.+.+|.+++.|
T Consensus 87 ~~pDvV~~~g~--~~~~~~~~~aa~~~~iPvv~~~~g~~-s-----~~~~~~-~~~---~-----r~~~~~~ad~~~~~s 149 (363)
T cd03786 87 EKPDLVLVLGD--TNETLAAALAAFKLGIPVAHVEAGLR-S-----FDRGMP-DEE---N-----RHAIDKLSDLHFAPT 149 (363)
T ss_pred hCCCEEEEeCC--chHHHHHHHHHHHcCCCEEEEecccc-c-----CCCCCC-chH---H-----HHHHHHHhhhccCCC
Confidence 69999999973 23445556677778999876555422 0 000111 111 1 223456789999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCC--CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQ--PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
+..++.+.+. |.+ +.+++|+ +...+.+.. ..... .+
T Consensus 150 ~~~~~~l~~~-G~~~~kI~vign~v~d~~~~~~~~--~~~~~------------------------------------~~ 190 (363)
T cd03786 150 EEARRNLLQE-GEPPERIFVVGNTMIDALLRLLEL--AKKEL------------------------------------IL 190 (363)
T ss_pred HHHHHHHHHc-CCCcccEEEECchHHHHHHHHHHh--hccch------------------------------------hh
Confidence 9999998765 665 7788887 211111110 00000 00
Q ss_pred cccccCCCCCeEEEEEecCCC---CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 255 IDVFLKPNRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~---~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
...+++ +++.++++.|+... .|+++.+++|++.+.+ . ++.+++.|.+
T Consensus 191 ~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~----------------------------~-~~~vi~~~~~ 240 (363)
T cd03786 191 ELLGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAE----------------------------E-DVPVVFPNHP 240 (363)
T ss_pred hhcccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHh----------------------------c-CCEEEEECCC
Confidence 112333 45567888888774 7999999999998753 1 5788888888
Q ss_pred CChHHHHHHHHHcCC--CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccchhc
Q 011690 332 PDKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEEL 408 (479)
Q Consensus 332 ~~~~~l~~~~~~~~l--~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~e~ 408 (479)
+.++.+++.++++++ ++|.|.|. ...+++..+|++||++|.+ |.+ .+.|||++|+|||+++ .++..+.
T Consensus 241 ~~~~~l~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~ad~~v~~---Sgg-----i~~Ea~~~g~PvI~~~~~~~~~~~ 311 (363)
T cd03786 241 RTRPRIREAGLEFLGHHPNVLLISP-LGYLYFLLLLKNADLVLTD---SGG-----IQEEASFLGVPVLNLRDRTERPET 311 (363)
T ss_pred ChHHHHHHHHHhhccCCCCEEEECC-cCHHHHHHHHHcCcEEEEc---Ccc-----HHhhhhhcCCCEEeeCCCCccchh
Confidence 888999999888875 68999997 7889999999999999987 332 5799999999999997 4546677
Q ss_pred cccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011690 409 VKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLR 446 (479)
Q Consensus 409 i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~ 446 (479)
++++. +..+ ++++++++++.+++++ +..+..|+
T Consensus 312 ~~~g~-~~~~~~~~~~i~~~i~~ll~~----~~~~~~~~ 345 (363)
T cd03786 312 VESGT-NVLVGTDPEAILAAIEKLLSD----EFAYSLMS 345 (363)
T ss_pred hheee-EEecCCCHHHHHHHHHHHhcC----chhhhcCC
Confidence 76553 4444 4699999999999984 56555554
No 85
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.80 E-value=3.3e-17 Score=184.69 Aligned_cols=281 Identities=10% Similarity=0.098 Sum_probs=186.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhH--HHHHHHHhhcCCEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV--LRIEKYYGKMANGCL 176 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~ad~vi 176 (479)
..-|+|-+|. +..+.+..+++.. .+.++.+-+|....+. -+++++-. ..++.+ -.||.|-
T Consensus 146 ~~~d~vWvhD---YhL~llp~~lR~~~~~~~igfFlHiPFPs~------------e~fr~lp~r~~il~gl--l~aDlig 208 (797)
T PLN03063 146 EEGDVVWCHD---YHLMFLPQYLKEYNNKMKVGWFLHTPFPSS------------EIYKTLPSRSELLRAV--LTADLIG 208 (797)
T ss_pred CCCCEEEEec---chhhhHHHHHHHhCCCCcEEEEecCCCCCH------------HHHhhCCCHHHHHHHH--hcCCEEE
Confidence 3457999999 7777777777765 4567777777642111 11111100 001111 2478888
Q ss_pred EeCHHHHHHHHHhh----------------CC--eEEEecCC-CCCCCCCCCh--HHHHHHHHhhhhcccCCCCcccccc
Q 011690 177 CVTQAMQHELAQNW----------------GI--KATVLYDQ-PPEFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVS 235 (479)
Q Consensus 177 ~vS~~~~~~l~~~~----------------~~--~~~vi~n~-~~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
+.|......+.+.. |. ++.++||| +++.|.+... +.+.. ...+..
T Consensus 209 F~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~-~~~lr~------------- 274 (797)
T PLN03063 209 FHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQH-MKELKR------------- 274 (797)
T ss_pred eCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHH-HHHHHH-------------
Confidence 87777666655411 11 27799999 7677754321 11111 111110
Q ss_pred ccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccC
Q 011690 236 NAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDG 315 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (479)
...+++ +|+++||+.+.||++.+++|+..+.++
T Consensus 275 -----------------------~~~~~~-lIl~VgRLd~~KGi~~lL~Afe~lL~~----------------------- 307 (797)
T PLN03063 275 -----------------------FFAGRK-VILGVDRLDMIKGIPQKYLAFEKFLEE----------------------- 307 (797)
T ss_pred -----------------------hcCCCe-EEEEecccccccCHHHHHHHHHHHHHh-----------------------
Confidence 012343 899999999999999999999998775
Q ss_pred cccCCCCE----EEEEE-----ecCCChHHHHHHHHHcC--CC---------cEEEecCCCCcchHHHHHHcCCEEEEcc
Q 011690 316 KQYLYPRL----LFIIT-----GKGPDKESYEEKIRRLR--LK---------RVAFRTMWLSAEDYPLLLGSADLGVCLH 375 (479)
Q Consensus 316 ~~~~~p~~----~l~Iv-----G~G~~~~~l~~~~~~~~--l~---------~V~f~G~~~~~~~~~~~l~~adi~v~p~ 375 (479)
+|++ .|+.+ |+|+..+.+++.++++. ++ -|.+.+..++.+++..+|+.||++|+|
T Consensus 308 ----~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvt- 382 (797)
T PLN03063 308 ----NPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVT- 382 (797)
T ss_pred ----CccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeC-
Confidence 7765 34433 34566667777777663 21 244454348999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHhCCCc----EEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011690 376 TSSSGLDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGT 449 (479)
Q Consensus 376 ~~s~~e~~p~~llEama~G~P----VIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~ 449 (479)
|..||++++++||||||+| +|+|..+|..+.+ +.+|+++ .|++++|++|.++++. ++++++...+..
T Consensus 383 --SlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~ 455 (797)
T PLN03063 383 --SLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNM---SDEERETRHRHN 455 (797)
T ss_pred --ccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 7789999999999999999 9999998888876 5579999 5699999999999995 466666655555
Q ss_pred HHhhhhhchHHHHHHHHHHHHH
Q 011690 450 LEMGLSARWATEWEEHAKPLIT 471 (479)
Q Consensus 450 ~~~~~~~~w~~~~~~~~~~~~~ 471 (479)
++....++|. .|.+....-++
T Consensus 456 ~~~v~~~~~~-~Wa~~fl~~l~ 476 (797)
T PLN03063 456 FQYVKTHSAQ-KWADDFMSELN 476 (797)
T ss_pred HHhhhhCCHH-HHHHHHHHHHH
Confidence 5544455554 44444333333
No 86
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=3.1e-16 Score=166.57 Aligned_cols=314 Identities=16% Similarity=0.112 Sum_probs=208.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHH----hcCCcEEEEecCchhhhhhh-h-cCC-CchhHHHH----HHHhHHHHHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASS----LRRSAFIVDWHNFGYTLLSL-S-LGR-RSHFVSIY----RCFSVLRIEKYY 168 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~----~~~~~~ii~~h~~~~~~~~~-~-~~~-~~~~~~~~----~~~~~~~~e~~~ 168 (479)
..|||||+|+ +.+.++..+.+. ...+|.|+|+|+..|.-..- . ... .-+...+. .++......|.-
T Consensus 129 ~~pDIvH~hD---Wqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~g 205 (487)
T COG0297 129 WLPDIVHAHD---WQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGG 205 (487)
T ss_pred CCCCEEEeec---HHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhh
Confidence 4799999999 777777766666 45799999999876421100 0 000 00000000 000001124555
Q ss_pred hhcCCEEEEeCHHHHHHHHH-hhC-----------CeEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCcccccc
Q 011690 169 GKMANGCLCVTQAMQHELAQ-NWG-----------IKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVS 235 (479)
Q Consensus 169 ~~~ad~vi~vS~~~~~~l~~-~~~-----------~~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (479)
...||.|.+||+.-.+++.. .+| .+..-|.|| |.+.+.|........
T Consensus 206 i~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~-------------------- 265 (487)
T COG0297 206 LYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAA-------------------- 265 (487)
T ss_pred heeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhc--------------------
Confidence 56799999999999988872 222 226778888 777676653211100
Q ss_pred ccccCCcccccchhccccccccccCC--CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhc
Q 011690 236 NAGMEGQKADETIFTSLAGIDVFLKP--NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEIS 313 (479)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 313 (479)
++..+--.++...... ....+++.. +.| ++.++||++.+||++.+++|+..+.+.
T Consensus 266 ~y~~~~~~~k~~nk~~-L~~~~gL~~~~~~p-l~~~vsRl~~QKG~dl~~~~i~~~l~~--------------------- 322 (487)
T COG0297 266 NYSAEVLPAKAENKVA-LQERLGLDVDLPGP-LFGFVSRLTAQKGLDLLLEAIDELLEQ--------------------- 322 (487)
T ss_pred cCCccchhhhHHHHHH-HHHHhCCCCCCCCc-EEEEeeccccccchhHHHHHHHHHHHh---------------------
Confidence 0000000000000000 112334542 345 899999999999999999999998864
Q ss_pred cCcccCCCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHH
Q 011690 314 DGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF 391 (479)
Q Consensus 314 ~~~~~~~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEam 391 (479)
.++|+|.|.|. ..+.+...++++. .++.+.- |.+..-...+++.||++++| |..|++|.+-++||
T Consensus 323 --------~~~~vilG~gd~~le~~~~~la~~~~-~~~~~~i-~~~~~la~~i~agaD~~lmP---SrfEPcGL~ql~am 389 (487)
T COG0297 323 --------GWQLVLLGTGDPELEEALRALASRHP-GRVLVVI-GYDEPLAHLIYAGADVILMP---SRFEPCGLTQLYAM 389 (487)
T ss_pred --------CceEEEEecCcHHHHHHHHHHHHhcC-ceEEEEe-eecHHHHHHHHhcCCEEEeC---CcCcCCcHHHHHHH
Confidence 39999999992 2233444444432 2444444 47888899999999999999 89999999999999
Q ss_pred hCCCcEEEecCccchhcccc--------CccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHH
Q 011690 392 GCGLPVCAVSYSCIEELVKV--------DKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 461 (479)
Q Consensus 392 a~G~PVIas~~~~~~e~i~~--------~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 461 (479)
..|++.|+..+||..+.|.+ ..+|+++ .++++++.+|.+.+.-+..++...+.++.++-. ..++|+..
T Consensus 390 ryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~s 467 (487)
T COG0297 390 RYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMG--ADFSWDLS 467 (487)
T ss_pred HcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc--cccCchhH
Confidence 99999999999999998875 5789999 668999999998887655455557777777665 47899888
Q ss_pred HHHHHHHHHHHHHh
Q 011690 462 WEEHAKPLITEVIS 475 (479)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (479)
-++ -.++++.+++
T Consensus 468 a~~-y~~lY~~~~~ 480 (487)
T COG0297 468 AKE-YVELYKPLLS 480 (487)
T ss_pred HHH-HHHHHHHHhc
Confidence 765 4556666554
No 87
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=4.1e-17 Score=171.46 Aligned_cols=378 Identities=17% Similarity=0.118 Sum_probs=217.3
Q ss_pred CcceEEEEEecCCCCChhHHHH-HHHHHh---------hCCCcEEEEecCCCCC------c--ccccC-CCCeEEEEeec
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQ-ALSLAR---------QMSLEVDVVAYGGSKP------H--AAILE-HPSIHIHTMTQ 63 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~-a~~La~---------~~G~eV~Vv~~~~~~~------~--~~~~~-~~gi~i~~~~~ 63 (479)
...++.+.....+|++.|-... +..+.. . |++|.+++...... . ..... ..++.++...
T Consensus 34 ~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~-G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~- 111 (495)
T KOG0853|consen 34 FEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDT-GGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDW- 111 (495)
T ss_pred chhheeeccccccCchHHHhHHHHHHHHhcccccCCCCC-CceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEee-
Confidence 4466777777788887777665 555555 5 99999998664433 0 00111 1345555544
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcC----CcEEEEecCchh
Q 011690 64 WPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRR----SAFIVDWHNFGY 139 (479)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~----~~~ii~~h~~~~ 139 (479)
. |.... ..... ....+.+..+..-+..+.....+.|.++... . ....++...+.+ .+++.+.|.. .
T Consensus 112 -l-P~~~~-~~~~~-~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~---~--~~~~~l~~~~~~p~~~~~i~~~~h~~-~ 181 (495)
T KOG0853|consen 112 -L-PRAMG-QFLEQ-VAGCAYLRILRIPFGILFKWAEKVDPIIEDF---V--SACVPLLKQLSGPDVIIKIYFYCHFP-D 181 (495)
T ss_pred -c-Ccccc-hhhhh-hhccceeEEEEeccchhhhhhhhhceeecch---H--HHHHHHHHHhcCCcccceeEEeccch-H
Confidence 1 11110 00000 0000000000000001111124667776665 2 222333444443 3334455543 3
Q ss_pred hhhhhhcCCCchhH-HHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhh---CC-eEEEecCC-CCCCCCCCChHHH
Q 011690 140 TLLSLSLGRRSHFV-SIYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNW---GI-KATVLYDQ-PPEFFHPTSLEEK 213 (479)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~---~~-~~~vi~n~-~~~~f~~~~~~~~ 213 (479)
.++..+.+-...+. ....+. |......++.+++.|......+...+ +. ++.+.|-. +.+.+.+...+.+
T Consensus 182 ~lla~r~g~~~~l~~~~l~~~-----e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~ 256 (495)
T KOG0853|consen 182 SLLAKRLGVLKVLYRHALDKI-----EEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESH 256 (495)
T ss_pred HHhccccCccceeehhhhhhh-----hhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccc
Confidence 44443322111111 111122 44444568999998888877765542 11 15555554 3333433211111
Q ss_pred HHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHH
Q 011690 214 HELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRV 293 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~ 293 (479)
..|+.-.|-..+....+ .+.....++.|.||+..+++|+..+..+.
T Consensus 257 ---------------------------------~~~~~~~r~~~~v~~~d-~~~~siN~~~pgkd~~l~l~a~~~~~~~i 302 (495)
T KOG0853|consen 257 ---------------------------------LELRLPVRLYRGVSGID-RFFPSINRFEPGKDQDLALPAFTLLHDSI 302 (495)
T ss_pred ---------------------------------hhcccccceeeeecccc-eEeeeeeecCCCCCceeehhhHHhhhccc
Confidence 11111112222222222 47788899999999999999999988651
Q ss_pred hhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec-CC---------ChHHHHHHHHHcCC--CcEEEecCCCCcchH
Q 011690 294 AAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GP---------DKESYEEKIRRLRL--KRVAFRTMWLSAEDY 361 (479)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~-G~---------~~~~l~~~~~~~~l--~~V~f~G~~~~~~~~ 361 (479)
.. ...++.++.++|+ |. +.+++.+.++++++ +.|.|+.. -++.+.
T Consensus 303 ~~----------------------~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s-~~~~~~ 359 (495)
T KOG0853|consen 303 PE----------------------PSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPS-TTRVAK 359 (495)
T ss_pred CC----------------------CCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecC-CchHHH
Confidence 10 2356788999883 21 22467778999988 56888776 344444
Q ss_pred HHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCC-HH---HHHHHHHHHHhcCCC
Q 011690 362 PLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSS-SS---ELADQLLMLFKGFPD 437 (479)
Q Consensus 362 ~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~-~~---~la~~l~~l~~~~~~ 437 (479)
+...||.-+..++.. +|.||.+++|||+||+||+||+.||..|++.++.+|++++. .+ .+|+++.++..
T Consensus 360 --yrl~adt~~v~~qPa-~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~---- 432 (495)
T KOG0853|consen 360 --YRLAADTKGVLYQPA-NEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRR---- 432 (495)
T ss_pred --HHHHHhcceEEecCC-CCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhc----
Confidence 555555544434444 49999999999999999999999999999999999999944 44 59999999999
Q ss_pred CHHHHHHHHHHHHHhhh-hhchHHH
Q 011690 438 DSDVLKKLRNGTLEMGL-SARWATE 461 (479)
Q Consensus 438 ~~~~~~~~~~~~~~~~~-~~~w~~~ 461 (479)
|++.+.+|++++++.-. .++|...
T Consensus 433 ~p~l~~~~~~~G~~rV~e~fs~~~~ 457 (495)
T KOG0853|consen 433 DPELWARMGKNGLKRVKEMFSWQHY 457 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 69999999999988653 4788333
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=6.6e-16 Score=150.61 Aligned_cols=286 Identities=24% Similarity=0.316 Sum_probs=191.3
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHH
Q 011690 102 PDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQA 181 (479)
Q Consensus 102 ~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 181 (479)
+|+++.+..................+.+.+..+|............ .......... ...........++.+++.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRL--LLLLGLLRLL-LKRLKKALRLLADRVIAVSPA 160 (381)
T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccc--hhhHHHHHHH-HHHHHHhccccccEEEECCHH
Confidence 5898887743333212233334455677888888765221110000 0000000000 000011111147888888888
Q ss_pred HHHHHHHhhCC-eEEEecCC-CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccccccc
Q 011690 182 MQHELAQNWGI-KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 259 (479)
Q Consensus 182 ~~~~l~~~~~~-~~~vi~n~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (479)
....+...+.. +..+++++ +.+.+.+.. +..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~ 193 (381)
T COG0438 161 LKELLEALGVPNKIVVIPNGIDTEKFAPAR-----------------------------------------------IGL 193 (381)
T ss_pred HHHHHHHhCCCCCceEecCCcCHHHcCccc-----------------------------------------------cCC
Confidence 76655555333 37777887 444443310 011
Q ss_pred CCCC-CeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC-hHHH
Q 011690 260 KPNR-PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESY 337 (479)
Q Consensus 260 ~~~~-~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~-~~~l 337 (479)
.++. ...++++|++.+.||++.+++++..+.++ .+++.+.++|.|+. .+.+
T Consensus 194 ~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~~~~~g~~~~~~~~~ 246 (381)
T COG0438 194 LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKR---------------------------GPDIKLVIVGDGPERREEL 246 (381)
T ss_pred CcccCceEEEEeeccChhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEEcCCCccHHHH
Confidence 1222 25899999999999999999999999875 55699999999987 3677
Q ss_pred HHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEE
Q 011690 338 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 416 (479)
Q Consensus 338 ~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~ 416 (479)
.+.+++.+. ++|.|.|. ++.+++..+++.||++++| +..|++|..++|||++|+|||+++.++..|++.++.+|+
T Consensus 247 ~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~v~p---s~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~ 322 (381)
T COG0438 247 EKLAKKLGLEDNVKFLGY-VPDEELAELLASADVFVLP---SLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGL 322 (381)
T ss_pred HHHHHHhCCCCcEEEecc-cCHHHHHHHHHhCCEEEec---cccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceE
Confidence 778888877 78999996 8888999999999999999 444889999999999999999999999999998887788
Q ss_pred EeC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhchHHHHHHHHHHHHHHH
Q 011690 417 LFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEV 473 (479)
Q Consensus 417 l~~--~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~ 473 (479)
++. +.+++++++..++++ .+.++.+.+.+.+.. ..++|+...+. ..+++..+
T Consensus 323 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 377 (381)
T COG0438 323 LVPPGDVEELADALEQLLED----PELREELGEAARERVEEEFSWERIAEQ-LLELYEEL 377 (381)
T ss_pred ecCCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHH
Confidence 663 479999999999994 566666665333322 46788777643 34444433
No 89
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.73 E-value=1.2e-15 Score=171.38 Aligned_cols=271 Identities=14% Similarity=0.073 Sum_probs=172.9
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhc-CCcEEEEecCchhh--hhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYT--LLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCL 176 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~-~~~~ii~~h~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 176 (479)
..-|+|-+|. +..+.+..+++... +.++-+-+|-...+ ++.. +. ....+. +- .-.+|.+-
T Consensus 132 ~~~d~vwvhD---Yhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~-lp---~~~~ll--------~~--ll~~Dlig 194 (726)
T PRK14501 132 RPGDVVWVHD---YQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRL-LP---WREEIL--------EG--LLGADLIG 194 (726)
T ss_pred CCCCEEEEeC---chhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhh-CC---ChHHHH--------HH--HhcCCeEE
Confidence 4458999999 77777777776653 45666667754211 1110 00 000111 11 12477777
Q ss_pred EeCHHHHHHHHHh----h------------CC--eEEEecCC-CCCCCCCCChHHH-HHHHHhhhhcccCCCCccccccc
Q 011690 177 CVTQAMQHELAQN----W------------GI--KATVLYDQ-PPEFFHPTSLEEK-HELFCRLNKILHQPLGVQDCVSN 236 (479)
Q Consensus 177 ~vS~~~~~~l~~~----~------------~~--~~~vi~n~-~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
..+....+.+.+. . |. ++.++||| |++.|.+...... .+...++..
T Consensus 195 f~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~-------------- 260 (726)
T PRK14501 195 FHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQ-------------- 260 (726)
T ss_pred eCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHH--------------
Confidence 7777655444331 1 21 27889999 8777765431111 010111110
Q ss_pred cccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCc
Q 011690 237 AGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
..+++ .+|+++||+.+.||+..+++|+..+.++
T Consensus 261 ----------------------~~~~~-~~il~VgRl~~~Kgi~~~l~A~~~ll~~------------------------ 293 (726)
T PRK14501 261 ----------------------DLRGR-KIILSIDRLDYTKGIPRRLLAFERFLEK------------------------ 293 (726)
T ss_pred ----------------------HcCCC-EEEEEecCcccccCHHHHHHHHHHHHHh------------------------
Confidence 11233 4899999999999999999999998765
Q ss_pred ccCCCC----EEEEEEe----cC-CChHHHHHHHHHc----C-------CC-cEEEecCCCCcchHHHHHHcCCEEEEcc
Q 011690 317 QYLYPR----LLFIITG----KG-PDKESYEEKIRRL----R-------LK-RVAFRTMWLSAEDYPLLLGSADLGVCLH 375 (479)
Q Consensus 317 ~~~~p~----~~l~IvG----~G-~~~~~l~~~~~~~----~-------l~-~V~f~G~~~~~~~~~~~l~~adi~v~p~ 375 (479)
+|+ ++|+++| +| +..+.+++.+.++ + .. -+.|.|. ++.++++.+|++||++++|
T Consensus 294 ---~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~-~~~~~l~~ly~~aDv~v~~- 368 (726)
T PRK14501 294 ---NPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRS-LPFEELVALYRAADVALVT- 368 (726)
T ss_pred ---CccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCC-CCHHHHHHHHHhccEEEec-
Confidence 665 6898887 33 3344555555443 1 11 2456676 9999999999999999998
Q ss_pred cCCCCCCCcHHHHHHHhC-----CCcEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011690 376 TSSSGLDLPMKVVDMFGC-----GLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNG 448 (479)
Q Consensus 376 ~~s~~e~~p~~llEama~-----G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~ 448 (479)
|..||||++++||||| |+||++...|+.+++. .|+++ .|++++|++|.++++. +.+++....+.
T Consensus 369 --S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~---~~~e~~~r~~~ 439 (726)
T PRK14501 369 --PLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEM---PEEEQRERMQA 439 (726)
T ss_pred --ccccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 6778999999999999 5567777788888876 48888 5699999999999985 33343333334
Q ss_pred HHHhhhhhchHHHH
Q 011690 449 TLEMGLSARWATEW 462 (479)
Q Consensus 449 ~~~~~~~~~w~~~~ 462 (479)
+++....++|..-.
T Consensus 440 ~~~~v~~~~~~~w~ 453 (726)
T PRK14501 440 MQERLRRYDVHKWA 453 (726)
T ss_pred HHHHHHhCCHHHHH
Confidence 44433344554333
No 90
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.72 E-value=4.1e-17 Score=143.80 Aligned_cols=130 Identities=28% Similarity=0.438 Sum_probs=96.6
Q ss_pred eEEEEEecCCCCCCHHHHHH-HHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHH
Q 011690 265 ALVVSSTSWTPDEDFGILLE-AALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 343 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lie-A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~ 343 (479)
.++++.|++.+.|+++.+++ |+..+.++ .|+++|+|+|.++. .+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~---------------------------~p~~~l~i~G~~~~--~l~~~--- 50 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEK---------------------------HPDIELIIIGNGPD--ELKRL--- 50 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHH---------------------------STTEEEEEECESS---HHCCH---
T ss_pred ccccccccccccccccchhhhHHHHHHHH---------------------------CcCEEEEEEeCCHH--HHHHh---
Confidence 47899999999999999999 99999887 89999999999876 23333
Q ss_pred cCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEe-CCHH
Q 011690 344 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSS 422 (479)
Q Consensus 344 ~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~-~~~~ 422 (479)
..++|.|+|. + +++.+++++||++++|+. .++++|.+++|||++|+|||+++. +..+++.....|.++ ++++
T Consensus 51 -~~~~v~~~g~-~--~e~~~~l~~~dv~l~p~~--~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 51 -RRPNVRFHGF-V--EELPEILAAADVGLIPSR--FNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp -HHCTEEEE-S----HHHHHHHHC-SEEEE-BS--S-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HH
T ss_pred -cCCCEEEcCC-H--HHHHHHHHhCCEEEEEee--CCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHH
Confidence 1268999997 6 689999999999999842 345799999999999999999999 566677656667666 7799
Q ss_pred HHHHHHHHHHh
Q 011690 423 ELADQLLMLFK 433 (479)
Q Consensus 423 ~la~~l~~l~~ 433 (479)
+++++|.++++
T Consensus 124 ~l~~~i~~l~~ 134 (135)
T PF13692_consen 124 ELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999987
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=7e-15 Score=153.60 Aligned_cols=314 Identities=13% Similarity=0.054 Sum_probs=182.9
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011690 23 YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASP 102 (479)
Q Consensus 23 ~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 102 (479)
..+..|.++ +++|.+++.++.... ......+.++..++ ..++....+.+..+.+.+.+ ...++ +..+|
T Consensus 23 al~~~l~~~-~~~~~~~g~gg~~m~-~~g~~~~~~~~~l~-----v~G~~~~l~~~~~~~~~~~~----~~~~l-~~~kP 90 (385)
T TIGR00215 23 GLRQQLKEH-YPNARFIGVAGPRMA-AEGCEVLYSMEELS-----VMGLREVLGRLGRLLKIRKE----VVQLA-KQAKP 90 (385)
T ss_pred HHHHHHHhc-CCCcEEEEEccHHHH-hCcCccccChHHhh-----hccHHHHHHHHHHHHHHHHH----HHHHH-HhcCC
Confidence 345555554 899999986653211 11111123333333 11111111222222233332 22222 23899
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHH
Q 011690 103 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAM 182 (479)
Q Consensus 103 DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 182 (479)
|+|+..+-++++..+ + .+++..|+|+++.. .+ ..+.. ... - .+.+.+.+|.++|+++..
T Consensus 91 d~vi~~g~~~~~~~~-a-~aa~~~gip~v~~i--~P-~~waw----~~~-------~-----~r~l~~~~d~v~~~~~~e 149 (385)
T TIGR00215 91 DLLVGIDAPDFNLTK-E-LKKKDPGIKIIYYI--SP-QVWAW----RKW-------R-----AKKIEKATDFLLAILPFE 149 (385)
T ss_pred CEEEEeCCCCccHHH-H-HHHhhCCCCEEEEe--CC-cHhhc----Ccc-------h-----HHHHHHHHhHhhccCCCc
Confidence 999999855554332 2 24556799988543 11 11110 000 0 334557799999999999
Q ss_pred HHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCC
Q 011690 183 QHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 262 (479)
Q Consensus 183 ~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (479)
.+.+.+ +|.++.++.|+..+.+.+... .+.+.+. .++++++
T Consensus 150 ~~~~~~-~g~~~~~vGnPv~~~~~~~~~-~~~~~r~-------------------------------------~lgl~~~ 190 (385)
T TIGR00215 150 KAFYQK-KNVPCRFVGHPLLDAIPLYKP-DRKSARE-------------------------------------KLGIDHN 190 (385)
T ss_pred HHHHHh-cCCCEEEECCchhhhccccCC-CHHHHHH-------------------------------------HcCCCCC
Confidence 888764 477877777763222221100 1112111 2345566
Q ss_pred CCeEEEEEe-cCCC-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEE-ecCCChHHHHH
Q 011690 263 RPALVVSST-SWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEE 339 (479)
Q Consensus 263 ~~~~i~~~g-~~~~-~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~Iv-G~G~~~~~l~~ 339 (479)
++.+++..| |..+ .|++..+++|+..+.++ .|++++++. +.+...+.+++
T Consensus 191 ~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~---------------------------~p~~~~vi~~~~~~~~~~~~~ 243 (385)
T TIGR00215 191 GETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ---------------------------EPDLRRVLPVVNFKRRLQFEQ 243 (385)
T ss_pred CCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchhHHHHHH
Confidence 775655555 5555 68999999999998765 789988665 46666777777
Q ss_pred HHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccchh----------
Q 011690 340 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEE---------- 407 (479)
Q Consensus 340 ~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~e---------- 407 (479)
..++++. .+|.+.+. ++..+|++||++|++ | |.+.+|+|+||+|+|.+. .+..+.
T Consensus 244 ~~~~~~~~~~v~~~~~-----~~~~~l~aADl~V~~---S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~ 310 (385)
T TIGR00215 244 IKAEYGPDLQLHLIDG-----DARKAMFAADAALLA---S-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTD 310 (385)
T ss_pred HHHHhCCCCcEEEECc-----hHHHHHHhCCEEeec---C-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCC
Confidence 7777665 35665542 567899999999997 3 446779999999988873 322222
Q ss_pred ------ccccCccEEEe--C--CHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHh
Q 011690 408 ------LVKVDKNGLLF--S--SSSELADQLLMLFKGFPDDS----DVLKKLRNGTLEM 452 (479)
Q Consensus 408 ------~i~~~~~G~l~--~--~~~~la~~l~~l~~~~~~~~----~~~~~~~~~~~~~ 452 (479)
++.+....-.+ + +++.+++.+.++++ |+ +.++++++...+.
T Consensus 311 ~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~----~~~~~~~~~~~~~~~~~~~ 365 (385)
T TIGR00215 311 YISLPNILANRLLVPELLQEECTPHPLAIALLLLLE----NGLKAYKEMHRERQFFEEL 365 (385)
T ss_pred eeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhc----CCcccHHHHHHHHHHHHHH
Confidence 22221111111 2 48899999999998 46 7777776666554
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.62 E-value=1.8e-14 Score=155.58 Aligned_cols=159 Identities=20% Similarity=0.216 Sum_probs=134.4
Q ss_pred eEEEEEe--cCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh---HHHHH
Q 011690 265 ALVVSST--SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESYEE 339 (479)
Q Consensus 265 ~~i~~~g--~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~---~~l~~ 339 (479)
..+++++ |+ ++|.++.+|+|+..+..+ +|+++|.+.|.|... +.+++
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~---------------------------~p~~~L~~~gy~~~~~~~~~l~~ 371 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILK---------------------------NPDYELKILTYNNDNDITQLLED 371 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhh---------------------------CCCeEEEEEEecCchhHHHHHHH
Confidence 3677888 99 999999999999999886 999999999987543 56666
Q ss_pred HHHHcCCC------------------------------cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHH
Q 011690 340 KIRRLRLK------------------------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD 389 (479)
Q Consensus 340 ~~~~~~l~------------------------------~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llE 389 (479)
.+++++++ +|.|.|. .+..++...|..+.++|.+ |..+||+ ..+|
T Consensus 372 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy-~~e~dl~~~~~~arl~id~---s~~eg~~-~~ie 446 (519)
T TIGR03713 372 ILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTL-TNEEDLISALDKLRLIIDL---SKEPDLY-TQIS 446 (519)
T ss_pred HHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEec-CCHHHHHHHHhhheEEEEC---CCCCChH-HHHH
Confidence 66666443 7999997 5555999999999999998 7789999 9999
Q ss_pred HHhCCCcEEEecCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHH
Q 011690 390 MFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 463 (479)
Q Consensus 390 ama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 463 (479)
|++.|+|+| + -+..++|++++||+++++.++|++++..++. +++.++++..++.+....++=+.-|+
T Consensus 447 AiS~GiPqI--n-yg~~~~V~d~~NG~li~d~~~l~~al~~~L~----~~~~wn~~~~~sy~~~~~yS~~~i~~ 513 (519)
T TIGR03713 447 GISAGIPQI--N-KVETDYVEHNKNGYIIDDISELLKALDYYLD----NLKNWNYSLAYSIKLIDDYSSENIIE 513 (519)
T ss_pred HHHcCCCee--e-cCCceeeEcCCCcEEeCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999 3 3457999999999999999999999999999 58899999999888665555554443
No 93
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.56 E-value=2.1e-12 Score=137.94 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=112.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCC----EEEEEEecCC--------
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKGP-------- 332 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~l~IvG~G~-------- 332 (479)
.+|++++|+++.||+...++|+..+.++ +|+ ++|+++|.+.
T Consensus 286 kiIl~VDRLDy~KGI~~kl~Afe~~L~~---------------------------~Pe~~gkv~Lvqi~~psr~~v~~y~ 338 (487)
T TIGR02398 286 KLILSAERVDYTKGILEKLNAYERLLER---------------------------RPELLGKVTLVTACVPAASGMTIYD 338 (487)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHHh---------------------------CccccCceEEEEEeCCCcccchHHH
Confidence 4899999999999999999999998775 775 7999998653
Q ss_pred -ChHHHHHHHHHc-------CC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC----cEEE
Q 011690 333 -DKESYEEKIRRL-------RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCA 399 (479)
Q Consensus 333 -~~~~l~~~~~~~-------~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~----PVIa 399 (479)
.+.++++.+.+. +. +-+.|.+. ++.+++..+|+.||+++++ +..+|+.++..|+|+|+. |+|.
T Consensus 339 ~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~-v~~~el~alYr~ADV~lvT---~lrDGmNLVa~Eyva~~~~~~GvLIL 414 (487)
T TIGR02398 339 ELQGQIEQAVGRINGRFARIGWTPLQFFTRS-LPYEEVSAWFAMADVMWIT---PLRDGLNLVAKEYVAAQGLLDGVLVL 414 (487)
T ss_pred HHHHHHHHHHHHHhhccCCCCCccEEEEcCC-CCHHHHHHHHHhCCEEEEC---ccccccCcchhhHHhhhcCCCCCEEE
Confidence 233444444443 34 33667777 9999999999999999998 677888889999999998 9999
Q ss_pred ecCccchhccccCccEEEe--CCHHHHHHHHHHHHhc
Q 011690 400 VSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKG 434 (479)
Q Consensus 400 s~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~ 434 (479)
|..+|..+.+ ..++++ -|++++|++|.+.++.
T Consensus 415 SefaGaa~~l---~~AllVNP~d~~~~A~ai~~AL~m 448 (487)
T TIGR02398 415 SEFAGAAVEL---KGALLTNPYDPVRMDETIYVALAM 448 (487)
T ss_pred eccccchhhc---CCCEEECCCCHHHHHHHHHHHHcC
Confidence 9988887666 357888 4699999999999996
No 94
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.2e-10 Score=120.31 Aligned_cols=115 Identities=23% Similarity=0.416 Sum_probs=87.9
Q ss_pred CEEE-EEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 322 RLLF-IITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 322 ~~~l-~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
++.+ +++|.+. .+++++.-.+++. +...++ .++|.++|++||++|+= .| ++++.|..++|+|+|-.
T Consensus 212 ~~~v~~~~G~~~-~~~~~~~~~~~~~--~~v~~f---~~dm~~~~~~ADLvIsR----aG---a~Ti~E~~a~g~P~Ili 278 (357)
T COG0707 212 RIQVIHQTGKND-LEELKSAYNELGV--VRVLPF---IDDMAALLAAADLVISR----AG---ALTIAELLALGVPAILV 278 (357)
T ss_pred CeEEEEEcCcch-HHHHHHHHhhcCc--EEEeeH---HhhHHHHHHhccEEEeC----Cc---ccHHHHHHHhCCCEEEe
Confidence 3555 5667665 5666665555555 888898 88999999999999962 23 23999999999999988
Q ss_pred cCcc--------chhccccCccEEEeC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 401 SYSC--------IEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 401 ~~~~--------~~e~i~~~~~G~l~~----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
..+. ....+++...|.++. +++.+++.|.++++ +++.+++|++++++..
T Consensus 279 P~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~----~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 279 PYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLS----NPEKLKAMAENAKKLG 339 (357)
T ss_pred CCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhcC
Confidence 6433 335566666777773 36799999999999 5899999999999864
No 95
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.43 E-value=8.7e-13 Score=117.44 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 011690 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (479)
Q Consensus 20 r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~ 99 (479)
.+...+..|+++ ||+|+|+++....... .....++++++++. ...............+.+.+ ..+.
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l----------~~~~ 71 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPEDD-EEEEDGVRVHRLPL--PRRPWPLRLLRFLRRLRRLL----------AARR 71 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG--SEEETTEEEEEE----S-SSSGGGHCCHHHHHHHHC----------HHCT
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCccc-ccccCCceEEeccC--CccchhhhhHHHHHHHHHHH----------hhhc
Confidence 445567788886 9999999987764432 23467899999982 21111111112222222222 1134
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+||+++ .....++.++++..++|+|+++|+..... . .....++++++ ++...+.||.++++|
T Consensus 72 ~~~Dvv~~~~---~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-----~-~~~~~~~~~~~-----~~~~~~~ad~vi~~S 137 (160)
T PF13579_consen 72 ERPDVVHAHS---PTAGLVAALARRRRGIPLVVTVHGTLFRR-----G-SRWKRRLYRWL-----ERRLLRRADRVIVVS 137 (160)
T ss_dssp ---SEEEEEH---HHHHHHHHHHHHHHT--EEEE-SS-T------------HHHHHHHHH-----HHHHHHH-SEEEESS
T ss_pred cCCeEEEecc---cchhHHHHHHHHccCCcEEEEECCCchhh-----c-cchhhHHHHHH-----HHHHHhcCCEEEECC
Confidence 7999999999 33556666777677999999999854110 0 12233344444 888889999999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCC
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQ 200 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~ 200 (479)
+.+++.+.+ +|.+ +.|||||
T Consensus 138 ~~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 138 EAMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHHH-H---GGGEEE----
T ss_pred HHHHHHHHH-hCCCCCcEEEeCcC
Confidence 999999998 6775 9999997
No 96
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.41 E-value=2.4e-10 Score=129.67 Aligned_cols=269 Identities=10% Similarity=0.054 Sum_probs=171.1
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhc-CCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhH--HHHHHHHhhcCCEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSV--LRIEKYYGKMANGCL 176 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~-~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~ad~vi 176 (479)
..-|+|-+|. +..+++..+++... +.++-+-+|....+ + .+++++-. ..++-+ -.||.|=
T Consensus 230 ~~gD~VWVHD---YHL~LlP~~LR~~~p~~~IGfFlHiPFPs---------~---Eifr~LP~r~elL~gl--L~aDlIG 292 (934)
T PLN03064 230 EEGDVVWCHD---YHLMFLPKCLKEYNSNMKVGWFLHTPFPS---------S---EIHRTLPSRSELLRSV--LAADLVG 292 (934)
T ss_pred CCCCEEEEec---chhhHHHHHHHHhCCCCcEEEEecCCCCC---------h---HHHhhCCcHHHHHHHH--hcCCeEE
Confidence 3457999999 77777777777653 55666667754211 1 11222110 011111 2588888
Q ss_pred EeCHHHHHHHHHh----hCC------------e--EEEecCC-CCCCCCCCChH-HHHHHHHhhhhcccCCCCccccccc
Q 011690 177 CVTQAMQHELAQN----WGI------------K--ATVLYDQ-PPEFFHPTSLE-EKHELFCRLNKILHQPLGVQDCVSN 236 (479)
Q Consensus 177 ~vS~~~~~~l~~~----~~~------------~--~~vi~n~-~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (479)
+.|......+.+. .|. . +.++|-| |++.|...... +-.+....+.
T Consensus 293 FqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr--------------- 357 (934)
T PLN03064 293 FHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELK--------------- 357 (934)
T ss_pred eCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHH---------------
Confidence 8888777665542 121 1 4455666 65555432110 0001011111
Q ss_pred cccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCc
Q 011690 237 AGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGK 316 (479)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (479)
.. + .++ .+|++++|+.+.||+...+.|+..+.++
T Consensus 358 ------------------~~--~-~g~-kiIlgVDRLD~~KGI~~kL~AfE~fL~~------------------------ 391 (934)
T PLN03064 358 ------------------ER--F-AGR-KVMLGVDRLDMIKGIPQKILAFEKFLEE------------------------ 391 (934)
T ss_pred ------------------HH--h-CCc-eEEEEeeccccccCHHHHHHHHHHHHHh------------------------
Confidence 01 1 133 4999999999999999999999987765
Q ss_pred ccCCCCEE--EEEE-------ecCCChHHHHHHHHH----cC-------CCcEEEecCCCCcchHHHHHHcCCEEEEccc
Q 011690 317 QYLYPRLL--FIIT-------GKGPDKESYEEKIRR----LR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHT 376 (479)
Q Consensus 317 ~~~~p~~~--l~Iv-------G~G~~~~~l~~~~~~----~~-------l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~ 376 (479)
+|+++ ++++ |+++..+.+++.+.+ .+ ..-|.+...-++.+++..+|+.||++|++
T Consensus 392 ---~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvT-- 466 (934)
T PLN03064 392 ---NPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVT-- 466 (934)
T ss_pred ---CccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeC--
Confidence 77753 4555 555555555544433 22 12266665558999999999999999998
Q ss_pred CCCCCCCcHHHHHHHhC-----CCcEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011690 377 SSSGLDLPMKVVDMFGC-----GLPVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKKLRNGT 449 (479)
Q Consensus 377 ~s~~e~~p~~llEama~-----G~PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~ 449 (479)
|..+|+.++..|||+| |.+|+ |..+|..+.+ +..++++ .|.+++|++|.+.+.. ++++++...+..
T Consensus 467 -slrDGmNLva~Eyva~~~~~~GvLIL-SEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M---~~~Er~~r~~~~ 539 (934)
T PLN03064 467 -SLRDGMNLVSYEFVACQDSKKGVLIL-SEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNM---PEEEREKRHRHN 539 (934)
T ss_pred -ccccccCchHHHHHHhhcCCCCCeEE-eCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 7778899999999999 45555 8877777766 4468888 4699999999999985 567776666666
Q ss_pred HHhhhhhch
Q 011690 450 LEMGLSARW 458 (479)
Q Consensus 450 ~~~~~~~~w 458 (479)
++.....+|
T Consensus 540 ~~~V~~~d~ 548 (934)
T PLN03064 540 FMHVTTHTA 548 (934)
T ss_pred HhhcccCCH
Confidence 665433333
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.41 E-value=3.8e-10 Score=116.67 Aligned_cols=302 Identities=12% Similarity=0.093 Sum_probs=162.8
Q ss_pred CCChhHHHHHHHHHhh---CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011690 16 GRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (479)
Q Consensus 16 g~~~r~~~~a~~La~~---~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 92 (479)
|+++|-.+=|+.++++ .||+|.+++....-. .......|++++.++ ..+..+.. ..+.+..+.+.+...+...
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e-~~l~~~~g~~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 84 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE-KTIIEKENIPYYSIS--SGKLRRYF-DLKNIKDPFLVMKGVMDAY 84 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc-cccCcccCCcEEEEe--ccCcCCCc-hHHHHHHHHHHHHHHHHHH
Confidence 4456666656666544 599999998555432 234444578888787 22111110 1122333333333322222
Q ss_pred HHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcC
Q 011690 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMA 172 (479)
Q Consensus 93 ~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 172 (479)
. ++ +..+||+|+.+. .+.. +-+.++++..|+|+++.-.+.. ... . .+.+.+.+
T Consensus 85 ~-i~-~~~kPdvvi~~G--gy~s-~p~~~aa~~~~~p~~i~e~n~~----------~g~-------~-----nr~~~~~a 137 (352)
T PRK12446 85 V-RI-RKLKPDVIFSKG--GFVS-VPVVIGGWLNRVPVLLHESDMT----------PGL-------A-----NKIALRFA 137 (352)
T ss_pred H-HH-HhcCCCEEEecC--chhh-HHHHHHHHHcCCCEEEECCCCC----------ccH-------H-----HHHHHHhh
Confidence 2 22 348999999987 2222 2334778889999887333221 011 1 34455678
Q ss_pred CEEEEeCHHHHHHHHHhhC-CeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcc
Q 011690 173 NGCLCVTQAMQHELAQNWG-IKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 251 (479)
Q Consensus 173 d~vi~vS~~~~~~l~~~~~-~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
+.+.+.=+...+ .+. .++.+.-|.....|.... +...
T Consensus 138 ~~v~~~f~~~~~----~~~~~k~~~tG~Pvr~~~~~~~---~~~~----------------------------------- 175 (352)
T PRK12446 138 SKIFVTFEEAAK----HLPKEKVIYTGSPVREEVLKGN---REKG----------------------------------- 175 (352)
T ss_pred CEEEEEccchhh----hCCCCCeEEECCcCCccccccc---chHH-----------------------------------
Confidence 887654433322 222 234444444223332111 1111
Q ss_pred ccccccccCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEE-EEEe
Q 011690 252 LAGIDVFLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITG 329 (479)
Q Consensus 252 ~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l-~IvG 329 (479)
+..+++.+++|.++++.|+... +.+.. +.+++..+. .++++ +++|
T Consensus 176 --~~~~~l~~~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~------------------------------~~~~vv~~~G 222 (352)
T PRK12446 176 --LAFLGFSRKKPVITIMGGSLGA-KKINETVREALPELL------------------------------LKYQIVHLCG 222 (352)
T ss_pred --HHhcCCCCCCcEEEEECCccch-HHHHHHHHHHHHhhc------------------------------cCcEEEEEeC
Confidence 1122455678888888888764 23322 222232221 12444 4667
Q ss_pred cCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc-----c
Q 011690 330 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-----C 404 (479)
Q Consensus 330 ~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~-----~ 404 (479)
.+. +++...+. .++...++ + .++++++|++||++|+= + | ++++.|++++|+|+|..... +
T Consensus 223 ~~~----~~~~~~~~--~~~~~~~f-~-~~~m~~~~~~adlvIsr---~-G---~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 223 KGN----LDDSLQNK--EGYRQFEY-V-HGELPDILAITDFVISR---A-G---SNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred Cch----HHHHHhhc--CCcEEecc-h-hhhHHHHHHhCCEEEEC---C-C---hhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 553 22222221 23444565 1 26899999999999962 2 2 23899999999999988542 1
Q ss_pred ----chhccccCccEEEeC----CHHHHHHHHHHHHhcCCCCHHHH
Q 011690 405 ----IEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVL 442 (479)
Q Consensus 405 ----~~e~i~~~~~G~l~~----~~~~la~~l~~l~~~~~~~~~~~ 442 (479)
..+.+.+...|..+. +++.+++.+.++++ |++.+
T Consensus 288 ~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~----~~~~~ 329 (352)
T PRK12446 288 DQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSH----NNEKY 329 (352)
T ss_pred hHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHc----CHHHH
Confidence 224555555666652 47899999999987 45554
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.40 E-value=7.1e-12 Score=113.45 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=82.7
Q ss_pred EEecCCCCChhHHHHHHHHHhh---CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHH
Q 011690 10 VVLGDLGRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLI 86 (479)
Q Consensus 10 ~~~~~~g~~~r~~~~a~~La~~---~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (479)
++.......||++..+..|+++ .||+|+|++.....+.... ........+ ................+.+.+.
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 77 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---LVKIFVKIP--YPIRKRFLRSFFFMRRLRRLIK 77 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---EEEE---TT---SSTSS--HHHHHHHHHHHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---ccceeeeee--cccccccchhHHHHHHHHHHHH
Confidence 3333444566777665555544 6999999997765433111 001111111 0111111111111122222222
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHH
Q 011690 87 QFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEK 166 (479)
Q Consensus 87 ~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 166 (479)
+ .+||+||+|.++...... ++.. ++|++.+.|+....... .....+....+...+ ++
T Consensus 78 -----------~-~~~DiVh~~~~~~~~~~~---~~~~--~~~~v~~~H~~~~~~~~-~~~~~~~~~~~~~~~-----~~ 134 (177)
T PF13439_consen 78 -----------K-EKPDIVHIHGPPAFWIAL---LACR--KVPIVYTIHGPYFERRF-LKSKLSPYSYLNFRI-----ER 134 (177)
T ss_dssp -----------H-HT-SEEECCTTHCCCHHH---HHHH--CSCEEEEE-HHH--HHT-TTTSCCCHHHHHHCT-----TH
T ss_pred -----------H-cCCCeEEecccchhHHHH---Hhcc--CCCEEEEeCCCcccccc-cccccchhhhhhhhh-----hh
Confidence 2 699999999954433222 2222 89999999987521000 011123333333333 55
Q ss_pred HHhhcCCEEEEeCHHHHHHHHHhhCCe---EEEecCC-CCCCCC
Q 011690 167 YYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQ-PPEFFH 206 (479)
Q Consensus 167 ~~~~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~-~~~~f~ 206 (479)
.+.+.+|.++|+|+.+++++.+ +|++ +.+|||| |.+.|.
T Consensus 135 ~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 135 KLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp HHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred hHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 6678899999999999999999 7865 9999999 877773
No 99
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.32 E-value=1.6e-09 Score=113.78 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=152.2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE-EecCchhhhhhhhcCCCchhHHHHHHHh---HHH--HHHHHhhcCC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRCFS---VLR--IEKYYGKMAN 173 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii-~~h~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~e~~~~~~ad 173 (479)
.+||+|+...- ++..++++..|+|+++ -.|...+...+ +........+..+. +.. -.+...+.|+
T Consensus 92 ~~p~~v~~~Gg------~v~~~aA~~~~~p~~~~~~~esn~~~~~---~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~ 162 (396)
T TIGR03492 92 KKGDLIVAVGD------IVPLLFAWLSGKPYAFVGTAKSDYYWES---GPRRSPSDEYHRLEGSLYLPWERWLMRSRRCL 162 (396)
T ss_pred hcCCEEEEECc------HHHHHHHHHcCCCceEEEeeccceeecC---CCCCccchhhhccCCCccCHHHHHHhhchhhC
Confidence 39999998871 2245667888999877 33432211000 00000001111100 000 0345667899
Q ss_pred EEEEeCHHHHHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccc
Q 011690 174 GCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 253 (479)
Q Consensus 174 ~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (479)
.+.+-.+...+.+.+. |.++.++-|.-.+....... .
T Consensus 163 ~v~~~~~~t~~~l~~~-g~k~~~vGnPv~d~l~~~~~---~--------------------------------------- 199 (396)
T TIGR03492 163 AVFVRDRLTARDLRRQ-GVRASYLGNPMMDGLEPPER---K--------------------------------------- 199 (396)
T ss_pred EEeCCCHHHHHHHHHC-CCeEEEeCcCHHhcCccccc---c---------------------------------------
Confidence 9998888888877654 88888887762222211110 0
Q ss_pred ccccccCCCCCeEEEEEecCC--CCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEe-c
Q 011690 254 GIDVFLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-K 330 (479)
Q Consensus 254 ~~~~~~~~~~~~~i~~~g~~~--~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG-~ 330 (479)
++.++.+.+++..|+-. ..++++.+++++..+.+ .+++.+++.= .
T Consensus 200 ----~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~----------------------------~~~~~~v~~~~~ 247 (396)
T TIGR03492 200 ----PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD----------------------------SQPFVFLAAIVP 247 (396)
T ss_pred ----ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh----------------------------CCCeEEEEEeCC
Confidence 12344556777777543 34677899999988853 2567775433 4
Q ss_pred CCChHHHHHHHHHcCCC---------------cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC
Q 011690 331 GPDKESYEEKIRRLRLK---------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL 395 (479)
Q Consensus 331 G~~~~~l~~~~~~~~l~---------------~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~ 395 (479)
+...+.+++...+.++. ++.+... ..++.++|++||++|+- +| .+..|++++|+
T Consensus 248 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~ADlvI~r----SG----t~T~E~a~lg~ 316 (396)
T TIGR03492 248 SLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEILHWADLGIAM----AG----TATEQAVGLGK 316 (396)
T ss_pred CCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHHHHhCCEEEEC----cC----HHHHHHHHhCC
Confidence 56667777777665542 2566555 67899999999999984 33 35599999999
Q ss_pred cEEEecCccch---hcccc-----CccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011690 396 PVCAVSYSCIE---ELVKV-----DKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGT 449 (479)
Q Consensus 396 PVIas~~~~~~---e~i~~-----~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~ 449 (479)
|+|.....+.. .+.+. +....+. .+++.+++.+.++++ |++.+++|.+++
T Consensus 317 P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~----d~~~~~~~~~~~ 375 (396)
T TIGR03492 317 PVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLA----DPELLERCRRNG 375 (396)
T ss_pred CEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHc----CHHHHHHHHHHH
Confidence 99999743331 22222 3333333 458999999999998 588888887433
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.28 E-value=7.2e-10 Score=118.88 Aligned_cols=265 Identities=18% Similarity=0.194 Sum_probs=152.1
Q ss_pred HHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe-EEEecCC-CCCCCCCCChH-HHH-HHHHhhhhcccCCCCccccccccc
Q 011690 163 RIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLE-EKH-ELFCRLNKILHQPLGVQDCVSNAG 238 (479)
Q Consensus 163 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~~~~f~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 238 (479)
.+|+...+.||...+||+-...+-....+.+ -.|+||| +.+.|.....- ..+ ....++..
T Consensus 213 ~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~---------------- 276 (633)
T PF05693_consen 213 SIERAAAHYADVFTTVSEITAKEAEHLLKRKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHE---------------- 276 (633)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHHSS--SEE----B-GGGTSSTTHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCCEEcCCCccccccccchHHHHHHHHHHHHHHH----------------
Confidence 3488888999999999999998877666665 6788999 66666554321 111 11222211
Q ss_pred cCCcccccchhcc-ccccccccCCCCCeEEEEEecCC-CCCCHHHHHHHHHHhHHHHhhhhccC-------------CCc
Q 011690 239 MEGQKADETIFTS-LAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNED-------------DST 303 (479)
Q Consensus 239 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~~-~~K~~~~lieA~~~l~~~~~~~~~~~-------------~~~ 303 (479)
|.. ...+.+.+.+++.+++..+||.+ ..||+|.+|||+..|...+.+. +.+ .+-
T Consensus 277 ----------fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~-~~~~tVVaFii~pa~~~~~ 345 (633)
T PF05693_consen 277 ----------FVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQA-GSDKTVVAFIIVPAKTNSF 345 (633)
T ss_dssp ----------HHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHT-T-S-EEEEEEE---SEEEE
T ss_pred ----------HHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhc-CCCCeEEEEEEecCccCCc
Confidence 100 01122334456677888999998 5899999999999998764332 000 011
Q ss_pred hhh-----hhHhhhccC-------------------------------------------cccCCCCEEEEEEecCCChH
Q 011690 304 NEE-----VFLKEISDG-------------------------------------------KQYLYPRLLFIITGKGPDKE 335 (479)
Q Consensus 304 ~~~-----~~~~~~~~~-------------------------------------------~~~~~p~~~l~IvG~G~~~~ 335 (479)
|-| .+.+++++. +....|.+.=.-.- ....+
T Consensus 346 ~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~-d~~~D 424 (633)
T PF05693_consen 346 NVESLKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLH-DDSND 424 (633)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEET-TTTT-
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCC-CCccC
Confidence 111 112222111 11112222111111 23456
Q ss_pred HHHHHHHHcCC-C------cEEEecCCCCcc------hHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 SYEEKIRRLRL-K------RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 ~l~~~~~~~~l-~------~V~f~G~~~~~~------~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+-..++++++ + +|+|..-+++.. ++.+++..+|++|+| |..|.+|.+-+|+.++|+|.|.|+.
T Consensus 425 pILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFP---SYYEPWGYTPlE~~a~gVPsITTnL 501 (633)
T PF05693_consen 425 PILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFP---SYYEPWGYTPLECTAFGVPSITTNL 501 (633)
T ss_dssp HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE-----SSBSS-HHHHHHHHTT--EEEETT
T ss_pred HHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeec---cccccccCChHHHhhcCCceeeccc
Confidence 77778888876 2 477877666544 789999999999999 8889999999999999999999999
Q ss_pred ccchhcccc-----CccEEEe-----CC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHH
Q 011690 403 SCIEELVKV-----DKNGLLF-----SS----SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 461 (479)
Q Consensus 403 ~~~~e~i~~-----~~~G~l~-----~~----~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 461 (479)
+|+...++. ...|+.+ .+ +++|++.|...... +...+..+|+++.+......|..-
T Consensus 502 sGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~---~~rqri~~Rn~ae~LS~~~dW~~~ 571 (633)
T PF05693_consen 502 SGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQL---SRRQRIIQRNRAERLSDLADWKNF 571 (633)
T ss_dssp BHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT-----HHHHHHHHHHHHHHGGGGBHHHH
T ss_pred hhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 887644442 3457776 23 44566666666664 678888899999887778888653
No 101
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.22 E-value=1.4e-08 Score=111.58 Aligned_cols=182 Identities=11% Similarity=0.022 Sum_probs=129.2
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC-----
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD----- 333 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~----- 333 (479)
+.++.+ ++++++|+..+|+.+.++.++..+.+-+ . +...++.|++.|+|.-
T Consensus 385 ~dpd~~-~ig~v~Rl~~yKr~dLil~~i~~l~~i~-------------------~----~~~~pvq~V~~Gka~p~d~~g 440 (601)
T TIGR02094 385 LDPDVL-TIGFARRFATYKRADLIFRDLERLARIL-------------------N----NPERPVQIVFAGKAHPADGEG 440 (601)
T ss_pred cCCCCc-EEEEEEcchhhhhHHHHHHHHHHHHHHh-------------------h----CCCCCeEEEEEEecCcccchH
Confidence 345665 8999999999999999999988886420 0 0013599999999852
Q ss_pred ---hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEE-cccCCC-CCCCcHHHHHHHhCCCcEEEecCccchh
Q 011690 334 ---KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVC-LHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEE 407 (479)
Q Consensus 334 ---~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~-p~~~s~-~e~~p~~llEama~G~PVIas~~~~~~e 407 (479)
...+.+.+++... .+|.|+-. .+.+--..+++.||+++. | +. .|..|+.=+=||..|.+.+++--|...|
T Consensus 441 k~~i~~i~~la~~~~~~~kv~f~~~-Yd~~lA~~i~aG~Dv~L~~P---sr~~EacGtsqMka~~nGgL~~sv~DG~~~E 516 (601)
T TIGR02094 441 KEIIQRIVEFSKRPEFRGRIVFLEN-YDINLARYLVSGVDVWLNNP---RRPLEASGTSGMKAAMNGVLNLSILDGWWGE 516 (601)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcC-CCHHHHHHHhhhheeEEeCC---CCCcCCchHHHHHHHHcCCceeecccCcccc
Confidence 3334444443224 57888765 567777889999999998 6 54 6778889999999999999998888878
Q ss_pred ccccCccEEEeC--------------CHHHHHHHHHHHH-hcCCCC-----HHHHHHHHHHHHHh-hhhhchHHHHHHHH
Q 011690 408 LVKVDKNGLLFS--------------SSSELADQLLMLF-KGFPDD-----SDVLKKLRNGTLEM-GLSARWATEWEEHA 466 (479)
Q Consensus 408 ~i~~~~~G~l~~--------------~~~~la~~l~~l~-~~~~~~-----~~~~~~~~~~~~~~-~~~~~w~~~~~~~~ 466 (479)
.. ++.|||.+. ++++|.++|.+.+ ..+-++ +..+.++.+++-.. ...++|+.+-++..
T Consensus 517 ~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~ 595 (601)
T TIGR02094 517 GY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYV 595 (601)
T ss_pred cC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 76 678999996 3678888887655 322112 45577777777662 22577776666555
Q ss_pred HHH
Q 011690 467 KPL 469 (479)
Q Consensus 467 ~~~ 469 (479)
..+
T Consensus 596 ~~y 598 (601)
T TIGR02094 596 DKF 598 (601)
T ss_pred HHh
Confidence 443
No 102
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.21 E-value=1.6e-08 Score=105.12 Aligned_cols=239 Identities=16% Similarity=0.131 Sum_probs=140.2
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+|++++ .....+.+.+++...++|++ ..|.-..+ .+ ...-.. .+...+.|+..++.+
T Consensus 92 ~~Pd~vlv~G--D~~~~la~alaA~~~~IPv~-HveaG~rs-----~~---~~eE~~--------r~~i~~la~l~f~~t 152 (365)
T TIGR03568 92 LKPDLVVVLG--DRFEMLAAAIAAALLNIPIA-HIHGGEVT-----EG---AIDESI--------RHAITKLSHLHFVAT 152 (365)
T ss_pred hCCCEEEEeC--CchHHHHHHHHHHHhCCcEE-EEECCccC-----CC---CchHHH--------HHHHHHHHhhccCCC
Confidence 7999999998 34455666678889999976 23322100 00 011111 223456688888888
Q ss_pred HHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+..++.+.+. |.+ +.++-|...+.+.......+..+..+
T Consensus 153 ~~~~~~L~~e-g~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~------------------------------------- 194 (365)
T TIGR03568 153 EEYRQRVIQM-GEDPDRVFNVGSPGLDNILSLDLLSKEELEEK------------------------------------- 194 (365)
T ss_pred HHHHHHHHHc-CCCCCcEEEECCcHHHHHHhhhccCHHHHHHH-------------------------------------
Confidence 8888877765 653 55555541111111000011222222
Q ss_pred cccCCCCCeEEEEEecCC--CCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh
Q 011690 257 VFLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 334 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~--~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~ 334 (479)
+++.++++.+++..-+-+ .....+.+.+.++.+.+. ..++.++.-..++..
T Consensus 195 lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~---------------------------~~~~~vi~P~~~p~~ 247 (365)
T TIGR03568 195 LGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL---------------------------NKNYIFTYPNADAGS 247 (365)
T ss_pred hCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh---------------------------ccCCEEEEeCCCCCc
Confidence 233333344444443322 222233344444444332 223433332233544
Q ss_pred HHHHHHHHHcC--CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccC
Q 011690 335 ESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 412 (479)
Q Consensus 335 ~~l~~~~~~~~--l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~ 412 (479)
+.+.+.++++. .++|.+.+. ++..++..+++.|+++|.- |++ -+-||.++|+|+|+. +.-+|.++.+
T Consensus 248 ~~i~~~i~~~~~~~~~v~l~~~-l~~~~~l~Ll~~a~~vitd---SSg-----gi~EA~~lg~Pvv~l--~~R~e~~~~g 316 (365)
T TIGR03568 248 RIINEAIEEYVNEHPNFRLFKS-LGQERYLSLLKNADAVIGN---SSS-----GIIEAPSFGVPTINI--GTRQKGRLRA 316 (365)
T ss_pred hHHHHHHHHHhcCCCCEEEECC-CChHHHHHHHHhCCEEEEc---Chh-----HHHhhhhcCCCEEee--cCCchhhhhc
Confidence 44454445432 468999998 9999999999999999953 434 348999999999954 5688888888
Q ss_pred ccEEEe-CCHHHHHHHHHHHHh
Q 011690 413 KNGLLF-SSSSELADQLLMLFK 433 (479)
Q Consensus 413 ~~G~l~-~~~~~la~~l~~l~~ 433 (479)
.+.+++ .+++++.+++.++.+
T Consensus 317 ~nvl~vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 317 DSVIDVDPDKEEIVKAIEKLLD 338 (365)
T ss_pred CeEEEeCCCHHHHHHHHHHHhC
Confidence 888877 579999999998544
No 103
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.18 E-value=4.2e-09 Score=98.88 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=110.4
Q ss_pred ceEEEEEecCC-CCChhHHHHHHHHHhh---CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHH
Q 011690 5 GRACVVVLGDL-GRSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (479)
Q Consensus 5 ~~~~i~~~~~~-g~~~r~~~~a~~La~~---~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 80 (479)
++++|+-.-.+ ...||.+.+++.|+.+ .||+|+|.|....... ......|++++.+| .+..+. . ..
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~---~~~~g~--~----~s 71 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIP---APKNGS--A----ES 71 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeC---CCCCCc--h----HH
Confidence 55776664333 3477888888888766 5999999998765433 34557899999998 222211 1 11
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhc--CCcEEEEecCchhhhhhhhcCCCchhHHHHHH
Q 011690 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRC 158 (479)
Q Consensus 81 l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~--~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
+...+..+...++.......+.|+++++... . ..++..+.+++. |.|+++..|+..|.. .+++...+.+.
T Consensus 72 i~yd~~sl~~al~~~~~~~~~~~ii~ilg~~-~-g~~~~~~~r~~~~~g~~v~vN~DGlEWkR-----~KW~~~~k~~l- 143 (185)
T PF09314_consen 72 IIYDFLSLLHALRFIKQDKIKYDIILILGYG-I-GPFFLPFLRKLRKKGGKVVVNMDGLEWKR-----AKWGRPAKKYL- 143 (185)
T ss_pred HHHHHHHHHHHHHHHhhccccCCEEEEEcCC-c-cHHHHHHHHhhhhcCCcEEECCCcchhhh-----hhcCHHHHHHH-
Confidence 1111111111121111112368899998832 1 233444555543 569999998876432 22333333222
Q ss_pred HhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhC-CeEEEecCC
Q 011690 159 FSVLRIEKYYGKMANGCLCVTQAMQHELAQNWG-IKATVLYDQ 200 (479)
Q Consensus 159 ~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~-~~~~vi~n~ 200 (479)
...|+...+.||.+|+.|+.+++++.+.|+ .+.++|++|
T Consensus 144 ---k~~E~~avk~ad~lIaDs~~I~~y~~~~y~~~~s~~IaYG 183 (185)
T PF09314_consen 144 ---KFSEKLAVKYADRLIADSKGIQDYIKERYGRKKSTFIAYG 183 (185)
T ss_pred ---HHHHHHHHHhCCEEEEcCHHHHHHHHHHcCCCCcEEecCC
Confidence 233999999999999999999999999999 779999887
No 104
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.13 E-value=3.1e-10 Score=94.05 Aligned_cols=89 Identities=16% Similarity=0.308 Sum_probs=77.1
Q ss_pred EEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 011690 371 GVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTL 450 (479)
Q Consensus 371 ~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~ 450 (479)
++.| +...+++++++|+||||+|||+++.++..+++.++..++.++|++++.+++..+++ +++.+++++++++
T Consensus 2 ~Ln~---~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~----~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 2 NLNP---SRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLE----NPEERRRIAKNAR 74 (92)
T ss_pred EeeC---CCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHC----CHHHHHHHHHHHH
Confidence 4555 33466888999999999999999999999999999999999999999999999999 6999999999998
Q ss_pred Hhh-hhhchHHHHHHHH
Q 011690 451 EMG-LSARWATEWEEHA 466 (479)
Q Consensus 451 ~~~-~~~~w~~~~~~~~ 466 (479)
+.. ..++|+..|++.+
T Consensus 75 ~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 764 4788888777654
No 105
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1.8e-07 Score=96.91 Aligned_cols=319 Identities=18% Similarity=0.188 Sum_probs=191.2
Q ss_pred cCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCcc-cccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011690 13 GDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHA-AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM 90 (479)
Q Consensus 13 ~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~~~~-~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 90 (479)
..+|-.--..-.+..|.++ .++.+.|-|..++.... ...-.+.+....+|.. .+ ....+++..
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D---------~~---~~v~rFl~~--- 121 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLD---------LP---IAVRRFLRK--- 121 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcC---------ch---HHHHHHHHh---
Confidence 3354444445555566555 46777777755543221 1111234777777711 11 222344544
Q ss_pred HHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEE-ecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHh
Q 011690 91 LLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYG 169 (479)
Q Consensus 91 ~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 169 (479)
.+||+.++...-.++.++ .-.+..++|+++- -.-.. +..+.++..+.+ .+.+.
T Consensus 122 ---------~~P~l~Ii~EtElWPnli---~e~~~~~~p~~LvNaRLS~---------rS~~~y~k~~~~-----~~~~~ 175 (419)
T COG1519 122 ---------WRPKLLIIMETELWPNLI---NELKRRGIPLVLVNARLSD---------RSFARYAKLKFL-----ARLLF 175 (419)
T ss_pred ---------cCCCEEEEEeccccHHHH---HHHHHcCCCEEEEeeeech---------hhhHHHHHHHHH-----HHHHH
Confidence 799986665533333332 2345678997762 11110 001111112222 55566
Q ss_pred hcCCEEEEeCHHHHHHHHHhhCCe-EEEecCCCCCCCCCCC---hHHHHHHHHhhhhcccCCCCccccccccccCCcccc
Q 011690 170 KMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTS---LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKAD 245 (479)
Q Consensus 170 ~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (479)
+..|.|++.|+...+.+.+. |.+ +.+.-|- .++...+ ......+..+
T Consensus 176 ~~i~li~aQse~D~~Rf~~L-Ga~~v~v~GNl--Kfd~~~~~~~~~~~~~~r~~-------------------------- 226 (419)
T COG1519 176 KNIDLILAQSEEDAQRFRSL-GAKPVVVTGNL--KFDIEPPPQLAAELAALRRQ-------------------------- 226 (419)
T ss_pred HhcceeeecCHHHHHHHHhc-CCcceEEecce--eecCCCChhhHHHHHHHHHh--------------------------
Confidence 78999999999999998777 777 5555553 1111111 1111222222
Q ss_pred cchhccccccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEE
Q 011690 246 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 325 (479)
+...+|.++..++ + +..-+.++++.+.++++ +||..+
T Consensus 227 -------------l~~~r~v~iaaST--H-~GEeei~l~~~~~l~~~---------------------------~~~~ll 263 (419)
T COG1519 227 -------------LGGHRPVWVAAST--H-EGEEEIILDAHQALKKQ---------------------------FPNLLL 263 (419)
T ss_pred -------------cCCCCceEEEecC--C-CchHHHHHHHHHHHHhh---------------------------CCCceE
Confidence 2222664444433 2 23446789999999987 999999
Q ss_pred EEEecCCCh-HHHHHHHHHcCCCcEEEecC-CC----------CcchHHHHHHcCCEEEEcc-c-CCCCCCCcHHHHHHH
Q 011690 326 IITGKGPDK-ESYEEKIRRLRLKRVAFRTM-WL----------SAEDYPLLLGSADLGVCLH-T-SSSGLDLPMKVVDMF 391 (479)
Q Consensus 326 ~IvG~G~~~-~~l~~~~~~~~l~~V~f~G~-~~----------~~~~~~~~l~~adi~v~p~-~-~s~~e~~p~~llEam 391 (479)
++|=.-|++ ..+++.+++.|++-..+-.. +. +--++..+|+.||+.++-- . ...|. -++|+.
T Consensus 264 IlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGH----N~LEpa 339 (419)
T COG1519 264 ILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGH----NPLEPA 339 (419)
T ss_pred EEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCC----ChhhHH
Confidence 999977655 56777888877643322211 00 1448999999999988631 0 11333 569999
Q ss_pred hCCCcEEEec----CccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 392 GCGLPVCAVS----YSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 392 a~G~PVIas~----~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
++|+|||.-. ...+.+-+.+...|+.+++.+.+++.+..++. |++.++++++++.+.
T Consensus 340 ~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~----~~~~r~~~~~~~~~~ 400 (419)
T COG1519 340 AFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLA----DEDKREAYGRAGLEF 400 (419)
T ss_pred HcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcC----CHHHHHHHHHHHHHH
Confidence 9999999874 44455566677789999888888888888877 689999999888874
No 106
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.11 E-value=3e-09 Score=112.77 Aligned_cols=123 Identities=12% Similarity=0.183 Sum_probs=99.6
Q ss_pred HHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC-hHHHHHHHHHcCCCc-EEEecCCCC
Q 011690 280 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRLKR-VAFRTMWLS 357 (479)
Q Consensus 280 ~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~-~~~l~~~~~~~~l~~-V~f~G~~~~ 357 (479)
...|+++..+.++ .|+++|.| |.|.. .+.++++ .++ +| +.|.| ..
T Consensus 291 s~~I~~i~~Lv~~---------------------------lPd~~f~I-ga~te~s~kL~~L-~~y--~nvvly~~--~~ 337 (438)
T TIGR02919 291 SDQIEHLEEIVQA---------------------------LPDYHFHI-AALTEMSSKLMSL-DKY--DNVKLYPN--IT 337 (438)
T ss_pred HHHHHHHHHHHHh---------------------------CCCcEEEE-EecCcccHHHHHH-Hhc--CCcEEECC--cC
Confidence 8899999999886 99999999 87755 6777777 555 55 55555 45
Q ss_pred cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc-cchhccccCccEEEe--CCHHHHHHHHHHHHhc
Q 011690 358 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNGLLF--SSSSELADQLLMLFKG 434 (479)
Q Consensus 358 ~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~-~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~ 434 (479)
.+++.++|..||+++.. +.++++++++.||++.|+||++.+.. +..+++.+ |.++ +++++|+++|.+++.+
T Consensus 338 ~~~l~~ly~~~dlyLdi---n~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 338 TQKIQELYQTCDIYLDI---NHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND 411 (438)
T ss_pred hHHHHHHHHhccEEEEc---cccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC
Confidence 66899999999999987 78889999999999999999999854 34566644 7777 6799999999999994
Q ss_pred CCCCHHHHHHH
Q 011690 435 FPDDSDVLKKL 445 (479)
Q Consensus 435 ~~~~~~~~~~~ 445 (479)
++.++..
T Consensus 412 ----~~~~~~~ 418 (438)
T TIGR02919 412 ----PNQFREL 418 (438)
T ss_pred ----HHHHHHH
Confidence 6554443
No 107
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.01 E-value=6.3e-08 Score=97.70 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=82.2
Q ss_pred CCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHH
Q 011690 262 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 341 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~ 341 (479)
+.+.++++.|..... .++++++. .|+..++++|.+.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~-------------------------------~~~~~~~v~g~~~--------- 226 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKA-------------------------------LPDYQFIVFGPNA--------- 226 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHh-------------------------------CCCCeEEEEcCCc---------
Confidence 345688888887654 55666554 5678888887652
Q ss_pred HHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc------hhccccCccE
Q 011690 342 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI------EELVKVDKNG 415 (479)
Q Consensus 342 ~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~------~e~i~~~~~G 415 (479)
.+...+||.+.+. +.+++.+++++||++|.- .| . +++.|++++|+|++.....+. .+.++....|
T Consensus 227 ~~~~~~ni~~~~~--~~~~~~~~m~~ad~vIs~----~G--~-~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~ 297 (318)
T PF13528_consen 227 ADPRPGNIHVRPF--STPDFAELMAAADLVISK----GG--Y-TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLG 297 (318)
T ss_pred ccccCCCEEEeec--ChHHHHHHHHhCCEEEEC----CC--H-HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCe
Confidence 1111478999886 348999999999999963 33 2 269999999999999986542 3455555667
Q ss_pred EEeC----CHHHHHHHHHHH
Q 011690 416 LLFS----SSSELADQLLML 431 (479)
Q Consensus 416 ~l~~----~~~~la~~l~~l 431 (479)
...+ +++.|++.|.++
T Consensus 298 ~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 298 IVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEcccccCCHHHHHHHHhcC
Confidence 6653 477888877653
No 108
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.99 E-value=1.6e-08 Score=89.56 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011690 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (479)
Q Consensus 18 ~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 97 (479)
++-+..++..|.++ |++|+|++..+.. .......++++++++ . +.+....... +..+ ++++.
T Consensus 10 ~~~~~~~~~~L~~~-g~~V~ii~~~~~~--~~~~~~~~i~~~~~~--~-~~k~~~~~~~-~~~l-----------~k~ik 71 (139)
T PF13477_consen 10 STFIYNLAKELKKR-GYDVHIITPRNDY--EKYEIIEGIKVIRLP--S-PRKSPLNYIK-YFRL-----------RKIIK 71 (139)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEcCCCc--hhhhHhCCeEEEEec--C-CCCccHHHHH-HHHH-----------HHHhc
Confidence 35677778888886 9999999986543 233446789999997 2 1211111111 1122 22222
Q ss_pred hcCCCcEEEEeCCCCcchHHHHHHHHHhcC-CcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEE
Q 011690 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCL 176 (479)
Q Consensus 98 ~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~-~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 176 (479)
+ .+||+||+|.+. +....+.+++++.+ +|+|++.|+... .. .....++.+++ ++.+.++||.++
T Consensus 72 ~-~~~DvIh~h~~~--~~~~~~~l~~~~~~~~~~i~~~hg~~~--~~-----~~~~~~~~~~~-----~~~~~k~~~~ii 136 (139)
T PF13477_consen 72 K-EKPDVIHCHTPS--PYGLFAMLAKKLLKNKKVIYTVHGSDF--YN-----SSKKKKLKKFI-----IKFAFKRADKII 136 (139)
T ss_pred c-CCCCEEEEecCC--hHHHHHHHHHHHcCCCCEEEEecCCee--ec-----CCchHHHHHHH-----HHHHHHhCCEEE
Confidence 2 789999999952 22455667777777 999999998642 11 11122244555 778889999999
Q ss_pred EeC
Q 011690 177 CVT 179 (479)
Q Consensus 177 ~vS 179 (479)
+.|
T Consensus 137 ~~~ 139 (139)
T PF13477_consen 137 VQS 139 (139)
T ss_pred EcC
Confidence 875
No 109
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.94 E-value=3.4e-07 Score=95.49 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=58.2
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccCccEEEeC---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS--- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~~~G~l~~--- 419 (479)
+||.+.+. ++. ..++..||++|. ..| ..++.||+++|+|+|.....+ ..+.+.....|....
T Consensus 288 ~~v~~~~~-~p~---~~ll~~~d~~I~----hgG---~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 288 DNVRVVDF-VPH---DWLLPRCAAVVH----HGG---AGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CceEEeCC-CCH---HHHhhhhheeee----cCC---chhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 68999995 764 457889999995 222 248999999999999997554 345566666777762
Q ss_pred -CHHHHHHHHHHHHh
Q 011690 420 -SSSELADQLLMLFK 433 (479)
Q Consensus 420 -~~~~la~~l~~l~~ 433 (479)
+++++++++.++++
T Consensus 357 ~~~~~l~~al~~~l~ 371 (401)
T cd03784 357 LTAERLAAALRRLLD 371 (401)
T ss_pred CCHHHHHHHHHHHhC
Confidence 57899999999988
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=6.9e-07 Score=91.64 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=179.4
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEE-EeecCCCCCCCCCchhHHHHHHHHHHHHH
Q 011690 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH-TMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (479)
Q Consensus 10 ~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (479)
++.|+.++.---.....+|-.+.+ +|..++.++.... ..|++.. .+. .....++....+.+..+++.++++
T Consensus 6 i~AGE~SGDllGa~LikaLk~~~~-~~efvGvgG~~m~-----aeG~~sl~~~~--elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 6 LSAGEASGDLLGAGLIKALKARYP-DVEFVGVGGEKME-----AEGLESLFDME--ELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred EEecccchhhHHHHHHHHHHhhCC-CeEEEEeccHHHH-----hccCccccCHH--HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444665443333444556655534 8999987764322 1221110 011 011111222223333344444442
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHH
Q 011690 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYY 168 (479)
Q Consensus 89 ~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 168 (479)
...+. .++||++++-..|.+...+.-++-+...++|+|.-+- .+.+. ++-.| -..+
T Consensus 78 ~~~i~-----~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~---PsVWA---------Wr~~R-------a~~i 133 (381)
T COG0763 78 VRYIL-----ANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS---PSVWA---------WRPKR-------AVKI 133 (381)
T ss_pred HHHHH-----hcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC---cceee---------echhh-------HHHH
Confidence 21111 2899998888777776655544433333577664221 12211 11111 1234
Q ss_pred hhcCCEEEEeCHHHHHHHHHhhCCeEEEecCC--CCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCccccc
Q 011690 169 GKMANGCLCVTQAMQHELAQNWGIKATVLYDQ--PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADE 246 (479)
Q Consensus 169 ~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
.+.+|+++++=+...+++.+. |.+++.|-+. +...+.+.. ...+.+
T Consensus 134 ~~~~D~lLailPFE~~~y~k~-g~~~~yVGHpl~d~i~~~~~r----~~ar~~--------------------------- 181 (381)
T COG0763 134 AKYVDHLLAILPFEPAFYDKF-GLPCTYVGHPLADEIPLLPDR----EAAREK--------------------------- 181 (381)
T ss_pred HHHhhHeeeecCCCHHHHHhc-CCCeEEeCChhhhhccccccH----HHHHHH---------------------------
Confidence 467899999999999877665 8887777665 322233332 222222
Q ss_pred chhccccccccccCCCCCeEEEEEecCC--CCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEE
Q 011690 247 TIFTSLAGIDVFLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 324 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 324 (479)
+++..+++.+.+..|+=. -.+....+.+|+..+.++ +|+++
T Consensus 182 ----------l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~---------------------------~~~~~ 224 (381)
T COG0763 182 ----------LGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKAR---------------------------YPDLK 224 (381)
T ss_pred ----------hCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhh---------------------------CCCce
Confidence 345566676777776422 245667788888888876 99999
Q ss_pred EEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe-cCc
Q 011690 325 FIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYS 403 (479)
Q Consensus 325 l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas-~~~ 403 (479)
+++-=-.+..+.++....+........ ++...+-.+.+.+||+.+.. + |++.+|+|.+|+|.|.+ ...
T Consensus 225 ~vlp~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~aD~al~a----S----GT~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 225 FVLPLVNAKYRRIIEEALKWEVAGLSL---ILIDGEKRKAFAAADAALAA----S----GTATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred EEEecCcHHHHHHHHHHhhccccCceE---EecCchHHHHHHHhhHHHHh----c----cHHHHHHHHhCCCEEEEEecc
Confidence 999776554344333333221101222 13356788899999999875 3 34999999999997665 344
Q ss_pred cchhcc-----ccCc-------cE-EEe-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 404 CIEELV-----KVDK-------NG-LLF-----S--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 404 ~~~e~i-----~~~~-------~G-~l~-----~--~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
.+.-.+ +-.. .| .++ + .++.+++++..++.+ .+.++++.+...++
T Consensus 294 ~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~----~~~~~~~~~~~~~l 358 (381)
T COG0763 294 PITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN----GDRREALKEKFREL 358 (381)
T ss_pred HHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC----hHhHHHHHHHHHHH
Confidence 432211 0000 01 111 1 378999999999994 55556665555554
No 111
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.85 E-value=2.9e-06 Score=88.56 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=70.4
Q ss_pred EEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc
Q 011690 324 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 403 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~ 403 (479)
.++.+|.+...+.++ ++ .++|.+.+ |++.. +++..||++|+- .|. .++.||+++|+|+|.....
T Consensus 257 ~i~~~g~~~~~~~~~----~~-~~~v~~~~-~~p~~---~ll~~~~~~I~h----gG~---~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 257 VVLSVGRGVDPADLG----EL-PPNVEVRQ-WVPQL---EILKKADAFITH----GGM---NSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred EEEEECCCCChhHhc----cC-CCCeEEeC-CCCHH---HHHhhCCEEEEC----CCc---hHHHHHHHhCCCEEecCCc
Confidence 344667665433322 11 26898888 48764 678999999963 231 2799999999999997644
Q ss_pred c----chhccccCccEEEeC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011690 404 C----IEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGT 449 (479)
Q Consensus 404 ~----~~e~i~~~~~G~l~~----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~ 449 (479)
+ +.+.+.....|.... +++++++++.++++ +++.++.++.-+
T Consensus 321 ~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~----~~~~~~~~~~l~ 370 (392)
T TIGR01426 321 ADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLS----DPRYAERLRKMR 370 (392)
T ss_pred ccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 3 334455656777662 37899999999998 465544444333
No 112
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.82 E-value=6.8e-07 Score=89.58 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=74.7
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEE-EEEecC-CChHHHHHHH
Q 011690 264 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKG-PDKESYEEKI 341 (479)
Q Consensus 264 ~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l-~IvG~G-~~~~~l~~~~ 341 (479)
+.++++.|...+.+....+++++..+. +++.+ +|+|.+ +..+++++.+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~------------------------------~~~~i~vv~G~~~~~~~~l~~~~ 220 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ------------------------------INISITLVTGSSNPNLDELKKFA 220 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc------------------------------cCceEEEEECCCCcCHHHHHHHH
Confidence 457888888888665667777776532 23332 478876 6677888877
Q ss_pred HHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 342 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 342 ~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
+.. ++|.+.+. .+++.+++++||++|++ . |.++.|++++|+|+|+......
T Consensus 221 ~~~--~~i~~~~~---~~~m~~lm~~aDl~Is~----~----G~T~~E~~a~g~P~i~i~~~~n 271 (279)
T TIGR03590 221 KEY--PNIILFID---VENMAELMNEADLAIGA----A----GSTSWERCCLGLPSLAICLAEN 271 (279)
T ss_pred HhC--CCEEEEeC---HHHHHHHHHHCCEEEEC----C----chHHHHHHHcCCCEEEEEeccc
Confidence 653 57999998 89999999999999974 2 2489999999999999876543
No 113
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.78 E-value=2.3e-06 Score=89.02 Aligned_cols=311 Identities=19% Similarity=0.220 Sum_probs=167.3
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEE-EeecCCCCCCCCCchhHHHHHHHHHHHHH
Q 011690 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH-TMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (479)
Q Consensus 10 ~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (479)
++.|+.++.--....+..|.++ .=++.+++.++.... ..|++.. .+. .....++....+.+..+++.+.++
T Consensus 3 i~AGE~SGD~~ga~Li~~Lk~~-~p~~~~~GvGG~~M~-----~~G~~~l~d~~--~lsvmG~~Evl~~l~~~~~~~~~~ 74 (373)
T PF02684_consen 3 ISAGEASGDLHGARLIRALKAR-DPDIEFYGVGGPRMQ-----AAGVESLFDME--ELSVMGFVEVLKKLPKLKRLFRKL 74 (373)
T ss_pred EEeeCccHHHHHHHHHHHHHhh-CCCcEEEEEechHHH-----hCCCceecchH--HhhhccHHHHHHHHHHHHHHHHHH
Confidence 3445554333333445555554 557888887765332 1232211 111 111111222222333333333332
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCc--EEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHH
Q 011690 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA--FIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEK 166 (479)
Q Consensus 89 ~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~--~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 166 (479)
...+ +..+||+++.-+-|.+..-+ ++.+++ .+.+ +|.-+- ...+. ++-.| -+
T Consensus 75 ~~~~-----~~~~pd~vIlID~pgFNlrl-ak~lk~-~~~~~~viyYI~---PqvWA---------Wr~~R-------~~ 128 (373)
T PF02684_consen 75 VERI-----KEEKPDVVILIDYPGFNLRL-AKKLKK-RGIPIKVIYYIS---PQVWA---------WRPGR-------AK 128 (373)
T ss_pred HHHH-----HHcCCCEEEEeCCCCccHHH-HHHHHH-hCCCceEEEEEC---Cceee---------eCccH-------HH
Confidence 2111 23899988777766555433 333332 3444 544221 11111 01011 12
Q ss_pred HHhhcCCEEEEeCHHHHHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCccccc
Q 011690 167 YYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADE 246 (479)
Q Consensus 167 ~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
.+.+.+|.++|+=+...+++.+. |.+++.+-|.-.+...+... +....
T Consensus 129 ~i~~~~D~ll~ifPFE~~~y~~~-g~~~~~VGHPl~d~~~~~~~--~~~~~----------------------------- 176 (373)
T PF02684_consen 129 KIKKYVDHLLVIFPFEPEFYKKH-GVPVTYVGHPLLDEVKPEPD--RAEAR----------------------------- 176 (373)
T ss_pred HHHHHHhheeECCcccHHHHhcc-CCCeEEECCcchhhhccCCC--HHHHH-----------------------------
Confidence 33456899999999988887666 88888887762233322221 11111
Q ss_pred chhccccccccccCCCCCeEEEEEec-CCC-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEE
Q 011690 247 TIFTSLAGIDVFLKPNRPALVVSSTS-WTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 324 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~i~~~g~-~~~-~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 324 (479)
... +.++++++.+..|+ -.+ .+....+++++..+.++ +|+++
T Consensus 177 --------~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~---------------------------~p~l~ 220 (373)
T PF02684_consen 177 --------EKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQ---------------------------RPDLQ 220 (373)
T ss_pred --------Hhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeE
Confidence 112 45677777777663 322 45668889999999886 99999
Q ss_pred EEEEecCCChHH-HHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe-cC
Q 011690 325 FIITGKGPDKES-YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SY 402 (479)
Q Consensus 325 l~IvG~G~~~~~-l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas-~~ 402 (479)
+++..-....+. +++..+..+. ++...-. ..+-.+.+++||+.++. +| ++.+|++.+|+|.|.. ..
T Consensus 221 fvvp~a~~~~~~~i~~~~~~~~~-~~~~~~~---~~~~~~~m~~ad~al~~----SG----TaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 221 FVVPVAPEVHEELIEEILAEYPP-DVSIVII---EGESYDAMAAADAALAA----SG----TATLEAALLGVPMVVAYKV 288 (373)
T ss_pred EEEecCCHHHHHHHHHHHHhhCC-CCeEEEc---CCchHHHHHhCcchhhc----CC----HHHHHHHHhCCCEEEEEcC
Confidence 998875443333 4555444433 2222221 45677799999999975 33 4999999999996655 44
Q ss_pred ccchh-----ccccCccEE------------Ee---CCHHHHHHHHHHHHhc
Q 011690 403 SCIEE-----LVKVDKNGL------------LF---SSSSELADQLLMLFKG 434 (479)
Q Consensus 403 ~~~~e-----~i~~~~~G~------------l~---~~~~~la~~l~~l~~~ 434 (479)
+.+.. +++..--|+ +. -+++.+++.+..++.+
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 44321 221111111 11 2488999999999994
No 114
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.74 E-value=2.5e-06 Score=96.02 Aligned_cols=188 Identities=16% Similarity=0.068 Sum_probs=128.8
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC-Ch---
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP-DK--- 334 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~-~~--- 334 (479)
+.++. .+|++++|+..+|+.+.++..+..+.+-+ .+ ... .+.|++.|++. ..
T Consensus 474 ldpd~-ltigfarRfa~YKR~~Lil~dl~rl~~il-------------------~~---~~~-pvQ~IfaGKAhP~d~~g 529 (778)
T cd04299 474 LDPNV-LTIGFARRFATYKRATLLLRDPERLKRLL-------------------ND---PER-PVQFIFAGKAHPADEPG 529 (778)
T ss_pred cCCCc-cEEeeeecchhhhhHHHHHHHHHHHHHHh-------------------hC---CCC-CeEEEEEEecCccchHH
Confidence 34554 38999999999999999999888776420 00 013 49999999884 11
Q ss_pred HHH----HHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhcc
Q 011690 335 ESY----EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 409 (479)
Q Consensus 335 ~~l----~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i 409 (479)
..+ .+.+++... .+|.|+-. .+.+--..+++.||+.+.|++. .-|..|+.=.=||..|.+-+++--|...|-.
T Consensus 530 K~iIk~i~~~a~~p~~~~kVvfle~-Yd~~lA~~LvaG~DvwLn~prr-p~EAsGTSgMKA~~NG~LnlSvlDGww~E~~ 607 (778)
T cd04299 530 KELIQEIVEFSRRPEFRGRIVFLED-YDMALARHLVQGVDVWLNTPRR-PLEASGTSGMKAALNGGLNLSVLDGWWDEGY 607 (778)
T ss_pred HHHHHHHHHHHhCcCCCCcEEEEcC-CCHHHHHHHHhhhhhcccCCCC-CCCCCccchHHHHHcCCeeeecccCcccccc
Confidence 223 333332233 47888765 5677778899999999998443 2456666778899999999999999888887
Q ss_pred ccCccEEEeCC--------------HHHHHHHHHH-HHhcCCC-----CHHHHHHHHHHHHH-hhhhhchHHHHHHHHHH
Q 011690 410 KVDKNGLLFSS--------------SSELADQLLM-LFKGFPD-----DSDVLKKLRNGTLE-MGLSARWATEWEEHAKP 468 (479)
Q Consensus 410 ~~~~~G~l~~~--------------~~~la~~l~~-l~~~~~~-----~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~ 468 (479)
++.||+.+++ +++|.+.|++ ++-.|-+ .+..+.+|.+++.. ....++|+.+-++.+.+
T Consensus 608 -~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~ 686 (778)
T cd04299 608 -DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVER 686 (778)
T ss_pred -CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 7899999943 4467777754 3312211 25556666655554 23467888887777777
Q ss_pred HHHHH
Q 011690 469 LITEV 473 (479)
Q Consensus 469 ~~~~~ 473 (479)
++...
T Consensus 687 ~Y~p~ 691 (778)
T cd04299 687 FYLPA 691 (778)
T ss_pred hHHHH
Confidence 76543
No 115
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.53 E-value=2e-05 Score=81.53 Aligned_cols=239 Identities=19% Similarity=0.193 Sum_probs=132.6
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCc--hhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRS--HFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
.+||+|++++ .....+++.+++...++| |+..|.-- +-+... ...... ...+.+.|+..++
T Consensus 66 ~~Pd~Vlv~G--D~~~~la~alaA~~~~ip-v~HieaGl------Rs~d~~~g~~de~~--------R~~i~~la~lhf~ 128 (346)
T PF02350_consen 66 EKPDAVLVLG--DRNEALAAALAAFYLNIP-VAHIEAGL------RSGDRTEGMPDEIN--------RHAIDKLAHLHFA 128 (346)
T ss_dssp HT-SEEEEET--TSHHHHHHHHHHHHTT-E-EEEES-----------S-TTSSTTHHHH--------HHHHHHH-SEEEE
T ss_pred cCCCEEEEEc--CCchHHHHHHHHHHhCCC-EEEecCCC------CccccCCCCchhhh--------hhhhhhhhhhhcc
Confidence 7999999998 355566667788899999 55555321 000011 122222 2345678999999
Q ss_pred eCHHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 178 VTQAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
.|+..++.|.+. |.+ +.++-|.-.+.+.. .+. +.. ..+. .
T Consensus 129 ~t~~~~~~L~~~-G~~~~rI~~vG~~~~D~l~~----~~~----~~~-------------------------~~~~---~ 171 (346)
T PF02350_consen 129 PTEEARERLLQE-GEPPERIFVVGNPGIDALLQ----NKE----EIE-------------------------EKYK---N 171 (346)
T ss_dssp SSHHHHHHHHHT-T--GGGEEE---HHHHHHHH----HHH----TTC-------------------------C-HH---H
T ss_pred CCHHHHHHHHhc-CCCCCeEEEEChHHHHHHHH----hHH----HHh-------------------------hhhh---h
Confidence 999999999887 875 55554421010000 000 000 0000 0
Q ss_pred cccccCCCCCeEEEEEecCCC---CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC
Q 011690 255 IDVFLKPNRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 331 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~~g~~~~---~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G 331 (479)
..+.....++.++++.=+.+. .+....+.++++.+.+ .+++.+++....
T Consensus 172 ~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~----------------------------~~~~~vi~~~hn 223 (346)
T PF02350_consen 172 SGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAE----------------------------RQNVPVIFPLHN 223 (346)
T ss_dssp HHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHH----------------------------HTTEEEEEE--S
T ss_pred HHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHh----------------------------cCCCcEEEEecC
Confidence 000001344545555433322 2345667777777665 256888887752
Q ss_pred --CChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHH-HHHhCCCcEEEec-Cccchh
Q 011690 332 --PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV-DMFGCGLPVCAVS-YSCIEE 407 (479)
Q Consensus 332 --~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ll-Eama~G~PVIas~-~~~~~e 407 (479)
.....+.+..+++ ++|.+... ++..++..+++.|+++|. .|+| +. ||.++|+|+|.-. .+.-++
T Consensus 224 ~p~~~~~i~~~l~~~--~~v~~~~~-l~~~~~l~ll~~a~~vvg---dSsG------I~eEa~~lg~P~v~iR~~geRqe 291 (346)
T PF02350_consen 224 NPRGSDIIIEKLKKY--DNVRLIEP-LGYEEYLSLLKNADLVVG---DSSG------IQEEAPSLGKPVVNIRDSGERQE 291 (346)
T ss_dssp -HHHHHHHHHHHTT---TTEEEE-----HHHHHHHHHHESEEEE---SSHH------HHHHGGGGT--EEECSSS-S-HH
T ss_pred CchHHHHHHHHhccc--CCEEEECC-CCHHHHHHHHhcceEEEE---cCcc------HHHHHHHhCCeEEEecCCCCCHH
Confidence 2334444444443 59999998 999999999999999985 2223 45 9999999999994 666778
Q ss_pred ccccCccEEEe-CCHHHHHHHHHHHHh
Q 011690 408 LVKVDKNGLLF-SSSSELADQLLMLFK 433 (479)
Q Consensus 408 ~i~~~~~G~l~-~~~~~la~~l~~l~~ 433 (479)
-+..+.+-+ + .+.+++.+++.++++
T Consensus 292 ~r~~~~nvl-v~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 292 GRERGSNVL-VGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHTTSEEE-ETSSHHHHHHHHHHHHH
T ss_pred HHhhcceEE-eCCCHHHHHHHHHHHHh
Confidence 887777666 6 779999999999998
No 116
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.52 E-value=5e-05 Score=77.37 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=54.2
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc------hhccccCccEEEeCC
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI------EELVKVDKNGLLFSS 420 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~------~e~i~~~~~G~l~~~ 420 (479)
+++.+.+. .+ +++.++|..||++|+- .| . .++.|++++|+|++.....+. ...+.+...|...+.
T Consensus 229 ~~v~~~~~-~~-~~~~~~l~~ad~vI~~----~G--~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~ 299 (321)
T TIGR00661 229 ENVEIRRI-TT-DNFKELIKNAELVITH----GG--F-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299 (321)
T ss_pred CCEEEEEC-Ch-HHHHHHHHhCCEEEEC----CC--h-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh
Confidence 68999884 55 7899999999999973 23 1 278999999999999987653 234656667776632
Q ss_pred HH-HHHHHHHHHHh
Q 011690 421 SS-ELADQLLMLFK 433 (479)
Q Consensus 421 ~~-~la~~l~~l~~ 433 (479)
.+ ++.+++...++
T Consensus 300 ~~~~~~~~~~~~~~ 313 (321)
T TIGR00661 300 KELRLLEAILDIRN 313 (321)
T ss_pred hhHHHHHHHHhccc
Confidence 11 44444444444
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.48 E-value=2.4e-06 Score=90.85 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=113.8
Q ss_pred cccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCC
Q 011690 253 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 332 (479)
Q Consensus 253 ~~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~ 332 (479)
.|..++++.+. +++.+..++. |=-+..++++..+.++ -|+.+|.+...+.
T Consensus 275 ~R~~~gLp~d~-vvF~~fn~~~--KI~p~~l~~W~~IL~~---------------------------vP~S~L~L~~~~~ 324 (468)
T PF13844_consen 275 TRAQYGLPEDA-VVFGSFNNLF--KISPETLDLWARILKA---------------------------VPNSRLWLLRFPA 324 (468)
T ss_dssp ETGGGT--SSS-EEEEE-S-GG--G--HHHHHHHHHHHHH---------------------------STTEEEEEEETST
T ss_pred CHHHcCCCCCc-eEEEecCccc--cCCHHHHHHHHHHHHh---------------------------CCCcEEEEeeCCH
Confidence 57888998765 3555555554 7778889999888876 8999998876543
Q ss_pred -ChHHHHHHHHHcCC--CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch---
Q 011690 333 -DKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE--- 406 (479)
Q Consensus 333 -~~~~l~~~~~~~~l--~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~--- 406 (479)
..+.+++.+++.|+ ++|.|.+. .+.++....++.+|+++=+...+ =+++.+||+.+|+|||+-......
T Consensus 325 ~~~~~l~~~~~~~Gv~~~Ri~f~~~-~~~~ehl~~~~~~DI~LDT~p~n----G~TTt~dALwmGVPvVTl~G~~~~sR~ 399 (468)
T PF13844_consen 325 SGEARLRRRFAAHGVDPDRIIFSPV-APREEHLRRYQLADICLDTFPYN----GGTTTLDALWMGVPVVTLPGETMASRV 399 (468)
T ss_dssp THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS------SHHHHHHHHHT--EEB---SSGGGSH
T ss_pred HHHHHHHHHHHHcCCChhhEEEcCC-CCHHHHHHHhhhCCEEeeCCCCC----CcHHHHHHHHcCCCEEeccCCCchhHH
Confidence 34678888889999 58999996 88899999999999999763222 245999999999999987533221
Q ss_pred --hcccc-CccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhch-HHHHHHHHHHHHH
Q 011690 407 --ELVKV-DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARW-ATEWEEHAKPLIT 471 (479)
Q Consensus 407 --e~i~~-~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w-~~~~~~~~~~~~~ 471 (479)
.++.. |-.-+++.|.+++.+.-.+|.+ |++.++.+|...++.. .+.-| ...|-+.++..+.
T Consensus 400 ~aSiL~~lGl~ElIA~s~~eYv~~Av~La~----D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 400 GASILRALGLPELIADSEEEYVEIAVRLAT----DPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhcCCCHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 12221 3334566889999999999999 5899999988887532 12222 3344444444443
No 118
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.44 E-value=0.00026 Score=76.14 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=92.1
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec--CC-------ChH
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK--GP-------DKE 335 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~--G~-------~~~ 335 (479)
.+|+.+.|++.-||+..=+.|+..+.++ .|....++.|+=++- .. .++
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~-----------------------~P~~~~kv~liQi~~psr~~~~~y~~~~~ 333 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLER-----------------------YPEYRGKVVLIQIAVPSREDVPEYQELRR 333 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH------------------------GGGTTTEEEEEE--B-STTSHHHHHHHH
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHh-----------------------CcCccCcEEEEEEeeccCccchhHHHHHH
Confidence 5899999999999999999999988876 111233578876662 11 123
Q ss_pred HHHHHHHHc----CC---CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCc----EEEecCcc
Q 011690 336 SYEEKIRRL----RL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP----VCAVSYSC 404 (479)
Q Consensus 336 ~l~~~~~~~----~l---~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~P----VIas~~~~ 404 (479)
++++.+.+. |- .-|.+...-++.+++..+|+.||+++++ +...|+-++..|+.+|..+ +|.|..+|
T Consensus 334 ~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvT---slrDGmNLva~Eyva~q~~~~GvLiLSefaG 410 (474)
T PF00982_consen 334 EVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVT---SLRDGMNLVAKEYVACQDDNPGVLILSEFAG 410 (474)
T ss_dssp HHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE-----SSBS--HHHHHHHHHS-TS--EEEEETTBG
T ss_pred HHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEec---chhhccCCcceEEEEEecCCCCceEeeccCC
Confidence 344444333 22 2356554348999999999999999997 6666777899999999876 77788777
Q ss_pred chhccccCccEEEeC--CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 011690 405 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKL 445 (479)
Q Consensus 405 ~~e~i~~~~~G~l~~--~~~~la~~l~~l~~~~~~~~~~~~~~ 445 (479)
..+.+.+ ..++++ |.+++|++|.+.++. .+++++..
T Consensus 411 aa~~L~~--~al~VNP~d~~~~A~ai~~AL~M---~~~Er~~r 448 (474)
T PF00982_consen 411 AAEQLSE--AALLVNPWDIEEVADAIHEALTM---PPEERKER 448 (474)
T ss_dssp GGGT-TT--S-EEE-TT-HHHHHHHHHHHHT-----HHHHHHH
T ss_pred HHHHcCC--ccEEECCCChHHHHHHHHHHHcC---CHHHHHHH
Confidence 7777732 337774 589999999999996 34444433
No 119
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.43 E-value=8.8e-05 Score=80.96 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=138.7
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCC--cEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRS--AFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~--~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
++||++++-+-|.+..- +++.+++ .|+ |+|.-.- .+.+. + +.. | -+.+.+.+|+++|
T Consensus 309 ~kPD~vIlID~PgFNlr-LAK~lkk-~Gi~ipviyYVs---PqVWA--W--R~~-----R-------ikki~k~vD~ll~ 367 (608)
T PRK01021 309 TNPRTVICIDFPDFHFL-LIKKLRK-RGYKGKIVHYVC---PSIWA--W--RPK-----R-------KTILEKYLDLLLL 367 (608)
T ss_pred cCCCEEEEeCCCCCCHH-HHHHHHh-cCCCCCEEEEEC---cccee--e--Ccc-----h-------HHHHHHHhhhhee
Confidence 79999887776655543 3444433 354 7654221 11111 0 000 1 1233456899999
Q ss_pred eCHHHHHHHHHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhcccccccc
Q 011690 178 VTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 257 (479)
Q Consensus 178 vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (479)
+=+...+.+.+. |.+++.+-|.-.+...+.. .+.+...+ +
T Consensus 368 IfPFE~~~y~~~-gv~v~yVGHPL~d~i~~~~--~~~~~r~~-------------------------------------l 407 (608)
T PRK01021 368 ILPFEQNLFKDS-PLRTVYLGHPLVETISSFS--PNLSWKEQ-------------------------------------L 407 (608)
T ss_pred cCccCHHHHHhc-CCCeEEECCcHHhhcccCC--CHHHHHHH-------------------------------------c
Confidence 999999888765 9998888776222222111 11222222 2
Q ss_pred ccCCCCCeEEEEEec-CC-CCCCHHHHHHHHH--HhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-C
Q 011690 258 FLKPNRPALVVSSTS-WT-PDEDFGILLEAAL--MYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-P 332 (479)
Q Consensus 258 ~~~~~~~~~i~~~g~-~~-~~K~~~~lieA~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~ 332 (479)
+++++++.+.+.-|+ -. -.+..+.+++|++ .+ .++.++++.... .
T Consensus 408 gl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l------------------------------~~~l~fvvp~a~~~ 457 (608)
T PRK01021 408 HLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSL------------------------------ASTHQLLVSSANPK 457 (608)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHh------------------------------ccCeEEEEecCchh
Confidence 455566766666663 32 2456778888887 33 235788775432 2
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe-cCccchh----
Q 011690 333 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEE---- 407 (479)
Q Consensus 333 ~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas-~~~~~~e---- 407 (479)
..+.+++.+++.+.-.+.+.. .++-.+++++||+.+.. + |++.+|++.+|+|.|.. ..+...-
T Consensus 458 ~~~~i~~~~~~~~~~~~~ii~----~~~~~~~m~aaD~aLaa----S----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak 525 (608)
T PRK01021 458 YDHLILEVLQQEGCLHSHIVP----SQFRYELMRECDCALAK----C----GTIVLETALNQTPTIVTCQLRPFDTFLAK 525 (608)
T ss_pred hHHHHHHHHhhcCCCCeEEec----CcchHHHHHhcCeeeec----C----CHHHHHHHHhCCCEEEEEecCHHHHHHHH
Confidence 345666665443321233332 22236899999999985 3 34999999999997664 4443221
Q ss_pred -ccc-------------cCc--cEEE----eCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 408 -LVK-------------VDK--NGLL----FSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 408 -~i~-------------~~~--~G~l----~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+++ +.. -=++ --+++.+++.+ +++. |++.++++++...+.
T Consensus 526 ~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~----d~~~r~~~~~~l~~l 585 (608)
T PRK01021 526 YIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILK----TSQSKEKQKDACRDL 585 (608)
T ss_pred HHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhc----CHHHHHHHHHHHHHH
Confidence 111 110 0122 12488899886 7777 466677776665553
No 120
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.40 E-value=0.00019 Score=76.83 Aligned_cols=163 Identities=8% Similarity=0.085 Sum_probs=112.6
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCC----CEEEEEEecC-----CC--
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKG-----PD-- 333 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~l~IvG~G-----~~-- 333 (479)
.+|+.+-|++.-||+..=++|+..+.++ +| ++.|+-+.-- +.
T Consensus 256 ~lilgVDRLDytKGi~~rl~Afe~fL~~---------------------------~Pe~~gkvvlvQia~psR~~v~~Y~ 308 (474)
T PRK10117 256 QNIFSVERLDYSKGLPERFLAYEALLEK---------------------------YPQHHGKIRYTQIAPTSRGDVQAYQ 308 (474)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHHh---------------------------ChhhcCCEEEEEEcCCCCCccHHHH
Confidence 4899999999999999999999998876 55 4677756521 11
Q ss_pred --hHHHHHHHHHcC-------CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC-----cEEE
Q 011690 334 --KESYEEKIRRLR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-----PVCA 399 (479)
Q Consensus 334 --~~~l~~~~~~~~-------l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~-----PVIa 399 (479)
+.++++.+.+.+ ..-|.+...-++.+++..+|+.||++++. +...|+-.+.-|+.+|.. .+|-
T Consensus 309 ~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVT---plRDGMNLVAkEyva~q~~~~~GvLIL 385 (474)
T PRK10117 309 DIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVT---PLRDGMNLVAKEYVAAQDPANPGVLVL 385 (474)
T ss_pred HHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEec---ccccccccccchheeeecCCCCccEEE
Confidence 223333444432 12366665558999999999999999987 444455559999999976 3888
Q ss_pred ecCccchhccccCccEEEeC--CHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHhhhhhchHHHHHH
Q 011690 400 VSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKK----LRNGTLEMGLSARWATEWEE 464 (479)
Q Consensus 400 s~~~~~~e~i~~~~~G~l~~--~~~~la~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~w~~~~~~ 464 (479)
|..+|.++.+. ..++++ |.+++|++|.+.+.. ..++++. |++.... .....|.+..-.
T Consensus 386 SefAGaA~~L~---~AllVNP~d~~~~A~Ai~~AL~M---p~~Er~~R~~~l~~~v~~-~dv~~W~~~fL~ 449 (474)
T PRK10117 386 SQFAGAANELT---SALIVNPYDRDEVAAALDRALTM---PLAERISRHAEMLDVIVK-NDINHWQECFIS 449 (474)
T ss_pred ecccchHHHhC---CCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhh-CCHHHHHHHHHH
Confidence 88888777773 367774 699999999999996 3344333 2333333 235556555433
No 121
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=3.4e-05 Score=79.00 Aligned_cols=120 Identities=20% Similarity=0.311 Sum_probs=93.9
Q ss_pred CcEEEecCCCCc-chHHHHHHcCCEEEEcccCCC---CCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHH
Q 011690 347 KRVAFRTMWLSA-EDYPLLLGSADLGVCLHTSSS---GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSS 422 (479)
Q Consensus 347 ~~V~f~G~~~~~-~~~~~~l~~adi~v~p~~~s~---~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~ 422 (479)
+++...|. ++. ..++..++..|+.+.-+..+. +.++++.++|+|+||.|.+++...+..-.+.+|+.-++..|.+
T Consensus 237 ~~~~yIg~-~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~k 315 (373)
T COG4641 237 PNVQYIGY-YNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSK 315 (373)
T ss_pred chhhhhhc-cCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHH
Confidence 57888886 555 899999999999887544442 2224789999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q 011690 423 ELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 474 (479)
Q Consensus 423 ~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 474 (479)
++.+++..++.+ ++.++++.+.+.+.. ..+ .+.++-+.++++++.
T Consensus 316 dl~~~~~yll~h----~~erkeiae~~ye~V-~~~--ht~~~r~~~~~~~i~ 360 (373)
T COG4641 316 DLKEKLKYLLNH----PDERKEIAECAYERV-LAR--HTYEERIFKLLNEIA 360 (373)
T ss_pred HHHHHHHHHhcC----cchHHHHHHhhHHHH-HHh--ccHHHHHHHHHHHHH
Confidence 999999999995 788999998888732 222 344444555555544
No 122
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=0.00014 Score=74.97 Aligned_cols=258 Identities=18% Similarity=0.191 Sum_probs=161.0
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+||+|.+|+ ...+.+++.+++++.++|+- |--+ +++-+...+-..+. .+.....|+..++.|
T Consensus 91 ~kPD~VlVhG--DT~t~lA~alaa~~~~IpV~---HvEA----GlRt~~~~~PEE~N--------R~l~~~~S~~hfapt 153 (383)
T COG0381 91 EKPDLVLVHG--DTNTTLAGALAAFYLKIPVG---HVEA----GLRTGDLYFPEEIN--------RRLTSHLSDLHFAPT 153 (383)
T ss_pred hCCCEEEEeC--CcchHHHHHHHHHHhCCceE---EEec----ccccCCCCCcHHHH--------HHHHHHhhhhhcCCh
Confidence 8999999998 45566666788888898864 3211 01111111000111 234556799999999
Q ss_pred HHHHHHHHHhhCCe---EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccc
Q 011690 180 QAMQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 256 (479)
Q Consensus 180 ~~~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (479)
+..++.|.+. |.+ +.++-|...+.............. .. ..
T Consensus 154 e~ar~nLl~E-G~~~~~IfvtGnt~iDal~~~~~~~~~~~~-------------------------------~~----~~ 197 (383)
T COG0381 154 EIARKNLLRE-GVPEKRIFVTGNTVIDALLNTRDRVLEDSK-------------------------------IL----AK 197 (383)
T ss_pred HHHHHHHHHc-CCCccceEEeCChHHHHHHHHHhhhccchh-------------------------------hH----Hh
Confidence 9999998877 665 666666522211111000000000 00 00
Q ss_pred cccCCCCCeEEEEEecCCC-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChH
Q 011690 257 VFLKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 335 (479)
Q Consensus 257 ~~~~~~~~~~i~~~g~~~~-~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~ 335 (479)
+....++..++++.=|-+- .+++..+++|+..+.++ +|+..++.-=. .+.
T Consensus 198 ~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~---------------------------~~~~~viyp~H--~~~ 248 (383)
T COG0381 198 GLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEE---------------------------YPDVIVIYPVH--PRP 248 (383)
T ss_pred hhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHh---------------------------CCCceEEEeCC--CCh
Confidence 0011233345555444333 38899999999998886 67666655432 224
Q ss_pred HHHHHH-HHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-CccchhccccC
Q 011690 336 SYEEKI-RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVD 412 (479)
Q Consensus 336 ~l~~~~-~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~e~i~~~ 412 (479)
.+++.. +.++- ++|.+..+ +...++..++..|-+.+. .|.| -.=||-..|+||+.-. ...-+|-++.|
T Consensus 249 ~v~e~~~~~L~~~~~v~li~p-l~~~~f~~L~~~a~~ilt---DSGg-----iqEEAp~lg~Pvl~lR~~TERPE~v~ag 319 (383)
T COG0381 249 RVRELVLKRLKNVERVKLIDP-LGYLDFHNLMKNAFLILT---DSGG-----IQEEAPSLGKPVLVLRDTTERPEGVEAG 319 (383)
T ss_pred hhhHHHHHHhCCCCcEEEeCC-cchHHHHHHHHhceEEEe---cCCc-----hhhhHHhcCCcEEeeccCCCCccceecC
Confidence 455555 44444 58999998 999999999999976663 3444 4679999999999886 66678877554
Q ss_pred ccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 413 KNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 413 ~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+-.++ .+.+.+.+++..+++ +++.+++|++..--++
T Consensus 320 -t~~lvg~~~~~i~~~~~~ll~----~~~~~~~m~~~~npYg 356 (383)
T COG0381 320 -TNILVGTDEENILDAATELLE----DEEFYERMSNAKNPYG 356 (383)
T ss_pred -ceEEeCccHHHHHHHHHHHhh----ChHHHHHHhcccCCCc
Confidence 44555 568899999999999 5888888877655433
No 123
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00028 Score=75.60 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=122.6
Q ss_pred ccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh-
Q 011690 256 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK- 334 (479)
Q Consensus 256 ~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~- 334 (479)
.++++++. +++.+.+ ...|-.+.+..-+.++.+. -|+-.|.+-|.|++.
T Consensus 423 ~lglp~~a-vVf~c~~--n~~K~~pev~~~wmqIL~~---------------------------vP~Svl~L~~~~~~~~ 472 (620)
T COG3914 423 QLGLPEDA-VVFCCFN--NYFKITPEVFALWMQILSA---------------------------VPNSVLLLKAGGDDAE 472 (620)
T ss_pred hcCCCCCe-EEEEecC--CcccCCHHHHHHHHHHHHh---------------------------CCCcEEEEecCCCcHH
Confidence 34676554 2343433 3447778888887777665 899999999987543
Q ss_pred --HHHHHHHHHcCC--CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch----
Q 011690 335 --ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE---- 406 (479)
Q Consensus 335 --~~l~~~~~~~~l--~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~---- 406 (479)
..+++.+++.|+ +++.|.++ .+.++..+.|+-||+++=. ...+=.++.+|++-||+||++-....+.
T Consensus 473 ~~~~l~~la~~~Gv~~eRL~f~p~-~~~~~h~a~~~iADlvLDT----yPY~g~TTa~daLwm~vPVlT~~G~~FasR~~ 547 (620)
T COG3914 473 INARLRDLAEREGVDSERLRFLPP-APNEDHRARYGIADLVLDT----YPYGGHTTASDALWMGVPVLTRVGEQFASRNG 547 (620)
T ss_pred HHHHHHHHHHHcCCChhheeecCC-CCCHHHHHhhchhheeeec----ccCCCccchHHHHHhcCceeeeccHHHHHhhh
Confidence 567888899898 68999998 9999999999999999964 2222345899999999999986433321
Q ss_pred -hccc-cCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-hhhch-HHHHHHHHHHHHHHHHhh
Q 011690 407 -ELVK-VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARW-ATEWEEHAKPLITEVISQ 476 (479)
Q Consensus 407 -e~i~-~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w-~~~~~~~~~~~~~~~~~~ 476 (479)
.++. -|..-+++.|.++..+.-..+-+ |...+++.|....... .+--| ...+-+.++.++.+..++
T Consensus 548 ~si~~~agi~e~vA~s~~dYV~~av~~g~----dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 548 ASIATNAGIPELVADSRADYVEKAVAFGS----DRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred HHHHHhcCCchhhcCCHHHHHHHHHHhcc----cHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHh
Confidence 2222 24445556777777766666666 4666666665443322 11123 345556677777776665
No 124
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.30 E-value=0.00072 Score=77.59 Aligned_cols=166 Identities=8% Similarity=0.034 Sum_probs=111.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCC----EEEEEEe-----cCCChH
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITG-----KGPDKE 335 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~l~IvG-----~G~~~~ 335 (479)
.+|+.+.|++.-||+..=+.|+..+.++ +|+ +.|+-+. ++++.+
T Consensus 340 ~~ilgVDrlD~~KGi~~kl~A~e~~L~~---------------------------~P~~~gkvvlvQia~psr~~~~~y~ 392 (854)
T PLN02205 340 IMLLGVDDMDIFKGISLKLLAMEQLLMQ---------------------------HPEWQGKVVLVQIANPARGKGKDVK 392 (854)
T ss_pred EEEEEccCcccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEecCCCcccHHHH
Confidence 5899999999999999999999998876 664 4676555 233333
Q ss_pred HHH----HHHHHc----C---CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC---------
Q 011690 336 SYE----EKIRRL----R---LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL--------- 395 (479)
Q Consensus 336 ~l~----~~~~~~----~---l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~--------- 395 (479)
+++ +.+.+. | ..-|.+...-++.+++..+|+.||++++. +...|+-.+..|+.+|..
T Consensus 393 ~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT---~lRDGMNLva~Eyia~~~~~~~~~~~~ 469 (854)
T PLN02205 393 EVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVT---AVRDGMNLIPYEYIISRQGNEKLDKLL 469 (854)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEec---cccccccccchheeEEccCcccccccc
Confidence 333 333332 2 23477775448999999999999999997 544555569999999864
Q ss_pred ----------cEEEecCccchhccccCccEEEe--CCHHHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHhhhhhchH
Q 011690 396 ----------PVCAVSYSCIEELVKVDKNGLLF--SSSSELADQLLMLFKGFPDDSDVLKK----LRNGTLEMGLSARWA 459 (479)
Q Consensus 396 ----------PVIas~~~~~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~w~ 459 (479)
.+|.|...|.+..+. ..+++ -|.+++|++|.+.++. ..++++. +.+.... .....|.
T Consensus 470 ~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d~~~~a~ai~~AL~m---~~~Er~~R~~~~~~~v~~-~d~~~W~ 542 (854)
T PLN02205 470 GLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWNIDAVADAMDSALEM---AEPEKQLRHEKHYRYVST-HDVGYWA 542 (854)
T ss_pred ccccccCCCCceEeeeccchhHHhC---cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhh-CCHHHHH
Confidence 367777666555552 36777 4599999999999996 2333322 2333332 2356676
Q ss_pred HHHHHHHH
Q 011690 460 TEWEEHAK 467 (479)
Q Consensus 460 ~~~~~~~~ 467 (479)
+..-.-+.
T Consensus 543 ~~fl~~l~ 550 (854)
T PLN02205 543 RSFLQDLE 550 (854)
T ss_pred HHHHHHHH
Confidence 65444333
No 125
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=0.0013 Score=70.34 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=116.3
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC--CCh-------
Q 011690 264 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG--PDK------- 334 (479)
Q Consensus 264 ~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G--~~~------- 334 (479)
..+|+.+-|++.-||+..=+.|+..+.++. || ...++.|+-++.. ...
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~----------------Pe-------~~~kvvliQi~~pSr~~v~~y~~~~ 338 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEY----------------PE-------WRGKVVLLQIAPPSREDVEEYQALR 338 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhC----------------hh-------hhCceEEEEecCCCccccHHHHHHH
Confidence 358999999999999999999999998751 11 1234777766633 112
Q ss_pred HHHHHHHHHc----C---CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC----cEEEecCc
Q 011690 335 ESYEEKIRRL----R---LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCAVSYS 403 (479)
Q Consensus 335 ~~l~~~~~~~----~---l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~----PVIas~~~ 403 (479)
..+++.+.+. | ..-|.|+-.-++.+++..+++.||++++. +...|+-.+..|+.+|-- |.|-|...
T Consensus 339 ~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVt---plrDGMNLvakEyVa~q~~~~G~LiLSeFa 415 (486)
T COG0380 339 LQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVT---PLRDGMNLVAKEYVAAQRDKPGVLILSEFA 415 (486)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeec---cccccccHHHHHHHHhhcCCCCcEEEeccc
Confidence 2233333333 2 23466766558999999999999999986 566677779999999854 78888877
Q ss_pred cchhccccCccEEEeC--CHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHhhhhhchHHHHHHH
Q 011690 404 CIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVL----KKLRNGTLEMGLSARWATEWEEH 465 (479)
Q Consensus 404 ~~~e~i~~~~~G~l~~--~~~~la~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~ 465 (479)
|.+..+. ..++++ |.+++|++|.+.++. ..+++ ++|.++..+ .....|.....+-
T Consensus 416 Gaa~~L~---~AliVNP~d~~~va~ai~~AL~m---~~eEr~~r~~~~~~~v~~-~d~~~W~~~fl~~ 476 (486)
T COG0380 416 GAASELR---DALIVNPWDTKEVADAIKRALTM---SLEERKERHEKLLKQVLT-HDVARWANSFLDD 476 (486)
T ss_pred cchhhhc---cCEeECCCChHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 7666663 277774 589999999999996 33333 334444444 3456666654433
No 126
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.21 E-value=0.001 Score=72.42 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CcEEEecCCCCcchHHHHH--HcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccCccEEEeC-
Q 011690 347 KRVAFRTMWLSAEDYPLLL--GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l--~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~~~G~l~~- 419 (479)
+||.+.+ |+|+.+ +| ..++++|. ..| .+ ++.||+.+|+|+|+....+ ....++..+.|...+
T Consensus 346 ~Nv~i~~-w~Pq~~---lL~hp~v~~fIt----HGG--~~-s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~ 414 (507)
T PHA03392 346 ANVLTQK-WFPQRA---VLKHKNVKAFVT----QGG--VQ-STDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414 (507)
T ss_pred CceEEec-CCCHHH---HhcCCCCCEEEe----cCC--cc-cHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc
Confidence 7898888 799866 66 45888884 222 22 7899999999999987443 445555667787762
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011690 420 ---SSSELADQLLMLFKGFPDDSDVLKKLRNG 448 (479)
Q Consensus 420 ---~~~~la~~l~~l~~~~~~~~~~~~~~~~~ 448 (479)
+.+++.+++.++++ ++..+++.++-
T Consensus 415 ~~~t~~~l~~ai~~vl~----~~~y~~~a~~l 442 (507)
T PHA03392 415 VTVSAAQLVLAIVDVIE----NPKYRKNLKEL 442 (507)
T ss_pred CCcCHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 47899999999998 45555444433
No 127
>PLN02208 glycosyltransferase family protein
Probab=98.16 E-value=0.018 Score=61.66 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=73.0
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcccc-CccEEEeC--
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKV-DKNGLLFS-- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~-~~~G~l~~-- 419 (479)
.++.+.+ |+|+.+ +|+...+..+. +. .|. ++++||+++|+|+|+....+ +...+.. -+.|..+.
T Consensus 311 ~g~~v~~-W~PQ~~---iL~H~~v~~Fv---tH-cG~-nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~ 381 (442)
T PLN02208 311 RGVVWGG-WVQQPL---ILDHPSIGCFV---NH-CGP-GTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSRE 381 (442)
T ss_pred CCcEeec-cCCHHH---HhcCCccCeEE---cc-CCc-hHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccc
Confidence 4566667 899988 77778775553 22 223 38999999999999986433 3343332 45676662
Q ss_pred -----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhc-hHHHHHHHHHHHHHHHH
Q 011690 420 -----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR-WATEWEEHAKPLITEVI 474 (479)
Q Consensus 420 -----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~ 474 (479)
+.+++++++.+++.+ ..+..+++|+++.++..... =..++ +.+..+++++.
T Consensus 382 ~~~~~~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~~~~~~~~gsS~-~~l~~~v~~l~ 438 (442)
T PLN02208 382 KTGWFSKESLSNAIKSVMDK---DSDLGKLVRSNHTKLKEILVSPGLLT-GYVDKFVEELQ 438 (442)
T ss_pred cCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHH
Confidence 568999999999984 23556777777776532211 01122 34566666553
No 128
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.15 E-value=0.00091 Score=68.84 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=48.5
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc---cchhccccCccEEEe--CCHHH
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS---CIEELVKVDKNGLLF--SSSSE 423 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~---~~~e~i~~~~~G~l~--~~~~~ 423 (479)
+.+... .-+..+++..||++|. .| ++-..||..+|+|.|.+..| +..+.+. +.|+++ .++++
T Consensus 233 ~~i~~~---~vd~~~Ll~~a~l~Ig-----~g---gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~--~~Gll~~~~~~~e 299 (335)
T PF04007_consen 233 VIIPPE---PVDGLDLLYYADLVIG-----GG---GTMAREAALLGTPAISCFPGKLLAVDKYLI--EKGLLYHSTDPDE 299 (335)
T ss_pred ccccCC---CCCHHHHHHhcCEEEe-----CC---cHHHHHHHHhCCCEEEecCCcchhHHHHHH--HCCCeEecCCHHH
Confidence 444443 4466689999999994 22 34789999999999987543 3334442 336666 67888
Q ss_pred HHHHHHHHHh
Q 011690 424 LADQLLMLFK 433 (479)
Q Consensus 424 la~~l~~l~~ 433 (479)
+.+.+.+...
T Consensus 300 i~~~v~~~~~ 309 (335)
T PF04007_consen 300 IVEYVRKNLG 309 (335)
T ss_pred HHHHHHHhhh
Confidence 8885555444
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.10 E-value=0.001 Score=67.02 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=134.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+.+-+++|+-... .++++.+..+.. +.=+.||-++-++...+ .+...+++..+ .+...++.-++++ +
T Consensus 38 ~r~~rff~HGqFn~-~lwlall~g~~~--~~q~yWhiWGaDLYe~~---~~lk~rlfy~l-----RR~aq~rvg~v~a-t 105 (322)
T PRK02797 38 NRAQRFFLHGQFNP-TLWLALLSGKIK--PKQFYWHIWGADLYEES---KGLKFRLFYPL-----RRLAQKRVGHVFA-T 105 (322)
T ss_pred CccceEEEecCCCH-HHHHHHHhCCcC--ccceEEEEEChhhhhcc---cchhHHHHHHH-----HHHHHhhcCeEEE-e
Confidence 67788899984322 223222222121 22446998876655322 23333333333 6667777888888 7
Q ss_pred HHHHHHH-HHhhCCeEEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccc
Q 011690 180 QAMQHEL-AQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 258 (479)
Q Consensus 180 ~~~~~~l-~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
+....++ ++.++.+...+|- |+.....-..... .
T Consensus 106 rGD~~~~a~~~~~v~~~llyf-------pt~m~~~l~~~~~--------------------------------------~ 140 (322)
T PRK02797 106 RGDLSYFAQRHPKVPGSLLYF-------PTRMDPSLNTMAN--------------------------------------D 140 (322)
T ss_pred cchHHHHHHhcCCCCccEEec-------CCcchhhhccccc--------------------------------------c
Confidence 7777775 4556777444432 2211110000000 0
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEE-Eec--C--CC
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGK--G--PD 333 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~I-vG~--G--~~ 333 (479)
-.+..+..|+..-+-+|..++..++++++... ..++++++ .|. | .+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~-----------------------------~~~v~ii~PlsYp~gn~~Y 191 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQF-----------------------------GDNVKIIVPMGYPANNQAY 191 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHh-----------------------------CCCeEEEEECCcCCCCHHH
Confidence 11223445555556777788888888776653 55788765 455 3 23
Q ss_pred hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccchhcccc
Q 011690 334 KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKV 411 (479)
Q Consensus 334 ~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~e~i~~ 411 (479)
.+++++.++++-- +++..+...++-+|+..+|+.||++++-+.+. .|+| .+.=.+.+|+||+.+. .+-..++.+.
T Consensus 192 i~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQ--QgiG-nl~lLi~~G~~v~l~r~n~fwqdl~e~ 268 (322)
T PRK02797 192 IEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQ--QGIG-TLCLLIQLGKPVVLSRDNPFWQDLTEQ 268 (322)
T ss_pred HHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechh--hHHh-HHHHHHHCCCcEEEecCCchHHHHHhC
Confidence 4555556666533 67777766699999999999999999976554 4466 5777899999999985 6666777655
Q ss_pred Ccc
Q 011690 412 DKN 414 (479)
Q Consensus 412 ~~~ 414 (479)
+..
T Consensus 269 gv~ 271 (322)
T PRK02797 269 GLP 271 (322)
T ss_pred CCe
Confidence 543
No 130
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.03 E-value=0.027 Score=60.58 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=62.3
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccC-ccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVD-KNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~-~~G~l~--- 418 (479)
.++.+.+ |+|+.+ +|+..++..+. +.+ |. .+++||+++|+|+|+-...+ ....+... +.|+-+
T Consensus 323 ~~~~v~~-w~pQ~~---iL~h~~v~~fv---tHg-G~-nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~ 393 (459)
T PLN02448 323 DMGLVVP-WCDQLK---VLCHSSVGGFW---THC-GW-NSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKRE 393 (459)
T ss_pred CCEEEec-cCCHHH---HhccCccceEE---ecC-ch-hHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecc
Confidence 4677777 899887 66677774432 211 22 28999999999999987443 33444332 445554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 419 ------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 419 ------~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
-+.+++++++.+++.+ ..++.+.+|+++.+++
T Consensus 394 ~~~~~~~~~~~l~~av~~vl~~---~~~~~~~~r~~a~~~~ 431 (459)
T PLN02448 394 VGEETLVGREEIAELVKRFMDL---ESEEGKEMRRRAKELQ 431 (459)
T ss_pred cccCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 1468999999999984 1245566776666543
No 131
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=97.97 E-value=0.00038 Score=72.16 Aligned_cols=220 Identities=13% Similarity=0.206 Sum_probs=104.0
Q ss_pred HhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHHHHhhCCe-EEEecCC-C
Q 011690 124 SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-P 201 (479)
Q Consensus 124 ~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~ 201 (479)
...+.++|-.||+.+..-.+..........+ . -....+..|.+++.|+.+++.+.+.++.+ -.++.-| |
T Consensus 96 ~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~---~------~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~P 166 (369)
T PF04464_consen 96 KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRK---N------YKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYP 166 (369)
T ss_dssp --TTSEEEE--SS--SB--GGG-S---TS-H---H------HHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--G
T ss_pred cCCCcEEEEecCCCcccccchhccccccchh---h------hhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCC
Confidence 3467788889999863221111100000000 1 12334678999999999999999888877 3444455 2
Q ss_pred -CCC-CCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccccCCCCCeEEEEEecCCCCCCH
Q 011690 202 -PEF-FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDF 279 (479)
Q Consensus 202 -~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~K~~ 279 (479)
.+. +.... ..+..+... ++...++. +|++.-.|.....-
T Consensus 167 R~D~l~~~~~-~~~~~i~~~-------------------------------------~~~~~~~k-~ILyaPT~R~~~~~ 207 (369)
T PF04464_consen 167 RNDYLFNKSK-ENRNRIKKK-------------------------------------LGIDKDKK-VILYAPTWRDNSSN 207 (369)
T ss_dssp GGHHHHHSTT--HHHHHHHH-------------------------------------TT--SS-E-EEEEE----GGG--
T ss_pred eEhHHhccCH-HHHHHHHHH-------------------------------------hccCCCCc-EEEEeecccccccc
Confidence 122 22222 122222222 23444554 67776556543332
Q ss_pred ------HHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHH-cCC-CcEEE
Q 011690 280 ------GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR-LRL-KRVAF 351 (479)
Q Consensus 280 ------~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~-~~l-~~V~f 351 (479)
...++.-..... ..+++.+++-..- ........ ... ++|.+
T Consensus 208 ~~~~~~~~~~~~~~l~~~---------------------------~~~~~~li~k~Hp----~~~~~~~~~~~~~~~i~~ 256 (369)
T PF04464_consen 208 EYFKFFFSDLDFEKLNFL---------------------------LKNNYVLIIKPHP----NMKKKFKDFKEDNSNIIF 256 (369)
T ss_dssp GGSS----TT-HHHHHHH---------------------------HTTTEEEEE--SH----HHHTT----TT-TTTEEE
T ss_pred ccccccccccCHHHHHHH---------------------------hCCCcEEEEEeCc----hhhhchhhhhccCCcEEE
Confidence 112221111111 1567888886632 11222221 222 67888
Q ss_pred ecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe--cC-------ccchhccccCccEEEeCCHH
Q 011690 352 RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV--SY-------SCIEELVKVDKNGLLFSSSS 422 (479)
Q Consensus 352 ~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas--~~-------~~~~e~i~~~~~G~l~~~~~ 422 (479)
... .+++.+++..||++|. ..++ .++|++.+++|||.. |. |...+ ..+.-.|-++.+.+
T Consensus 257 ~~~---~~~~~~ll~~aDiLIT---DySS-----i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~~~~ 324 (369)
T PF04464_consen 257 VSD---NEDIYDLLAAADILIT---DYSS-----IIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVYNFE 324 (369)
T ss_dssp -TT----S-HHHHHHT-SEEEE---SS-T-----HHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EESSHH
T ss_pred CCC---CCCHHHHHHhcCEEEE---echh-----HHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeCCHH
Confidence 776 6799999999999995 1233 899999999999965 22 11122 23345588889999
Q ss_pred HHHHHHHHHHhc
Q 011690 423 ELADQLLMLFKG 434 (479)
Q Consensus 423 ~la~~l~~l~~~ 434 (479)
+|.++|..++++
T Consensus 325 eL~~~i~~~~~~ 336 (369)
T PF04464_consen 325 ELIEAIENIIEN 336 (369)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHHHhhhhC
Confidence 999999998884
No 132
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.88 E-value=0.0017 Score=68.67 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=103.8
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHH
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 338 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~ 338 (479)
...++|.+.++.|+.... ..+++.+..... .-+.++++...+ .+..
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~----------------------------~l~~~vi~~~~~-~~~~-- 278 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALA----------------------------DLDVRVIVSLGG-ARDT-- 278 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHh----------------------------cCCcEEEEeccc-cccc--
Confidence 346678788888877644 444444333322 224667666643 1111
Q ss_pred HHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccCc
Q 011690 339 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDK 413 (479)
Q Consensus 339 ~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~~ 413 (479)
.-++ .|+...+. +|..+ ++..||++|+. .| .+ ++.|++..|+|+|+-..+. ..+-++.-.
T Consensus 279 ----~~~~p~n~~v~~~-~p~~~---~l~~ad~vI~h----GG--~g-tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G 343 (406)
T COG1819 279 ----LVNVPDNVIVADY-VPQLE---LLPRADAVIHH----GG--AG-TTSEALYAGVPLVVIPDGADQPLNAERVEELG 343 (406)
T ss_pred ----cccCCCceEEecC-CCHHH---HhhhcCEEEec----CC--cc-hHHHHHHcCCCEEEecCCcchhHHHHHHHHcC
Confidence 1234 68888884 88776 89999999973 23 22 7999999999999886443 557777888
Q ss_pred cEEEeC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHh
Q 011690 414 NGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVIS 475 (479)
Q Consensus 414 ~G~l~~----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 475 (479)
+|.... +++.+++++.++++ ++..++..++....++... -.+.+++++++...
T Consensus 344 ~G~~l~~~~l~~~~l~~av~~vL~----~~~~~~~~~~~~~~~~~~~-----g~~~~a~~le~~~~ 400 (406)
T COG1819 344 AGIALPFEELTEERLRAAVNEVLA----DDSYRRAAERLAEEFKEED-----GPAKAADLLEEFAR 400 (406)
T ss_pred CceecCcccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHhhhcc-----cHHHHHHHHHHHHh
Confidence 898773 48899999999999 4665555555444433111 14566777776554
No 133
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.78 E-value=0.0075 Score=61.68 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=136.7
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVT 179 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 179 (479)
.+.+-++.|+-.... ++++.+..+.... =+.||-++-++...+ .+...+++..+ .+...++.-+|++ +
T Consensus 77 ~r~~kff~HGqFn~~-lwlaLl~g~~~~~--k~~WhIWGaDLYe~~---~~~k~rlfy~l-----Rr~aq~rvg~V~a-t 144 (360)
T PF07429_consen 77 DRADKFFLHGQFNPW-LWLALLFGKIKLK--KCYWHIWGADLYEDS---RSLKFRLFYFL-----RRLAQKRVGHVFA-T 144 (360)
T ss_pred CccceEEEeccCcHH-HHHHHHcCCcccc--ceEEEEeCchhhccc---cccchhHHHHH-----HHHHHhhcCeEEE-E
Confidence 788888899843322 2222222222222 335888775554422 12222333323 5555555666654 6
Q ss_pred HHHHHHHHHhhCCe-EEEecCCCCCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccccccc
Q 011690 180 QAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 258 (479)
Q Consensus 180 ~~~~~~l~~~~~~~-~~vi~n~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
+......++.|+.. ...+|- |+..+....... ..
T Consensus 145 ~GDl~~~~q~~~~~~~~~lyf-------Pt~m~~~~~~~~--------------------------------------~~ 179 (360)
T PF07429_consen 145 RGDLAYFQQRYPRVPASLLYF-------PTRMDPALTLSE--------------------------------------KN 179 (360)
T ss_pred cchHHHHHHHcCCCCceEEEc-------CCCCchhhhccc--------------------------------------cc
Confidence 78888888887543 334432 221111000000 00
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEE-EecCC----C
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGP----D 333 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~I-vG~G~----~ 333 (479)
....++..|+-.-+-++..++-.++++++.. ...++++++ .|.|. +
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~-----------------------------~~~~~kIivPLsYg~~n~~Y 230 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQ-----------------------------FGDDVKIIVPLSYGANNQAY 230 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHh-----------------------------cCCCeEEEEECCCCCchHHH
Confidence 1122344555555677778887777777653 245677654 46654 3
Q ss_pred hHHHHHHHHHc-CCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccC
Q 011690 334 KESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 412 (479)
Q Consensus 334 ~~~l~~~~~~~-~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~ 412 (479)
.+++++.++++ +-+++..+...+|-+|+.++++.||++++.+.+. .|+| .+.=.+.+|+||+-+.....-..+...
T Consensus 231 i~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQ--QgiG-nI~lLl~~G~~v~L~~~np~~~~l~~~ 307 (360)
T PF07429_consen 231 IQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQ--QGIG-NICLLLQLGKKVFLSRDNPFWQDLKEQ 307 (360)
T ss_pred HHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechh--hhHh-HHHHHHHcCCeEEEecCChHHHHHHhC
Confidence 34455555554 3257876653499999999999999999986554 4466 578899999999999765554444333
Q ss_pred ccEEEeC-C---HHHHHHHHHHHHh
Q 011690 413 KNGLLFS-S---SSELADQLLMLFK 433 (479)
Q Consensus 413 ~~G~l~~-~---~~~la~~l~~l~~ 433 (479)
.--+++. | ...+.++=.++..
T Consensus 308 ~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 308 GIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred CCeEEeccccCCHHHHHHHHHHHhh
Confidence 2233342 2 3445554444444
No 134
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.77 E-value=0.0028 Score=64.62 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=65.8
Q ss_pred EEEEEecCCChHHHHHHHHHcC-CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 324 LFIITGKGPDKESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~~-l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
-++|.|.---.+..++...... .++|.+.-+ .+++..++..|++.|.- .|. +++-|-++.|||.+....
T Consensus 253 ~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f---~~~~~~ll~gA~~vVSm----~GY---NTvCeILs~~k~aLivPr 322 (400)
T COG4671 253 WLIVTGPFMPEAQRQKLLASAPKRPHISIFEF---RNDFESLLAGARLVVSM----GGY---NTVCEILSFGKPALIVPR 322 (400)
T ss_pred eEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh---hhhHHHHHHhhheeeec----ccc---hhhhHHHhCCCceEEecc
Confidence 3567775432333333333222 378999999 99999999999999953 222 289999999999888764
Q ss_pred ccch-h-cccc---CccEEE---e-C--CHHHHHHHHHHHHhc
Q 011690 403 SCIE-E-LVKV---DKNGLL---F-S--SSSELADQLLMLFKG 434 (479)
Q Consensus 403 ~~~~-e-~i~~---~~~G~l---~-~--~~~~la~~l~~l~~~ 434 (479)
+... | ++.. .+-|++ . + +++.||++|...+..
T Consensus 323 ~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 323 AAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred CCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 4332 2 2221 122433 3 2 388999999988884
No 135
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.61 E-value=0.0099 Score=60.72 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCCCCeEEEEEec-CCCCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHH
Q 011690 260 KPNRPALVVSSTS-WTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 336 (479)
Q Consensus 260 ~~~~~~~i~~~g~-~~~~K~~~--~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~ 336 (479)
.++++.+++..|. +.+.|... ...+.++.+.++ +..+++.|...+++.
T Consensus 171 ~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-----------------------------~~~ivl~G~~~e~~~ 221 (334)
T TIGR02195 171 DTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-----------------------------GYQVVLFGSAKDHPA 221 (334)
T ss_pred CCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-----------------------------CCEEEEEEChhhHHH
Confidence 3456667777665 55666544 666666665431 367888886665555
Q ss_pred HHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 337 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 337 l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
.++..+..+-..+.+.|. .+-.++..+++.||++|.. .+| .+==|-|+|+|+|+--.+.
T Consensus 222 ~~~i~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~~---DSG-----p~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 222 GNEIEALLPGELRNLAGE-TSLDEAVDLIALAKAVVTN---DSG-----LMHVAAALNRPLVALYGST 280 (334)
T ss_pred HHHHHHhCCcccccCCCC-CCHHHHHHHHHhCCEEEee---CCH-----HHHHHHHcCCCEEEEECCC
Confidence 555443332123557887 8899999999999999975 444 2333669999999874333
No 136
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.44 E-value=0.00045 Score=67.98 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhc-------CCcEEEEecCchhhhhh----hh-cCCCc-hh--HHHHHHHhHHHH
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-------RSAFIVDWHNFGYTLLS----LS-LGRRS-HF--VSIYRCFSVLRI 164 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~-------~~~~ii~~h~~~~~~~~----~~-~~~~~-~~--~~~~~~~~~~~~ 164 (479)
.+|||||+|. +.+.++..+++... ++|+++|+|+..|.-.. +. .+-.. .+ .......-..-.
T Consensus 132 ~~pDIIH~hD---W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~ 208 (245)
T PF08323_consen 132 WKPDIIHCHD---WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINF 208 (245)
T ss_dssp -S-SEEEEEC---GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEH
T ss_pred CCCCEEEecC---chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCH
Confidence 4899999999 77777776766654 59999999997542100 00 00000 00 000000000112
Q ss_pred HHHHhhcCCEEEEeCHHHHHHHHHh
Q 011690 165 EKYYGKMANGCLCVTQAMQHELAQN 189 (479)
Q Consensus 165 e~~~~~~ad~vi~vS~~~~~~l~~~ 189 (479)
.+.-...||.|++||+..++++.+.
T Consensus 209 lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 209 LKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp HHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred HHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 3455567999999999999887654
No 137
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.41 E-value=0.27 Score=52.78 Aligned_cols=92 Identities=12% Similarity=0.238 Sum_probs=62.2
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccC-ccEEEeC--
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVD-KNGLLFS-- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~-~~G~l~~-- 419 (479)
+++.+.+ |+|+.+ +|+..++..+. +.+ |. ++++||+++|+|+|+-...+ +...+.+. +.|+-+.
T Consensus 317 ~~~~i~~-W~PQ~~---iL~H~~v~~Fv---tHc-Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~ 387 (449)
T PLN02173 317 DKSLVLK-WSPQLQ---VLSNKAIGCFM---THC-GW-NSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAE 387 (449)
T ss_pred CceEEeC-CCCHHH---HhCCCccceEE---ecC-cc-chHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeec
Confidence 5688887 899776 78887765553 222 22 38999999999999986333 44455443 4566551
Q ss_pred ------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 420 ------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 420 ------~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+.+++++++.+++.+ +..+.+|+++.++
T Consensus 388 ~~~~~~~~e~v~~av~~vm~~-----~~~~~~r~~a~~~ 421 (449)
T PLN02173 388 KESGIAKREEIEFSIKEVMEG-----EKSKEMKENAGKW 421 (449)
T ss_pred ccCCcccHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Confidence 578999999999984 2235566666554
No 138
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.38 E-value=0.3 Score=52.85 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=56.9
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcccc-CccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKV-DKNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~-~~~G~l~--- 418 (479)
.++.+.+ |+|+.+ +|+.+++..+. +. .|. ++++||+++|+|+|+....+ ....+.. -+.|+-+
T Consensus 345 ~g~~v~~-w~PQ~~---iL~h~~v~~fv---tH-~G~-nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 415 (482)
T PLN03007 345 KGLIIRG-WAPQVL---ILDHQATGGFV---TH-CGW-NSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAK 415 (482)
T ss_pred CCEEEec-CCCHHH---HhccCccceee---ec-Ccc-hHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccc
Confidence 5788888 899865 78888774443 21 222 38999999999999986433 2222211 1223221
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 419 ---------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 419 ---------~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
-+.+++++++.+++.+ + ..+.+|+++.+
T Consensus 416 ~~~~~~~~~~~~~~l~~av~~~m~~----~-~~~~~r~~a~~ 452 (482)
T PLN03007 416 KLVKVKGDFISREKVEKAVREVIVG----E-EAEERRLRAKK 452 (482)
T ss_pred cccccccCcccHHHHHHHHHHHhcC----c-HHHHHHHHHHH
Confidence 2478999999999984 2 23445555544
No 139
>PLN00414 glycosyltransferase family protein
Probab=97.35 E-value=0.31 Score=52.25 Aligned_cols=103 Identities=12% Similarity=0.253 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-c
Q 011690 336 SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-K 410 (479)
Q Consensus 336 ~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~ 410 (479)
.+++.++.. ...+.| |+|+.+ +|+...+..+. +. .|. ++++||+++|+|+|+....+ ....+ +
T Consensus 304 ~f~~r~~~~---g~vv~~-w~PQ~~---vL~h~~v~~fv---tH-~G~-nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~ 371 (446)
T PLN00414 304 GFEERVKGR---GIVWEG-WVEQPL---ILSHPSVGCFV---NH-CGF-GSMWESLVSDCQIVFIPQLADQVLITRLLTE 371 (446)
T ss_pred hHHHHhcCC---CeEEec-cCCHHH---HhcCCccceEE---ec-Cch-hHHHHHHHcCCCEEecCcccchHHHHHHHHH
Confidence 444444432 355567 899988 66666443332 21 222 38999999999999986433 34445 3
Q ss_pred cCccEEEeC-------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 411 VDKNGLLFS-------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 411 ~~~~G~l~~-------~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
.-+.|..+. +.+++++++.+++.+ ..+..+.+|+++.+..
T Consensus 372 ~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 372 ELEVSVKVQREDSGWFSKESLRDTVKSVMDK---DSEIGNLVKRNHKKLK 418 (446)
T ss_pred HhCeEEEeccccCCccCHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Confidence 456776662 578999999999974 3356677777777653
No 140
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.33 E-value=0.14 Score=52.87 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=47.2
Q ss_pred CEEEEEEecCCC--hHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEE
Q 011690 322 RLLFIITGKGPD--KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 322 ~~~l~IvG~G~~--~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVI 398 (479)
+..++++|...+ .+..++.++.... ..+.+.|. .+-.++..+++.||++|.. .+| .+==|-|+|+|+|
T Consensus 215 ~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~v~n---DSG-----p~HlAaA~g~P~v 285 (352)
T PRK10422 215 GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGK-TTFPELGALIDHAQLFIGV---DSA-----PAHIAAAVNTPLI 285 (352)
T ss_pred CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCC-CCHHHHHHHHHhCCEEEec---CCH-----HHHHHHHcCCCEE
Confidence 467777774322 2223333333222 34667898 8999999999999999975 444 2333568999999
Q ss_pred EecC
Q 011690 399 AVSY 402 (479)
Q Consensus 399 as~~ 402 (479)
+--.
T Consensus 286 ~lfG 289 (352)
T PRK10422 286 CLFG 289 (352)
T ss_pred EEEC
Confidence 8743
No 141
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.15 E-value=0.49 Score=50.50 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc-chhcccc-CccEEEe--C--CHHHHHHHHH
Q 011690 356 LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-IEELVKV-DKNGLLF--S--SSSELADQLL 429 (479)
Q Consensus 356 ~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~-~~e~i~~-~~~G~l~--~--~~~~la~~l~ 429 (479)
.+..++..++++||++|-. +-. .++=|+++|+|+|+-.+.. ...+++. +-..++. . +.++|.+.+.
T Consensus 316 ~~~~e~~~iIs~~dl~ig~----RlH----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~ 387 (426)
T PRK10017 316 LNDLEMGKILGACELTVGT----RLH----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVA 387 (426)
T ss_pred CChHHHHHHHhhCCEEEEe----cch----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHH
Confidence 4567888999999999963 333 6788999999999987543 2222222 2223333 2 4678999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHh
Q 011690 430 MLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 430 ~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+++++ .++.+++++++..+.
T Consensus 388 ~~~~~---r~~~~~~l~~~v~~~ 407 (426)
T PRK10017 388 DTLGQ---LPALNARLAEAVSRE 407 (426)
T ss_pred HHHhC---HHHHHHHHHHHHHHH
Confidence 99995 345566666666653
No 142
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.11 E-value=0.21 Score=51.14 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=47.9
Q ss_pred CEEEEEEecCCC-h-HHHHHHHHHcCCC-cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEE
Q 011690 322 RLLFIITGKGPD-K-ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 322 ~~~l~IvG~G~~-~-~~l~~~~~~~~l~-~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVI 398 (479)
+..+++.|.... . +..++..+..+-. -+.+.|. .+-.++..+++.||++|.. .+| .+==|-|+|+|+|
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~Vs~---DSG-----p~HlAaA~g~p~v 283 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGK-LTLPQLAALIDHARLFIGV---DSV-----PMHMAAALGTPLV 283 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCC-CCHHHHHHHHHhCCEEEec---CCH-----HHHHHHHcCCCEE
Confidence 467888884322 2 2233333333322 3567888 8899999999999999975 344 2334668999999
Q ss_pred EecCc
Q 011690 399 AVSYS 403 (479)
Q Consensus 399 as~~~ 403 (479)
+--.+
T Consensus 284 ~Lfgp 288 (344)
T TIGR02201 284 ALFGP 288 (344)
T ss_pred EEECC
Confidence 87433
No 143
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.08 E-value=0.092 Score=53.02 Aligned_cols=276 Identities=16% Similarity=0.103 Sum_probs=143.9
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011690 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVL-KPVLLLLKPLIQFFMLLWFLCVKIASP 102 (479)
Q Consensus 24 ~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~l~~~~~~~ 102 (479)
....|.++ ||+|.|.|....... +..+.-|+....+... +...+. +.+....+.. .+.++.. ..+|
T Consensus 19 lI~elekk-G~ev~iT~rd~~~v~-~LLd~ygf~~~~Igk~-----g~~tl~~Kl~~~~eR~~-----~L~ki~~-~~kp 85 (346)
T COG1817 19 LIWELEKK-GHEVLITCRDFGVVT-ELLDLYGFPYKSIGKH-----GGVTLKEKLLESAERVY-----KLSKIIA-EFKP 85 (346)
T ss_pred HHHHHHhC-CeEEEEEEeecCcHH-HHHHHhCCCeEeeccc-----CCccHHHHHHHHHHHHH-----HHHHHHh-hcCC
Confidence 35677776 999999987665433 4555567777777611 111111 2222111111 1111221 2799
Q ss_pred cEEEE-eCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHH
Q 011690 103 DVFLV-QNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQA 181 (479)
Q Consensus 103 DvI~~-~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 181 (479)
|+.+. |||. +. -..+..|+|.|+-..+- .+. .- +++....||.+++.+..
T Consensus 86 dv~i~~~s~~------l~-rvafgLg~psIi~~D~e-hA~----------------~q-----nkl~~Pla~~ii~P~~~ 136 (346)
T COG1817 86 DVAIGKHSPE------LP-RVAFGLGIPSIIFVDNE-HAE----------------AQ-----NKLTLPLADVIITPEAI 136 (346)
T ss_pred ceEeecCCcc------hh-hHHhhcCCceEEecCCh-hHH----------------HH-----hhcchhhhhheeccccc
Confidence 98654 5532 12 23445688887733221 111 01 45666778887766655
Q ss_pred HHHHHHHhhCCe--EEEecCCC-----CCCCCCCChHHHHHHHHhhhhcccCCCCccccccccccCCcccccchhccccc
Q 011690 182 MQHELAQNWGIK--ATVLYDQP-----PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 254 (479)
Q Consensus 182 ~~~~l~~~~~~~--~~vi~n~~-----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (479)
....+... |.+ -.+-+||. ...|.|.+ +.+.++
T Consensus 137 ~~~~~~~~-G~~p~~i~~~~giae~~~v~~f~pd~-----evlkeL---------------------------------- 176 (346)
T COG1817 137 DEEELLDF-GADPNKISGYNGIAELANVYGFVPDP-----EVLKEL---------------------------------- 176 (346)
T ss_pred chHHHHHh-CCCccceecccceeEEeecccCCCCH-----HHHHHc----------------------------------
Confidence 55555444 655 33446662 12366655 233333
Q ss_pred cccccCCCCCeEEEE-----EecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEe
Q 011690 255 IDVFLKPNRPALVVS-----STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG 329 (479)
Q Consensus 255 ~~~~~~~~~~~~i~~-----~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG 329 (479)
++.++.+.+++= +.-...+++.+.+.++++.+.+ ++ .++|--
T Consensus 177 ---gl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k----------------------------~g--iV~ipr 223 (346)
T COG1817 177 ---GLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK----------------------------YG--IVLIPR 223 (346)
T ss_pred ---CCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh----------------------------Cc--EEEecC
Confidence 455555533332 1123345677778888888765 33 222222
Q ss_pred cCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc---cch
Q 011690 330 KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS---CIE 406 (479)
Q Consensus 330 ~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~---~~~ 406 (479)
.++ .++..+. ..+++..-. ..|-..++--|++++-- | ++-.-||...|+|.|.+.-| +..
T Consensus 224 ~~~----~~eife~--~~n~i~pk~---~vD~l~Llyya~lvig~-----g---gTMarEaAlLGtpaIs~~pGkll~vd 286 (346)
T COG1817 224 EKE----QAEIFEG--YRNIIIPKK---AVDTLSLLYYATLVIGA-----G---GTMAREAALLGTPAISCYPGKLLAVD 286 (346)
T ss_pred chh----HHHHHhh--hccccCCcc---cccHHHHHhhhheeecC-----C---chHHHHHHHhCCceEEecCCcccccc
Confidence 222 2223332 233332222 44545588888998842 2 23568999999999999844 333
Q ss_pred hccccCccEEEeC--CHHHHHHHHHHHHh
Q 011690 407 ELVKVDKNGLLFS--SSSELADQLLMLFK 433 (479)
Q Consensus 407 e~i~~~~~G~l~~--~~~~la~~l~~l~~ 433 (479)
+... +.|.++. |+.+..+...+++.
T Consensus 287 k~li--e~G~~~~s~~~~~~~~~a~~~l~ 313 (346)
T COG1817 287 KYLI--EKGLLYHSTDEIAIVEYAVRNLK 313 (346)
T ss_pred HHHH--hcCceeecCCHHHHHHHHHHHhh
Confidence 4442 3577773 45555555555555
No 144
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.06 E-value=2.2e-05 Score=72.08 Aligned_cols=88 Identities=17% Similarity=0.322 Sum_probs=59.2
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc--------chhccccCccEEEe
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--------IEELVKVDKNGLLF 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~--------~~e~i~~~~~G~l~ 418 (479)
.+|.+.++ .+++.++++.||++|+ ..| +.++.|++++|+|.|...... ....+.....|...
T Consensus 55 ~~v~~~~~---~~~m~~~m~~aDlvIs----~aG---~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~ 124 (167)
T PF04101_consen 55 PNVKVFGF---VDNMAELMAAADLVIS----HAG---AGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML 124 (167)
T ss_dssp CCCEEECS---SSSHHHHHHHHSEEEE----CS----CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS
T ss_pred CcEEEEec---hhhHHHHHHHcCEEEe----CCC---ccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc
Confidence 67999998 7789999999999996 222 238999999999988876555 33334444445555
Q ss_pred C----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011690 419 S----SSSELADQLLMLFKGFPDDSDVLKKLRNG 448 (479)
Q Consensus 419 ~----~~~~la~~l~~l~~~~~~~~~~~~~~~~~ 448 (479)
. +++.|.++|..+++ ++..+..+.+.
T Consensus 125 ~~~~~~~~~L~~~i~~l~~----~~~~~~~~~~~ 154 (167)
T PF04101_consen 125 DESELNPEELAEAIEELLS----DPEKLKEMAKA 154 (167)
T ss_dssp ECCC-SCCCHHHHHHCHCC----CHH-SHHHCCC
T ss_pred CcccCCHHHHHHHHHHHHc----CcHHHHHHHHH
Confidence 2 26779999999988 46555555443
No 145
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.06 E-value=0.085 Score=54.29 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCC---Cc-EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRL---KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l---~~-V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
++.++++|...+++..++.++...- .+ +.+.|. .+-.++..+++.||++|.. .+| .+==|-|.|+|+
T Consensus 213 ~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~n---DTG-----p~HlAaA~g~P~ 283 (348)
T PRK10916 213 GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGE-TQLEQAVILIAACKAIVTN---DSG-----LMHVAAALNRPL 283 (348)
T ss_pred CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCC-CCHHHHHHHHHhCCEEEec---CCh-----HHHHHHHhCCCE
Confidence 4678888865555555555444321 12 567787 8899999999999999975 444 233366899999
Q ss_pred EEecC
Q 011690 398 CAVSY 402 (479)
Q Consensus 398 Ias~~ 402 (479)
|+--.
T Consensus 284 valfG 288 (348)
T PRK10916 284 VALYG 288 (348)
T ss_pred EEEEC
Confidence 98643
No 146
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.06 E-value=0.0078 Score=62.33 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=59.5
Q ss_pred CeEEEEEecCC--CCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHH
Q 011690 264 PALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 341 (479)
Q Consensus 264 ~~~i~~~g~~~--~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~ 341 (479)
+.+.+..|+=. -.+.+..+++|+..+.++ . ..+++.|... .+.+++..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~---------------------------~--~~~~i~~a~~-~~~i~~~~ 217 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGK---------------------------E--KILVVPSFFK-GKDLKEIY 217 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhc---------------------------C--cEEEEeCCCc-HHHHHHHH
Confidence 55666666532 235566777888877653 2 6788887643 35555544
Q ss_pred HHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec
Q 011690 342 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 342 ~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~ 401 (479)
.+. ..+.+.+ +..+++++||+.++. +| ++.+|++.+|+|.|...
T Consensus 218 ~~~--~~~~~~~------~~~~~m~~aDlal~~----SG----T~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 218 GDI--SEFEISY------DTHKALLEAEFAFIC----SG----TATLEAALIGTPFVLAY 261 (347)
T ss_pred hcC--CCcEEec------cHHHHHHhhhHHHhc----Cc----HHHHHHHHhCCCEEEEE
Confidence 332 2344432 456899999999974 33 37779999999977654
No 147
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.17 Score=52.05 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCeEEEEEe-cCCCCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHH
Q 011690 263 RPALVVSST-SWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 339 (479)
Q Consensus 263 ~~~~i~~~g-~~~~~K~~~--~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~ 339 (479)
+|.++++.| +....|... ...+.+..+.++ . +.+++.|...+.+..++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~---------------------------~--~~Vvl~g~~~e~e~~~~ 225 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK---------------------------G--YQVVLFGGPDEEERAEE 225 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC---------------------------C--CEEEEecChHHHHHHHH
Confidence 466777777 666666544 555666666543 3 78889997755555555
Q ss_pred HHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 340 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 340 ~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
..+... ..+.+.|. .+-+++..+++.||++|.+ .+| .+==|-|.|+|+|+--.+.
T Consensus 226 i~~~~~-~~~~l~~k-~sL~e~~~li~~a~l~I~~---DSg-----~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 226 IAKGLP-NAVILAGK-TSLEELAALIAGADLVIGN---DSG-----PMHLAAALGTPTIALYGPT 280 (334)
T ss_pred HHHhcC-CccccCCC-CCHHHHHHHHhcCCEEEcc---CCh-----HHHHHHHcCCCEEEEECCC
Confidence 555543 22338888 8999999999999999976 455 2334678999999986443
No 148
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.90 E-value=0.21 Score=50.56 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCCeEEEEEecCCCCCCH--HHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCCh-HHHH
Q 011690 262 NRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYE 338 (479)
Q Consensus 262 ~~~~~i~~~g~~~~~K~~--~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~-~~l~ 338 (479)
+++.+++..|.=.+.|.. +...+.+..+.++ +..++++|.|+.. +..+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~-----------------------------~~~~vl~~g~~~e~~~~~ 228 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLAR-----------------------------GLQIVLPWGNDAEKQRAE 228 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC-----------------------------CCeEEEeCCCHHHHHHHH
Confidence 345566666643466655 4566666665431 4677777655543 3344
Q ss_pred HHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 339 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 339 ~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
+..+. .++..+.|. .+-.+...+++.||++|.. .+| .+==|-|+|+|+|+--.
T Consensus 229 ~i~~~--~~~~~l~g~-~sL~el~ali~~a~l~I~~---DSg-----p~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 229 RIAEA--LPGAVVLPK-MSLAEVAALLAGADAVVGV---DTG-----LTHLAAALDKPTVTLYG 281 (319)
T ss_pred HHHhh--CCCCeecCC-CCHHHHHHHHHcCCEEEeC---CCh-----HHHHHHHcCCCEEEEEC
Confidence 43332 334467787 8899999999999999975 444 22335588999998643
No 149
>PLN02562 UDP-glycosyltransferase
Probab=96.69 E-value=1.2 Score=47.84 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=55.1
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcccc-CccEEEe--C
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKV-DKNGLLF--S 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~-~~~G~l~--~ 419 (479)
+|+.+.+ |+|+.+ +|+..++..+. +. .|. .+++||+.+|+|+|+....+ ....+.+ -+.|+-+ -
T Consensus 328 ~~~~v~~-w~PQ~~---iL~h~~v~~fv---tH-~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~ 398 (448)
T PLN02562 328 KQGKVVS-WAPQLE---VLKHQAVGCYL---TH-CGW-NSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGF 398 (448)
T ss_pred cCEEEEe-cCCHHH---HhCCCccceEE---ec-Ccc-hhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCC
Confidence 5777777 899888 67677764443 22 223 38999999999999986433 4444433 3567666 3
Q ss_pred CHHHHHHHHHHHHhc
Q 011690 420 SSSELADQLLMLFKG 434 (479)
Q Consensus 420 ~~~~la~~l~~l~~~ 434 (479)
+.+++++++.+++.+
T Consensus 399 ~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 399 GQKEVEEGLRKVMED 413 (448)
T ss_pred CHHHHHHHHHHHhCC
Confidence 578999999999973
No 150
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.037 Score=58.02 Aligned_cols=95 Identities=25% Similarity=0.323 Sum_probs=66.0
Q ss_pred HHHHHHHHcCC-----C--cEEEecCCCC------cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 SYEEKIRRLRL-----K--RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 ~l~~~~~~~~l-----~--~V~f~G~~~~------~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+...+++.++ + .|+|...+++ .-|+.++.+.|+++|+| |..|..|-+-.|.-.||+|-|.|+.
T Consensus 456 piL~~iRr~~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFP---SYYEPWGYTPAECTVMGiPSvtTNl 532 (692)
T KOG3742|consen 456 PILSSIRRIGLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFP---SYYEPWGYTPAECTVMGIPSVTTNL 532 (692)
T ss_pred hHHHHhHhhhcccCcccceEEEecHHHhccCCCCcCCCHHHHhccccccccc---cccCCCCCCchheEEeccccccccc
Confidence 34455666554 2 3566544333 34899999999999999 7778888899999999999999997
Q ss_pred ccc----hhccccCc-cEEEe-----CC----HHHHHHHHHHHHh
Q 011690 403 SCI----EELVKVDK-NGLLF-----SS----SSELADQLLMLFK 433 (479)
Q Consensus 403 ~~~----~e~i~~~~-~G~l~-----~~----~~~la~~l~~l~~ 433 (479)
+|+ +|.|++.. .|+.+ .+ +++|++-|...-+
T Consensus 533 SGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F~~ 577 (692)
T KOG3742|consen 533 SGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEFCK 577 (692)
T ss_pred cchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHHHH
Confidence 774 56665543 36654 23 4556665555544
No 151
>PLN02764 glycosyltransferase family protein
Probab=96.52 E-value=0.073 Score=57.14 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEe----
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLF---- 418 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~---- 418 (479)
.+...+ |+|+.+ +|+...+..+. +.+ |. .+++||+.+|+|+|+....+ ....+ +.-..|+-+
T Consensus 318 G~v~~~-W~PQ~~---vL~h~~v~~Fv---tH~-G~-nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~ 388 (453)
T PLN02764 318 GVVWGG-WVQQPL---ILSHPSVGCFV---SHC-GF-GSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE 388 (453)
T ss_pred CcEEeC-CCCHHH---HhcCcccCeEE---ecC-Cc-hHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc
Confidence 355667 899988 56665553332 222 22 28999999999999987444 33444 334566654
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 419 ---SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 419 ---~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
-+.+++++++.+++.+ ..+..+++|+++.+++
T Consensus 389 ~~~~~~e~i~~av~~vm~~---~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 389 TGWFSKESLRDAINSVMKR---DSEIGNLVKKNHTKWR 423 (453)
T ss_pred CCccCHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 1578999999999984 2355677777777653
No 152
>PLN02670 transferase, transferring glycosyl groups
Probab=96.45 E-value=0.099 Score=56.45 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=71.1
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccCccEEEeC-----
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS----- 419 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~~~G~l~~----- 419 (479)
+.+.+ |+|+.+ +|+..++..+. +. .|. ++++||+++|+|+|+....+ ....+..-+.|+.+.
T Consensus 341 ~vv~~-W~PQ~~---IL~H~~v~~Fv---tH-cGw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~ 411 (472)
T PLN02670 341 MIHVG-WVPQVK---ILSHESVGGFL---TH-CGW-NSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERD 411 (472)
T ss_pred eEEeC-cCCHHH---HhcCcccceee---ec-CCc-chHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccC
Confidence 66667 899888 67777774443 22 222 38999999999999986333 445555567787762
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 011690 420 ---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 473 (479)
Q Consensus 420 ---~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 473 (479)
+.+++++++.+++.+ +..+++|+++.+.....+-...-++++..++..+
T Consensus 412 ~~~~~e~i~~av~~vm~~-----~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l 463 (472)
T PLN02670 412 GSFTSDSVAESVRLAMVD-----DAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYL 463 (472)
T ss_pred CcCcHHHHHHHHHHHhcC-----cchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 378999999999984 2234566666665433433334444444444443
No 153
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=1.1 Score=44.53 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=67.3
Q ss_pred CCCCCeEEEEEecCCCCCCH--HHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHH
Q 011690 260 KPNRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 337 (479)
Q Consensus 260 ~~~~~~~i~~~g~~~~~K~~--~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l 337 (479)
+..++.+.|.+|.=.+.-.+ +.+.+....+.+-+. ...+.|.+.-.-...+..
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~-------------------------~~g~~~lisfSRRTp~~~ 212 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILE-------------------------NQGGSFLISFSRRTPDTV 212 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHH-------------------------hCCceEEEEeecCCcHHH
Confidence 34456677777765443333 344444444443311 235778877766556677
Q ss_pred HHHHHH-cCCCcEEEecC-CCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 338 EEKIRR-LRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 338 ~~~~~~-~~l~~V~f~G~-~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
+..++. ++-.-..+... --..+-+.++|++||.++.. ..|-. -.-||.+.|+||-+--.
T Consensus 213 ~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~T-aDSin-----M~sEAasTgkPv~~~~~ 273 (329)
T COG3660 213 KSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIIST-ADSIN-----MCSEAASTGKPVFILEP 273 (329)
T ss_pred HHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEe-cchhh-----hhHHHhccCCCeEEEec
Confidence 776665 33334555433 01345699999999999975 12222 36899999999977643
No 154
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.41 E-value=0.096 Score=48.84 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=79.5
Q ss_pred CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCC
Q 011690 32 MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPP 111 (479)
Q Consensus 32 ~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~ 111 (479)
.||+|..+|....... .+||+++++.....+........+.+..-...-......+..|..+-..||+|+.|.-+
T Consensus 2 ~gh~v~fl~~~~~~~~-----~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GW 76 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPI-----PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGW 76 (171)
T ss_pred CCCEEEEEecCCCCCC-----CCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc
Confidence 3999999994333222 16999998873111111111111111111111222333444555555689999999832
Q ss_pred CcchHHHHHHHHHh-cCCcEEEEecCchhhhhhhh--cCCC--chhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHHHHHH
Q 011690 112 SVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLS--LGRR--SHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAMQHEL 186 (479)
Q Consensus 112 ~~~~~~~~~~~~~~-~~~~~ii~~h~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l 186 (479)
. - +.+++-. -++|+|.- ..+.|..-+.. +... .......+.-...-..-.-...||..++-|+..++.+
T Consensus 77 G--e---~Lflkdv~P~a~li~Y-~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~f 150 (171)
T PF12000_consen 77 G--E---TLFLKDVFPDAPLIGY-FEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQF 150 (171)
T ss_pred c--h---hhhHHHhCCCCcEEEE-EEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhC
Confidence 1 1 1233433 47887662 11111110000 0000 0111111100000012233346999999999988877
Q ss_pred HHhhCCeEEEecCC-CCCCC
Q 011690 187 AQNWGIKATVLYDQ-PPEFF 205 (479)
Q Consensus 187 ~~~~~~~~~vi~n~-~~~~f 205 (479)
=..+.-++.||++| |++.+
T Consensus 151 P~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 151 PAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred CHHHHcCcEEeecccchhhc
Confidence 66666679999999 66544
No 155
>PLN00164 glucosyltransferase; Provisional
Probab=96.11 E-value=0.25 Score=53.54 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=62.4
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEeC---
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLFS--- 419 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~~--- 419 (479)
.+.+.+ |+|+.+ +|+..++..+. + ..|.. +++||+++|+|+|+-...+ ....+ +.-+.|+.+.
T Consensus 340 g~~v~~-w~PQ~~---iL~h~~vg~fv---t-H~Gwn-S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~ 410 (480)
T PLN00164 340 GLVWPT-WAPQKE---ILAHAAVGGFV---T-HCGWN-SVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR 410 (480)
T ss_pred CeEEee-cCCHHH---HhcCcccCeEE---e-ecccc-hHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccc
Confidence 366666 798887 77788865443 2 22232 8999999999999986333 33333 4446677652
Q ss_pred ------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 420 ------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 420 ------~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+++++++.+++.+ ..++.+.+|+++.+++
T Consensus 411 ~~~~~~~~e~l~~av~~vm~~---~~~~~~~~r~~a~~~~ 447 (480)
T PLN00164 411 KRDNFVEAAELERAVRSLMGG---GEEEGRKAREKAAEMK 447 (480)
T ss_pred ccCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 468999999999974 1224566777766654
No 156
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=95.85 E-value=0.23 Score=53.39 Aligned_cols=141 Identities=13% Similarity=-0.038 Sum_probs=71.6
Q ss_pred cEEEEecCC-----C---CCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHhh-cCCCcE
Q 011690 35 EVDVVAYGG-----S---KPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL-WFLCVK-IASPDV 104 (479)
Q Consensus 35 eV~Vv~~~~-----~---~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~l~~~-~~~~Dv 104 (479)
+|.|+|.-- + ++...+....+.+|.|+|..+... ..++.. ....++.++..+..-. ..+... ..+||+
T Consensus 327 ~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~g-i~~kwi-srf~lWPyLe~fa~d~~~~i~~e~~~~Pdl 404 (550)
T PF00862_consen 327 KIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKG-ILRKWI-SRFDLWPYLEEFADDAEREILAELQGKPDL 404 (550)
T ss_dssp EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTE-EE-S----GGG-GGGHHHHHHHHHHHHHHHHTS--SE
T ss_pred ceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcc-hhhhcc-chhhchhhHHHHHHHHHHHHHHHhCCCCcE
Confidence 388888521 1 122233345689999999543210 011110 0012223333322111 122211 268999
Q ss_pred EEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCH
Q 011690 105 FLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQ 180 (479)
Q Consensus 105 I~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 180 (479)
||.|. ..+..++.+++...|+|...+-|..+-+-+..+--.+..+-..++.-.+.-.|...++.||.||+-|.
T Consensus 405 I~GnY---sDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~ 477 (550)
T PF00862_consen 405 IIGNY---SDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTY 477 (550)
T ss_dssp EEEEH---HHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSH
T ss_pred EEecc---CcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcch
Confidence 99998 77778888888999999999999987332221111122233333333334557788899999998765
No 157
>PLN03004 UDP-glycosyltransferase
Probab=95.65 E-value=0.24 Score=53.18 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=56.9
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccc-cCccEEEeC--
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVK-VDKNGLLFS-- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~-~~~~G~l~~-- 419 (479)
.++.+.+ |+|+.+ +|+.+++..+. +.+ |+ ++++||+++|+|+|+....+ ....+. .-+.|+.+.
T Consensus 334 ~g~~v~~-W~PQ~~---iL~H~~v~~Fv---TH~-G~-nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~ 404 (451)
T PLN03004 334 KGMVVKS-WAPQVP---VLNHKAVGGFV---THC-GW-NSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNES 404 (451)
T ss_pred CcEEEEe-eCCHHH---HhCCCccceEe---ccC-cc-hHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCC
Confidence 5688878 899988 78889985543 222 22 38999999999999986333 444453 336777662
Q ss_pred -----CHHHHHHHHHHHHhc
Q 011690 420 -----SSSELADQLLMLFKG 434 (479)
Q Consensus 420 -----~~~~la~~l~~l~~~ 434 (479)
+.+++++++.+++.+
T Consensus 405 ~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 405 ETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred cCCccCHHHHHHHHHHHhcC
Confidence 578999999999983
No 158
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=95.65 E-value=0.14 Score=55.10 Aligned_cols=79 Identities=19% Similarity=0.356 Sum_probs=51.1
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccCccEEEeC---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS--- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~~~G~l~~--- 419 (479)
+|+.+.. |+|+.+ +|+...+.++- +.| |+ ..+.||+.+|+|+|+-..-+ ....++....|...+
T Consensus 323 ~n~~~~~-W~PQ~~---lL~hp~v~~fi---tHg-G~-~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 393 (500)
T PF00201_consen 323 KNVLIVK-WLPQND---LLAHPRVKLFI---THG-GL-NSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKND 393 (500)
T ss_dssp TTEEEES-S--HHH---HHTSTTEEEEE---ES---H-HHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC
T ss_pred ceEEEec-cccchh---hhhcccceeee---ecc-cc-chhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecC
Confidence 5787776 899876 57666554432 222 22 48999999999999997433 445566666787773
Q ss_pred -CHHHHHHHHHHHHhc
Q 011690 420 -SSSELADQLLMLFKG 434 (479)
Q Consensus 420 -~~~~la~~l~~l~~~ 434 (479)
+.+++.++|.+++++
T Consensus 394 ~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 394 LTEEELRAAIREVLEN 409 (500)
T ss_dssp -SHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhh
Confidence 378999999999994
No 159
>PLN02167 UDP-glycosyltransferase family protein
Probab=95.60 E-value=0.19 Score=54.34 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=51.3
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chh-ccccCccEEEeC---
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEE-LVKVDKNGLLFS--- 419 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e-~i~~~~~G~l~~--- 419 (479)
+..+.+ |+|+.+ +|+...+..+. + ..|.. +++||+++|+|+|+-...+ ... +++.-+.|+.+.
T Consensus 341 rg~v~~-w~PQ~~---iL~h~~vg~fv---t-H~G~n-S~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~ 411 (475)
T PLN02167 341 RGLVCG-WAPQVE---ILAHKAIGGFV---S-HCGWN-SVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDY 411 (475)
T ss_pred Ceeeec-cCCHHH---HhcCcccCeEE---e-eCCcc-cHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccc
Confidence 345566 898887 67665553332 2 12222 7899999999999986333 222 344445676551
Q ss_pred --------CHHHHHHHHHHHHhc
Q 011690 420 --------SSSELADQLLMLFKG 434 (479)
Q Consensus 420 --------~~~~la~~l~~l~~~ 434 (479)
+.+++++++.+++.+
T Consensus 412 ~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 412 VSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccccCCcccHHHHHHHHHHHhcC
Confidence 467999999999974
No 160
>PLN02210 UDP-glucosyl transferase
Probab=95.59 E-value=0.26 Score=53.04 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=59.3
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcccc-CccEEEeC---
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKV-DKNGLLFS--- 419 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~-~~~G~l~~--- 419 (479)
+..+.+ |+|+.+ +|+.++++.+. + ..|.. +++||+.+|+|+|+-...+ ....+.+ -+.|+.+.
T Consensus 325 ~g~v~~-w~PQ~~---iL~h~~vg~Fi---t-H~G~n-S~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~ 395 (456)
T PLN02210 325 QGVVLE-WSPQEK---ILSHMAISCFV---T-HCGWN-STIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDA 395 (456)
T ss_pred CeEEEe-cCCHHH---HhcCcCcCeEE---e-eCCcc-cHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccc
Confidence 344556 899986 78888754443 2 12232 7899999999999986443 3344443 46777662
Q ss_pred -----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 420 -----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 420 -----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+.+++++++.+++.+ + ..+++|+++.++
T Consensus 396 ~~~~~~~~~l~~av~~~m~~----~-~g~~~r~~a~~l 428 (456)
T PLN02210 396 VDGELKVEEVERCIEAVTEG----P-AAADIRRRAAEL 428 (456)
T ss_pred cCCcCCHHHHHHHHHHHhcC----c-hHHHHHHHHHHH
Confidence 468999999999974 2 234455555543
No 161
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.56 E-value=2.4 Score=43.32 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=53.6
Q ss_pred EEEEEEecCCChHHHHHHHHHcC--CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 323 LLFIITGKGPDKESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~~--l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
..+.|+..--..++.++..+++- ...+.+... -+.+-+..+|+.||.+++. ..| .+ =+.||.+.|+||-.-
T Consensus 183 ~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~-~~~nPy~~~La~ad~i~VT-~DS----vS-MvsEA~~tG~pV~v~ 255 (311)
T PF06258_consen 183 GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDG-TGENPYLGFLAAADAIVVT-EDS----VS-MVSEAAATGKPVYVL 255 (311)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecC-CCCCcHHHHHHhCCEEEEc-Ccc----HH-HHHHHHHcCCCEEEe
Confidence 88999987655566666655542 356745444 3555699999999999985 222 22 489999999999888
Q ss_pred cCcc
Q 011690 401 SYSC 404 (479)
Q Consensus 401 ~~~~ 404 (479)
...+
T Consensus 256 ~l~~ 259 (311)
T PF06258_consen 256 PLPG 259 (311)
T ss_pred cCCC
Confidence 7554
No 162
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.48 E-value=0.28 Score=52.67 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=60.4
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccC-ccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVD-KNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~-~~G~l~--- 418 (479)
+|....+ |+|+.+ +|+..++..+. + ..|. ++++||+++|+|+|+....+ +...+.+. +.|+-+
T Consensus 324 ~~g~v~~-w~PQ~~---iL~h~~v~~fv---t-H~G~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 394 (451)
T PLN02410 324 GRGYIVK-WAPQKE---VLSHPAVGGFW---S-HCGW-NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGD 394 (451)
T ss_pred CCeEEEc-cCCHHH---HhCCCccCeee---e-cCch-hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCc
Confidence 5666666 899988 66666664332 2 1223 38999999999999986433 33444333 577776
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 419 SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 419 ~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
-+.+++++++.+++.+ ++ .+.+++++.++
T Consensus 395 ~~~~~v~~av~~lm~~----~~-~~~~r~~a~~l 423 (451)
T PLN02410 395 LDRGAVERAVKRLMVE----EE-GEEMRKRAISL 423 (451)
T ss_pred ccHHHHHHHHHHHHcC----Cc-HHHHHHHHHHH
Confidence 2478999999999984 22 34455555543
No 163
>PLN02534 UDP-glycosyltransferase
Probab=95.38 E-value=5.2 Score=43.54 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=67.9
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~--- 418 (479)
.++.+.| |+|+.+ +|+..++..+. + ..|. +.++||+++|+|+|+-...+ ....+ +.-+.|+-+
T Consensus 344 ~g~~v~~-w~pq~~---iL~h~~v~~fv---t-H~G~-ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~ 414 (491)
T PLN02534 344 RGLLIKG-WAPQVL---ILSHPAIGGFL---T-HCGW-NSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVE 414 (491)
T ss_pred CCeeccC-CCCHHH---HhcCCccceEE---e-cCcc-HHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccc
Confidence 4677777 899855 77778875443 2 1222 38999999999999987433 21122 121223322
Q ss_pred --------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhh--hchH---HHHHHHHHHHHHHHHhh
Q 011690 419 --------------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS--ARWA---TEWEEHAKPLITEVISQ 476 (479)
Q Consensus 419 --------------~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~w~---~~~~~~~~~~~~~~~~~ 476 (479)
-+.+++++++.+++.+ +.++.+.+|+++.+++.. ..+. .++ +.+..+++++..|
T Consensus 415 ~~~~~~~~~~~~~~v~~eev~~~v~~~m~~---~~eeg~~~R~rA~elk~~a~~Av~~GGSS~-~nl~~fv~~i~~~ 487 (491)
T PLN02534 415 VPVRWGDEERVGVLVKKDEVEKAVKTLMDD---GGEEGERRRRRAQELGVMARKAMELGGSSH-INLSILIQDVLKQ 487 (491)
T ss_pred ccccccccccccCccCHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHH
Confidence 2468999999999962 123345566666654311 1111 123 3456666666655
No 164
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=95.37 E-value=3.4 Score=41.38 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 332 PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 332 ~~~~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+.+..++....+.- ..| ... .+.+++..++++||++|. .+-. .++=|+.+|+|+++-+.
T Consensus 217 ~D~~~~~~l~~~~~~~~~i--~~~-~~~~e~~~~i~~~~~vI~----~RlH----~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 217 QDLPLARALRDQLLGPAEV--LSP-LDPEELLGLFASARLVIG----MRLH----ALILAAAAGVPFVALSY 277 (298)
T ss_pred hhHHHHHHHHHhcCCCcEE--Eec-CCHHHHHHHHhhCCEEEE----echH----HHHHHHHcCCCEEEeec
Confidence 344444444444322 233 344 678899999999999985 2333 67899999999998754
No 165
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.23 Score=55.84 Aligned_cols=135 Identities=16% Similarity=0.108 Sum_probs=96.1
Q ss_pred CCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CCh-----
Q 011690 261 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDK----- 334 (479)
Q Consensus 261 ~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~----- 334 (479)
|+. ++++.+-|+++.|.....+.=+..+.+. |.+ ...|.+.+++.|+- |.-
T Consensus 485 p~~-lfd~~~kRiheYKRq~Lnl~~i~~ly~~-------------------i~~---d~~prv~~iFaGKAhP~y~~aK~ 541 (750)
T COG0058 485 PNA-LFDGQARRIHEYKRQLLNLLDIERLYRI-------------------LKE---DWVPRVQIIFAGKAHPADYAAKE 541 (750)
T ss_pred CCc-ceeeeehhhhhhhhhHHhHhhHHHHHHH-------------------Hhc---CCCCceEEEEeccCCCcchHHHH
Confidence 444 5899999999999877766555444433 111 23677888999974 221
Q ss_pred --HHHHHHHHHcCC-CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccc-
Q 011690 335 --ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK- 410 (479)
Q Consensus 335 --~~l~~~~~~~~l-~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~- 410 (479)
..+.+.++..+. .+|.|+.. .+..-...++.+||+-..-++. .-|.-|+.=.=+|..|.+-|+|--|..-|+.+
T Consensus 542 iIk~I~~~a~~in~~lkVvFl~n-YdvslA~~iipa~Dvweqis~a-~~EASGTsnMK~alNGaltigtlDGanvEi~e~ 619 (750)
T COG0058 542 IIKLINDVADVINNKLKVVFLPN-YDVSLAELLIPAADVWEQIPTA-GKEASGTSNMKAALNGALTLGTLDGANVEIYEH 619 (750)
T ss_pred HHHHHHHHHHhhcccceEEEeCC-CChhHHHhhcccccccccCCCC-CccccCcCcchHHhcCCceeeccccHHHHHHHh
Confidence 122333444343 46889887 7788888899999999875444 33455556677899999999999999999997
Q ss_pred -cCccEEEeCC
Q 011690 411 -VDKNGLLFSS 420 (479)
Q Consensus 411 -~~~~G~l~~~ 420 (479)
.+.||+++++
T Consensus 620 vg~~N~~~fG~ 630 (750)
T COG0058 620 VGGENGWIFGE 630 (750)
T ss_pred cCCCceEEeCC
Confidence 8999999954
No 166
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.89 E-value=0.16 Score=50.47 Aligned_cols=76 Identities=25% Similarity=0.193 Sum_probs=54.2
Q ss_pred CEEEEEEecCCChHHHHHHHHHcC-CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~-l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
+.++++.|...+.+..++..+..+ .+.+.+.|. .+-.++..+++.||++|.+ .+| .+-=|.++|+|+|+-
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~-~~l~e~~~li~~~~l~I~~---Dsg-----~~HlA~a~~~p~i~l 223 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGK-TSLRELAALLARADLVVTN---DSG-----PMHLAAALGTPTVAL 223 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCC-CCHHHHHHHHHhCCEEEee---CCH-----HHHHHHHcCCCEEEE
Confidence 678889987666666666555442 244667787 7889999999999999975 344 344456999999987
Q ss_pred cCccch
Q 011690 401 SYSCIE 406 (479)
Q Consensus 401 ~~~~~~ 406 (479)
-.+..+
T Consensus 224 ~g~~~~ 229 (279)
T cd03789 224 FGPTDP 229 (279)
T ss_pred ECCCCc
Confidence 544443
No 167
>PLN02555 limonoid glucosyltransferase
Probab=94.81 E-value=0.81 Score=49.58 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=59.9
Q ss_pred CcEEEecCCCCcchHHHHHH--cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccC-ccEEEeC
Q 011690 347 KRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVD-KNGLLFS 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~--~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~-~~G~l~~ 419 (479)
+++.+.+ |+|+.+ +|+ +..+||. . .|. .+++||+.+|+|+|+....+ ....+.+. +.|+-+.
T Consensus 337 ~~g~v~~-W~PQ~~---iL~H~~v~~Fvt-----H-~G~-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~ 405 (480)
T PLN02555 337 DKGKIVQ-WCPQEK---VLAHPSVACFVT-----H-CGW-NSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLC 405 (480)
T ss_pred CceEEEe-cCCHHH---HhCCCccCeEEe-----c-CCc-chHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEcc
Confidence 5677777 899877 564 4455552 1 222 28999999999999987433 33434333 5676651
Q ss_pred ---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 420 ---------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 420 ---------~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+++++++.+++.+ ++.+.+|+++.+++
T Consensus 406 ~~~~~~~~v~~~~v~~~v~~vm~~-----~~g~~~r~ra~~l~ 443 (480)
T PLN02555 406 RGEAENKLITREEVAECLLEATVG-----EKAAELKQNALKWK 443 (480)
T ss_pred CCccccCcCcHHHHHHHHHHHhcC-----chHHHHHHHHHHHH
Confidence 367999999999974 23456666666653
No 168
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.68 E-value=0.1 Score=43.72 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=58.1
Q ss_pred EEEEec-CCChHHHHHHHHHcCCCcEEE--ecCCCCcch--HHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 325 FIITGK-GPDKESYEEKIRRLRLKRVAF--RTMWLSAED--YPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 325 l~IvG~-G~~~~~l~~~~~~~~l~~V~f--~G~~~~~~~--~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
++|+|. ......|++.+++.|.+-+.+ .+. ..... ++..+..||++|++...-+....-.+--+|-..|+|++.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~-~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGG-DEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCC-CccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 456664 577889999999999876766 233 33444 999999999999973222333233345566778999999
Q ss_pred ecCccchhcc
Q 011690 400 VSYSCIEELV 409 (479)
Q Consensus 400 s~~~~~~e~i 409 (479)
++..+...+.
T Consensus 81 ~~~~~~~~l~ 90 (97)
T PF10087_consen 81 SRSRGVSSLE 90 (97)
T ss_pred ECCCCHHHHH
Confidence 9876665443
No 169
>PLN02554 UDP-glycosyltransferase family protein
Probab=94.62 E-value=0.71 Score=50.00 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=51.5
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----ch-hccccCccEEEeC--
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IE-ELVKVDKNGLLFS-- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~-e~i~~~~~G~l~~-- 419 (479)
+++.+.+ |+|+.+ +|+...+..+. +. .|. .+++||+.+|+|+|+....+ .. .+++.-+.|..+.
T Consensus 342 ~~g~v~~-W~PQ~~---iL~H~~v~~Fv---tH-~G~-nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~ 412 (481)
T PLN02554 342 DIGKVIG-WAPQVA---VLAKPAIGGFV---TH-CGW-NSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKY 412 (481)
T ss_pred cCceEEe-eCCHHH---HhCCcccCccc---cc-Ccc-chHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecc
Confidence 4666666 899877 66444443332 21 223 38999999999999986433 33 3344445666541
Q ss_pred -------------CHHHHHHHHHHHHh
Q 011690 420 -------------SSSELADQLLMLFK 433 (479)
Q Consensus 420 -------------~~~~la~~l~~l~~ 433 (479)
+.+++++++.+++.
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhc
Confidence 46789999999996
No 170
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.39 E-value=1.4 Score=47.79 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=50.8
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~--- 418 (479)
.++.+.+ |+|+.+ +|+...+.++. +. .|. ++++||+++|+|+|+-...+ +...+ +.-+.|.-.
T Consensus 343 ~g~~v~~-w~PQ~~---vL~h~~v~~fv---tH-~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~ 413 (477)
T PLN02863 343 RGLVIRG-WAPQVA---ILSHRAVGAFL---TH-CGW-NSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEG 413 (477)
T ss_pred CCEEecC-CCCHHH---HhcCCCcCeEE---ec-CCc-hHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccC
Confidence 4577778 799865 67764443332 21 223 28999999999999986433 33433 333667665
Q ss_pred ----CCHHHHHHHHHHHHh
Q 011690 419 ----SSSSELADQLLMLFK 433 (479)
Q Consensus 419 ----~~~~~la~~l~~l~~ 433 (479)
-+.+++++++.+++.
T Consensus 414 ~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 414 ADTVPDSDELARVFMESVS 432 (477)
T ss_pred CCCCcCHHHHHHHHHHHhh
Confidence 146789999998884
No 171
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.33 E-value=1.5 Score=40.84 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhc------CCcEEE--EecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhc
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLR------RSAFIV--DWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKM 171 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~------~~~~ii--~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 171 (479)
.+||+|++++|..- +..-++.++. |+|+|+ +|-... ..+.- -|.+++.
T Consensus 91 ~rPdvii~nGpg~~---vp~~~~~~l~~~~~~~~~kiIyIES~aRv~---------~lSlT------------Gklly~~ 146 (170)
T PF08660_consen 91 ERPDVIISNGPGTC---VPVCLAAKLLRLLGLRGSKIIYIESFARVK---------TLSLT------------GKLLYPF 146 (170)
T ss_pred hCCCEEEEcCCcee---eHHHHHHHHHHHhhccCCcEEEEEeeeecC---------CCchH------------HHHHHHh
Confidence 78999999996533 2222334444 788776 222111 01111 2344456
Q ss_pred CCEEEEeCHHHHHH
Q 011690 172 ANGCLCVTQAMQHE 185 (479)
Q Consensus 172 ad~vi~vS~~~~~~ 185 (479)
||.+++.-+++++.
T Consensus 147 aD~f~VQW~~l~~~ 160 (170)
T PF08660_consen 147 ADRFIVQWEELAEK 160 (170)
T ss_pred CCEEEEcCHHHHhH
Confidence 99999998877754
No 172
>PLN03015 UDP-glucosyl transferase
Probab=93.96 E-value=1.2 Score=48.13 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=59.1
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEeC----
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLFS---- 419 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~~---- 419 (479)
+.+.+ |+|+.+ +|+...+..+. + ..|. ++++||+++|+|+|+-...+ ....+ +.-+.|+-+.
T Consensus 337 l~v~~-W~PQ~~---vL~h~~vg~fv---t-H~Gw-nS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~ 407 (470)
T PLN03015 337 LVVTQ-WAPQVE---ILSHRSIGGFL---S-HCGW-SSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPS 407 (470)
T ss_pred eEEEe-cCCHHH---HhccCccCeEE---e-cCCc-hhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEeccccc
Confidence 55666 899988 45566664443 2 1222 28899999999999986433 23333 3335565552
Q ss_pred ----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 011690 420 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 453 (479)
Q Consensus 420 ----~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
+.+++++++.+++.+ ..++.+.||+++.+++
T Consensus 408 ~~~v~~e~i~~~v~~lm~~---~~eeg~~~R~ra~~lk 442 (470)
T PLN03015 408 EKVIGREEVASLVRKIVAE---EDEEGQKIRAKAEEVR 442 (470)
T ss_pred CCccCHHHHHHHHHHHHcc---CcccHHHHHHHHHHHH
Confidence 367999999999962 1234566777776653
No 173
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=93.83 E-value=0.18 Score=48.93 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=60.0
Q ss_pred CCCCeEEEEEecCCCCCCHHH--HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCC--hHH
Q 011690 261 PNRPALVVSSTSWTPDEDFGI--LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KES 336 (479)
Q Consensus 261 ~~~~~~i~~~g~~~~~K~~~~--lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~--~~~ 336 (479)
.+++.+++..|.=.+.|.... ..+.+..+.+ . ...+++.|...+ .+.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~----------------------------~-~~~vvl~g~~~~~~~~~ 153 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKE----------------------------R-GYRVVLLGGPEEQEKEI 153 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC----------------------------C-T-EEEE--SSHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHh----------------------------h-CceEEEEccchHHHHHH
Confidence 455667777776556676543 5555554432 1 277888886654 222
Q ss_pred HHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 337 YEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 337 l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
.++..+...-..+.+.|. .+-.++..+++.||++|.+ .+| .+==|.|+|+|+|+--...
T Consensus 154 ~~~~~~~~~~~~~~~~~~-~~l~e~~ali~~a~~~I~~---Dtg-----~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 154 ADQIAAGLQNPVINLAGK-TSLRELAALISRADLVIGN---DTG-----PMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp HHHHHTTHTTTTEEETTT-S-HHHHHHHHHTSSEEEEE---SSH-----HHHHHHHTT--EEEEESSS
T ss_pred HHHHHHhcccceEeecCC-CCHHHHHHHHhcCCEEEec---CCh-----HHHHHHHHhCCEEEEecCC
Confidence 222222221136888898 8999999999999999986 444 3445778999999884333
No 174
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=93.77 E-value=0.74 Score=46.05 Aligned_cols=91 Identities=9% Similarity=0.011 Sum_probs=57.1
Q ss_pred hcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchhhh--hhhhcCCC----chhHHHHHHHhHHHHHHHHhhc
Q 011690 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL--LSLSLGRR----SHFVSIYRCFSVLRIEKYYGKM 171 (479)
Q Consensus 98 ~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~e~~~~~~ 171 (479)
...+.|++|+.+. -.+.+.+.+++...|+|+++|-|+...-- ..+..... ..+..++..+ +..+-+..++.
T Consensus 169 ~lP~advyHsvst--GyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~-f~~l~~~~Y~~ 245 (268)
T PF11997_consen 169 PLPKADVYHSVST--GYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRF-FESLSRLAYRA 245 (268)
T ss_pred cCCCCCEEecCCc--cHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHH-HHHHHHHHHHh
Confidence 3467899999984 33455666778889999999999974211 11111111 1222233333 55667888999
Q ss_pred CCEEEEeCHHHHHHHHHhhCC
Q 011690 172 ANGCLCVTQAMQHELAQNWGI 192 (479)
Q Consensus 172 ad~vi~vS~~~~~~l~~~~~~ 192 (479)
||.|+++.+..+++ +...|.
T Consensus 246 Ad~I~~l~~~n~~~-q~~~Ga 265 (268)
T PF11997_consen 246 ADRITPLYEYNREW-QIELGA 265 (268)
T ss_pred hCeecccchhhHHH-HHHhCC
Confidence 99999999976643 344454
No 175
>PRK14986 glycogen phosphorylase; Provisional
Probab=93.43 E-value=0.42 Score=54.48 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=98.7
Q ss_pred cCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChHH
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKES 336 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~~ 336 (479)
+.++. +.++.+-|++..|.... ++..+..+.+- .+..........+++.|+- |.-..
T Consensus 539 ldp~s-Lfd~qakR~heYKRq~LNil~~i~ry~~i--------------------~~~p~~~~~P~~~IFaGKAaP~y~~ 597 (815)
T PRK14986 539 VNPKA-LFDVQIKRIHEYKRQLMNVLHVITRYNRI--------------------KADPDAKWVPRVNIFAGKAASAYYM 597 (815)
T ss_pred cCccc-ceeeeehhhhhhhhhhHHHhhhHHHHHHH--------------------HhCCCcCCCCeEEEEeecCCCCcHH
Confidence 34443 58889999999999888 77776666441 1110111234899999974 32222
Q ss_pred HHH---HHHHc--------CC-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 337 YEE---KIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 337 l~~---~~~~~--------~l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
-++ .+.+. .+ + +|.|+-. ....--..++.+||+-.--++. ..|.-|+.=.=+|..|.+-++|--
T Consensus 598 aK~iIk~I~~va~~in~Dp~v~~~lkVVFlen-Y~vslAe~lipg~Dv~eqis~a-g~EASGTsnMK~alNGaLtlgtlD 675 (815)
T PRK14986 598 AKHIIHLINDVAKVINNDPQIGDKLKVVFIPN-YSVSLAQLIIPAADLSEQISLA-GTEASGTSNMKFALNGALTIGTLD 675 (815)
T ss_pred HHHHHHHHHHHHHHhccChhhcCceeEEEeCC-CCHHHHHHhhhhhhhhhhCCCC-CccccCcchhhHHhcCceeeeccC
Confidence 222 22111 12 2 6899887 7788888999999999865433 334455566778999999999999
Q ss_pred ccchhcccc--CccEEEe-CCHHHHHH
Q 011690 403 SCIEELVKV--DKNGLLF-SSSSELAD 426 (479)
Q Consensus 403 ~~~~e~i~~--~~~G~l~-~~~~~la~ 426 (479)
|...|+.++ ++||+++ .+.+++.+
T Consensus 676 G~nvEi~e~vG~eN~~~fG~~~~ev~~ 702 (815)
T PRK14986 676 GANVEMLEHVGEENIFIFGNTAEEVEA 702 (815)
T ss_pred CchhHHHHhcCCCcEEEeCCCHHHHHH
Confidence 999999987 8899999 45666555
No 176
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.40 E-value=0.72 Score=52.60 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=98.2
Q ss_pred cCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChH-
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKE- 335 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~- 335 (479)
+.|+. +..+.+-|++..|.... ++..+..+.+- .+..........+++.|+- |.-.
T Consensus 526 ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i--------------------~~~p~~~~~P~~~IFaGKAaP~y~~ 584 (797)
T cd04300 526 VDPDS-LFDVQVKRIHEYKRQLLNVLHIIHLYNRI--------------------KENPNADIVPRTFIFGGKAAPGYYM 584 (797)
T ss_pred cCCCc-cEEEEeeechhhhhhhhHHHhhHHHHHHH--------------------HhCCCcCCCCeEEEEeccCCCCcHH
Confidence 34444 58899999999999888 76666665441 1111112234889999974 2222
Q ss_pred --HHHHHHHHc--------CC-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 --SYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 --~l~~~~~~~--------~l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+.+.+... .+ + +|.|+-. ....-...++.+||+-.--++. ..|.-|+.=.=+|..|.+-++|--
T Consensus 585 aK~iIklI~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseqis~a-g~EASGTsnMK~~lNGaltlgtlD 662 (797)
T cd04300 585 AKLIIKLINAVADVVNNDPDVGDKLKVVFLPN-YNVSLAEKIIPAADLSEQISTA-GKEASGTGNMKFMLNGALTIGTLD 662 (797)
T ss_pred HHHHHHHHHHHHHHhccChhcCCceEEEEeCC-CChHHHHHhhhhhhhhhhCCCC-CccccCCchhhHHhcCceeeeccc
Confidence 222222221 12 2 5899887 7788888999999998865433 334455566778999999999999
Q ss_pred ccchhcccc--CccEEEe-CCHHHHHH
Q 011690 403 SCIEELVKV--DKNGLLF-SSSSELAD 426 (479)
Q Consensus 403 ~~~~e~i~~--~~~G~l~-~~~~~la~ 426 (479)
|...|+.+. ++|+++| .+.+++.+
T Consensus 663 GanvEi~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 663 GANVEIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred chhHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 999999887 8899999 45555554
No 177
>PLN02207 UDP-glycosyltransferase
Probab=92.39 E-value=4.7 Score=43.59 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=51.3
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhc-cccCccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEEL-VKVDKNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~-i~~~~~G~l~--- 418 (479)
+++.+.+ |+|+.+ +|+...++.+. + ..|.. +++||+.+|+|+|+-...+ .... ++.-+.|+-+
T Consensus 332 ~~g~i~~-W~PQ~~---IL~H~~vg~Fv---T-H~Gwn-S~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~ 402 (468)
T PLN02207 332 GRGMICG-WSPQVE---ILAHKAVGGFV---S-HCGWN-SIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLD 402 (468)
T ss_pred CCeEEEE-eCCHHH---Hhcccccceee---e-cCccc-cHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecc
Confidence 4566666 899988 55665564432 2 12232 7899999999999986433 3343 3324556522
Q ss_pred --------CCHHHHHHHHHHHHh
Q 011690 419 --------SSSSELADQLLMLFK 433 (479)
Q Consensus 419 --------~~~~~la~~l~~l~~ 433 (479)
-+.+++++++.+++.
T Consensus 403 ~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 403 YRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccccCCcccHHHHHHHHHHHHh
Confidence 146799999999996
No 178
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.11 E-value=3.2 Score=44.74 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=52.1
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhccccC-ccEEEe---
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVD-KNGLLF--- 418 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i~~~-~~G~l~--- 418 (479)
++..+.+ |+|+.+ +|+..++..+. +.+ |. ++++||+.+|+|+|+-...+ ....+... +.|+-+
T Consensus 327 ~~g~v~~-W~PQ~~---iL~h~~vg~fv---tH~-G~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 327 EVGMIVS-WCSQIE---VLRHRAVGCFV---THC-GW-SSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred CCeEEEe-eCCHHH---HhCCcccceEE---eeC-Cc-ccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC
Confidence 5566666 899777 78888875553 212 12 27899999999999986433 33333331 234443
Q ss_pred ----CCHHHHHHHHHHHHh
Q 011690 419 ----SSSSELADQLLMLFK 433 (479)
Q Consensus 419 ----~~~~~la~~l~~l~~ 433 (479)
-+.+++++++.+++.
T Consensus 398 ~~~~~~~e~l~~av~~vm~ 416 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVME 416 (455)
T ss_pred cCCcCcHHHHHHHHHHHHh
Confidence 146899999999997
No 179
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=92.02 E-value=11 Score=35.75 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=37.9
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.++.....+.+.+++..+++.+|++|.. +-. ..+=|+++|+|+|+-+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Is~----RlH----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 237 FNVIIIDYSLSPDELLELISQADLVISM----RLH----GAILALSLGVPVIAISY 284 (286)
T ss_pred cceeEecCCCCHHHHHHHHhcCCEEEec----CCH----HHHHHHHcCCCEEEEec
Confidence 4555555558899999999999999963 333 67889999999998764
No 180
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=91.98 E-value=1.1 Score=45.37 Aligned_cols=72 Identities=14% Similarity=0.054 Sum_probs=48.3
Q ss_pred CEEEEEEecCC-ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 322 RLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 322 ~~~l~IvG~G~-~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
+..+++.|.|+ +.+..++ +.+. ...+.+.|. .+-.++..+++.||++|.. .+| .+==|-|+|+|+|+-
T Consensus 210 ~~~ivl~~G~~~e~~~~~~-i~~~-~~~~~l~g~-~sL~elaali~~a~l~I~n---DSG-----p~HlA~A~g~p~val 278 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKR-LAEG-FPYVEVLPK-LSLEQVARVLAGAKAVVSV---DTG-----LSHLTAALDRPNITL 278 (322)
T ss_pred CCeEEEeCCCHHHHHHHHH-HHcc-CCcceecCC-CCHHHHHHHHHhCCEEEec---CCc-----HHHHHHHhCCCEEEE
Confidence 45666753344 3333333 3332 245778898 8999999999999999975 444 334467899999987
Q ss_pred cCcc
Q 011690 401 SYSC 404 (479)
Q Consensus 401 ~~~~ 404 (479)
-.+.
T Consensus 279 fGpt 282 (322)
T PRK10964 279 YGPT 282 (322)
T ss_pred ECCC
Confidence 5433
No 181
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.84 E-value=2 Score=42.44 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=47.1
Q ss_pred CCCEEEEEEecCCCh---HHHHHHHHHc-CCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC
Q 011690 320 YPRLLFIITGKGPDK---ESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL 395 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~---~~l~~~~~~~-~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~ 395 (479)
.|++.++|-=. |.. ... ....++ +..++.+... .-.+.+++..||.++.- ++. +-+||+.+|+
T Consensus 153 ~p~~~lvvK~H-P~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~Ll~~s~~Vvti---nSt-----vGlEAll~gk 219 (269)
T PF05159_consen 153 NPDAKLVVKPH-PDERGGNKY-SYLEELPNLPNVVIIDD---DVNLYELLEQSDAVVTI---NST-----VGLEALLHGK 219 (269)
T ss_pred CCCCEEEEEEC-chhhCCCCh-hHhhhhhcCCCeEEECC---CCCHHHHHHhCCEEEEE---CCH-----HHHHHHHcCC
Confidence 67888776542 210 011 222222 3456666655 67899999999999975 233 7799999999
Q ss_pred cEEEecCcc
Q 011690 396 PVCAVSYSC 404 (479)
Q Consensus 396 PVIas~~~~ 404 (479)
||++-..+-
T Consensus 220 pVi~~G~~~ 228 (269)
T PF05159_consen 220 PVIVFGRAF 228 (269)
T ss_pred ceEEecCcc
Confidence 999975433
No 182
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=91.66 E-value=0.59 Score=53.15 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=98.4
Q ss_pred cCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChH-
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKE- 335 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~- 335 (479)
+.|+. +..+.+-|++..|.... ++..+..+.+- .+..........+++.|+- |.-.
T Consensus 523 ldp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i--------------------~~~p~~~~~P~~~IFaGKAaP~y~~ 581 (794)
T TIGR02093 523 VDPNS-IFDVQVKRLHEYKRQLLNVLHVIYLYNRI--------------------KEDPPKDIVPRTVIFGGKAAPGYHM 581 (794)
T ss_pred cCccc-cchhhheechhhhHHHHHHhhhHHHHHHH--------------------HhCCCcCCCCeEEEEEecCCCCcHH
Confidence 34444 47888999999999888 67766665541 1111111234789999974 3222
Q ss_pred --HHHHHHHHcC--------C-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 --SYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 --~l~~~~~~~~--------l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+.+.+.... + + +|.|+-. ....-...++.+||+-.--++. ..|.-|+.=.=+|..|.+-++|--
T Consensus 582 aK~iIklI~~va~~iN~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseqista-g~EASGTsnMK~alNGaltlgtlD 659 (794)
T TIGR02093 582 AKLIIKLINSVAEVVNNDPAVGDKLKVVFVPN-YNVSLAELIIPAADLSEQISTA-GKEASGTGNMKFMLNGALTIGTLD 659 (794)
T ss_pred HHHHHHHHHHHHHHhccChhhCCceeEEEeCC-CChHHHHHhhhhhhhhhhCCCC-CccccCcchhHHHhcCcceeeccc
Confidence 2222232222 3 2 6999987 7788888999999998865433 334455566778999999999999
Q ss_pred ccchhcccc--CccEEEe-CCHHHHHH
Q 011690 403 SCIEELVKV--DKNGLLF-SSSSELAD 426 (479)
Q Consensus 403 ~~~~e~i~~--~~~G~l~-~~~~~la~ 426 (479)
|...|+.++ ++|+|+| .+.+++.+
T Consensus 660 GanvEi~e~vG~eN~fiFG~~~~ev~~ 686 (794)
T TIGR02093 660 GANVEIREEVGAENIFIFGLTVEEVEA 686 (794)
T ss_pred chhHHHHHHhCcccEEEcCCCHHHHHH
Confidence 999999987 8899999 45555554
No 183
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=91.27 E-value=4.7 Score=45.58 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred cCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChH-
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKE- 335 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~- 335 (479)
+.|+. +..+.+-|++..|.... ++..+..+.+- .+........+.+++.|+- |.-.
T Consensus 440 ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~ri--------------------k~~p~~~~~Pv~~IFaGKAhP~d~~ 498 (713)
T PF00343_consen 440 LDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNRI--------------------KNNPNKKIRPVQFIFAGKAHPGDYM 498 (713)
T ss_dssp --TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHHH--------------------HHSTTSCCS-EEEEEE----TT-HH
T ss_pred CCcch-hhhhhhhhcccccccCcccccHHHHHHHH--------------------HhcccCCCCCeEEEEeccCCCCcHH
Confidence 34443 67889999999999877 44444444331 1110112234899999975 3222
Q ss_pred --HHHHHHHHc--------CC-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 --SYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 --~l~~~~~~~--------~l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+.+.+.+. .+ + +|.|+-. .+..-...++.++|+-+-.++. ..|.-|+.-.=+|..|.+-++|--
T Consensus 499 gK~iIk~I~~va~~in~Dp~v~~~lkVvFlen-YdvslA~~lipg~DVwln~p~~-p~EASGTSgMK~~~NGaL~lstlD 576 (713)
T PF00343_consen 499 GKEIIKLINNVAEVINNDPEVGDRLKVVFLEN-YDVSLAEKLIPGVDVWLNIPTR-PKEASGTSGMKAAMNGALNLSTLD 576 (713)
T ss_dssp HHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT--SHHHHHHHGGG-SEEEE---T-TSSSS-SHHHHHHHTT-EEEEESS
T ss_pred HHHHHHHHHHHHHHHhcChhhccceeEEeecC-CcHHHHHHHhhhhhhhhhCCCC-CccccCCCcchhhcCCCeEEeccc
Confidence 222222221 23 2 6899987 7888888999999999975433 446677788889999999999999
Q ss_pred ccchhcccc--CccEEEe-CCHHHH
Q 011690 403 SCIEELVKV--DKNGLLF-SSSSEL 424 (479)
Q Consensus 403 ~~~~e~i~~--~~~G~l~-~~~~~l 424 (479)
|..-|+.+. .+++++| .+.+++
T Consensus 577 G~niEi~e~vG~eN~fiFG~~~~ev 601 (713)
T PF00343_consen 577 GWNIEIAEAVGEENIFIFGLTAEEV 601 (713)
T ss_dssp TCHHHHHHHH-GGGSEEES-BHHHH
T ss_pred chhHHHHHhcCCCcEEEcCCCHHHH
Confidence 998888764 4678999 445554
No 184
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.19 E-value=1.7 Score=43.53 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=62.7
Q ss_pred EEEecC-CChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe----
Q 011690 326 IITGKG-PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV---- 400 (479)
Q Consensus 326 ~IvG~G-~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas---- 400 (479)
+++|.+ |....+.+.+++. +++.+.-. .++|++++.+||+.+.. . |+++.|+...|+|.++-
T Consensus 190 iV~gs~~p~l~~l~k~~~~~--~~i~~~~~---~~dma~LMke~d~aI~A----a----GstlyEa~~lgvP~l~l~~a~ 256 (318)
T COG3980 190 IVVGSSNPTLKNLRKRAEKY--PNINLYID---TNDMAELMKEADLAISA----A----GSTLYEALLLGVPSLVLPLAE 256 (318)
T ss_pred EEecCCCcchhHHHHHHhhC--CCeeeEec---chhHHHHHHhcchheec----c----chHHHHHHHhcCCceEEeeec
Confidence 345643 5555555555543 67777655 89999999999999963 3 34999999999994333
Q ss_pred cCccchhccccCccEEEe-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011690 401 SYSCIEELVKVDKNGLLF-----SSSSELADQLLMLFKGFPDDSDVLKKLRN 447 (479)
Q Consensus 401 ~~~~~~e~i~~~~~G~l~-----~~~~~la~~l~~l~~~~~~~~~~~~~~~~ 447 (479)
+........ ..-|... -........+.++.+ |...++.+..
T Consensus 257 NQ~~~a~~f--~~lg~~~~l~~~l~~~~~~~~~~~i~~----d~~~rk~l~~ 302 (318)
T COG3980 257 NQIATAKEF--EALGIIKQLGYHLKDLAKDYEILQIQK----DYARRKNLSF 302 (318)
T ss_pred cHHHHHHHH--HhcCchhhccCCCchHHHHHHHHHhhh----CHHHhhhhhh
Confidence 322222222 1223333 224556666777777 4555555443
No 185
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=90.94 E-value=0.66 Score=52.72 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=97.5
Q ss_pred cCCCCCeEEEEEecCCCCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChH-
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKE- 335 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~-lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~- 335 (479)
+.|+. +.++.+-|++..|.... ++..+..+.+- .+..........+++.|+- |.-.
T Consensus 525 ldp~s-lfdvq~kR~heYKRq~Lnil~ii~~y~~i--------------------~~~p~~~~~P~~~IFaGKAaP~y~~ 583 (798)
T PRK14985 525 INPQA-IFDVQIKRLHEYKRQHLNLLHILALYKEI--------------------RENPQADRVPRVFLFGAKAAPGYYL 583 (798)
T ss_pred cCchh-cchhhHhhhhhhhhhhhHhhhhHHHHHHH--------------------HhCCCcCCCCeEEEEeecCCCCcHH
Confidence 34443 57888999999999887 77766665541 1111111233899999974 2222
Q ss_pred --HHHHHHHHcC--------C-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 336 --SYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 336 --~l~~~~~~~~--------l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
.+.+.|.... + + +|.|+-. ....-...++.+||+-.--++. ..|.-|+.=.=+|..|.+-++|--
T Consensus 584 aK~iIklI~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~lipaaDvseqis~a-g~EASGTsnMK~amNGaLtlgtlD 661 (798)
T PRK14985 584 AKNIIFAINKVAEVINNDPLVGDKLKVVFLPD-YCVSAAELLIPAADISEQISTA-GKEASGTGNMKLALNGALTVGTLD 661 (798)
T ss_pred HHHHHHHHHHHHHHhcCChhhCCceeEEEeCC-CChHHHHHHhhhhhhhhhCCCC-CccccCcchhHHHhcCceeeeccc
Confidence 2222222221 1 2 6999987 7888888999999998865433 334455566778999999999999
Q ss_pred ccchhcccc--CccEEEe-CCHHHHHH
Q 011690 403 SCIEELVKV--DKNGLLF-SSSSELAD 426 (479)
Q Consensus 403 ~~~~e~i~~--~~~G~l~-~~~~~la~ 426 (479)
|..-|+.+. ++||+++ .+.+++.+
T Consensus 662 GanvEi~e~vG~eN~f~fG~~~~ev~~ 688 (798)
T PRK14985 662 GANVEIAEQVGEENIFIFGHTVEQVKA 688 (798)
T ss_pred chHHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 999899876 7899999 45555544
No 186
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=90.52 E-value=1.1 Score=36.99 Aligned_cols=73 Identities=10% Similarity=-0.013 Sum_probs=42.7
Q ss_pred CCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE
Q 011690 53 HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (479)
Q Consensus 53 ~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii 132 (479)
.+|++++.+|..+. ..-..++ .+...+.+++.++.+ ++.|+||.|+.-+. ..--+.+.++..|.+.|+
T Consensus 13 tngLKVYYlP~~~~--~~~~t~P--------t~~~~~pl~R~Ilir-E~I~IVHgH~a~S~-l~hE~i~hA~~mGlktVf 80 (90)
T PF08288_consen 13 TNGLKVYYLPLKVF--YNQCTLP--------TLFGSFPLLRNILIR-ERIDIVHGHQAFST-LCHEAILHARTMGLKTVF 80 (90)
T ss_pred CCCeEEEeecchhh--hcCcchH--------HHHHhhHHHHHHHHH-cCeeEEEeehhhhH-HHHHHHHHHHhCCCcEEe
Confidence 57899999993321 1111111 122233334444444 89999999983221 112234567788999999
Q ss_pred EecCc
Q 011690 133 DWHNF 137 (479)
Q Consensus 133 ~~h~~ 137 (479)
|-|+.
T Consensus 81 TDHSL 85 (90)
T PF08288_consen 81 TDHSL 85 (90)
T ss_pred ecccc
Confidence 98875
No 187
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=90.14 E-value=3 Score=44.68 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=49.3
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Ccc---c-hhccccCccEEEe-CC
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSC---I-EELVKVDKNGLLF-SS 420 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~---~-~e~i~~~~~G~l~-~~ 420 (479)
.+|.+.+ |+|+.++. ++...+..+. ...|+. .++|++.+|+|+|+.. .+. . .-+.+++..+.+. .+
T Consensus 335 ~nV~~~~-W~PQ~~ll--l~H~~v~~Fv----THgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~ 406 (496)
T KOG1192|consen 335 GNVVLSK-WAPQNDLL--LDHPAVGGFV----THGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRD 406 (496)
T ss_pred CceEEec-CCCcHHHh--cCCCcCcEEE----ECCccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhh
Confidence 4688888 89999976 3333343332 223454 5699999999999765 333 3 3445555555555 21
Q ss_pred --HHHHHHHHHHHHh
Q 011690 421 --SSELADQLLMLFK 433 (479)
Q Consensus 421 --~~~la~~l~~l~~ 433 (479)
...+.+++..++.
T Consensus 407 ~~~~~~~~~~~~il~ 421 (496)
T KOG1192|consen 407 LVSEELLEAIKEILE 421 (496)
T ss_pred cCcHHHHHHHHHHHc
Confidence 2337777777777
No 188
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=89.92 E-value=0.9 Score=49.24 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=55.3
Q ss_pred CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc----chhcc-ccCccEEEeC--
Q 011690 347 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELV-KVDKNGLLFS-- 419 (479)
Q Consensus 347 ~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~----~~e~i-~~~~~G~l~~-- 419 (479)
.++.+.+ |+|+.+ +|+...+..+. +. .|+ ++++||+.+|+|+|+....+ ....+ +.-+.|...+
T Consensus 338 rg~vv~~-W~PQ~~---iL~h~~vg~Fi---tH-~G~-nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 RGFVVPS-WAPQAE---ILAHQAVGGFL---TH-CGW-SSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP 408 (481)
T ss_pred CCEEEee-cCCHHH---HhCCcccCeeE---ec-Cch-hHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC
Confidence 4588878 899887 67777774443 22 223 38999999999999997443 33444 3445676662
Q ss_pred ----CHHHHHHHHHHHHhc
Q 011690 420 ----SSSELADQLLMLFKG 434 (479)
Q Consensus 420 ----~~~~la~~l~~l~~~ 434 (479)
+.+++++++.+++.+
T Consensus 409 ~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 467999999999974
No 189
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=87.65 E-value=40 Score=35.50 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=63.4
Q ss_pred EEEecCCChHHHHHHHHHcC-CCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 326 IITGKGPDKESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 326 ~IvG~G~~~~~l~~~~~~~~-l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
+-.+...+..-.+..+.... ..++.+.-- -..+++...++++|+.|- ++.. .++=||+.|+|+|+-.+..
T Consensus 244 ~~~~~s~d~~va~~ia~~~~~~~~i~~~~d-~~~~~~~~~l~~~dl~Vg----~R~H----saI~al~~g~p~i~i~Y~~ 314 (385)
T COG2327 244 IDYGASDDLAVADAIAQLVLDSAEILVSSD-EYAEELGGILAACDLIVG----MRLH----SAIMALAFGVPAIAIAYDP 314 (385)
T ss_pred eeccccchhHHHHHHHhhcCCccceEeecc-hHHHHHHHHhccCceEEe----ehhH----HHHHHHhcCCCeEEEeecH
Confidence 33334344444444444433 256766643 114778889999999996 3444 7889999999999987544
Q ss_pred c-hhcccc-CccEEEe----CCHHHHHHHHHHHHhcCCCCHHHHHH
Q 011690 405 I-EELVKV-DKNGLLF----SSSSELADQLLMLFKGFPDDSDVLKK 444 (479)
Q Consensus 405 ~-~e~i~~-~~~G~l~----~~~~~la~~l~~l~~~~~~~~~~~~~ 444 (479)
- ..+.++ +-.++.. -+.+.+.+...+.+.. .++.+++
T Consensus 315 K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~---~~~~~~~ 357 (385)
T COG2327 315 KVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTK---LDELRER 357 (385)
T ss_pred HHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhc---cHHHHhh
Confidence 2 222222 3345555 2366777777666664 4454433
No 190
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.97 E-value=15 Score=40.87 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=99.8
Q ss_pred ccccccCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEec-CC
Q 011690 254 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-GP 332 (479)
Q Consensus 254 ~~~~~~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~-G~ 332 (479)
|..++++.+. +++.....+. |=-...++.+..+.++ .|+-.|.+.-. --
T Consensus 750 r~~y~Lp~d~-vvf~~FNqLy--KidP~~l~~W~~ILk~---------------------------VPnS~LwllrfPa~ 799 (966)
T KOG4626|consen 750 RSQYGLPEDA-VVFCNFNQLY--KIDPSTLQMWANILKR---------------------------VPNSVLWLLRFPAV 799 (966)
T ss_pred CCCCCCCCCe-EEEeechhhh--cCCHHHHHHHHHHHHh---------------------------CCcceeEEEecccc
Confidence 4456676553 2333333332 4445677887777665 78766554432 11
Q ss_pred ChHHHHHHHHHcCC--CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccc-----
Q 011690 333 DKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI----- 405 (479)
Q Consensus 333 ~~~~l~~~~~~~~l--~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~----- 405 (479)
-.+.++..+.++|+ ++|.|..- ...+|=..-..-||+.+-+..- .|.. +-.|.+.+|+|+|.-...-.
T Consensus 800 ge~rf~ty~~~~Gl~p~riifs~v-a~k~eHvrr~~LaDv~LDTplc-nGhT---Tg~dvLw~GvPmVTmpge~lAsrVa 874 (966)
T KOG4626|consen 800 GEQRFRTYAEQLGLEPDRIIFSPV-AAKEEHVRRGQLADVCLDTPLC-NGHT---TGMDVLWAGVPMVTMPGETLASRVA 874 (966)
T ss_pred chHHHHHHHHHhCCCccceeeccc-cchHHHHHhhhhhhhcccCcCc-CCcc---cchhhhccCCceeecccHHHHHHHH
Confidence 23788999999999 58999986 6667766677778888753211 3332 44688899999997642221
Q ss_pred -hhccccCccEEEe-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 406 -EELVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 406 -~e~i~~~~~G~l~-~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
+-+.. -..|-++ ++-++..+.-.+|-. |.+.++++|...++.
T Consensus 875 ~Sll~~-~Gl~hliak~~eEY~~iaV~Lat----d~~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 875 ASLLTA-LGLGHLIAKNREEYVQIAVRLAT----DKEYLKKLRAKLRKA 918 (966)
T ss_pred HHHHHH-cccHHHHhhhHHHHHHHHHHhhc----CHHHHHHHHHHHHHH
Confidence 12222 2334444 788888888888877 577788887766653
No 191
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.05 E-value=3.6 Score=41.75 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=98.1
Q ss_pred CCeEEEEEecC--CCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHH
Q 011690 263 RPALVVSSTSW--TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 340 (479)
Q Consensus 263 ~~~~i~~~g~~--~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~ 340 (479)
.+.+-+.-|+= +-+.|...++.++-.+... ..+-+||+.|-++.+-..---..-=-|-++.
T Consensus 225 ~~viaLLPGsR~pea~~nl~~il~slcal~~~----------~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~------- 287 (412)
T COG4370 225 VPVIALLPGSRVPEAQTNLAVILGSLCALPAM----------FALVVFWAAIAPELPLLLLWTLEERQGWQPL------- 287 (412)
T ss_pred CceEEecCCCCChHHHhhHHHHHHHHhhhHHH----------HHHHHHHhccCcCCCHHHHHHHHHhcCcchh-------
Confidence 34444444432 2356777777765555432 2335899999887221110000000111121
Q ss_pred HHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch----------hccc
Q 011690 341 IRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE----------ELVK 410 (479)
Q Consensus 341 ~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~----------e~i~ 410 (479)
+...+-+|..+ |++.+...+++.++|+.+-- -|+..=.+...|+|||+....|.. .++
T Consensus 288 ad~~~kdnc~l---~lsqqsfadiLH~adaalgm--------AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLL- 355 (412)
T COG4370 288 ADRFGKDNCSL---WLSQQSFADILHAADAALGM--------AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLL- 355 (412)
T ss_pred hhhhccCceEE---EEeHHHHHHHHHHHHHHHHh--------ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHh-
Confidence 11222234544 56788999999999996632 133556688999999998754432 122
Q ss_pred cCccEEEeCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhcC
Q 011690 411 VDKNGLLFSSSSELADQLLM-LFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVISQFD 478 (479)
Q Consensus 411 ~~~~G~l~~~~~~la~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 478 (479)
|..-.++....+-|.++.+ ++. |++.....|.|.++..-+. -.+..+.+++.+++|
T Consensus 356 -G~sltlv~~~aq~a~~~~q~ll~----dp~r~~air~nGqrRiGqa-------Gaa~rIAe~l~e~a~ 412 (412)
T COG4370 356 -GASLTLVRPEAQAAAQAVQELLG----DPQRLTAIRHNGQRRIGQA-------GAARRIAEELGEMAD 412 (412)
T ss_pred -cceeeecCCchhhHHHHHHHHhc----ChHHHHHHHhcchhhccCc-------chHHHHHHHHHHhcC
Confidence 3334445666666666666 777 6899999997777632122 144555556666654
No 192
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=84.04 E-value=12 Score=40.50 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=77.4
Q ss_pred EEEEEEec---CCChHHHHHHHHH-cCC-CcEEEe-cCCCC---cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhC
Q 011690 323 LLFIITGK---GPDKESYEEKIRR-LRL-KRVAFR-TMWLS---AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGC 393 (479)
Q Consensus 323 ~~l~IvG~---G~~~~~l~~~~~~-~~l-~~V~f~-G~~~~---~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~ 393 (479)
+.+.++|. |.-++.+-+..++ .+. ..+... |. .+ ...+.+.++.|...++|...+ --...++||+..
T Consensus 291 ~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~-~~~~~~~~y~~~m~~S~FCL~p~Gd~---~ts~R~fdai~~ 366 (464)
T KOG1021|consen 291 ILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGK-VSCDRPLNYMEGMQDSKFCLCPPGDT---PTSPRLFDAIVS 366 (464)
T ss_pred eEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCc-cccCCcchHHHHhhcCeEEECCCCCC---cccHhHHHHHHh
Confidence 56677775 4455566555555 111 122222 21 22 478999999999999994443 223389999999
Q ss_pred CC-cEEEecC--ccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 394 GL-PVCAVSY--SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 394 G~-PVIas~~--~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
|| |||.++. ....++++-.+.++.+. .+++-+.+.+++...+ .++...|+++...
T Consensus 367 gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~i~--~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 367 GCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLSIP--EEEVLRMRENVIR 424 (464)
T ss_pred CCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 99 9999984 33556665555566666 6666666566666433 4555777777764
No 193
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=83.02 E-value=1.6 Score=43.54 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=41.8
Q ss_pred cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC-cEEEec--CccchhccccCccEEEe
Q 011690 358 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-PVCAVS--YSCIEELVKVDKNGLLF 418 (479)
Q Consensus 358 ~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~-PVIas~--~~~~~e~i~~~~~G~l~ 418 (479)
..++.+.|+.|...++|...+ ....-++|||++|| |||.++ .-...+++.=....+.+
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~~---~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v 287 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGDG---PWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRV 287 (302)
T ss_pred chHHHHhcccCeEEEECCCCC---cccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEE
Confidence 557999999999999984332 14458999999999 899886 33356777444555555
No 194
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=82.16 E-value=16 Score=34.42 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE-EecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEe
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCV 178 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 178 (479)
.+||+++.......+.+ ....+..|+|+++ .-.-...+. ..++.+..+ -+.+.+..|.+++.
T Consensus 94 ~~P~~~i~~EtElWPnl---l~~a~~~~ip~~LvNarls~~s~---------~~~~~~~~~-----~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNL---LREAKRRGIPVVLVNARLSERSF---------RRYRRFPFL-----FRPLLSRFDRILAQ 156 (186)
T ss_dssp H--SEEEEES----HHH---HHH-----S-EEEEEE-----------------------HH-----HHHHGGG-SEEEES
T ss_pred hCCCEEEEEccccCHHH---HHHHhhcCCCEEEEeeeeccccc---------hhhhhhHHH-----HHHHHHhCCEEEEC
Confidence 69998777763333322 2334566889766 222221000 011111223 45566789999999
Q ss_pred CHHHHHHHHHhhCCe---EEEecC
Q 011690 179 TQAMQHELAQNWGIK---ATVLYD 199 (479)
Q Consensus 179 S~~~~~~l~~~~~~~---~~vi~n 199 (479)
|+...+.+.+. |.+ +.+..|
T Consensus 157 s~~da~r~~~l-G~~~~~v~v~Gn 179 (186)
T PF04413_consen 157 SEADAERFRKL-GAPPERVHVTGN 179 (186)
T ss_dssp SHHHHHHHHTT-T-S--SEEE---
T ss_pred CHHHHHHHHHc-CCCcceEEEeCc
Confidence 99999998776 665 566554
No 195
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=81.85 E-value=15 Score=33.64 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-CChHHHHHHHHH-
Q 011690 266 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKESYEEKIRR- 343 (479)
Q Consensus 266 ~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~~~~~l~~~~~~- 343 (479)
++|.+|.-. ++.||.++.. |+++.++.+- .+..+ ++=.|+| +.-+.-.+.++.
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~-----------------~~~~~~L~k~---G~~kL-iiQ~Grg~~~~~d~~~~~~k~ 60 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLS-----------------EEFLQELQKR---GFTKL-IIQIGRGQPFFGDPIDLIRKN 60 (170)
T ss_pred EEEEecccc----HHHHHHHHcC-----------------HHHHHHHHHc---CccEE-EEEecCCccCCCCHHHhhccc
Confidence 677777653 8899987642 2344444333 34322 2335777 222221222221
Q ss_pred cCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 344 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 344 ~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
.++ .|....+ ...+.+.+++||+++. ..| -| +++|.+..|+|.|..
T Consensus 61 ~gl-~id~y~f---~psl~e~I~~AdlVIs----HAG--aG-S~letL~l~KPlivV 106 (170)
T KOG3349|consen 61 GGL-TIDGYDF---SPSLTEDIRSADLVIS----HAG--AG-SCLETLRLGKPLIVV 106 (170)
T ss_pred CCe-EEEEEec---CccHHHHHhhccEEEe----cCC--cc-hHHHHHHcCCCEEEE
Confidence 122 2444444 7788999999999994 122 22 799999999997765
No 196
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=78.73 E-value=71 Score=34.05 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecC---------------CCCcchHHHHHHcCCEEEEcccCCCCCCCcHH
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTM---------------WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 386 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~---------------~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ 386 (479)
+-+++++|-|...+..-....+.|..+|.+.++ .++-+++..+|..+|++++. |++...-++..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss-Tsa~~~ii~~~ 256 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS-TSAPHPIITRE 256 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe-cCCCccccCHH
Confidence 456999999976665555555555556665543 24567899999999999983 44433334444
Q ss_pred HHH-HHhCCCcEEEecCccchhcc
Q 011690 387 VVD-MFGCGLPVCAVSYSCIEELV 409 (479)
Q Consensus 387 llE-ama~G~PVIas~~~~~~e~i 409 (479)
.+| ++.--...+..|.+-++++=
T Consensus 257 ~ve~a~~~r~~~livDiavPRdie 280 (414)
T COG0373 257 MVERALKIRKRLLIVDIAVPRDVE 280 (414)
T ss_pred HHHHHHhcccCeEEEEecCCCCCC
Confidence 443 44444446888887776654
No 197
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=78.22 E-value=3.2 Score=36.13 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 22 QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 22 ~~~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
.-.+..|.++ ||||.+.+..+- ....+..|++++.++
T Consensus 16 lala~~L~~r-Gh~V~~~~~~~~---~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 16 LALARALRRR-GHEVRLATPPDF---RERVEAAGLEFVPIP 52 (139)
T ss_dssp HHHHHHHHHT-T-EEEEEETGGG---HHHHHHTT-EEEESS
T ss_pred HHHHHHHhcc-CCeEEEeecccc---eecccccCceEEEec
Confidence 3456777776 999998885542 233356799999988
No 198
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=78.20 E-value=10 Score=34.71 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=42.2
Q ss_pred cCCCcEEEEeCCCCcchHH-HHHHHHHh-c-CCcEEEEecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEE
Q 011690 99 IASPDVFLVQNPPSVPTLV-AVKWASSL-R-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGC 175 (479)
Q Consensus 99 ~~~~DvI~~~~p~~~~~~~-~~~~~~~~-~-~~~~ii~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 175 (479)
..+||+|++.-| +++.+ +..+.++. . ++|++...-++. . -++ . ++...+|..
T Consensus 87 ~~~PD~IIsThp--~~~~~~l~~lk~~~~~~~~p~~tvvTD~~-~--------~H~-----~---------W~~~~~D~y 141 (169)
T PF06925_consen 87 EFQPDLIISTHP--FPAQVPLSRLKRRGRLPNIPVVTVVTDFD-T--------VHP-----F---------WIHPGVDRY 141 (169)
T ss_pred hcCCCEEEECCc--chhhhHHHHHHHhhcccCCcEEEEEcCCC-C--------CCc-----C---------eecCCCCEE
Confidence 489999999885 33444 44343332 3 466543222321 0 010 0 123679999
Q ss_pred EEeCHHHHHHHHHhhCCe
Q 011690 176 LCVTQAMQHELAQNWGIK 193 (479)
Q Consensus 176 i~vS~~~~~~l~~~~~~~ 193 (479)
++.|+.+++.+.+. |++
T Consensus 142 ~Vase~~~~~l~~~-Gi~ 158 (169)
T PF06925_consen 142 FVASEEVKEELIER-GIP 158 (169)
T ss_pred EECCHHHHHHHHHc-CCC
Confidence 99999999999886 887
No 199
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=77.01 E-value=4.8 Score=44.07 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=53.7
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccch----------------------
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE---------------------- 406 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~---------------------- 406 (479)
|.=.|. ++.+|+..+|+.+-++|=.-. ..| |.+-+||+|+|+|.|-.......
T Consensus 324 V~NHG~-l~~~ef~~lL~~akvfiGlGf--P~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhP 398 (559)
T PF15024_consen 324 VKNHGI-LSGDEFQQLLRKAKVFIGLGF--PYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHP 398 (559)
T ss_pred hhhcCc-CCHHHHHHHHHhhhEeeecCC--CCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCCh
Confidence 444576 899999999999999994311 111 24889999999999887533211
Q ss_pred --h-ccccCccEEEe--CCHHHHHHHHHHHHhc
Q 011690 407 --E-LVKVDKNGLLF--SSSSELADQLLMLFKG 434 (479)
Q Consensus 407 --e-~i~~~~~G~l~--~~~~~la~~l~~l~~~ 434 (479)
| .+. .-.-+.+ +|.+++-+++.++++.
T Consensus 399 Y~e~~iG-~PhVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 399 YAEEFIG-EPHVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred HHHhhCC-CCeEEEEcCCCHHHHHHHHHHHHhc
Confidence 1 121 1112333 6788999999999885
No 200
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.19 E-value=37 Score=34.64 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=65.0
Q ss_pred ceEEEEEecCC---CCChhHHHHHHHHHhhCCCcEEEEecCCCCCc------------ccccCCCCeEEEEeecCCCCCC
Q 011690 5 GRACVVVLGDL---GRSPRMQYQALSLARQMSLEVDVVAYGGSKPH------------AAILEHPSIHIHTMTQWPTIPR 69 (479)
Q Consensus 5 ~~~~i~~~~~~---g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~------------~~~~~~~gi~i~~~~~~~~~~~ 69 (479)
++.+++-.+.. |-|.-+......|.++ ||.|-|++..++.+. .....++|+.+..+| .. -
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~--sr--G 123 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP--SR--G 123 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC--CC--c
Confidence 34444444333 3344555667778775 999999997765432 122336788888888 21 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCchh
Q 011690 70 GLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGY 139 (479)
Q Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~~ 139 (479)
.+..+.+........+.. ..+|+|++.+ +...-.-.-......+-+++.....+.
T Consensus 124 ~lGGlS~at~~~i~~ldA------------aG~DvIIVET---VGvGQsev~I~~~aDt~~~v~~pg~GD 178 (323)
T COG1703 124 TLGGLSRATREAIKLLDA------------AGYDVIIVET---VGVGQSEVDIANMADTFLVVMIPGAGD 178 (323)
T ss_pred cchhhhHHHHHHHHHHHh------------cCCCEEEEEe---cCCCcchhHHhhhcceEEEEecCCCCc
Confidence 133333333333333333 7899999998 322211112334556666667777763
No 201
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=70.43 E-value=19 Score=32.03 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHcCCEEEEcccCCCCCCC-----cHHHHHHHhCCCcEEEecCccchhcccc--CccEEEeCCHHHHHHHHHHHH
Q 011690 362 PLLLGSADLGVCLHTSSSGLDL-----PMKVVDMFGCGLPVCAVSYSCIEELVKV--DKNGLLFSSSSELADQLLMLF 432 (479)
Q Consensus 362 ~~~l~~adi~v~p~~~s~~e~~-----p~~llEama~G~PVIas~~~~~~e~i~~--~~~G~l~~~~~~la~~l~~l~ 432 (479)
..++..||++|+- .|+.. .+-.-=|.|+|+|.|.-.-....-.+++ ...-.++.++++..+.|..++
T Consensus 67 ~~li~~aDvVVvr----FGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVR----FGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEE----echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 3578899999985 33322 1233346799999998865554333332 222233377888887776654
No 202
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.99 E-value=22 Score=35.30 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=67.8
Q ss_pred EEEEEEecCCChHHHHHHHHHcCC--Cc-EEEecCCCCcchHHHHHHcCCEEEEcccCCCCC-CCcHHHHHHHhCCCcEE
Q 011690 323 LLFIITGKGPDKESYEEKIRRLRL--KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~~l--~~-V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e-~~p~~llEama~G~PVI 398 (479)
+.+.+. |..+.++ .+.++|+ ++ |...|+ .+.+.=..+++...+-++-...|.+. |+..|+--|+.+|+|||
T Consensus 153 ~~~RvL---P~~~~l~-~~~~~G~~~~~iia~~gP-fs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vi 227 (256)
T TIGR00715 153 VFVRVL---PYPQALA-QALKLGFPSDRIIAMRGP-FSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVI 227 (256)
T ss_pred EEEEEC---CCchhhH-HHHHcCCChhcEEEEeCC-CCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEE
Confidence 555554 5555666 6788888 35 666787 88888888888776654433344333 67889999999999999
Q ss_pred EecCccchhccccCccEEEeCCHHHHHHHHHHHH
Q 011690 399 AVSYSCIEELVKVDKNGLLFSSSSELADQLLMLF 432 (479)
Q Consensus 399 as~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~ 432 (479)
.-.-+..+. .+-.+++.+++.+.+.+++
T Consensus 228 vI~RP~~~~------~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 228 RIARPQTIP------GVAIFDDISQLNQFVARLL 255 (256)
T ss_pred EEeCCCCCC------CCccCCCHHHHHHHHHHhc
Confidence 998775321 1245577888777776543
No 203
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=64.37 E-value=38 Score=33.45 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=51.8
Q ss_pred CEEEEEEe--cCCCh---HHHHHHHHHcCCCcEEEecCC----CCcchHHHHHHcCCEEEEcccCC-------CCCCCcH
Q 011690 322 RLLFIITG--KGPDK---ESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLPM 385 (479)
Q Consensus 322 ~~~l~IvG--~G~~~---~~l~~~~~~~~l~~V~f~G~~----~~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~ 385 (479)
+-++.++. .++.. +.+.+..+++|.+.|..+... -+.++..+.+..||+.++.-... .+-++-.
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~ 107 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLD 107 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHH
Confidence 34555554 34332 355566677788666655430 12345678899999998842221 1223334
Q ss_pred HHHHHHhCCCcEEEecCccc
Q 011690 386 KVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 386 ~llEama~G~PVIas~~~~~ 405 (479)
.+-++...|+|++.++.|.+
T Consensus 108 ~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 108 RLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHcCCeEEEccHHHH
Confidence 67789999999999987775
No 204
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=63.22 E-value=9.3 Score=33.32 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEEEEEec-CCChHHHHHHHHHcCCCcEEEecCCCCc------------------------chHHHHHHcCCEEEEcccC
Q 011690 323 LLFIITGK-GPDKESYEEKIRRLRLKRVAFRTMWLSA------------------------EDYPLLLGSADLGVCLHTS 377 (479)
Q Consensus 323 ~~l~IvG~-G~~~~~l~~~~~~~~l~~V~f~G~~~~~------------------------~~~~~~l~~adi~v~p~~~ 377 (479)
+++.|+|- |..-..+.+.+.+. +.+.+.|. +.. +++.+++..+|+.|-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~-v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf--- 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGA-VDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF--- 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEE-EETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEE-EecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEc---
Confidence 46788897 88777777777763 33444443 222 4689999999999875
Q ss_pred CCCCCCcHHHHHHHhCCCcEEEecCccch
Q 011690 378 SSGLDLPMKVVDMFGCGLPVCAVSYSCIE 406 (479)
Q Consensus 378 s~~e~~p~~llEama~G~PVIas~~~~~~ 406 (479)
+.....-.-+-.++.+|+|+|....|...
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 22232333555677889999887766643
No 205
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=60.64 E-value=61 Score=31.74 Aligned_cols=67 Identities=13% Similarity=0.017 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC-------CCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 335 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
+.+++..+++|.+ |..+-. .++..+.+..||+..++-..+ ..-++-..+-|+...|+|++.++.|++
T Consensus 51 ~~~~~af~~lG~~-v~~l~~---~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAi 124 (233)
T PRK05282 51 AKVAEALAPLGIE-VTGIHR---VADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGAN 124 (233)
T ss_pred HHHHHHHHHCCCE-EEEecc---chhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHH
Confidence 3455556666664 444443 456778899999888752221 122233456788999999999998774
No 206
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=60.25 E-value=75 Score=25.08 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=41.2
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-C-ChHHHHHHH
Q 011690 264 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-P-DKESYEEKI 341 (479)
Q Consensus 264 ~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-~-~~~~l~~~~ 341 (479)
+.++++.||-- .+.+.+-.++..+.++ .|+.. +|-|.. . -....++.+
T Consensus 4 ~rVli~GgR~~--~D~~~i~~~Ld~~~~~---------------------------~~~~~-lvhGga~~GaD~iA~~wA 53 (71)
T PF10686_consen 4 MRVLITGGRDW--TDHELIWAALDKVHAR---------------------------HPDMV-LVHGGAPKGADRIAARWA 53 (71)
T ss_pred CEEEEEECCcc--ccHHHHHHHHHHHHHh---------------------------CCCEE-EEECCCCCCHHHHHHHHH
Confidence 45777777643 4788888999888876 78766 555543 2 223456678
Q ss_pred HHcCCCcEEEecCC
Q 011690 342 RRLRLKRVAFRTMW 355 (479)
Q Consensus 342 ~~~~l~~V~f~G~~ 355 (479)
++.+++.+.|.-.|
T Consensus 54 ~~~gv~~~~~~adW 67 (71)
T PF10686_consen 54 RERGVPVIRFPADW 67 (71)
T ss_pred HHCCCeeEEeCcCh
Confidence 88888777775443
No 207
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=58.12 E-value=53 Score=30.54 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCch--hhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG--YTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLC 177 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 177 (479)
..+|+|++++- +....+..+...+.++|.++-+|.-- |+. +.+...-+. +... +-+..-.||.|+.
T Consensus 58 ~~~dll~aTsm--ldLa~l~gL~p~l~~~p~ilYFHENQl~YP~---~~~~~rd~~--~~~~-----ni~saLaAD~v~F 125 (168)
T PF12038_consen 58 HSYDLLFATSM--LDLATLRGLRPDLANVPKILYFHENQLAYPV---SPGQERDFQ--YGMN-----NIYSALAADRVVF 125 (168)
T ss_pred cCCCEEEeecc--ccHHHHHhhccCCCCCCEEEEEecCcccCCC---CCCcccccc--HHHH-----HHHHHHhceeeee
Confidence 67899999993 22222222333556899999999743 221 111111111 1111 2223346999999
Q ss_pred eCHHHHHHHHHh
Q 011690 178 VTQAMQHELAQN 189 (479)
Q Consensus 178 vS~~~~~~l~~~ 189 (479)
.|+.-++-+...
T Consensus 126 NS~~nr~sFL~~ 137 (168)
T PF12038_consen 126 NSAFNRDSFLDG 137 (168)
T ss_pred cchhhHHHHHHH
Confidence 999877765553
No 208
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=56.65 E-value=61 Score=31.34 Aligned_cols=120 Identities=12% Similarity=-0.001 Sum_probs=69.2
Q ss_pred HHHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 011690 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (479)
Q Consensus 24 ~a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~D 103 (479)
.|..|+++ ||+|.++-..............+.+++.-. .. .. ..+.+. -..+.|
T Consensus 15 va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd--~t-------~~-------~~L~~a---------gi~~aD 68 (225)
T COG0569 15 VARELSEE-GHNVVLIDRDEERVEEFLADELDTHVVIGD--AT-------DE-------DVLEEA---------GIDDAD 68 (225)
T ss_pred HHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEEEec--CC-------CH-------HHHHhc---------CCCcCC
Confidence 47888886 999999964443211111112344444333 11 11 122220 126899
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCCcEEE-EecCchhhhhhhhcCCCchhHHHHHHHhHHHHHHHHhhcCCEEEEeCHHH
Q 011690 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRCFSVLRIEKYYGKMANGCLCVTQAM 182 (479)
Q Consensus 104 vI~~~~p~~~~~~~~~~~~~~~~~~~~ii-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 182 (479)
++.+-+.......+++.++.+..++|.++ ..++..+ .+.++.. .+|.++.....+
T Consensus 69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~-------------~~~~~~~-----------g~~~ii~Pe~~~ 124 (225)
T COG0569 69 AVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEH-------------EKVLEKL-----------GADVIISPEKLA 124 (225)
T ss_pred EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHH-------------HHHHHHc-----------CCcEEECHHHHH
Confidence 88887766667778888887778888766 4444321 0111111 278888888888
Q ss_pred HHHHHHhhCCe
Q 011690 183 QHELAQNWGIK 193 (479)
Q Consensus 183 ~~~l~~~~~~~ 193 (479)
...+.+....+
T Consensus 125 ~~~l~~~i~~p 135 (225)
T COG0569 125 AKRLARLIVTP 135 (225)
T ss_pred HHHHHHHhcCC
Confidence 88887764333
No 209
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=56.38 E-value=1.6e+02 Score=31.29 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC---------------CCcchHHHHHHcCCEEEEcccCCCCCCCc
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLP 384 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~---------------~~~~~~~~~l~~adi~v~p~~~s~~e~~p 384 (479)
.++-++.|+|-|+.....-+.....|..+|.+.+.- ++.++..+.+..+|+++.. +.+...-+.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a-T~s~~~ii~ 256 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS-TGAPHPIVS 256 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC-CCCCCceEc
Confidence 345788999999877666666666666666665531 1224556677899999985 222221144
Q ss_pred HHHHHHHhCC--CcEEEecCccchhc
Q 011690 385 MKVVDMFGCG--LPVCAVSYSCIEEL 408 (479)
Q Consensus 385 ~~llEama~G--~PVIas~~~~~~e~ 408 (479)
...++.+..+ .|.+..|.+...++
T Consensus 257 ~e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 257 KEDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 4556665443 58788887765544
No 210
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=55.14 E-value=31 Score=30.78 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=58.6
Q ss_pred EEEEec--CCChHHHHHHHHHcCCCcEEEecCCCCcch------------------------------HHHHHHcCCEEE
Q 011690 325 FIITGK--GPDKESYEEKIRRLRLKRVAFRTMWLSAED------------------------------YPLLLGSADLGV 372 (479)
Q Consensus 325 l~IvG~--G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~------------------------------~~~~l~~adi~v 372 (479)
..+.|. .+-++++++.+++.+|+ |.|.++ ++..+ -..++..||++|
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~-v~F~~p-vtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvV 80 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLP-IVFSGP-VTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVI 80 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCC-eEEecC-CCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEE
Confidence 345553 24567777777777665 777776 54322 235788899999
Q ss_pred EcccCCCCCCC-----cHHHHHHHhCCCcEEEecCccchhccccCc-cE-EEeCCHHHHHHHHHHHH
Q 011690 373 CLHTSSSGLDL-----PMKVVDMFGCGLPVCAVSYSCIEELVKVDK-NG-LLFSSSSELADQLLMLF 432 (479)
Q Consensus 373 ~p~~~s~~e~~-----p~~llEama~G~PVIas~~~~~~e~i~~~~-~G-~l~~~~~~la~~l~~l~ 432 (479)
+- .|+.. .+-.-=|.|+|+|.|.-.-....-.+++-. .. .+++++++..+.|..++
T Consensus 81 vr----FGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 81 AL----FGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYIL 143 (144)
T ss_pred EE----echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHhh
Confidence 85 33322 112334678999998876554433332211 12 22366777766665543
No 211
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=53.42 E-value=1.7e+02 Score=31.13 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC----------------CCcchHHHHHHcCCEEEEcccCCCCCCC
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW----------------LSAEDYPLLLGSADLGVCLHTSSSGLDL 383 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~----------------~~~~~~~~~l~~adi~v~p~~~s~~e~~ 383 (479)
..+-+..|+|.|......-......|..+|.+..+- ++.+++...+..+|+++.. +++...
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~a-T~a~~~-- 255 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAA-VNVLEY-- 255 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEEC-cCCCCe--
Confidence 345689999998766666665566666666665541 2235667888999999985 222221
Q ss_pred cHHHHHHHhCCCcEEEecCccchhc
Q 011690 384 PMKVVDMFGCGLPVCAVSYSCIEEL 408 (479)
Q Consensus 384 p~~llEama~G~PVIas~~~~~~e~ 408 (479)
.+-..+.-+.|.+.-|.+-.+++
T Consensus 256 --vi~~~~~~~~~~~~iDLavPRdi 278 (414)
T PRK13940 256 --IVTCKYVGDKPRVFIDISIPQAL 278 (414)
T ss_pred --eECHHHhCCCCeEEEEeCCCCCC
Confidence 22233446889999997666554
No 212
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=52.28 E-value=69 Score=32.86 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=62.2
Q ss_pred hhhhccCCCchh-----hhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecC--CCCcchHHH---
Q 011690 294 AAILNEDDSTNE-----EVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTM--WLSAEDYPL--- 363 (479)
Q Consensus 294 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~--~~~~~~~~~--- 363 (479)
+..||..--|++ |..+-||-.. .|+..++|.|.-.-.+.++...+.+|+.-++.-|. .-+.+.+..
T Consensus 48 aellNA~Vlttpwg~ynes~~~eI~~l----npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~ 123 (337)
T COG2247 48 AELLNAPVLTTPWGIYNESVLDEIIEL----NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFR 123 (337)
T ss_pred HHHhCCeeEecCcccccHHHHHHHHhh----CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHH
Confidence 334555544544 4455555555 88888888776555677888888888765666553 011222333
Q ss_pred -----HHHcCCEEEEcccCCCCCCCcHHHHHHHhCCC-cEEEecC
Q 011690 364 -----LLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-PVCAVSY 402 (479)
Q Consensus 364 -----~l~~adi~v~p~~~s~~e~~p~~llEama~G~-PVIas~~ 402 (479)
.+....+.|+ .|-+++-++.|+|--|+ ||+.++.
T Consensus 124 ~~yp~af~n~kvvvv-----~GwDy~~~~~e~~k~~~~p~~~~n~ 163 (337)
T COG2247 124 EDYPNAFKNVKVVVV-----YGWDYADALMELMKEGIVPVILKNT 163 (337)
T ss_pred hhchhhhcCeEEEEE-----eccccHHHHHHHHhcCcceeEeccc
Confidence 3344345554 45567769999999987 6776653
No 213
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=52.22 E-value=2e+02 Score=29.83 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC---CCcchHH----HHHHcCCEEEEcccCCCCCCCcHHHHHHHh
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---LSAEDYP----LLLGSADLGVCLHTSSSGLDLPMKVVDMFG 392 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~---~~~~~~~----~~l~~adi~v~p~~~s~~e~~p~~llEama 392 (479)
..+-++.++|-|...+..-+...+.|..+|.+..+- ++.++.. .+...+|+.++.+ ++.+-..|....|.+.
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t-~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGS-SESAYAFPHLSWESLA 250 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcC-CcCCCCCceeeHHHHh
Confidence 345799999999888877777777787788887651 1233433 6678999999742 1233335656666655
Q ss_pred CCCcEEEecCccchhcc--ccCccEEEeCCHHHHHHHHH
Q 011690 393 CGLPVCAVSYSCIEELV--KVDKNGLLFSSSSELADQLL 429 (479)
Q Consensus 393 ~G~PVIas~~~~~~e~i--~~~~~G~l~~~~~~la~~l~ 429 (479)
.-.+-+.-|.+-.+++= ... .|...=|.++|.+...
T Consensus 251 ~~~~r~~iDLAvPRdId~v~~~-~~v~Ly~iDdL~~i~~ 288 (338)
T PRK00676 251 DIPDRIVFDFNVPRTFPWSETP-FPHRYLDMDFISEWVQ 288 (338)
T ss_pred hccCcEEEEecCCCCCcccccc-CCcEEEEhHHHHHHHH
Confidence 32224556655555442 112 2333335566555443
No 214
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=51.98 E-value=82 Score=29.99 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=29.3
Q ss_pred ceEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCC-CCCcccccCCCCeEEEEee
Q 011690 5 GRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGG-SKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~-~~~~~~~~~~~gi~i~~~~ 62 (479)
+++.|++.|+ +...+.....+.++ .+++|.++.... ...........||+++.++
T Consensus 2 ~ki~vl~sg~---gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGN---GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCC---ChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 5577777764 23334334444443 235666543332 2222234556789988876
No 215
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=51.76 E-value=95 Score=26.92 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=58.7
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhc--ccc
Q 011690 334 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL--VKV 411 (479)
Q Consensus 334 ~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~--i~~ 411 (479)
.+...+..++ +. .|.+... .+.+++.+.+..+|+.+.. . .-.+...+++.+ -++-+|++...|...+ -.-
T Consensus 8 ~~~~~~~l~~-~~-~v~~~~~-~~~~~~~~~l~~~d~ii~~---~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 8 PDEEIERLEE-GF-EVEFCDS-PSEEELAERLKDADAIIVG---S-GTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp SHHHHHHHHH-TS-EEEEESS-SSHHHHHHHHTTESEEEES---T-TSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred CHHHHHHHHC-Cc-eEEEeCC-CCHHHHHHHhCCCeEEEEc---C-CCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 3444555565 66 7999887 8899999999999999974 2 113777999998 8889999987776422 111
Q ss_pred CccEEEe-CC----HHHHHHHH
Q 011690 412 DKNGLLF-SS----SSELADQL 428 (479)
Q Consensus 412 ~~~G~l~-~~----~~~la~~l 428 (479)
.+.|+.+ +. .++.|+..
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 3457776 22 44555544
No 216
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.59 E-value=2.1e+02 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=29.0
Q ss_pred CEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe-cCccchhcc
Q 011690 369 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELV 409 (479)
Q Consensus 369 di~v~p~~~s~~e~~p~~llEama~G~PVIas-~~~~~~e~i 409 (479)
|++|+. ...| --.+++||.-+++|.|+- |..+.++++
T Consensus 175 D~vvvl---n~~e-~~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVL---NPEE-NHSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEec---Cccc-ccHHHHHHHHhCCCeEEEecCCCCccce
Confidence 998887 4344 234999999999999987 677777777
No 217
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=50.39 E-value=63 Score=33.27 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=57.5
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCc-----------chHHHHHHcCCEEEE--cccCC-CCCCCcHHH
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSA-----------EDYPLLLGSADLGVC--LHTSS-SGLDLPMKV 387 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~-----------~~~~~~l~~adi~v~--p~~~s-~~e~~p~~l 387 (479)
+-++-|+|-|..-..+-+.++..|.+ |....++.+. +++.++++.||++++ |.+.+ .+. +....
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~-i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGL-INAEE 219 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcc-cCHHH
Confidence 56899999998888888888877753 5555543443 459999999999876 33333 333 56788
Q ss_pred HHHHhCCCcEEEecCcc
Q 011690 388 VDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 388 lEama~G~PVIas~~~~ 404 (479)
+..|--|.-+|-+.-|+
T Consensus 220 ~a~MK~gailIN~aRG~ 236 (324)
T COG0111 220 LAKMKPGAILINAARGG 236 (324)
T ss_pred HhhCCCCeEEEECCCcc
Confidence 88888777666665555
No 218
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=50.08 E-value=86 Score=25.03 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHH
Q 011690 263 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 342 (479)
Q Consensus 263 ~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~ 342 (479)
++.++.+-+.|.+. ....+..+..+.+++. +..++.++.+.-....+..++..+
T Consensus 2 K~~ll~fwa~~c~~--c~~~~~~l~~l~~~~~------------------------~~~~v~~v~Vs~d~~~~~~~~~~~ 55 (95)
T PF13905_consen 2 KPVLLYFWASWCPP--CKKELPKLKELYKKYK------------------------KKDDVEFVFVSLDEDEEEWKKFLK 55 (95)
T ss_dssp SEEEEEEE-TTSHH--HHHHHHHHHHHHHHHT------------------------TTTTEEEEEEE-SSSHHHHHHHHH
T ss_pred CEEEEEEECCCCHH--HHHHHHHHHHHHHHhC------------------------CCCCEEEEEEEeCCCHHHHHHHHH
Confidence 45667777777753 5556666666655410 024799999998788889999998
Q ss_pred HcCCCcEEEecCCCCcchHHHHHHcCCE
Q 011690 343 RLRLKRVAFRTMWLSAEDYPLLLGSADL 370 (479)
Q Consensus 343 ~~~l~~V~f~G~~~~~~~~~~~l~~adi 370 (479)
+.+.....+.-. ......+....++
T Consensus 56 ~~~~~~~~~~~~---~~~~~~l~~~~~i 80 (95)
T PF13905_consen 56 KNNFPWYNVPFD---DDNNSELLKKYGI 80 (95)
T ss_dssp TCTTSSEEEETT---THHHHHHHHHTT-
T ss_pred hcCCCceEEeeC---cchHHHHHHHCCC
Confidence 886554444322 2333444444443
No 219
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.44 E-value=74 Score=29.36 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCC-----------cchHHHHHHcCCEEEE--cccCCCCCCCcHH
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVC--LHTSSSGLDLPMK 386 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~-----------~~~~~~~l~~adi~v~--p~~~s~~e~~p~~ 386 (479)
..+-++-|+|-|.....+-+.++..|. +|....+... ..++.++++.||++++ |.+.+...=+...
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~ 112 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAE 112 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeee
Confidence 456799999999888888888888775 5666654222 3568899999999876 3333333337889
Q ss_pred HHHHHhCCCcEEEecCcc
Q 011690 387 VVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 387 llEama~G~PVIas~~~~ 404 (479)
.++.|--|.-+|-+.-|+
T Consensus 113 ~l~~mk~ga~lvN~aRG~ 130 (178)
T PF02826_consen 113 FLAKMKPGAVLVNVARGE 130 (178)
T ss_dssp HHHTSTTTEEEEESSSGG
T ss_pred eeeccccceEEEeccchh
Confidence 999999998888877665
No 220
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=48.57 E-value=2.6e+02 Score=29.66 Aligned_cols=88 Identities=11% Similarity=0.181 Sum_probs=53.1
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC---------------CCcchHHHHHHcCCEEEEcccCCCCCCCc
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLP 384 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~---------------~~~~~~~~~l~~adi~v~p~~~s~~e~~p 384 (479)
.++-++.|+|.|+.....-......|..+|.+.+.- ++.++..+.+..+|+++....+.... +.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~-i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI-IG 258 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE-Ec
Confidence 345688999999877666666666676667666541 11234455677889999752221221 33
Q ss_pred HHHHHHHhC---CCcEEEecCccchhc
Q 011690 385 MKVVDMFGC---GLPVCAVSYSCIEEL 408 (479)
Q Consensus 385 ~~llEama~---G~PVIas~~~~~~e~ 408 (479)
...++.+.. +.|.+..|.+...++
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 344555432 468888887765544
No 221
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=48.34 E-value=1.7e+02 Score=26.40 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=48.7
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcccc----cCCCCe-EEEEeecCCCCCCCCCchhH-HHHHHHHHHHHHHHHHHHHH
Q 011690 23 YQALSLARQMSLEVDVVAYGGSKPHAAI----LEHPSI-HIHTMTQWPTIPRGLPKVLK-PVLLLLKPLIQFFMLLWFLC 96 (479)
Q Consensus 23 ~~a~~La~~~G~eV~Vv~~~~~~~~~~~----~~~~gi-~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~l~ 96 (479)
..|..|+++.|.+|++++.++....... ....|+ +++.+..... ..+ ... ....+...+.+
T Consensus 22 ~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~--~~~--~~~~~a~~l~~~~~~--------- 88 (164)
T PF01012_consen 22 EAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPAL--AEY--DPEAYADALAELIKE--------- 88 (164)
T ss_dssp HHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGG--TTC---HHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccc--ccc--CHHHHHHHHHHHHHh---------
Confidence 3455666657889999998853322222 233565 6777762111 101 111 12222223322
Q ss_pred hhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCc
Q 011690 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (479)
Q Consensus 97 ~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~ 137 (479)
.+||+|++... ...--++..++...+.+++.+.-..
T Consensus 89 ---~~~~lVl~~~t--~~g~~la~~lA~~L~~~~v~~v~~l 124 (164)
T PF01012_consen 89 ---EGPDLVLFGST--SFGRDLAPRLAARLGAPLVTDVTDL 124 (164)
T ss_dssp ---HT-SEEEEESS--HHHHHHHHHHHHHHT-EEEEEEEEE
T ss_pred ---cCCCEEEEcCc--CCCCcHHHHHHHHhCCCccceEEEE
Confidence 78999888773 2222334444556688988765543
No 222
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=48.11 E-value=1.1e+02 Score=28.87 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred CEEEEEEe--cCC---ChHHHHHHHHHcCCCcEEEecC-CCCcchHHHHHHcCCEEEEcccCC-------CCCCCcHHHH
Q 011690 322 RLLFIITG--KGP---DKESYEEKIRRLRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVV 388 (479)
Q Consensus 322 ~~~l~IvG--~G~---~~~~l~~~~~~~~l~~V~f~G~-~~~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~~ll 388 (479)
+.++.++. .++ ..+.+.+..+++|...+.+.-. -.+.+++.+.+.+||+.+++-... .+.++-..+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~ 108 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAIL 108 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHH
Confidence 34555554 333 2345666667777754444321 023578999999999999863221 1111334678
Q ss_pred HHHhCCCcEEEecCccc
Q 011690 389 DMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 389 Eama~G~PVIas~~~~~ 405 (479)
+....|+|++.++.|.+
T Consensus 109 ~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 109 KRVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHHcCCeEEEcCHHHH
Confidence 88889999999987764
No 223
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=47.99 E-value=2.1e+02 Score=26.64 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=24.5
Q ss_pred CCcceEEEEEe-cCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011690 2 GRRGRACVVVL-GDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (479)
Q Consensus 2 ~~~~~~~i~~~-~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~ 42 (479)
.++|++.|... +..|-+.-....|..+++. |++|.+|-..
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 34455554432 2333344556678888885 9999998543
No 224
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=47.02 E-value=77 Score=33.33 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=50.9
Q ss_pred CEEEEEEecCCChHHHHHHHH----------HcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHH
Q 011690 322 RLLFIITGKGPDKESYEEKIR----------RLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF 391 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~----------~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEam 391 (479)
.+.+.|.+ |.-...+..... +.|-=.|.++.+ ++++++.++|-+||+-++ +||+ +.+=|.
T Consensus 210 pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF-~~Q~~yD~LLw~cD~NfV-----RGED---SfVRAq 279 (374)
T PF10093_consen 210 PVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPF-VPQDDYDRLLWACDFNFV-----RGED---SFVRAQ 279 (374)
T ss_pred CeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCC-CCHHHHHHHHHhCccceE-----ecch---HHHHHH
Confidence 36666665 554555543332 111125788887 999999999999999886 6664 579999
Q ss_pred hCCCcEEEecCc
Q 011690 392 GCGLPVCAVSYS 403 (479)
Q Consensus 392 a~G~PVIas~~~ 403 (479)
-+|+|.|=.-+.
T Consensus 280 wAgkPFvWhIYp 291 (374)
T PF10093_consen 280 WAGKPFVWHIYP 291 (374)
T ss_pred HhCCCceEecCc
Confidence 999999976543
No 225
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=45.60 E-value=1.6e+02 Score=28.64 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=14.7
Q ss_pred HHHHHhhCCCcEEEEecCCC
Q 011690 25 ALSLARQMSLEVDVVAYGGS 44 (479)
Q Consensus 25 a~~La~~~G~eV~Vv~~~~~ 44 (479)
+..++++ |++|+|+|...+
T Consensus 31 la~~~~~-G~~V~v~~lT~G 49 (237)
T COG2120 31 LAKLAAR-GVEVTVVCLTLG 49 (237)
T ss_pred HHHHHHC-CCeEEEEEccCC
Confidence 4566786 999999997644
No 226
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=45.11 E-value=73 Score=31.86 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred EEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCCCc------------ccccCCCCeEEEEeecCCCCCCCCCchh
Q 011690 8 CVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPH------------AAILEHPSIHIHTMTQWPTIPRGLPKVL 75 (479)
Q Consensus 8 ~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~------------~~~~~~~gi~i~~~~~~~~~~~~~~~~~ 75 (479)
-|.-.+..|-|.-+...+..+.++ |+.|-|++..++.+. .....++|+-+..++ .. -.+..+.
T Consensus 33 GiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--tR--G~lGGls 107 (266)
T PF03308_consen 33 GITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--TR--GSLGGLS 107 (266)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-------SSHHHHH
T ss_pred EeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--cC--CCCCCcc
Confidence 333334344445555667777775 999999997655321 122346899999998 21 1122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCch
Q 011690 76 KPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (479)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~~ 138 (479)
+......+.+.. ..+|+|++.+ +...-.-.-......+-+++..-+.+
T Consensus 108 ~~t~~~v~ll~a------------aG~D~IiiET---VGvGQsE~~I~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 108 RATRDAVRLLDA------------AGFDVIIIET---VGVGQSEVDIADMADTVVLVLVPGLG 155 (266)
T ss_dssp HHHHHHHHHHHH------------TT-SEEEEEE---ESSSTHHHHHHTTSSEEEEEEESSTC
T ss_pred HhHHHHHHHHHH------------cCCCEEEEeC---CCCCccHHHHHHhcCeEEEEecCCCc
Confidence 333333333332 7899999998 43222222334455555555444444
No 227
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.70 E-value=1.6e+02 Score=28.21 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred CCCEEEEEEecCC---ChHHHHHHHHHcCCCcEEEecCC----CCcchHHHHHHcCCEEEEcccCC-------CCCCCcH
Q 011690 320 YPRLLFIITGKGP---DKESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLPM 385 (479)
Q Consensus 320 ~p~~~l~IvG~G~---~~~~l~~~~~~~~l~~V~f~G~~----~~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~ 385 (479)
.+++.++=+..+. ..+.+.+..+++|...+.++-.. -+.+++.+.+.+||+.++.-... .+-++-.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~ 108 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLD 108 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHH
Confidence 3445444444432 23456666777787666665431 03456788999999998852211 2222344
Q ss_pred HHHHHHhCCCcEEEecCccc
Q 011690 386 KVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 386 ~llEama~G~PVIas~~~~~ 405 (479)
.+-++...|.|++.++.|.+
T Consensus 109 ~l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 109 ALRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred HHHHHHHcCCEEEEccHHHH
Confidence 67777889999999986664
No 228
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.59 E-value=2.5e+02 Score=27.97 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=49.0
Q ss_pred HHHHHHHcCC--Cc-EEEecCCCCcchHHHHHHcCCEEEEcccCCCCC-CCcHHHHHHHhCCCcEEEecCc
Q 011690 337 YEEKIRRLRL--KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYS 403 (479)
Q Consensus 337 l~~~~~~~~l--~~-V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e-~~p~~llEama~G~PVIas~~~ 403 (479)
-.+.+.++++ .+ |...|+ .+.++=..++.+..+-++-+..|.+. +..-|+-=|..+|+|||.-.-+
T Consensus 162 ~~~~~~~~~~p~~~Iia~~GP-fs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 162 VLAKCEDLGVPPARIIAMRGP-FSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHhcCCChhhEEEecCC-cChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 3445667777 23 667788 88888888888776655445556445 6778999999999999998776
No 229
>PRK10494 hypothetical protein; Provisional
Probab=43.29 E-value=1.6e+02 Score=29.18 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCCEEEEEEecC------CChHHHHHHHHHcCCC--cEEEecCCCCcc------hHHHHHHcCCEEEEcccCCCCCCCcH
Q 011690 320 YPRLLFIITGKG------PDKESYEEKIRRLRLK--RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPM 385 (479)
Q Consensus 320 ~p~~~l~IvG~G------~~~~~l~~~~~~~~l~--~V~f~G~~~~~~------~~~~~l~~adi~v~p~~~s~~e~~p~ 385 (479)
+|..++++.|.. ++.+..++.+.++|++ +|...+. +.+ ...+++....+.++. +..-+|.
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~--s~nT~eNa~~~~~~~~~~~iiLVT----sa~Hm~R 192 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDL--PKDTEEEAAAVKQAIGDAPFLLVT----SASHLPR 192 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCC--CCCHHHHHHHHHHHhCCCCEEEEC----CHHHHHH
Confidence 678899999842 1234566777888983 4666543 222 344455555577764 2333788
Q ss_pred HHHHHHhCCCcEEEecCcc
Q 011690 386 KVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 386 ~llEama~G~PVIas~~~~ 404 (479)
+....-..|..|+....+-
T Consensus 193 A~~~f~~~Gl~v~p~Ptd~ 211 (259)
T PRK10494 193 AMIFFQQEGLNPLPAPANQ 211 (259)
T ss_pred HHHHHHHcCCceeecCCcc
Confidence 8888888999999876543
No 230
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=43.05 E-value=4.3e+02 Score=27.90 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=56.3
Q ss_pred cchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhc---------cccCccEEEeCCHHHHHHHH
Q 011690 358 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL---------VKVDKNGLLFSSSSELADQL 428 (479)
Q Consensus 358 ~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~---------i~~~~~G~l~~~~~~la~~l 428 (479)
..++..++..+|++|.= .+.+.+|+|...+||+....-. .++ .+...-|-++.+.+++.++|
T Consensus 277 ~~di~dll~~sDiLITD--------ySSv~fdf~~l~KPiify~~D~-~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai 347 (388)
T COG1887 277 NADINDLLLVSDILITD--------YSSVIFDFMLLDKPIIFYTYDL-EQYDELRGFYLDYKFEAPGEVVETQEELIDAI 347 (388)
T ss_pred chhHHHHHhhhCEEEee--------chHHHHHHHHhcCcEEEEecCh-HHHHhhhhhhhhHHhcCCccccccHHHHHHHH
Confidence 58999999999999941 3338999999999999883221 111 12233466677788899988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Q 011690 429 LMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 429 ~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
...... .....++++....+
T Consensus 348 ~~~~~~---~~~~~~k~~~~~~~ 367 (388)
T COG1887 348 KPYDED---GNYDLEKLRVFNDK 367 (388)
T ss_pred Hhhhcc---cchhHHHHHHHHHh
Confidence 888774 34445555555554
No 231
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=42.95 E-value=2.9e+02 Score=28.14 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=72.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC--CChHHHHHH----
Q 011690 267 VVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG--PDKESYEEK---- 340 (479)
Q Consensus 267 i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G--~~~~~l~~~---- 340 (479)
=.++||++..||+..+++...+..+ -++.+-++-|=. +..-.+.+.
T Consensus 186 ~~yigR~Tt~kG~~~mfD~h~~~lK----------------------------~~~~~t~~~GierS~A~~~i~d~~~~~ 237 (355)
T PF11440_consen 186 NRYIGRQTTWKGPRRMFDLHEKILK----------------------------PAGFKTIMEGIERSPAKISIKDHGIPY 237 (355)
T ss_dssp EEEE--SSGGG-HHHHHHHHHHTTT----------------------------TTT-EEEEE---SSTHHHHHHHTT--E
T ss_pred ceeeeeeeeecCcHHHhhhHHHhcC----------------------------CcchhHHhhhhhcCCceeeeecCCccc
Confidence 3699999999999999998776542 467888888822 212222221
Q ss_pred -------HHHcCC-C--cEEEecCCCCcchHHHHHHcCCEEEEcccCC---CCCCCcHHHHHHHhCCC-cEEEecCccch
Q 011690 341 -------IRRLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMFGCGL-PVCAVSYSCIE 406 (479)
Q Consensus 341 -------~~~~~l-~--~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s---~~e~~p~~llEama~G~-PVIas~~~~~~ 406 (479)
+.+..+ + -+-.+|+ .=+++..+.++.+-.++-.+... ..+.+--+-+|..|||. ||--.+.|..-
T Consensus 238 ~y~~~~~~~~~~~~pN~~~~v~~~-Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~ 316 (355)
T PF11440_consen 238 EYYPKLDCDEPKPAPNSPVPVYGP-YIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENN 316 (355)
T ss_dssp EEE-CTGGGG---SSS--EEEESS---HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHS
T ss_pred ccCccccccCcccCCCCcceecch-hhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccc
Confidence 112222 2 3888898 55778888888877766542211 12235558999999998 66666555533
Q ss_pred h-------ccccCccEEEe---CCHHHHHHHHHHHHh
Q 011690 407 E-------LVKVDKNGLLF---SSSSELADQLLMLFK 433 (479)
Q Consensus 407 e-------~i~~~~~G~l~---~~~~~la~~l~~l~~ 433 (479)
. ++.+. .|.+. +|.++-.+.|.++.+
T Consensus 317 r~~~D~~~~~~~~-~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 317 RFTLDGTRYIDHP-YSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp B-TTTSSBGGSS---S-EEE-TTSHHHHHHHHHHHHT
T ss_pred eeeecCceeeccC-cceeEeccchHHHHHHHHHHHhc
Confidence 2 33333 34444 445666666666554
No 232
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=42.72 E-value=1.8e+02 Score=26.43 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec-Cccchhccc
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVK 410 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~-~~~~~e~i~ 410 (479)
..+.|+ --.+++..++..|.|++. ..|+ | +++.++..++|.|... ..-..|+++
T Consensus 48 l~v~~F-~~~~kiQsli~darIVIS----HaG~--G-SIL~~~rl~kplIv~pr~s~y~elvD 102 (161)
T COG5017 48 LRVYGF-DKEEKIQSLIHDARIVIS----HAGE--G-SILLLLRLDKPLIVVPRSSQYQELVD 102 (161)
T ss_pred cEEEee-chHHHHHHHhhcceEEEe----ccCc--c-hHHHHhhcCCcEEEEECchhHHHhhh
Confidence 566776 668899999999998774 2333 2 7999999999977664 443555553
No 233
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.53 E-value=1.4e+02 Score=30.13 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=32.9
Q ss_pred CcceEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
+++|+.|+++|+ ..-++......... .+++|.++...... .....+..||+++.++
T Consensus 88 ~~~ri~vl~Sg~---gsnl~al~~~~~~~~~~~~i~~visn~~~-~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 88 ERKRVVILVSKE---DHCLGDLLWRWRSGELPVEIAAVISNHDD-LRSLVERFGIPFHHVP 144 (286)
T ss_pred cCcEEEEEEcCC---CCCHHHHHHHHHcCCCCcEEEEEEEcChh-HHHHHHHhCCCEEEec
Confidence 456777777765 23444333333332 35787777655432 2344567799999887
No 234
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=41.39 E-value=74 Score=31.44 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=52.9
Q ss_pred HcCC--Cc-EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeC
Q 011690 343 RLRL--KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 419 (479)
Q Consensus 343 ~~~l--~~-V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~ 419 (479)
++|+ .+ |...|+ .+.+.=.+++++..+-++-...|.+.|+..|+-=|..+|+|||.-.-+..+.-. -.++
T Consensus 166 ~~g~~~~~iia~~GP-fs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~------~~~~ 238 (249)
T PF02571_consen 166 ALGFPPKNIIAMQGP-FSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPYGD------PVVE 238 (249)
T ss_pred cCCCChhhEEEEeCC-CCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCC------cccC
Confidence 5565 23 666676 777777777777655444344554457888999999999999999877654211 1156
Q ss_pred CHHHHHHHH
Q 011690 420 SSSELADQL 428 (479)
Q Consensus 420 ~~~~la~~l 428 (479)
+.+++-+.+
T Consensus 239 ~~~e~l~~l 247 (249)
T PF02571_consen 239 TIEELLDWL 247 (249)
T ss_pred CHHHHHHHH
Confidence 666666554
No 235
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=41.35 E-value=1e+02 Score=31.45 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC-------CCcchHHHHHHcCCEEEE--cccCCCCCCCcHHHHHHH
Q 011690 321 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-------LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMF 391 (479)
Q Consensus 321 p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~-------~~~~~~~~~l~~adi~v~--p~~~s~~e~~p~~llEam 391 (479)
.+-++-|+|-|.-...+-+.++..|. +|....+. +...++.++++.||++++ |.+.+...=+....++.|
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 35689999999877777777777664 45554421 123478999999999876 333332222788999999
Q ss_pred hCCCcEEEecCccc------hhccccCccE
Q 011690 392 GCGLPVCAVSYSCI------EELVKVDKNG 415 (479)
Q Consensus 392 a~G~PVIas~~~~~------~e~i~~~~~G 415 (479)
--|.-+|-+.-|++ -+.++.+.-+
T Consensus 223 k~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 223 KDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred CCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 98888888876653 2444555544
No 236
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=40.73 E-value=2.4e+02 Score=29.22 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcCCCcEEEecCC-----CCcchHHHHHHcCCEEEEcccCCCCCC-CcHHHHHHHhCCC-cEEEec-Cccc
Q 011690 334 KESYEEKIRRLRLKRVAFRTMW-----LSAEDYPLLLGSADLGVCLHTSSSGLD-LPMKVVDMFGCGL-PVCAVS-YSCI 405 (479)
Q Consensus 334 ~~~l~~~~~~~~l~~V~f~G~~-----~~~~~~~~~l~~adi~v~p~~~s~~e~-~p~~llEama~G~-PVIas~-~~~~ 405 (479)
+..+.+...+. -.|...|.+ .+.++...+++.....++. ..+.-.+ +--|+.+|+..|+ ||+... ....
T Consensus 191 R~~~~~~L~~~--~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~laf-ENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~ 267 (349)
T PF00852_consen 191 REEYVRELSKY--IPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAF-ENSNCPDYITEKFWNALLAGTVPIYWGPPRPNY 267 (349)
T ss_dssp HHHHHHHHHTT--S-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE--SS--TT---HHHHHHHHTTSEEEEES---TTH
T ss_pred HHHHHHHHHhh--cCeEccCCCCCCCCcccccccccccCcEEEEEe-cCCCCCCCCCHHHHHHHHCCeEEEEECCEeccc
Confidence 44444443333 358888874 2345678899998888875 3332222 3459999999998 666553 4556
Q ss_pred hhccccCccEEEe---CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011690 406 EELVKVDKNGLLF---SSSSELADQLLMLFKGFPDDSDVLKKLRN 447 (479)
Q Consensus 406 ~e~i~~~~~G~l~---~~~~~la~~l~~l~~~~~~~~~~~~~~~~ 447 (479)
.+++-. +.-+-+ +++++||+-|..|-+ |++...+.-+
T Consensus 268 ~~~~P~-~SfI~~~df~s~~~La~yl~~l~~----n~~~Y~~yf~ 307 (349)
T PF00852_consen 268 EEFAPP-NSFIHVDDFKSPKELADYLKYLDK----NDELYNKYFE 307 (349)
T ss_dssp HHHS-G-GGSEEGGGSSSHHHHHHHHHHHHT-----HHHHH----
T ss_pred ccCCCC-CCccchhcCCCHHHHHHHHHHHhc----CHHHHhhhcc
Confidence 666643 333333 579999999999998 4776665533
No 237
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.07 E-value=3.8e+02 Score=26.46 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=53.6
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCC--EEEEcccCCCCC--CCcHHHHHHHh-----CCCcEEEec-Cc
Q 011690 334 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD--LGVCLHTSSSGL--DLPMKVVDMFG-----CGLPVCAVS-YS 403 (479)
Q Consensus 334 ~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~ad--i~v~p~~~s~~e--~~p~~llEama-----~G~PVIas~-~~ 403 (479)
.+.+.+.++++|++.+.+..+--+.+.+..+.+.++ ++++...-..|. .++..+.|.+. .++||++-- ..
T Consensus 129 ~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~ 208 (256)
T TIGR00262 129 SGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGIS 208 (256)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCC
Confidence 456677888899988878776234567888999998 444432111333 24444555443 578877632 11
Q ss_pred ---cchhccccCccEEEeCC
Q 011690 404 ---CIEELVKVDKNGLLFSS 420 (479)
Q Consensus 404 ---~~~e~i~~~~~G~l~~~ 420 (479)
....+.+.|-+|+++.+
T Consensus 209 ~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 209 KPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CHHHHHHHHHcCCCEEEECH
Confidence 13455666688999875
No 238
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=40.07 E-value=88 Score=30.13 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred EEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC-----CCCCCc-----HHHHHHHh
Q 011690 323 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-----SGLDLP-----MKVVDMFG 392 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-----~~e~~p-----~~llEama 392 (479)
=+-++++.+....-.++..++++ |.+... ....||+.++|..+. -..|.+ ..+++++.
T Consensus 21 ~k~i~~~~~~~~~i~e~~~~~~~---i~~~~~---------~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL 88 (207)
T TIGR02536 21 KKYIVALGDSKHAIPEEMLKEFD---VSWVTS---------EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLL 88 (207)
T ss_pred CceEEEecCCchhhHHHHHhhcc---eeecch---------hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444444434444455555542 333222 566999999985442 112233 68999999
Q ss_pred CCCcEEEecC
Q 011690 393 CGLPVCAVSY 402 (479)
Q Consensus 393 ~G~PVIas~~ 402 (479)
.|+||++...
T Consensus 89 ~GK~V~v~~e 98 (207)
T TIGR02536 89 EGKPIYILKP 98 (207)
T ss_pred CCCeEEEEec
Confidence 9999999863
No 239
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=39.86 E-value=1.1e+02 Score=31.97 Aligned_cols=106 Identities=9% Similarity=0.033 Sum_probs=64.6
Q ss_pred EEEEEEecCCChHHHHHHHHHc---CCC----cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCC-
Q 011690 323 LLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG- 394 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~---~l~----~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G- 394 (479)
-.+.|++.|.......+.++.+ |++ ++.++-+ ++.+.+.+.++.++..++.......-|++..+.|.++-.
T Consensus 234 ~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~P-ld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~ 312 (355)
T PTZ00182 234 KDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRP-WDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDC 312 (355)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCC-CCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhh
Confidence 4667777777666666665554 442 4556666 788888999999988877644445557888888888664
Q ss_pred -----CcEEEecCccchhccccCc--cEEEeCCHHHHHHHHHHH
Q 011690 395 -----LPVCAVSYSCIEELVKVDK--NGLLFSSSSELADQLLML 431 (479)
Q Consensus 395 -----~PVIas~~~~~~e~i~~~~--~G~l~~~~~~la~~l~~l 431 (479)
.|+.--...+ ..+-... -..+..+++.+.+++..+
T Consensus 313 ~~~l~~pv~ri~~~d--~~~p~~~~le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 313 FLYLEAPIKRVCGAD--TPFPYAKNLEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred hhhcCCCeEEeCCCC--ccCCCChHHHHHhCCCHHHHHHHHHHh
Confidence 3654332211 1221111 122236677777777655
No 240
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=39.53 E-value=92 Score=30.77 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=52.1
Q ss_pred EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHHHHHHHH
Q 011690 349 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQL 428 (479)
Q Consensus 349 V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~la~~l 428 (479)
|...|+ .+.+.=..+++..++-++-...|.+.|+..|+--|+.+|+|||.-.-+..+ + ..-.+.+.+++-+.+
T Consensus 171 iam~gP-fs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-----~-~~~~~~~~~e~~~~l 243 (248)
T PRK08057 171 IALRGP-FSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALP-----Y-ADREFEDVAELVAWL 243 (248)
T ss_pred EEeeCC-CCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-----C-CCcccCCHHHHHHHH
Confidence 566676 777766777776666444334454447888999999999999999877532 1 114457778777776
Q ss_pred HHHH
Q 011690 429 LMLF 432 (479)
Q Consensus 429 ~~l~ 432 (479)
.+.+
T Consensus 244 ~~~~ 247 (248)
T PRK08057 244 RHLL 247 (248)
T ss_pred HHhh
Confidence 6543
No 241
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=38.54 E-value=4.1e+02 Score=26.44 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcc-cCC-CC--CCCcHHHHHHH-----hCCCcEEEec-C
Q 011690 333 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLH-TSS-SG--LDLPMKVVDMF-----GCGLPVCAVS-Y 402 (479)
Q Consensus 333 ~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~-~~s-~~--e~~p~~llEam-----a~G~PVIas~-~ 402 (479)
+.+.+.+.+++.|++.|.|..+--+.+.+..+.+.++-||... ... .| ..++..+-|.. .+.+||++-= .
T Consensus 128 e~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI 207 (259)
T PF00290_consen 128 ESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGI 207 (259)
T ss_dssp GHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCC
Confidence 4567788888999999999887345666777777777666531 111 22 23555455443 2489988763 2
Q ss_pred c--c-chhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 011690 403 S--C-IEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 452 (479)
Q Consensus 403 ~--~-~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~~ 452 (479)
. . ..++. .+-+|.+++| ++.+.+.+-.++ ..+..+++.+.++++
T Consensus 208 ~~~e~~~~~~-~~aDGvIVGS--a~v~~i~~~~~~---~~~~~~~~~~~~~~l 254 (259)
T PF00290_consen 208 STPEQAKKLA-AGADGVIVGS--AFVKIIEENGDD---AEKFLKELKEFVREL 254 (259)
T ss_dssp -SHHHHHHHH-TTSSEEEESH--HHHHHHHHTCCH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-ccCCEEEECH--HHHHHHHHcccc---HHHHHHHHHHHHHHH
Confidence 2 2 33444 7889999975 233333331111 234445555655554
No 242
>PRK06932 glycerate dehydrogenase; Provisional
Probab=38.36 E-value=95 Score=31.66 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=58.2
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC------CCcchHHHHHHcCCEEEE--cccCC-CCCCCcHHHHHHHh
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------LSAEDYPLLLGSADLGVC--LHTSS-SGLDLPMKVVDMFG 392 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~------~~~~~~~~~l~~adi~v~--p~~~s-~~e~~p~~llEama 392 (479)
+-++-|+|-|.....+-+.++..|. +|....+. ....++.++++.||++++ |.+.+ .+. +....++.|-
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~l-i~~~~l~~mk 224 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNL-INAETLALMK 224 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcc-cCHHHHHhCC
Confidence 4689999999887777777777765 45554430 012367899999999876 33333 333 7789999999
Q ss_pred CCCcEEEecCcc
Q 011690 393 CGLPVCAVSYSC 404 (479)
Q Consensus 393 ~G~PVIas~~~~ 404 (479)
-|.-+|-+.-|+
T Consensus 225 ~ga~lIN~aRG~ 236 (314)
T PRK06932 225 PTAFLINTGRGP 236 (314)
T ss_pred CCeEEEECCCcc
Confidence 888888887665
No 243
>PLN02928 oxidoreductase family protein
Probab=38.24 E-value=95 Score=32.16 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred CCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC-----------------------CCcchHHHHHHcCCEEEEc--c
Q 011690 321 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----------------------LSAEDYPLLLGSADLGVCL--H 375 (479)
Q Consensus 321 p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~-----------------------~~~~~~~~~l~~adi~v~p--~ 375 (479)
.+-++.|+|-|.....+-+.++.+|. +|....+- .+..++.++++.||++++- .
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPl 236 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCC
Confidence 45689999999887777777777775 55554320 1234678999999998873 2
Q ss_pred cCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 376 TSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 376 ~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
+.+...=+....++.|--|.-+|-+.-|+
T Consensus 237 t~~T~~li~~~~l~~Mk~ga~lINvaRG~ 265 (347)
T PLN02928 237 TKETAGIVNDEFLSSMKKGALLVNIARGG 265 (347)
T ss_pred ChHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence 23322225678888888887777776554
No 244
>PLN00203 glutamyl-tRNA reductase
Probab=38.20 E-value=5.8e+02 Score=28.09 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=52.0
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC------------------CCcchHHHHHHcCCEEEEcccCCCCCCC
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------------------LSAEDYPLLLGSADLGVCLHTSSSGLDL 383 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~------------------~~~~~~~~~l~~adi~v~p~~~s~~e~~ 383 (479)
+-++.|+|-|.....+-+.....|..+|.+..+- .+.++....+..+|+++.. +.+..--+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA-T~s~~pvI 344 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS-TSSETPLF 344 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc-cCCCCCee
Confidence 4689999988766655555555555555554331 1234566778899998874 33322223
Q ss_pred cHHHHHHHhC-----CCcEEEecCccchhc
Q 011690 384 PMKVVDMFGC-----GLPVCAVSYSCIEEL 408 (479)
Q Consensus 384 p~~llEama~-----G~PVIas~~~~~~e~ 408 (479)
....++.+.. |.|.+.-|.+-.+++
T Consensus 345 ~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 345 LKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred CHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 3455565532 579999987766543
No 245
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.05 E-value=2.7e+02 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=21.1
Q ss_pred cCCCCChhHHHHHHHHHhhCCCcEEEEec
Q 011690 13 GDLGRSPRMQYQALSLARQMSLEVDVVAY 41 (479)
Q Consensus 13 ~~~g~~~r~~~~a~~La~~~G~eV~Vv~~ 41 (479)
+..|.|.-..+.|..+|+. |.+|-++=.
T Consensus 67 gGvGKStva~nLA~alA~~-G~rVlliDa 94 (265)
T COG0489 67 GGVGKSTVAVNLAAALAQL-GKRVLLLDA 94 (265)
T ss_pred CCCcHHHHHHHHHHHHHhc-CCcEEEEeC
Confidence 3445566677889999995 999999943
No 246
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=37.53 E-value=3.3e+02 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecC
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHN 136 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~ 136 (479)
.++|+|++.+||.........++...-++=+|+.++.
T Consensus 211 ~~yD~ViiD~pp~~~~~d~~~~~~~~d~vilV~~~~~ 247 (274)
T TIGR03029 211 GDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNE 247 (274)
T ss_pred hcCCEEEEeCCCcccccHHHHHHHhCCeEEEEEECCC
Confidence 6899999999987554444434443334444445543
No 247
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=37.46 E-value=2.1e+02 Score=28.91 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=26.3
Q ss_pred hHHHHHH--cCCEEEEcccCCCCCCCcHHHHHHHh--CCCcEEEe
Q 011690 360 DYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG--CGLPVCAV 400 (479)
Q Consensus 360 ~~~~~l~--~adi~v~p~~~s~~e~~p~~llEama--~G~PVIas 400 (479)
++.+.+. .+|++|=.++ .+--|...+++.|+ |..|||..
T Consensus 96 ~L~e~i~~v~ptvlIG~S~--~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 96 SLLEVVKAVKPTVLIGLSG--VGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CHHHHHHhcCCCEEEEeCC--CCCCCCHHHHHHHHhcCCCCEEEE
Confidence 4566666 6788886522 22237788999998 57788766
No 248
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.14 E-value=2.6e+02 Score=26.65 Aligned_cols=34 Identities=26% Similarity=0.173 Sum_probs=21.0
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011690 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (479)
Q Consensus 10 ~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~ 43 (479)
|++|.-|..+.|.+....|.+...-.-.|++..+
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD 76 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTD 76 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCc
Confidence 4556667788999888888665222344444433
No 249
>PRK09358 adenosine deaminase; Provisional
Probab=37.06 E-value=4.6e+02 Score=26.59 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=60.6
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCC-cchHHHHHHcCCEEE--EcccCC-CCC--CCc-HHHHHHHhCC
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-AEDYPLLLGSADLGV--CLHTSS-SGL--DLP-MKVVDMFGCG 394 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~-~~~~~~~l~~adi~v--~p~~~s-~~e--~~p-~~llEama~G 394 (479)
.+.+.+ |.....+...+.+..+|.+++ -.|.|+. .++..++++...+.| ||...- .+. +++ ..+-+++..|
T Consensus 197 ~~~~H~-~E~~~~~~~~~al~~lg~~ri-~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~G 274 (340)
T PRK09358 197 RLTAHA-GEAGGPESIWEALDELGAERI-GHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVPSLAEHPLKTLLDAG 274 (340)
T ss_pred CeEEcC-CCCCchhHHHHHHHHcCCccc-chhhhhccCHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCC
Confidence 355555 333233445555555676554 3455564 356888899998875 662110 111 011 2578899999
Q ss_pred CcEEEe-cCccchhccccCccEEEeCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 395 LPVCAV-SYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 395 ~PVIas-~~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
+||... |.++.. + .+ +.+.+..+...+.-+.+++..+..|+.+
T Consensus 275 v~v~lgTD~~~~~--------~---~~---l~~e~~~~~~~~~l~~~el~~l~~nai~ 318 (340)
T PRK09358 275 VRVTINTDDPLVF--------G---TT---LTEEYEALAEAFGLSDEDLAQLARNALE 318 (340)
T ss_pred CEEEECCCCCccc--------C---CC---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 997654 433210 1 12 2233332222222256777888888877
No 250
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=37.06 E-value=3.2e+02 Score=27.45 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=58.8
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCC-cchHHHHHHcCCEEE--EcccCC-CCCC--C-cHHHHHHHhCC
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-AEDYPLLLGSADLGV--CLHTSS-SGLD--L-PMKVVDMFGCG 394 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~-~~~~~~~l~~adi~v--~p~~~s-~~e~--~-p~~llEama~G 394 (479)
.+.+...+.+. .+.+.+.++.+|..++. .|.++. .++..+.++...+.+ ||...- .+.+ . -..+-+++..|
T Consensus 188 ~v~~H~~E~~~-~~~~~~a~~~~g~~~i~-H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~~~G 265 (325)
T cd01320 188 RLTAHAGEAGG-PESVRDALDLLGAERIG-HGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDAG 265 (325)
T ss_pred ceEEeCCCCCC-HHHHHHHHHHcCCcccc-hhhccCccHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCC
Confidence 47777655433 33445555556654432 333343 345788888888877 662111 1111 0 12477899999
Q ss_pred CcEEEecCccchhccccCccEEEeCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 011690 395 LPVCAVSYSCIEELVKVDKNGLLFSS-SSELADQLLMLFKGFPDDSDVLKKLRNGTLE 451 (479)
Q Consensus 395 ~PVIas~~~~~~e~i~~~~~G~l~~~-~~~la~~l~~l~~~~~~~~~~~~~~~~~~~~ 451 (479)
+||..+.-+. ++.-.+ .+++.-+. +.+.. +++++.++..|+.+
T Consensus 266 v~v~lgTD~~----------~~~~~~~~~e~~~~~-~~~~l---~~~el~~~~~na~~ 309 (325)
T cd01320 266 VKVTINTDDP----------TVFGTYLTDEYELLA-EAFGL---TEEELKKLARNAVE 309 (325)
T ss_pred CEEEECCCCC----------cccCCCHHHHHHHHH-HHcCC---CHHHHHHHHHHHHH
Confidence 9976553221 000122 22222222 22222 46667778888876
No 251
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=35.62 E-value=1.3e+02 Score=31.35 Aligned_cols=105 Identities=7% Similarity=-0.056 Sum_probs=64.7
Q ss_pred EEEEEecCCChHHHHHHHHHc---CCC----cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCC--
Q 011690 324 LFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-- 394 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~---~l~----~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G-- 394 (479)
.+.|++.|..-....+.++.+ |++ ++.++-+ ++.+.+.+..+..+..|........-||+..+.|.++-.
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikP-lD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f 308 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRP-LDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESF 308 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCc-cCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhch
Confidence 446666666555555555443 552 3444555 677788899999988877644445557999999988654
Q ss_pred ----CcEEEecCccch----hccccCccEEEeCCHHHHHHHHHHHHh
Q 011690 395 ----LPVCAVSYSCIE----ELVKVDKNGLLFSSSSELADQLLMLFK 433 (479)
Q Consensus 395 ----~PVIas~~~~~~----e~i~~~~~G~l~~~~~~la~~l~~l~~ 433 (479)
.|+.--.....+ ..+ .-+...+++.+.+++.+++.
T Consensus 309 ~~~~~~v~rlg~~d~~~p~~~~l----e~~~~p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 309 DYLDAPVERIAGADVPMPYAANL----ERLALPQVEDIVRAAKRACY 351 (356)
T ss_pred hccCCCeEEeccCCcCCCccHHH----HHhhCCCHHHHHHHHHHHHH
Confidence 355433222211 111 12234678889999988886
No 252
>PRK06487 glycerate dehydrogenase; Provisional
Probab=35.59 E-value=1.1e+02 Score=31.11 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=58.2
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC-----CCcchHHHHHHcCCEEEE--cccCCCCCCCcHHHHHHHhCC
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMFGCG 394 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~-----~~~~~~~~~l~~adi~v~--p~~~s~~e~~p~~llEama~G 394 (479)
+-++-|+|-|.-...+-+.++..|. +|....+. ....++.++++.||++++ |.+.+...=+....++.|--|
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~g 226 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPG 226 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCC
Confidence 4689999999887777777777665 45554431 123468999999999876 333332222778999999988
Q ss_pred CcEEEecCccc
Q 011690 395 LPVCAVSYSCI 405 (479)
Q Consensus 395 ~PVIas~~~~~ 405 (479)
.-+|-+.-|++
T Consensus 227 a~lIN~aRG~v 237 (317)
T PRK06487 227 ALLINTARGGL 237 (317)
T ss_pred eEEEECCCccc
Confidence 88888776653
No 253
>PRK06849 hypothetical protein; Provisional
Probab=35.25 E-value=1.4e+02 Score=31.10 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCCcceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011690 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (479)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~ 43 (479)
|.+++++.|.. ++.+-....+..|.+. ||+|+++....
T Consensus 1 ~~~~~~VLI~G----~~~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITG----ARAPAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeC----CCcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 56666655443 2223445567788885 99999997654
No 254
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=35.07 E-value=63 Score=29.80 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.3
Q ss_pred HHHHc-CCEEEEcc---cCCCCCCCcHHHHHHHhCCCcEEEec
Q 011690 363 LLLGS-ADLGVCLH---TSSSGLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 363 ~~l~~-adi~v~p~---~~s~~e~~p~~llEama~G~PVIas~ 401 (479)
.-+.. +|++|+-- ....|.||-..+.+|++.|+||+++-
T Consensus 88 ~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 88 RALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 33443 79988731 01267778889999999999999884
No 255
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.89 E-value=1e+02 Score=28.43 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=38.5
Q ss_pred CCCEEEEEEecCCC-hHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEc
Q 011690 320 YPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 374 (479)
Q Consensus 320 ~p~~~l~IvG~G~~-~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p 374 (479)
..+-+.+|+|.|.. ...+-+...+.|. +|.+..+ ..+++.+.+..||+++..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r--~~~~l~~~l~~aDiVIsa 94 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS--KTKNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC--CchhHHHHHhhCCEEEEc
Confidence 45679999999975 4435555555554 5777775 457899999999999985
No 256
>PLN02735 carbamoyl-phosphate synthase
Probab=34.31 E-value=9.1e+02 Score=29.30 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=23.5
Q ss_pred cceEEEEEecC--CCCChh---HHHHHHHHHhhCCCcEEEEecCCCC
Q 011690 4 RGRACVVVLGD--LGRSPR---MQYQALSLARQMSLEVDVVAYGGSK 45 (479)
Q Consensus 4 ~~~~~i~~~~~--~g~~~r---~~~~a~~La~~~G~eV~Vv~~~~~~ 45 (479)
++++.|+-.|. +|.+.- ...|+..-++++|+++.++...+..
T Consensus 574 ~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npet 620 (1102)
T PLN02735 574 KKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPET 620 (1102)
T ss_pred CceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 45566555554 222111 1234544455579999999876554
No 257
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=34.07 E-value=4.8e+02 Score=25.85 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcchHHHHHH----cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhccc
Q 011690 335 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 410 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~----~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~i~ 410 (479)
+.+++.++++|++-+.+ .- -+.+++...+. ..|+++++........+...+..+...++||+++. ...++
T Consensus 150 ~~~~~~a~~~g~~l~~~-~v-~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v~ 223 (294)
T PF04392_consen 150 EQLRKAAKKLGIELVEI-PV-PSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS----DFYVK 223 (294)
T ss_dssp HHHHHHHHHTT-EEEEE-EE-SSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS----HHHHC
T ss_pred HHHHHHHHHcCCEEEEE-ec-CcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC----HHHhc
Confidence 45666777777642222 11 23555555544 56887776221111223334556677999999875 35566
Q ss_pred cCccEEEeCCH----HHHHHHHHHHHhc
Q 011690 411 VDKNGLLFSSS----SELADQLLMLFKG 434 (479)
Q Consensus 411 ~~~~G~l~~~~----~~la~~l~~l~~~ 434 (479)
+|.-|-+..|. ...|+...+++++
T Consensus 224 ~Gal~~~~~~~~~~G~~Aa~~a~~IL~G 251 (294)
T PF04392_consen 224 AGALGGYSVDYYEQGRQAAEMAVRILKG 251 (294)
T ss_dssp TT-SEEEE--HHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEccCHHHHHHHHHHHHHHHHCC
Confidence 66555555442 3556667777775
No 258
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.99 E-value=2e+02 Score=27.59 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=40.0
Q ss_pred CCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 320 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 320 ~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
+|+ +++|-|. ..+..++ +.+.|-+-+.=.+. .+++.++-.+.++.++| |.--|.-+.+|+.+|..+
T Consensus 53 ~~~---~~vGAGTVl~~e~a~~-ai~aGA~FivSP~~---~~~vi~~a~~~~i~~iP-----G~~TptEi~~A~~~Ga~~ 120 (201)
T PRK06015 53 VEE---AIVGAGTILNAKQFED-AAKAGSRFIVSPGT---TQELLAAANDSDVPLLP-----GAATPSEVMALREEGYTV 120 (201)
T ss_pred CCC---CEEeeEeCcCHHHHHH-HHHcCCCEEECCCC---CHHHHHHHHHcCCCEeC-----CCCCHHHHHHHHHCCCCE
Confidence 775 5677663 3444443 34445343332333 67777777777887776 444566677777777766
Q ss_pred E
Q 011690 398 C 398 (479)
Q Consensus 398 I 398 (479)
|
T Consensus 121 v 121 (201)
T PRK06015 121 L 121 (201)
T ss_pred E
Confidence 5
No 259
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.78 E-value=3.1e+02 Score=25.77 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhhCCC--cEEEEecCCCC-CcccccCCCCeEEEEee
Q 011690 6 RACVVVLGDLGRSPRMQYQALSLARQMSL--EVDVVAYGGSK-PHAAILEHPSIHIHTMT 62 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~La~~~G~--eV~Vv~~~~~~-~~~~~~~~~gi~i~~~~ 62 (479)
|+.|++.|. +.-.+..+..+.++ ++ +|.+|.+.... .........||+++.+.
T Consensus 2 riail~sg~---gs~~~~ll~~~~~~-~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 2 RIVVLISGN---GSNLQAIIDACKEG-KIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred eEEEEEcCC---ChhHHHHHHHHHcC-CCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 466677643 23444444455553 44 55554444322 22234456789888765
No 260
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.77 E-value=2.7e+02 Score=28.05 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=30.4
Q ss_pred CcceEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
+++|++|+++|. ..-++......... .+++|.+|..+... ........||+++.++
T Consensus 88 ~~~ri~vl~Sg~---g~nl~al~~~~~~~~~~~~i~~visn~~~-~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 88 ARPKVLIMVSKF---DHCLNDLLYRWRIGELPMDIVGVVSNHPD-LEPLAAWHGIPFHHFP 144 (286)
T ss_pred cCceEEEEEcCC---cccHHHHHHHHHcCCCCcEEEEEEECCcc-HHHHHHHhCCCEEEeC
Confidence 445677777662 22333322222221 35787776544332 2244566799998887
No 261
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=33.45 E-value=1.2e+02 Score=22.62 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=39.8
Q ss_pred EEEEEe-cCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEec
Q 011690 324 LFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 324 ~l~IvG-~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~ 401 (479)
.+.+.| .+++++.+++.+..+| -.+.+. ++. ....+|+. ..-+.|.--|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~G---g~~~~~-lt~--------~~THLI~~------~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALG---GKYSKD-LTK--------KTTHLICS------SPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT----EEESS-SST--------T-SEEEEE------S--HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCC---CEEecc-ccC--------CceEEEEe------CCCcHHHHHHHHCCCcEECCC
Confidence 456777 5667889999999887 345555 322 66777764 123459999999999999753
No 262
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=33.37 E-value=91 Score=32.33 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=59.3
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCC-----------cchHHHHHHcCCEEEEc--ccCCCCCCCcHHHH
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVCL--HTSSSGLDLPMKVV 388 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~-----------~~~~~~~l~~adi~v~p--~~~s~~e~~p~~ll 388 (479)
+=++-|+|-|.....+-+..+..+ ..+.+..+|.. .+++.++++.||+.++- .+.....-+-.+++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~ 240 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFI 240 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHH
Confidence 458889998876666666555556 66777776422 23788999999998763 33333333667999
Q ss_pred HHHhCCCcEEEecCccc
Q 011690 389 DMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 389 Eama~G~PVIas~~~~~ 405 (479)
++|--|.-+|-+.-|++
T Consensus 241 ~~mk~g~vlVN~aRG~i 257 (336)
T KOG0069|consen 241 EKMKDGAVLVNTARGAI 257 (336)
T ss_pred HhcCCCeEEEecccccc
Confidence 99999999999987764
No 263
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=33.12 E-value=3.7e+02 Score=25.79 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=46.5
Q ss_pred EEEEEEecCCC-hHHHHHHHHHcCCCcE--EEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 323 LLFIITGKGPD-KESYEEKIRRLRLKRV--AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 323 ~~l~IvG~G~~-~~~l~~~~~~~~l~~V--~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
-.++++|.-+. ...+++.++..|-..| +|+|.-++.-.... +..=|+.++.. ... -..++.||--+|.|+||
T Consensus 68 ~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~-~~~Pdliiv~d--p~~--~~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 68 EKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKG-YIEPDVVVVTD--PRG--DAQAVKEAIEVGIPVVA 142 (204)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhc-cCCCCEEEEEC--Ccc--cHHHHHHHHHhCCCEEE
Confidence 46777786543 3455566666554322 23332133333322 22446666642 122 24599999999999999
Q ss_pred e-cCccchhcc
Q 011690 400 V-SYSCIEELV 409 (479)
Q Consensus 400 s-~~~~~~e~i 409 (479)
- |..+.+..+
T Consensus 143 ivDTn~dp~~V 153 (204)
T PRK04020 143 LCDTDNLTSNV 153 (204)
T ss_pred EEeCCCCcccC
Confidence 7 566666665
No 264
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.07 E-value=1.8e+02 Score=26.94 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCC
Q 011690 277 EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL 356 (479)
Q Consensus 277 K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~ 356 (479)
=++...|+|+..+... .-+.-.++.|+|+. ..+-+.+++.| ..|...|.
T Consensus 89 ~Dv~laIDame~~~~~---------------------------~iD~~vLvSgD~DF-~~Lv~~lre~G-~~V~v~g~-- 137 (160)
T TIGR00288 89 VDVRMAVEAMELIYNP---------------------------NIDAVALVTRDADF-LPVINKAKENG-KETIVIGA-- 137 (160)
T ss_pred ccHHHHHHHHHHhccC---------------------------CCCEEEEEeccHhH-HHHHHHHHHCC-CEEEEEeC--
Confidence 4789999999987432 44677778888764 44455566666 56888884
Q ss_pred CcchHHHHHHcCCEEEEc
Q 011690 357 SAEDYPLLLGSADLGVCL 374 (479)
Q Consensus 357 ~~~~~~~~l~~adi~v~p 374 (479)
+..--..+.++||-|+..
T Consensus 138 ~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 138 EPGFSTALQNSADIAIIL 155 (160)
T ss_pred CCCChHHHHHhcCeEEeC
Confidence 234556789999999865
No 265
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=32.88 E-value=1.7e+02 Score=24.88 Aligned_cols=63 Identities=10% Similarity=0.255 Sum_probs=39.8
Q ss_pred CEEEEEEecC-C--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHH
Q 011690 322 RLLFIITGKG-P--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF 391 (479)
Q Consensus 322 ~~~l~IvG~G-~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEam 391 (479)
.++|+|+-.. + .++.++.+++..+++-+.+ +. .+|+-..+....+.++. -...+|...+++.+
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t---~~eLg~a~Gk~~~~~ia---i~d~g~a~~l~~~~ 98 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YS---KEELGNAIGRDEIKILG---VKDKNMAKKLLKLW 98 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cC---HHHHHHHhCCCCeEEEE---EeChHHHHHHHHHH
Confidence 4777776643 3 2456666667666664444 44 89999999987655543 13345666777665
No 266
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=32.80 E-value=1.2e+02 Score=31.89 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=57.5
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCC-------CCcchHHHHHHcCCEEE--EcccCC-----CCCCCcH
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-------LSAEDYPLLLGSADLGV--CLHTSS-----SGLDLPM 385 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~-------~~~~~~~~~l~~adi~v--~p~~~s-----~~e~~p~ 385 (479)
..+-++-|+|-|.....+.+.++.+|.+ |....+. ....++.++++.||+.+ +|.+.+ .+. +..
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~l-i~~ 191 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHL-ADE 191 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccc-cCH
Confidence 3457999999998888888888888753 4433220 12346889999999998 565543 222 566
Q ss_pred HHHHHHhCCCcEEEecCcc
Q 011690 386 KVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 386 ~llEama~G~PVIas~~~~ 404 (479)
..++.|.-|.-+|-+.-|+
T Consensus 192 ~~l~~mk~gailIN~aRG~ 210 (378)
T PRK15438 192 KLIRSLKPGAILINACRGA 210 (378)
T ss_pred HHHhcCCCCcEEEECCCch
Confidence 8888888887777776555
No 267
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=32.18 E-value=97 Score=26.55 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=11.8
Q ss_pred HHHHHhhCCCcEEEEecCC
Q 011690 25 ALSLARQMSLEVDVVAYGG 43 (479)
Q Consensus 25 a~~La~~~G~eV~Vv~~~~ 43 (479)
...+.++ |++|++++...
T Consensus 18 i~~~~~~-g~~v~vv~~t~ 35 (128)
T PF02585_consen 18 IAKLAEA-GHRVVVVTLTD 35 (128)
T ss_dssp HHHHHHT-T-EEEEEECE-
T ss_pred HHHHHhc-CCeEEEEEecc
Confidence 4566775 99999997654
No 268
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=32.17 E-value=99 Score=30.71 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCC
Q 011690 319 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD 369 (479)
Q Consensus 319 ~~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~ad 369 (479)
..|+..++++|+|++.+ +.|+.++++-+.+- ++.|....+.+-+
T Consensus 227 g~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~----~h~Dl~~l~~aL~ 270 (274)
T TIGR01658 227 GHPKVRFCAIGDGWEEC---TAAQAMNWPFVKID----LHPDSSHRFPGLT 270 (274)
T ss_pred CCCCceEEEeCCChhHH---HHHHhcCCCeEEee----cCCCHHHhCccCC
Confidence 45789999999998543 46677777644432 2455665555443
No 269
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.13 E-value=73 Score=27.32 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=50.9
Q ss_pred EEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC---CCCCCcHHHHHHH-hCCCcEEE
Q 011690 324 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMF-GCGLPVCA 399 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s---~~e~~p~~llEam-a~G~PVIa 399 (479)
+++|+|.|+.--+.-+.++++|++-|.+... .+........||-.++....+ ++.+.. .+++.. ..|+=.+.
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~s~---~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e-~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVNSN---PDTVSTHVDMADEAYFEPPGPSPESYLNIE-AIIDIARKEGADAIH 79 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEEEG---GGTTGHHHHHSSEEEEEESSSGGGTTTSHH-HHHHHHHHTTESEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceeccCc---hhcccccccccccceecCcchhhhhhccHH-HHhhHhhhhcCcccc
Confidence 6789999998888888999999887777766 666777888888766542111 334333 444433 33555555
Q ss_pred ecCccch
Q 011690 400 VSYSCIE 406 (479)
Q Consensus 400 s~~~~~~ 406 (479)
...|...
T Consensus 80 pGyg~ls 86 (110)
T PF00289_consen 80 PGYGFLS 86 (110)
T ss_dssp STSSTTT
T ss_pred cccchhH
Confidence 5555543
No 270
>PRK11519 tyrosine kinase; Provisional
Probab=32.06 E-value=3.6e+02 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEE
Q 011690 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (479)
Q Consensus 100 ~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii 132 (479)
.++|+|++.+||.....-.. .++...+..+++
T Consensus 634 ~~yD~ViiDtpP~~~v~Da~-~l~~~~d~~l~V 665 (719)
T PRK11519 634 KNYDLVLIDTPPILAVTDAA-IVGRHVGTTLMV 665 (719)
T ss_pred hcCCEEEEeCCCcccchHHH-HHHHHCCeEEEE
Confidence 68999999999977654444 344454544444
No 271
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=31.76 E-value=8.6e+02 Score=28.11 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=93.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecC-----CChHHHHH
Q 011690 265 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-----PDKESYEE 339 (479)
Q Consensus 265 ~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G-----~~~~~l~~ 339 (479)
.+++.+-++...||...=+.|+.++.++. +.-.+++.++.+..+ ..-+.++.
T Consensus 277 klilgvD~~d~~kg~~~Kl~a~e~~L~~~-----------------------pe~~~kVvliqi~~~~~~~~~~v~~~k~ 333 (732)
T KOG1050|consen 277 KLILGVDRLDSIKGIQLKLLAFEQFLEEY-----------------------PEWIDKVVLIQIENPKRTDGKEVEELKF 333 (732)
T ss_pred ceEecccccccccCchHHHHHHHHHHHhC-----------------------hhhhceEEEEEEecCCcccchHHHHHHH
Confidence 47888889999999988888888887651 001234556555532 21122222
Q ss_pred H----HHHc----CC---CcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCC----CcEEEecCcc
Q 011690 340 K----IRRL----RL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG----LPVCAVSYSC 404 (479)
Q Consensus 340 ~----~~~~----~l---~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G----~PVIas~~~~ 404 (479)
. +++. +- ..|.++-.-++..++-+++..+|+.++. +...|...+.+|+..|. .+.|.+...|
T Consensus 334 ~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~---s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G 410 (732)
T KOG1050|consen 334 CVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVT---SWRDGMNLVFLEYILCQENKKSVLVLSEFIG 410 (732)
T ss_pred HhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeec---ccccccchhhhHHHHhhcccCCceEEeeecc
Confidence 2 2221 11 2454444348999999999999999876 56666777899998874 6788888777
Q ss_pred chhccccCccEEEe--CCHHHHHHHHHHHHhc
Q 011690 405 IEELVKVDKNGLLF--SSSSELADQLLMLFKG 434 (479)
Q Consensus 405 ~~e~i~~~~~G~l~--~~~~~la~~l~~l~~~ 434 (479)
-.+.++++ ..++ -+.++++..+.+.++.
T Consensus 411 ~~~tl~d~--aivvnpw~~~~~~~~i~~al~~ 440 (732)
T KOG1050|consen 411 DDTTLEDA--AIVVNPWDGDEFAILISKALTM 440 (732)
T ss_pred cccccccc--CEEECCcchHHHHHHHHHHhhc
Confidence 66666332 3333 3478999999999995
No 272
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=31.65 E-value=2.4e+02 Score=28.96 Aligned_cols=108 Identities=10% Similarity=-0.028 Sum_probs=63.8
Q ss_pred EEEEEEecCCChHHHHHHHHHc---CCC----cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCC-
Q 011690 323 LLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG- 394 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~---~l~----~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G- 394 (479)
-.+.|++.|.......+.++.+ |++ ++.++-+ ++.+.+.+.++.++..++.......-|++..+.|.++..
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~P-ld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~ 280 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP-LDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEA 280 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCC-CCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhC
Confidence 3567777776666665555544 442 4555565 778889999999998887644445556888999988754
Q ss_pred -----CcEEEecCccchhccccCc--cEEEeCCHHHHHHHHHHHHh
Q 011690 395 -----LPVCAVSYSCIEELVKVDK--NGLLFSSSSELADQLLMLFK 433 (479)
Q Consensus 395 -----~PVIas~~~~~~e~i~~~~--~G~l~~~~~~la~~l~~l~~ 433 (479)
.|+.-..... ..+..+. .-+-..+.+.+++++.+++.
T Consensus 281 ~~~~~~~i~r~~~~~--~~~~~~~~le~~~l~~~~~I~~~i~~~~~ 324 (327)
T PRK09212 281 FDYLDAPVERVTGKD--VPLPYAANLEKLALPSEEDIIEAVKKVCY 324 (327)
T ss_pred ccccCCCeEEEcCCC--ccCCchHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2444333222 1121110 00111356777777776654
No 273
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=31.62 E-value=2.3e+02 Score=27.61 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=45.4
Q ss_pred CcEEEecCCCCcc---hHHHHHHcCCEEEEcccCCCCCCCc-HHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHH
Q 011690 347 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLP-MKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSS 422 (479)
Q Consensus 347 ~~V~f~G~~~~~~---~~~~~l~~adi~v~p~~~s~~e~~p-~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~ 422 (479)
++|.+.|.-+|.+ .....+..||++|+. .+|... .| ..+.+.+..|.|+|..+.......-.+..+-++..+.+
T Consensus 152 P~Vv~FGE~lp~~~~~~~~~~~~~aDlllvv-GTSl~V-~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~ 229 (235)
T cd01408 152 PDIVFFGESLPSRFFSHMEEDKEEADLLIVI-GTSLKV-APFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCD 229 (235)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEE-CCCCee-ccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHH
Confidence 6788888646653 344567889999985 333222 23 34667777899999888655432111122223336665
Q ss_pred HHH
Q 011690 423 ELA 425 (479)
Q Consensus 423 ~la 425 (479)
++.
T Consensus 230 ~~l 232 (235)
T cd01408 230 DGV 232 (235)
T ss_pred HHH
Confidence 544
No 274
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=31.62 E-value=1.9e+02 Score=27.48 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=47.8
Q ss_pred CEEEEEEecC--CChH---HHHHHHHHc-CCCcEEEecCCCCcchHHHHHHcCCEEEEcccCC-------CCCCCcHHHH
Q 011690 322 RLLFIITGKG--PDKE---SYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVV 388 (479)
Q Consensus 322 ~~~l~IvG~G--~~~~---~l~~~~~~~-~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~~ll 388 (479)
+.++.++... ...+ .+.+..+++ |.+.+.+ -. .+.++..+.+..||+.++|-... ..-++-..+-
T Consensus 31 ~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~-~~-~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~ 108 (212)
T cd03146 31 RPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL-HL-FDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILK 108 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE-ec-cCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHH
Confidence 4566666643 2223 244445555 5532222 22 23567789999999999983211 1112344555
Q ss_pred HHHhCCCcEEEecCccc
Q 011690 389 DMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 389 Eama~G~PVIas~~~~~ 405 (479)
++...|+|++.+..|..
T Consensus 109 ~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 109 AALERGVVYIGWSAGSN 125 (212)
T ss_pred HHHHCCCEEEEECHhHH
Confidence 66778999999987663
No 275
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.75 E-value=3.7e+02 Score=28.27 Aligned_cols=47 Identities=30% Similarity=0.371 Sum_probs=39.6
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCc
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 403 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~ 403 (479)
.|.++.+ ++++++.++|-+||+-++ +||+ +.+-|.-+|+|.|=--++
T Consensus 243 ~~~~LPf-~~Q~~yD~LLW~cD~NfV-----RGED---SFVRAqWAgkPfvWhIYP 289 (371)
T TIGR03837 243 TVAVLPF-VPQDDYDRLLWACDLNFV-----RGED---SFVRAQWAGKPFVWHIYP 289 (371)
T ss_pred EEEEcCC-CChhhHHHHHHhChhcEe-----echh---HHHHHHHcCCCceeeccc
Confidence 4778887 999999999999999886 6764 689999999999876443
No 276
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=30.66 E-value=53 Score=33.06 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCcceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011690 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (479)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~ 43 (479)
|++++++.|..-|.+|-+.-..+.|..|+++ |++|.+|-.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 7888877764223333344556778899996 99999995443
No 277
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.56 E-value=2.4e+02 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHH
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG 366 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~ 366 (479)
.+++.+++.|..+ .+. .+..+++|++.+.-.|. +.+++..++.
T Consensus 79 ~~~i~i~~GG~~~-~~~-~~~~~~~G~d~~~~~~~--~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIP-PED-YELLKEMGVAEIFGPGT--SIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCC-HHH-HHHHHHCCCCEEECCCC--CHHHHHHHHh
Confidence 3466766666554 333 34456788887766664 6777777664
No 278
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.81 E-value=1.5e+02 Score=28.66 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCC
Q 011690 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGS 44 (479)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~ 44 (479)
+++.|+-.|++| .-.++.|+.. ||||.|-+....
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~a-g~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKA-GHEVIIGSSRGP 35 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhC-CCeEEEecCCCh
Confidence 455666556554 2347888996 999999875543
No 279
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.31 E-value=1.7e+02 Score=29.56 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=46.1
Q ss_pred EEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcc-----------hHHHHHHcCCEEEEcccCC------------C
Q 011690 323 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAE-----------DYPLLLGSADLGVCLHTSS------------S 379 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~-----------~~~~~l~~adi~v~p~~~s------------~ 379 (479)
.++.++|....+-.+.+...+.|. .|...|+ +.+ +..+.+..||+.++|...+ .
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~-~v~~~g~--~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGA-KVSLVGF--DQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCC-EEEEEec--cccccccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 578888854433334444444553 3655664 222 3357789999999983321 1
Q ss_pred CCCCcHHHHHHHhCCCcEEEec
Q 011690 380 GLDLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 380 ~e~~p~~llEama~G~PVIas~ 401 (479)
...+....++.|.-|..+++..
T Consensus 80 ~~~~~~~~l~~l~~~~~v~~G~ 101 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIFSGI 101 (296)
T ss_pred CCcchHHHHHhcCCCCEEEEec
Confidence 1122357899999998777654
No 280
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.04 E-value=2.3e+02 Score=28.63 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=31.1
Q ss_pred CcceEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
+++++.|+++|. ..-++......... ...+|.+|..+.... ....+..||+++.++
T Consensus 92 ~~~kiavl~Sg~---g~nl~al~~~~~~~~l~~~i~~visn~~~~-~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 92 QRPKVVIMVSKF---DHCLNDLLYRWRMGELDMDIVGIISNHPDL-QPLAVQHDIPFHHLP 148 (289)
T ss_pred CCeEEEEEEeCC---CccHHHHHHHHHCCCCCcEEEEEEECChhH-HHHHHHcCCCEEEeC
Confidence 456788777764 23344333333332 235666665444322 344556799999887
No 281
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.98 E-value=1.2e+02 Score=28.90 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=33.9
Q ss_pred CCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 320 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 320 ~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
+|+ +++|-|. ..+..++ +.+.|-+-+.=.+. .+++.++-...++.++| |..-|.-+.+|+.+|..+
T Consensus 57 ~p~---~~vGAGTV~~~e~a~~-a~~aGA~FivSP~~---~~~v~~~~~~~~i~~iP-----G~~TptEi~~A~~~G~~~ 124 (196)
T PF01081_consen 57 FPD---LLVGAGTVLTAEQAEA-AIAAGAQFIVSPGF---DPEVIEYAREYGIPYIP-----GVMTPTEIMQALEAGADI 124 (196)
T ss_dssp HTT---SEEEEES--SHHHHHH-HHHHT-SEEEESS-----HHHHHHHHHHTSEEEE-----EESSHHHHHHHHHTT-SE
T ss_pred CCC---CeeEEEeccCHHHHHH-HHHcCCCEEECCCC---CHHHHHHHHHcCCcccC-----CcCCHHHHHHHHHCCCCE
Confidence 777 3456552 3344443 33445443333343 66666666777777666 233444555666666555
Q ss_pred EE
Q 011690 398 CA 399 (479)
Q Consensus 398 Ia 399 (479)
|=
T Consensus 125 vK 126 (196)
T PF01081_consen 125 VK 126 (196)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 282
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.79 E-value=1.9e+02 Score=24.53 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=43.2
Q ss_pred EEEEEecCCChHHHHHHHHHcC-C-CcEEEecCCCCcchHH---HHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEE
Q 011690 324 LFIITGKGPDKESYEEKIRRLR-L-KRVAFRTMWLSAEDYP---LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 398 (479)
Q Consensus 324 ~l~IvG~G~~~~~l~~~~~~~~-l-~~V~f~G~~~~~~~~~---~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVI 398 (479)
++.++|.|......+.....+. + .++.+... .+... ..+..-|++++.+.+......-..+-.|-..|.|||
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi 78 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHP---TEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPII 78 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEccc---chhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEE
Confidence 4678898854433333333321 2 24444432 22222 344667898887433222223334555667799998
Q ss_pred EecCccchhcc
Q 011690 399 AVSYSCIEELV 409 (479)
Q Consensus 399 as~~~~~~e~i 409 (479)
+-.......+.
T Consensus 79 ~iT~~~~s~la 89 (128)
T cd05014 79 AITGNPNSTLA 89 (128)
T ss_pred EEeCCCCCchh
Confidence 87654443444
No 283
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=28.76 E-value=4.4e+02 Score=25.86 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=47.4
Q ss_pred CcEEEecC-CCCcchHHHHHHcCCEEEEcccCCCCC-CCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCHHHH
Q 011690 347 KRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSEL 424 (479)
Q Consensus 347 ~~V~f~G~-~~~~~~~~~~l~~adi~v~p~~~s~~e-~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~~~l 424 (479)
++|.|.|. -++.+++...+..||++|+. .+|... ....-+.+|-..|.|++.-+....... ..-+.++..+.++.
T Consensus 151 P~vV~FGE~~~~~~~~~~~~~~~Dlllvi-GTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~--~~~~~~i~g~~~~~ 227 (242)
T PTZ00408 151 PHIVWFGEMPLYMDEIESVMSKTDLFVAV-GTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNY--SQFDESIYGKASVI 227 (242)
T ss_pred CCEEEcCCCCCcHHHHHHHHHhCCEEEEE-ccCCccccHHHHHHHHHHcCCeEEEECCCCCCCC--ccCCEEEECCHHHH
Confidence 67888887 35667788889999999985 333221 112233567889999988876543211 11233444555544
Q ss_pred HHHH
Q 011690 425 ADQL 428 (479)
Q Consensus 425 a~~l 428 (479)
...|
T Consensus 228 l~~l 231 (242)
T PTZ00408 228 VPAW 231 (242)
T ss_pred HHHH
Confidence 4433
No 284
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=28.70 E-value=1.6e+02 Score=30.19 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=56.3
Q ss_pred CCEEEEEEecCCChHHHHHHHH-HcCCCcEEEecCCC----------CcchHHHHHHcCCEEEE--cccCC-CCCCCcHH
Q 011690 321 PRLLFIITGKGPDKESYEEKIR-RLRLKRVAFRTMWL----------SAEDYPLLLGSADLGVC--LHTSS-SGLDLPMK 386 (479)
Q Consensus 321 p~~~l~IvG~G~~~~~l~~~~~-~~~l~~V~f~G~~~----------~~~~~~~~l~~adi~v~--p~~~s-~~e~~p~~ 386 (479)
.+-++-|+|-|.....+-+.++ .+|. +|.+..+.. ...++.++++.||++++ |.+.+ .+. +...
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~l-i~~~ 221 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHL-FGAE 221 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhc-cCHH
Confidence 3578999999987777777665 4554 466554321 12357889999999776 33333 333 6778
Q ss_pred HHHHHhCCCcEEEecCcc
Q 011690 387 VVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 387 llEama~G~PVIas~~~~ 404 (479)
.++.|--|.-+|-+.-|+
T Consensus 222 ~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHhcCCCCeEEEECCCcc
Confidence 999998888888876665
No 285
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.41 E-value=2.8e+02 Score=26.65 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=36.6
Q ss_pred CCCEEEEEEecCC--ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 320 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 320 ~p~~~l~IvG~G~--~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
+|+ +++|-|. ..++.+ .+.+.|-+-+.-.+. ..++.+.-...++-++| |..-|.-+.+|+.+|..+
T Consensus 64 ~p~---~~IGAGTVl~~~~a~-~a~~aGA~FivsP~~---~~~vi~~a~~~~i~~iP-----G~~TptEi~~a~~~Ga~~ 131 (212)
T PRK05718 64 VPE---ALIGAGTVLNPEQLA-QAIEAGAQFIVSPGL---TPPLLKAAQEGPIPLIP-----GVSTPSELMLGMELGLRT 131 (212)
T ss_pred CCC---CEEEEeeccCHHHHH-HHHHcCCCEEECCCC---CHHHHHHHHHcCCCEeC-----CCCCHHHHHHHHHCCCCE
Confidence 786 3445442 223322 344445444444443 44666666666776665 333455567777777766
Q ss_pred EEe
Q 011690 398 CAV 400 (479)
Q Consensus 398 Ias 400 (479)
|--
T Consensus 132 vKl 134 (212)
T PRK05718 132 FKF 134 (212)
T ss_pred EEE
Confidence 544
No 286
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.13 E-value=5.5e+02 Score=25.57 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 335 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
..+++.++++|+.-+ ... .+..++..+..-+|++-+++... .+++ -+-++-..|+||+.++.
T Consensus 81 ~~l~~~~~~~Gl~~~--te~-~d~~~~~~l~~~vd~~kIga~~~--~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 81 KILKEVGDKYNLPVV--TEV-MDTRDVEEVADYADMLQIGSRNM--QNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHcCCCEE--Eee-CChhhHHHHHHhCCEEEECcccc--cCHH-HHHHHhcCCCcEEEeCC
Confidence 345666777776422 222 44566666666689988873222 2232 34455567999999974
No 287
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=27.97 E-value=1.6e+02 Score=29.05 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=46.0
Q ss_pred EEEEEEec-CCChHHHHHHHHHcCCCcEEEecCC---------------CCcchHHHHHHcCCEEEEcccCCCCCCCcHH
Q 011690 323 LLFIITGK-GPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 386 (479)
Q Consensus 323 ~~l~IvG~-G~~~~~l~~~~~~~~l~~V~f~G~~---------------~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~ 386 (479)
+++.|+|- |..-..+.+.+.+. +++.+.+-+ ...+++.+++..+|+++..+ ........
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t---~p~~~~~~ 76 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT---TPEATLEN 76 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC---CHHHHHHH
Confidence 46778885 76655555555442 223332210 12367777888899988542 22223447
Q ss_pred HHHHHhCCCcEEEecCc
Q 011690 387 VVDMFGCGLPVCAVSYS 403 (479)
Q Consensus 387 llEama~G~PVIas~~~ 403 (479)
+..++..|+|||....|
T Consensus 77 ~~~al~~G~~vvigttG 93 (257)
T PRK00048 77 LEFALEHGKPLVIGTTG 93 (257)
T ss_pred HHHHHHcCCCEEEECCC
Confidence 78899999999976543
No 288
>PRK13243 glyoxylate reductase; Reviewed
Probab=27.78 E-value=1.7e+02 Score=30.02 Aligned_cols=83 Identities=10% Similarity=0.003 Sum_probs=55.7
Q ss_pred CCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCC----------CcchHHHHHHcCCEEEEcc--cCCCCCCCcHHHH
Q 011690 321 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL----------SAEDYPLLLGSADLGVCLH--TSSSGLDLPMKVV 388 (479)
Q Consensus 321 p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~----------~~~~~~~~l~~adi~v~p~--~~s~~e~~p~~ll 388 (479)
.+-++-|+|-|.....+-+.++..|. +|....+.. ...++.++++.||++++-. +.+...-+....+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~ 227 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERL 227 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHH
Confidence 35689999999888787777777765 465554311 1235788999999987732 2221222566788
Q ss_pred HHHhCCCcEEEecCcc
Q 011690 389 DMFGCGLPVCAVSYSC 404 (479)
Q Consensus 389 Eama~G~PVIas~~~~ 404 (479)
++|--|.-+|-+..|+
T Consensus 228 ~~mk~ga~lIN~aRg~ 243 (333)
T PRK13243 228 KLMKPTAILVNTARGK 243 (333)
T ss_pred hcCCCCeEEEECcCch
Confidence 8888887777776555
No 289
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=27.63 E-value=3.8e+02 Score=26.95 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=30.4
Q ss_pred CcceEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
+++++.|+++|. ..-++......... ...+|.++..+..... ...+..||+++.++
T Consensus 83 ~~~ki~vl~Sg~---g~nl~~l~~~~~~g~l~~~i~~visn~~~~~-~~A~~~gIp~~~~~ 139 (280)
T TIGR00655 83 KLKRVAILVSKE---DHCLGDLLWRWYSGELDAEIALVISNHEDLR-SLVERFGIPFHYIP 139 (280)
T ss_pred CCcEEEEEEcCC---ChhHHHHHHHHHcCCCCcEEEEEEEcChhHH-HHHHHhCCCEEEcC
Confidence 456788888764 12333333333222 2246666654443322 34566799998887
No 290
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=26.91 E-value=4.1e+02 Score=26.19 Aligned_cols=77 Identities=4% Similarity=0.075 Sum_probs=48.7
Q ss_pred CCCEEEEEEecC-----CChHHHHHHHHHcCC-C-cEEEecCCCCcchHHHHHHcC------CEEEEcccCCCCCCCcHH
Q 011690 320 YPRLLFIITGKG-----PDKESYEEKIRRLRL-K-RVAFRTMWLSAEDYPLLLGSA------DLGVCLHTSSSGLDLPMK 386 (479)
Q Consensus 320 ~p~~~l~IvG~G-----~~~~~l~~~~~~~~l-~-~V~f~G~~~~~~~~~~~l~~a------di~v~p~~~s~~e~~p~~ 386 (479)
.+.-++++-|+. ++.+.+++.+.++|+ + .|..-. -+..-......+. ++.|+ ++..-+|.+
T Consensus 80 gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~--~s~nT~en~~~a~~i~~~~~~iIV----Tq~fHm~RA 153 (239)
T PRK10834 80 GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY--AGFRTLDSIVRTRKVFDTNDFIII----TQRFHCERA 153 (239)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC--CCCCHHHHHHHHHHHhCCCCEEEE----CCHHHHHHH
Confidence 555678888853 233556777888899 3 444433 3444444444444 35555 344448999
Q ss_pred HHHHHhCCCcEEEecC
Q 011690 387 VVDMFGCGLPVCAVSY 402 (479)
Q Consensus 387 llEama~G~PVIas~~ 402 (479)
++-+-..|..+++...
T Consensus 154 ~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 154 LFIALHMGIQAQCYAV 169 (239)
T ss_pred HHHHHHcCCceEEEeC
Confidence 9999999999877753
No 291
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=26.70 E-value=1.8e+02 Score=21.85 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=44.9
Q ss_pred CCCCEEEEEEe-cCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 319 LYPRLLFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 319 ~~p~~~l~IvG-~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
-+.+..|.|.| ....++.+++.++++|- .+... +-...+.+|+... ..-..+...+.+.|+|+
T Consensus 5 ~F~g~~f~i~~~~~~~~~~l~~~i~~~GG---~v~~~---------~~~~~thvI~~~~----~~~~~k~~~~~~~~i~i 68 (78)
T PF00533_consen 5 IFEGCTFCISGFDSDEREELEQLIKKHGG---TVSNS---------FSKKTTHVIVGNP----NKRTKKYKAAIANGIPI 68 (78)
T ss_dssp TTTTEEEEESSTSSSHHHHHHHHHHHTTE---EEESS---------SSTTSSEEEESSS----HCCCHHHHHHHHTTSEE
T ss_pred CCCCEEEEEccCCCCCHHHHHHHHHHcCC---EEEee---------cccCcEEEEeCCC----CCccHHHHHHHHCCCeE
Confidence 46788999944 34567889999999872 12222 2346777776422 11234899999999999
Q ss_pred EEec
Q 011690 398 CAVS 401 (479)
Q Consensus 398 Ias~ 401 (479)
|..+
T Consensus 69 V~~~ 72 (78)
T PF00533_consen 69 VSPD 72 (78)
T ss_dssp EETH
T ss_pred ecHH
Confidence 9764
No 292
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=26.46 E-value=2.9e+02 Score=29.24 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=44.9
Q ss_pred EEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCC------------------cchHHHHHHc--CCEEEEcccCCCC-C
Q 011690 323 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS------------------AEDYPLLLGS--ADLGVCLHTSSSG-L 381 (479)
Q Consensus 323 ~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~------------------~~~~~~~l~~--adi~v~p~~~s~~-e 381 (479)
++++-+--|...+.+.+++++.+.+.|..... -. .+.+.++.+. +|++|.. ..| .
T Consensus 28 f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~-~~~~~l~~~l~~~~~~v~~G~~~~~~l~~~~~vD~Vv~A---i~G~a 103 (385)
T PRK05447 28 FRVVALSAGKNVELLAEQAREFRPKYVVVADE-EAAKELKEALAAAGIEVLAGEEGLCELAALPEADVVVAA---IVGAA 103 (385)
T ss_pred cEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhccCCceEEEChhHHHHHhcCCCCCEEEEe---CcCcc
Confidence 44433334667778888888776554433221 00 3445555553 5888875 333 3
Q ss_pred CCcHHHHHHHhCCCcEEEec
Q 011690 382 DLPMKVVDMFGCGLPVCAVS 401 (479)
Q Consensus 382 ~~p~~llEama~G~PVIas~ 401 (479)
|+ ...++|+.+|++|...+
T Consensus 104 Gl-~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 104 GL-LPTLAAIRAGKRIALAN 122 (385)
T ss_pred cH-HHHHHHHHCCCcEEEeC
Confidence 44 46899999999998865
No 293
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.45 E-value=3e+02 Score=28.32 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCCEEE--EEEecCC-----ChHHHHHHHHHcCCCcEEEecCCCCcchHHH----HHHcCCEEEEcccCCCCCCCcHHHH
Q 011690 320 YPRLLF--IITGKGP-----DKESYEEKIRRLRLKRVAFRTMWLSAEDYPL----LLGSADLGVCLHTSSSGLDLPMKVV 388 (479)
Q Consensus 320 ~p~~~l--~IvG~G~-----~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~----~l~~adi~v~p~~~s~~e~~p~~ll 388 (479)
.||++= ++...|. ..+++++.++..|++=+...= -+..|++. +....|++..|-..-..-++...+.
T Consensus 156 ~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v--~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~ 233 (322)
T COG2984 156 LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV--TSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ 233 (322)
T ss_pred CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec--CcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Confidence 777754 4666664 236777788888876444432 13455444 4466699888732222234667899
Q ss_pred HHHhCCCcEEEecCccchhccccCccEEEeCCH----HHHHHHHHHHHhc
Q 011690 389 DMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSS----SELADQLLMLFKG 434 (479)
Q Consensus 389 Eama~G~PVIas~~~~~~e~i~~~~~G~l~~~~----~~la~~l~~l~~~ 434 (479)
+|...++|+++++.+ .++.|-+.-+--|- -+-++...+++++
T Consensus 234 ~a~~~kiPli~sd~~----~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG 279 (322)
T COG2984 234 VANKAKIPLIASDTS----SVKEGALAALGVDYKDLGKQTGEMVVKILKG 279 (322)
T ss_pred HHHHhCCCeecCCHH----HHhcCcceeeccCHHHHHHHHHHHHHHHHcC
Confidence 999999999999864 44455443333332 2455567788874
No 294
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.27 E-value=2e+02 Score=28.53 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=44.8
Q ss_pred EEEEEecCCCh-HHHHHHHHHcCCCcEEEecCCCCcc---hHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 324 LFIITGKGPDK-ESYEEKIRRLRLKRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 324 ~l~IvG~G~~~-~~l~~~~~~~~l~~V~f~G~~~~~~---~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
.++++|.-++. ..+++.++..|- -.+.|+|++.. .+...+..=|+.|+.. ...+ ...+.||-.+|+|||+
T Consensus 73 ~Il~Vstr~~~~~~V~k~A~~tg~--~~i~~Rw~pGtlTN~~~~~f~~P~llIV~D--p~~d--~qAI~EA~~lnIPvIa 146 (249)
T PTZ00254 73 DVVVVSSRPYGQRAVLKFAQYTGA--SAIAGRFTPGTFTNQIQKKFMEPRLLIVTD--PRTD--HQAIREASYVNIPVIA 146 (249)
T ss_pred cEEEEEcCHHHHHHHHHHHHHhCC--eEECCcccCCCCCCccccccCCCCEEEEeC--CCcc--hHHHHHHHHhCCCEEE
Confidence 45677755443 344555554443 23344454322 1222334556777642 1222 3489999999999999
Q ss_pred e-cCccchhcc
Q 011690 400 V-SYSCIEELV 409 (479)
Q Consensus 400 s-~~~~~~e~i 409 (479)
- |.-+.++.|
T Consensus 147 l~DTds~p~~V 157 (249)
T PTZ00254 147 LCDTDSPLEYV 157 (249)
T ss_pred EecCCCCcccC
Confidence 7 565566655
No 295
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=26.04 E-value=7.1e+02 Score=26.59 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=27.7
Q ss_pred chHHHHHHcCCEEEEcccCCCCCCCcH----HHHHHHhCCCcEEEec
Q 011690 359 EDYPLLLGSADLGVCLHTSSSGLDLPM----KVVDMFGCGLPVCAVS 401 (479)
Q Consensus 359 ~~~~~~l~~adi~v~p~~~s~~e~~p~----~llEama~G~PVIas~ 401 (479)
.++...++.||++|.--.+....-.|. -++-|..+|+|++...
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~g 155 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIG 155 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEEC
Confidence 366778999999997533321111121 2456788999999875
No 296
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=25.69 E-value=4.4e+02 Score=25.77 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=49.0
Q ss_pred CcEEEecCCCCc---chHHHHHHcCCEEEEcccCCCCCCCcHH--HHHHHhCCCcEEEecCccchhccccCccEEEe-CC
Q 011690 347 KRVAFRTMWLSA---EDYPLLLGSADLGVCLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SS 420 (479)
Q Consensus 347 ~~V~f~G~~~~~---~~~~~~l~~adi~v~p~~~s~~e~~p~~--llEama~G~PVIas~~~~~~e~i~~~~~G~l~-~~ 420 (479)
++|.|.|..+|. ++..+....||++|+. .+|... .|.. +..+...|.|++.-+.+... +. ....+.. .+
T Consensus 155 P~Vv~FgE~~p~~~~~~~~~~~~~aDl~lvi-GTSl~V-~pa~~l~~~~~~~g~~~i~iN~~~t~--~d-~~~~~~i~~~ 229 (244)
T PRK14138 155 PNIVFFGEALPQDALREAIRLSSKASLMIVM-GSSLVV-YPAAELPLITVRSGGKLVIVNLGETP--LD-DIATLKYNMD 229 (244)
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEe-CcCCee-ecHhHHHHHHHHcCCeEEEEcCCCCC--CC-cceeEEEeCC
Confidence 688888987775 4466778899999985 333221 2322 23567789999988875432 21 2233444 66
Q ss_pred HHHHHHHHHH
Q 011690 421 SSELADQLLM 430 (479)
Q Consensus 421 ~~~la~~l~~ 430 (479)
..+....|.+
T Consensus 230 ~~~~l~~l~~ 239 (244)
T PRK14138 230 VVEFANRVMS 239 (244)
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 297
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.48 E-value=4e+02 Score=23.64 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCCEEEEEEecC----CChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHc
Q 011690 320 YPRLLFIITGKG----PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 367 (479)
Q Consensus 320 ~p~~~l~IvG~G----~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~ 367 (479)
.+++++++.|.- .+.+...+..+++|.+.| |.+. -+.+++..++..
T Consensus 83 ~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v-f~~~-~~~~~i~~~l~~ 132 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV-FPPG-TDPEEAIDDLKK 132 (137)
T ss_pred CCCCeEEEECCCCCCccChHHHHHHHHHcCCCEE-ECcC-CCHHHHHHHHHH
Confidence 456766666642 224556677888887644 5544 577787777654
No 298
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=25.15 E-value=7.7e+02 Score=25.43 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHHHHHHHcCC--CcEE
Q 011690 273 WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL--KRVA 350 (479)
Q Consensus 273 ~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~~~~~~~~l--~~V~ 350 (479)
...+.+.+.+++|+....++ .|.++++++|+ .+.+++.+.++++ +++.
T Consensus 9 mGgD~~p~~vl~aa~~a~~~---------------------------~~~~~~iLvG~---~~~I~~~l~~~~~~~~~~~ 58 (334)
T PRK05331 9 MGGDFGPEVVVPGALQALKE---------------------------HPDLEIILVGD---EEKIKPLLAKKPDLKERIE 58 (334)
T ss_pred CCCccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEeC---HHHHHHHHHhcCCCcCCcE
Confidence 34457889999999887764 66799999995 5567777777665 4677
Q ss_pred EecC
Q 011690 351 FRTM 354 (479)
Q Consensus 351 f~G~ 354 (479)
+...
T Consensus 59 Iv~~ 62 (334)
T PRK05331 59 IVHA 62 (334)
T ss_pred EEeC
Confidence 7654
No 299
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=25.05 E-value=3.1e+02 Score=27.31 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=31.6
Q ss_pred EEecCCC-CChhHHHHHHHHHhhCCCcEEEEecCCCCCc--ccccCCCCeEEEEee
Q 011690 10 VVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGSKPH--AAILEHPSIHIHTMT 62 (479)
Q Consensus 10 ~~~~~~g-~~~r~~~~a~~La~~~G~eV~Vv~~~~~~~~--~~~~~~~gi~i~~~~ 62 (479)
++.+|=| .++++.-.+..|. . +++|+||++...+.. ..+.-+.-+++.++.
T Consensus 4 LlTNDDGi~a~Gi~aL~~al~-~-~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~ 57 (252)
T COG0496 4 LLTNDDGIHAPGIRALARALR-E-GADVTVVAPDREQSGASHSLTLHEPLRVRQVD 57 (252)
T ss_pred EEecCCccCCHHHHHHHHHHh-h-CCCEEEEccCCCCcccccccccccCceeeEec
Confidence 4444444 4889888888887 4 999999998754322 222223345544554
No 300
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.85 E-value=54 Score=24.99 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=14.1
Q ss_pred HHHHHHhCCCcEEEe
Q 011690 386 KVVDMFGCGLPVCAV 400 (479)
Q Consensus 386 ~llEama~G~PVIas 400 (479)
++.|++.+|.||+|-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 899999999999985
No 301
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=24.79 E-value=6.5e+02 Score=24.48 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=25.6
Q ss_pred CcHHHHHHHh-CCCcEEEe-cCccc--hhccccCccEEEeC
Q 011690 383 LPMKVVDMFG-CGLPVCAV-SYSCI--EELVKVDKNGLLFS 419 (479)
Q Consensus 383 ~p~~llEama-~G~PVIas-~~~~~--~e~i~~~~~G~l~~ 419 (479)
=|.+.-|.++ +|+|+|.. |.++. .+-+++...|++.-
T Consensus 75 GP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIiv 115 (277)
T COG1927 75 GPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIV 115 (277)
T ss_pred CchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEe
Confidence 3668888887 78886554 56653 46667777888873
No 302
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.61 E-value=6.3e+02 Score=24.23 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEe-cC--CChHHHHH---HHHHcCCCcEE
Q 011690 277 EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KG--PDKESYEE---KIRRLRLKRVA 350 (479)
Q Consensus 277 K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG-~G--~~~~~l~~---~~~~~~l~~V~ 350 (479)
..++.++++++.+++. .-.+.+.+.. .+ ...+.+.+ .+.++|.+.|.
T Consensus 112 ~~~~~~~~~i~~a~~~---------------------------G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 112 EDLENAEEAIEAAKEA---------------------------GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHHHHC---------------------------CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3567777777777653 2335555532 33 34444444 44556666666
Q ss_pred E---ecCCCCcchHHHHHHcC----C-EEEEcccCC-CCCCCcHHHHHHHhCCCcEEEecCccchhccccCccEEEeCCH
Q 011690 351 F---RTMWLSAEDYPLLLGSA----D-LGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSS 421 (479)
Q Consensus 351 f---~G~~~~~~~~~~~l~~a----d-i~v~p~~~s-~~e~~p~~llEama~G~PVIas~~~~~~e~i~~~~~G~l~~~~ 421 (479)
+ .|. ..++++..+++.. . +-+--|... .|.++. ..++|+.+|.-.|-+..+|+.+-. |- .+.
T Consensus 165 l~Dt~G~-~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~a-n~laA~~aG~~~id~s~~G~G~~~-----Gn--~~~ 235 (265)
T cd03174 165 LKDTVGL-ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVA-NSLAALEAGADRVDGSVNGLGERA-----GN--AAT 235 (265)
T ss_pred echhcCC-cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHH-HHHHHHHcCCCEEEeccccccccc-----cC--ccH
Confidence 6 576 7888877766652 2 222223333 444333 678999999999999999887422 21 124
Q ss_pred HHHHHHHHHH
Q 011690 422 SELADQLLML 431 (479)
Q Consensus 422 ~~la~~l~~l 431 (479)
++++..+...
T Consensus 236 e~~~~~l~~~ 245 (265)
T cd03174 236 EDLVAALEGL 245 (265)
T ss_pred HHHHHHHHhc
Confidence 6666666554
No 303
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=24.55 E-value=3.5e+02 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.4
Q ss_pred hHHHHHH--cCCEEEEcccCCCCCCCcHHHHHHHh--CCCcEEEec
Q 011690 360 DYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG--CGLPVCAVS 401 (479)
Q Consensus 360 ~~~~~l~--~adi~v~p~~~s~~e~~p~~llEama--~G~PVIas~ 401 (479)
++.+.+. .+|+++=. +..+--|...++++|+ |..|||..-
T Consensus 97 ~L~eav~~~kptvlIG~--S~~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 97 DLEDAVEAAKPDFLIGV--SRVGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred CHHHHHHhhCCCEEEEe--CCCCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 5666777 78888865 2213348889999999 677988763
No 304
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=24.28 E-value=1.2e+02 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHhhCCCcEEEEecCCCC
Q 011690 17 RSPRMQYQALSLARQMSLEVDVVAYGGSK 45 (479)
Q Consensus 17 ~~~r~~~~a~~La~~~G~eV~Vv~~~~~~ 45 (479)
.++++...+..|.+ .||+|.|+++...+
T Consensus 12 ~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 12 DAPGIRALAKALSA-LGHDVVVVAPDSEQ 39 (196)
T ss_dssp TSHHHHHHHHHHTT-TSSEEEEEEESSST
T ss_pred CCHHHHHHHHHHHh-cCCeEEEEeCCCCC
Confidence 58899998899966 48999999987543
No 305
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=24.15 E-value=1.8e+02 Score=27.74 Aligned_cols=82 Identities=7% Similarity=-0.006 Sum_probs=46.1
Q ss_pred EEEEEEecCCC-hHHHHHHHHHcCCCc--EEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEE
Q 011690 323 LLFIITGKGPD-KESYEEKIRRLRLKR--VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 399 (479)
Q Consensus 323 ~~l~IvG~G~~-~~~l~~~~~~~~l~~--V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIa 399 (479)
-.++++|.-+. ...+++.++..|-.. =+|+|.-++.-.. .-+..=|+.++.- ...+ ..++-||..+|.|+|+
T Consensus 62 ~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~d--p~~~--~~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 62 EDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTD--PRAD--HQALKEASEVGIPIVA 136 (196)
T ss_pred CeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEEC--Cccc--cHHHHHHHHcCCCEEE
Confidence 47888886543 344555555554321 1233321322221 1234557777641 2222 3499999999999999
Q ss_pred e-cCccchhcc
Q 011690 400 V-SYSCIEELV 409 (479)
Q Consensus 400 s-~~~~~~e~i 409 (479)
- |..+.+..+
T Consensus 137 i~DTn~dp~~v 147 (196)
T TIGR01012 137 LCDTDNPLRYV 147 (196)
T ss_pred EeeCCCCCccC
Confidence 7 566666665
No 306
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=23.92 E-value=2.9e+02 Score=28.95 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCCEEEEEEecC-----CChHHHHHHHHHcCCCcEEEecCC-CCcchHHHHHHc----CCEEEEcccCCCCCCCcHHHHH
Q 011690 320 YPRLLFIITGKG-----PDKESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVD 389 (479)
Q Consensus 320 ~p~~~l~IvG~G-----~~~~~l~~~~~~~~l~~V~f~G~~-~~~~~~~~~l~~----adi~v~p~~~s~~e~~p~~llE 389 (479)
+|+=..++.|-| |........+++.+++|+.++-.- +...-+..++.+ .|-+++|---|.- .|...+|
T Consensus 128 nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI--~G~~~y~ 205 (364)
T PRK15062 128 NPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTI--IGTEPYE 205 (364)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEE--eccchhH
Confidence 677666666655 333444555677788887776431 334556666654 5778888322211 2335566
Q ss_pred HH--hCCCcEEEecC
Q 011690 390 MF--GCGLPVCAVSY 402 (479)
Q Consensus 390 am--a~G~PVIas~~ 402 (479)
-+ -.|+|+|.+..
T Consensus 206 ~l~~~y~~P~VVaGF 220 (364)
T PRK15062 206 FLAEEYGIPVVVAGF 220 (364)
T ss_pred HHHHHcCCCeEEecc
Confidence 55 45888887754
No 307
>PRK05380 pyrG CTP synthetase; Validated
Probab=23.77 E-value=4e+02 Score=29.52 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=50.2
Q ss_pred CCCEEEEEEecC-CChHHHHHHHHHc---CC-CcEEEecCCCCcch-----HHHHHHcCCEEEEcccCC--CCCCCcHHH
Q 011690 320 YPRLLFIITGKG-PDKESYEEKIRRL---RL-KRVAFRTMWLSAED-----YPLLLGSADLGVCLHTSS--SGLDLPMKV 387 (479)
Q Consensus 320 ~p~~~l~IvG~G-~~~~~l~~~~~~~---~l-~~V~f~G~~~~~~~-----~~~~l~~adi~v~p~~~s--~~e~~p~~l 387 (479)
...+++-+||+- ...+.|....+.+ +. .++...-.|++.++ ..+.+..+|-.++|-... ..++.-..+
T Consensus 286 ~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~g~i~~i 365 (533)
T PRK05380 286 KGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAI 365 (533)
T ss_pred CCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccccHHHHH
Confidence 346999999975 3455555544443 22 22222223455444 567899999999973221 111222355
Q ss_pred HHHHhCCCcEEEecCcc
Q 011690 388 VDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 388 lEama~G~PVIas~~~~ 404 (479)
-++...|+|+++.-.|.
T Consensus 366 ~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 366 RYARENNIPFLGICLGM 382 (533)
T ss_pred HHHHHCCCcEEEEchHH
Confidence 56678899999886554
No 308
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=23.73 E-value=6.2e+02 Score=23.86 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=53.8
Q ss_pred CEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchH-----------------HHHHHcCCEEEEcccCCCCCCCc
Q 011690 322 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDY-----------------PLLLGSADLGVCLHTSSSGLDLP 384 (479)
Q Consensus 322 ~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~-----------------~~~l~~adi~v~p~~~s~~e~~p 384 (479)
+-+.+|+|.|......-+...+.| .+|++..+ -..+++ ...+..+|+++.. +... .+-
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~-~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaa-T~d~--elN 84 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP-ELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAA-TNDP--RVN 84 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC-CCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEc-CCCH--HHH
Confidence 457888888864433222223333 35666544 112222 2345667777764 2221 133
Q ss_pred HHHHHHHhCCCcEEEecCccc-----hhccccCccEEEeCC---HHHHHHHHHHHHh
Q 011690 385 MKVVDMFGCGLPVCAVSYSCI-----EELVKVDKNGLLFSS---SSELADQLLMLFK 433 (479)
Q Consensus 385 ~~llEama~G~PVIas~~~~~-----~e~i~~~~~G~l~~~---~~~la~~l~~l~~ 433 (479)
..+.+....+++|...+.+.. +-+++.+.--+-+++ +-.+|..|.+-++
T Consensus 85 ~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie 141 (202)
T PRK06718 85 EQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELE 141 (202)
T ss_pred HHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHH
Confidence 356666677889888875443 444544433333322 3345555554444
No 309
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.65 E-value=3.7e+02 Score=25.74 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCCEEEEEEecC--CChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcE
Q 011690 320 YPRLLFIITGKG--PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 397 (479)
Q Consensus 320 ~p~~~l~IvG~G--~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PV 397 (479)
+|+ +++|-| -..+..++. .+.|-+-+.=.+ ...++.+.-...++.++| |.--|.-+..|+.+|..+
T Consensus 57 ~~~---~~vGAGTVl~~~~a~~a-~~aGA~FivsP~---~~~~v~~~~~~~~i~~iP-----G~~TptEi~~A~~~Ga~~ 124 (204)
T TIGR01182 57 VPD---ALIGAGTVLNPEQLRQA-VDAGAQFIVSPG---LTPELAKHAQDHGIPIIP-----GVATPSEIMLALELGITA 124 (204)
T ss_pred CCC---CEEEEEeCCCHHHHHHH-HHcCCCEEECCC---CCHHHHHHHHHcCCcEEC-----CCCCHHHHHHHHHCCCCE
Confidence 775 445555 234444433 334433332222 256666666677776665 333455666666666655
Q ss_pred E
Q 011690 398 C 398 (479)
Q Consensus 398 I 398 (479)
|
T Consensus 125 v 125 (204)
T TIGR01182 125 L 125 (204)
T ss_pred E
Confidence 4
No 310
>PRK06091 membrane protein FdrA; Validated
Probab=23.64 E-value=3.8e+02 Score=29.83 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=66.4
Q ss_pred EEEEe-cCCChHHHHHHHHHcCC--CcEEEecCCC---------CcchHHHHHHc---CCEEEEcccCCCCCCCcHHHHH
Q 011690 325 FIITG-KGPDKESYEEKIRRLRL--KRVAFRTMWL---------SAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVD 389 (479)
Q Consensus 325 l~IvG-~G~~~~~l~~~~~~~~l--~~V~f~G~~~---------~~~~~~~~l~~---adi~v~p~~~s~~e~~p~~llE 389 (479)
+-|++ .|..-..+-..+.+.|+ .++.=+|. - +..|+.+++.+ ..+.++- .....|++..++++
T Consensus 196 IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn-~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly-~kppaE~v~~~fl~ 273 (555)
T PRK06091 196 IGVIGASGTGIQELCSQIALAGEGITHAIGLGG-RDLSAEVGGISALTALEMLSADEKSEVIAFV-SKPPAEAVRLKIIN 273 (555)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCC-CccccccCCCCHHHHHHHHhhCCCCcEEEEE-EecCchHHHHHHHH
Confidence 44455 56666667777887766 56666675 2 23345555543 2333332 11234677778899
Q ss_pred HH-hCCCcEEEecCccchhccccCccEEEe-CCHHHHHHHHHHHHh
Q 011690 390 MF-GCGLPVCAVSYSCIEELVKVDKNGLLF-SSSSELADQLLMLFK 433 (479)
Q Consensus 390 am-a~G~PVIas~~~~~~e~i~~~~~G~l~-~~~~~la~~l~~l~~ 433 (479)
++ .+++|||+...|..+.-- ...|++. .+.+++++....+..
T Consensus 274 aar~~~KPVVvlk~Grs~~g~--~q~GVi~a~tleEl~~~A~~la~ 317 (555)
T PRK06091 274 AMKATGKPVVALFLGYTPAVA--RDENVWFASTLDEAARLACLLSR 317 (555)
T ss_pred HHhhCCCCEEEEEecCCchhh--hcCCeEEeCCHHHHHHHHHHHhc
Confidence 75 569999999888765333 4456666 889999987666554
No 311
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.32 E-value=3e+02 Score=28.32 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred CCEEEEEEecCC-----------ChHHHHHHHHHcCCCcEEEecCCCCcchH--HHHHHcCCEEEEcccCCCCCCCcHHH
Q 011690 321 PRLLFIITGKGP-----------DKESYEEKIRRLRLKRVAFRTMWLSAEDY--PLLLGSADLGVCLHTSSSGLDLPMKV 387 (479)
Q Consensus 321 p~~~l~IvG~G~-----------~~~~l~~~~~~~~l~~V~f~G~~~~~~~~--~~~l~~adi~v~p~~~s~~e~~p~~l 387 (479)
++-++-+.|=.| +.+-+...++++.-+.+...|+ +|.+.+ .......|++|+- ....|. .|.|+
T Consensus 194 ~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v~GP-~paDt~F~~~~~~~~D~vvaM-YHDQGl-iP~K~ 270 (320)
T TIGR00557 194 ARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGIDLIGP-LPADTLFHPAALAKYDAVLAM-YHDQGL-IPLKY 270 (320)
T ss_pred CCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCC-CCchhhcccccccCCCEEEEC-cccccc-hhhee
Confidence 445678888322 1234445555554445777898 887763 3344668999984 333555 67777
Q ss_pred HHH-----HhCCCcEEEec--CccchhccccCccEEEeCCHHHHHHHHHHHH
Q 011690 388 VDM-----FGCGLPVCAVS--YSCIEELVKVDKNGLLFSSSSELADQLLMLF 432 (479)
Q Consensus 388 lEa-----ma~G~PVIas~--~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~ 432 (479)
+.- +..|+|+|-|+ .|-.-++.-. =.-|+.++.+++....
T Consensus 271 l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGk-----g~A~~~S~~~Ai~~A~ 317 (320)
T TIGR00557 271 LGFDEGVNVTLGLPFIRTSPDHGTAFDIAGK-----GKADPGSLIAAIKLAI 317 (320)
T ss_pred cccCcceEEecCCCeeEeCCCCcchhhhhcC-----CCCCHHHHHHHHHHHH
Confidence 743 46899999885 4444455422 2245667777776544
No 312
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=22.21 E-value=8.1e+02 Score=24.63 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=32.4
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCC--CcEEEecCCCCcchH------HHHHH--cCCEEEEc
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRL--KRVAFRTMWLSAEDY------PLLLG--SADLGVCL 374 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l--~~V~f~G~~~~~~~~------~~~l~--~adi~v~p 374 (479)
...++++++|+ ++.+++.++++++ +++.+... .+.. ..+++ .+|.++..
T Consensus 36 ~~~~~~iLvG~---~~~I~~~~~~~~l~~~~ieIi~~---~~~~~s~~~a~~lv~~G~aD~~vsg 94 (294)
T TIGR02706 36 HGIARAILVGD---EEKINEIAKKIGMNLDDVEIVNA---PSPKKAALLAVRLVSTGKADMLMKG 94 (294)
T ss_pred CCCceEEEECC---HHHHHHHHHHcCCCccCcEEECC---CCcHHHHHHHHHHHHCCCCCEEEeC
Confidence 45589999995 5677777888766 46777765 2222 33355 78888853
No 313
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.01 E-value=2.1e+02 Score=28.32 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=27.0
Q ss_pred hHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCcc
Q 011690 360 DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 404 (479)
Q Consensus 360 ~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~ 404 (479)
++.++...+|+++-. +........+..++..|+|||....|-
T Consensus 61 d~~~l~~~~DvVIdf---T~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 61 DLEAVETDPDVLIDF---TTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CHHHhcCCCCEEEEC---CChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344443457988765 223334457889999999999755443
No 314
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.97 E-value=6.6e+02 Score=23.53 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCcEE-EecCCCCcchHHHHHH-----cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecCccchhc
Q 011690 335 ESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLG-----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 408 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~-f~G~~~~~~~~~~~l~-----~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~~~~~e~ 408 (479)
..+++.+++++..-.. +... -+.+...+.+. ..|..++-+ .........+-++...|+|||..+.. +.
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~--~~~~~~~~~l~~~~~~gIpvv~~d~~---~~ 91 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSP--VDPDSLAPFLEKAKAAGIPVVTVDSD---EA 91 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEES--SSTTTTHHHHHHHHHTTSEEEEESST---HH
T ss_pred HHHHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecC--CCHHHHHHHHHHHhhcCceEEEEecc---cc
Confidence 4466777777765333 3444 34444333333 347666532 22233556788888899999999877 23
Q ss_pred cccCccEEEeCCH----HHHHHHHHHHHh
Q 011690 409 VKVDKNGLLFSSS----SELADQLLMLFK 433 (479)
Q Consensus 409 i~~~~~G~l~~~~----~~la~~l~~l~~ 433 (479)
.......++-.|. ..+++.+.+.+.
T Consensus 92 ~~~~~~~~v~~d~~~~G~~~a~~l~~~~~ 120 (257)
T PF13407_consen 92 PDSPRAAYVGTDNYEAGKLAAEYLAEKLG 120 (257)
T ss_dssp TTSTSSEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred ccccceeeeeccHHHHHHHHHHHHHHHhc
Confidence 3333445555443 345555554444
No 315
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=21.93 E-value=1.2e+02 Score=26.37 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011690 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (479)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~ 42 (479)
|++.+.+.|..+.. .....+..|.++ |++|+|+...
T Consensus 1 k~i~l~vtGs~~~~-~~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAY-KAPDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGG-GHHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHhhC-CCEEEEEECC
Confidence 35566665654433 356667778775 9999998644
No 316
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=21.85 E-value=4.6e+02 Score=24.13 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=7.7
Q ss_pred CCCcEEEEeC
Q 011690 100 ASPDVFLVQN 109 (479)
Q Consensus 100 ~~~DvI~~~~ 109 (479)
.+||++++-+
T Consensus 78 ~~~Dl~v~~~ 87 (181)
T PF00551_consen 78 LNPDLIVVAG 87 (181)
T ss_dssp TT-SEEEESS
T ss_pred hccceeehhh
Confidence 8999988876
No 317
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.85 E-value=6.6e+02 Score=24.94 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCC
Q 011690 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~ 43 (479)
++-++=.|++|.|.-+....-..|.+.+.+|.|++.+.
T Consensus 4 KiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGa 41 (277)
T PRK00994 4 KIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGA 41 (277)
T ss_pred EEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCC
Confidence 34566779998877776666566665688888887443
No 318
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=21.81 E-value=5.7e+02 Score=27.37 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEEecCCCCCCHHHHHHHHHHhHHHHhhhhccCCCchhhhhHhhhccCcccCCCCEEEEEEecCCChHHHH
Q 011690 259 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 338 (479)
Q Consensus 259 ~~~~~~~~i~~~g~~~~~K~~~~lieA~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~IvG~G~~~~~l~ 338 (479)
..+.+|.+-++..+.++-.-..-|++++. ++ +|++.++++---+... +
T Consensus 45 ~~~~~p~vWiHaaSVGEv~a~~pLv~~l~---~~---------------------------~P~~~ilvTt~T~Tg~--e 92 (419)
T COG1519 45 VKPEGPLVWIHAASVGEVLAALPLVRALR---ER---------------------------FPDLRILVTTMTPTGA--E 92 (419)
T ss_pred CCCCCCeEEEEecchhHHHHHHHHHHHHH---Hh---------------------------CCCCCEEEEecCccHH--H
Confidence 45667778888888876555555555443 33 9999988876433222 3
Q ss_pred HHHHHcCCC-cEEEecCCCCcc---hHHHHHH--cCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEecC
Q 011690 339 EKIRRLRLK-RVAFRTMWLSAE---DYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 402 (479)
Q Consensus 339 ~~~~~~~l~-~V~f~G~~~~~~---~~~~~l~--~adi~v~p~~~s~~e~~p~~llEama~G~PVIas~~ 402 (479)
...+.++-. .+.+ +|.+ -+..+++ .-|++|+- .+|=.|+.+.|+-..|+|++-.+.
T Consensus 93 ~a~~~~~~~v~h~Y----lP~D~~~~v~rFl~~~~P~l~Ii~----EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 93 RAAALFGDSVIHQY----LPLDLPIAVRRFLRKWRPKLLIIM----ETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred HHHHHcCCCeEEEe----cCcCchHHHHHHHHhcCCCEEEEE----eccccHHHHHHHHHcCCCEEEEee
Confidence 333333322 2333 3333 3444543 45888873 566699999999999999887753
No 319
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.69 E-value=6.9e+02 Score=23.97 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=51.3
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhh-CCCcEEEEecCCCC-CcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011690 6 RACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSK-PHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~La~~-~G~eV~Vv~~~~~~-~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (479)
+++|+.+|. ..-++..+...... ...+|..+-.+..+ ...+.....||+...+.. +.++..-.+=..+..
T Consensus 2 ki~VlaSG~---GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~-----k~~~~r~~~d~~l~~ 73 (200)
T COG0299 2 KIAVLASGN---GSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDR-----KEFPSREAFDRALVE 73 (200)
T ss_pred eEEEEEeCC---cccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecc-----ccCCCHHHHHHHHHH
Confidence 466666653 23445444444322 12355555444322 222444567888777761 112211112233334
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecCc
Q 011690 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (479)
Q Consensus 84 ~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~~ 137 (479)
.+.+ .+||+|.+-. +--.+...++..+.+ + |+..|..
T Consensus 74 ~l~~------------~~~dlvvLAG---yMrIL~~~fl~~~~g-r-IlNIHPS 110 (200)
T COG0299 74 ALDE------------YGPDLVVLAG---YMRILGPEFLSRFEG-R-ILNIHPS 110 (200)
T ss_pred HHHh------------cCCCEEEEcc---hHHHcCHHHHHHhhc-c-eEecCcc
Confidence 4443 8999998887 322233334444444 2 5667743
No 320
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.54 E-value=8.1e+02 Score=24.34 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEc-ccCC-CCC--CCcHHHHHHH-----hCCCcEEEec-C
Q 011690 333 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL-HTSS-SGL--DLPMKVVDMF-----GCGLPVCAVS-Y 402 (479)
Q Consensus 333 ~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p-~~~s-~~e--~~p~~llEam-----a~G~PVIas~-~ 402 (479)
+.+.+.+.+++.|++.|.+..+--+.+.+..+.+.++-||.. +... .|. .++..+-|.+ ..++|++.-- +
T Consensus 132 e~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI 211 (263)
T CHL00200 132 ESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGI 211 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCc
Confidence 345677888999999999998723456788889999844432 2111 332 4666677776 6788988731 1
Q ss_pred c---cchhccccCccEEEeCC
Q 011690 403 S---CIEELVKVDKNGLLFSS 420 (479)
Q Consensus 403 ~---~~~e~i~~~~~G~l~~~ 420 (479)
. ...++...|-+|+++.|
T Consensus 212 ~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 212 STSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCHHHHHHHHhcCCCEEEECH
Confidence 1 12345555678999976
No 321
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=21.52 E-value=2.8e+02 Score=28.72 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCEEEEEEec-------C----CChHHHHHHHHHcCCCcEEEecCCCCcchH--HHHHHcCCEEEEcccCCCCCCCcHHH
Q 011690 321 PRLLFIITGK-------G----PDKESYEEKIRRLRLKRVAFRTMWLSAEDY--PLLLGSADLGVCLHTSSSGLDLPMKV 387 (479)
Q Consensus 321 p~~~l~IvG~-------G----~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~--~~~l~~adi~v~p~~~s~~e~~p~~l 387 (479)
++-++.+.|= | .+.+-+...++++.-..+...|+ +|.+.+ .......|++|+- ....|. .|.|+
T Consensus 201 ~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~g~~v~GP-~paDt~F~~~~~~~~D~vvaM-YHDQGl-iP~K~ 277 (332)
T PRK03743 201 KNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQEMGINVEGP-VPADSVFHLALQGRYDAVLSL-YHDQGH-IATKT 277 (332)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcccCC-CCchhhcccccccCCCEEEEc-ccccCC-hhhee
Confidence 3446778882 1 12233444555554344666798 887764 3344678999984 333555 67777
Q ss_pred HHH-----HhCCCcEEEec--CccchhccccCccEEEeCCHHHHHHHHHHHHh
Q 011690 388 VDM-----FGCGLPVCAVS--YSCIEELVKVDKNGLLFSSSSELADQLLMLFK 433 (479)
Q Consensus 388 lEa-----ma~G~PVIas~--~~~~~e~i~~~~~G~l~~~~~~la~~l~~l~~ 433 (479)
+.- +..|+|+|-|+ .|-.-++.-. | .-|+.++.++|....+
T Consensus 278 l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGk---g--~A~~~S~~~Ai~lA~~ 325 (332)
T PRK03743 278 LDFERTIAITNGLPFLRTSVDHGTAFDIAGT---G--KASSVSMEEAILLAAK 325 (332)
T ss_pred cccCCceEEecCCCeeEeCCCCcchhhhhcC---C--CCCHHHHHHHHHHHHH
Confidence 664 56899998885 4444455522 2 2467778887776655
No 322
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.48 E-value=2.7e+02 Score=27.90 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=29.2
Q ss_pred ChhHHH-HHHHHHhhCCCcEEEEecCCCCCc---ccccCCCCeEEEEee
Q 011690 18 SPRMQY-QALSLARQMSLEVDVVAYGGSKPH---AAILEHPSIHIHTMT 62 (479)
Q Consensus 18 ~~r~~~-~a~~La~~~G~eV~Vv~~~~~~~~---~~~~~~~gi~i~~~~ 62 (479)
|+|+.+ .|..||++ ||+|.+++...+... .++....++.+..++
T Consensus 15 SsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~ 62 (265)
T COG0300 15 SSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIP 62 (265)
T ss_pred CchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE
Confidence 445544 48999997 999999997665322 233334467777777
No 323
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=21.33 E-value=4e+02 Score=23.17 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCEEEEEEecCCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCC
Q 011690 320 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD 369 (479)
Q Consensus 320 ~p~~~l~IvG~G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~ad 369 (479)
.++.-.++.|+++..+.++. +++.| .+|...|. +..--.++..+||
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~-lr~~G-~~V~v~~~--~~~~s~~L~~~~d 144 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVER-LRELG-KRVIVVGF--EAKTSRELRKAAD 144 (149)
T ss_pred CCCEEEEEECCccHHHHHHH-HHHcC-CEEEEEcc--CccChHHHHHhCC
Confidence 56788888998876665554 45555 56888786 2245556666666
No 324
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.26 E-value=3.1e+02 Score=19.45 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=41.3
Q ss_pred EEEEEEec--CCChHHHHHHHHHcCCCcEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHhCCCcEEEe
Q 011690 323 LLFIITGK--GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 400 (479)
Q Consensus 323 ~~l~IvG~--G~~~~~l~~~~~~~~l~~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama~G~PVIas 400 (479)
..|.+.|. +..++.+++.+.++|-. +... ++ ..++.+|++... .+.....+...|+|||..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~---v~~~-~~--------~~~thvI~~~~~-----~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK---VTSS-VS--------KKTTHVIVGSDA-----GPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE---Eecc-cc--------CCceEEEECCCC-----CchHHHHHHHcCCeEecH
Confidence 57888885 68899999999998732 2222 11 466777765111 122378888999999876
Q ss_pred c
Q 011690 401 S 401 (479)
Q Consensus 401 ~ 401 (479)
+
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 325
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.18 E-value=5.2e+02 Score=24.70 Aligned_cols=104 Identities=20% Similarity=0.111 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhh----CCCcEEEEecCCCCCcccccCCCCeEEEEeecCCCCCCCCCchhHHHHHH
Q 011690 6 RACVVVLGDLGRSPRMQYQALSLARQ----MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~La~~----~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~l 81 (479)
+++|+++|. |...+++--+.+ .+.-+.|++....-.........||+++.++ ..........-..+
T Consensus 1 ki~vl~Sg~-----Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~-----~~~~~~~~~~~~~~ 70 (207)
T PLN02331 1 KLAVFVSGG-----GSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP-----KTKGEPDGLSPDEL 70 (207)
T ss_pred CEEEEEeCC-----ChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEec-----cccCCCcccchHHH
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCcchHHHHHHHHHhcCCcEEEEecC
Q 011690 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHN 136 (479)
Q Consensus 82 ~~~l~~~~~~~~~l~~~~~~~DvI~~~~p~~~~~~~~~~~~~~~~~~~~ii~~h~ 136 (479)
...+.. .+||++.+.+ +...+-..++....+. ++-.|.
T Consensus 71 ~~~l~~------------~~~Dliv~ag---y~~il~~~~l~~~~~~--~iNiHp 108 (207)
T PLN02331 71 VDALRG------------AGVDFVLLAG---YLKLIPVELVRAYPRS--ILNIHP 108 (207)
T ss_pred HHHHHh------------cCCCEEEEeC---cchhCCHHHHhhCCCC--EEEEeC
No 326
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=21.15 E-value=1.9e+02 Score=24.44 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=19.7
Q ss_pred CCCEEEEEEecC--CChHHHHHHHHHc
Q 011690 320 YPRLLFIITGKG--PDKESYEEKIRRL 344 (479)
Q Consensus 320 ~p~~~l~IvG~G--~~~~~l~~~~~~~ 344 (479)
+|+.+|+++||. .+-+-|.+.+++.
T Consensus 62 fP~~kfiLIGDsgq~DpeiY~~ia~~~ 88 (100)
T PF09949_consen 62 FPERKFILIGDSGQHDPEIYAEIARRF 88 (100)
T ss_pred CCCCcEEEEeeCCCcCHHHHHHHHHHC
Confidence 999999999964 3556777777775
No 327
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.88 E-value=7.1e+02 Score=24.54 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHhhCCCcEEEEecCCCC
Q 011690 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSK 45 (479)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~La~~~G~eV~Vv~~~~~~ 45 (479)
+.+++..|-.|.+.-+...+..|.++ |+.|++=.+.+..
T Consensus 16 ~AVLllHGFTGt~~Dvr~Lgr~L~e~-GyTv~aP~ypGHG 54 (243)
T COG1647 16 RAVLLLHGFTGTPRDVRMLGRYLNEN-GYTVYAPRYPGHG 54 (243)
T ss_pred EEEEEEeccCCCcHHHHHHHHHHHHC-CceEecCCCCCCC
Confidence 45555556567778888889999996 9998876655543
No 328
>PF06449 DUF1082: Mitochondrial domain of unknown function (DUF1082); InterPro: IPR009455 The domain is found exclusively in plant mitochonchria and is a putative homing endonuclease, though such a function remains to be demonstrated. The domain is found C-terminal to the plant mitochondrial ATPase subunit 8 domain IPR003319 from INTERPRO.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0005739 mitochondrion, 0016021 integral to membrane
Probab=20.60 E-value=20 Score=25.95 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=21.8
Q ss_pred CcceEEEEEecCCCCChhHHHHHHHHHhh
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ 31 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~La~~ 31 (479)
++|+..|-++|++.++.||++++..|..+
T Consensus 6 r~kit~iscFGEIsgSrgmErnI~YlIsk 34 (51)
T PF06449_consen 6 RRKITLISCFGEISGSRGMERNILYLISK 34 (51)
T ss_pred ceEEEEEEEeceeecccccccceEEEEee
Confidence 45677788899999999998776555443
No 329
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=20.60 E-value=4.1e+02 Score=24.73 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=34.1
Q ss_pred cEEEecCCCCcchHHHHHHcCCEEEEcccCCCCCCCcHHHHHHHh------CCCcEEEecCcc
Q 011690 348 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSC 404 (479)
Q Consensus 348 ~V~f~G~~~~~~~~~~~l~~adi~v~p~~~s~~e~~p~~llEama------~G~PVIas~~~~ 404 (479)
.+.+..+ .+-...++..||++|.. ..|.|-=.-++|+++ ..+||+..+..+
T Consensus 80 ~i~~~~~---~~Rk~~m~~~sda~I~l---PGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g 136 (178)
T TIGR00730 80 LIEVNGM---HERKAMMAELADAFIAM---PGGFGTLEELFEVLTWAQLGIHQKPIILFNVNG 136 (178)
T ss_pred eEEECCH---HHHHHHHHHhCCEEEEc---CCCcchHHHHHHHHHHHHcCCCCCCEEEECCcc
Confidence 3555555 56667788899999986 333322236777775 499999998543
No 330
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=20.48 E-value=4e+02 Score=26.85 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=28.4
Q ss_pred CcceEEEEEecCCCCChhHHHHHH-HHHh-hCCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 3 RRGRACVVVLGDLGRSPRMQYQAL-SLAR-QMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~-~La~-~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
.++++.|+++-. +-.....+ .... +...+|..|..+... .....+.-+|+++.+|
T Consensus 89 ~~~ri~i~VSK~----~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-l~~~v~~~~IPfhhip 145 (287)
T COG0788 89 QRKRIAILVSKE----DHCLGDLLYRWRIGELPAEIVAVISNHDD-LRPLVERFDIPFHHIP 145 (287)
T ss_pred cCceEEEEEech----HHHHHHHHHHHhcCCcCCceEEEEcCCHH-HHHHHHHcCCCeeecc
Confidence 456677666532 23333222 1111 145565555444332 2344567799999999
No 331
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=20.42 E-value=5e+02 Score=27.33 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCCEEEEEEecC-----CChHHHHHHHHHcCCCcEEEecCC-CCcchHHHHHHc----CCEEEEcccCCCCCCCcHHHHH
Q 011690 320 YPRLLFIITGKG-----PDKESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVD 389 (479)
Q Consensus 320 ~p~~~l~IvG~G-----~~~~~l~~~~~~~~l~~V~f~G~~-~~~~~~~~~l~~----adi~v~p~~~s~~e~~p~~llE 389 (479)
+|+-.+++.|-| |.....-..+++.+++|+.++-.- +...-+..++.+ .|-+++|---|.- .|.+.++
T Consensus 134 nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I--~G~~~y~ 211 (369)
T TIGR00075 134 NPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTI--IGAKPYA 211 (369)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEE--eccchhH
Confidence 677677776655 344455556777888887776431 334556666655 3889998322211 2336666
Q ss_pred HHh--CCCcEEEecCc
Q 011690 390 MFG--CGLPVCAVSYS 403 (479)
Q Consensus 390 ama--~G~PVIas~~~ 403 (479)
.++ .++|+|.+..-
T Consensus 212 ~l~~~y~~P~VVaGFE 227 (369)
T TIGR00075 212 PIAEKYKIPIVIAGFE 227 (369)
T ss_pred HHHHHcCCCeEEeccC
Confidence 655 68998887543
No 332
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.34 E-value=1.6e+02 Score=31.43 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHcCCEEEEcccCC---CCCCCcHHHHHHHhCCCcEEEecCccc------hhccccCccEEEe--CCHHHHHHHHHHHHh
Q 011690 365 LGSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAVSYSCI------EELVKVDKNGLLF--SSSSELADQLLMLFK 433 (479)
Q Consensus 365 l~~adi~v~p~~~s---~~e~~p~~llEama~G~PVIas~~~~~------~e~i~~~~~G~l~--~~~~~la~~l~~l~~ 433 (479)
|.--|+.++|..+. ...++...+.+.+.+..|||.++.... ..+-+.|.-|++- .+++++.+.+.++-+
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk~ 89 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKT 89 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHHh
Confidence 44557888875443 333566678899999999999875443 2455567777776 458888888876654
No 333
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=20.25 E-value=3.9e+02 Score=25.05 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=21.9
Q ss_pred ChhHHHH-HHHHHhhCCCcEEEEecCCCCCcccccCCCCeEEEEee
Q 011690 18 SPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (479)
Q Consensus 18 ~~r~~~~-a~~La~~~G~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (479)
||+|... |..++++ |++|++++....-+ ..++++++++.
T Consensus 28 SG~~G~~lA~~~~~~-Ga~V~li~g~~~~~-----~p~~~~~i~v~ 67 (185)
T PF04127_consen 28 SGKMGAALAEEAARR-GAEVTLIHGPSSLP-----PPPGVKVIRVE 67 (185)
T ss_dssp -SHHHHHHHHHHHHT-T-EEEEEE-TTS---------TTEEEEE-S
T ss_pred cCHHHHHHHHHHHHC-CCEEEEEecCcccc-----ccccceEEEec
Confidence 5677654 5666664 99999998663211 13477777776
No 334
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=20.14 E-value=7e+02 Score=27.56 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCEEEEEEecC-CChHHHHHHHHHc---CC-CcEEEecCCCCcchHHH----HHHcCCEEEEcccCC--CCCCCcHHHHH
Q 011690 321 PRLLFIITGKG-PDKESYEEKIRRL---RL-KRVAFRTMWLSAEDYPL----LLGSADLGVCLHTSS--SGLDLPMKVVD 389 (479)
Q Consensus 321 p~~~l~IvG~G-~~~~~l~~~~~~~---~l-~~V~f~G~~~~~~~~~~----~l~~adi~v~p~~~s--~~e~~p~~llE 389 (479)
..+++-++|+- +..+.|+...+.+ +. .++.+.-.|++.+++.. .+..+|..++|-... ..++....+-.
T Consensus 288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~ 367 (525)
T TIGR00337 288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKY 367 (525)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHH
Confidence 35899999974 3445666555554 44 25556666788777642 477899999874332 11222234555
Q ss_pred HHhCCCcEEEecCcc
Q 011690 390 MFGCGLPVCAVSYSC 404 (479)
Q Consensus 390 ama~G~PVIas~~~~ 404 (479)
+...++|+++.-.|-
T Consensus 368 a~e~~iP~LGIClG~ 382 (525)
T TIGR00337 368 ARENNIPFLGICLGM 382 (525)
T ss_pred HHHcCCCEEEEcHHH
Confidence 667999999886554
No 335
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=20.02 E-value=1.4e+02 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCcEEEecCCC--CcchHHHHHHcCCEEEEcccCC-------CCCCCcHHHHHHHhCCCcEEEecCccc
Q 011690 335 ESYEEKIRRLRLKRVAFRTMWL--SAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYSCI 405 (479)
Q Consensus 335 ~~l~~~~~~~~l~~V~f~G~~~--~~~~~~~~l~~adi~v~p~~~s-------~~e~~p~~llEama~G~PVIas~~~~~ 405 (479)
+.+++..+++|.+ |..+-. . +.+++.+.+..||+..+.-... ..-++-..+-|+...|.|++.++.|++
T Consensus 3 ~~~~~~f~~~g~~-v~~l~~-~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 80 (154)
T PF03575_consen 3 EKFRKAFRKLGFE-VDQLDL-SDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAM 80 (154)
T ss_dssp HHHHHHHHHCT-E-EEECCC-TSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHH
T ss_pred HHHHHHHHHCCCE-EEEEec-cCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHh
Confidence 4567778888875 555543 2 2458999999999988741111 112234477888899999999987664
Done!