BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011692
         (479 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
           With The Response Regulator Coma Dna Binding Domain
          Length = 383

 Score = 33.5 bits (75), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 216 LDVARA---IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS 272
           +D AR    I ++H   ++  +   S  A   L+ +  E ++S +QKA ++ E   +P  
Sbjct: 163 MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222

Query: 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306
             +    + I LC    S+ ++AIPY ++AI+V 
Sbjct: 223 --MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254


>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
 pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
           Chymosin At 2.3 Angstroms Resolution
 pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
           Refinement At 2.2 Angstroms Resolution Of Bovine
           Chymosin
 pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
          Length = 323

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 23  TTQASVEATMESVTVSGTESTCNNNCETSGAIADGEREKTVEFADELMEKGTNALKESDY 82
           T Q   + T++SVT+SG    C   C+   AI D    K V  + +++            
Sbjct: 186 TVQQYWQFTVDSVTISGVVVACEGGCQ---AILDTGTSKLVGPSSDILN----------- 231

Query: 83  GEAAECFSRALEIRVSHYGELALECVNAYY 112
                   +A+    + YGE  ++C N  Y
Sbjct: 232 ------IQQAIGATQNQYGEFDIDCDNLSY 255


>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
           Kinetic Characterization And X-Ray Analysis At
           2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
           Chymosin
          Length = 323

 Score = 28.1 bits (61), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 23  TTQASVEATMESVTVSGTESTCNNNCETSGAIADGEREKTVEFADELMEKGTNALKESDY 82
           T Q   + T++SVT+SG    C   C+   AI D    K V  + +++            
Sbjct: 186 TVQQYWQFTVDSVTISGVVVACEGGCQ---AILDTGTSKLVGPSSDILN----------- 231

Query: 83  GEAAECFSRALEIRVSHYGELALECVNAYY 112
                   +A+    + YGE  ++C N  Y
Sbjct: 232 ------IQQAIGATQNQYGEFDIDCDNLSY 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.124    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,617,674
Number of Sequences: 62578
Number of extensions: 357388
Number of successful extensions: 848
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 20
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)