Query 011691
Match_columns 479
No_of_seqs 292 out of 3175
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.5E-29 3.2E-34 226.9 8.9 380 17-427 73-461 (483)
2 KOG4341 F-box protein containi 99.9 1.1E-27 2.5E-32 214.9 10.2 317 58-403 137-461 (483)
3 KOG4194 Membrane glycoprotein 99.8 6.3E-22 1.4E-26 185.0 2.7 297 58-405 124-427 (873)
4 PLN00113 leucine-rich repeat r 99.8 7.4E-19 1.6E-23 190.4 13.7 205 57-289 138-342 (968)
5 PLN00113 leucine-rich repeat r 99.8 2E-18 4.4E-23 187.0 13.0 248 58-343 117-366 (968)
6 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-16 3.9E-21 149.9 23.8 167 228-404 137-317 (319)
7 KOG4194 Membrane glycoprotein 99.7 1.4E-19 2.9E-24 169.6 -0.8 324 58-426 77-424 (873)
8 KOG2120 SCF ubiquitin ligase, 99.7 2.1E-17 4.6E-22 142.8 7.1 250 58-336 135-390 (419)
9 KOG2120 SCF ubiquitin ligase, 99.7 7.6E-17 1.6E-21 139.4 10.3 255 153-427 138-396 (419)
10 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-14 3.5E-19 136.6 23.9 259 136-405 8-289 (319)
11 KOG1909 Ran GTPase-activating 99.7 7.1E-16 1.5E-20 136.5 12.1 206 201-418 90-325 (382)
12 PLN03210 Resistant to P. syrin 99.6 2.8E-15 6.2E-20 163.1 13.1 125 58-212 610-734 (1153)
13 KOG0444 Cytoskeletal regulator 99.6 4.4E-17 9.5E-22 154.2 -6.1 337 5-405 17-373 (1255)
14 KOG1909 Ran GTPase-activating 99.6 2.9E-14 6.2E-19 126.4 11.0 217 149-390 90-322 (382)
15 KOG1947 Leucine rich repeat pr 99.5 2.7E-13 5.9E-18 135.9 13.1 255 137-405 174-438 (482)
16 KOG1947 Leucine rich repeat pr 99.5 2.9E-13 6.3E-18 135.7 12.2 246 146-405 156-412 (482)
17 KOG0444 Cytoskeletal regulator 99.5 2.3E-15 5.1E-20 142.7 -3.8 201 148-381 170-376 (1255)
18 PLN03210 Resistant to P. syrin 99.4 7.7E-13 1.7E-17 144.3 10.4 247 114-407 631-906 (1153)
19 COG5238 RNA1 Ran GTPase-activa 99.2 1.3E-10 2.8E-15 100.0 10.1 169 225-404 89-282 (388)
20 KOG0618 Serine/threonine phosp 99.2 2.9E-12 6.3E-17 127.3 -1.7 127 253-405 359-487 (1081)
21 KOG0618 Serine/threonine phosp 99.1 4.7E-12 1E-16 125.8 -1.3 128 204-344 360-487 (1081)
22 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 112.3 1.9 208 58-288 120-335 (505)
23 KOG3207 Beta-tubulin folding c 99.1 5E-11 1.1E-15 109.1 2.0 211 115-343 119-336 (505)
24 COG5238 RNA1 Ran GTPase-activa 98.9 3.9E-08 8.6E-13 84.9 15.1 150 247-405 86-253 (388)
25 PRK15387 E3 ubiquitin-protein 98.9 2.7E-09 5.9E-14 109.0 5.9 245 58-388 221-465 (788)
26 PRK15387 E3 ubiquitin-protein 98.8 6.1E-09 1.3E-13 106.5 7.9 256 59-405 201-456 (788)
27 KOG3665 ZYG-1-like serine/thre 98.8 3.9E-08 8.4E-13 100.2 10.8 215 58-288 59-284 (699)
28 KOG3665 ZYG-1-like serine/thre 98.7 8.5E-08 1.8E-12 97.7 12.0 158 177-340 122-282 (699)
29 KOG4237 Extracellular matrix p 98.7 1.5E-09 3.3E-14 98.3 -1.7 147 7-188 53-199 (498)
30 KOG2982 Uncharacterized conser 98.7 1.5E-08 3.2E-13 88.7 4.2 109 307-426 173-287 (418)
31 PRK15370 E3 ubiquitin-protein 98.6 4.2E-07 9.1E-12 93.7 11.0 34 58-95 198-231 (754)
32 PRK15370 E3 ubiquitin-protein 98.5 4.8E-07 1E-11 93.3 10.1 205 151-405 220-426 (754)
33 KOG0472 Leucine-rich repeat pr 98.5 2.3E-09 4.9E-14 97.4 -6.0 84 174-264 225-308 (565)
34 KOG4237 Extracellular matrix p 98.5 1.6E-08 3.5E-13 91.8 -0.9 84 307-405 274-357 (498)
35 PF14580 LRR_9: Leucine-rich r 98.4 2.6E-08 5.7E-13 83.2 -1.4 129 254-404 20-150 (175)
36 KOG2982 Uncharacterized conser 98.4 4.6E-07 1E-11 79.5 5.4 90 171-263 65-156 (418)
37 KOG0472 Leucine-rich repeat pr 98.4 8.8E-08 1.9E-12 87.3 0.7 103 277-405 433-539 (565)
38 PF14580 LRR_9: Leucine-rich r 98.3 5.8E-07 1.2E-11 75.2 3.3 40 226-266 86-126 (175)
39 KOG1259 Nischarin, modulator o 98.2 7E-07 1.5E-11 78.5 3.0 145 251-422 282-434 (490)
40 KOG3864 Uncharacterized conser 98.2 1.6E-06 3.4E-11 72.1 4.8 104 308-423 102-209 (221)
41 KOG3864 Uncharacterized conser 98.1 2.8E-06 6.2E-11 70.6 4.3 89 254-347 102-190 (221)
42 KOG1259 Nischarin, modulator o 98.0 1.8E-06 4E-11 75.9 1.0 127 226-378 282-410 (490)
43 KOG4308 LRR-containing protein 97.7 2.5E-05 5.5E-10 76.5 4.2 315 61-405 89-443 (478)
44 PF13855 LRR_8: Leucine rich r 97.6 1.3E-05 2.8E-10 54.7 -0.2 59 204-264 2-60 (61)
45 KOG4658 Apoptotic ATPase [Sign 97.6 3.7E-05 8E-10 80.9 2.5 236 149-405 543-781 (889)
46 KOG4658 Apoptotic ATPase [Sign 97.6 6.9E-05 1.5E-09 78.9 4.4 230 58-321 544-784 (889)
47 KOG0617 Ras suppressor protein 97.5 1.1E-06 2.3E-11 70.9 -7.0 78 152-237 34-111 (264)
48 KOG1859 Leucine-rich repeat pr 97.5 1.6E-05 3.5E-10 78.4 -1.1 108 148-265 184-291 (1096)
49 PF13855 LRR_8: Leucine rich r 97.5 2.8E-05 6E-10 53.0 0.3 59 228-289 1-59 (61)
50 KOG1859 Leucine-rich repeat pr 97.4 1.2E-05 2.7E-10 79.1 -3.0 106 226-344 185-290 (1096)
51 KOG0617 Ras suppressor protein 97.4 7E-07 1.5E-11 72.0 -10.1 17 250-266 53-69 (264)
52 KOG4308 LRR-containing protein 97.3 6E-05 1.3E-09 73.9 0.0 218 153-382 89-333 (478)
53 KOG2739 Leucine-rich acidic nu 97.0 0.00034 7.4E-09 61.0 1.7 110 278-405 42-154 (260)
54 KOG2739 Leucine-rich acidic nu 96.7 9.7E-05 2.1E-09 64.3 -3.4 63 278-343 64-126 (260)
55 PLN03150 hypothetical protein; 96.6 0.0042 9.1E-08 64.0 6.5 105 230-345 420-527 (623)
56 smart00367 LRR_CC Leucine-rich 96.6 0.0032 6.9E-08 34.2 3.1 22 333-354 2-23 (26)
57 PLN03150 hypothetical protein; 96.6 0.005 1.1E-07 63.4 6.8 106 254-379 419-527 (623)
58 PF12799 LRR_4: Leucine Rich r 96.3 0.007 1.5E-07 37.7 3.9 38 228-267 1-38 (44)
59 smart00367 LRR_CC Leucine-rich 96.3 0.0049 1.1E-07 33.4 2.7 25 366-390 1-25 (26)
60 PRK15386 type III secretion pr 96.1 0.013 2.9E-07 55.8 6.4 138 201-378 50-188 (426)
61 COG4886 Leucine-rich repeat (L 96.0 0.0052 1.1E-07 59.9 3.6 172 82-289 114-287 (394)
62 KOG1644 U2-associated snRNP A' 96.0 0.0045 9.7E-08 52.0 2.4 86 307-405 64-151 (233)
63 KOG2123 Uncharacterized conser 95.9 0.002 4.4E-08 56.7 -0.0 54 58-125 18-71 (388)
64 KOG1644 U2-associated snRNP A' 95.9 0.0073 1.6E-07 50.8 3.1 40 226-266 62-101 (233)
65 PRK15386 type III secretion pr 95.8 0.023 5.1E-07 54.1 6.5 143 219-404 43-187 (426)
66 COG4886 Leucine-rich repeat (L 95.8 0.01 2.2E-07 57.9 4.2 59 204-266 141-199 (394)
67 PF12799 LRR_4: Leucine Rich r 95.5 0.013 2.9E-07 36.4 2.6 35 59-95 1-35 (44)
68 KOG2123 Uncharacterized conser 95.0 0.0072 1.6E-07 53.3 0.2 114 227-354 18-135 (388)
69 KOG0531 Protein phosphatase 1, 94.1 0.0071 1.5E-07 59.2 -2.0 106 149-266 93-199 (414)
70 KOG4579 Leucine-rich repeat (L 94.1 0.015 3.2E-07 45.8 0.1 63 223-289 48-110 (177)
71 PF13516 LRR_6: Leucine Rich r 94.0 0.059 1.3E-06 28.4 2.3 22 253-274 2-23 (24)
72 PF13516 LRR_6: Leucine Rich r 93.9 0.047 1E-06 28.8 1.8 19 334-353 3-21 (24)
73 KOG0531 Protein phosphatase 1, 92.2 0.043 9.3E-07 53.8 0.1 100 201-316 93-195 (414)
74 KOG4579 Leucine-rich repeat (L 91.8 0.068 1.5E-06 42.2 0.8 112 153-271 29-141 (177)
75 KOG0532 Leucine-rich repeat (L 90.9 0.016 3.5E-07 56.3 -4.1 195 60-289 76-270 (722)
76 smart00368 LRR_RI Leucine rich 89.5 0.53 1.2E-05 25.9 2.9 23 253-275 2-24 (28)
77 smart00368 LRR_RI Leucine rich 88.8 0.72 1.6E-05 25.3 3.1 22 334-356 3-24 (28)
78 KOG3763 mRNA export factor TAP 86.6 1.4 2.9E-05 43.4 5.4 85 329-423 214-306 (585)
79 KOG0532 Leucine-rich repeat (L 86.0 0.09 1.9E-06 51.5 -2.7 153 224-404 117-270 (722)
80 PF13306 LRR_5: Leucine rich r 82.4 0.41 9E-06 37.9 0.0 10 150-159 34-43 (129)
81 PF13504 LRR_7: Leucine rich r 82.1 1.1 2.3E-05 21.3 1.4 12 254-265 2-13 (17)
82 PF13306 LRR_5: Leucine rich r 79.5 0.48 1E-05 37.5 -0.5 9 227-235 34-42 (129)
83 KOG3763 mRNA export factor TAP 75.7 3.9 8.4E-05 40.4 4.2 66 277-346 216-283 (585)
84 PF00560 LRR_1: Leucine Rich R 57.7 5.5 0.00012 20.2 0.8 13 254-266 1-13 (22)
85 smart00370 LRR Leucine-rich re 54.9 11 0.00023 19.9 1.7 15 253-267 2-16 (26)
86 smart00369 LRR_TYP Leucine-ric 54.9 11 0.00023 19.9 1.7 15 253-267 2-16 (26)
87 KOG3735 Tropomodulin and leiom 52.5 21 0.00045 33.1 4.1 80 277-358 196-279 (353)
88 PF07723 LRR_2: Leucine Rich R 50.7 12 0.00026 20.1 1.5 8 309-316 2-9 (26)
89 KOG4242 Predicted myosin-I-bin 48.0 27 0.00059 34.1 4.2 39 365-404 438-478 (553)
90 smart00365 LRR_SD22 Leucine-ri 38.9 29 0.00063 18.7 1.8 14 253-266 2-15 (26)
91 KOG3735 Tropomodulin and leiom 38.6 87 0.0019 29.3 5.8 100 295-403 188-292 (353)
92 PHA02608 67 prohead core prote 35.4 36 0.00079 23.7 2.2 14 449-462 38-51 (80)
93 KOG3214 Uncharacterized Zn rib 33.2 6.4 0.00014 28.8 -1.7 6 450-455 70-75 (109)
94 PF05756 S-antigen: S-antigen 30.6 29 0.00064 24.0 1.2 14 449-462 55-68 (94)
95 PF07735 FBA_2: F-box associat 21.3 2.7E+02 0.0059 18.8 5.7 10 392-401 60-69 (70)
96 smart00364 LRR_BAC Leucine-ric 20.8 61 0.0013 17.5 1.0 14 253-266 2-15 (26)
97 COG5129 MAK16 Nuclear protein 20.1 51 0.0011 28.3 1.0 12 447-458 227-238 (303)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=226.88 Aligned_cols=380 Identities=21% Similarity=0.272 Sum_probs=300.9
Q ss_pred HHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeec--CccChhHHHHHHHcCC-CccEEeccC
Q 011691 17 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSV--DYITDAMVGTISQGLV-SLTHLDLRD 93 (479)
Q Consensus 17 ~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~-~L~~L~l~~ 93 (479)
..+||.+....++++..|.+.+..+++.+ |...... -.+.++.+|.. ..+...++..+.+++. .|+.|.++|
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG 147 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRG 147 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhccccccccccc
Confidence 34566777777777766665554433321 1111111 22334444441 2334455566666553 688899998
Q ss_pred CCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHH
Q 011691 94 APLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 172 (479)
Q Consensus 94 ~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 172 (479)
|. .+.+..+..+. .||++++|.+. ++..+++..+..++..|++|+.|++..|..+++..++.+
T Consensus 148 ~r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 148 CR--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred cc--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 85 34454555443 78899888884 467888888888888999999999999989999888888
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-
Q 011691 173 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS- 250 (479)
Q Consensus 173 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~- 250 (479)
...|++|+.|+++.|+.++..++..+.+.+..++.+.+.||...+...+.... .++-+..+++..|+.+++.....+.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 89999999999999999888888888888888899888899888877776554 6777888888889889888876666
Q ss_pred cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHH
Q 011691 251 SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 329 (479)
Q Consensus 251 ~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 329 (479)
.+..|+.|..+++ .+++..+..+++ ++++|+.|.+++|.++++.++..+...| +.|+.+++..|..+.+..+..++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhc
Confidence 6788999999886 788888999999 8999999999999999999999999988 89999999999888888888899
Q ss_pred hcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CH
Q 011691 330 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NR 407 (479)
Q Consensus 330 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~ 407 (479)
.+||.|+.|.+++|..++|.|+..+..-.. ....|+.+.+++|+.+++..+.++.. |++|+.+++.+|. ..
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTK 441 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhh
Confidence 999999999999999999998888776333 67889999999999999999998876 9999999999987 67
Q ss_pred HHHHHHHhcCCCceeeccCc
Q 011691 408 DILDALARSRPFLNVACRGE 427 (479)
Q Consensus 408 ~~~~~~~~~~p~l~~~~~~~ 427 (479)
..+.+++...|.+++-....
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhHHHHhhCccceehhhcc
Confidence 78899999999988765544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=214.85 Aligned_cols=317 Identities=24% Similarity=0.388 Sum_probs=286.9
Q ss_pred CCCCcEEEeec-CccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEecccccccccccc
Q 011691 58 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
...||.|.+++ ..+.+..+..+...||++++|.+.+|. ++++..+..+. .|++|++|++.. |
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~~l~~l~L~~--------c 200 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCRKLRHLNLHS--------C 200 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcchhhhhhhcc--------c
Confidence 35789999996 578889999999999999999999995 68888888887 899999999954 6
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCC
Q 011691 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..+++..++.++..|++|+.|++++|+.+...++..+.+++..++.+...||.......+..+...++-+.++++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 88999999999999999999999999999998899999999999999888999999999988888999999999999999
Q ss_pred CCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCC
Q 011691 216 LTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRL 292 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l 292 (479)
+++..+..+. .+..|+.|..++|..+++..+..++ ++++|+.|-+..| .+++.++..++. .++.|+.+++.+|..+
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhccccccee
Confidence 9999877766 7899999999999999999888887 7899999999998 699999999999 9999999999999988
Q ss_pred CHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHh---cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCc
Q 011691 293 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 369 (479)
Q Consensus 293 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L 369 (479)
++..+..++..| +.|+.+.++.|..++++++..+.. +...|+.+.+++|+.+++..++.+.. |++|
T Consensus 360 ~d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~---------c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI---------CRNL 428 (483)
T ss_pred hhhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh---------Cccc
Confidence 888899999988 999999999999999998886643 45689999999999999999999885 9999
Q ss_pred cEEEccCCCCCCHHHHHHhhccCCCCccEEEecC
Q 011691 370 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTG 403 (479)
Q Consensus 370 ~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~ 403 (479)
+.+++-+|..++..++..+.. .+|+++...+..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFAT-HLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHh-hCccceehhhcc
Confidence 999999999999999999987 899998877654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-22 Score=184.99 Aligned_cols=297 Identities=19% Similarity=0.180 Sum_probs=182.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
..+|+.|+|..|.|+...-+.+. .+|.|++|||+.|. ++....+.+..-.++++|++++ +.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~---------N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLAS---------NR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeecc---------cc
Confidence 56899999998888776666664 78999999999873 3332333344456789999874 44
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011691 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
++......+ ..+.+|..|.|+. ++++....+.+ +.+++|+.|++..+..--..+ .-++.+++|+.|.|.. +.+.
T Consensus 185 It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqr-N~I~ 258 (873)
T KOG4194|consen 185 ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQR-NDIS 258 (873)
T ss_pred ccccccccc-cccchheeeeccc-CcccccCHHHh-hhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhh-cCcc
Confidence 444333333 2356788888888 67776644443 678888888887665311111 1234566777777766 3443
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---H
Q 011691 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---D 294 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~ 294 (479)
...-..+-.+.++++|++.. +.+....-..+-++++|+.|++++|.|.......+.. +++|+.|+++.+ .++ .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred cccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEecccc-ccccCCh
Confidence 33222334567777777776 3555444445556777777777777666655555555 777777777763 333 4
Q ss_pred HHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCC----HHHHHHHHhccccCCCCCCCCcc
Q 011691 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG----DTSVIALASMLVDDDRWYGSSIR 370 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~~~~~~~~~~~~L~ 370 (479)
..+..+ ..|++|.|+. +.++...-.+ +..+.+|++|++++| .+. | +... .. .+++|+
T Consensus 335 ~sf~~L------~~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N-~ls~~IED-aa~~-f~--------gl~~Lr 395 (873)
T KOG4194|consen 335 GSFRVL------SQLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSN-ELSWCIED-AAVA-FN--------GLPSLR 395 (873)
T ss_pred hHHHHH------HHhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCC-eEEEEEec-chhh-hc--------cchhhh
Confidence 445555 5677777776 4554322222 224567777777766 322 2 1111 11 466777
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 371 LLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 371 ~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.|.+.+|+ +....-.++.. +++|++|++.+|.
T Consensus 396 kL~l~gNq-lk~I~krAfsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 396 KLRLTGNQ-LKSIPKRAFSG--LEALEHLDLGDNA 427 (873)
T ss_pred heeecCce-eeecchhhhcc--CcccceecCCCCc
Confidence 77777776 66655566654 7777777777664
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=7.4e-19 Score=190.41 Aligned_cols=205 Identities=20% Similarity=0.153 Sum_probs=97.2
Q ss_pred CCCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccc
Q 011691 57 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 57 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+++|++|+|+.+.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n--------- 198 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASN--------- 198 (968)
T ss_pred ccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCC---------
Confidence 47788888888776664444444 367888888888774 22222234556667777777532
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCC
Q 011691 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
.+.......+ ..+++|+.|+++++ .+....... +..+++|++|++++|..... +......+++|+.|+++++ .+
T Consensus 199 ~l~~~~p~~l-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l 272 (968)
T PLN00113 199 QLVGQIPREL-GQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQN-KL 272 (968)
T ss_pred CCcCcCChHH-cCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCC-ee
Confidence 1111111111 33555666666553 333221222 23455666666655432110 1112234445555555553 22
Q ss_pred CHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011691 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.......+..+++|+.|++++| .+.......+.++++|+.|++++|.+.......+.. +++|+.|++++|
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n 342 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSN 342 (968)
T ss_pred eccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCC
Confidence 2211222334555555555553 233222333445555555555555444322222222 555555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=2e-18 Score=186.99 Aligned_cols=248 Identities=19% Similarity=0.103 Sum_probs=131.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+++|++|+|+++.+...... ..+++|++|++++|. ++......+..+++|++|+++++ .
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~---------~~~~~p~~~~~l~~L~~L~L~~n---------~ 175 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM---------LSGEIPNDIGSFSSLKVLDLGGN---------V 175 (968)
T ss_pred CCCCCEEECcCCccccccCc---cccCCCCEEECcCCc---------ccccCChHHhcCCCCCEEECccC---------c
Confidence 45566666655544332111 135566666666553 22222334556677777777541 1
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011691 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+.......+ ..+++|+.|++++| .+....... +..+++|+.|+++++..... +......+++|++|++++| .+.
T Consensus 176 l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~ 249 (968)
T PLN00113 176 LVGKIPNSL-TNLTSLEFLTLASN-QLVGQIPRE-LGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYN-NLT 249 (968)
T ss_pred ccccCChhh-hhCcCCCeeeccCC-CCcCcCChH-HcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCc-eec
Confidence 111111111 34677777777774 443322222 24567777777776543211 1112345667777777774 333
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC--HH
Q 011691 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DK 295 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~--~~ 295 (479)
......++.+++|+.|++++| .+.......+..+++|+.|++++|.+.......+. .+++|+.|+++++.... ..
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred cccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCCh
Confidence 333334567777778877774 44433444566777788888877766543333333 37778888887754221 12
Q ss_pred HHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCC
Q 011691 296 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 296 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
.+.. +++|+.|++++| .+.......+ ..+++|+.|++++|
T Consensus 327 ~~~~------l~~L~~L~L~~n-~l~~~~p~~l-~~~~~L~~L~Ls~n 366 (968)
T PLN00113 327 ALTS------LPRLQVLQLWSN-KFSGEIPKNL-GKHNNLTVLDLSTN 366 (968)
T ss_pred hHhc------CCCCCEEECcCC-CCcCcCChHH-hCCCCCcEEECCCC
Confidence 2222 267788887774 4432211122 24667777777766
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.8e-16 Score=149.88 Aligned_cols=167 Identities=26% Similarity=0.250 Sum_probs=87.0
Q ss_pred CCCCEEecCCCCCCChHH----HHhhhcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHh
Q 011691 228 TGIKVLDLRDCKNLGDEA----LRAISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALF 301 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~ 301 (479)
++|+.|++++| .++... ...+..+++|+.|++++|.+++.++..+.. ..+++|++|++++| .+++.+...+.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 55666666654 233222 122334556666666666665544443332 02346666666664 34444333322
Q ss_pred cc-CCCCCccEEeccCCCCCCHHHHHHHHhcC----CCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccC
Q 011691 302 DG-TSKLQLQELDLSNLPHLSDNGILTLATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 302 ~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.. ..+++|++|++++| .+++.++..+...+ +.|+.|++.+| .+++.+...+..... .+++|+.+++++
T Consensus 215 ~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~ 287 (319)
T cd00116 215 ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRG 287 (319)
T ss_pred HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCC
Confidence 11 11266777777764 56655555554443 56777777776 666555555544333 356677777777
Q ss_pred CCCCCHHHHHHhhcc--CC-CCccEEEecCC
Q 011691 377 CGGITQLAFRWLKKP--YF-PRLRWLGVTGS 404 (479)
Q Consensus 377 c~~i~~~~~~~l~~~--~~-~~L~~L~l~~~ 404 (479)
|. +++.+...+... .. +.|+.+++.++
T Consensus 288 N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 288 NK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 76 665544333320 12 46666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.4e-19 Score=169.57 Aligned_cols=324 Identities=20% Similarity=0.174 Sum_probs=163.5
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhh-cCCCccEEeccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
.+.-+.|++++|.+++..+..+. .+|+|+.+.+..|. ++ .++.++ ...+|++|++.+ +...
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~---------Lt--~IP~f~~~sghl~~L~L~~------N~I~ 138 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNE---------LT--RIPRFGHESGHLEKLDLRH------NLIS 138 (873)
T ss_pred ccceeeeeccccccccCcHHHHh-cCCcceeeeeccch---------hh--hcccccccccceeEEeeec------cccc
Confidence 34566777777777666555553 67777777777653 11 133232 334466666653 2223
Q ss_pred ccchHHHHHHH--------------------HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHH
Q 011691 137 RVNDLGILLMA--------------------DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFH 196 (479)
Q Consensus 137 ~~~~~~l~~l~--------------------~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 196 (479)
.++...+..+. ..-.++++|+|++ +.++......+ ..+.+|..|.++.+.. +..+..
T Consensus 139 sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F-~~lnsL~tlkLsrNri-ttLp~r 215 (873)
T KOG4194|consen 139 SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHF-DSLNSLLTLKLSRNRI-TTLPQR 215 (873)
T ss_pred cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccc-cccchheeeecccCcc-cccCHH
Confidence 33333332211 0113344444444 34443322222 2233444444444331 111111
Q ss_pred HHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhh
Q 011691 197 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLT 276 (479)
Q Consensus 197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~ 276 (479)
.++.+++|+.|+|.. +.+.......+..+++|+.|.+..+ .+..-.-..+-.+.++++|+|+.|.+....-..+.
T Consensus 216 -~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-- 290 (873)
T KOG4194|consen 216 -SFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-- 290 (873)
T ss_pred -Hhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhccccc--
Confidence 222344555555544 3333222223334555555544432 22211112233456666777776655433222222
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHh
Q 011691 277 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 356 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 356 (479)
++.+|+.|+++.+ .+.......+. .+ ++|+.|+|++ +.++.-....+. .+..|+.|.+++| .++...--.+.
T Consensus 291 gLt~L~~L~lS~N-aI~rih~d~Ws-ft--qkL~~LdLs~-N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~e~af~- 362 (873)
T KOG4194|consen 291 GLTSLEQLDLSYN-AIQRIHIDSWS-FT--QKLKELDLSS-NRITRLDEGSFR-VLSQLEELNLSHN-SIDHLAEGAFV- 362 (873)
T ss_pred ccchhhhhccchh-hhheeecchhh-hc--ccceeEeccc-cccccCChhHHH-HHHHhhhhccccc-chHHHHhhHHH-
Confidence 3677777777762 23211111111 01 7889999988 566532222222 3567888889888 54433222222
Q ss_pred ccccCCCCCCCCccEEEccCCCCCCH---HHHHHhhccCCCCccEEEecCCCCHHHHHHHHhcCCCceeeccC
Q 011691 357 MLVDDDRWYGSSIRLLDLYNCGGITQ---LAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRG 426 (479)
Q Consensus 357 ~~~~~~~~~~~~L~~L~l~~c~~i~~---~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~l~~~~~~ 426 (479)
.+++|++|+++.|. ++. .+-..+. .+|+|++|.+.||....+..+.....+.++....+
T Consensus 363 --------~lssL~~LdLr~N~-ls~~IEDaa~~f~--gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 363 --------GLSSLHKLDLRSNE-LSWCIEDAAVAFN--GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred --------HhhhhhhhcCcCCe-EEEEEecchhhhc--cchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 57889999999887 442 2333333 48999999999998665655555666666655444
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-17 Score=142.76 Aligned_cols=250 Identities=22% Similarity=0.277 Sum_probs=153.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHh-hh-cCCCccEEecccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ-IN-QHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-l~-~~~~L~~L~l~~~~~~~~~~~ 135 (479)
-...+.+|+.+..+....+..+.+ .....+.+... .+.+..+.. +. .-..|++|++++
T Consensus 135 e~lW~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~---------~~~~prlae~~~~frsRlq~lDLS~--------- 194 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIHPDVLGRLLS--RGVIVFRLARS---------FMDQPRLAEHFSPFRSRLQHLDLSN--------- 194 (419)
T ss_pred ccceeeeccCCCccChhHHHHHHh--CCeEEEEcchh---------hhcCchhhhhhhhhhhhhHHhhcch---------
Confidence 345678888888888888877764 34455555542 122221221 11 123588999974
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCC
Q 011691 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 215 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (479)
..++...+..+.+.|++|+.|.+.+ ..+.+.....++ .-.+|+.|+++.|..++..++..+...|..|.+|++++|..
T Consensus 195 s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 195 SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 6778888888888899999999998 688887666654 46789999999988888888888888898999999999866
Q ss_pred CCHHHHHHhh-CCCCCCEEecCCCCC-CChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCC
Q 011691 216 LTNHAIKSLA-SNTGIKVLDLRDCKN-LGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKR 291 (479)
Q Consensus 216 ~~~~~~~~l~-~~~~L~~L~l~~~~~-l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~ 291 (479)
.++..-..+. --++|+.|+++||.. +....+..+. ++|+|..|++++| .+++..+..+.+ ++.|++|.++.|..
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQHLSLSRCYD 350 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchheeeehhhhcC
Confidence 6555333333 246777777777632 2333333332 5555555555554 444444444444 55555555555555
Q ss_pred CCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCC
Q 011691 292 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPIS 336 (479)
Q Consensus 292 l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 336 (479)
+.+..+..+. ..|+|.+|++.+| +++..+..+...|++|+
T Consensus 351 i~p~~~~~l~---s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 351 IIPETLLELN---SKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred CChHHeeeec---cCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 5444433332 2245555555543 33334444444444443
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.6e-17 Score=139.39 Aligned_cols=255 Identities=19% Similarity=0.252 Sum_probs=188.7
Q ss_pred CCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHH-HHHhcCCCccEEEcCCCCCCCHHHHHH-hhCCCCC
Q 011691 153 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFH-DISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGI 230 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L 230 (479)
=+.+++.+ ..+.......+.+ .....+.+.... +.+..+. .+.-.-..|++|+++. ..++...+.. +.+|.+|
T Consensus 138 W~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 138 WQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKL 212 (419)
T ss_pred eeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhh
Confidence 35566666 4555544544432 344444443211 1111111 1122234688999988 5666655543 5589999
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCc
Q 011691 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL 309 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 309 (479)
+.|++.+ ..+.+.....++...+|+.|+++.| .++..++..+.. +|..|..|+++.|...++. +..+..... ++|
T Consensus 213 k~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~his-e~l 288 (419)
T KOG2120|consen 213 KNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAHIS-ETL 288 (419)
T ss_pred hhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhhhc-hhh
Confidence 9999988 5788888888888899999999987 788888888888 8999999999999766554 333222212 899
Q ss_pred cEEeccCC-CCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHh
Q 011691 310 QELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 388 (479)
Q Consensus 310 ~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l 388 (479)
+.|++++| .++....+..+.+.||+|..|+++.|..+++..+..+. .++.|++|.++.|..+....+..+
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---------kf~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------KFNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---------hcchheeeehhhhcCCChHHeeee
Confidence 99999998 34566678888899999999999999888886666665 489999999999998888777777
Q ss_pred hccCCCCccEEEecCCCCHHHHHHHHhcCCCceeeccCc
Q 011691 389 KKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGE 427 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 427 (479)
.. .|+|.+|++.||......+-+.+..|++++.+...
T Consensus 360 ~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 360 NS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred cc--CcceEEEEeccccCchHHHHHHHhCccccccceee
Confidence 65 89999999999998889999999999998877653
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.6e-14 Score=136.57 Aligned_cols=259 Identities=23% Similarity=0.218 Sum_probs=173.5
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHH---HHHhCCCCceEEecCCCCCC-HHHH---HHHHhcCCCccEE
Q 011691 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKT---ILHSCSNLYKLRVSHGTQLT-DLVF---HDISATSLSLTHV 208 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~~~L~~L 208 (479)
..+.......+...+++|+.|++++| .+++.+... .....++|++|.+.++.... ...+ ......+++|++|
T Consensus 8 ~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 8 ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34443334444455677999999985 665544333 34456778999888765321 2222 2233457799999
Q ss_pred EcCCCCCCCHHHHHHhhCC---CCCCEEecCCCCCCChHHHH----hhhcC-CCCcEEEccCCCCchHHHHHHHh--hcC
Q 011691 209 CLRWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL--TVI 278 (479)
Q Consensus 209 ~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~----~l~~l-~~L~~L~l~~~~l~~~~l~~l~~--~~~ 278 (479)
++++|. +.......+..+ ++|++|++++| .+.+.+.. .+..+ ++|+.|++++|.++..+...+.. ..+
T Consensus 87 ~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 87 DLSDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred EccCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 999964 433233333333 55999999996 46654443 34466 89999999999988554433322 146
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccC-CCCCccEEeccCCCCCCHHHHHHH---HhcCCCCCEEecCCCCCCCHHHHHHH
Q 011691 279 TSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 279 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|++|++++|. +++.++..++... .+++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..+
T Consensus 165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l 241 (319)
T cd00116 165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAAL 241 (319)
T ss_pred CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHH
Confidence 799999999964 7665555443221 2269999999996 7776665543 445789999999999 7898888887
Q ss_pred HhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011691 355 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 405 (479)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 405 (479)
+..... ..++|+.|++++|. +++.+...+.. +.+++|+.+++++|.
T Consensus 242 ~~~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 242 ASALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 763321 24799999999998 87655544432 246899999999987
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.66 E-value=7.1e-16 Score=136.50 Aligned_cols=206 Identities=24% Similarity=0.341 Sum_probs=140.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHh----hCCCCCCEEecCCCCCCChHHHHh-------------hhcCCCCcEEEccCC
Q 011691 201 TSLSLTHVCLRWCNLLTNHAIKSL----ASNTGIKVLDLRDCKNLGDEALRA-------------ISSLPQLKILLLDGS 263 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~-------------l~~l~~L~~L~l~~~ 263 (479)
.+|+|+.|+|+. +-++..++..+ .++..|++|.+.+| .++..+-.. .+.-++|+.+....|
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 455666676666 45554444433 35666777776665 454443222 124578888888888
Q ss_pred CCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHH---hccCCCCCccEEeccCCCCCCHHHHHHHH---hcCCCC
Q 011691 264 DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLA---TCRVPI 335 (479)
Q Consensus 264 ~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L 335 (479)
.+.+.+...+.. ..++.|+.+.+.. +.+..+++..+ +..| ++|+.|+|.. +.++..+-.+++ ..+++|
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~--~~LevLdl~D-Ntft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHC--PHLEVLDLRD-NTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhC--Ccceeeeccc-chhhhHHHHHHHHHhcccchh
Confidence 777766544433 1467888888877 44665555333 3345 8999999988 678766655443 456789
Q ss_pred CEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC---CHHHH
Q 011691 336 SELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDIL 410 (479)
Q Consensus 336 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~ 410 (479)
+.|+++.| .+.+.|..++..++.. ..|+|+.|.+.+|. |+..+...+.. +..|.|+.|++.+|. ....+
T Consensus 244 ~El~l~dc-ll~~~Ga~a~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i 317 (382)
T KOG1909|consen 244 RELNLGDC-LLENEGAIAFVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGI 317 (382)
T ss_pred eeeccccc-ccccccHHHHHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhH
Confidence 99999999 8898888888887766 68899999999998 88877665543 247899999999997 34456
Q ss_pred HHHHhcCC
Q 011691 411 DALARSRP 418 (479)
Q Consensus 411 ~~~~~~~p 418 (479)
..++..++
T Consensus 318 ~ei~~~~~ 325 (382)
T KOG1909|consen 318 DEIASKFD 325 (382)
T ss_pred HHHHHhcc
Confidence 66665554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=2.8e-15 Score=163.07 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
+.+|+.|++..+.+.. +..-...+++|+.|+|+++..+. .++.+..+++|++|++.+| ..
T Consensus 610 ~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~----------~ip~ls~l~~Le~L~L~~c--------~~ 669 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLK----------EIPDLSMATNLETLKLSDC--------SS 669 (1153)
T ss_pred ccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcC----------cCCccccCCcccEEEecCC--------CC
Confidence 4577777777655443 11112356777777777664321 1223455677777777543 11
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCC
Q 011691 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 212 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (479)
+.. +......+++|+.|++++|..+..... . ..+++|+.|++++|..+... ....++|+.|++.+
T Consensus 670 L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~-~--i~l~sL~~L~Lsgc~~L~~~-----p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 670 LVE--LPSSIQYLNKLEDLDMSRCENLEILPT-G--INLKSLYRLNLSGCSRLKSF-----PDISTNISWLDLDE 734 (1153)
T ss_pred ccc--cchhhhccCCCCEEeCCCCCCcCccCC-c--CCCCCCCEEeCCCCCCcccc-----ccccCCcCeeecCC
Confidence 111 111123466777777777655543211 1 14566777777766543221 11234566666655
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=4.4e-17 Score=154.21 Aligned_cols=337 Identities=19% Similarity=0.192 Sum_probs=154.8
Q ss_pred ccccchhhHHHHHHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCC
Q 011691 5 SLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLV 84 (479)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 84 (479)
-+|+...|..-.+.+. .++.|.+.......++.- ...+.+|++|.+..|.+.. ....+ ..+|
T Consensus 17 NDFsg~~FP~~v~qMt-~~~WLkLnrt~L~~vPeE---------------L~~lqkLEHLs~~HN~L~~-vhGEL-s~Lp 78 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMT-QMTWLKLNRTKLEQVPEE---------------LSRLQKLEHLSMAHNQLIS-VHGEL-SDLP 78 (1255)
T ss_pred CcCCCCcCchhHHHhh-heeEEEechhhhhhChHH---------------HHHHhhhhhhhhhhhhhHh-hhhhh-ccch
Confidence 3444444444444555 677777664322222222 2335667777666555432 12222 2567
Q ss_pred CccEEeccCCCCCCCccccccchHHHH-hhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcc
Q 011691 85 SLTHLDLRDAPLIEPRITFDLTNSGLQ-QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 163 (479)
Q Consensus 85 ~L~~L~l~~~~~l~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 163 (479)
.|+.+.++.|+ +...+++ .|..+..|+.|++++++ +..++ ..+ ...+++-.|+|++ ++
T Consensus 79 ~LRsv~~R~N~---------LKnsGiP~diF~l~dLt~lDLShNq------L~EvP-~~L----E~AKn~iVLNLS~-N~ 137 (1255)
T KOG0444|consen 79 RLRSVIVRDNN---------LKNSGIPTDIFRLKDLTILDLSHNQ------LREVP-TNL----EYAKNSIVLNLSY-NN 137 (1255)
T ss_pred hhHHHhhhccc---------cccCCCCchhcccccceeeecchhh------hhhcc-hhh----hhhcCcEEEEccc-Cc
Confidence 77777776653 3333333 45566667777775421 11111 111 1234555566665 34
Q ss_pred cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCCh
Q 011691 164 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 243 (479)
Q Consensus 164 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 243 (479)
+... ...++-++..|-.|+++++.. ..+..-.+.+..|+.|.|++ +.+....+..+..+++|+.|.+++.....+
T Consensus 138 IetI-Pn~lfinLtDLLfLDLS~NrL---e~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 138 IETI-PNSLFINLTDLLFLDLSNNRL---EMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cccC-CchHHHhhHhHhhhccccchh---hhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 4432 223333445555555554431 11111223334555566655 333334444444455555555554332222
Q ss_pred HHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCH--HHHHHH-----------------hccC
Q 011691 244 EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL-----------------FDGT 304 (479)
Q Consensus 244 ~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~l-----------------~~~~ 304 (479)
.....+..+.+|..++++.|.+.. ....+.. +++|+.|++++ +.++. .+.... ...|
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~--l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avc 288 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPI-VPECLYK--LRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDAVC 288 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCc-chHHHhh--hhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHHHh
Confidence 223333444555555555554431 1122222 45555555555 22331 111222 0001
Q ss_pred CCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHH
Q 011691 305 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 384 (479)
Q Consensus 305 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~ 384 (479)
++++|+.|.+.+ +.++-+++..-...+.+|+.+...+| .+ ....+.++ +|.+|+.|.++.|..|+-..
T Consensus 289 KL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~L-ElVPEglc---------RC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 289 KLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KL-ELVPEGLC---------RCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred hhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-cc-ccCchhhh---------hhHHHHHhcccccceeechh
Confidence 224444444443 33332222211112333444444433 11 11111222 68999999999998777533
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011691 385 FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~ 405 (479)
..++ +|.|+.|++..|+
T Consensus 357 aIHl----L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 357 AIHL----LPDLKVLDLRENP 373 (1255)
T ss_pred hhhh----cCCcceeeccCCc
Confidence 3333 7899999999987
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.55 E-value=2.9e-14 Score=126.44 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=138.5
Q ss_pred hCCCCCEEEEcCCcccCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhh
Q 011691 149 KCASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA 225 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 225 (479)
.+|+|+.|+||. +.++..+ +..+++.+..|++|.+.+|.. ...+-..+... |.+|.. ....+
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~a---l~~l~~----------~kk~~ 154 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRA---LFELAV----------NKKAA 154 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHH---HHHHHH----------HhccC
Confidence 466777777777 4555443 444556677777777776653 32222222221 121110 11233
Q ss_pred CCCCCCEEecCCCCCCChHHHHhh----hcCCCCcEEEccCCCCchHHHHHHHh--hcCCCccEEecCCCCCCCHHHHHH
Q 011691 226 SNTGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISA 299 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~ 299 (479)
.-+.|+.+.... +.+.+.+...+ ...+.|+.+++..|.|...+...+.. ..|++|+.|++.++ .++..+-..
T Consensus 155 ~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHH
Confidence 567788888776 35555544333 36678888888888777666533322 25888888888884 455554444
Q ss_pred Hhcc-CCCCCccEEeccCCCCCCHHHHHH----HHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEc
Q 011691 300 LFDG-TSKLQLQELDLSNLPHLSDNGILT----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 300 l~~~-~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
++.. +.+++|+.|++++| .+...|..+ +....|+|+.|.+.+| .|+..+...++.... ..+.|+.|+|
T Consensus 233 LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnL 305 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNL 305 (382)
T ss_pred HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcC
Confidence 4332 33478999999998 666555544 4456689999999999 888777766665544 4788999999
Q ss_pred cCCCCC--CHHHHHHhhc
Q 011691 375 YNCGGI--TQLAFRWLKK 390 (479)
Q Consensus 375 ~~c~~i--~~~~~~~l~~ 390 (479)
++|. + .+.++..+..
T Consensus 306 ngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 306 NGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred Cccc-ccccchhHHHHHH
Confidence 9998 6 5666766655
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=135.95 Aligned_cols=255 Identities=28% Similarity=0.408 Sum_probs=186.1
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCC-CCCCH--HHHHHHHhcCCCccEEEcCCC
Q 011691 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG-TQLTD--LVFHDISATSLSLTHVCLRWC 213 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~ 213 (479)
.........+...++.|+.|.+..|..+++.....+...+++|+.|+++++ ..... .....+...+++|+.|++++|
T Consensus 174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 344455556666688888888888888887777777788888999988762 22222 223346667788899999888
Q ss_pred CCCCHHHHHHhh-CCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCC--
Q 011691 214 NLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRG-- 288 (479)
Q Consensus 214 ~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~-- 288 (479)
..+++.++..++ .|++|+.|.+.+|..+++.++..+. .+++|++|++++| .+++.++..+.. .+++|+.|.+..
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~-~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK-NCPNLRELKLLSLN 332 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH-hCcchhhhhhhhcC
Confidence 778888888777 4888999988888778888887776 6888999999887 566777877766 588877766554
Q ss_pred -CCCCCHHHHHHHhccCCCC-CccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCC
Q 011691 289 -CKRLTDKCISALFDGTSKL-QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG 366 (479)
Q Consensus 289 -~~~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 366 (479)
|..+++.++....... . .+..+.+.+|+.+++..+.... .......+.+.+|+.++ .++..... .+
T Consensus 333 ~c~~l~~~~l~~~~~~~--~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~ 400 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLT--SDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC--------RS 400 (482)
T ss_pred CCccHHHHHHHHhhccC--chhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc--------cC
Confidence 3456666666554332 2 6777777788887777776554 23223367778888887 66766665 45
Q ss_pred CCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 367 SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 367 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
..++.|+++.|..+++..+..... .+.+++.+++.+|.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCR 438 (482)
T ss_pred CccceEecccCccccccchHHHhh-hhhccccCCccCcc
Confidence 559999999999888888887765 37788999998887
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=135.73 Aligned_cols=246 Identities=27% Similarity=0.360 Sum_probs=185.3
Q ss_pred HHHhCCCCCEEEEcCCcc-cCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCC-CCCCCHHH---
Q 011691 146 MADKCASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW-CNLLTNHA--- 220 (479)
Q Consensus 146 l~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--- 220 (479)
+...+..++.+.+..+.. ........+...++.|+.|.+.++..+.+.++..+...++.|+.|++++ |......+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 156 LSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL 235 (482)
T ss_pred HHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh
Confidence 334455666666665543 3444456666678999999999999998888888899999999999987 33333333
Q ss_pred HHHhhCCCCCCEEecCCCCCCChHHHHhhh-cCCCCcEEEccCCC-CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011691 221 IKSLASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
......+++|+.|+++.|..+++.++..++ .+++|+.|.+.+|. +++.++..+.. .++.|++|++++|..+++.++.
T Consensus 236 ~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHH
Confidence 222337899999999998779999999888 58999999988886 89999999999 8999999999999999999888
Q ss_pred HHhccCCCCCccEEeccC---CCCCCHHHHHHHHhcCC-CCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEc
Q 011691 299 ALFDGTSKLQLQELDLSN---LPHLSDNGILTLATCRV-PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 374 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 374 (479)
.+...| ++|+.|.+.. |..++...+..+..... .+..+.+.+|+.+++..+..... ......+.+
T Consensus 315 ~~~~~c--~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~~l 383 (482)
T KOG1947|consen 315 ALLKNC--PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI---------SDLGLELSL 383 (482)
T ss_pred HHHHhC--cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc---------cCcchHHHh
Confidence 887766 7776665544 44577777766655443 67788888888888777766553 111225777
Q ss_pred cCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 375 YNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 375 ~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+|+.++ ..+..... .+.+++.|+++.|.
T Consensus 384 ~gc~~l~-~~l~~~~~-~~~~l~~L~l~~~~ 412 (482)
T KOG1947|consen 384 RGCPNLT-ESLELRLC-RSDSLRVLNLSDCR 412 (482)
T ss_pred cCCcccc-hHHHHHhc-cCCccceEecccCc
Confidence 8888887 66655554 45569999999987
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.46 E-value=2.3e-15 Score=142.70 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=122.1
Q ss_pred HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCC
Q 011691 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
.++.+|++|.|++ +.+....++++ ..+.+|..|.+++.. -+...+......+.+|..++++. +.++.. ..++-.+
T Consensus 170 RRL~~LqtL~Ls~-NPL~hfQLrQL-PsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~l 244 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSN-NPLNHFQLRQL-PSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYKL 244 (1255)
T ss_pred HHHhhhhhhhcCC-ChhhHHHHhcC-ccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhhh
Confidence 3456677777777 45555445443 234556666665432 22222222333455777777776 455432 2345577
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC----HHHHHHHhcc
Q 011691 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT----DKCISALFDG 303 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~----~~~~~~l~~~ 303 (479)
++|+.|++|++ .++.... ......+|++|+++.|.++. ....+.+ +++|+.|.+.+ +.++ +.|+..+
T Consensus 245 ~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcK--L~kL~kLy~n~-NkL~FeGiPSGIGKL--- 315 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCK--LTKLTKLYANN-NKLTFEGIPSGIGKL--- 315 (1255)
T ss_pred hhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhh--hHHHHHHHhcc-CcccccCCccchhhh---
Confidence 88888888873 4443221 12234578888888887763 2333444 77788888766 3454 3444444
Q ss_pred CCCCCccEEeccCCCCCC--HHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCC
Q 011691 304 TSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 381 (479)
Q Consensus 304 ~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~ 381 (479)
.+|+.+..++ +.+. ++++. .|+.|+.|.++.|.-|+- +.+++ -++.|+.|++..|+++-
T Consensus 316 ---~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~NrLiTL------PeaIH-----lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 ---IQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDHNRLITL------PEAIH-----LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hhhHHHHhhc-cccccCchhhh----hhHHHHHhcccccceeec------hhhhh-----hcCCcceeeccCCcCcc
Confidence 6788888887 4543 55555 699999999999855542 22222 47889999999998754
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.40 E-value=7.7e-13 Score=144.26 Aligned_cols=247 Identities=19% Similarity=0.232 Sum_probs=137.3
Q ss_pred hcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHH
Q 011691 114 NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDL 193 (479)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 193 (479)
..+++|+.|+++.+. ....++. + ..+++|+.|++++|..+... ..-+..+++|+.|++++|..+...
T Consensus 631 ~~l~~Lk~L~Ls~~~-----~l~~ip~-----l-s~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 631 HSLTGLRNIDLRGSK-----NLKEIPD-----L-SMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccCCCCCEEECCCCC-----CcCcCCc-----c-ccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCcc
Confidence 456778888886431 1122221 1 34678888888887655432 222356788888888887765433
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHH--------------------------
Q 011691 194 VFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALR-------------------------- 247 (479)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-------------------------- 247 (479)
+.. ..+++|+.|++++|..+...+. ..++|+.|+++++ .+...+..
T Consensus 698 p~~---i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 698 PTG---INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCc---CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCC-ccccccccccccccccccccccchhhcccccccc
Confidence 221 1466888888888765543221 2356777777664 22211100
Q ss_pred ---hhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHH
Q 011691 248 ---AISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG 324 (479)
Q Consensus 248 ---~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~ 324 (479)
.....++|+.|++++|.........+. .+++|+.|++++|..+.. +.....+++|++|++++|..+..-
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~- 841 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTF- 841 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccc-
Confidence 000124566666666532222222222 366777777777665442 111112367777777777554321
Q ss_pred HHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011691 325 ILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 325 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
....++|+.|+++++ .++.. +.-.. .+++|+.|++++|++++..... +. .+++|+.+++++|
T Consensus 842 ----p~~~~nL~~L~Ls~n-~i~~i--P~si~--------~l~~L~~L~L~~C~~L~~l~~~-~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 ----PDISTNISDLNLSRT-GIEEV--PWWIE--------KFSNLSFLDMNGCNNLQRVSLN-IS--KLKHLETVDFSDC 903 (1153)
T ss_pred ----cccccccCEeECCCC-CCccC--hHHHh--------cCCCCCEEECCCCCCcCccCcc-cc--cccCCCeeecCCC
Confidence 112356777777776 44431 11112 5788999999998877753321 21 4788888899888
Q ss_pred CCH
Q 011691 405 VNR 407 (479)
Q Consensus 405 ~~~ 407 (479)
...
T Consensus 904 ~~L 906 (1153)
T PLN03210 904 GAL 906 (1153)
T ss_pred ccc
Confidence 743
No 19
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.19 E-value=1.3e-10 Score=99.98 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=82.2
Q ss_pred hCCCCCCEEecCCCCCCChHHH----HhhhcCCCCcEEEccCCCCchHHHHHHHh-----------hcCCCccEEecCCC
Q 011691 225 ASNTGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGVSYLRL-----------TVITSLVKLSLRGC 289 (479)
Q Consensus 225 ~~~~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~l~~l~~-----------~~~~~L~~L~l~~~ 289 (479)
..||.|+.+++|++ .++.... ..++..+.|++|.+++|.+...+-..+++ ..-|.|++.....+
T Consensus 89 lkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 35666666666652 3333222 23345556666666666444332222221 12355666555543
Q ss_pred CCCC--HHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHH----HhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCC
Q 011691 290 KRLT--DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL----ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDR 363 (479)
Q Consensus 290 ~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~ 363 (479)
..-. ..-.....+.. .+|+++.+.. +.|.++++..+ ...+.+|+.|++..| .++..+-..++.++.
T Consensus 168 Rlengs~~~~a~~l~sh--~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~---- 239 (388)
T COG5238 168 RLENGSKELSAALLESH--ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC---- 239 (388)
T ss_pred hhccCcHHHHHHHHHhh--cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc----
Confidence 2111 11111111111 4566666665 56666655433 223566666666666 556666666665555
Q ss_pred CCCCCccEEEccCCCCCCHHHHHHhh----ccCCCCccEEEecCC
Q 011691 364 WYGSSIRLLDLYNCGGITQLAFRWLK----KPYFPRLRWLGVTGS 404 (479)
Q Consensus 364 ~~~~~L~~L~l~~c~~i~~~~~~~l~----~~~~~~L~~L~l~~~ 404 (479)
.++.|+.|.+..|- ++..|...+. .-..|+|..|....+
T Consensus 240 -~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 240 -EWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred -ccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchh
Confidence 34556666666665 4443333222 223566666665544
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=2.9e-12 Score=127.31 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=58.1
Q ss_pred CCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC--CCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHh
Q 011691 253 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 330 (479)
+.|+.|.+.+|.+++..++.+.. +++|+.|+++++ +.+.+..+..+ ..|++|+|++ +.++... ..++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp-~tva- 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSG-NKLTTLP-DTVA- 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcc--ccceeeeeecccccccCCHHHHhch------HHhHHHhccc-chhhhhh-HHHH-
Confidence 34555555555555555554443 555555555553 22333333333 4555555555 3444222 1111
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.|+.|++|...+| .+.. ++.++ .++.|+.+|++.|. ++...+..... .|+|++|+++||.
T Consensus 428 ~~~~L~tL~ahsN-~l~~--fPe~~---------~l~qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLS--FPELA---------QLPQLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCC-ceee--chhhh---------hcCcceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 3455555555544 2221 12333 24555555555444 44433333322 2555555555554
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=4.7e-12 Score=125.83 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=55.8
Q ss_pred CccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccE
Q 011691 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVK 283 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~ 283 (479)
.|+.|.+.+ +.+++..+..+...++|+.|++++ +.+....-..+.++..|++|++++|.++... ..++. ++.|++
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~--~~~L~t 434 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVAN--LGRLHT 434 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHh--hhhhHH
Confidence 444455554 445555444444555555555554 2344333344445555555555555444322 22232 444555
Q ss_pred EecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCC
Q 011691 284 LSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 284 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
|...++.-..-..+..+ +.|+.+|++. ++++...+..... .|+|++|+++||.
T Consensus 435 L~ahsN~l~~fPe~~~l------~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 435 LRAHSNQLLSFPELAQL------PQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HhhcCCceeechhhhhc------CcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence 54443221111122222 4555555543 4444333332221 2455555555553
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-11 Score=112.27 Aligned_cols=208 Identities=17% Similarity=0.167 Sum_probs=131.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHH-HhhhcCCCccEEeccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL-QQINQHGKLKHLSLIRSQEFLITYFR 136 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~l~~~~~L~~L~l~~~~~~~~~~~~ 136 (479)
+.+|+...|.++.+.+......++.||+++.|+|++|-. .....+ ..+..+|+|+.|+++.+ .+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~--------~nw~~v~~i~eqLp~Le~LNls~N------rl~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF--------HNWFPVLKIAEQLPSLENLNLSSN------RLS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhH--------HhHHHHHHHHHhcccchhcccccc------ccc
Confidence 778888888888777766656777899999999988731 111122 23347888888888752 111
Q ss_pred ccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCC
Q 011691 137 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 216 (479)
Q Consensus 137 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (479)
........ ..+++|+.|.|+.| .++...+..+...+|+|+.|.++.+..+..... -......|++|+|++.+.+
T Consensus 186 ~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 186 NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccc
Confidence 11111111 24677888888887 677777778888888888888887743211111 1123347888888886555
Q ss_pred CHHHHHHhhCCCCCCEEecCCCCCCChHHHHhh------hcCCCCcEEEccCCCCchH-HHHHHHhhcCCCccEEecCC
Q 011691 217 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAI------SSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 288 (479)
Q Consensus 217 ~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l------~~l~~L~~L~l~~~~l~~~-~l~~l~~~~~~~L~~L~l~~ 288 (479)
+......++.+|.|+.|.++.| .+.+...... ..+++|+.|++..|.+.+. .+..+.. +++|+.|.+..
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 5544555667888888888775 4444332222 3578888888888877442 2333333 66677776654
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5e-11 Score=109.11 Aligned_cols=211 Identities=18% Similarity=0.155 Sum_probs=108.9
Q ss_pred cCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccC-HHHHHHHHHhCCCCceEEecCCCCCCHH
Q 011691 115 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDL 193 (479)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 193 (479)
++.+|+.+.+.+ ..+...+.....+.|++++.|+|+.. -+. -..+..+++.+|+|+.|+++.+......
T Consensus 119 n~kkL~~IsLdn---------~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDN---------YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hHHhhhheeecC---------ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 566777777754 34444444345567888888888772 222 2335667777888888887765531110
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCCHHHH-HHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHH-HH
Q 011691 194 VFHDISATSLSLTHVCLRWCNLLTNHAI-KSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVG-VS 271 (479)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-l~ 271 (479)
+ .......++|+.|.++.|+ ++...+ ..+..+|+|+.|.+..++.+.. .......+..|++|+|++|.+-+.. +.
T Consensus 189 ~-s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 189 S-SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred c-ccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCccccccccc
Confidence 0 0011145577777777774 333333 3344677777777776532111 1111224456777777777544333 22
Q ss_pred HHHhhcCCCccEEecCCCCCCCHHH---HHHHhccCCCCCccEEeccCCCCCC-HHHHHHHHhcCCCCCEEecCCC
Q 011691 272 YLRLTVITSLVKLSLRGCKRLTDKC---ISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 272 ~l~~~~~~~L~~L~l~~~~~l~~~~---~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
..+ .+|.|..|+++.|. +++.. .........+++|++|++.. +.+. ...+..+. .+++|+.|.+..+
T Consensus 266 ~~~--~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~-~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 266 KVG--TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLR-TLENLKHLRITLN 336 (505)
T ss_pred ccc--cccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc-Cccccccccchhh-ccchhhhhhcccc
Confidence 233 36777777776642 22111 11111112236666666666 3442 22222222 3556666665544
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.95 E-value=3.9e-08 Score=84.93 Aligned_cols=150 Identities=22% Similarity=0.197 Sum_probs=104.4
Q ss_pred HhhhcCCCCcEEEccCCCCchHHH---HHHHhhcCCCccEEecCCCCCCCHHH-------HHHHhc---cCCCCCccEEe
Q 011691 247 RAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGCKRLTDKC-------ISALFD---GTSKLQLQELD 313 (479)
Q Consensus 247 ~~l~~l~~L~~L~l~~~~l~~~~l---~~l~~~~~~~L~~L~l~~~~~l~~~~-------~~~l~~---~~~~~~L~~L~ 313 (479)
+.+..||+|+..+++.|.+..... ..+.. ....|.+|.+++|. +.+.+ +..++. ....|.|+++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 445689999999999997665443 33333 57889999999865 44222 222221 12338999999
Q ss_pred ccCCCCCC---HHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc
Q 011691 314 LSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 390 (479)
Q Consensus 314 l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 390 (479)
... +.+. ..-.....+.-.+|+.+.+..| .|.+.|+..++..... .+++|+.|++..|. ++..+-..++.
T Consensus 164 cgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~gS~~La~ 236 (388)
T COG5238 164 CGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLEGSRYLAD 236 (388)
T ss_pred ecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhhhHHHHHH
Confidence 887 4544 2223334444468999999999 8998887766542221 68999999999998 88777666654
Q ss_pred c--CCCCccEEEecCCC
Q 011691 391 P--YFPRLRWLGVTGSV 405 (479)
Q Consensus 391 ~--~~~~L~~L~l~~~~ 405 (479)
+ .++.|+.|.+.+|.
T Consensus 237 al~~W~~lrEL~lnDCl 253 (388)
T COG5238 237 ALCEWNLLRELRLNDCL 253 (388)
T ss_pred Hhcccchhhhccccchh
Confidence 2 36789999999996
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=2.7e-09 Score=108.97 Aligned_cols=245 Identities=19% Similarity=0.169 Sum_probs=144.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 137 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 137 (479)
.++|+.|++..|.++. + ....++|++|++++|. ++. ++. ..++|++|++.. +.
T Consensus 221 ~~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N~---------Lts--LP~--lp~sL~~L~Ls~---------N~ 273 (788)
T PRK15387 221 PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFS---------NP 273 (788)
T ss_pred hcCCCEEEccCCcCCC--C---CCCCCCCcEEEecCCc---------cCc--ccC--cccccceeeccC---------Cc
Confidence 3578888888777664 2 1246789999998874 221 111 135788888853 22
Q ss_pred cchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCC
Q 011691 138 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 217 (479)
Q Consensus 138 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (479)
+. .+....++|+.|++++ +.+... . ...++|+.|++++|.. ... .....+|+.|.+++| .++
T Consensus 274 L~-----~Lp~lp~~L~~L~Ls~-N~Lt~L--P---~~p~~L~~LdLS~N~L-~~L-----p~lp~~L~~L~Ls~N-~L~ 335 (788)
T PRK15387 274 LT-----HLPALPSGLCKLWIFG-NQLTSL--P---VLPPGLQELSVSDNQL-ASL-----PALPSELCKLWAYNN-QLT 335 (788)
T ss_pred hh-----hhhhchhhcCEEECcC-Cccccc--c---ccccccceeECCCCcc-ccC-----CCCcccccccccccC-ccc
Confidence 21 1112345688888888 455532 1 2346888998887643 221 112346788888774 444
Q ss_pred HHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011691 218 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 297 (479)
Q Consensus 218 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~ 297 (479)
..+ . ..++|+.|+++++ .+...+ . ..++|+.|++++|.++. ++ . ..++|+.|+++++. ++. +
T Consensus 336 ~LP--~--lp~~Lq~LdLS~N-~Ls~LP--~--lp~~L~~L~Ls~N~L~~--LP---~-l~~~L~~LdLs~N~-Lt~--L 397 (788)
T PRK15387 336 SLP--T--LPSGLQELSVSDN-QLASLP--T--LPSELYKLWAYNNRLTS--LP---A-LPSGLKELIVSGNR-LTS--L 397 (788)
T ss_pred ccc--c--cccccceEecCCC-ccCCCC--C--CCcccceehhhcccccc--Cc---c-cccccceEEecCCc-ccC--C
Confidence 221 1 1247889999874 554321 1 13578888888887763 22 1 24578888888743 431 1
Q ss_pred HHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCC
Q 011691 298 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 377 (479)
Q Consensus 298 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 377 (479)
... .++|+.|+++++ .++... ....+|+.|++++| .++.. ...+. .+++|+.|++++|
T Consensus 398 P~l-----~s~L~~LdLS~N-~LssIP-----~l~~~L~~L~Ls~N-qLt~L-P~sl~---------~L~~L~~LdLs~N 455 (788)
T PRK15387 398 PVL-----PSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTRL-PESLI---------HLSSETTVNLEGN 455 (788)
T ss_pred CCc-----ccCCCEEEccCC-cCCCCC-----cchhhhhhhhhccC-ccccc-ChHHh---------hccCCCeEECCCC
Confidence 111 167888999884 555211 11346788888887 56531 11222 4778899999888
Q ss_pred CCCCHHHHHHh
Q 011691 378 GGITQLAFRWL 388 (479)
Q Consensus 378 ~~i~~~~~~~l 388 (479)
+ ++...+..+
T Consensus 456 ~-Ls~~~~~~L 465 (788)
T PRK15387 456 P-LSERTLQAL 465 (788)
T ss_pred C-CCchHHHHH
Confidence 8 776655544
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=6.1e-09 Score=106.48 Aligned_cols=256 Identities=19% Similarity=0.158 Sum_probs=160.1
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEeccccccccccccccc
Q 011691 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRV 138 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 138 (479)
..-..|+++.+.++. ....+ .++|+.|.+.+|. ++. ++. ..++|++|+++++ .+..+
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l---~~~L~~L~L~~N~---------Lt~--LP~--lp~~Lk~LdLs~N------~LtsL 257 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCL---PAHITTLVIPDNN---------LTS--LPA--LPPELRTLEVSGN------QLTSL 257 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcch---hcCCCEEEccCCc---------CCC--CCC--CCCCCcEEEecCC------ccCcc
Confidence 346678888766653 22222 2589999999874 222 221 2578999999752 22222
Q ss_pred chHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCH
Q 011691 139 NDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN 218 (479)
Q Consensus 139 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (479)
+ ...++|+.|+++++ .+... . ....+|+.|++++|. +... ....++|+.|+++++ .+..
T Consensus 258 P--------~lp~sL~~L~Ls~N-~L~~L--p---~lp~~L~~L~Ls~N~-Lt~L-----P~~p~~L~~LdLS~N-~L~~ 316 (788)
T PRK15387 258 P--------VLPPGLLELSIFSN-PLTHL--P---ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDN-QLAS 316 (788)
T ss_pred c--------CcccccceeeccCC-chhhh--h---hchhhcCEEECcCCc-cccc-----cccccccceeECCCC-cccc
Confidence 2 12468999999884 55432 2 234678899998875 3321 123468999999984 5553
Q ss_pred HHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHH
Q 011691 219 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCIS 298 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 298 (479)
.+ . ...+|+.|.+++| .++..+ . ..++|+.|++++|.++.. + . ..++|+.|.++++ .++. +.
T Consensus 317 Lp--~--lp~~L~~L~Ls~N-~L~~LP--~--lp~~Lq~LdLS~N~Ls~L--P---~-lp~~L~~L~Ls~N-~L~~--LP 378 (788)
T PRK15387 317 LP--A--LPSELCKLWAYNN-QLTSLP--T--LPSGLQELSVSDNQLASL--P---T-LPSELYKLWAYNN-RLTS--LP 378 (788)
T ss_pred CC--C--CcccccccccccC-cccccc--c--cccccceEecCCCccCCC--C---C-CCcccceehhhcc-cccc--Cc
Confidence 21 1 2346888888875 454311 1 124799999999988742 1 1 2457888888774 3442 11
Q ss_pred HHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCC
Q 011691 299 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 299 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
.. . .+|+.|++++ +.++... ...++|+.|++++| .++. +.. ...+|+.|++++|.
T Consensus 379 ~l---~--~~L~~LdLs~-N~Lt~LP-----~l~s~L~~LdLS~N-~Lss-----IP~--------l~~~L~~L~Ls~Nq 433 (788)
T PRK15387 379 AL---P--SGLKELIVSG-NRLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ 433 (788)
T ss_pred cc---c--cccceEEecC-CcccCCC-----CcccCCCEEEccCC-cCCC-----CCc--------chhhhhhhhhccCc
Confidence 11 1 5799999998 4665211 12468999999999 5552 222 23468889999987
Q ss_pred CCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 379 GITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 379 ~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
++..+ ..+. .+++|+.|++++|+
T Consensus 434 -Lt~LP-~sl~--~L~~L~~LdLs~N~ 456 (788)
T PRK15387 434 -LTRLP-ESLI--HLSSETTVNLEGNP 456 (788)
T ss_pred -ccccC-hHHh--hccCCCeEECCCCC
Confidence 66432 2333 38899999999998
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.77 E-value=3.9e-08 Score=100.17 Aligned_cols=215 Identities=19% Similarity=0.180 Sum_probs=148.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccc--cchH-HHHhh-h--cCCCccEEecccccccc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQI-N--QHGKLKHLSLIRSQEFL 131 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~-~l~~l-~--~~~~L~~L~l~~~~~~~ 131 (479)
.-++...++.+.......+..+.+ ..|++|.+.+......+.... +... .+..+ . .-.+|++|++++
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G----- 131 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG----- 131 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc-----
Confidence 346777777777777777766653 338999888764433332221 1110 11111 1 446899999954
Q ss_pred cccccccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcC
Q 011691 132 ITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLR 211 (479)
Q Consensus 132 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (479)
...+...+...+...+|+|++|.+++ ..+....+..+...+|+|..|++++...-.-.+ ...+++|+.|.+.
T Consensus 132 ---~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G----IS~LknLq~L~mr 203 (699)
T KOG3665|consen 132 ---SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNLSG----ISRLKNLQVLSMR 203 (699)
T ss_pred ---cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCcHH----HhccccHHHHhcc
Confidence 45667777888888999999999999 455555588888999999999999866332222 3366789999888
Q ss_pred CCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHH-----HHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEec
Q 011691 212 WCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-----LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL 286 (479)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-----~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l 286 (479)
+-...+...+..+..+++|+.|++|......... ++.-..+|+|+.|+.+++.++...+..+.. ..|+|+.+..
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~ 282 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAA 282 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhh
Confidence 8554444667778899999999999754333321 111226899999999999999888888877 6777776665
Q ss_pred CC
Q 011691 287 RG 288 (479)
Q Consensus 287 ~~ 288 (479)
-+
T Consensus 283 ~~ 284 (699)
T KOG3665|consen 283 LD 284 (699)
T ss_pred hh
Confidence 43
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.74 E-value=8.5e-08 Score=97.70 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCc
Q 011691 177 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 256 (479)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 256 (479)
.+|++|+++|...+.......+...+|+|+.|.+++-....+.......++|+|..|+||++ ++++. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence 35666666665555545555566666666666666632222322233336666666666664 34332 4555666666
Q ss_pred EEEccCCCCch-HHHHHHHhhcCCCccEEecCCCCCCCHH-HHH-HHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 011691 257 ILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDK-CIS-ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 257 ~L~l~~~~l~~-~~l~~l~~~~~~~L~~L~l~~~~~l~~~-~~~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
.|.+.+-.+.. ..+..+.. +.+|+.|+++.-...... .+. .+.-+..+|.|+.||.++ ..++...+..+...-|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred HHhccCCCCCchhhHHHHhc--ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 66666554443 33444444 666666666664333322 111 111122246677777666 4666666655555555
Q ss_pred CCCEEec
Q 011691 334 PISELRV 340 (479)
Q Consensus 334 ~L~~L~l 340 (479)
+|+.+.+
T Consensus 276 ~L~~i~~ 282 (699)
T KOG3665|consen 276 NLQQIAA 282 (699)
T ss_pred cHhhhhh
Confidence 5555543
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.69 E-value=1.5e-09 Score=98.28 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=82.5
Q ss_pred ccchhhHHHHHHhhhccceeecccccchhhhhccCCCCCCCCCCCccCCCCCCCCcEEEeecCccChhHHHHHHHcCCCc
Q 011691 7 FLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSL 86 (479)
Q Consensus 7 ~~~~~~~~~~~~~p~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L 86 (479)
.....+..++..+|++...+.++......++.-. ...+++||+|+|+.|.|+.....++. .+++|
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~a--------------F~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l 117 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGA--------------FKTLHRLRRLDLSKNNISFIAPDAFK-GLASL 117 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhh--------------ccchhhhceecccccchhhcChHhhh-hhHhh
Confidence 3455677788888888887777632221111110 24478999999999988887766664 78899
Q ss_pred cEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEcCCcccCH
Q 011691 87 THLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTD 166 (479)
Q Consensus 87 ~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 166 (479)
.+|.+.++. +|++..-..++.+..|+.|.+.. ..+.-+....+ ..+++|..|.+.. +.+..
T Consensus 118 ~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNa------n~i~Cir~~al----~dL~~l~lLslyD-n~~q~ 178 (498)
T KOG4237|consen 118 LSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNA------NHINCIRQDAL----RDLPSLSLLSLYD-NKIQS 178 (498)
T ss_pred hHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcCh------hhhcchhHHHH----HHhhhcchhcccc-hhhhh
Confidence 998888854 34443333455566666666643 12223333333 3355666666655 22221
Q ss_pred HHHHHHHHhCCCCceEEecCCC
Q 011691 167 TGFKTILHSCSNLYKLRVSHGT 188 (479)
Q Consensus 167 ~~~~~l~~~~~~L~~L~l~~~~ 188 (479)
. ...-++.+..++.+.+..+.
T Consensus 179 i-~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 179 I-CKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred h-ccccccchhccchHhhhcCc
Confidence 1 11112334455555554444
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.5e-08 Score=88.67 Aligned_cols=109 Identities=17% Similarity=-0.004 Sum_probs=66.5
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHH
Q 011691 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
+.+++|....|.......+..+.+.+|++..+.+..|| +.+...+.-.. .+|.+-.|+++.++--+..++.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se--------~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE--------PFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC--------CCCcchhhhhcccccccHHHHH
Confidence 56677777776555555566667777888888887774 33333333333 4666777777777644446677
Q ss_pred HhhccCCCCccEEEecCCCCHHHHHH------HHhcCCCceeeccC
Q 011691 387 WLKKPYFPRLRWLGVTGSVNRDILDA------LARSRPFLNVACRG 426 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~p~l~~~~~~ 426 (479)
.+.. +|.|..|.+.+++..+.++- +..+.|++++...+
T Consensus 244 ~Ln~--f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 244 ALNG--FPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHcC--CchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 7765 88888888888773333222 22345555555444
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=4.2e-07 Score=93.66 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=20.5
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
.++|+.|+|++|.+.. ++.- .+++|++|++++|.
T Consensus 198 p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~ 231 (754)
T PRK15370 198 PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ 231 (754)
T ss_pred ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc
Confidence 3467777777766653 2211 23577777777763
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.51 E-value=4.8e-07 Score=93.26 Aligned_cols=205 Identities=14% Similarity=0.133 Sum_probs=100.8
Q ss_pred CCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCC
Q 011691 151 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 230 (479)
Q Consensus 151 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 230 (479)
++|+.|+++++ .+... ...+ .++|+.|++++|.. ...+.. + ..+|+.|++++ +.+...+- . -.++|
T Consensus 220 ~nL~~L~Ls~N-~LtsL-P~~l---~~~L~~L~Ls~N~L-~~LP~~-l---~s~L~~L~Ls~-N~L~~LP~-~--l~~sL 285 (754)
T PRK15370 220 GNIKTLYANSN-QLTSI-PATL---PDTIQEMELSINRI-TELPER-L---PSALQSLDLFH-NKISCLPE-N--LPEEL 285 (754)
T ss_pred cCCCEEECCCC-ccccC-Chhh---hccccEEECcCCcc-CcCChh-H---hCCCCEEECcC-CccCcccc-c--cCCCC
Confidence 46677777663 44422 1111 23566777766542 211111 1 23677777765 34442211 1 12467
Q ss_pred CEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCcc
Q 011691 231 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ 310 (479)
Q Consensus 231 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 310 (479)
+.|++++| .++.... .+ .++|+.|++++|.++..... ..++|+.|.+++|. ++... ..+ .++|+
T Consensus 286 ~~L~Ls~N-~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~~l-----~~sL~ 349 (754)
T PRK15370 286 RYLSVYDN-SIRTLPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKTLEAGENA-LTSLP-ASL-----PPELQ 349 (754)
T ss_pred cEEECCCC-ccccCcc-cc--hhhHHHHHhcCCccccCCcc-----ccccceeccccCCc-cccCC-hhh-----cCccc
Confidence 77777764 3432110 11 13567777777766532110 23567777777653 32110 011 15777
Q ss_pred EEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH--HHHHHh
Q 011691 311 ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ--LAFRWL 388 (479)
Q Consensus 311 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~--~~~~~l 388 (479)
.|+++++ .++.... . ..++|+.|++++| .++... ..+ .+.|+.|++++|. ++. ..+..+
T Consensus 350 ~L~Ls~N-~L~~LP~-~---lp~~L~~LdLs~N-~Lt~LP-~~l-----------~~sL~~LdLs~N~-L~~LP~sl~~~ 410 (754)
T PRK15370 350 VLDVSKN-QITVLPE-T---LPPTITTLDVSRN-ALTNLP-ENL-----------PAALQIMQASRNN-LVRLPESLPHF 410 (754)
T ss_pred EEECCCC-CCCcCCh-h---hcCCcCEEECCCC-cCCCCC-HhH-----------HHHHHHHhhccCC-cccCchhHHHH
Confidence 7777774 4442111 1 1356777777777 444211 111 1247777777776 442 122233
Q ss_pred hccCCCCccEEEecCCC
Q 011691 389 KKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 389 ~~~~~~~L~~L~l~~~~ 405 (479)
.. .+|++..|++.+|+
T Consensus 411 ~~-~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 RG-EGPQPTRIIVEYNP 426 (754)
T ss_pred hh-cCCCccEEEeeCCC
Confidence 22 35777777777776
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.51 E-value=2.3e-09 Score=97.40 Aligned_cols=84 Identities=24% Similarity=0.261 Sum_probs=49.8
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCC
Q 011691 174 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 253 (479)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 253 (479)
.+|..|++|++..+. +.. -.....+.+++|..|++.. +++...+. .+.-+.+|.+|+++++ .++.- ...++++
T Consensus 225 ~gcs~L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRd-Nklke~Pd-e~clLrsL~rLDlSNN-~is~L-p~sLgnl- 297 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRD-NKLKEVPD-EICLLRSLERLDLSNN-DISSL-PYSLGNL- 297 (565)
T ss_pred CccHHHHHHHhcccH-HHh-hHHHHhcccccceeeeccc-cccccCch-HHHHhhhhhhhcccCC-ccccC-Ccccccc-
Confidence 345566666664432 211 1223555778888888887 56665543 3446778888998873 44332 2234555
Q ss_pred CCcEEEccCCC
Q 011691 254 QLKILLLDGSD 264 (479)
Q Consensus 254 ~L~~L~l~~~~ 264 (479)
+|+.|.+.+|.
T Consensus 298 hL~~L~leGNP 308 (565)
T KOG0472|consen 298 HLKFLALEGNP 308 (565)
T ss_pred eeeehhhcCCc
Confidence 67777777763
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=1.6e-08 Score=91.83 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHH
Q 011691 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 386 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~ 386 (479)
++|+.|++++ +.++...-.++ .....++.|.+..| ++.. +....++ .+..|+.|++.+|+ |+-....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aF-e~~a~l~eL~L~~N-~l~~-----v~~~~f~----~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAF-EGAAELQELYLTRN-KLEF-----VSSGMFQ----GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhh-cchhhhhhhhcCcc-hHHH-----HHHHhhh----ccccceeeeecCCe-eEEEecc
Confidence 7777777777 56653322222 24566777777776 3322 2222222 57778888888887 6654444
Q ss_pred HhhccCCCCccEEEecCCC
Q 011691 387 WLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 387 ~l~~~~~~~L~~L~l~~~~ 405 (479)
.+.. ..+|..|.+-.|+
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 4433 5677777776554
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=2.6e-08 Score=83.18 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=37.0
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 011691 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
++++|++.++.|+. +..+.. .+.+|+.|+++++.--.-+++..+ ++|++|++++ +.++..+- .+...+|
T Consensus 20 ~~~~L~L~~n~I~~--Ie~L~~-~l~~L~~L~Ls~N~I~~l~~l~~L------~~L~~L~L~~-N~I~~i~~-~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IENLGA-TLDKLEVLDLSNNQITKLEGLPGL------PRLKTLDLSN-NRISSISE-GLDKNLP 88 (175)
T ss_dssp ------------------S--T-T-TT--EEE-TTS--S--TT----------TT--EEE--S-S---S-CH-HHHHH-T
T ss_pred cccccccccccccc--ccchhh-hhcCCCEEECCCCCCccccCccCh------hhhhhcccCC-CCCCcccc-chHHhCC
Confidence 44555555554432 112221 244555555555321112233333 6677777776 45553321 1223467
Q ss_pred CCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCCCCCH-HHHHHhhccCCCCccEEEecCC
Q 011691 334 PISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
+|+.|.+++| .|.+.. +..+. .+++|+.|++.+|+ ++. ...+.+.-..+|+|+.||-...
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 7777777776 443321 22222 46777777777777 442 2222222224777777776544
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=4.6e-07 Score=79.50 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=40.1
Q ss_pred HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHh-hCCCCCCEEecCCCCCCChHHHHh-
Q 011691 171 TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGIKVLDLRDCKNLGDEALRA- 248 (479)
Q Consensus 171 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~- 248 (479)
.+...+..++.|++.++.......+..+...+|.|+.|+++. +.+.. .+..+ ....+|+.|.+.+ ..+.......
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~ 141 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLPLKNLRVLVLNG-TGLSWTQSTSS 141 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCC-ccccCcccccceEEEEEcC-CCCChhhhhhh
Confidence 333444455555554444333344444555555555555544 22221 11222 1444555665555 2333332222
Q ss_pred hhcCCCCcEEEccCC
Q 011691 249 ISSLPQLKILLLDGS 263 (479)
Q Consensus 249 l~~l~~L~~L~l~~~ 263 (479)
+..+|.+++|+++.|
T Consensus 142 l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN 156 (418)
T ss_pred hhcchhhhhhhhccc
Confidence 234555555555555
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.37 E-value=8.8e-08 Score=87.32 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=53.5
Q ss_pred cCCCccEEecCCCCCCCH--HHHHHHhccCCCCCccEEeccCCCCCC--HHHHHHHHhcCCCCCEEecCCCCCCCHHHHH
Q 011691 277 VITSLVKLSLRGCKRLTD--KCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVI 352 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 352 (479)
.+++|..|++++. .+.+ ..+..+ ..|+.|+++. +.+. +..+.. ...|+.+-.+++ .+......
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e~~~l------v~Lq~LnlS~-NrFr~lP~~~y~----lq~lEtllas~n-qi~~vd~~ 499 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEEMGSL------VRLQTLNLSF-NRFRMLPECLYE----LQTLETLLASNN-QIGSVDPS 499 (565)
T ss_pred hhhcceeeecccc-hhhhcchhhhhh------hhhheecccc-cccccchHHHhh----HHHHHHHHhccc-cccccChH
Confidence 4777888888763 2322 222223 4588888887 3443 333331 222444444444 43322222
Q ss_pred HHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011691 353 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+. .+.+|.+|++.+|. +.. +..... .|.+|++|.+.||+
T Consensus 500 ~l~---------nm~nL~tLDL~nNd-lq~--IPp~Lg-nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLK---------NMRNLTTLDLQNND-LQQ--IPPILG-NMTNLRHLELDGNP 539 (565)
T ss_pred Hhh---------hhhhcceeccCCCc-hhh--CChhhc-cccceeEEEecCCc
Confidence 222 24557888887776 222 111222 57788888888876
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=5.8e-07 Score=75.19 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=13.4
Q ss_pred CCCCCCEEecCCCCCCCh-HHHHhhhcCCCCcEEEccCCCCc
Q 011691 226 SNTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.+|+|+.|.++++ .+.+ ..+..++.+++|+.|++.+|.++
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 3455555555542 3322 12334445555666666555444
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=7e-07 Score=78.50 Aligned_cols=145 Identities=23% Similarity=0.209 Sum_probs=95.1
Q ss_pred cCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHh
Q 011691 251 SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 251 ~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 330 (479)
....|+++++++|.|+... .-.+ -.|.++.|+++.+.-..-..+..+ ++|+.|++++ +.++.. ...-.
T Consensus 282 TWq~LtelDLS~N~I~~iD--ESvK-L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~~--~Gwh~ 349 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID--ESVK-LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAEC--VGWHL 349 (490)
T ss_pred hHhhhhhccccccchhhhh--hhhh-hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHhh--hhhHh
Confidence 3467899999999765422 1122 478999999998543334445555 8999999998 455422 11122
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH-HHHHHhhccCCCCccEEEecCCC----
Q 011691 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV---- 405 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~L~~L~l~~~~---- 405 (479)
.+-+++.|.+.+| .+.+ +..+. .+-+|..|++++|+ |.. ..+..+. .+|.|+.+.+.+|+
T Consensus 350 KLGNIKtL~La~N-~iE~--LSGL~---------KLYSLvnLDl~~N~-Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIET--LSGLR---------KLYSLVNLDLSSNQ-IEELDEVNHIG--NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhh-hHhh--hhhhH---------hhhhheeccccccc-hhhHHHhcccc--cccHHHHHhhcCCCcccc
Confidence 4678999999998 4332 22222 25569999999998 443 4455554 49999999999998
Q ss_pred ---CHHHHHHHHhcCCCcee
Q 011691 406 ---NRDILDALARSRPFLNV 422 (479)
Q Consensus 406 ---~~~~~~~~~~~~p~l~~ 422 (479)
..+.++.+.++...+..
T Consensus 415 vdYRTKVLa~FGERaSE~~L 434 (490)
T KOG1259|consen 415 VDYRTKVLARFGERASEISL 434 (490)
T ss_pred chHHHHHHHHHhhhhhheec
Confidence 34456666655554443
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=1.6e-06 Score=72.08 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=64.9
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHH
Q 011691 308 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 387 (479)
Q Consensus 308 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~ 387 (479)
.++.++-+++ .|..+|+..+. .++.++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHH
Confidence 4566666663 56666666544 36667777777777777777776666 45677777777777777777777
Q ss_pred hhccCCCCccEEEecCCC---CHH-HHHHHHhcCCCceee
Q 011691 388 LKKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNVA 423 (479)
Q Consensus 388 l~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~p~l~~~ 423 (479)
+.. +++|+.|.+.+-+ ..+ +...+....|+..+.
T Consensus 172 L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 172 LLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 665 6777777766654 222 333344566665543
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2.8e-06 Score=70.56 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=66.5
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 011691 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 333 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 333 (479)
.++.++-+++.|...|+.++.. ++.|+.|.+..|..+.|.++..+... .++|+.|+|++|+.|++.++..+.+ ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~--~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGGL--APSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhccc--ccchheeeccCCCeechhHHHHHHH-hh
Confidence 4667777777888888887776 88888888888888888777777653 3788888888888888887776664 77
Q ss_pred CCCEEecCCCCCCC
Q 011691 334 PISELRVRQCPLIG 347 (479)
Q Consensus 334 ~L~~L~l~~~~~l~ 347 (479)
+|+.|.+.+-+.+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 77777777655444
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=1.8e-06 Score=75.92 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=54.9
Q ss_pred CCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011691 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 305 (479)
.++.|+.++++++ .++. .-.++.-.|.++.|++++|.+...+- +.. +++|+.|+++++.--.-.|+.. +
T Consensus 282 TWq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n--La~--L~~L~~LDLS~N~Ls~~~Gwh~-----K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQN--LAE--LPQLQLLDLSGNLLAECVGWHL-----K 350 (490)
T ss_pred hHhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehh--hhh--cccceEeecccchhHhhhhhHh-----h
Confidence 3445555555552 2221 11223344555666666655443221 222 5556666665532111122211 1
Q ss_pred CCCccEEeccCCCCCCH-HHHHHHHhcCCCCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCC
Q 011691 306 KLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 378 (479)
+.++++|.++. +.+.+ .++. .+-+|..|++++| +|.... +..+. .+|.|+.+.+.+|+
T Consensus 351 LGNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC
Confidence 14556666655 23321 1222 2334566666655 333221 11111 35566666666665
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.75 E-value=2.5e-05 Score=76.46 Aligned_cols=315 Identities=22% Similarity=0.276 Sum_probs=170.7
Q ss_pred CcEEEeecCccChhHHHHHHH---cCCCccEEeccCCCCCCCccccccchHHHHhhh----cC-CCccEEeccccccccc
Q 011691 61 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 132 (479)
Q Consensus 61 L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 132 (479)
+.+|.|..+.+.+...+.+.+ ..+.|+.|++++|. +.+.+...+. .. ..|++|.+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~------ 153 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVS------ 153 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhc------
Confidence 788888887777777766665 55789999999984 5566666554 22 3456666643
Q ss_pred ccccccchHHHHHH---HHhCCCCCEEEEcCCcccCHHHHHHHHH-------hCCCCceEEecCCCCCCHH--HHHHHHh
Q 011691 133 TYFRRVNDLGILLM---ADKCASMESICLGGFCRVTDTGFKTILH-------SCSNLYKLRVSHGTQLTDL--VFHDISA 200 (479)
Q Consensus 133 ~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~--~~~~~~~ 200 (479)
..++..+...+ ...+..++.++++.+ .+...+...+.+ ...++++|.+.+|...... .+.....
T Consensus 154 ---c~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 154 ---CSLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred ---ccccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 22333332222 222667778888774 443333222222 2446778888776643221 1222223
Q ss_pred cCCC-ccEEEcCCCCCCCHHHHHHhh----CC-CCCCEEecCCCCCCChHHHHhh----hcCCCCcEEEccCCCCchHHH
Q 011691 201 TSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVGV 270 (479)
Q Consensus 201 ~~~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~l~~~~l 270 (479)
..+. +.+|++.. +.+.+.++..+. .+ +.++.++++.| .+++.+...+ ..++.++.+.++.|.+.+.+.
T Consensus 230 ~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 230 SGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred ccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 3334 66677776 567766665544 23 56778888875 5555554443 366788888888888877666
Q ss_pred HHHHhh--cCCCccEEecCCCCCCCHHHHHHHhccCCCCCc-cEEeccCCCCCCHHHHHHHHhc----CCCCCEEecCCC
Q 011691 271 SYLRLT--VITSLVKLSLRGCKRLTDKCISALFDGTSKLQL-QELDLSNLPHLSDNGILTLATC----RVPISELRVRQC 343 (479)
Q Consensus 271 ~~l~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~ 343 (479)
..+... ....+..+.+.++...+-.+...+........+ ....+++ +...+.....+... -+.+..+++..+
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ 386 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence 544441 234455555554433332222111111000222 2223333 34444444333221 123566666666
Q ss_pred CCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011691 344 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 405 (479)
Q Consensus 344 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 405 (479)
.+...+...++.... ..+.++.++++.+. ..+.+...+.. ... .++.+.++.++
T Consensus 387 -~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 387 -VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred -ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 444444444444333 57888888888877 33333332222 134 78888888776
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.60 E-value=1.3e-05 Score=54.72 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=28.1
Q ss_pred CccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC
Q 011691 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 264 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 264 (479)
+|+.|+++++ .+...+...+..+++|++|++++ +.+.......+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555543 33333333344555555555554 24444444444555555555555543
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.56 E-value=3.7e-05 Score=80.92 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=107.1
Q ss_pred hCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCC
Q 011691 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|++|-+......-......++..+|.|+.|++++|..+.. ++.....+-+|+.|++++ ..+...+ ..+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~~LP-~~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGISHLP-SGLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCccccc-hHHHHHH
Confidence 35667777776621101111233346677777787776554332 222233444777777777 3554322 2455666
Q ss_pred CCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCC--CchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011691 229 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 306 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 306 (479)
.|.+|++.....+... ......+++|+.|.+.... .+...+..+. .+.+|+.+.+..+....-..+..+.+-.
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~~~~e~l~~~~~L~-- 693 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSVLLLEDLLGMTRLR-- 693 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchhHhHhhhhhhHHHH--
Confidence 7777777654333222 2223347777777776542 2222233332 2555555555332210001111110000
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCC-CCCccEEEccCCCCCCHHHH
Q 011691 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGITQLAF 385 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~c~~i~~~~~ 385 (479)
...+.+.+.+|... ........+.+|+.|.+.+| .+.+..+........ .. ++++..+.+.+|....+...
T Consensus 694 ~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~-~~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDC-GISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred HHhHhhhhcccccc---eeecccccccCcceEEEEcC-CCchhhcccccccch----hhhHHHHHHHHhhccccccccch
Confidence 11122222221111 11111224667788888777 443322211100000 01 34555566666654443222
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011691 386 RWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 386 ~~l~~~~~~~L~~L~l~~~~ 405 (479)
.. ..|+|+.|.+..|.
T Consensus 766 ~~----f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 766 LL----FAPHLTSLSLVSCR 781 (889)
T ss_pred hh----ccCcccEEEEeccc
Confidence 22 36788888888876
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.56 E-value=6.9e-05 Score=78.92 Aligned_cols=230 Identities=18% Similarity=0.235 Sum_probs=103.2
Q ss_pred CCCCcEEEeecCc--cChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccc
Q 011691 58 LPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 135 (479)
Q Consensus 58 ~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 135 (479)
+++|+.|-+..+. +.. ....+...+|.|++|++++|..+.. -...|+.+-+|++|++..
T Consensus 544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~---------LP~~I~~Li~LryL~L~~--------- 604 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSK---------LPSSIGELVHLRYLDLSD--------- 604 (889)
T ss_pred CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCc---------CChHHhhhhhhhcccccC---------
Confidence 5567777776553 222 1222234678888888887643211 122455666777777753
Q ss_pred cccchHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCC-CCHHHHHHHHhcCCCccEEEcCCCC
Q 011691 136 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHVCLRWCN 214 (479)
Q Consensus 136 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (479)
..+. .++.-...+..|..|++.....+... ..+...+++|+.|.+..... .+...+..+ ..+.+|+.+....+.
T Consensus 605 t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 605 TGIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS 679 (889)
T ss_pred CCcc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch
Confidence 2222 11111234556777777764333222 33334577777777654431 111222221 333444444443321
Q ss_pred CCCHHHHHHhhCCCCCCE----EecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHh---h-cCCCccEEec
Q 011691 215 LLTNHAIKSLASNTGIKV----LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL---T-VITSLVKLSL 286 (479)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~----L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~---~-~~~~L~~L~l 286 (479)
. ..+..+...+.|.. +.+.+|. .......+..+.+|+.|.+.+|.+.+........ . .++++..+.+
T Consensus 680 ~---~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 680 V---LLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred h---HhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 1 11112222222222 2211111 1112233445667777777776554432211000 0 1334444444
Q ss_pred CCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCC
Q 011691 287 RGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLS 321 (479)
Q Consensus 287 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 321 (479)
..|....+.....++ ++|++|.+..|..+.
T Consensus 755 ~~~~~~r~l~~~~f~-----~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 755 LNCHMLRDLTWLLFA-----PHLTSLSLVSCRLLE 784 (889)
T ss_pred hccccccccchhhcc-----CcccEEEEecccccc
Confidence 455444433333332 666666666664443
No 47
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.54 E-value=1.1e-06 Score=70.92 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=32.0
Q ss_pred CCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCC
Q 011691 152 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 152 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
+++.|.+++ +.++.. ...+ ..+.+|+.|++.++. +.+ +......+++|+.|+++- +.+.. ....++.+|.|+
T Consensus 34 ~ITrLtLSH-NKl~~v-ppni-a~l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgm-nrl~~-lprgfgs~p~le 105 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVV-PPNI-AELKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGM-NRLNI-LPRGFGSFPALE 105 (264)
T ss_pred hhhhhhccc-Cceeec-CCcH-HHhhhhhhhhcccch-hhh--cChhhhhchhhhheecch-hhhhc-CccccCCCchhh
Confidence 455556665 344432 1122 234555555555432 111 111223344555554443 12211 112334555555
Q ss_pred EEecCC
Q 011691 232 VLDLRD 237 (479)
Q Consensus 232 ~L~l~~ 237 (479)
.|+++.
T Consensus 106 vldlty 111 (264)
T KOG0617|consen 106 VLDLTY 111 (264)
T ss_pred hhhccc
Confidence 555554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=1.6e-05 Score=78.38 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=56.2
Q ss_pred HhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCC
Q 011691 148 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASN 227 (479)
Q Consensus 148 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 227 (479)
+-++.|+.|+|++ +.+..-. .+..|++|++|+++++..-....+. ...| +|+.|.+.+ +.++ .+..+.++
T Consensus 184 qll~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrn-N~l~--tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRN-NALT--TLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhH---HHHhcccccccccccchhccccccc--hhhh-hheeeeecc-cHHH--hhhhHHhh
Confidence 3356677777777 4555432 3456777777777765421110000 1123 466666666 3332 23344566
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCC
Q 011691 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 265 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 265 (479)
.+|+.|+++.+--.....+..+..+..|+.|.|.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66777777653222222334444555666666766644
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=2.8e-05 Score=53.04 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=43.1
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011691 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
|+|++|++++| .+.......+..+++|+.|++++|.+.......+.. +++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCC
Confidence 57888888885 677666677778888888888888776544443333 778888888775
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=1.2e-05 Score=79.14 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011691 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 305 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 305 (479)
-++.|+.|+++.+ ++++. ..+..+++|++|+|++|.+.. ++.+...+|. |+.|.++++.--+-.++..+
T Consensus 185 ll~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L----- 253 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALTTLRGIENL----- 253 (1096)
T ss_pred HHHHhhhhccchh-hhhhh--HHHHhcccccccccccchhcc--ccccchhhhh-heeeeecccHHHhhhhHHhh-----
Confidence 4567777777763 44332 356677777777777775543 2222221233 77777776432223455555
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCC
Q 011691 306 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 344 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 344 (479)
.+|+.||+++ +-+.+-.--...-.+..|+.|.+.|||
T Consensus 254 -ksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 -KSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6777777776 333321111111124456777777765
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.36 E-value=7e-07 Score=71.96 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=7.6
Q ss_pred hcCCCCcEEEccCCCCc
Q 011691 250 SSLPQLKILLLDGSDIS 266 (479)
Q Consensus 250 ~~l~~L~~L~l~~~~l~ 266 (479)
+.+.+|+.|++.+|.++
T Consensus 53 a~l~nlevln~~nnqie 69 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIE 69 (264)
T ss_pred HHhhhhhhhhcccchhh
Confidence 33444444444444443
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.28 E-value=6e-05 Score=73.86 Aligned_cols=218 Identities=23% Similarity=0.223 Sum_probs=96.6
Q ss_pred CCEEEEcCCcccCHHHHHHHHHh---CCCCceEEecCCCCCCHHHHHHHHhcC----CCccEEEcCCCCCCCHHHHHH--
Q 011691 153 MESICLGGFCRVTDTGFKTILHS---CSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 223 (479)
Q Consensus 153 L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-- 223 (479)
+..|.+.+| .+.+.++..+.+. .+.|..|+++++.. .+.+...+.... ..|+.|.+..| .++..+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 556666664 4554444444443 34566666666543 344444333322 23455555554 233332222
Q ss_pred --hhCCCCCCEEecCCCCCCChHHHHh----h----hcCCCCcEEEccCCCCchHHHHHHHh--hcCCC-ccEEecCCCC
Q 011691 224 --LASNTGIKVLDLRDCKNLGDEALRA----I----SSLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 290 (479)
Q Consensus 224 --l~~~~~L~~L~l~~~~~l~~~~~~~----l----~~l~~L~~L~l~~~~l~~~~l~~l~~--~~~~~-L~~L~l~~~~ 290 (479)
+..++.++.++++.|. +...+... + ....++++|++.+|.++......+.. ...++ +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 2245556666665532 22222111 1 12445666666666555544433333 01222 33344443 3
Q ss_pred CCCHHHHHHHhccCCC--CCccEEeccCCCCCCHHHHHH---HHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCC
Q 011691 291 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILT---LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 365 (479)
Q Consensus 291 ~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 365 (479)
.+.+.++..+...... +.+++++++.| .+++.+... ....++.++.+.+..+ .+++.+...+...+. .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 3444444444332111 24455555553 444333322 2223445555555555 445555554444333 2
Q ss_pred CCCccEEEccCCCCCCH
Q 011691 366 GSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~ 382 (479)
...+..+-+.++...+.
T Consensus 317 ~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred cccchhhhccccCccch
Confidence 33344444444443333
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00034 Score=60.95 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCH-HHHHHHHh
Q 011691 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALAS 356 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~ 356 (479)
+..|+.|.+.++...+-.++. .+|+|+.|.++........++..++..+|+|++|++++| ++.+ ..+..+.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~- 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK- 113 (260)
T ss_pred ccchhhhhhhccceeecccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-
Confidence 455666666554433322222 337888888877322334455666667788888888888 5553 2222232
Q ss_pred ccccCCCCCCCCccEEEccCCCCCC--HHHHHHhhccCCCCccEEEecCCC
Q 011691 357 MLVDDDRWYGSSIRLLDLYNCGGIT--QLAFRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 357 ~~~~~~~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+++|..|++.+|.... +..-..+. .+|+|+.|+-..+.
T Consensus 114 --------~l~nL~~Ldl~n~~~~~l~dyre~vf~--ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 --------ELENLKSLDLFNCSVTNLDDYREKVFL--LLPSLKYLDGCDVD 154 (260)
T ss_pred --------hhcchhhhhcccCCccccccHHHHHHH--HhhhhccccccccC
Confidence 36677788888776221 21122222 26677776655443
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=9.7e-05 Score=64.28 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCC
Q 011691 278 ITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 343 (479)
Q Consensus 278 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 343 (479)
+|+|+.|.++....-...++..++..+ |+|++++++. +.+.+..-..-.+.+++|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhC--CceeEEeecC-CccccccccchhhhhcchhhhhcccC
Confidence 455555555553222233444444444 5666666655 44443111111223455555555555
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.60 E-value=0.0042 Score=63.96 Aligned_cols=105 Identities=24% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCC
Q 011691 230 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSK 306 (479)
Q Consensus 230 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~ 306 (479)
++.|+|+++ .+.......+..+++|+.|+|++|.+.......+.. +++|+.|+++++. ++ +..+..+
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~-lsg~iP~~l~~L------ 489 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNS-FNGSIPESLGQL------ 489 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCC-CCCCCchHHhcC------
Confidence 677788774 555555556778888888888888776443334444 8888888888853 33 2333333
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCC
Q 011691 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 345 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 345 (479)
++|+.|+|+++ .++......+.....++..+++.+|+.
T Consensus 490 ~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 78888888884 454322222333334667788877753
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.59 E-value=0.0032 Score=34.17 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=10.2
Q ss_pred CCCCEEecCCCCCCCHHHHHHH
Q 011691 333 VPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 333 ~~L~~L~l~~~~~l~~~~~~~l 354 (479)
++|+.|+|++|+.++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444443
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.57 E-value=0.005 Score=63.42 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHh
Q 011691 254 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 330 (479)
Q Consensus 254 ~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 330 (479)
.++.|+|+++.+.......+.. +++|+.|+++++. +. +..+..+ ++|+.|+|+++ .++......+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~N-~lsg~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSYN-SFNGSIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCCC-CCCCCCchHHh-
Confidence 4788999998776544444555 8999999999864 33 2223322 89999999984 66533222233
Q ss_pred cCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCC
Q 011691 331 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 379 (479)
Q Consensus 331 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 379 (479)
.+++|+.|++++| .++......+.. ...++..+++.+|..
T Consensus 488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 QLTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAG 527 (623)
T ss_pred cCCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCcc
Confidence 6899999999998 555443333333 234567788887764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.32 E-value=0.007 Score=37.72 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=20.5
Q ss_pred CCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCch
Q 011691 228 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISD 267 (479)
Q Consensus 228 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 267 (479)
++|++|+++++ .+++... .++++++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 35666666663 4543321 25666666666666666553
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.28 E-value=0.0049 Score=33.44 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CCCccEEEccCCCCCCHHHHHHhhc
Q 011691 366 GSSIRLLDLYNCGGITQLAFRWLKK 390 (479)
Q Consensus 366 ~~~L~~L~l~~c~~i~~~~~~~l~~ 390 (479)
|++|+.|+|++|+.+++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988754
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.13 E-value=0.013 Score=55.75 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=82.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCC-CCchHHHHHHHhhcCC
Q 011691 201 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVIT 279 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~l~~l~~~~~~ 279 (479)
.+++++.|++++| .+...+ . -.++|+.|.+++|..++... ..+ .++|+.|++++| .+.. ..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP--V--LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC--C--CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------ccc
Confidence 4689999999998 554433 1 23479999999987764322 112 258999999988 4431 235
Q ss_pred CccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccc
Q 011691 280 SLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 359 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 359 (479)
+|+.|.+.. .... .+..+. ++|+.|.+.+.+......+.. ...++|+.|.+++|..+. +...
T Consensus 113 sLe~L~L~~-n~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~-- 174 (426)
T PRK15386 113 SVRSLEIKG-SATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK-- 174 (426)
T ss_pred ccceEEeCC-CCCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc--
Confidence 688888864 2222 123332 678888886532111111110 112589999999995431 1111
Q ss_pred cCCCCCCCCccEEEccCCC
Q 011691 360 DDDRWYGSSIRLLDLYNCG 378 (479)
Q Consensus 360 ~~~~~~~~~L~~L~l~~c~ 378 (479)
-..+|+.|+++.+.
T Consensus 175 -----LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 -----LPESLQSITLHIEQ 188 (426)
T ss_pred -----ccccCcEEEecccc
Confidence 23579999987753
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.05 E-value=0.0052 Score=59.87 Aligned_cols=172 Identities=25% Similarity=0.313 Sum_probs=96.8
Q ss_pred cCCCccEEeccCCCCCCCccccccchHHHHhh-hcC-CCccEEecccccccccccccccchHHHHHHHHhCCCCCEEEEc
Q 011691 82 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI-NQH-GKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLG 159 (479)
Q Consensus 82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~ 159 (479)
.++.++.|++.++.. +. ++.. ... ++|+.|+++. +.+... ..-...+++|+.|+++
T Consensus 114 ~~~~l~~L~l~~n~i---------~~--i~~~~~~~~~nL~~L~l~~---------N~i~~l--~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 114 ELTNLTSLDLDNNNI---------TD--IPPLIGLLKSNLKELDLSD---------NKIESL--PSPLRNLPNLKNLDLS 171 (394)
T ss_pred cccceeEEecCCccc---------cc--Cccccccchhhcccccccc---------cchhhh--hhhhhccccccccccC
Confidence 456788888877642 22 2222 223 2677777753 222221 0112457888888888
Q ss_pred CCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCC
Q 011691 160 GFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 239 (479)
Q Consensus 160 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 239 (479)
+ +.+.+... .....+.|+.|+++++.. ... .........|++|.+++...+. ....+..+.++..+.+.++
T Consensus 172 ~-N~l~~l~~--~~~~~~~L~~L~ls~N~i-~~l--~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n- 242 (394)
T COG4886 172 F-NDLSDLPK--LLSNLSNLNNLDLSGNKI-SDL--PPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNN- 242 (394)
T ss_pred C-chhhhhhh--hhhhhhhhhheeccCCcc-ccC--chhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCCc-
Confidence 8 45555422 112567888888887653 111 1111233357888887732221 1223446666777766553
Q ss_pred CCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011691 240 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 240 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.+.+. ...+..+++++.|++++|.+++... +.. ..+++.|++++.
T Consensus 243 ~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~--~~~l~~L~~s~n 287 (394)
T COG4886 243 KLEDL-PESIGNLSNLETLDLSNNQISSISS--LGS--LTNLRELDLSGN 287 (394)
T ss_pred eeeec-cchhccccccceecccccccccccc--ccc--cCccCEEeccCc
Confidence 33221 3455677788888888887775443 333 788888888874
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.02 E-value=0.0045 Score=51.98 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHH-HHHHHhccccCCCCCCCCccEEEccCCCCCCHH-H
Q 011691 307 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS-VIALASMLVDDDRWYGSSIRLLDLYNCGGITQL-A 384 (479)
Q Consensus 307 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~~-~ 384 (479)
+.|.+|.+++ +.|+...-. +...+|+|..|.+.+| .+...+ +..++ .||+|++|.+-+++ ++.. .
T Consensus 64 ~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred cccceEEecC-Ccceeeccc-hhhhccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcccC
Confidence 6777777776 455532111 2234677788888777 443332 33333 57888888888887 4432 2
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011691 385 FRWLKKPYFPRLRWLGVTGSV 405 (479)
Q Consensus 385 ~~~l~~~~~~~L~~L~l~~~~ 405 (479)
.+...--.+|+|+.|++.+..
T Consensus 131 YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeEEEEecCcceEeehhhhh
Confidence 222211137888888888765
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.002 Score=56.67 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecc
Q 011691 58 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 125 (479)
Q Consensus 58 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~ 125 (479)
+.+.+.|++.++.++|..+ .+.+|.|++|.|+-|. |+ .+..+..|++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk---------Is--sL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK---------IS--SLAPLQRCTRLKELYLR 71 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccc---------cc--cchhHHHHHHHHHHHHH
Confidence 3455555666666655322 3356666666666553 21 23344455555555554
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.88 E-value=0.0073 Score=50.75 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=17.0
Q ss_pred CCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011691 226 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 226 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
.++.|..|.+++ +.++.....--.-+|+|+.|.+.+|.+.
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred CccccceEEecC-CcceeeccchhhhccccceEEecCcchh
Confidence 444555555544 2333332222223344555555554433
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.81 E-value=0.023 Score=54.11 Aligned_cols=143 Identities=13% Similarity=0.262 Sum_probs=84.6
Q ss_pred HHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcC-CCCcEEEccCC-CCchHHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011691 219 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL-PQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 296 (479)
Q Consensus 219 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~~ 296 (479)
.....+..|.+++.|++++| .+.... .+ ++|++|.+++| .++. ++.. ..++|+.|.+++|..+.
T Consensus 43 ~a~~r~~~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~---LP~nLe~L~Ls~Cs~L~--- 108 (426)
T PRK15386 43 EITPQIEEARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGS---IPEGLEKLTVCHCPEIS--- 108 (426)
T ss_pred HHHHHHHHhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCch---hhhhhhheEccCccccc---
Confidence 33444556899999999987 444322 33 36999999886 3221 1111 13579999999986554
Q ss_pred HHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccC
Q 011691 297 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 376 (479)
Q Consensus 297 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (479)
.+. ++|++|++.. +.... +...-++|+.|.+.++......... .. -.++|+.|++++
T Consensus 109 --sLP-----~sLe~L~L~~-n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp---~~-------LPsSLk~L~Is~ 165 (426)
T PRK15386 109 --GLP-----ESVRSLEIKG-SATDS-----IKNVPNGLTSLSINSYNPENQARID---NL-------ISPSLKTLSLTG 165 (426)
T ss_pred --ccc-----cccceEEeCC-CCCcc-----cccCcchHhheeccccccccccccc---cc-------cCCcccEEEecC
Confidence 222 6788888864 33322 1112347888888654221111111 10 136799999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCC
Q 011691 377 CGGITQLAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 377 c~~i~~~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
|..+. +......+|+.|.++.+
T Consensus 166 c~~i~------LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 166 CSNII------LPEKLPESLQSITLHIE 187 (426)
T ss_pred CCccc------CcccccccCcEEEeccc
Confidence 98542 11112459999998765
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.76 E-value=0.01 Score=57.87 Aligned_cols=59 Identities=31% Similarity=0.317 Sum_probs=27.2
Q ss_pred CccEEEcCCCCCCCHHHHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCc
Q 011691 204 SLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 266 (479)
+|+.|++++ +.+.... ..+..+++|+.|+++.+ .+.+... .....++|+.|++++|.+.
T Consensus 141 nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 141 NLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhhhhheeccCCccc
Confidence 556666655 3333321 23345566666666553 2322211 1114455555666655544
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.53 E-value=0.013 Score=36.44 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCCcEEEeecCccChhHHHHHHHcCCCccEEeccCCC
Q 011691 59 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAP 95 (479)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 95 (479)
++|++|+++.+.+.+ ++.....+++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 467888888777775 44423478888888888874
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0072 Score=53.34 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCCHH-HHHHHhccCC
Q 011691 227 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK-CISALFDGTS 305 (479)
Q Consensus 227 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~ 305 (479)
+.+.+.|+..|| .+.+. ..+..++.|+.|.|+-|.|+. +..+.. |.+|+.|++..+ .+.+. .+..+ . .
T Consensus 18 l~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRkN-~I~sldEL~YL-k--n 86 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRKN-CIESLDELEYL-K--N 86 (388)
T ss_pred HHHhhhhcccCC-CccHH--HHHHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHhc-ccccHHHHHHH-h--c
Confidence 456677888776 45543 344578888998888887763 444555 888888888773 34432 22222 1 3
Q ss_pred CCCccEEeccCCCCCC---HHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHH
Q 011691 306 KLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIAL 354 (479)
Q Consensus 306 ~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 354 (479)
+|+|++|.|...+-.. ..--..+.+.+|+|++|+= ..++...+...
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~A 135 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEA 135 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHH
Confidence 3788888887643222 2222345567888888753 25565555443
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.15 E-value=0.0071 Score=59.23 Aligned_cols=106 Identities=27% Similarity=0.257 Sum_probs=55.1
Q ss_pred hCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCC
Q 011691 149 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 228 (479)
Q Consensus 149 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 228 (479)
.+++|+.|++.+ +.+... ......+++|++|+++++....-.++. .++.|+.|++.+ +.+... ..+..++
T Consensus 93 ~~~~l~~l~l~~-n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~-N~i~~~--~~~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEKI--ENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSG-NLISDI--SGLESLK 162 (414)
T ss_pred cccceeeeeccc-cchhhc--ccchhhhhcchheeccccccccccchh----hccchhhheecc-Ccchhc--cCCccch
Confidence 456677777776 344432 221245677777777765533222222 223467777766 343322 2233466
Q ss_pred CCCEEecCCCCCCChHHH-HhhhcCCCCcEEEccCCCCc
Q 011691 229 GIKVLDLRDCKNLGDEAL-RAISSLPQLKILLLDGSDIS 266 (479)
Q Consensus 229 ~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~ 266 (479)
.|+.++++++ .+..... . +..+.+++.+.+.+|.+.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666666663 3322222 1 355666666666666444
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.13 E-value=0.015 Score=45.80 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=34.1
Q ss_pred HhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011691 223 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
.+.....|+..+|++ +.+.+.........|.++.|++++|.+.+.... ++. ++.|+.|+++.+
T Consensus 48 ~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 344555666666666 244433333333555666666766666544333 333 666666666653
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.95 E-value=0.059 Score=28.41 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=12.0
Q ss_pred CCCcEEEccCCCCchHHHHHHH
Q 011691 253 PQLKILLLDGSDISDVGVSYLR 274 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~ 274 (479)
++|+.|+|++|.+++.++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4566666666666666655543
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.86 E-value=0.047 Score=28.80 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=7.0
Q ss_pred CCCEEecCCCCCCCHHHHHH
Q 011691 334 PISELRVRQCPLIGDTSVIA 353 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~ 353 (479)
+|+.|+|++| .+++.++..
T Consensus 3 ~L~~L~l~~n-~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNN-QITDEGASA 21 (24)
T ss_dssp T-SEEE-TSS-BEHHHHHHH
T ss_pred CCCEEEccCC-cCCHHHHHH
Confidence 3444444444 344444433
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.16 E-value=0.043 Score=53.76 Aligned_cols=100 Identities=34% Similarity=0.372 Sum_probs=52.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHH-hhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCC
Q 011691 201 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 279 (479)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~ 279 (479)
.+.+|+.|++.+ +.+.. +.. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+.... .+. .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~--~~~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDIS--GLE--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhcc--CCc--cch
Confidence 445677777766 34332 223 446777777777763 4432 334445556777777777665321 111 145
Q ss_pred CccEEecCCCCCCCHHH--HHHHhccCCCCCccEEeccC
Q 011691 280 SLVKLSLRGCKRLTDKC--ISALFDGTSKLQLQELDLSN 316 (479)
Q Consensus 280 ~L~~L~l~~~~~l~~~~--~~~l~~~~~~~~L~~L~l~~ 316 (479)
.|+.++++++....-+. ...+ .+++.+.+.+
T Consensus 163 ~L~~l~l~~n~i~~ie~~~~~~~------~~l~~l~l~~ 195 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDELSEL------ISLEELDLGG 195 (414)
T ss_pred hhhcccCCcchhhhhhhhhhhhc------cchHHHhccC
Confidence 56666666643221122 1222 5666666666
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.81 E-value=0.068 Score=42.20 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCEEEEcCCcccC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHHHHHHhhCCCCCC
Q 011691 153 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 231 (479)
Q Consensus 153 L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 231 (479)
+..++|+.|.-.- ...+..+ .....|+..+++++.. ... ...+....+.++.|++.+ +.+.+.+.+ ++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~f-k~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNGF-KKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHH-hCCceEEEEecccchh-hhC-CHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhh
Confidence 5567777763221 1112222 3345666667766542 111 112344555677777776 566666554 66777777
Q ss_pred EEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHH
Q 011691 232 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVS 271 (479)
Q Consensus 232 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~ 271 (479)
.|+++.+ .+. .....+..+.++-.|+..++.+......
T Consensus 104 ~lNl~~N-~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFN-PLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccC-ccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 7777763 222 2334444566666666666644433333
No 75
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.91 E-value=0.016 Score=56.34 Aligned_cols=195 Identities=16% Similarity=0.121 Sum_probs=100.7
Q ss_pred CCcEEEeecCccChhHHHHHHHcCCCccEEeccCCCCCCCccccccchHHHHhhhcCCCccEEecccccccccccccccc
Q 011691 60 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 139 (479)
Q Consensus 60 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 139 (479)
.-...+|+.|.+.. ++.-+..|..|+.+.+..|-+ -.....+.++..|++|+++.+ +++
T Consensus 76 dt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~----------r~ip~~i~~L~~lt~l~ls~N---------qlS 134 (722)
T KOG0532|consen 76 DTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCI----------RTIPEAICNLEALTFLDLSSN---------QLS 134 (722)
T ss_pred chhhhhcccccccc--CchHHHHHHHHHHHHHHhccc----------eecchhhhhhhHHHHhhhccc---------hhh
Confidence 33444555554443 222223455666666665421 001224455667777777542 211
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCcccCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCccEEEcCCCCCCCHH
Q 011691 140 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 219 (479)
Q Consensus 140 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (479)
-.... -..--|+.|.+++ ++++.. ...+. ..+.|..|+.+.|...+ +..-...+.+|+.|++.. +.+...
T Consensus 135 ~lp~~---lC~lpLkvli~sN-Nkl~~l-p~~ig-~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrR-n~l~~l 204 (722)
T KOG0532|consen 135 HLPDG---LCDLPLKVLIVSN-NKLTSL-PEEIG-LLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRR-NHLEDL 204 (722)
T ss_pred cCChh---hhcCcceeEEEec-CccccC-Ccccc-cchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhh-hhhhhC
Confidence 11110 1123488888887 566543 23332 56778888887765321 111122334666666665 344333
Q ss_pred HHHHhhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCC
Q 011691 220 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 289 (479)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~ 289 (479)
+- .+. .-.|..|+++. +++.... -.+..+..|+.|.|.+|.+.........+....-.++|++..|
T Consensus 205 p~-El~-~LpLi~lDfSc-Nkis~iP-v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PE-ELC-SLPLIRLDFSC-NKISYLP-VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CH-HHh-CCceeeeeccc-Cceeecc-hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 22 233 33578888875 4554433 3466788888888888877765554443312233455555555
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.54 E-value=0.53 Score=25.85 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCCcEEEccCCCCchHHHHHHHh
Q 011691 253 PQLKILLLDGSDISDVGVSYLRL 275 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~~~l~~l~~ 275 (479)
++|+.|+|++|.+.+.|...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777776655
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.83 E-value=0.72 Score=25.32 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=10.8
Q ss_pred CCCEEecCCCCCCCHHHHHHHHh
Q 011691 334 PISELRVRQCPLIGDTSVIALAS 356 (479)
Q Consensus 334 ~L~~L~l~~~~~l~~~~~~~l~~ 356 (479)
+|++|+|++| .+++.|...++.
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHHH
Confidence 4455555554 445555544443
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.61 E-value=1.4 Score=43.41 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=44.5
Q ss_pred HhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCC-CCHHHHHHhhccCCCCccEEEecCCC--
Q 011691 329 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG-ITQLAFRWLKKPYFPRLRWLGVTGSV-- 405 (479)
Q Consensus 329 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-i~~~~~~~l~~~~~~~L~~L~l~~~~-- 405 (479)
....|.+..+.|++|.-..-.++..++. ..|+|+.|+|++|.. +.. ...+.+-....|++|.+.||+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 3445566666666663333344445555 566667777766621 111 111211134566677777765
Q ss_pred -----CHHHHHHHHhcCCCceee
Q 011691 406 -----NRDILDALARSRPFLNVA 423 (479)
Q Consensus 406 -----~~~~~~~~~~~~p~l~~~ 423 (479)
...-+.++.+.+|++...
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRL 306 (585)
T ss_pred cchhhhHHHHHHHHHhcchheee
Confidence 233455566677776543
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=85.99 E-value=0.09 Score=51.46 Aligned_cols=153 Identities=17% Similarity=0.243 Sum_probs=74.6
Q ss_pred hhCCCCCCEEecCCCCCCChHHHHhhhcCCCCcEEEccCCCCchHHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011691 224 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 302 (479)
Q Consensus 224 l~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 302 (479)
++.+..|..|+++.+ .+.... ..+..+ -|+.|-+++|.++.... .+. ..++|..|+.+.|.-.+ ...+..+
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~l-pLkvli~sNNkl~~lp~-~ig--~~~tl~~ld~s~nei~slpsql~~l-- 188 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCDL-PLKVLIVSNNKLTSLPE-EIG--LLPTLAHLDVSKNEIQSLPSQLGYL-- 188 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhcC-cceeEEEecCccccCCc-ccc--cchhHHHhhhhhhhhhhchHHhhhH--
Confidence 345666677777653 322111 122222 36777777776553211 122 25566666666643222 1222222
Q ss_pred cCCCCCccEEeccCCCCCCHHHHHHHHhcCCCCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccEEEccCCCCCCH
Q 011691 303 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 382 (479)
Q Consensus 303 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~i~~ 382 (479)
.+|+.|.+.. +.+.+.. ..+. +-.|..|+++.| ++....+.. . .++.|++|-|.+|+ +..
T Consensus 189 ----~slr~l~vrR-n~l~~lp-~El~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 189 ----TSLRDLNVRR-NHLEDLP-EELC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQS 248 (722)
T ss_pred ----HHHHHHHHhh-hhhhhCC-HHHh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCC
Confidence 5666666665 3332211 1122 234777888766 555433322 1 46678888888777 554
Q ss_pred HHHHHhhccCCCCccEEEecCC
Q 011691 383 LAFRWLKKPYFPRLRWLGVTGS 404 (479)
Q Consensus 383 ~~~~~l~~~~~~~L~~L~l~~~ 404 (479)
-......++..-=.|+|+...|
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccceeeeeeecchhc
Confidence 3333332222334556666656
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.40 E-value=0.41 Score=37.89 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=3.7
Q ss_pred CCCCCEEEEc
Q 011691 150 CASMESICLG 159 (479)
Q Consensus 150 ~~~L~~L~l~ 159 (479)
+++|+.+.+.
T Consensus 34 ~~~l~~i~~~ 43 (129)
T PF13306_consen 34 CTSLKSINFP 43 (129)
T ss_dssp -TT-SEEEES
T ss_pred cccccccccc
Confidence 3444444444
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.15 E-value=1.1 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=4.6
Q ss_pred CCcEEEccCCCC
Q 011691 254 QLKILLLDGSDI 265 (479)
Q Consensus 254 ~L~~L~l~~~~l 265 (479)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 445555555543
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.52 E-value=0.48 Score=37.52 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=2.9
Q ss_pred CCCCCEEec
Q 011691 227 NTGIKVLDL 235 (479)
Q Consensus 227 ~~~L~~L~l 235 (479)
+++|+.+.+
T Consensus 34 ~~~l~~i~~ 42 (129)
T PF13306_consen 34 CTSLKSINF 42 (129)
T ss_dssp -TT-SEEEE
T ss_pred ccccccccc
Confidence 333444444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.67 E-value=3.9 Score=40.39 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=33.9
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCccEEeccCCC-CCC-HHHHHHHHhcCCCCCEEecCCCCCC
Q 011691 277 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCPLI 346 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~l~-~~~~~~l~~~~~~L~~L~l~~~~~l 346 (479)
..|.+..++++++.-..-+++..+++.. |+|+.|+|++.. .+. ...+..+ ....|++|-+.|||-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccc
Confidence 5666777777664433344555555444 677777777620 121 1122222 2344666666666533
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=57.69 E-value=5.5 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.7
Q ss_pred CCcEEEccCCCCc
Q 011691 254 QLKILLLDGSDIS 266 (479)
Q Consensus 254 ~L~~L~l~~~~l~ 266 (479)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=54.94 E-value=11 Score=19.92 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCch
Q 011691 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777765543
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=54.94 E-value=11 Score=19.92 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCch
Q 011691 253 PQLKILLLDGSDISD 267 (479)
Q Consensus 253 ~~L~~L~l~~~~l~~ 267 (479)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 566777777765543
No 87
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=52.54 E-value=21 Score=33.12 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=37.1
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCccEEeccCCCCCC---HHHHHHHHhcCCCCCEEecCCCCCCCHHHHH
Q 011691 277 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVI 352 (479)
Q Consensus 277 ~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 352 (479)
.=+.++..++.....++...+..+..+ +.....+...+.+. ..+ ...+..+...++.|++|++.+| .|+..++.
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn-FItg~gi~ 273 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN-FITGLGIM 273 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc-ccccHHHH
Confidence 345555555555444544333333221 11234444444442 222 1222333445556666666666 66666666
Q ss_pred HHHhcc
Q 011691 353 ALASML 358 (479)
Q Consensus 353 ~l~~~~ 358 (479)
++..++
T Consensus 274 a~~~al 279 (353)
T KOG3735|consen 274 ALLRAL 279 (353)
T ss_pred HHHHHH
Confidence 655543
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=50.71 E-value=12 Score=20.05 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.7
Q ss_pred ccEEeccC
Q 011691 309 LQELDLSN 316 (479)
Q Consensus 309 L~~L~l~~ 316 (479)
|++|.|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 44444444
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.04 E-value=27 Score=34.09 Aligned_cols=39 Identities=21% Similarity=0.060 Sum_probs=19.3
Q ss_pred CCCCccEEEccCCCCCCHHHHHHhhc--cCCCCccEEEecCC
Q 011691 365 YGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGS 404 (479)
Q Consensus 365 ~~~~L~~L~l~~c~~i~~~~~~~l~~--~~~~~L~~L~l~~~ 404 (479)
.-+.+..|+++++. ..+.+-..+.. ..-.+++.+..+.+
T Consensus 438 stqtl~kldisgn~-mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 438 STQTLAKLDISGNG-MGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred cCcccccccccCCC-cccCCCCcCccccCCCCccCCCCCCCC
Confidence 45667777777776 44433333322 01224555544433
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=38.89 E-value=29 Score=18.65 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=9.4
Q ss_pred CCCcEEEccCCCCc
Q 011691 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
.+|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777654
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.63 E-value=87 Score=29.26 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=63.1
Q ss_pred HHHHHHhccCCCCCccEEeccCCCCCCHHHHHHHHhcCC---CCCEEecCCCCCCCHHHHHHHHhccccCCCCCCCCccE
Q 011691 295 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV---PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 371 (479)
Q Consensus 295 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~---~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 371 (479)
..+..+-... +.++.+++.+...|+...+..+...+. ..+...+.+. ...+....+++.++. .++.|++
T Consensus 188 ~~leri~~nd--~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~-----~n~sl~s 259 (353)
T KOG3735|consen 188 SSLERIKEND--TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK-----ENKSLTS 259 (353)
T ss_pred HHHHHHhcCC--CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh-----hcchhhh
Confidence 3444443333 899999999877888777766655553 3444444433 444444444444444 6899999
Q ss_pred EEccCCCCCCHHHHHHhhcc--CCCCccEEEecC
Q 011691 372 LDLYNCGGITQLAFRWLKKP--YFPRLRWLGVTG 403 (479)
Q Consensus 372 L~l~~c~~i~~~~~~~l~~~--~~~~L~~L~l~~ 403 (479)
|+++++. ||..++-.+..+ .-.+|..+.+.+
T Consensus 260 lnvesnF-Itg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 260 LNVESNF-ITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred eeccccc-cccHHHHHHHHHHhccchhhHhhhhh
Confidence 9999998 998887666541 134666665543
No 92
>PHA02608 67 prohead core protein; Provisional
Probab=35.40 E-value=36 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCCCC
Q 011691 449 DELEQWLMEGEDES 462 (479)
Q Consensus 449 ~~l~~~~~~~~~~~ 462 (479)
.--+.++.+||..+
T Consensus 38 eIA~sv~iEGEe~e 51 (80)
T PHA02608 38 EIARSVMIEGEEPE 51 (80)
T ss_pred HHHHHHhhcCCCCc
Confidence 44567888887644
No 93
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=33.23 E-value=6.4 Score=28.83 Aligned_cols=6 Identities=17% Similarity=0.900 Sum_probs=2.4
Q ss_pred HHHHHH
Q 011691 450 ELEQWL 455 (479)
Q Consensus 450 ~l~~~~ 455 (479)
-+.+|+
T Consensus 70 VYSdWi 75 (109)
T KOG3214|consen 70 VYSDWI 75 (109)
T ss_pred HHHHHH
Confidence 333443
No 94
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=30.63 E-value=29 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=8.0
Q ss_pred HHHHHHHhcCCCCC
Q 011691 449 DELEQWLMEGEDES 462 (479)
Q Consensus 449 ~~l~~~~~~~~~~~ 462 (479)
+..++...++|.+.
T Consensus 55 ~ky~dleee~egen 68 (94)
T PF05756_consen 55 QKYEDLEEEKEGEN 68 (94)
T ss_pred cchhhHHHhccCCC
Confidence 44555556666555
No 95
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=21.30 E-value=2.7e+02 Score=18.78 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=5.6
Q ss_pred CCCCccEEEe
Q 011691 392 YFPRLRWLGV 401 (479)
Q Consensus 392 ~~~~L~~L~l 401 (479)
..|+|+.+.+
T Consensus 60 ~~~~Le~l~i 69 (70)
T PF07735_consen 60 SNPRLEYLEI 69 (70)
T ss_pred CCcCCcEEEE
Confidence 4566666554
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.83 E-value=61 Score=17.49 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.5
Q ss_pred CCCcEEEccCCCCc
Q 011691 253 PQLKILLLDGSDIS 266 (479)
Q Consensus 253 ~~L~~L~l~~~~l~ 266 (479)
++|+.|++++|.++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35777777777655
No 97
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=20.11 E-value=51 Score=28.31 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=8.2
Q ss_pred chHHHHHHHhcC
Q 011691 447 EVDELEQWLMEG 458 (479)
Q Consensus 447 ~~~~l~~~~~~~ 458 (479)
+.+.+++|+-.+
T Consensus 227 ~~~dlekWl~~~ 238 (303)
T COG5129 227 KKKDLEKWLGSD 238 (303)
T ss_pred hHHHHHHHhccc
Confidence 456799999433
Done!